BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022096
(302 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224128049|ref|XP_002320231.1| predicted protein [Populus trichocarpa]
gi|222861004|gb|EEE98546.1| predicted protein [Populus trichocarpa]
Length = 287
Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/256 (60%), Positives = 183/256 (71%), Gaps = 14/256 (5%)
Query: 16 TKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRS-----VLAVVDEEAVVVE 70
TK PP +S I Q+PKL S S+ RS VLAVVD+E V+ E
Sbjct: 21 TKTRPPPAAA-ASISSFCPPIQLQHPKLCCSLSLSNTLCLRSRKFLAVLAVVDKETVITE 79
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130
EIN E+DD E + +A+PCELYVCNLPRS DI++L+EMFKPFG+VLSVE
Sbjct: 80 -EINHVRE----EIDD---FELKKKQAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVE 131
Query: 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
VSRNPETG+SRGCGY+TMGS+ SA+NA+ ALDGSDVGGREMRVR+S++++S RN EAL
Sbjct: 132 VSRNPETGVSRGCGYITMGSVESARNAVSALDGSDVGGREMRVRYSVEISSGRRNPEALN 191
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
S P K YESPHKLYVGNL W+ KP++LRN F FG VVSARVL DRKG R + F+S
Sbjct: 192 SAPTKHLFYESPHKLYVGNLPWSTKPDELRNLFNHFGIVVSARVLSDRKGGKNRTYAFLS 251
Query: 251 FSSDAERDAALSLNGT 266
F SDAERDAALS+NGT
Sbjct: 252 FLSDAERDAALSMNGT 267
>gi|449445537|ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 286
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 180/237 (75%), Gaps = 7/237 (2%)
Query: 31 SLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS-S 89
S + +F Y KL S +H F + V+D E+ + E+ I V G+ + S S
Sbjct: 38 SFHSSFHFDYTKLVSL-RHNHGERFPVLFTVLDNESALTEEAI-----VEGDVKSEGSLS 91
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+E + ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSRNPETGIS+GCGY+TMG
Sbjct: 92 NQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 151
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
SINSAK +I ALDGSDVGGREMRVRF++DMNS+ RN L S PKK +YESP+K+YVGN
Sbjct: 152 SINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGN 211
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
LSW VKP DLRN F RFGTVVSA+VL+DR+ +RV+GF+SFSS AERDA++SL+GT
Sbjct: 212 LSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGT 268
>gi|449518978|ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 284
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 146/237 (61%), Positives = 180/237 (75%), Gaps = 7/237 (2%)
Query: 31 SLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS-S 89
S + +F Y KL S +H F + V+D E+ + E+ I V G+ + S S
Sbjct: 36 SFHSSFHFDYTKLVSL-RHNHGERFPVLFTVLDNESALTEEAI-----VEGDVKSEGSLS 89
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+E + ARPCELYVCNLPRS DI+EL+EMFKP+GTVL+ EVSRNPETGIS+GCGY+TMG
Sbjct: 90 NQEVKKLARPCELYVCNLPRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMG 149
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
SINSAK +I ALDGSDVGGREMRVRF++DMNS+ RN L S PKK +YESP+K+YVGN
Sbjct: 150 SINSAKVSITALDGSDVGGREMRVRFAVDMNSKKRNLNNLHSSPKKNIIYESPYKVYVGN 209
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
LSW VKP DLRN F RFGTVVSA+VL+DR+ +RV+GF+SFSS AERDA++SL+GT
Sbjct: 210 LSWDVKPGDLRNLFSRFGTVVSAKVLNDRRAGKSRVYGFLSFSSAAERDASISLDGT 266
>gi|255548039|ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223545556|gb|EEF47060.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 281
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 185/264 (70%), Gaps = 27/264 (10%)
Query: 21 PATPKRFGFTSLPTLINFQYPKLSSCWSRSH--------------PAGFR----SVLAVV 62
P+ P F +LP+L +PK S C+ +SH PA ++LA+V
Sbjct: 8 PSLPSSFRTPTLPSL---PFPKFS-CFLQSHSREIPLLSSSSSLWPANKSKRVFAILALV 63
Query: 63 DEEAVVVEDEINGKDNVGGNEVDDDSSV-EEPRSRARPCELYVCNLPRSFDISELLEMFK 121
+EE+VV E+ D ++ + + + + RPCELYVCNLPRS DI+EL+E+FK
Sbjct: 64 NEESVVAEE----VDREENENESEEDELGRQLKKQPRPCELYVCNLPRSCDIAELVELFK 119
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
P+GTV+SVEVSRNPETGISRGCG++TMGSINSAKNAI ALDGSD+GGREMRV+FS+DMNS
Sbjct: 120 PYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAALDGSDIGGREMRVKFSVDMNS 179
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
RN E L S P K YESP K+YVGNL+W VKPE+LR+ F +FGTVVSARVL+DRK
Sbjct: 180 GRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAG 239
Query: 242 TTRVFGFISFSSDAERDAALSLNG 265
R +GF+SFSS ERDAALS NG
Sbjct: 240 KNRAYGFLSFSSTKERDAALSFNG 263
>gi|15223293|ref|NP_171616.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|21554268|gb|AAM63343.1| ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7 [Arabidopsis thaliana]
gi|332189110|gb|AEE27231.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 293
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/187 (67%), Positives = 151/187 (80%), Gaps = 3/187 (1%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEVSRNP+TG S
Sbjct: 89 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGES 148
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVY 199
RG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN T RN E L S PKKI +Y
Sbjct: 149 RGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMY 208
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
ES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+SF+S ERDA
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 260 ALSLNGT 266
ALS NGT
Sbjct: 269 ALSFNGT 275
>gi|297843010|ref|XP_002889386.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297335228|gb|EFH65645.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 298
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 125/190 (65%), Positives = 152/190 (80%), Gaps = 3/190 (1%)
Query: 80 GGNEVDDDSSVEE--PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
G E + DS V E P + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEVSRNP+T
Sbjct: 91 GEGETNGDSVVSEAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN-SRTRNAEALISPPKKI 196
G SRG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN RN E L S PKKI
Sbjct: 151 GESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKI 210
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+YES +K+YVGNL W +P+ LR+HF +FGT+VS RVLHDRK RVF F+SF++ E
Sbjct: 211 LMYESQYKVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEE 270
Query: 257 RDAALSLNGT 266
RDAALSLNGT
Sbjct: 271 RDAALSLNGT 280
>gi|79316226|ref|NP_001030925.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189111|gb|AEE27232.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 294
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 151/188 (80%), Gaps = 4/188 (2%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGI 139
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEV SRNP+TG
Sbjct: 89 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGE 148
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFV 198
SRG GY+TMGSINSAK AI +LDG++VGGREMRVR+S+DMN TR N E L S PKKI +
Sbjct: 149 SRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILM 208
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
YES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+SF+S ERD
Sbjct: 209 YESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERD 268
Query: 259 AALSLNGT 266
AALS NGT
Sbjct: 269 AALSFNGT 276
>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 130/204 (63%), Positives = 155/204 (75%), Gaps = 13/204 (6%)
Query: 83 EVDDDSSVE--EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGI 139
E + DS V EP + RPCELYVCN+PRS+DI++LL+MF+PFGTV+SVEV SRNP+TG
Sbjct: 445 EPNKDSVVSKAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGE 504
Query: 140 SRGCGYLTMGSINSAKNAIIALDGS---------DVGGREMRVRFSIDMNSRTR-NAEAL 189
SRG GY+TMGSINSAK AI +LDG+ +VGGREMRVR+S+DMN TR N E L
Sbjct: 505 SRGSGYVTMGSINSAKIAIASLDGTVRARETKKQEVGGREMRVRYSVDMNPGTRRNPEVL 564
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
S PKKI +YES HK+YVGNL W +P+ LRNHF +FGT+VS RVLHDRK RVF F+
Sbjct: 565 NSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFL 624
Query: 250 SFSSDAERDAALSLNGTVESHTVA 273
SF+S ERDAALS NGTV + VA
Sbjct: 625 SFTSGEERDAALSFNGTVNNMKVA 648
>gi|388515725|gb|AFK45924.1| unknown [Lotus japonicus]
Length = 290
Score = 249 bits (637), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 172/242 (71%), Gaps = 15/242 (6%)
Query: 37 NFQYPKLSSCWSRS----HPAGFRSVL--AVVDEEAVVVEDEINGK-DNVGGNEVDDDSS 89
+F++P C + P+ ++ L A EAV E +N + D+V NE ++
Sbjct: 34 HFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIPEAVNGEKSLNTQNDDVFKNEEEEQ-- 91
Query: 90 VEEPRSRAR-PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ P+ R R PCE+YVCNLPRS + + LL++FKP+GT++SVEVSRN ETG SRGCGY+ M
Sbjct: 92 -QPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGTIISVEVSRNAETGESRGCGYVIM 150
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMN-SRT---RNAEALISPPKKIFVYESPHK 204
SINSAK+AI ALDGSDVGGRE+RV+FS++M+ RT NA + + PK+ F YE+PHK
Sbjct: 151 ESINSAKSAIAALDGSDVGGRELRVKFSVEMSLERTDANANAGEMYASPKRTFYYEAPHK 210
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVGNL+ VKPE LRNHF RFG V+S RVLHDRK RV+ F+SF S+AERDAA+SLN
Sbjct: 211 LYVGNLARVVKPEQLRNHFIRFGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLN 270
Query: 265 GT 266
GT
Sbjct: 271 GT 272
>gi|356520229|ref|XP_003528766.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 277
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 127/234 (54%), Positives = 164/234 (70%), Gaps = 5/234 (2%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR 94
++ F YPK S + + S + EE VVE+ + ++ V DD EE R
Sbjct: 29 VLQFAYPKRSRTFLEPSSSSSFSPMRKTKEE--VVEERLYREEYVHPRN-DDVLEDEEER 85
Query: 95 SR--ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
+ + CE+YVCNLPR D + LL+MF+P+GT+LSVEV R+ ET S+GCGY+T+GSI
Sbjct: 86 DKRLGKACEVYVCNLPRRCDATYLLDMFRPYGTILSVEVCRDAETNESKGCGYVTLGSIY 145
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
SA+NA+ ALDGSDVGGRE+RVRFSI+MNS+ R+ + S K+I YESPHKLYVGNL+
Sbjct: 146 SARNAVAALDGSDVGGRELRVRFSIEMNSKRRSFNKMNSSTKRISYYESPHKLYVGNLAK 205
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
V+PE LR+ F RFG VVSARVLHD K +RV+ F+SF S+AERDAA+SLNGT
Sbjct: 206 TVRPEQLRDLFSRFGNVVSARVLHDFKQGNSRVYAFLSFQSEAERDAAMSLNGT 259
>gi|296089011|emb|CBI38714.3| unnamed protein product [Vitis vinifera]
Length = 166
Score = 219 bits (559), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/147 (70%), Positives = 121/147 (82%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
MFKP GTV S+EV RN ETG+SRG GY+TM S+ AK AI ALDGSDVGGREMRVRFS D
Sbjct: 1 MFKPHGTVQSIEVCRNAETGVSRGSGYVTMSSMREAKAAIAALDGSDVGGREMRVRFSTD 60
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
MN R RN+EAL S P + ++ESP+KLYVGNL+WA+KPEDLRNHF +FGTVVSARV+HDR
Sbjct: 61 MNFRRRNSEALNSAPMRNLIFESPYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDR 120
Query: 239 KGQTTRVFGFISFSSDAERDAALSLNG 265
K R +GF+SFSS AE +AA+SLNG
Sbjct: 121 KAGKHRAYGFLSFSSAAECEAAMSLNG 147
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + +L F FGTV+S V + + G R G+L+ S + A
Sbjct: 84 PYKLYVGNLAWAIKPEDLRNHFSQFGTVVSARVVHDRKAGKHRAYGFLSFSSAAECE-AA 142
Query: 159 IALDGSDVGGREMRV 173
++L+G + GR + V
Sbjct: 143 MSLNGKEFRGRSLVV 157
>gi|356560231|ref|XP_003548397.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 271
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 130/175 (74%), Gaps = 3/175 (1%)
Query: 83 EVDDDSSVEEPRSR--ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGI 139
E DD EE R + + CE+YVCNLPRS D + LL+MF+P+GT+LS+EV RN E
Sbjct: 79 ENDDVLEDEEEREKRLGKACEVYVCNLPRSCDAAYLLDMFRPYGTILSIEVVCRNAENNE 138
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
S+GC Y+T+GSI+SA+NA+ ALDGSDVGG E+RVRFSI+MNSR R+ + S K+I Y
Sbjct: 139 SKGCSYVTLGSIHSARNAVAALDGSDVGGCELRVRFSIEMNSRRRSFNKMNSSTKRISYY 198
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
ESPHKLYVGNL+ V+PE LR+ F RFG +VSARVL D K +RV+ F+SF S+
Sbjct: 199 ESPHKLYVGNLAKTVRPEQLRDLFCRFGNIVSARVLRDFKQGNSRVYAFLSFQSE 253
>gi|115474525|ref|NP_001060859.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|50725630|dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa Japonica
Group]
gi|113622828|dbj|BAF22773.1| Os08g0117100 [Oryza sativa Japonica Group]
gi|125559951|gb|EAZ05399.1| hypothetical protein OsI_27607 [Oryza sativa Indica Group]
gi|215704603|dbj|BAG94231.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 94/166 (56%), Positives = 129/166 (77%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
EL+VCNLPR D+ +L E+FKP+GTVLSVE+SR+PETG+SRGCG++TM S+ A+ A+ A
Sbjct: 135 ELFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNA 194
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG D+ GREM V+ S D+ S+ RN +PP K ++ESPHK+YVGN++W+V+P++LR
Sbjct: 195 LDGFDLDGREMLVKLSSDVVSKRRNINMTHTPPVKDHIFESPHKIYVGNIAWSVEPQELR 254
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+F + GTVVS R+L DRKG RV+GF+SF+S E +AAL L+ T
Sbjct: 255 EYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELEAALKLDNT 300
>gi|326497679|dbj|BAK05929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/192 (54%), Positives = 138/192 (71%), Gaps = 2/192 (1%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
+++ GG +D S + R R RP EL+VCNLPR + ELLE+F P+GTVLSVEVSR+
Sbjct: 105 EEHYGGEPAAEDGSGWD-RRRPRPRELFVCNLPRRCGVDELLELFGPYGTVLSVEVSRDA 163
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPK 194
ETGISRGCG++TM S+ A+ AI ALDG D+ GREM V+ + + + RN L +PP
Sbjct: 164 ETGISRGCGFVTMRSLAEARTAINALDGFDLDGREMFVKLAAHVIASRRNPGGLSHTPPM 223
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K ++ES +K+YVGNL+W+V+P+ LR HF + GTVVS R+L DRKG +RV+GF+SFSS
Sbjct: 224 KDHIFESRYKIYVGNLAWSVQPQHLREHFTKCGTVVSTRLLTDRKGGRSRVYGFLSFSSA 283
Query: 255 AERDAALSLNGT 266
E +AAL LN T
Sbjct: 284 EELEAALQLNNT 295
>gi|357139508|ref|XP_003571323.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 288
Score = 196 bits (499), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DSS RS RP EL+VCNLPR + +LL +F+P+GTVLSVEVSR+PETGISRGCG++
Sbjct: 89 DSSGWTQRS-PRPRELFVCNLPRRCGVDDLLHLFQPYGTVLSVEVSRDPETGISRGCGFV 147
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
TM S+ +A+ A+ ALDG D+ GREM V+ + + S RN + P K ++ESP+K+Y
Sbjct: 148 TMRSLAAARTAMNALDGFDLDGREMFVKLASHVVSNRRNPSLSHTAPMKDHIFESPYKIY 207
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
VGNL+W+V+P+ LR F + G +VS R+L DRKG RV+GF+SFSS E DAAL LN T
Sbjct: 208 VGNLAWSVQPQHLRELFTQCGNIVSTRLLTDRKGARNRVYGFLSFSSPEELDAALKLNNT 267
>gi|242078001|ref|XP_002443769.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
gi|241940119|gb|EES13264.1| hypothetical protein SORBIDRAFT_07g001610 [Sorghum bicolor]
Length = 308
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/174 (54%), Positives = 125/174 (71%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LL++F P GTVLSVE+SR+ ETGISRG ++TM S+
Sbjct: 117 RQWPRPRELFVCNLPRRCDVQDLLQLFTPHGTVLSVEISRDAETGISRGTAFVTMRSLAE 176
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG ++ GRE+ V+ + D+ S +N P K ++ESPHK+YVGNL+W+
Sbjct: 177 ARTAINALDGFELDGREVFVKLASDVISNRKNVNLAHITPMKDHIFESPHKVYVGNLAWS 236
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E +AAL L+ TV
Sbjct: 237 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAEELEAALKLDRTV 290
>gi|413941709|gb|AFW74358.1| hypothetical protein ZEAMMB73_309849 [Zea mays]
Length = 826
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 123/174 (70%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LLE+F P GTVLSVE+SR+ E+GISRG +TM S+
Sbjct: 635 RQWPRPRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAE 694
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG D+ GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+
Sbjct: 695 ARAAIDALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWS 754
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E + AL L+ TV
Sbjct: 755 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTV 808
>gi|212722626|ref|NP_001131649.1| uncharacterized protein LOC100193009 [Zea mays]
gi|194692152|gb|ACF80160.1| unknown [Zea mays]
Length = 314
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 93/174 (53%), Positives = 123/174 (70%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R RP EL+VCNLPR D+ +LLE+F P GTVLSVE+SR+ E+GISRG +TM S+
Sbjct: 123 RQWPRPRELFVCNLPRRCDVQDLLELFTPHGTVLSVEISRDAESGISRGTASVTMRSLAE 182
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ALDG D+ GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+
Sbjct: 183 ARAAIDALDGFDMDGREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWS 242
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
V+P+DLR F + GTVVS R+L DRKG RV+GF+SFSS E + AL L+ TV
Sbjct: 243 VQPQDLRELFTQCGTVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTV 296
>gi|363808212|ref|NP_001241976.1| uncharacterized protein LOC100803098 [Glycine max]
gi|255639493|gb|ACU20041.1| unknown [Glycine max]
Length = 191
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 89/174 (51%), Positives = 109/174 (62%), Gaps = 26/174 (14%)
Query: 119 MFKPFGTVLSVEV--------------------------SRNPETGISRGCGYLTMGSIN 152
MF P GTVLS +V R+ ETG SRG Y+TM SIN
Sbjct: 1 MFNPHGTVLSAQVYCLFNILLSSVFLFFCLSLEISLFQVCRSAETGESRGSAYVTMASIN 60
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
SA+ AI ALD SD GGRE+RVRFS +MN + RN E + S PK++ YE PHKLYVGNLS
Sbjct: 61 SARKAIAALDASDFGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSR 120
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ P+DL+ FGRFG V S RVL D + RV+ F+S+ S++ERDAA+SLNGT
Sbjct: 121 SAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHSESERDAAMSLNGT 174
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL RS +L ++F FG V SV V ++ G R +++ S S ++A
Sbjct: 110 PHKLYVGNLSRSAGPQDLKQLFGRFGIVASVRVLQDLRKGNRRVYAFVSYHS-ESERDAA 168
Query: 159 IALDGSDVGGREMRVRFSID 178
++L+G++ GR + +R ++
Sbjct: 169 MSLNGTEFFGRVLVIREGVE 188
>gi|218200393|gb|EEC82820.1| hypothetical protein OsI_27609 [Oryza sativa Indica Group]
Length = 164
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 104/137 (75%)
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
++SR+PETG+SRGCG++TM S+ A+ A+ ALDG D+ GREM V+ S D+ S+ RN
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+PP K ++ESPHK+YVGN++W+V+P++LR +F + GTVVS R+L DRKG RV+GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 250 SFSSDAERDAALSLNGT 266
SF+S E +AAL L+ T
Sbjct: 129 SFASAEELEAALKLDNT 145
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ S + EL E F GTV+S + + + G R G+L+ S + A
Sbjct: 81 PHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE-AA 139
Query: 159 IALDGSDVGGREMRVR 174
+ LD + GR + VR
Sbjct: 140 LKLDNTHFHGRNILVR 155
>gi|222639809|gb|EEE67941.1| hypothetical protein OsJ_25829 [Oryza sativa Japonica Group]
Length = 164
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 104/137 (75%)
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
++SR+PETG+SRGCG++TM S+ A+ A+ ALDG D+ GREM V+ S D+ S+ RN
Sbjct: 9 QISRDPETGLSRGCGFVTMRSLPEARTAMNALDGFDLDGREMLVKLSSDVVSKRRNINMT 68
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+PP K ++ESPHK+YVGN++W+V+P++LR +F + GTVVS R+L DRKG RV+GF+
Sbjct: 69 HTPPVKDHIFESPHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFL 128
Query: 250 SFSSDAERDAALSLNGT 266
SF+S E +AAL L+ T
Sbjct: 129 SFASAEELEAALKLDNT 145
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ S + EL E F GTV+S + + + G R G+L+ S + A
Sbjct: 81 PHKIYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKGGRGRVYGFLSFASAEELE-AA 139
Query: 159 IALDGSDVGGREMRVR 174
+ LD + GR + VR
Sbjct: 140 LKLDNTHFHGRNILVR 155
>gi|148907319|gb|ABR16796.1| unknown [Picea sitchensis]
Length = 387
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/220 (40%), Positives = 129/220 (58%), Gaps = 16/220 (7%)
Query: 50 SHPAGFRSVL---AVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCN 106
SH R V A+ EE + E + ++ E + E P R + LYV N
Sbjct: 45 SHVLARRKVFRITALAQEETQITEQSVPEEEETN-KERQPKNEEELPPRRTK---LYVGN 100
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
LPRS DI++L ++F+ FGTV SVEV RN ETGISRG ++TM ++ AK+AI L GSD+
Sbjct: 101 LPRSCDIAQLTQLFQEFGTVESVEVVRNEETGISRGFAFVTMSTVKEAKSAIEKLQGSDL 160
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GGR+M V F + S+ + + E+P++L+VGNL+W+VK E L++ F +
Sbjct: 161 GGRDMIVNFPAKVLSKKKETDD--------SYIETPYQLFVGNLAWSVKKEILKSLFSQH 212
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
G V +A+V++ KG R FGF+ SS +E DA +SL+G
Sbjct: 213 GNVSAAKVIYSGKGGVPRAFGFVCLSSQSEMEDAIVSLHG 252
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
DDS +E P +L+V NL S L +F G V + +V + + G+ R G+
Sbjct: 181 DDSYIETP------YQLFVGNLAWSVKKEILKSLFSQHGNVSAAKVIYSGKGGVPRAFGF 234
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVR----FSIDM----------NSRTRNAEALIS 191
+ + S + ++AI++L G + GR ++VR S DM T +++
Sbjct: 235 VCLSSQSEMEDAIVSLHGKEFHGRNLKVRQARPTSKDMVVSDVEENIAKPSTMVEDSMTE 294
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
K FV S + +YV NLS +VK + L F + G V+ ARVL+ RK +R +GF++F
Sbjct: 295 TVKATFV-GSAYGVYVSNLSLSVKNKALSELFSQHGNVLDARVLYARKAGRSRPYGFVNF 353
Query: 252 SSDAERDAALS 262
SS AE +AA++
Sbjct: 354 SSQAEVEAAIA 364
>gi|148908208|gb|ABR17219.1| unknown [Picea sitchensis]
Length = 296
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 111/175 (63%), Gaps = 9/175 (5%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +S + +LYV NLPRS D ++L +F+ FGTV S EV RN ETG+SRG ++TM ++
Sbjct: 94 EEKSPSNRTKLYVGNLPRSCDSAQLTHLFQEFGTVESAEVVRNEETGLSRGFAFVTMSTV 153
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
AK AI L GSD+GGR+M V F + SR E E+P++L+ GNL+
Sbjct: 154 IEAKAAIEKLQGSDLGGRDMIVNFPAAVLSRGNKTEDEY--------VETPYQLFAGNLA 205
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
W+VK E LR+ F GTV+ A+V+++ KG R FGF+ SS +E +AA+ SLNG
Sbjct: 206 WSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAIVSLNG 260
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +L+ NL S L ++F GTVL +V N + G+ R G++ + S + + AI
Sbjct: 196 PYQLFAGNLAWSVKNEILRDLFSEHGTVLGAKVVYNSKGGVPRAFGFVCLSSQSEMEAAI 255
Query: 159 IALDGSDVGGREMRVR 174
++L+G + GR + VR
Sbjct: 256 VSLNGKEFHGRNLVVR 271
>gi|357512637|ref|XP_003626607.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355501622|gb|AES82825.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 302
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 103/170 (60%), Gaps = 39/170 (22%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YVCNLPRS D LL +F P GTVLS EV RN ETG S+G Y+TMGS N+AKNA+
Sbjct: 42 PTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAL 101
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHKLYVGNLSWAVKP 216
ALDGSDVGGREM V+FS+ E L SPP ++ YE PHK+YVGNL W
Sbjct: 102 AALDGSDVGGREMLVKFSV---------ETLNSPPMRRRTIYYEGPHKVYVGNL-W---- 147
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
G+ +RV+ F+S+ S ERDA++SLNGT
Sbjct: 148 -----------------------GKKSRVYAFVSYLSQRERDASMSLNGT 174
>gi|20009|emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
Length = 292
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 111/190 (58%), Gaps = 8/190 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 105 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 164
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 165 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 223
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHT--VAFQPL 277
+ F +SA+V++DR +R FGFI+FSS +A + A ++N V H+ V+++
Sbjct: 224 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVVRIHSDEVSWR-- 281
Query: 278 FPFNYVLFVS 287
PF LF++
Sbjct: 282 -PFGISLFLT 290
>gi|356570013|ref|XP_003553187.1| PREDICTED: LOW QUALITY PROTEIN: 28 kDa ribonucleoprotein,
chloroplastic-like [Glycine max]
Length = 167
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 84/134 (62%), Gaps = 19/134 (14%)
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G SRG Y+TM SINSA+ AI+ALD SDVGGR+++VRF ++MN + RN E + S P+
Sbjct: 35 EIGESRGGAYVTMESINSARKAIVALDASDVGGRQVQVRFFVEMNPKRRNLETMNSSPR- 93
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
SW P+DLR F FG V S RVL D + + RV+ F+S+ S+
Sbjct: 94 ---------------SW---PQDLRQLFVSFGNVTSVRVLQDLRKRNCRVYAFVSYHSET 135
Query: 256 ERDAALSLNGTVES 269
+ DAA+SLNG V+S
Sbjct: 136 KHDAAMSLNGIVKS 149
>gi|311952|emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
Length = 319
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 170
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 171 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 229
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ F +SA+V++DR +R FGFI+FSS +AL VE
Sbjct: 230 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSALDTMNEVE 277
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + L + F +S +V + +G SRG G++T S + K+A+
Sbjct: 211 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMKSAL 270
Query: 159 IALDGSDVGGREMRV 173
++ ++ GR +R+
Sbjct: 271 DTMNEVELEGRPLRL 285
>gi|133249|sp|P19684.1|ROC5_NICSY RecName: Full=33 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|100390|pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
gi|20005|emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
Length = 324
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 176 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 234
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ F +SA+V++DR +R FGFI+FSS ++AL VE
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVE 282
>gi|356572637|ref|XP_003554474.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 317
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S SEL E+F GTV SVE+ + T SRG ++TMGS+ AK AI
Sbjct: 110 LYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMF 169
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKPE 217
DGS VGGR ++V F + E L+ K + Y +SPHK+Y GNL W + +
Sbjct: 170 DGSQVGGRTVKVNFP----EVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQ 225
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
LR F V+SA+V+++R +R FGF+SF + AAL + VE
Sbjct: 226 GLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVE 276
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L E F VLS +V ++G SRG G+++ + SA+ A+
Sbjct: 210 PHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAAL 269
Query: 159 IALDGSDVGGREMRVRFS 176
++G +V GR +R+ +
Sbjct: 270 DIMNGVEVQGRPLRLNLA 287
>gi|87240850|gb|ABD32708.1| RNA-binding region RNP-1 (RNA recognition motif) [Medicago
truncatula]
Length = 147
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 80/114 (70%), Gaps = 11/114 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YVCNLPRS D LL +F P GTVLS EV RN ETG S+G Y+TMGS N+AKNA+
Sbjct: 42 PTQVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAL 101
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHKLYVGNL 210
ALDGSDVGGREM V+FS+ E L SPP ++ YE PHK+YVGNL
Sbjct: 102 AALDGSDVGGREMLVKFSV---------ETLNSPPMRRRTIYYEGPHKVYVGNL 146
>gi|356505441|ref|XP_003521499.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 314
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 97/175 (55%), Gaps = 16/175 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S L E+F GTV SVE+ + T SRG ++TMG++ AK AI
Sbjct: 107 LYVGNLPYSITNSALAELFGEAGTVASVEIMYDRVTDRSRGFAFVTMGNVEDAKEAIRMF 166
Query: 162 DGSDVGGREMRVRF--------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
DGS VGGR ++V F + M S+ RN+ + FV +SPHK+Y GNL W
Sbjct: 167 DGSQVGGRTVKVNFPEVPKGGERLVMGSKIRNS-------YRGFV-DSPHKIYAGNLGWG 218
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ + LR F V+SA+V+++R +R FGF+SF + AAL + VE
Sbjct: 219 LTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAALDIMNGVE 273
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L E F VLS +V ++G SRG G+++ + SA+ A+
Sbjct: 207 PHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESAQAAL 266
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + A A SPP
Sbjct: 267 DIMNGVEVQGRPLRLNLA--------EARAPSSPP 293
>gi|225463276|ref|XP_002264127.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 311
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 100/176 (56%), Gaps = 8/176 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A LYV NLP S S+L ++F G+V+SVE+ + T SRG ++TMGS+ AK
Sbjct: 100 AEASRLYVGNLPYSMTSSQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 159
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSW 212
AI DGS VGGR ++V F R E + PK Y +SP+K+Y GNLSW
Sbjct: 160 AIRMFDGSQVGGRTVKVNFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSW 215
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ E LR+ F ++ A+V+++R+ +R FGF+SF+S ++AL+ VE
Sbjct: 216 RLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVE 271
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 205 PYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 264
Query: 159 IALDGSDVGGREMRVRFS 176
A++ +V GR +R+ +
Sbjct: 265 NAMNEVEVEGRPLRLNLA 282
>gi|225433269|ref|XP_002285469.1| PREDICTED: uncharacterized protein LOC100261382 [Vitis vinifera]
Length = 751
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 97/168 (57%), Gaps = 15/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LY NLP S D ++L + + +G+ VEV N +TG SRG ++TM S+ I
Sbjct: 111 TKLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIE 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPED 218
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E
Sbjct: 171 NLDGSEYGGRTLRVNFSD-------------KPKPKLPLYPETEYKLFVGNLSWSVTSES 217
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L F +G V+ ARVL+D + +R +GF+ +S+ AE D AL SLNG
Sbjct: 218 LNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNG 265
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL S L ++F+ +G V+ V + ETG SRG G++ + A+ +
Sbjct: 203 KLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALES 262
Query: 161 LDGSDVGGREMRV 173
L+G ++ GR +RV
Sbjct: 263 LNGVELEGRAIRV 275
>gi|296083731|emb|CBI23720.3| unnamed protein product [Vitis vinifera]
Length = 283
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 97/167 (58%), Gaps = 15/167 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ VEV N +TG SRG ++TM S+ I
Sbjct: 112 KLYFGNLPYSCDSAQLAGIIQNYGSPELVEVLYNRDTGRSRGFAFVTMSSVEDCNAVIEN 171
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E L
Sbjct: 172 LDGSEYGGRTLRVNFSDK-------------PKPKLPLYPETEYKLFVGNLSWSVTSESL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +G V+ ARVL+D + +R +GF+ +S+ AE D AL SLNG
Sbjct: 219 NQVFQEYGNVIGARVLYDGETGRSRGYGFVCYSTKAEMDTALESLNG 265
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 33 PTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEE 92
P L+ Y + + RS F ++ +V D AV+ + ++G + G + S +
Sbjct: 137 PELVEVLYNRDTG---RSRGFAFVTMSSVEDCNAVI--ENLDGSEYGGRTLRVNFSDKPK 191
Query: 93 PRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
P+ P +L+V NL S L ++F+ +G V+ V + ETG SRG G++
Sbjct: 192 PKLPLYPETEYKLFVGNLSWSVTSESLNQVFQEYGNVIGARVLYDGETGRSRGYGFVCYS 251
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFS 176
+ A+ +L+G ++ GR +R+ +
Sbjct: 252 TKAEMDTALESLNGVELEGRAIRISLA 278
>gi|116781814|gb|ABK22250.1| unknown [Picea sitchensis]
Length = 355
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP D L +MF G V VEV + +G SRG ++TM ++ A+ AI
Sbjct: 168 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 227
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
+G ++ GR +RV F R +N + P + +SPHK+YVGNL+W+V E L
Sbjct: 228 FNGFEIDGRSLRVNFP--EVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETL 285
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R G V+ A+V+ DR+ +R FGF+SFSS+AE +AA+S
Sbjct: 286 REALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVS 328
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV NL S L E G VL +V ++ ETG SRG G+++ S + A+
Sbjct: 268 PHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAV 327
Query: 159 IALDGSDVGGREMRV 173
+DG +V GR +RV
Sbjct: 328 SEMDGLEVEGRSIRV 342
>gi|116793682|gb|ABK26841.1| unknown [Picea sitchensis]
Length = 347
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP D L +MF G V VEV + +G SRG ++TM ++ A+ AI
Sbjct: 160 KLYVGNLPFDIDSEGLAKMFDESGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKK 219
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
+G ++ GR +RV F R +N + P + +SPHK+YVGNL+W+V E L
Sbjct: 220 FNGFEIDGRSLRVNFP--EVPRLQNGRSPARSPSNFGGFVDSPHKVYVGNLAWSVTSETL 277
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R G V+ A+V+ DR+ +R FGF+SFSS+AE +AA+S
Sbjct: 278 REALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVS 320
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV NL S L E G VL +V ++ ETG SRG G+++ S + A+
Sbjct: 260 PHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAV 319
Query: 159 IALDGSDVGGREMRV 173
+DG +V GR +RV
Sbjct: 320 SEMDGLEVEGRSIRV 334
>gi|168029395|ref|XP_001767211.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681466|gb|EDQ67892.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 192
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 102/175 (58%), Gaps = 13/175 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NLP D ++L + + FG+V VEV + E+G SRG ++TM + A+N I
Sbjct: 1 KLYIGNLPWQCDSAQLAGICQEFGSVELVEVIYDQESGRSRGFAFVTMATQEDAENVIER 60
Query: 161 LDGSDVGGREMRVRFSIDMNSR--------TRNAEALISPPKKIFVYESPHKLYVGNLSW 212
LDG DVGGR ++V F +R + +E P + + P+K++VGNLSW
Sbjct: 61 LDGHDVGGRPLKVSFPQSKQNRPSFPRGEGYQRSERAPRPAAR----DDPNKVFVGNLSW 116
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
V L+ F +G VV ARV++DR+ +R FGF+++S +E DAA+ SL+G
Sbjct: 117 GVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVSEVDAAIDSLDGA 171
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P +R P +++V NL D L E+F +G V+ V + E+G SRG G++T ++
Sbjct: 100 PAARDDPNKVFVGNLSWGVDNGALQELFSDYGKVVDARVVYDRESGRSRGFGFVTYSDVS 159
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
AI +LDG++ GRE+RV +
Sbjct: 160 EVDAAIDSLDGAEFDGRELRVNLA 183
>gi|147769830|emb|CAN61277.1| hypothetical protein VITISV_002607 [Vitis vinifera]
Length = 454
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 99/176 (56%), Gaps = 8/176 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A LYV NLP S S+L +F G+V+SVE+ + T SRG ++TMGS+ AK
Sbjct: 243 AEASRLYVGNLPYSMTSSQLGXVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKE 302
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSW 212
AI DGS VGGR ++V F R E + PK Y +SP+K+Y GNLSW
Sbjct: 303 AIRMFDGSQVGGRTVKVNFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSW 358
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ E LR+ F ++ A+V+++R+ +R FGF+SF+S ++AL+ VE
Sbjct: 359 RLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESALNAMBEVE 414
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 348 PYKIYAGNLSWRLTSEGLRDAFADXPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 407
Query: 159 IALDGSDVGGREMRVRFS 176
A+B +V GR +R+ +
Sbjct: 408 NAMBEVEVEGRPLRLNLA 425
>gi|449437482|ref|XP_004136521.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449528229|ref|XP_004171108.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 323
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 98/170 (57%), Gaps = 9/170 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NLP + S+L E+F G V+SV+V + T SRG ++TM ++ AK AI
Sbjct: 116 KLYIGNLPYAMTSSQLSEVFAEAGHVVSVQVIYDKVTDRSRGFAFVTMATLEEAKEAIRM 175
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKP 216
DGS +GGR +RV F R E + P+ Y +SPHK+Y GNL W +
Sbjct: 176 FDGSQIGGRTVRVNFP----EVPRGGEKEVMGPRIRSSYNKFVDSPHKIYAGNLGWGLTS 231
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ LR+ F ++SA++++DR +R FGF+SF + + ++AL S+NG
Sbjct: 232 QSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESALESMNG 281
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F+ +LS ++ + +G SRG G+++ + A++A+
Sbjct: 217 PHKIYAGNLGWGLTSQSLRDAFENQPGILSAKIIYDRASGKSRGFGFVSFETAEDAESAL 276
Query: 159 IALDGSDVGGREMRVRFS 176
+++G +V GR +R+ +
Sbjct: 277 ESMNGVEVEGRPLRLNIA 294
>gi|356534904|ref|XP_003535991.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 12/180 (6%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+V E S + +LY NLP S D ++L + + +G+ +EV + ++G SRG ++TM
Sbjct: 99 AVAEQDSDSSATKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDSGKSRGFAFVTM 158
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
I I LDG + GR +RV FS S+ + PK+ E+ HKL+VG
Sbjct: 159 SCIEDCNAVIENLDGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFVG 206
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
NLSW+V E L F +GTVV ARVL+D + +R +GF+ +S+ AE +AA++ VE
Sbjct: 207 NLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVE 266
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP---CELYVCNLPRS 110
GF V E+ V + ++GK+ +G + SS +P+ P +L+V NL S
Sbjct: 152 GFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWS 211
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F+ +GTV+ V + ETG SRG G++ + + A+ AL+ ++ GR
Sbjct: 212 VTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRA 271
Query: 171 MRVRFS 176
MRV +
Sbjct: 272 MRVSLA 277
>gi|224099981|ref|XP_002311696.1| predicted protein [Populus trichocarpa]
gi|118486835|gb|ABK95252.1| unknown [Populus trichocarpa]
gi|222851516|gb|EEE89063.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L M + +GT VEV + ETG SRG ++TM SI + I
Sbjct: 108 KLYFGNLPYNVDSAQLAGMIQEYGTPEMVEVLYHRETGRSRGFAFVTMSSIEDCETVIEN 167
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GR +RV F A PK+ E+ +KL++GNLSW+V E L
Sbjct: 168 LDGSQYMGRILRVNF------------ADKPKPKEPLYPETEYKLFIGNLSWSVTSESLT 215
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +G VV ARVL+D + +R +GF+ +S+ E + AL SLNG
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKEELETALQSLNG 261
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 33 PTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG---NEVDDDSS 89
P ++ Y + + RS F ++ ++ D E V+ + ++G +G D
Sbjct: 133 PEMVEVLYHRETG---RSRGFAFVTMSSIEDCETVI--ENLDGSQYMGRILRVNFADKPK 187
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+EP +L++ NL S L + F+ +G V+ V + ETG SRG G++
Sbjct: 188 PKEPLYPETEYKLFIGNLSWSVTSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYS 247
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFS 176
+ + A+ +L+G ++ GR +RV +
Sbjct: 248 TKEELETALQSLNGVELEGRALRVSLA 274
>gi|219363077|ref|NP_001137027.1| uncharacterized protein LOC100217196 [Zea mays]
gi|194698058|gb|ACF83113.1| unknown [Zea mays]
Length = 287
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + + VEV + TG SRG ++TM ++ + I
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GGR M+V F A PK+ E+ HKL+VGNLSW V E L
Sbjct: 177 LDGSLYGGRTMKVNF------------ADRPKPKQALYPETEHKLFVGNLSWTVTSEMLT 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FGR GTVV ARVL+D + +R +GF+ +S+ E D AL SLNG
Sbjct: 225 EAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNG 270
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F GTV+ V + ETG SRG G++ + A+ +
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LDGSDVGGREMRVRFSI 177
L+G ++ GREMRV ++
Sbjct: 268 LNGMEMEGREMRVNLAL 284
>gi|413939453|gb|AFW74004.1| hypothetical protein ZEAMMB73_282165 [Zea mays]
Length = 287
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/166 (40%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + + VEV + TG SRG ++TM ++ + I
Sbjct: 117 KLYFGNLPYNCDSAQLAGIVQEYASPEMVEVLYDRTTGRSRGFAFVTMTTVQDCELVIKN 176
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GGR M+V F A PK+ E+ HKL+VGNLSW V E L
Sbjct: 177 LDGSLYGGRTMKVNF------------ADRPKPKQALYPETEHKLFVGNLSWTVTSEMLT 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FGR GTVV ARVL+D + +R +GF+ +S+ E D AL SLNG
Sbjct: 225 EAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSSLNG 270
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F GTV+ V + ETG SRG G++ + A+ +
Sbjct: 208 KLFVGNLSWTVTSEMLTEAFGRCGTVVGARVLYDGETGRSRGYGFVCYSTREEMDEALSS 267
Query: 161 LDGSDVGGREMRVRFSI 177
L+G ++ GREMRV ++
Sbjct: 268 LNGMEMEGREMRVNLAL 284
>gi|224091455|ref|XP_002309257.1| predicted protein [Populus trichocarpa]
gi|222855233|gb|EEE92780.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 105/195 (53%), Gaps = 11/195 (5%)
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
+E ++D + D V+++ VE ++ +LYV NLP S SEL E+F+
Sbjct: 76 TEENTTALDDPQSETDEFDQEIVEEEGDVEAIKA-TEEGKLYVGNLPYSMTSSELTEVFE 134
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V S EV + T SRG G++TMGS+ AK AI +G+ GGR +RV F
Sbjct: 135 EAGRVFSAEVIYDRVTDRSRGFGFVTMGSVEEAKKAIQMFNGTQFGGRSVRVNFP----E 190
Query: 182 RTRNAEALISPPK-----KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R E + P+ K F+ +S HK+Y GNL W + E LR+ F V+SA+V++
Sbjct: 191 VPRGGEREVMGPRIQSGYKGFI-DSEHKIYAGNLGWRLTSEGLRDAFANQPGVLSAKVIY 249
Query: 237 DRKGQTTRVFGFISF 251
+R + +R FGF+SF
Sbjct: 250 ERDSRRSRGFGFVSF 264
>gi|356537206|ref|XP_003537120.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 298
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 5/166 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S S+L + F G V+SVE+ + SRG ++TMGS+ A+ AI
Sbjct: 90 LFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAERAIRMF 149
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DGS++GGR M+V F+ R ++ + FV +SPHK+Y GNL W + +DLR+
Sbjct: 150 DGSEIGGRIMKVNFTA---IPKRGKRLVMGSNYRGFV-DSPHKIYAGNLGWGLTSQDLRD 205
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F +SA+V+++R +R +GF+SF + + +AAL S+NG
Sbjct: 206 AFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAALNSMNGV 251
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAER 257
+L+VGNL +++ L FG G VVS +++D +R F F++ S DAER
Sbjct: 89 RLFVGNLPYSLLSSQLAQRFGEAGNVVSVEIVYDDIMDRSRGFAFVTMGSMEDAER 144
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL +L + F LS +V +G SRG G+++ + + A+
Sbjct: 186 PHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGRSRGYGFVSFETAEDVEAAL 245
Query: 159 IALDGSDVGGREMRVRFSIDMNS 181
+++G +V GR +R+ + D N+
Sbjct: 246 NSMNGVEVQGRPLRLNLATDKNT 268
>gi|115449577|ref|NP_001048500.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|47847880|dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|47848169|dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa Japonica
Group]
gi|113538031|dbj|BAF10414.1| Os02g0815200 [Oryza sativa Japonica Group]
gi|125584133|gb|EAZ25064.1| hypothetical protein OsJ_08857 [Oryza sativa Japonica Group]
gi|215695143|dbj|BAG90334.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737594|dbj|BAG96724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 316
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + T VEV + TG SRG ++TM +I + I
Sbjct: 146 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 205
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS GR MRV F+ P K+ +Y E+ HKL+VGNLSW V E L
Sbjct: 206 LDGSLYSGRTMRVNFAD-------------KPKPKLPLYPETEHKLFVGNLSWTVTSEML 252
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F + G VV ARVL+D + +R +GF+ +S+ E D AL SLNGT
Sbjct: 253 TEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGT 300
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L EMF+ G V+ V + ETG SRG G++ + A+ +
Sbjct: 237 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 296
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 297 LNGTELEGREIRVNLAL 313
>gi|15231200|ref|NP_190806.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
gi|681910|dbj|BAA06522.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|4886289|emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gi|14517544|gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|18700226|gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gi|21553418|gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
gi|332645419|gb|AEE78940.1| chloroplast RNA-binding protein 33 [Arabidopsis thaliana]
Length = 329
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWNLTSQGLK 236
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ FG V+ A+V+++R +R FGFISF S +AL+ VE
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVE 284
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 218 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 278 ATMNGVEVEGRALRLNLASEREKPT------VSPP 306
>gi|388506424|gb|AFK41278.1| unknown [Lotus japonicus]
Length = 199
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 96/158 (60%), Gaps = 11/158 (6%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
S+L E+F GTV+SVEV + T SRG ++TMGS++ AK AI DGS VGGR +RV
Sbjct: 4 SQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 63
Query: 174 RFSIDMNSRTRNAEALISPPK-----KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
F + E L+ PK + FV +S HK+Y GNL W V +DL++ F
Sbjct: 64 NFP----EVPKGGERLVMGPKIRNNNRDFV-DSSHKIYAGNLGWRVSSQDLKDVFAEQPG 118
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+VSA+V+++R +R FGF++F + + +AAL ++NG
Sbjct: 119 LVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 156
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 41/76 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL +L ++F ++S +V ++G SRG G++T + + A+
Sbjct: 94 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 153
Query: 161 LDGSDVGGREMRVRFS 176
++G +V GRE+R+ +
Sbjct: 154 MNGVEVQGRELRLNLA 169
>gi|681912|dbj|BAA06523.1| RNA-binding protein cp33 [Arabidopsis thaliana]
Length = 321
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 110 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 169
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 170 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWNLTSQGLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ FG V+ A+V+++R +R FGFISF S +AL+ VE
Sbjct: 229 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVE 276
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 210 PHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 269
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 270 ATMNGVEVEGRALRLNLASEREKPT------VSPP 298
>gi|17064758|gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
Length = 329
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 94/168 (55%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F GTV+ V++ + T SRG G++TMGSI AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQMF 177
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V F + I + +V +SPHK+Y GNL W + + L+
Sbjct: 178 NSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYV-DSPHKVYAGNLGWDLTSQGLK 236
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ FG V+ A+V+++R +R FGFISF S +AL+ VE
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVE 284
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F VL +V TG SRG G+++ S + ++A+
Sbjct: 218 PHKVYAGNLGWDLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSAL 277
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 278 ATMNGVEVEGRALRLNLASEREKPT------VSPP 306
>gi|125541605|gb|EAY88000.1| hypothetical protein OsI_09422 [Oryza sativa Indica Group]
Length = 318
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 93/168 (55%), Gaps = 15/168 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + + T VEV + TG SRG ++TM +I + I
Sbjct: 148 KLYFGNLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKN 207
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS GR MRV F+ P K+ +Y E+ HKL+VGNLSW V E L
Sbjct: 208 LDGSLYSGRTMRVNFAD-------------KPKPKLPLYPETEHKLFVGNLSWTVTSEML 254
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F + G VV ARVL+D + +R +GF+ +S+ E D AL SLNGT
Sbjct: 255 TEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSSLNGT 302
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L EMF+ G V+ V + ETG SRG G++ + A+ +
Sbjct: 239 KLFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEALSS 298
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 299 LNGTELEGREIRVNLAL 315
>gi|558629|emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
Length = 287
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 92/169 (54%), Gaps = 14/169 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ +EV + +TG SRG ++TM I I
Sbjct: 114 KLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDG + GR +RV FS P K +Y E+ HKL+VGNLSW+V E L
Sbjct: 174 LDGKEYLGRTLRVNFSN-------------KPKAKEPLYPETEHKLFVGNLSWSVTNEIL 220
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
F +GTVV ARVL+D + +R +GF+ FS+ E +AAL VE
Sbjct: 221 TQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVE 269
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVCNLPRS 110
GF V E+ V + ++GK+ +G + +EP +L+V NL S
Sbjct: 155 GFAFVTMSCIEDCNAVIENLDGKEYLGRTLRVNFSNKPKAKEPLYPETEHKLFVGNLSWS 214
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F+ +GTV+ V + ETG SRG G++ + + A+ AL+ ++ GR
Sbjct: 215 VTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCFSTKEEMEAALGALNDVELEGRA 274
Query: 171 MRVRFS 176
MRV +
Sbjct: 275 MRVSLA 280
>gi|2104687|emb|CAA66479.1| RNA- or ssDNA-binding protein [Vicia faba var. minor]
Length = 289
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 102/189 (53%), Gaps = 17/189 (8%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G + + + V E +R + LY NLP S D ++L + + +G+ VEV + +TG S
Sbjct: 101 GEKENGEEIVAEEDTRTK---LYFGNLPYSVDSAKLAGLIEEYGSAELVEVLYDRDTGKS 157
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY- 199
RG + TM + K I LDG + GR +RV FS P K +Y
Sbjct: 158 RGFAFATMTCVEDCKAVIENLDGKEFMGRTLRVNFSDK-------------PKAKESLYP 204
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E+ +KL++GNLSW V E L F GTVV ARV++D + +R +GF+S+++ +E +A
Sbjct: 205 ETEYKLFIGNLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEA 264
Query: 260 ALSLNGTVE 268
AL++ VE
Sbjct: 265 ALTIMNDVE 273
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVC 105
+S F ++ V D +AV+ + ++GK+ +G D +E +L++
Sbjct: 156 KSRGFAFATMTCVEDCKAVI--ENLDGKEFMGRTLRVNFSDKPKAKESLYPETEYKLFIG 213
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
NL L E F+ GTV+ V + ETG SRG G+++ + + + A+ ++ +
Sbjct: 214 NLSWKVTSEILTEAFQEHGTVVGARVIYDGETGNSRGYGFVSYANKSEMEAALTIMNDVE 273
Query: 166 VGGREMRVRFS 176
+ GR +RV +
Sbjct: 274 LEGRALRVSLA 284
>gi|242063480|ref|XP_002453029.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
gi|241932860|gb|EES06005.1| hypothetical protein SORBIDRAFT_04g037020 [Sorghum bicolor]
Length = 295
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 103/199 (51%), Gaps = 15/199 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+DE+ + DS S +LY NLP + D ++L + + + + V
Sbjct: 94 QDEVQDGEGGAVEGSSQDSRPSVAASTTTTTKLYFGNLPYNCDSAQLAGIVQEYASPEMV 153
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
EV + TG SRG ++TM ++ + I LDGS GGR M+V F+
Sbjct: 154 EVLYDRITGRSRGFAFVTMTTVQDCELVIKNLDGSLYGGRTMKVNFAD------------ 201
Query: 190 ISPPKKIFVY-ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P K+ +Y E+ HKL+VGNLSW V E L FGR G VV ARVL+D + +R +GF
Sbjct: 202 -RPKPKLPLYPETEHKLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGF 260
Query: 249 ISFSSDAERDAAL-SLNGT 266
+ +S+ E D A+ SLNGT
Sbjct: 261 VCYSTKEEMDEAISSLNGT 279
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L E F G V+ V + ETG SRG G++ + AI +
Sbjct: 216 KLFVGNLSWTVTSEMLTEAFGRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDEAISS 275
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 276 LNGTELEGREIRVNLAL 292
>gi|217073820|gb|ACJ85270.1| unknown [Medicago truncatula]
Length = 285
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 100 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 151 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 198
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E L F GTVV ARVL D + +R +GF+S+++ +E
Sbjct: 199 YPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 258
Query: 258 DAALSLNGTVE 268
D AL++ VE
Sbjct: 259 DTALAIMDNVE 269
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVCNLPRS 110
GF V E+ V ++GK+ +G D +EP +L+V NL +
Sbjct: 155 GFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWT 214
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F+ GTV+ V + ETG SRG G+++ + + A+ +D ++ GR
Sbjct: 215 VTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRT 274
Query: 171 MRVRFS 176
+RV +
Sbjct: 275 LRVSLA 280
>gi|357439793|ref|XP_003590174.1| 31 kDa ribonucleoprotein [Medicago truncatula]
gi|355479222|gb|AES60425.1| 31 kDa ribonucleoprotein [Medicago truncatula]
Length = 387
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 21/191 (10%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 202 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 252
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 253 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 300
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E L F GTVV ARVL D + +R +GF+S+++ +E
Sbjct: 301 YPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEM 360
Query: 258 DAALSLNGTVE 268
D AL++ VE
Sbjct: 361 DTALAIMDNVE 371
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVCNLPRS 110
GF V E+ V ++GK+ +G D +EP +L+V NL +
Sbjct: 257 GFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWT 316
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F+ GTV+ V + ETG SRG G+++ + + A+ +D ++ GR
Sbjct: 317 VTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRT 376
Query: 171 MRVRFS 176
+RV +
Sbjct: 377 LRVSLA 382
>gi|449432502|ref|XP_004134038.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449487476|ref|XP_004157645.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 276
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 12/162 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+LY NLP S D S+L + + +G +EV + TG SRG ++TM SI I
Sbjct: 102 TKLYFGNLPYSVDSSQLAAIVQDYGIAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIE 161
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDGS GR +RV FS PK+ E+ +KL+VGNLSW+V E L
Sbjct: 162 NLDGSAYMGRILRVNFSDK------------PKPKEPLYPETEYKLFVGNLSWSVTSEIL 209
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +G VV ARV++D + +R +GF+S+S+ +E + AL
Sbjct: 210 TQAFQEYGNVVGARVIYDGETGKSRGYGFVSYSTKSEMETAL 251
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
D +EP +L+V NL S L + F+ +G V+ V + ETG SRG G+
Sbjct: 179 DKPKPKEPLYPETEYKLFVGNLSWSVTSEILTQAFQEYGNVVGARVIYDGETGKSRGYGF 238
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
++ + + + A+ ++ ++ GR +RV +
Sbjct: 239 VSYSTKSEMETALETINELELEGRVIRVSLA 269
>gi|255574887|ref|XP_002528350.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532218|gb|EEF34022.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 285
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + +GT VEV + +TG SRG ++TM ++ I
Sbjct: 114 KLYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIEN 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDGS GR +RV FS PK+ E+ HKL+VGNLSW+V E L
Sbjct: 174 LDGSQFMGRILRVNFSDK------------PKPKEPLYPETEHKLFVGNLSWSVTSESLV 221
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +G +V ARVL+D + +R +GF+ +++ +E + AL SLNG
Sbjct: 222 EAFQEYGNIVGARVLYDGETGRSRGYGFVCYATRSEMENALVSLNG 267
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 33 PTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG---NEVDDDSS 89
P L+ Y + + RS F ++ V D AV+ + ++G +G D
Sbjct: 139 PELVEVLYDRDTG---RSRGFAFVTMSTVEDCNAVI--ENLDGSQFMGRILRVNFSDKPK 193
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+EP +L+V NL S L+E F+ +G ++ V + ETG SRG G++
Sbjct: 194 PKEPLYPETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGARVLYDGETGRSRGYGFVCYA 253
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFS 176
+ + +NA+++L+G ++ GR MRV +
Sbjct: 254 TRSEMENALVSLNGVELEGRAMRVSLA 280
>gi|224138286|ref|XP_002322776.1| predicted protein [Populus trichocarpa]
gi|222867406|gb|EEF04537.1| predicted protein [Populus trichocarpa]
Length = 324
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 115/235 (48%), Gaps = 11/235 (4%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS 88
F S P L + KL+S S S P + A D V ++ I +D+ + D
Sbjct: 36 FLSKPFLKPLKPLKLNSQNSNSLPHSHGTFAATFDNFEVETDENIAAQDDPQSETDEFDQ 95
Query: 89 SVEEPRS--------RARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+ E +AR +LYV NLP S SEL E+F+ G V EV + T
Sbjct: 96 EIVEEEEEEEDVVAIKAREEGKLYVGNLPYSMTSSELAEVFEEAGRVFGAEVICDRVTDR 155
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFV 198
SRG G++TM S+ AK AI +GS VGGR +RV F + E I K F+
Sbjct: 156 SRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRVNFPEVPRGGEREVMEPRIRSGYKGFI 215
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+S HK+Y GNL W + E L + F ++SA+V+++R +R FGF+SF S
Sbjct: 216 -DSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSAKVIYERDTGRSRGFGFVSFDS 269
>gi|297816516|ref|XP_002876141.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
gi|297321979|gb|EFH52400.1| RNA-binding protein cp33 [Arabidopsis lyrata subsp. lyrata]
Length = 330
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 93/168 (55%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + SEL ++F G V+ V++ + T SRG G++TMG+I AK AI
Sbjct: 119 LYVGNLPYTITSSELSQLFGEAGNVVDVQIVYDKVTDRSRGFGFVTMGTIEEAKEAIQMF 178
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S +GGR ++V + I + +V +SPHK+Y GNL W + + L+
Sbjct: 179 NSSQIGGRTVKVNLPEVPRGGEREVMRTKIRDNNRSYV-DSPHKIYAGNLGWNLTSQGLK 237
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ FG V+ A+V+++R +R FGFISF S + +AL+ VE
Sbjct: 238 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSALATMNGVE 285
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL + L + F VL +V TG SRG G+++ S ++A+
Sbjct: 219 PHKIYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAEDVQSAL 278
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
++G +V GR +R+ + + T +SPP
Sbjct: 279 ATMNGVEVEGRALRLNLASERERPT------VSPP 307
>gi|357440093|ref|XP_003590324.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479372|gb|AES60575.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 311
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 24/192 (12%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + E +SR L+V NLP S S+L ++F G V+SVE+ + T SRG
Sbjct: 97 DLNQEAESTQSR----RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFA 152
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRF--------SIDMNSRTRNAEALISPPKKI 196
++TMG++ A+ AI DG+ VGGR ++V F + M S R
Sbjct: 153 FVTMGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG----------- 201
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+SPHK+Y GNL W + + LR F + ++SA+V+++R +R +GF+SF + +
Sbjct: 202 -YVDSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAED 260
Query: 257 RDAALSLNGTVE 268
+ ALS VE
Sbjct: 261 VEVALSAMNGVE 272
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y+ NLP S D +EL + + G+V VEV + TG SRG + TM S+ A +
Sbjct: 112 KVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDANALVEN 171
Query: 161 LDGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
LDGS GGR +RV S+ +N R ++ S + + H++Y+GNLSW V
Sbjct: 172 LDGSQYGGRTLRVNLREEASRSLRVNLRDKSR----SEQRNQTNNDGQHRVYIGNLSWDV 227
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
E L F G ++ A+++ DR+ +R FGFI+FS+ +E +AA+ SLNG
Sbjct: 228 NEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVASLNG 279
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+Y+ NL S+D++E L E+F G +L ++ + ETG SRG G++T + + A+ A+
Sbjct: 218 VYIGNL--SWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITFSTQSEAEAAVA 275
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAE 187
+L+G ++ GR MRV D+ +RN E
Sbjct: 276 SLNGKELEGRAMRV----DLALSSRNIE 299
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 128/261 (49%), Gaps = 22/261 (8%)
Query: 10 TSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGF---RSVLAVVDEEA 66
T SLFT PP+ P F+ L + ++ L++ RS F S A +EE
Sbjct: 25 TKPSLFT---PPSKPLTLQFSCLNSSVSL---SLAAPTHRSPLVTFVAQTSDWAQQEEEQ 78
Query: 67 VVVEDEINGKD-NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125
+ E E + G + D+S VE P +L+V NLP D +L +F+ GT
Sbjct: 79 SLAETEAGLESWEPNGEDAGDESFVEPPEE----AKLFVGNLPYDVDSQKLAMLFEQAGT 134
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V EV N ET SRG G++TM ++ A++A+ + D+ GR + V + +R
Sbjct: 135 VEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVNKASPRGTRPER 194
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
S +ES +YVGNL W V L+ F + G VV+ARV++DR+ +R
Sbjct: 195 PPPRRS-------FESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRG 247
Query: 246 FGFISFSSDAE-RDAALSLNG 265
FGF++ S + E DA +L+G
Sbjct: 248 FGFVTMSDETEMNDAVAALDG 268
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V++ V + E+G SRG G++TM +A+ AL
Sbjct: 207 IYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAAL 266
Query: 162 DGSDVGGREMRVRFSID 178
DG + GR ++V + D
Sbjct: 267 DGESLDGRAIKVSVAED 283
>gi|224107511|ref|XP_002314506.1| predicted protein [Populus trichocarpa]
gi|222863546|gb|EEF00677.1| predicted protein [Populus trichocarpa]
Length = 279
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 91/166 (54%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D ++L + + +G+ VEV + ETG SRG ++TM SI I
Sbjct: 108 KLYFGNLPYNVDSAQLAGIIQEYGSPEMVEVLYHRETGRSRGFAFVTMSSIEDCNAVIEN 167
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LD S GR +RV FS + PK+ E+ +KL+VGNLSW+ E L
Sbjct: 168 LDESQYMGRILRVNFSDN------------PKPKEPLYPETEYKLFVGNLSWSATSESLT 215
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +G VV ARVL+D + +R +GF+ +S+ AE AL SL+G
Sbjct: 216 QAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDG 261
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVE-DEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
RS F ++ ++ D AV+ DE + D+ +EP +L+V NL
Sbjct: 146 RSRGFAFVTMSSIEDCNAVIENLDESQYMGRILRVNFSDNPKPKEPLYPETEYKLFVGNL 205
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
S L + F+ +G V+ V + ETG SRG G++ + + A+++LDG ++
Sbjct: 206 SWSATSESLTQAFQEYGNVVGARVLYDGETGKSRGYGFVCYSTKAEMQTALVSLDGVELE 265
Query: 168 GREMRVRFS 176
GR +RV +
Sbjct: 266 GRALRVSLA 274
>gi|168054274|ref|XP_001779557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669038|gb|EDQ55633.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 96/168 (57%), Gaps = 2/168 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP + D ++L E+ GTV VEV + +G SRG ++TM S + A+ I A
Sbjct: 24 KVYVGNLPWTCDSAQLAEICSQHGTVDVVEVIYDKLSGRSRGFAFVTMASHDDAQALINA 83
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPP-KKIFVYESPHKLYVGNLSWAVKPEDL 219
LDGSD+GGR ++V F + R ++ PP + P+KL+VGN+ W +
Sbjct: 84 LDGSDMGGRALKVNFPQSQKDKPRFEKSEARPPTADRRPRDDPNKLFVGNIPWGCDEAAM 143
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+ F +G+VV A++++DR +R FGF++ + A+ +L+GT
Sbjct: 144 TSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGDAQTAMENLDGT 191
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 54/83 (65%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R R P +L+V N+P D + + +F P+G+V+ ++ + ++G SRG G++TM +
Sbjct: 121 RPRDDPNKLFVGNIPWGCDEAAMTSLFSPYGSVVDAKIVYDRDSGRSRGFGFVTMEKVGD 180
Query: 154 AKNAIIALDGSDVGGREMRVRFS 176
A+ A+ LDG+++ GRE+RV F+
Sbjct: 181 AQTAMENLDGTELDGRELRVNFA 203
>gi|2330647|emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gi|10179830|gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
Length = 291
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 101/209 (48%), Gaps = 17/209 (8%)
Query: 60 AVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEM 119
++D E E+E G+D GG+ EP A+ L+V NLP D +L +
Sbjct: 79 GLIDWEPEAAENETGGEDYAGGD-------FAEPSEDAK---LFVGNLPYDVDSEKLAML 128
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F+P GTV EV N ET SRG G++TM ++ A+ + D GR + V
Sbjct: 129 FEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEAGAAKFNRYDYNGRPLTV------ 182
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
N + +E ++YVGNLSW + L F G VVSARV++DR+
Sbjct: 183 NKAAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRE 242
Query: 240 GQTTRVFGFISFSSDAE-RDAALSLNGTV 267
+R FGF++ S + E DA +L+G +
Sbjct: 243 TGRSRGFGFVTMSDEKEMNDAIAALDGQI 271
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D S L ++F G V+S V + ETG SRG G++TM +AI AL
Sbjct: 208 VYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEKEMNDAIAAL 267
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
DG + GR ++V + D R
Sbjct: 268 DGQILEGRTIKVSVAEDRPRR 288
>gi|388493590|gb|AFK34861.1| unknown [Medicago truncatula]
Length = 285
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 78 NVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
N+GG +V E +R + LY NLP S D + L + + +G+ +EV + +T
Sbjct: 100 NIGGE------TVAEVDTRTK---LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G SRG ++TM + I LDG + GR +RV FS PK+
Sbjct: 151 GKSRGFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDK------------PKPKEPL 198
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
E+ +KL+VGNL+W V E F GTVV ARVL D + R +GF+S+++ +E
Sbjct: 199 YPETEYKLFVGNLAWTVTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEM 258
Query: 258 DAALSLNGTVE 268
D AL++ VE
Sbjct: 259 DTALAIMDNVE 269
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVCNLPRS 110
GF V E+ V ++GK+ +G D +EP +L+V NL +
Sbjct: 155 GFAFVTMSCVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWT 214
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
+ F+ GTV+ V + ETG RG G+++ + + A+ +D ++ GR
Sbjct: 215 VTFESFTQAFQEHGTVVGARVLFDGETGKFRGYGFVSYATKSEMDTALAIMDNVELEGRT 274
Query: 171 MRVRFS 176
+RV +
Sbjct: 275 LRVSLA 280
>gi|326487400|dbj|BAJ89684.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511469|dbj|BAJ87748.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511763|dbj|BAJ92026.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326514088|dbj|BAJ92194.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527877|dbj|BAJ88990.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326534068|dbj|BAJ89384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + VEV + TG SRG ++TM ++ + I
Sbjct: 135 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 194
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M R + PK E+ HKL+VGNLSW V PE L
Sbjct: 195 LDGTLYSGRTMRV----NMADRPK--------PKAPLYPETEHKLFVGNLSWTVTPEMLT 242
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+ F R G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT
Sbjct: 243 DAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGT 289
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 226 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 285
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 286 LNGTEIEGREIRVNLAL 302
>gi|326523287|dbj|BAJ88684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 422
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 13/167 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + VEV + TG SRG ++TM ++ + I
Sbjct: 251 KLYFGNLPYNCDSALLAGIVQDHAVPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 310
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M R + PK E+ HKL+VGNLSW V PE L
Sbjct: 311 LDGTLYSGRTMRV----NMADRPK--------PKAPLYPETEHKLFVGNLSWTVTPEMLT 358
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+ F R G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT
Sbjct: 359 DAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGT 405
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 342 KLFVGNLSWTVTPEMLTDAFQRCGNVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 401
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 402 LNGTEIEGREIRVNLAL 418
>gi|388500434|gb|AFK38283.1| unknown [Lotus japonicus]
Length = 273
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 89/165 (53%), Gaps = 13/165 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + +G+ +EV + ++G SRG ++TM + I
Sbjct: 102 KLYFGNLPYSVDSAQLAGLIEEYGSAELIEVLYDRDSGKSRGFAFVTMSCVEDCNTVIEN 161
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG + GR +RV S PK+ E+ HKL+VGNLSW V E L
Sbjct: 162 LDGKEFLGRTLRVNLSDK------------PKPKEPLYPETEHKLFVGNLSWTVTSESLI 209
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264
F +GTVV ARVL+D + +R +GF+ +S +E + AL SLN
Sbjct: 210 QVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLN 254
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---EVDDDSSVEEPRSRARPCELYVCNLPRS 110
GF V E+ V + ++GK+ +G + D +EP +L+V NL +
Sbjct: 143 GFAFVTMSCVEDCNTVIENLDGKEFLGRTLRVNLSDKPKPKEPLYPETEHKLFVGNLSWT 202
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L+++F+ +GTV+ V + ETG SRG G++ + + A+I+L+ ++ GR
Sbjct: 203 VTSESLIQVFQEYGTVVGARVLYDGETGRSRGYGFVCYSKRSELETALISLNNVELEGRA 262
Query: 171 MRVRFS 176
+RV +
Sbjct: 263 IRVSLA 268
>gi|359806610|ref|NP_001241528.1| uncharacterized protein LOC100820203 [Glycine max]
gi|255645445|gb|ACU23218.1| unknown [Glycine max]
gi|255645775|gb|ACU23380.1| unknown [Glycine max]
Length = 289
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 12/153 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D ++L + + FG+ +EV + +TG SRG ++TM I I
Sbjct: 118 KLYFGNLPYSVDSAKLAGLIQDFGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVIEN 177
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG + GR +RV FS S+ + PK+ E+ HKL+VGNLSW+V E L
Sbjct: 178 LDGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFVGNLSWSVTNEILT 225
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +GTVV ARVL+D + +R +GF+ +S+
Sbjct: 226 QAFQEYGTVVGARVLYDGETGRSRGYGFVCYST 258
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP---CELYVCNLPRS 110
GF V E+ V + ++GK+ +G + SS +P+ P +L+V NL S
Sbjct: 159 GFAFVTMSCIEDCNAVIENLDGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWS 218
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F+ +GTV+ V + ETG SRG G++ + + A+ AL+ ++ GR
Sbjct: 219 VTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTKAEMEAALAALNDVELEGRA 278
Query: 171 MRVRFS 176
MRV +
Sbjct: 279 MRVSLA 284
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 26/253 (10%)
Query: 22 ATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG 81
+ P F+ P IN S S P ++ V + + E+E ++GG
Sbjct: 35 SKPHHSNFSLPPRPINLPLSLKSKTLRNSSP-----IVTFVSQTSDWPEEEEGEDGSIGG 89
Query: 82 NEVDDDSSVE--------EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V D S + EP A+ L+V NLP D L +F+ GTV EV
Sbjct: 90 TSVTVDESFDTEDGGKFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIY 146
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
N +T SRG G++TM ++ AK A+ + +V GR + V + SR P
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVNGRLLTVNIAAPRGSR---------PE 197
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
++ Y++ ++YVGNL W V + L+ F G VV ARV++DR+ +R FGF++ S+
Sbjct: 198 RQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSN 257
Query: 254 DAE-RDAALSLNG 265
+ E DA +L+G
Sbjct: 258 ENEVNDAIAALDG 270
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+PR +YV NLP D L ++F G V+ V + ETG SRG G++TM +
Sbjct: 199 QPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNE 258
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
N +AI ALDG ++ GR ++V
Sbjct: 259 NEVNDAIAALDGQNLEGRAIKV 280
>gi|357137588|ref|XP_003570382.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 305
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 13/167 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L + + T VEV + TG SRG ++TM ++ + I
Sbjct: 134 KLYFGNLPYNCDSALLAGIVQDHATPEMVEVLYDRTTGRSRGFAFVTMSTLEDCERVIKN 193
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+ GR MRV +M + + PK+ E+ HKL+VGNLSW V PE L
Sbjct: 194 LDGTLYSGRTMRV----NMADKPK--------PKEPLYPETEHKLFVGNLSWTVTPEMLT 241
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+ F + G VV ARVL+D + +R +GF+ +S+ E D A+ +LNGT
Sbjct: 242 DAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIETLNGT 288
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NL + L + F+ G V+ V + ETG SRG G++ + AI
Sbjct: 225 KLFVGNLSWTVTPEMLTDAFQQCGDVVGARVLYDGETGRSRGYGFVCYSTKEEMDQAIET 284
Query: 161 LDGSDVGGREMRVRFSI 177
L+G+++ GRE+RV ++
Sbjct: 285 LNGTEIEGREIRVNLAL 301
>gi|296089370|emb|CBI39142.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 92/159 (57%), Gaps = 8/159 (5%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
S+L ++F G+V+SVE+ + T SRG ++TMGS+ AK AI DGS VGGR ++V
Sbjct: 4 SQLGDVFNEAGSVISVEIVYDRVTDRSRGFAFVTMGSVQEAKEAIRMFDGSQVGGRTVKV 63
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVY----ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV 229
F R E + PK Y +SP+K+Y GNLSW + E LR+ F +
Sbjct: 64 NFP----EVPRGGERAVMGPKIRSSYRGFVDSPYKIYAGNLSWRLTSEGLRDAFADHPGL 119
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ A+V+++R+ +R FGF+SF+S ++AL+ VE
Sbjct: 120 LGAKVIYERESGRSRGFGFLSFASAENAESALNAMNEVE 158
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++Y NL L + F +L +V E+G SRG G+L+ S +A++A+
Sbjct: 92 PYKIYAGNLSWRLTSEGLRDAFADHPGLLGAKVIYERESGRSRGFGFLSFASAENAESAL 151
Query: 159 IALDGSDVGGREMRVRFS 176
A++ +V GR +R+ +
Sbjct: 152 NAMNEVEVEGRPLRLNLA 169
>gi|226498114|ref|NP_001145579.1| uncharacterized protein LOC100279049 [Zea mays]
gi|195658417|gb|ACG48676.1| hypothetical protein [Zea mays]
Length = 120
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227
GRE+ V+ + D+ S +N P K ++E+PHK+YVGNL+W+V+P+DLR F + G
Sbjct: 3 GREVFVKLASDVISNRKNVNLAHITPTKDHIFETPHKVYVGNLAWSVQPQDLRELFTQCG 62
Query: 228 TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
TVVS R+L DRKG RV+GF+SFSS E + AL L+ TV
Sbjct: 63 TVVSTRLLTDRKGGRNRVYGFLSFSSAQELEEALKLDRTV 102
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D +L ++F G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 93 AKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVE 152
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP+ +E ++YVGNL W V L
Sbjct: 153 MFNRYDLNGRFLTVNKAAPRGSRPER------PPQ---AFEPSFRIYVGNLPWQVDDARL 203
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F G VV ARV++DR Q +R FGF++ SS+ E DA +L+G
Sbjct: 204 EQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 250
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V+ V + +T SRG G++TM S +AI AL
Sbjct: 189 IYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAAL 248
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 249 DGQSLDGRAIRV 260
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 20/223 (8%)
Query: 55 FRSVLAVVDEEAVVVEDEINGKDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF 111
F SVL+ D+ +V++D+ G D VG E + +EP A+ L+V NLP
Sbjct: 55 FVSVLSE-DDNTLVLDDQEQGGDFPSFVG--EAGETEEYQEPSEDAK---LFVGNLPYDI 108
Query: 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171
D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR +
Sbjct: 109 DSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168
Query: 172 RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231
V + SR P + ++ +++YVGN+ W + L F G VVS
Sbjct: 169 TVNKAAPRGSR---------PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVS 219
Query: 232 ARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG-TVESHTV 272
ARV+ DR+ +R FGF++ SS+AE A++ L+G T++ T+
Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTI 262
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ +YV N+P D + L ++F G V+S V + E+G SRG G++TM S
Sbjct: 184 PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEA 243
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI LDG + GR +RV
Sbjct: 244 EMSEAIANLDGQTLDGRTIRV 264
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D +L ++F G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 133 AKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVE 192
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP+ +E ++YVGNL W V L
Sbjct: 193 MFNRYDLNGRFLTVNKAAPRGSRPER------PPQ---AFEPSFRIYVGNLPWQVDDARL 243
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F G VV ARV++DR Q +R FGF++ SS+ E DA +L+G
Sbjct: 244 EQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAALDG 290
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V+ V + +T SRG G++TM S +AI AL
Sbjct: 229 IYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMSSETELNDAIAAL 288
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 289 DGQSLDGRAIRV 300
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 101/188 (53%), Gaps = 15/188 (7%)
Query: 81 GNEVDDDSS--VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
GNE +++S EP A+ L+V NLP D L ++F G V EV N ET
Sbjct: 110 GNEDEEESEQGFSEPPEEAK---LFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETD 166
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG G++TM ++ A+ A+ L+G D+ GR + V + SR PP++
Sbjct: 167 RSRGFGFVTMSTVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPER------PPRE--- 217
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-R 257
+E ++YVGNL W V L F G V+SARV+ DR+ +R FGF+S +S++E
Sbjct: 218 FEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMN 277
Query: 258 DAALSLNG 265
DA +L+G
Sbjct: 278 DAIAALDG 285
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR C +YV NLP D + L ++F G VLS V + ETG SRG G+++M S +
Sbjct: 215 PREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASES 274
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 275 EMNDAIAALDGQTLDGRAIRV 295
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
gi|9759027|dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|14532488|gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|18655365|gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
gi|332008535|gb|AED95918.1| chloroplast RNA-binding protein 31B [Arabidopsis thaliana]
Length = 289
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 117/249 (46%), Gaps = 26/249 (10%)
Query: 26 RFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD 85
RF F+ +N S S P V+ V + + E+E ++GG V
Sbjct: 39 RFNFSLSSRPVNLTLSLKSKTLRNSSP-----VVTFVSQTSNWAEEEEGEDGSIGGTSVT 93
Query: 86 DDSSVE--------EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
D S E EP A+ L+V NLP D L +F+ GTV EV N +T
Sbjct: 94 VDESFESEDGVGFPEPPEEAK---LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 150
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
SRG G++TM ++ A+ A+ + +V GR + V + SR P ++
Sbjct: 151 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSR---------PERQPR 201
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
VY++ ++YVGNL W V L F G VV ARV+ DR+ +R FGF+ S++ E
Sbjct: 202 VYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Query: 258 DAAL-SLNG 265
+ A+ +L+G
Sbjct: 262 NVAIAALDG 270
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+PR +YV NLP D L +F G V+ V + ETG SRG G++ M +
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
N AI ALDG ++ GR ++V + + R
Sbjct: 259 NEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>gi|224055617|ref|XP_002298568.1| predicted protein [Populus trichocarpa]
gi|118486956|gb|ABK95311.1| unknown [Populus trichocarpa]
gi|222845826|gb|EEE83373.1| predicted protein [Populus trichocarpa]
Length = 276
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 126/264 (47%), Gaps = 27/264 (10%)
Query: 5 TGFLTTSSSLFTKITPPATPKRFGF-TSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVD 63
T F T+ S F IT + P + F TS P+ ++ + S+ F ++ V
Sbjct: 15 TVFDTSIKSPFISIT--SKPIKVVFSTSFPSWVSLKTSNFST---------FNTIPLVAQ 63
Query: 64 EEAVVVEDEINGKDNVG-GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKP 122
+DE +D V G E D S E +LYV NLP + L ++F
Sbjct: 64 TSDWAQQDE---EDTVTLGEESFGDGSEETFPEPPEEAKLYVGNLPYDVNSENLAQLFDQ 120
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
GTV E+ N ET SRG G++TM +++ A+ AI D+ GR + V + SR
Sbjct: 121 AGTVEVAEIIYNRETDQSRGFGFVTMSTVDEAEKAIEKFHRYDLNGRFLTVNKAAPRGSR 180
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
P++ V++ +++YVGNL W V L F G VV+ARV+ DR+
Sbjct: 181 ----------PERPSVFKIAYRIYVGNLPWQVDDARLEQVFSEHGQVVNARVVCDRETGR 230
Query: 243 TRVFGFISFSSDAE-RDAALSLNG 265
+R FGF++ SS+ E DA +L+G
Sbjct: 231 SRGFGFVTMSSETELNDAIAALDG 254
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 59 LAVVDEEAVVVED----EINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDIS 114
++ VDE +E ++NG+ S E P +YV NLP D +
Sbjct: 146 MSTVDEAEKAIEKFHRYDLNGRFLTVNKAAPRGSRPERPSVFKIAYRIYVGNLPWQVDDA 205
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
L ++F G V++ V + ETG SRG G++TM S +AI ALDG + GR + V
Sbjct: 206 RLEQVFSEHGQVVNARVVCDRETGRSRGFGFVTMSSETELNDAIAALDGQSLDGRAITVN 265
Query: 175 FS 176
+
Sbjct: 266 IA 267
>gi|242048706|ref|XP_002462099.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
gi|241925476|gb|EER98620.1| hypothetical protein SORBIDRAFT_02g018650 [Sorghum bicolor]
Length = 242
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 125/262 (47%), Gaps = 37/262 (14%)
Query: 1 MAAATGFLTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLA 60
MA A L T +L + PA+ S P I+F+ S W R + A
Sbjct: 1 MATAISSLVTPPALHRRCLSPASVS----VSAPIRISFRAAAASQAWRRGLALRVSASSA 56
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
V++ VV AR +LYV N+PR+ EL +MF
Sbjct: 57 VLEAPEVVA---------------------------AR--KLYVGNVPRTVTNDELRDMF 87
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
GTV EV + T SR G++TM ++ A A+ AL+G++VGGR+++V +
Sbjct: 88 AAHGTVERAEVMYDKYTNRSRRFGFVTMSTVEEANAAVEALNGTEVGGRKIKVNVT---E 144
Query: 181 SRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
S N + + +FV +S +K+YVGNL+ V E L+N F G ++SA V H
Sbjct: 145 SFLPNIDRSAPESEPVFV-DSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGT 203
Query: 241 QTTRVFGFISFSSDAERDAALS 262
++ +GF++FSS+ E +AA++
Sbjct: 204 SKSKGYGFVTFSSEEEVEAAVA 225
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
Query: 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEV------------DDDSSVEEPRS 95
+RS GF ++ V EEA + +NG + VGG ++ D + EP
Sbjct: 105 NRSRRFGFVTMSTV--EEANAAVEALNGTE-VGGRKIKVNVTESFLPNIDRSAPESEPVF 161
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
++YV NL ++ L F G +LS VS P T S+G G++T S +
Sbjct: 162 VDSQYKVYVGNLAKNVTTEVLKNFFSEKGKILSATVSHIPGTSKSKGYGFVTFSSEEEVE 221
Query: 156 NAIIALDGSDVGGREMRV 173
A+ + +++ G+ +RV
Sbjct: 222 AAVATFNNAELEGQPIRV 239
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ DV GR + V N R E PP+ +E +++YVGN+ W + L
Sbjct: 196 MYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARL 246
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G
Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDG 293
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ + +YV N+P D + L ++F G V+S V + ETG SRG G++TM S
Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI LDG + GR +RV + D + R
Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 100 bits (249), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 128/269 (47%), Gaps = 29/269 (10%)
Query: 10 TSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVV 69
T SLF+ PP+ P F+ + + ++ S +R+H + + +A + A
Sbjct: 31 TKPSLFS---PPSKPLTLQFSCINSSVSL------SLAARAHRSPLVTRVAQTSDWAQQE 81
Query: 70 EDEIN--GKDNVGGNEVDDDSSVEEP-------RSRARPCE---LYVCNLPRSFDISELL 117
ED+ + G +E S EP S A P E L+V NLP D +L
Sbjct: 82 EDDTATFQDEEQGLSETQAGLSSWEPNGEDAGEESFAEPPEEAKLFVGNLPYDVDSQKLA 141
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
+F+ GTV EV N ET SRG G++TM ++ A+NA+ D GR + V +
Sbjct: 142 MLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENAVEKFSRYDFDGRLLTVNKAS 201
Query: 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+R PP+ F E +YVGNL W V L F G VV+ARV++D
Sbjct: 202 PRGTRPERP-----PPRHSF--EPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYD 254
Query: 238 RKGQTTRVFGFISFSSDAE-RDAALSLNG 265
R+ + +R FGF++ S + E +DA +L+G
Sbjct: 255 RETRRSRGFGFVTMSDETEMKDAVAALDG 283
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 93 PRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
PR P +YV NLP D + L ++F G V++ V + ET SRG G++TM
Sbjct: 212 PRHSFEPSLSIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDE 271
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
K+A+ ALDG + GR +RV + D R
Sbjct: 272 TEMKDAVAALDGQSLDGRPIRVSVAEDRPRR 302
>gi|15218972|ref|NP_176208.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|13194798|gb|AAK15561.1|AF348590_1 putative nucleic acid-binding protein [Arabidopsis thaliana]
gi|4249379|gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein
(RNP1) from Phaseolus vulgaris [Arabidopsis thaliana]
gi|21593720|gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
gi|222423361|dbj|BAH19654.1| AT1G60000 [Arabidopsis thaliana]
gi|332195527|gb|AEE33648.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 258
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E DD +S A +LY NLP + D + L ++ + F VEV N +TG SRG
Sbjct: 68 EKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRG 127
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
++TM ++ I LDG++ GR ++V F+ P K+ E+
Sbjct: 128 FAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKP-----------KPNKEPLYPETE 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
HKL+VGNLSW V E L F G VV ARV+ D +R +GF+ +SS AE + AL
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 262 SLNG 265
SL+G
Sbjct: 237 SLDG 240
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 8/182 (4%)
Query: 3 AATGFLTTSSSLFTKITPPATPKRFGFTSLPTLI-NFQYPKLSSC-WSRS--HPAGFRSV 58
A+ L +++ TK+ P +L +I +F P+L ++R GF V
Sbjct: 72 GASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFV 131
Query: 59 LAVVDEEAVVVEDEINGKDNVGG----NEVDDDSSVEEPRSRARPCELYVCNLPRSFDIS 114
E+ ++ D ++G + +G N D +EP +L+V NL +
Sbjct: 132 TMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSE 191
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
L F+ G V+ V + +TG SRG G++ S + A+ +LDG ++ GR +RV
Sbjct: 192 SLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVN 251
Query: 175 FS 176
+
Sbjct: 252 LA 253
>gi|297837519|ref|XP_002886641.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
gi|297332482|gb|EFH62900.1| hypothetical protein ARALYDRAFT_475310 [Arabidopsis lyrata subsp.
lyrata]
Length = 252
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 12/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP + D + L ++ + F VEV N +TG SRG ++TM ++ I
Sbjct: 80 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG++ GR ++V F+ P K+ E+ HKL+VGNLSW V E L
Sbjct: 140 LDGTEYLGRALKVNFADKP-----------KPNKEPLYPETEHKLFVGNLSWTVTSESLA 188
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++D +R +GF+ +SS AE + AL SL+G
Sbjct: 189 EAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDG 234
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG----NEVDDDSSVEEPRSRARPCELYVCNLPR 109
GF V E+ ++ D ++G + +G N D +EP +L+V NL
Sbjct: 121 GFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSW 180
Query: 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169
+ L E F+ G V+ V + +TG SRG G++ S + A+ +LDG ++ GR
Sbjct: 181 TVTSESLAEAFRECGDVVGARVVYDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGR 240
Query: 170 EMRVRFS 176
+RV +
Sbjct: 241 AIRVNLA 247
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 28 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 87
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 88 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 138
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 139 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 198
Query: 259 AALSLNG 265
A +L+G
Sbjct: 199 AIAALDG 205
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
PR P C +YV NLP D S L ++F G V+S V + ETG SRG G++TM S
Sbjct: 134 PRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSE 193
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
+ +AI ALDG + GR +RV
Sbjct: 194 SEVNDAIAALDGQTLDGRAVRV 215
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L E+F GTV EV N ET SRG G++TM ++ A+ A+
Sbjct: 121 AKLFVGNLPYDVDHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVE 180
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + +R PP+ +E ++YVGNL W V L
Sbjct: 181 MFNRYDINGRLLTVNKAAPRGARVDR------PPR---AFEPAFRMYVGNLPWQVDDARL 231
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR+ +R FGF++ S+ E D A+ +L+G
Sbjct: 232 EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQTELDDAIAALDG 278
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 48/90 (53%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ +YV NLP D + L ++F G V+ V + ETG SRG G++TM +
Sbjct: 208 PRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSTQT 267
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG + GR +RV + D R
Sbjct: 268 ELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 145
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 259 AALSLNG 265
A +L+G
Sbjct: 206 AIAALDG 212
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
PR P C +YV NLP D S L ++F G V+S V + ETG SRG G++TM S
Sbjct: 141 PRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSE 200
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
+ +AI ALDG + GR +RV
Sbjct: 201 SEVNDAIAALDGQTLDGRAVRV 222
>gi|149392545|gb|ABR26075.1| chloroplast 29 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 205
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/169 (37%), Positives = 95/169 (56%), Gaps = 9/169 (5%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 18 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 77
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWA 213
AI +G GR +RV NS R+ A SP ++S +KLYVGNL+W
Sbjct: 78 AIEQFNGYTFQGRPLRV------NSGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWG 131
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S
Sbjct: 132 VDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAIS 180
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL D S L +F GTVL +V + E+G SRG G++T GS NAI
Sbjct: 122 KLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISN 181
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 182 LDGVDLDGRQIRV 194
>gi|297608990|ref|NP_001062481.2| Os08g0557100 [Oryza sativa Japonica Group]
gi|255678651|dbj|BAF24395.2| Os08g0557100, partial [Oryza sativa Japonica Group]
Length = 194
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 9/163 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 16 AKVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIE 75
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 76 MLNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRL 126
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F G VV+A V++DR+ +R FGF+S +S E D A+S
Sbjct: 127 LQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAIS 169
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 103 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 162
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 163 ELDDAISALDGQELDGRPLRVNVAAERPQR 192
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+YVGNL + V E L F + G V A V+++R+ +R FGF++ S+ E D A+ +
Sbjct: 17 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 76
>gi|42407939|dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|125604308|gb|EAZ43633.1| hypothetical protein OsJ_28256 [Oryza sativa Japonica Group]
gi|215697914|dbj|BAG92121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 305
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 128 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 187
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 188 LNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRLL 238
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A V++DR+ +R FGF+S +S E D A+S L+G
Sbjct: 239 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 284
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 214 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 273
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 274 ELDDAISALDGQELDGRPLRVNVAAERPQR 303
>gi|125562527|gb|EAZ07975.1| hypothetical protein OsI_30233 [Oryza sativa Indica Group]
Length = 306
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP D L ++F+ G V EV N ETG SRG G++TM +I A AI
Sbjct: 129 KVYVGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEM 188
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ D+ GR + V + SR PP++ + + YVGNL W V L
Sbjct: 189 LNRYDINGRLLNVNRAAPRGSRVER------PPRQ---FAPAFRAYVGNLPWQVDDSRLL 239
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A V++DR+ +R FGF+S +S E D A+S L+G
Sbjct: 240 QLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 285
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S LL++F G V++ V + E+G SRG G+++M S
Sbjct: 215 PRQFAPAFRAYVGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKE 274
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 275 ELDDAISALDGQELDGRPLRVNVAAERPQR 304
>gi|125559266|gb|EAZ04802.1| hypothetical protein OsI_26976 [Oryza sativa Indica Group]
Length = 259
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 72 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 131
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ +G GR +RV R+ A SP ++S +KLYVGNL+W V
Sbjct: 132 AVEQFNGYTFQGRPLRVN---SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDN 188
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S
Sbjct: 189 STLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAIS 234
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 54 GFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDDDSSVEEPRSRAR----PCE 101
GF V EEA ++ NG + N G DD + PR +
Sbjct: 117 GFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNK 176
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D S L +F GTVL +V + E+G SRG G++T GS NAI L
Sbjct: 177 LYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNL 236
Query: 162 DGSDVGGREMRV 173
DG D+ GR++RV
Sbjct: 237 DGVDLDGRQIRV 248
>gi|115473531|ref|NP_001060364.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|22296371|dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza
sativa Japonica Group]
gi|113611900|dbj|BAF22278.1| Os07g0631900 [Oryza sativa Japonica Group]
gi|125601192|gb|EAZ40768.1| hypothetical protein OsJ_25244 [Oryza sativa Japonica Group]
Length = 264
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A +++V NLP S D ++L +F+ G+V VEV + +TG SRG G++TM + A
Sbjct: 77 AEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGA 136
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ +G GR +RV R+ A SP ++S +KLYVGNL+W V
Sbjct: 137 AVEQFNGYTFQGRPLRVN---SGPPPPRDDFAPRSPRGGGSNFDSSNKLYVGNLAWGVDN 193
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L N F GTV+ A+V++DR+ +R FGF+++ S E + A+S
Sbjct: 194 STLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAIS 239
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 62/132 (46%), Gaps = 12/132 (9%)
Query: 54 GFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDDDSSVEEPRSRAR----PCE 101
GF V EEA ++ NG + N G DD + PR +
Sbjct: 122 GFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPPRDDFAPRSPRGGGSNFDSSNK 181
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL D S L +F GTVL +V + E+G SRG G++T GS NAI L
Sbjct: 182 LYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEVNNAISNL 241
Query: 162 DGSDVGGREMRV 173
DG D+ GR++RV
Sbjct: 242 DGVDLDGRQIRV 253
>gi|357440407|ref|XP_003590481.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|355479529|gb|AES60732.1| 30 kDa ribonucleoprotein [Medicago truncatula]
gi|388503166|gb|AFK39649.1| unknown [Medicago truncatula]
Length = 280
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 13 SLFTKITPPATPKRFGFTSLPTL--------INFQYPKLSSCWSRSHPAGFRSVLAV--- 61
SLFTK +P F+SLP+L +F L S SH F S +AV
Sbjct: 12 SLFTKNSPQC------FSSLPSLSLNPNFKPFSFSSVSLRPSLSISH--RFISRVAVSSE 63
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
D+E +D DD+ P R L+V NLP S D ++L E+F+
Sbjct: 64 FDQEEDTFDD-------------GDDTPSYSPNQR-----LFVGNLPFSVDSAQLAEIFE 105
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V VEV + TG SRG G++TM S + A L+G V GRE+RV
Sbjct: 106 NAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPP 165
Query: 182 RTRNAEALISP---------PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
R+ N+ +P P + + ++++VGNL+W V L + FG G V+ A
Sbjct: 166 RSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEA 225
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+V++DR+ +R FGF++FSS E D+A+ +L+G
Sbjct: 226 KVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L +F G VL +V + E+G SRG G++T S + +AI L
Sbjct: 198 VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTL 257
Query: 162 DGSDVGGREMRV 173
DG+D+ GR +RV
Sbjct: 258 DGADLNGRAIRV 269
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
gi|222858766|gb|EEE96313.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 63 DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEM 119
D E V E E G+D + + + P E ++V NLP D +L +
Sbjct: 109 DFEGKVPEWEAEGEDAAATEAIRGEGESGDEEGFVEPPEEAKIFVGNLPYDVDSEKLAML 168
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F+ GTV EV N ET SRG G++TM ++ ++ A+ L D+ GR + V +
Sbjct: 169 FEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRFLTVNKAAPR 228
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
SR PP+ V E +++YVGNL W V L F G VVSARV+ DR+
Sbjct: 229 GSRPER------PPR---VSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRE 279
Query: 240 GQTTRVFGFISFSSDAE-RDAALSLNG 265
+R FGF++ S+++E DA +L+G
Sbjct: 280 TNRSRGFGFVTMSTESELNDAIAALDG 306
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+S V + ET SRG G++TM + +
Sbjct: 236 PRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRETNRSRGFGFVTMSTES 295
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
+AI ALDG ++ GR +RV + + RT
Sbjct: 296 ELNDAIAALDGQNLDGRPIRVNVAEERPRRT 326
>gi|168033890|ref|XP_001769447.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679367|gb|EDQ65816.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + D ++L E+ GTV VEV + +G SRG ++TM + A+ I A
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+D+GGR ++V + + R + P+ + +KL+VGNLSW L
Sbjct: 105 LDGTDMGGRPLKVNYPQSQKDKPRVERS--ERPR-----DDANKLFVGNLSWGCDEAALY 157
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+ F +GTVV A+V+ DR +R FGF++ S
Sbjct: 158 SFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMES 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E PR A +L+V NL D + L F +GTV+ +V + ++G SRG G++TM S
Sbjct: 133 ERPRDDAN--KLFVGNLSWGCDEAALYSFFSEYGTVVDAKVVFDRDSGRSRGFGFVTMES 190
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
+A AI LDG+++ GR +RV +
Sbjct: 191 AAAANAAIENLDGAELDGRRLRVNLA 216
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-S 262
KLYVGNL W L GTV V++D+ +R F F++ ++ + A + +
Sbjct: 45 KLYVGNLPWTCDSAQLAEICSDHGTVDVVEVIYDKISGRSRGFAFVTMATPEDAQAVINA 104
Query: 263 LNGT 266
L+GT
Sbjct: 105 LDGT 108
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 99/197 (50%), Gaps = 15/197 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
ED +D G +V + + EP A+ L+V NL D L +F+ GTV
Sbjct: 102 EDSFESQDAEG--DVSEGAEFPEPSEEAK---LFVGNLAYDVDSQALAMLFEQAGTVEIA 156
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
EV N ET SRG G++TM ++ A+ A+ + D+ GR + V + SR
Sbjct: 157 EVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSR------- 209
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
P + VYE ++YVGNL W V L F G VV ARV++DR+ +R FGF+
Sbjct: 210 --PERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFV 267
Query: 250 SFSSDAE-RDAALSLNG 265
+ S++ E DA +L+G
Sbjct: 268 TMSNENELNDAIAALDG 284
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM + N
Sbjct: 214 PRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNEN 273
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG ++ GR +RV
Sbjct: 274 ELNDAIAALDGQNMEGRAIRV 294
>gi|168054234|ref|XP_001779537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669018|gb|EDQ55613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 194
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + D ++L E+ +V +V+V + ++G SRG ++TM + A++ I
Sbjct: 1 KLYVGNLPWTCDSAQLAEICGDISSVEAVDVVYDQQSGRSRGFAFVTMSTNEGAQSVIDR 60
Query: 161 LDGSDVGGREMRVRFSIDMNSRT---------RNAEALISPPKK--IFVYESPHKLYVGN 209
LDGSD GGR ++V F +R R PP++ V ++ +K+++GN
Sbjct: 61 LDGSDFGGRPLKVSFPQPRENRDNKPRFGNNERGDRRSDRPPRQGSDRVLDNTNKMFIGN 120
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
LSW+ + L F +G+VV A+V++DR +R FGF++ S+ +E +A +L+G
Sbjct: 121 LSWSCDADALVQVFSEYGSVVDAKVVYDRDTGKSRGFGFVTMSAASEVSNAVQNLDGA 178
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 80 GGNEVDDDSSVEEPRSRA-----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
G NE D S PR + ++++ NL S D L+++F +G+V+ +V +
Sbjct: 89 GNNERGDRRSDRPPRQGSDRVLDNTNKMFIGNLSWSCDADALVQVFSEYGSVVDAKVVYD 148
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+TG SRG G++TM + + NA+ LDG++ GREMRV
Sbjct: 149 RDTGKSRGFGFVTMSAASEVSNAVQNLDGAEFEGREMRV 187
>gi|357157795|ref|XP_003577917.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTVL +V + +G SR G++TM S+ A AI +
Sbjct: 70 KLYVGNIPRTVTNDELRAMFADHGTVLRADVMYDKYSGRSRRFGFVTMSSVEEANAAIES 129
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N + P+ FV +S +K+YVGNL+ V E L+
Sbjct: 130 LNETEVGGRKIKVNVT---ESFLPNIDPSAPEPEPAFV-DSQYKVYVGNLAKTVTTEVLK 185
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
N F G V+SA V ++ +GF++FSS+ E +AA+S
Sbjct: 186 NFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVS 227
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 49 RSHPAGFRSVLAVVDEEAVVV---EDEING---KDNVGGN---EVDDDSSVEEPRSRARP 99
RS GF ++ +V + A + E E+ G K NV + +D + EP
Sbjct: 108 RSRRFGFVTMSSVEEANAAIESLNETEVGGRKIKVNVTESFLPNIDPSAPEPEPAFVDSQ 167
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NL ++ L F G VLS VSR P T S+G G++T S + A+
Sbjct: 168 YKVYVGNLAKTVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVS 227
Query: 160 ALDGSDVGGREMRV 173
+ +++ G+ +RV
Sbjct: 228 TFNNTELEGQPIRV 241
>gi|326516784|dbj|BAJ96384.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYDISGRLLNVNRAAQRGSRVER------PPRR---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 88 SSVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S VE P R A YV NLP + S L++MF G V++ + + ETG SRG G++
Sbjct: 186 SRVERPPRRFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFV 245
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
TM S +AI ALDG ++ GR +RV + + R
Sbjct: 246 TMASKEDLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|226533248|ref|NP_001149356.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195626620|gb|ACG35140.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414884785|tpg|DAA60799.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 251
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 4/197 (2%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V S+V E +LYV N+PR+ EL +MF GTV EV + T SR
Sbjct: 53 VSASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRF 112
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
G++TM + A A+ AL+G++VG R+++V + S N + P+ +FV +S +
Sbjct: 113 GFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQY 168
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+YVGNL+ V E L+N F G ++SA V H ++ +GF++FSS+ E +AA++
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 264 NGTVESHTVAFQPLFPF 280
S + F PF
Sbjct: 229 FNNAVSFSCKFYAFLPF 245
>gi|388512737|gb|AFK44430.1| unknown [Medicago truncatula]
Length = 291
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 109/217 (50%), Gaps = 16/217 (7%)
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSS----VEEPRSRARPCELYVCNLPRSFDISELL 117
+DEEA + D D DDS+ VE P +L+V N P D +L
Sbjct: 71 LDEEAGLSLDWEPTADAAETETGADDSAEGYFVEPPED----AKLFVGNFPFDVDSEKLA 126
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
+F GTV EV N +T +SRG G++TM ++ A++A+ +G D GR + V +
Sbjct: 127 MLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKAS 186
Query: 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
SR E P+ +E ++YV NL+W V L F G +VSARV++D
Sbjct: 187 PKGSRPERTE---RAPR---TFEPVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYD 240
Query: 238 RKGQTTRVFGFISFSSDAE-RDAALSLNG-TVESHTV 272
R+ +R FGF++ S + E DA +L+G ++E T+
Sbjct: 241 RETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTI 277
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------EPRSRARPCELYV 104
GF V EEA ++ NG D G + V + +S + PR+ +YV
Sbjct: 151 GFGFVTMNTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYV 210
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NL D S L ++F G ++S V + ETG SRG G++TM +AI ALDG
Sbjct: 211 ANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQ 270
Query: 165 DVGGREMRVRFSIDMNSR 182
+ GR +RV + D R
Sbjct: 271 SLEGRTIRVSVAEDRPRR 288
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223550401|gb|EEF51888.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 319
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP D +L +F+ GTV EV N ET SRG G+++M ++ A+ A+
Sbjct: 141 AKIFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVE 200
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
D+ GR + V + SR PP+ V+E +++YVGNL W V L
Sbjct: 201 MFHRHDLDGRLLTVNKAAPRGSRPER------PPR---VFEPGYRIYVGNLPWDVDNARL 251
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F G VV ARV++DR +R FGF++ S++ E DA +L+G
Sbjct: 252 EQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDG 298
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V+ V + +TG SRG G++TM + +AI AL
Sbjct: 237 IYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGRSRGFGFVTMSTETELNDAIAAL 296
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 297 DGRSLDGRAIRV 308
>gi|326527719|dbj|BAK08134.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L++MF G V++ + + ETG SRG G++TM S
Sbjct: 192 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 251
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 252 DLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|226533870|gb|ACO71288.1| cp31BHv [Triticum aestivum]
Length = 170
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 3 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 62
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 63 TFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 113
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A V++DR+ +R FGF++ +S + D+A+S L+G
Sbjct: 114 VQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKEDLDSAISALDG 160
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L+++F G V++ V + ETG SRG G++TM S
Sbjct: 90 PRQFASSFRAYVGNLPWQAEDSRLVQLFSEHGEVVNATVVYDRETGRSRGFGFVTMASKE 149
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG ++ GR +RV
Sbjct: 150 DLDSAISALDGQEMDGRPLRV 170
>gi|238010804|gb|ACR36437.1| unknown [Zea mays]
Length = 262
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 34/221 (15%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDI 113
GFR + V V +E+ + GG+E +D ++V NLP S D
Sbjct: 47 GFRPLEPVRAAATAAVTEELEAEGRSGGDEFSED------------LRVFVGNLPFSVDS 94
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +RV
Sbjct: 95 AQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRV 154
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHK-------LYVGNLSWAVKPEDLRNHFGRF 226
NS PP + SP + +YVGNLSW V L N F
Sbjct: 155 ------NSGP--------PPPRDRSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQ 200
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
G V+ AR+++DR+ +R FGF+++ S E + A+S L+G
Sbjct: 201 GEVLEARIIYDRESGRSRGFGFVTYGSAEEVENAISNLDGA 241
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 109 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 163
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 164 RSSRSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGADLDGRQIRV 250
>gi|224035665|gb|ACN36908.1| unknown [Zea mays]
Length = 251
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 4/197 (2%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V S+V E +LYV N+PR+ EL +MF GTV EV + T SR
Sbjct: 53 VSASSAVLEAPEAVAARKLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRF 112
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
G++TM + A A+ AL+G++VG R+++V + S N + P+ +FV +S +
Sbjct: 113 GFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQY 168
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+YVGNL+ V E L+N F G ++SA V H ++ +GF++FSS+ E +AA++
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 264 NGTVESHTVAFQPLFPF 280
S + F PF
Sbjct: 229 FNNAVSFSCRFYAFLPF 245
>gi|217073784|gb|ACJ85252.1| unknown [Medicago truncatula]
Length = 280
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 13 SLFTKITPPATPKRFGFTSLPTL--------INFQYPKLSSCWSRSHPAGFRSVLAV--- 61
SLFTK +P F+SLP+L +F L S SH F S +AV
Sbjct: 12 SLFTKNSPQC------FSSLPSLSLNPNFKPFSFSSVSLRPSLSISH--RFISRVAVSSE 63
Query: 62 VDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFK 121
D+E +D DD+ P R L+V +LP S D ++L E+F+
Sbjct: 64 FDQEEDTFDD-------------GDDTPSYSPNQR-----LFVGSLPFSVDSAQLAEIFE 105
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181
G V VEV + TG SRG G++TM S + A L+G V GRE+RV
Sbjct: 106 NAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPP 165
Query: 182 RTRNAEALISP---------PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
R+ N+ +P P + + ++++VGNL+W V L + FG G V+ A
Sbjct: 166 RSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEA 225
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+V++DR+ +R FGF++FSS E D+A+ +L+G
Sbjct: 226 KVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGA 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L +F G VL +V + E+G SRG G++T S + +AI L
Sbjct: 198 VHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTL 257
Query: 162 DGSDVGGREMRV 173
DG+D+ GR +RV
Sbjct: 258 DGADLNGRAIRV 269
>gi|357160118|ref|XP_003578663.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 296
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 88/167 (52%), Gaps = 9/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 117 AKVYVGNLPYDIDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 176
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DVGGR + V + +R + P + F S ++YVGNL W V L
Sbjct: 177 MFHRYDVGGRLLTVNKAAPRGAR-------VERPARDFGGSS-FRIYVGNLPWQVDDSRL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR+ +R FGF++ +S E D A+ +L+G
Sbjct: 229 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAALDG 275
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D S L+++F G V+ V + ETG SRG G++TM S +AI AL
Sbjct: 214 IYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMASQEELDDAIAAL 273
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 274 DGQSLEGRALRV 285
>gi|357148860|ref|XP_003574918.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 108 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNRESGQSRGFGFVTMSTIEEADKAIE 167
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ D+ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 168 MFNRYDISGRLLNVNRAAQRGSRVER------PPRQ---FASAFRAYVGNLPWQAEDSRL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G V++A V++DR+ +R FGF++ +S E D A+S L+G
Sbjct: 219 VQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKEELDDAISALDG 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L+++F G VL+ V + ETG SRG G++TM S
Sbjct: 195 PRQFASAFRAYVGNLPWQAEDSRLVQLFSEHGEVLNATVVYDRETGRSRGFGFVTMASKE 254
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 255 ELDDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A, chloroplastic; AltName:
Full=CP29A; Flags: Precursor
gi|19754|emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
Length = 273
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G
Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS----RTRNAEALISPPKKIFVYE 200
++TM S + A +G ++ GR +RV NS R + + ++
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRV------NSGPPPEKRENSSFRGGSRGGGSFD 185
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A
Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245
Query: 261 L-SLNG 265
+ SL+G
Sbjct: 246 IESLDG 251
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ +V + ++G SRG G++T S NAI +L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 250 DGVDLNGRAIRV 261
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein precursor [Solanum tuberosum]
Length = 289
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 108/214 (50%), Gaps = 30/214 (14%)
Query: 68 VVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVL 127
+ E E D G D+ +S EE R+ +++V NLP S D + L E+F+ G V
Sbjct: 68 IEEVEAGDDDEEEGGLSDEGASYEE-RNANPDLKIFVGNLPFSVDSAALAELFERAGDVE 126
Query: 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
VEV + TG SRG G++TM S + + A +G ++ GR +RV
Sbjct: 127 MVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVN------------- 173
Query: 188 ALISPPKKIFVY---------------ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
+ +PPK+ + +S +++YVGNL+W+V + L F G VV A
Sbjct: 174 SGPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDA 233
Query: 233 RVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
+V++DR +R FGF+++SS E DA SL+G
Sbjct: 234 KVVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDG 267
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S D +L +F G V+ +V + ++G SRG G++T S +AI +L
Sbjct: 206 VYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIESL 265
Query: 162 DGSDVGGREMRV 173
DG D+GGR +RV
Sbjct: 266 DGVDLGGRAIRV 277
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
gi|222868100|gb|EEF05231.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 102/186 (54%), Gaps = 6/186 (3%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E D S +E +S ++ +L+V NLP + D + L +F+ G V VEV + TG S
Sbjct: 72 GQEEDFLSDGDE-QSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVIYDKVTGRS 130
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I + A +G ++ GR +RV F + + P+ ++
Sbjct: 131 RGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNF----GPPPQKESSFSRGPRGGETFD 186
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +++YVGNLSW V L F G V+ A+V++DR +R FGF+++SS E D A
Sbjct: 187 SGNRVYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNA 246
Query: 261 L-SLNG 265
+ SLNG
Sbjct: 247 IDSLNG 252
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + D L +F+ G V+ +V + ++G SRG G++T S NAI +L
Sbjct: 191 VYVGNLSWNVDNLALETLFREKGRVMDAKVVYDRDSGRSRGFGFVTYSSAEEVDNAIDSL 250
Query: 162 DGSDVGGREMRV 173
+G+++ GR +RV
Sbjct: 251 NGAELDGRAIRV 262
>gi|3550483|emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 88/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F G V EV N E+G SRG G++TM +I A AI
Sbjct: 105 AKVYVGNLPYDVDSERLAQLFDQAGVVEVAEVIYNKESGQSRGFGFVTMSTIEEADKAIE 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ ++ GR + V + SR PP++ + S + YVGNL W + L
Sbjct: 165 TFNRYNISGRLLNVNRAAQRGSRVER------PPRQ---FASSFRAYVGNLPWQAEDSRL 215
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F G VV+A +++DR+ +R FGF++ +S + D+A+S L+G
Sbjct: 216 VQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKEDLDSAISALDG 262
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP + S L++MF G V++ + + ETG SRG G++TM S
Sbjct: 192 PRQFASSFRAYVGNLPWQAEDSRLVQMFSEHGEVVNATIVYDRETGRSRGFGFVTMASKE 251
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 252 DLDSAISALDGQEMDGRPLRVNVAAERPQR 281
>gi|116788830|gb|ABK25016.1| unknown [Picea sitchensis]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 10/168 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP + D +L E+F+ G VL V + + ETG SRG G++TMG++ A+ +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ + GR + V + ++ + P + S +K+YVGNL W L
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTK-------VERPSQ--AGSSTNKIYVGNLPWQADDNSL 223
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
F G V+ ARV++DR+ +R FGF+++SS++E DA +L+GT
Sbjct: 224 LQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT 271
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 88 SSVEEP-RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ VE P ++ + ++YV NLP D + LL++F G VL V + ETG SRG G++
Sbjct: 194 TKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFV 253
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
T S + +AI ALDG+D+ GR +RV + D
Sbjct: 254 TYSSESEVNDAIAALDGTDMDGRPLRVNIAED 285
>gi|414866997|tpg|DAA45554.1| TPA: ribonucleoprotein A [Zea mays]
Length = 262
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDI 113
GFR + V V +E+ + GG+E DD ++V NLP S D
Sbjct: 47 GFRPLEPVRAAATAAVTEELEAEGRSGGDEFSDD------------LRVFVGNLPFSVDS 94
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +RV
Sbjct: 95 AQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRV 154
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKPEDLRNHFGRFGTV 229
N+ + + P +++YVGNLSW V L N F G V
Sbjct: 155 -----------NSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEV 203
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ AR+++DR+ +R FGF+++ S E + A+S
Sbjct: 204 LEARIIYDRESGRSRGFGFVTYGSAEEVENAIS 236
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 109 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 163
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 164 RSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGADLDGRQIRV 250
>gi|116787606|gb|ABK24573.1| unknown [Picea sitchensis]
Length = 290
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 93/168 (55%), Gaps = 10/168 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP + D +L E+F+ G VL V + + ETG SRG G++TMG++ A+ +
Sbjct: 113 TKLFVGNLPFNLDNQQLGELFEGAGEVLDVNIITDRETGNSRGFGFVTMGTVEEAEKGVE 172
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ + GR + V + ++ + P + S +K+YVGNL W L
Sbjct: 173 LFNRHSLEGRLLTVNKAAPRGTK-------VERPSQ--AGSSTNKIYVGNLPWQADDNSL 223
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
F G V+ ARV++DR+ +R FGF+++SS++E DA +L+GT
Sbjct: 224 LQLFSEHGKVLEARVVYDRETGRSRGFGFVTYSSESEVNDAIAALDGT 271
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 88 SSVEEP-RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ VE P ++ + ++YV NLP D + LL++F G VL V + ETG SRG G++
Sbjct: 194 TKVERPSQAGSSTNKIYVGNLPWQADDNSLLQLFSEHGKVLEARVVYDRETGRSRGFGFV 253
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
T S + +AI ALDG+D+ GR +RV + D
Sbjct: 254 TYSSESEVNDAIAALDGTDMDGRPLRVNIAED 285
>gi|226492142|ref|NP_001148607.1| ribonucleoprotein A precursor [Zea mays]
gi|195620768|gb|ACG32214.1| ribonucleoprotein A [Zea mays]
Length = 264
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDI 113
GFR + V V +E+ + GG+E DD ++V NLP S D
Sbjct: 49 GFRPLEPVRAAATAAVTEELEAEGRSGGDEFSDD------------LRVFVGNLPFSVDS 96
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +RV
Sbjct: 97 AQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEVAVDQFNGYVLDGRSLRV 156
Query: 174 RFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKPEDLRNHFGRFGTV 229
N+ + + P +++YVGNLSW V L N F G V
Sbjct: 157 -----------NSGPPPPRDRSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEV 205
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ AR+++DR+ +R FGF+++ S E + A+S
Sbjct: 206 LEARIIYDRESGRSRGFGFVTYGSAEEVENAIS 238
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 13/147 (8%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V EE V D+ NG + N G D
Sbjct: 111 MVEVIYDKLTG---RSRGFGFVTMSSV--EEVEVAVDQFNGYVLDGRSLRVNSGPPPPRD 165
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS R R +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 166 RSSPSPQRPRGDANRVYVGNLSWGVDNSALANLFSEQGEVLEARIIYDRESGRSRGFGFV 225
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDG+D+ GR++RV
Sbjct: 226 TYGSAEEVENAISNLDGADLDGRQIRV 252
>gi|242079661|ref|XP_002444599.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
gi|241940949|gb|EES14094.1| hypothetical protein SORBIDRAFT_07g024400 [Sorghum bicolor]
Length = 292
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP D L ++F G V EV N ETG S
Sbjct: 98 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIDSEGLAQLFDQAGVVEVAEVIYNRETGQS 154
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 155 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 205
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W V L F G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 206 PAFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKEELDDA 265
Query: 261 LS-LNG 265
+S L+G
Sbjct: 266 ISALDG 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F G V++ V + E+G SRG G++TM S
Sbjct: 201 PRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVNATVVYDRESGRSRGFGFVTMVSKE 260
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 261 ELDDAISALDGQELDGRPLRVNVAAERPQR 290
>gi|115478330|ref|NP_001062760.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|49387841|dbj|BAD26506.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|49388840|dbj|BAD26030.1| putative plastid-specific ribosomal protein 2 precursor [Oryza
sativa Japonica Group]
gi|113630993|dbj|BAF24674.1| Os09g0279500 [Oryza sativa Japonica Group]
gi|215695254|dbj|BAG90445.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737768|dbj|BAG96898.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641205|gb|EEE69337.1| hypothetical protein OsJ_28655 [Oryza sativa Japonica Group]
Length = 245
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 94/162 (58%), Gaps = 4/162 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTV EV + TG SR G++TM + A AI +
Sbjct: 71 KLYVGNIPRTVTNDELAAMFADHGTVERAEVMFDKYTGRSRRFGFVTMSTPEEANAAIES 130
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N + P+ +FV +S +K+YVGNL+ +V E L+
Sbjct: 131 LNETEVGGRKIKVNVT---ESFLPNIDRSAPEPEPVFV-DSQYKVYVGNLAKSVTTEMLK 186
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
N F G V+SA V ++ +GF++FSS+ E AA+S
Sbjct: 187 NFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVS 228
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL +S L F G VLS VSR P T S+G G++T S + A+
Sbjct: 170 KVYVGNLAKSVTTEMLKNFFSEKGEVLSATVSRIPGTAKSKGYGFVTFSSEEEVQAAVST 229
Query: 161 LDGSDVGGREMRV 173
+ +++ G+ +RV
Sbjct: 230 FNNAELEGQPIRV 242
>gi|242035621|ref|XP_002465205.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
gi|241919059|gb|EER92203.1| hypothetical protein SORBIDRAFT_01g034120 [Sorghum bicolor]
Length = 262
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 29/219 (13%)
Query: 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFD 112
AGFR + V V +E+ + GG E + ++V NLP S D
Sbjct: 47 AGFRPLEPVRAAATAAVTEELEAEGQPGGEE-----------EFSEDLRVFVGNLPFSVD 95
Query: 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172
++L +F+ G+V VEV + TG SRG G++TM S+ + A+ +G + GR +R
Sbjct: 96 SAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVQEVEAAVEQFNGYVLDGRSLR 155
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKPEDLRNHFGRFGT 228
V NS PP+ P +++YVGNLSW V L N F G
Sbjct: 156 V------NSGP-------PPPRDPSSQRGPRGDANRVYVGNLSWGVDNSALANLFSEQGE 202
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
V+ AR+++DR+ +R FGF+++ S E + A+S L+G+
Sbjct: 203 VLEARIVYDRESGRSRGFGFVTYGSAEEVENAISNLDGS 241
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 74/147 (50%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G D
Sbjct: 111 MVEVIYDKLTG---RSRGFGFVTMSSVQEVEAAV--EQFNGYVLDGRSLRVNSGPPPPRD 165
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D S L +F G VL + + E+G SRG G++
Sbjct: 166 PSSQRGPRGDAN--RVYVGNLSWGVDNSALANLFSEQGEVLEARIVYDRESGRSRGFGFV 223
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NAI LDGSD+ GR++RV
Sbjct: 224 TYGSAEEVENAISNLDGSDLDGRQIRV 250
>gi|225450219|ref|XP_002265629.1| PREDICTED: 30S ribosomal protein 2, chloroplastic [Vitis vinifera]
gi|297736206|emb|CBI24844.3| unnamed protein product [Vitis vinifera]
Length = 247
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 95/168 (56%), Gaps = 16/168 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ D +EL + + G V EV + +G SR ++TM ++ A AI L
Sbjct: 72 LYVGNIPRTLDSAELARIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEKL 131
Query: 162 DGSDVGGREMRVR------FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V ++DM +L+ + F+ +SPHK+YVGNL+ V
Sbjct: 132 NGTEIGGREIKVNITEKPLLTLDM--------SLLQAEESQFI-DSPHKVYVGNLARTVT 182
Query: 216 PEDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L F + G V+SA+V + FGF+SFSS+ + +AA+S
Sbjct: 183 TDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDVEAAIS 230
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSS-------------VEEPRS 95
RS F ++ V D A + +++NG + +GG E+ + + EE +
Sbjct: 109 RSRRFAFVTMKTVEDANAAI--EKLNGTE-IGGREIKVNITEKPLLTLDMSLLQAEESQF 165
Query: 96 RARPCELYVCNLPRSFDISELLEMF-KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
P ++YV NL R+ L + F + G VLS +VSR P T S G G+++ S
Sbjct: 166 IDSPHKVYVGNLARTVTTDTLTQFFSEKGGKVLSAKVSRVPGTSKSSGFGFVSFSSEEDV 225
Query: 155 KNAIIALDGSDVGGREMRV 173
+ AI + + + + G+ +RV
Sbjct: 226 EAAISSCNNAFLDGQRIRV 244
>gi|326510421|dbj|BAJ87427.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510771|dbj|BAJ91733.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 9/172 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP + D ++L +F+ G+V VEV + TG SRG G++TMGS+ A+
Sbjct: 87 LKVFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMGSVEEVAAAVE 146
Query: 160 ALDGSDVGGREMRVRFS-----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+G GR +RV + RT A + ++S +KLYVGNLSW V
Sbjct: 147 QFNGYTFQGRPLRVNSGPPPPRDEFAPRTPRA---MGGGGGGGSFDSANKLYVGNLSWGV 203
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L N F G V+ A+V++DR +R FGF+++ S E + A+S L+G
Sbjct: 204 DNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISNLDG 255
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL D S L +F G VL +V + ++G SRG G++T GS + NAI
Sbjct: 193 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 252
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 253 LDGVDLDGRQIRV 265
>gi|212274649|ref|NP_001130287.1| uncharacterized protein LOC100191381 [Zea mays]
gi|194688754|gb|ACF78461.1| unknown [Zea mays]
gi|414870130|tpg|DAA48687.1| TPA: ribonucleoprotein [Zea mays]
Length = 289
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP + L ++F G V EV N ETG S
Sbjct: 95 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQS 151
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 152 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 202
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W L F +G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 203 PAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDA 262
Query: 261 LS-LNG 265
+S L+G
Sbjct: 263 ISALDG 268
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F +G V++ V + ETG SRG G++TM S
Sbjct: 198 PRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKE 257
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 258 ELDDAISALDGQELDGRPLRVNVAAERPQR 287
>gi|242048440|ref|XP_002461966.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
gi|241925343|gb|EER98487.1| hypothetical protein SORBIDRAFT_02g011330 [Sorghum bicolor]
Length = 294
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM ++ A A+
Sbjct: 116 AKVYVGNLPYDVDSERLAQLFEQAGVVEVAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 175
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPED 218
L DV GR + V + SR PP++ P ++YVGNL W V
Sbjct: 176 MLHRYDVNGRLLTVNKAAPRGSRVDR------PPRQ----SGPSLRIYVGNLPWQVDDSK 225
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L F G VV ARV++DR+ +R FGF++ ++ E D A+ +L+G
Sbjct: 226 LVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQDELDDAIAALDG 273
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S+L++MF G V+ V + ETG SRG G++TM + +
Sbjct: 203 PRQSGPSLRIYVGNLPWQVDDSKLVQMFSEHGKVVDARVVYDRETGRSRGFGFVTMATQD 262
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 263 ELDDAIAALDGQSLDGRALRV 283
>gi|195624584|gb|ACG34122.1| ribonucleoprotein [Zea mays]
Length = 289
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 13/186 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G+E + + + EP A+ +YV NLP + L ++F G V EV N ETG S
Sbjct: 95 GDEGEGEYAAVEPPEEAK---VYVGNLPYDIESEGLAQLFDQAGVVEVAEVIYNKETGQS 151
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM +I A AI + D+ GR + V + +R PP++ +
Sbjct: 152 RGFGFVTMSTIEEADKAIEMFNRYDISGRLLNVNRASPRGTRMER------PPRQ---FA 202
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W L F +G VV+A V++DR+ +R FGF++ S E D A
Sbjct: 203 PAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKEELDDA 262
Query: 261 LS-LNG 265
+S L+G
Sbjct: 263 ISALDG 268
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR A YV NLP D S L+++F +G V++ V + ETG SRG G++TM S
Sbjct: 198 PRQFAPAFRAYVGNLPWQADDSRLVQLFSEYGEVVNAAVVYDRETGRSRGFGFVTMVSKE 257
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI ALDG ++ GR +RV + + R
Sbjct: 258 ELDDAISALDGQELDGRPLRVNVAAERPQR 287
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRAR---PCE---LYVCNLPRSFDISELLEMFKPF 123
E+ + +D G+E + D S RA P E L+V NL + L +F+
Sbjct: 99 ENSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 158
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR
Sbjct: 159 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR- 217
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
P + VYE ++YVGNL W V L F G VV ARV++DR+ +
Sbjct: 218 --------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 269
Query: 244 RVFGFISFSSDAERDAALS-LNG 265
R FGF++ S E + A+S L+G
Sbjct: 270 RGFGFVTMSDVDELNEAISALDG 292
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 222 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 281
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 282 ELNEAISALDGQNLEGRAIRV 302
>gi|356533254|ref|XP_003535181.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 275
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 6/170 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + D ++L E+F+ G V VEV + TG SRG G++TM S+ A+ A
Sbjct: 87 KLFVGNLPFNVDSAQLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEAAAQQ 146
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVKP 216
+G ++ GR +RV S +R +A P ++++V NL+W V
Sbjct: 147 FNGYELDGRALRVN-SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVSNLAWGVDN 205
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L++ F G V+ ARV++DR+ +R FGF++FSS E ++A+ SLNG
Sbjct: 206 VALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSLNG 255
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L +F+ G VL V + E+G SRG G++T S + +AI +L
Sbjct: 194 VHVSNLAWGVDNVALKSLFREQGNVLEARVIYDRESGRSRGFGFVTFSSPDEVNSAIQSL 253
Query: 162 DGSDVGGREMRVRFS 176
+G D+ GR +RV +
Sbjct: 254 NGVDLNGRAIRVSLA 268
>gi|195611722|gb|ACG27691.1| ribonucleoprotein [Zea mays]
Length = 341
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 31/189 (16%)
Query: 93 PRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 101 PRSRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTM 160
Query: 149 GSINSAKNAIIALDGSDVGGREMRV----------RFSIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV R ++ M+ R R+
Sbjct: 161 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD------------- 207
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SFS+ +
Sbjct: 208 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDA 265
Query: 258 DAAL-SLNG 265
AAL SL+G
Sbjct: 266 QAALESLDG 274
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 161 LDGSDVGGREMRV 173
LDG ++ GR +R+
Sbjct: 272 LDGVELEGRPLRL 284
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 19/181 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP + + ++L ++FK G V VEV + TG SRG G++TM +I + A
Sbjct: 91 LQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQ 150
Query: 160 ALDGSDVGGREMRV-------------RFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G ++ GR +RV R NS +R A + ++S +++Y
Sbjct: 151 QFNGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGA-----RGGETFDSSNRVY 205
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
VGNLSW V L + F G V+ A+V++DR ++ FGF+++SS E DA SLNG
Sbjct: 206 VGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSLNG 265
Query: 266 T 266
Sbjct: 266 A 266
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + D S L +F+ G V+ +V + ++G S+G G++T S ++A+ +L
Sbjct: 204 VYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEVEDAVDSL 263
Query: 162 DGSDVGGREMRV 173
+G+++ GR +RV
Sbjct: 264 NGAELDGRAIRV 275
>gi|219885617|gb|ACL53183.1| unknown [Zea mays]
Length = 275
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 13/196 (6%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G E + + EP A+ +YV NLP D L ++F G V EV N ETG S
Sbjct: 92 GGEGEGQYAAVEPPEEAK---VYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQS 148
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
RG G++TM ++ A AI D+ GR + V + +R + +P
Sbjct: 149 RGFGFVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAP-------- 200
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E + A
Sbjct: 201 -AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELNDA 259
Query: 261 LS-LNGTVESHTVAFQ 275
+S L+G V F+
Sbjct: 260 ISALDGQVNWTAALFE 275
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223541388|gb|EEF42939.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 280
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 106/198 (53%), Gaps = 30/198 (15%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
+D SS + S ++ +L+V NLP + D ++L +F+ G V VEV + TG SRG G
Sbjct: 77 EDVSSDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFG 136
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESP- 202
++TM SI+ + A +G ++ GR +RV NS PP++ + SP
Sbjct: 137 FVTMSSIDEVEAAAQQFNGYELEGRALRV------NSGP--------PPQRESSFSRSPR 182
Query: 203 -------------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
++LYVGNLSW+V L + F G VV A+V++DR+ +R FGF+
Sbjct: 183 FGGGGGGGESLEGNRLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFV 242
Query: 250 SFSSDAERDAAL-SLNGT 266
++SS E + A+ SLNG
Sbjct: 243 TYSSAEEVENAIDSLNGA 260
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L F G V+ +V + E+G SRG G++T S +NAI +L
Sbjct: 198 LYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSL 257
Query: 162 DGSDVGGREMRV 173
+G+++ GR +RV
Sbjct: 258 NGAELDGRAIRV 269
>gi|226497258|ref|NP_001140274.1| uncharacterized protein LOC100272318 [Zea mays]
gi|194698792|gb|ACF83480.1| unknown [Zea mays]
gi|414883568|tpg|DAA59582.1| TPA: ribonucleoprotein [Zea mays]
Length = 341
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 98/189 (51%), Gaps = 31/189 (16%)
Query: 93 PRSRA----RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 101 PRSRPPRGDDPGRLFVGNLPYTYTSEELAQVFSEAGRVDDAQIIYDKVTNRSRGFAFVTM 160
Query: 149 GSINSAKNAIIALDGSDVGGREMRV----------RFSIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV R ++ M+ R R+
Sbjct: 161 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD------------- 207
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SFS+ +
Sbjct: 208 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFSTAEDA 265
Query: 258 DAAL-SLNG 265
AAL SL+G
Sbjct: 266 QAALESLDG 274
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 212 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 271
Query: 161 LDGSDVGGREMRV 173
LDG ++ GR +R+
Sbjct: 272 LDGVELEGRSLRL 284
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 16/203 (7%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRAR---PCE---LYVCNLPRSFDISELLEMFKPF 123
E+ + +D G+E + D S RA P E L+V NL + L +F+
Sbjct: 89 ENSLESQDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQA 148
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V + SR
Sbjct: 149 GTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSR- 207
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
P + VYE ++YVGNL W V L F G VV ARV++DR+ +
Sbjct: 208 --------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 259
Query: 244 RVFGFISFSSDAERDAALS-LNG 265
R FGF++ S E + A+S L+G
Sbjct: 260 RGFGFVTMSDVDELNEAISALDG 282
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 212 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 271
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 272 ELNEAISALDGQNLEGRAIRV 292
>gi|19032262|emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
Length = 315
Score = 93.6 bits (231), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 12/179 (6%)
Query: 91 EEPRSRARPCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
EE A P E ++V NLP + ++L ++F G V S EV N ET SRG G+++M
Sbjct: 125 EEDSYSAPPEEVKIFVGNLPFDLESADLADLFNKAGVVESAEVIYNRETDQSRGFGFVSM 184
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ AI D D+ GR + V + SR PP+ +E ++YVG
Sbjct: 185 STVEEVVKAIEMFDRYDINGRTLTVNKAAPRGSRAER------PPRD---FEPAFRVYVG 235
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
N+ W V L F +G V AR++ DR+ +R FGF++ SS E DA +L+G+
Sbjct: 236 NIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGS 294
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV N+P D L ++F +G V + + ETG SRG G++TM S
Sbjct: 223 PRDFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEARIVFDRETGRSRGFGFVTMSSQI 282
Query: 153 SAKNAIIALDGSDVGGREMRV 173
++AI ALDGSD+ GR ++V
Sbjct: 283 EMEDAIAALDGSDLDGRAIKV 303
>gi|449436259|ref|XP_004135910.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
gi|449489082|ref|XP_004158209.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Cucumis
sativus]
Length = 251
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 94/169 (55%), Gaps = 16/169 (9%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ N+PR+ + EL + + G V EV + +G SR ++TM ++ A AI
Sbjct: 75 KLYIGNIPRNVNNEELTRIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAAIEK 134
Query: 161 LDGSDVGGREMRVRFS-------IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
L+ ++VGGR+++V + +DM + + + F+ +SP+K+YVGN+S
Sbjct: 135 LNETEVGGRKIKVNITEKPVVNTVDM--------SFLQAEESQFI-DSPYKVYVGNISST 185
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V E L+N F G V+SA+V + +GF++FSS+ E DAA+S
Sbjct: 186 VSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAIS 234
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV N+ + L F G VLS +VSR P T S G G++T S AI
Sbjct: 174 PYKVYVGNISSTVSTETLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEEVDAAI 233
Query: 159 IALDGSDVGGREMRV 173
+ + + + G+ +RV
Sbjct: 234 SSFNNALLEGQPIRV 248
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL MF GTV+ EV + +G SR G++TM + AI +
Sbjct: 70 KLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRRFGFVTMSTAEEVAAAIES 129
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ ++VGGR+++V + S N +A + FV +S +K+YVGNL+ V E L+
Sbjct: 130 LNDTEVGGRKIKVNVT---ESFLPNIDASAPESEPSFV-DSQYKVYVGNLAKKVTTEVLK 185
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL--NGTVESHTV 272
N F G V+SA V ++ +GF++FSS+ E +AA+S N +E T+
Sbjct: 186 NFFSEKGEVLSATVSRIPGTPKSKGYGFVTFSSEEEVEAAVSTFNNTELEGQTI 239
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
+D + EP ++YV NL + L F G VLS VSR P T S+G
Sbjct: 152 IDASAPESEPSFVDSQYKVYVGNLAKKVTTEVLKNFFSEKGEVLSATVSRIPGTPKSKGY 211
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G++T S + A+ + +++ G+ +RV
Sbjct: 212 GFVTFSSEEEVEAAVSTFNNTELEGQTIRV 241
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 101/186 (54%), Gaps = 16/186 (8%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+V +V+ + + LYV N+PR+ EL ++F G V EV + T SR
Sbjct: 56 QVQVQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVMYDKYTKRSRR 115
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS---ID---MNSRTRNAEALISPPKKI 196
++TM ++ A+ AI ++G+++GGR ++V + +D +N T AE +
Sbjct: 116 FAFVTMSTVEDAQAAIEKMNGTEIGGRVIKVNITEKPLDVSGLNRLTEEAEFI------- 168
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
+SP+K+YVGNL+ AV E L+ F G V+ A+V + + +GF+SFSS+A+
Sbjct: 169 ---DSPYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEAD 225
Query: 257 RDAALS 262
+AA+S
Sbjct: 226 VEAAIS 231
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++YV NL ++ L + F G VL +V+R PETG S G G+++ S + AI
Sbjct: 171 PYKVYVGNLAKAVTTETLKKKFAEKGNVLDAKVTRIPETGKSGGYGFVSFSSEADVEAAI 230
Query: 159 IALDGSDVGGREMRV 173
A + + G+ MRV
Sbjct: 231 SAFNNVVLEGKPMRV 245
>gi|162463757|ref|NP_001105347.1| nucleic acid binding protein1 [Zea mays]
gi|168526|gb|AAA33486.1| nucleic acid-binding protein [Zea mays]
gi|195637380|gb|ACG38158.1| ribonucleoprotein [Zea mays]
gi|219884029|gb|ACL52389.1| unknown [Zea mays]
gi|414884557|tpg|DAA60571.1| TPA: nucleic acid binding protein1 [Zea mays]
Length = 303
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 77 DNVGGNEVDDDSSVEEPRSRA--------------RPCELYVCNLPRSFDISELLEMFKP 122
D+ G E+ DD SVE + ++YV NLP D L ++F
Sbjct: 88 DDEGAGELVDDHSVEVSAAVEDEVEEEVGEYVEPPEEAKVYVGNLPYDVDSERLAQLFDQ 147
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G V EV N ET SRG G++TM ++ A+ A+ DV GR + V + SR
Sbjct: 148 AGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFHRYDVNGRLLTVNKAAPRGSR 207
Query: 183 TRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
PP++ P ++YVGNL W V L F G VV ARV++DR+
Sbjct: 208 VDR------PPRQ----SGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETG 257
Query: 242 TTRVFGFISFSSDAERDAAL-SLNG 265
+R FGF++ +S E D A+ +L+G
Sbjct: 258 RSRGFGFVTMASQDELDDAIAALDG 282
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 46/81 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ V + ETG SRG G++TM S +
Sbjct: 212 PRQSGPSLRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRETGRSRGFGFVTMASQD 271
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 272 ELDDAIAALDGQSLDGRALRV 292
>gi|326493824|dbj|BAJ85374.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 116 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 175
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 176 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR +R FGF++ +S E D A+ +L+G
Sbjct: 227 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 273
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ V + +TG SRG G++TM S
Sbjct: 203 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 262
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 263 ELDDAIAALDGQSLEGRALRV 283
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+ PP++ K+YVGNL + V E L F + G V + V+++R+ +R FGF+
Sbjct: 110 VEPPEEA-------KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFV 162
Query: 250 SFSSDAERDAALSL 263
+ S+ E + A+ +
Sbjct: 163 TMSTIEEAEKAVEM 176
>gi|255544262|ref|XP_002513193.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223547691|gb|EEF49184.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 256
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/161 (34%), Positives = 90/161 (55%), Gaps = 3/161 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ N+PR+ D EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 82 LYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIEKL 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ +GGRE++V +I + + + FV +SPHK+YVGNL+ V E L+N
Sbjct: 142 NGTQIGGREIKV--NITEKPLASGDLSFLQLEESQFV-DSPHKVYVGNLAKTVTSEILKN 198
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F G V+SA+V + +GF+SFS + + +AA+S
Sbjct: 199 FFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAIS 239
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 16/138 (11%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSS-------------VEEPRS 95
RS F ++ V D AV+ +++NG +GG E+ + + +EE +
Sbjct: 119 RSRRFAFVTMRTVEDANAVI--EKLNG-TQIGGREIKVNITEKPLASGDLSFLQLEESQF 175
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
P ++YV NL ++ L F G VLS +VSR P T S G G+++ +
Sbjct: 176 VDSPHKVYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVE 235
Query: 156 NAIIALDGSDVGGREMRV 173
AI + + S + G+++RV
Sbjct: 236 AAISSFNNSLLEGQKIRV 253
>gi|224106031|ref|XP_002314019.1| predicted protein [Populus trichocarpa]
gi|222850427|gb|EEE87974.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM + A AI L
Sbjct: 81 LYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEKL 140
Query: 162 DGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V S+D+ S + + +SP+K+YVGNL+ V
Sbjct: 141 NGTEIGGREIKVNITEKPLQSLDLPSLQSDESQFV---------DSPYKVYVGNLAKTVA 191
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+N F + G V+SA+V + FGF++FSS+ + + A+S
Sbjct: 192 TDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAIS 238
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 14/123 (11%)
Query: 64 EEAVVVEDEINGKDNVGGNEVD-----------DDSSVEEPRSR--ARPCELYVCNLPRS 110
E+A +++NG + +GG E+ D S++ S+ P ++YV NL ++
Sbjct: 131 EDANAAIEKLNGTE-IGGREIKVNITEKPLQSLDLPSLQSDESQFVDSPYKVYVGNLAKT 189
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L F G VLS +VSR P T S G G++T S + AI + + S + G+
Sbjct: 190 VATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQP 249
Query: 171 MRV 173
+RV
Sbjct: 250 IRV 252
>gi|222629794|gb|EEE61926.1| hypothetical protein OsJ_16667 [Oryza sativa Japonica Group]
Length = 1011
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 14/201 (6%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 371 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 429
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRNAEA 188
+S+G G++ S + A A+I L+G V GR++ VR S ++ S TRN+ A
Sbjct: 430 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNS-A 488
Query: 189 LISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
+ SP V E LYV N+ ++ + L F FG + ARV+ D + + +G
Sbjct: 489 VESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYG 548
Query: 248 FISFS-SDAERDAALSLNGTV 267
FI F+ S++ A ++NG +
Sbjct: 549 FIKFTDSESATKAIAAMNGAL 569
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 298 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 357
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 358 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 405
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + F FG V +A+V D ++ +GF+ +SS +A + LNG
Sbjct: 406 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 454
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 486 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 545
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 546 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 593
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 594 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 626
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P S + +++F+PFG V+ + R G+ R + + A AI L
Sbjct: 691 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVR------FDNPSCAAAAIDHL 744
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
DG +GG + VR + + N+ + +S ++ + + LYV +L V E
Sbjct: 745 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMT--NLYVSHLPSYVNNER 802
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + F G + A+V+ +R ++ FGF+ F+ AL+ +NG
Sbjct: 803 LIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 850
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 602 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 653
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 654 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 707
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG VV AR+ ++ +G + F + + AA+
Sbjct: 708 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAI 741
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 789 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 848
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 849 NGYPLDGHVLEVRIA 863
>gi|118489133|gb|ABK96373.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 255
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 91/167 (54%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM + A AI L
Sbjct: 81 LYVGNIPRTLTNEELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTAEDANAAIEKL 140
Query: 162 DGSDVGGREMRVRF------SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V S+D+ S + + +SP+K+YVGNL+ V
Sbjct: 141 NGTEIGGREIKVNITEKPLQSLDLPSLQSDETQFV---------DSPYKVYVGNLAKTVA 191
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+N F + G V+SA+V + FGF++FSS+ + + A+S
Sbjct: 192 TDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAIS 238
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 14/123 (11%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDD------SSVEEPRSRA-------RPCELYVCNLPRS 110
E+A +++NG + +GG E+ + S++ P ++ P ++YV NL ++
Sbjct: 131 EDANAAIEKLNGTE-IGGREIKVNITEKPLQSLDLPSLQSDETQFVDSPYKVYVGNLAKT 189
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L F G VLS +VSR P T S G G++T S + AI + + S + G+
Sbjct: 190 VATDTLKNFFSKKGNVLSAKVSRVPGTSKSSGFGFVTFSSEEDVEVAISSFNNSLLEGQP 249
Query: 171 MRV 173
+RV
Sbjct: 250 IRV 252
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis thaliana]
gi|23505889|gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
Length = 329
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 297 ELNEAISALDGQNLEGRAIRV 317
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
gi|464662|sp|Q04836.1|ROC3_ARATH RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=RNA-binding protein 1/2/3; Short=AtRBP33; AltName:
Full=RNA-binding protein RNP-T; AltName:
Full=RNA-binding protein cp31; Flags: Precursor
gi|16490|emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
gi|387569|gb|AAA32860.1| 31 kDa RNA binding protein [Arabidopsis thaliana]
gi|475718|gb|AAA18378.1| RNA-binding protein 1 [Arabidopsis thaliana]
gi|4220513|emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|7269328|emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
gi|332659554|gb|AEE84954.1| ribonucleoprotein [Arabidopsis thaliana]
gi|737169|prf||1921382A RNA-binding protein
Length = 329
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 297 ELNEAISALDGQNLEGRAIRV 317
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 14/190 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D+ +EP A+ L+V NLP D +L ++F+ G V EV N ET SRG G
Sbjct: 99 DEGEGFQEPPEDAK---LFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFG 155
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++TM ++ A+ A+ +V GR + V + SR A P++ YE +
Sbjct: 156 FVTMSTVEEAEKAVELYHKFEVNGRFLTVNKAAPRGSRPERA------PRE---YEPSFR 206
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YVGNL W V L F G V+SARV+ DR+ +R F F++ +S++E + A+ +L
Sbjct: 207 VYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGAL 266
Query: 264 NG-TVESHTV 272
+G T+E +
Sbjct: 267 DGQTLEGRAI 276
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 48/91 (52%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D + L ++F G VLS V + ETG SRG ++TM S +
Sbjct: 198 PREYEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASES 257
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
AI ALDG + GR +RV + + R+
Sbjct: 258 EMNEAIGALDGQTLEGRAIRVNVAEERPRRS 288
>gi|115480705|ref|NP_001063946.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|52076131|dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|52076138|dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa Japonica Group]
gi|113632179|dbj|BAF25860.1| Os09g0565200 [Oryza sativa Japonica Group]
gi|215697272|dbj|BAG91266.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737486|dbj|BAG96616.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218202645|gb|EEC85072.1| hypothetical protein OsI_32419 [Oryza sativa Indica Group]
gi|222642113|gb|EEE70245.1| hypothetical protein OsJ_30367 [Oryza sativa Japonica Group]
Length = 322
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 143 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 202
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP++ + ++YVGNL W V L
Sbjct: 203 MFHRYDVDGRLLTVNKAAPRGARVER------PPRQ---FGPSFRIYVGNLPWQVDDSRL 253
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR+ +R FGF++ ++ E D A+ +L+G
Sbjct: 254 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDG 300
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+++F G V+ V + ETG SRG G++TM +
Sbjct: 230 PRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQE 289
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 290 ELDDAIAALDGQSLDGRALRV 310
>gi|2443390|dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
Length = 293
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 115 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 174
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 175 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 225
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR +R FGF++ +S E D A+ +L+G
Sbjct: 226 VELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQPELDDAIAALDG 272
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ V + +TG SRG G++TM S
Sbjct: 202 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQP 261
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 262 ELDDAIAALDGQSLEGRALRV 282
>gi|149391365|gb|ABR25700.1| chloroplast 28 kDa ribonucleoprotein [Oryza sativa Indica Group]
Length = 186
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 7 AKVYVGNLPYDIDSERLAQLFEQAGIVEVSEVIYNRETDRSRGFGFVTMSTVEEAEKAVE 66
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP++ + ++YVGNL W V L
Sbjct: 67 MFHRYDVDGRLLTVNKAAPRGARVER------PPRQ---FGPSFRIYVGNLPWQVDDSRL 117
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV ARV++DR+ +R FGF++ ++ E D A+ +L+G
Sbjct: 118 VQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAIAALDG 164
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+++F G V+ V + ETG SRG G++TM +
Sbjct: 94 PRQFGPSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQE 153
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 154 ELDDAIAALDGQSLDGRALRV 174
>gi|115461392|ref|NP_001054296.1| Os04g0682400 [Oryza sativa Japonica Group]
gi|113565867|dbj|BAF16210.1| Os04g0682400 [Oryza sativa Japonica Group]
Length = 1008
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++
Sbjct: 365 KVRVTGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDH 423
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRN 185
TG+S+G G++ S + A A+I L+G V GR++ VR S ++ S TRN
Sbjct: 424 TTGLSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRN 483
Query: 186 AEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ A+ SP V E LYV N+ ++ + L F FG + ARV+ D + +
Sbjct: 484 S-AVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 542
Query: 245 VFGFISFS-SDAERDAALSLNGTV 267
+GFI F+ S++ A ++NG +
Sbjct: 543 GYGFIKFTDSESATKAIAAMNGAL 566
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 295 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 354
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G ++VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 355 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 402
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + F FG V +A+V D ++ +GF+ +SS +A + LNG
Sbjct: 403 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 451
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 483 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 542
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 543 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 590
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 591 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 623
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P S + +++F+PFG V+ + R G+ R + + A AI L
Sbjct: 688 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVR------FDNPSCAAAAIDHL 741
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
DG +GG + VR + + N+ + +S ++ + + LYV +L V E
Sbjct: 742 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMT--NLYVSHLPSYVNNER 799
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
L + F G + A+V+ +R ++ FGF+ F+ AL+ +NG
Sbjct: 800 LIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNG 847
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 599 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 650
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 651 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 704
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG VV AR+ ++ +G + F + + AA+
Sbjct: 705 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAI 738
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L+++F P G + +V TG+S+G G++ SA A+ +
Sbjct: 786 LYVSHLPSYVNNERLIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHM 845
Query: 162 DGSDVGGREMRVRFS 176
+G + G + VR +
Sbjct: 846 NGYPLDGHVLEVRIA 860
>gi|414884784|tpg|DAA60798.1| TPA: hypothetical protein ZEAMMB73_633133 [Zea mays]
Length = 244
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 95/162 (58%), Gaps = 4/162 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+PR+ EL +MF GTV EV + T SR G++TM + A A+ A
Sbjct: 70 KLYVGNIPRTVTNDELRDMFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEA 129
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+G++VG R+++V + S N + P+ +FV +S +K+YVGNL+ V E L+
Sbjct: 130 LNGTEVGDRKIKVNVT---ESFLPNIDRSAPEPEALFV-DSQYKVYVGNLAKTVTTEVLK 185
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
N F G ++SA V H ++ +GF++FSS+ E +AA++
Sbjct: 186 NFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVA 227
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL ++ L F G +LS VS P T S+G G++T S + A+
Sbjct: 169 KVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIPGTSKSKGYGFVTFSSEEEVEAAVAT 228
Query: 161 LDGSDVGGREMRV 173
+ +++ G+ +RV
Sbjct: 229 FNNAELEGQLIRV 241
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 131 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 187
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 188 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 238
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G
Sbjct: 239 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 293
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 223 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 282
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 283 ELNEAISALDGQNLEGRAIRV 303
>gi|449440612|ref|XP_004138078.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 330
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EEP A+ L+V NLP D +L +F+ GTV EV N ET SRG G++TM +
Sbjct: 146 EEPNEDAK---LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST 202
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ A+ A+ + D+ GR + V + SR P +I YVGNL
Sbjct: 203 VEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRI---------YVGNL 253
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
W V L F G VV ARVL+DR +R FGF++ + + DA +L+G
Sbjct: 254 PWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 309
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EPR +YV NLP D L ++F G V+ V + ++G SRG G++TM
Sbjct: 238 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 297
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 298 TGMNDAIAALDGQSLDGRAIRV 319
>gi|147859670|emb|CAN83111.1| hypothetical protein VITISV_026573 [Vitis vinifera]
Length = 355
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 82/150 (54%), Gaps = 16/150 (10%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY NLP S D + L + + +G+ VEV + +TG SRG ++TM S+ I
Sbjct: 67 KLYFGNLPYSCDSAHLAGIIQNYGSPELVEVLYDRDTGRSRGFAFVTMSSVEDCNAVIEN 126
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYVGNLSWAVKPEDL 219
LDGS+ GGR +RV FS P K+ +Y E+ +KL+VGNLSW+V E L
Sbjct: 127 LDGSEYGGRTLRVNFS-------------DKPKPKLPLYPETEYKLFVGNLSWSVTSESL 173
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
F +G V+ ARVL+D G+T V +
Sbjct: 174 NQVFQEYGNVIGARVLYD--GETGSVIWLL 201
>gi|38345560|emb|CAE03434.2| OSJNBa0032F06.17 [Oryza sativa Japonica Group]
Length = 924
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 100/189 (52%), Gaps = 13/189 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++P +LYVCNL S + L+ +F PFG V + +V+++ TG+S+G G++ S
Sbjct: 295 QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSS 354
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS----------IDMNSRTRNAEALISPPKKIFVYE 200
+ A A+I L+G V GR++ VR S ++ S TRN+ A+ SP V E
Sbjct: 355 PHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNS-AVESPSTTRTVKE 413
Query: 201 -SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERD 258
LYV N+ ++ + L F FG + ARV+ D + + +GFI F+ S++
Sbjct: 414 IDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESATK 473
Query: 259 AALSLNGTV 267
A ++NG +
Sbjct: 474 AIAAMNGAL 482
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G ++VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 271 NGRLVEGTALKVRVTGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 318
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + F FG V +A+V D ++ +GF+ +SS +A + LNG
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 367
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 399 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 458
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 459 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 506
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 507 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 539
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P S + +++F+PFG V+ + R G+ R + + A AI L
Sbjct: 604 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVR------FDNPSCAAAAIDHL 657
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
DG +GG + VR + + N+ + +S ++ + + LYV +L V E
Sbjct: 658 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMT--NLYVSHLPSYVNNER 715
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG------TVESHT 271
L + F G + A+V+ +R ++ FGF+ F+ AL+ +NG +E
Sbjct: 716 LIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRI 775
Query: 272 VAFQPLFPFNYV--LFVSFTYSKPSCRTFGV 300
P +Y+ + FT P+ G+
Sbjct: 776 AGVHPDAMSSYMAHFYSHFTMHDPAKAAVGI 806
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 515 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSATKAVQHM 566
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 567 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 620
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG VV AR+ ++ +G + F + + AA+
Sbjct: 621 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAI 654
>gi|226509575|ref|NP_001149184.1| LOC100282806 [Zea mays]
gi|195625314|gb|ACG34487.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 14/187 (7%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG ++VE P ++YV NLP D L ++F G V EV N ETG
Sbjct: 92 GGEGEGQYAAVEPPEE----AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQ 147
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A AI + D+ GR + V + +R + +P
Sbjct: 148 SRGFGFVTMSTVEEADKAIEMFNRYDISGRLLNVNRASSRGTRMERPQRQFAP------- 200
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E +
Sbjct: 201 --AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELND 258
Query: 260 ALS-LNG 265
A+S L+G
Sbjct: 259 AISALDG 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 90 VEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+E P+ + P YV NLP D S L+++F G V+ +V + ETG SRG G+++M
Sbjct: 191 MERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSM 250
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S +AI ALDG ++ GR +RV + + R
Sbjct: 251 VSKEELNDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|255573485|ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
gi|223532973|gb|EEF34739.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
Length = 278
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 95/176 (53%), Gaps = 8/176 (4%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + + +LYV NLP S + ++ +F GTV VE+ + + G SRG ++T+ S
Sbjct: 74 EETQETTQKRKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQ-KNGRSRGFAFVTLAS 132
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A+ AI LD +V GR +RV F+ + + + S E+ HK+YV NL
Sbjct: 133 GEEAQAAIDKLDSHEVSGRIIRVEFAKRLKPPSPPSPTGTSAR------ETRHKIYVSNL 186
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+W V+ LR F + VS+RV+ D + +GF+SF++ E +AA+S L+G
Sbjct: 187 AWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDG 242
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R ++YV NL + L E F + +S V + TG S G G+++ + A
Sbjct: 174 ARETRHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGYGFVSFATREEA 233
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
+ AI ALDG ++ GR +R++FS
Sbjct: 234 EAAISALDGKELMGRPLRLKFS 255
>gi|449501439|ref|XP_004161367.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like, partial
[Cucumis sativus]
Length = 324
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 13/176 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EEP A+ L+V NLP D +L +F+ GTV EV N ET SRG G++TM +
Sbjct: 140 EEPNEDAK---LFVGNLPYDIDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMST 196
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ A+ A+ + D+ GR + V + SR P +I YVGNL
Sbjct: 197 VEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREPRPFQPTFRI---------YVGNL 247
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
W V L F G VV ARVL+DR +R FGF++ + + DA +L+G
Sbjct: 248 PWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 303
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EPR +YV NLP D L ++F G V+ V + ++G SRG G++TM
Sbjct: 232 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 291
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 292 TGMNDAIAALDGQSLDGRAIRV 313
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
gi|241924453|gb|EER97597.1| hypothetical protein SORBIDRAFT_02g040260 [Sorghum bicolor]
Length = 268
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A A+
Sbjct: 78 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 137
Query: 160 ALDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G GR +RV S R +S +K+YVGNL+W V
Sbjct: 138 QFNGYTFQGRPLRVNCGPPPPRDESAPRAPRGGGGGGGGGSFVDSANKVYVGNLAWGVDN 197
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L N F G V+ A+V++DR+ +R FGF+++ + AE + A+S
Sbjct: 198 STLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAIS 243
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL D S L +F G VL +V + E+G SRG G++T G+ NAI
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRESGRSRGFGFVTYGTAAEVNNAISN 244
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 245 LDGIDLDGRQIRV 257
>gi|3550467|emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
Length = 294
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++YV NLP D L ++F+ G V EV N ET SRG G++TM +I A+ A+
Sbjct: 116 AKVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFVTMSTIEEAEKAVE 175
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
DV GR + V + +R PP+ S ++YVGNL W V L
Sbjct: 176 MFHRYDVNGRLLTVNKAAPRGARVER------PPRD---SGSSFRIYVGNLPWQVDDSRL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F G VV A+V++DR +R FGF++ +S E D A+ +L+G
Sbjct: 227 VELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 273
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D S L+E+F G V+ +V + +TG SRG G++TM S
Sbjct: 203 PRDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDAKVVYDRDTGRSRGFGFVTMASQE 262
Query: 153 SAKNAIIALDGSDVGGREMRV 173
+AI ALDG + GR +RV
Sbjct: 263 ELDDAIAALDGQSLEGRALRV 283
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 7/74 (9%)
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
+ PP++ K+YVGNL + V E L F + G V + V+++R+ +R FGF+
Sbjct: 110 VEPPEEA-------KVYVGNLPYDVDSERLAQLFEQAGVVEVSEVIYNRETDQSRGFGFV 162
Query: 250 SFSSDAERDAALSL 263
+ S+ E + A+ +
Sbjct: 163 TMSTIEEAEKAVEM 176
>gi|88911212|gb|ABD58896.1| chloroplast single strand DNA binding protein [Mesostigma viride]
Length = 299
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 95/187 (50%), Gaps = 12/187 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++ S A +LYV NL S D L + F FG V + EV + E+G SRG ++TM S
Sbjct: 81 DQATSTAASTKLYVGNLAWSCDDEMLNQAFSQFGEVKAAEVVLDRESGRSRGFAFVTMAS 140
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS-----------PPKKIFVY 199
++A+ A LDG+++ GR +RV F R AE P+
Sbjct: 141 PDAAEKARRGLDGTELAGRAIRVNFPQPKGERAPRAERGERSERSERSERTYTPRGDGEA 200
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
++LYVGNL W++ L + F FGTV ARV+ DR +R F F++ S+ E +
Sbjct: 201 GDANRLYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANE 260
Query: 260 ALS-LNG 265
A++ L+G
Sbjct: 261 AMANLDG 267
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S D L ++F FGTV V + ++G SRG ++ + + A A+ L
Sbjct: 206 LYVGNLPWSMDDGMLEDLFMEFGTVNYARVVMDRDSGRSRGFAFVALSTPEEANEAMANL 265
Query: 162 DGSDVGGREMRVRFS 176
DG ++GGR +RV +
Sbjct: 266 DGEEIGGRTIRVNLA 280
>gi|449515273|ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 288
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 18/212 (8%)
Query: 74 NGKDNVGG--------NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125
N N GG EV + + EE + + +LY+ NLP S + ++ E+F GT
Sbjct: 60 NSSRNRGGGARLCSALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGT 119
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V VE+ + + G SRG ++TM S + A+ AI D ++ GR ++V F+ R
Sbjct: 120 VSDVEIIKQ-KNGRSRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA------KRL 172
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
+ P E+ +KLYV NL+W V+ +LR+ F ++ARV+ D +
Sbjct: 173 KKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAG 232
Query: 246 FGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
+GF+SF++ E ALS ++E + +PL
Sbjct: 233 YGFVSFATREEAQTALS---SLEGKELMGRPL 261
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L + F ++ V + G S G G+++ + A+ A+ +
Sbjct: 191 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 250
Query: 161 LDGSDVGGREMRVRFS 176
L+G ++ GR +R++FS
Sbjct: 251 LEGKELMGRPLRLKFS 266
>gi|449462067|ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
sativus]
Length = 282
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 102/196 (52%), Gaps = 10/196 (5%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
EV + + EE + + +LY+ NLP S + ++ E+F GTV VE+ + + G SR
Sbjct: 70 QEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQ-KNGRSR 128
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++TM S + A+ AI D ++ GR ++V F+ R + P E+
Sbjct: 129 GFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFA------KRLKKPPPPKPPGPPPGET 182
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+KLYV NL+W V+ +LR+ F ++ARV+ D + +GF+SF++ E AL
Sbjct: 183 VNKLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTAL 242
Query: 262 SLNGTVESHTVAFQPL 277
S ++E + +PL
Sbjct: 243 S---SLEGKELMGRPL 255
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L + F ++ V + G S G G+++ + A+ A+ +
Sbjct: 185 KLYVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSS 244
Query: 161 LDGSDVGGREMRVRFS 176
L+G ++ GR +R++FS
Sbjct: 245 LEGKELMGRPLRLKFS 260
>gi|413921823|gb|AFW61755.1| ribonucleoprotein [Zea mays]
Length = 286
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG ++VE P ++YV NLP D L ++F G V EV N ETG
Sbjct: 92 GGEGEGQYAAVEPPEE----AKVYVGNLPYDVDSEGLAQIFDQAGVVEVAEVIYNRETGQ 147
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A AI D+ GR + V + +R + +P
Sbjct: 148 SRGFGFVTMSTVEEADKAIEMFSRYDISGRLLNVNRASSRGTRMERPQRQFAP------- 200
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ YVGNL W V L F G VV A+V++DR+ +R FGF+S S E +
Sbjct: 201 --AFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSMVSKEELND 258
Query: 260 ALS-LNG 265
A+S L+G
Sbjct: 259 AISALDG 265
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 90 VEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+E P+ + P YV NLP D S L+++F G V+ +V + ETG SRG G+++M
Sbjct: 191 MERPQRQFAPAFRAYVGNLPWQVDDSRLVQLFSEHGEVVDAKVVYDRETGRSRGFGFVSM 250
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S +AI ALDG ++ GR +RV + + R
Sbjct: 251 VSKEELNDAISALDGQELDGRPLRVNVAAERPQR 284
>gi|356525630|ref|XP_003531427.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 72 LYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+++GGRE++V ++ + L+ + F+ +SPHK+YVGNL+ V + L+N
Sbjct: 132 NGTEIGGREVKV--NVTEKPLSTPDLPLLQAEESEFI-DSPHKVYVGNLAKTVTTDTLKN 188
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL--NGTVESHTV 272
F G V+SA+V + +GF++FSS+ + +AA+S N +E T+
Sbjct: 189 FFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQTI 241
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 14/123 (11%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDDSS-------------VEEPRSRARPCELYVCNLPRS 110
E+A V +++NG + +GG EV + + EE P ++YV NL ++
Sbjct: 122 EDATAVIEKLNGTE-IGGREVKVNVTEKPLSTPDLPLLQAEESEFIDSPHKVYVGNLAKT 180
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L F G VLS +VSR P T S G G++T S + AI + + S + G+
Sbjct: 181 VTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSFNNSLLEGQT 240
Query: 171 MRV 173
+RV
Sbjct: 241 IRV 243
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +LYVGN+ V E+L G V A V++D+ +R F F++ + + A
Sbjct: 68 SARRLYVGNIPRTVTNEELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAV 127
Query: 261 L-SLNGT 266
+ LNGT
Sbjct: 128 IEKLNGT 134
>gi|116786296|gb|ABK24055.1| unknown [Picea sitchensis]
Length = 299
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 91/180 (50%), Gaps = 27/180 (15%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V NLP S D +EL E+FK G V VEV + +TG SRG ++TM + A A+
Sbjct: 114 KVFVGNLPWSVDSAELAELFKDSGDVTMVEVIYDRQTGRSRGFAFVTMATQADADEAVEK 173
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV-------------YESPHKLYV 207
+G + GR +RV + PPK F Y S ++++V
Sbjct: 174 FNGYEYQGRTLRV-------------NSGPPPPKDSFAPRGGFRNEKPSGNYNSANRVFV 220
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
GNL W L F G V+ A+V++DR+ +R FGF++ SS E + A+ SL+G+
Sbjct: 221 GNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSLDGS 280
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NLP D L ++F G V+ +V + ETG SRG G++T+ S + AI +L
Sbjct: 218 VFVGNLPWGADDLSLEQLFSDHGKVMEAKVVYDRETGRSRGFGFVTLSSPQEIEEAISSL 277
Query: 162 DGSDVGGREMRV 173
DGSD+ GR+++V
Sbjct: 278 DGSDMDGRQIKV 289
>gi|1015370|gb|AAA79045.1| 24 kDa RNA binding protein, partial [Spinacia oleracea]
Length = 220
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 96/170 (56%), Gaps = 13/170 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP + D +EL +F GTV VEV + TG SRG G++TM S+ + A
Sbjct: 38 LKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAAQ 97
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK---KIFVYESPHKLYVGNLSWAVKP 216
+ ++ GR +RV T ++ ++ P+ + + S ++++VGNLSW V
Sbjct: 98 QFNNYELDGRTLRV---------TEDSHKDMTLPRVESECDSFGSSNRVHVGNLSWKVDD 148
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L+ F G VV A+V++DR +R FGF++++S E + A+ SL+G
Sbjct: 149 DALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDG 198
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L +F G V+ +V + +TG SRG G++T S N AI +L
Sbjct: 137 VHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESL 196
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 197 DGVDLNGRSIRV 208
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 126 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 182
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 183 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 233
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G
Sbjct: 234 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 288
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F G V+ V + ETG SRG G++TM ++ AI AL
Sbjct: 227 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 286
Query: 162 DGSDVGGREMRV 173
DG ++ GR +RV
Sbjct: 287 DGQNLEGRAIRV 298
>gi|242047468|ref|XP_002461480.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
gi|241924857|gb|EER98001.1| hypothetical protein SORBIDRAFT_02g003310 [Sorghum bicolor]
Length = 338
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 96/189 (50%), Gaps = 31/189 (16%)
Query: 93 PRSRAR----PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP ++ EL ++F G V ++ + T SRG ++TM
Sbjct: 99 PRSRPTRGDDPGRLFVGNLPYTYTSEELAQVFAEAGRVDDAQIIYDKVTNRSRGFAFVTM 158
Query: 149 GSINSAKNAIIALDGSDVGGREMRV----------RFSIDMNSRTRNAEALISPPKKIFV 198
+ A AI DG+ +GGR RV R ++ M R R+
Sbjct: 159 ATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMAGRRRD------------- 205
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R FGF+SF + +
Sbjct: 206 -DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRGFGFVSFRTAEDA 263
Query: 258 DAAL-SLNG 265
AAL +L+G
Sbjct: 264 QAALEALDG 272
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ A
Sbjct: 210 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFRTAEDAQAALEA 269
Query: 161 LDGSDVGGREMRV 173
LDG ++ GR +R+
Sbjct: 270 LDGVELEGRPLRL 282
>gi|224138144|ref|XP_002326529.1| predicted protein [Populus trichocarpa]
gi|222833851|gb|EEE72328.1| predicted protein [Populus trichocarpa]
Length = 294
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 127/267 (47%), Gaps = 27/267 (10%)
Query: 2 AAATGFLTTSSSLFTK--ITPPATPKRFGF-TSLPTLI---NFQYPKLSSCWSRSHPAGF 55
AA F +T +++ ++P + P S PT + NF P L+ RS F
Sbjct: 8 AATLSFFSTHHPSYSRFFLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNHPRSKSLCF 67
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
+ + + V E V + E + ++E + + L+V NLP SF + +
Sbjct: 68 Q-LCSTVQEVTVEITPE--------------EEEIQEANLKRK---LFVVNLPWSFSVVD 109
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
+ ++F GTV VE+ + + G SRG ++TM + A+ AI + +V GR +RV F
Sbjct: 110 IKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEF 168
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ + R + L P I E+ HKLY+ NL+W V+ LR F VS+RV+
Sbjct: 169 AKRL--RRPPSPRLPGTPADIPAGETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVV 226
Query: 236 HDRKGQTTRVFGFISFSSDAERDAALS 262
D + +GF+SF++ E AA+S
Sbjct: 227 FDGPAGRSSGYGFVSFATREEAVAAIS 253
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NL S L E F +S V + G S G G+++ + A AI A
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 161 LDGSDVGGREMRVRFSID 178
G ++ GR +R++FS D
Sbjct: 255 FSGKELMGRPIRLKFSED 272
>gi|297816490|ref|XP_002876128.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
gi|297321966|gb|EFH52387.1| hypothetical protein ARALYDRAFT_348313 [Arabidopsis lyrata subsp.
lyrata]
Length = 467
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 102/187 (54%), Gaps = 3/187 (1%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + +L+ FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSSPDLSLLQSEDSAFV-DSP 177
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-L 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA L
Sbjct: 178 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIL 237
Query: 262 SLNGTVE 268
+LN + +
Sbjct: 238 ALNNSAK 244
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ +YV NLP +L +F GTV EV N ET SRG G++TM ++
Sbjct: 111 EPPEEAK---IYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTV 167
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ AI + ++ GR + V + SR PP+ V E +++YVGNL
Sbjct: 168 EESDKAIEMFNRYNLDGRLLTVNKAAPRGSRPER------PPR---VSEPSYRIYVGNLP 218
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
W V L F G VVSA+V+ D + +R FGF++ SS++E DA +L+G
Sbjct: 219 WGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAALDG 273
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 51/91 (56%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L E+F G V+S +V + ETG SRG G++TM S +
Sbjct: 203 PRVSEPSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSES 262
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
+AI ALDG ++ GR +RV + + R+
Sbjct: 263 ELNDAIAALDGQELDGRAIRVNVAAERPRRS 293
>gi|118487510|gb|ABK95582.1| unknown [Populus trichocarpa]
Length = 198
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
SEL E+F+ G V EV + T SRG G++TM S+ AK AI +GS VGGR +RV
Sbjct: 4 SELAEVFEEAGRVFGAEVICDRVTDRSRGFGFVTMESVEEAKEAIRMFNGSQVGGRTLRV 63
Query: 174 RF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
F + E I K F+ +S HK+Y GNL W + E L + F ++SA
Sbjct: 64 NFPEVPRGGEREVMEPRIRSGYKGFI-DSEHKIYAGNLGWRLTSEGLGDAFANQPGLLSA 122
Query: 233 RVLHDRKGQTTRVFGFISFSS 253
+V+++R +R FGF+SF S
Sbjct: 123 KVIYERDTGRSRGFGFVSFDS 143
>gi|118489861|gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 294
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP SF + ++ ++F GTV VE+ + + G SRG ++TM + A+ AI
Sbjct: 95 KLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQ-KNGRSRGFAFVTMTTGEEAQAAIDK 153
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ +V GR +RV F+ + R + L P I E+ HKLY+ NL+W V+ LR
Sbjct: 154 FNSLEVSGRIIRVEFAKRL--RRPPSPRLPGTPADIPAGETRHKLYISNLAWKVRGSHLR 211
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F VS+RV+ D + +GF+SF++ E AA+S
Sbjct: 212 EFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAIS 253
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NL S L E F +S V + G S G G+++ + A AI A
Sbjct: 195 KLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISA 254
Query: 161 LDGSDVGGREMRVRFSID 178
G ++ GR +R++FS D
Sbjct: 255 FSGKELMGRPIRLKFSED 272
>gi|414887732|tpg|DAA63746.1| TPA: hypothetical protein ZEAMMB73_977373 [Zea mays]
Length = 267
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A A+
Sbjct: 77 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAGAAVE 136
Query: 160 ALDGSDVGGREMRVRFSIDM---NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G GR +RV S R +S +K+YVGNL+W V
Sbjct: 137 QFNGYTFQGRPLRVNCGPPPPRDGSAPRAPRGGGGGGGGGSFVDSGNKVYVGNLAWGVDN 196
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L N F G V+ A+V++DR +R FGF+++ S E + A+S
Sbjct: 197 STLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAIS 242
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL D S L +F G VL +V + ++G SRG G++T GS NAI
Sbjct: 184 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 243
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 244 LDGIDLDGRQIRV 256
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|18921322|gb|AAL82527.1|AC084766_13 putative ribonucleoprotein [Oryza sativa Japonica Group]
gi|108708430|gb|ABF96225.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548692|dbj|BAF12135.1| Os03g0376600 [Oryza sativa Japonica Group]
gi|125586437|gb|EAZ27101.1| hypothetical protein OsJ_11032 [Oryza sativa Japonica Group]
gi|215697052|dbj|BAG91046.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766568|dbj|BAG98727.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 18/172 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVK 215
+G + GR +RV NS PP++ +P +++YVGNLSW V
Sbjct: 146 QFNGYILDGRSLRV------NSGP-------PPPREQSSQRAPRGEANRVYVGNLSWGVD 192
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
L N F G V+ A+V++DR+ +R FGF+++ S E + A+S L+G
Sbjct: 193 NAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGA 244
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G +
Sbjct: 114 MVEVIYDKLTG---RSRGFGFVTMSSVEEVEAAV--EQFNGYILDGRSLRVNSGPPPPRE 168
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D + L +F G VL +V + E+G SRG G++
Sbjct: 169 QSSQRAPRGEAN--RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NA+ LDG+D+ GR++RV
Sbjct: 227 TYGSAEEVENAVSNLDGADMDGRQIRV 253
>gi|302822192|ref|XP_002992755.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
gi|300139400|gb|EFJ06141.1| hypothetical protein SELMODRAFT_4991 [Selaginella moellendorffii]
Length = 177
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 90/173 (52%), Gaps = 22/173 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL + D EL ++ + G + VE V + ETG SRG GY+T+ SI+ A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK------IFVYESPHKLYVGNLSWAV 214
LDG V GR ++ FS P KK + V S K+++GNL W V
Sbjct: 63 LDGHIVQGRALKASFS--------------QPYKKAGKEGPVEVAASHTKVFIGNLPWGV 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
L F G VV A++++DR +R FGF++ SS E D A+ SL+G
Sbjct: 109 DDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGA 161
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A ++++ NLP D L E F+ G V+ ++ + +TG SRG G++T+ S A
Sbjct: 94 ASHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEAKIVYDRDTGRSRGFGFVTLSSPKEADE 153
Query: 157 AIIALDGSDVGGREMRVRFS 176
A+ +LDG+D GR +RV+ +
Sbjct: 154 AVKSLDGADCDGRRLRVKLA 173
>gi|125544079|gb|EAY90218.1| hypothetical protein OsI_11785 [Oryza sativa Indica Group]
Length = 265
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 94/172 (54%), Gaps = 18/172 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
++V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S+ + A+
Sbjct: 86 LRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVE 145
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAVK 215
+G + GR +RV NS PP++ +P +++YVGNLSW V
Sbjct: 146 QFNGYILDGRSLRV------NSGP-------PPPREQSSRRAPRGEANRVYVGNLSWGVD 192
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
L N F G V+ A+V++DR+ +R FGF+++ S E + A+S L+G
Sbjct: 193 NAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGA 244
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 15/147 (10%)
Query: 35 LINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING--------KDNVGGNEVDD 86
++ Y KL+ RS GF ++ +V + EA V ++ NG + N G +
Sbjct: 114 MVEVIYDKLTG---RSRGFGFVTMSSVEEVEAAV--EQFNGYILDGRSLRVNSGPPPPRE 168
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS PR A +YV NL D + L +F G VL +V + E+G SRG G++
Sbjct: 169 QSSRRAPRGEAN--RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFV 226
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
T GS +NA+ LDG+D+ GR++RV
Sbjct: 227 TYGSAEEVENAVSNLDGADMDGRQIRV 253
>gi|225440003|ref|XP_002281642.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic isoform 1 [Vitis
vinifera]
Length = 288
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 13/196 (6%)
Query: 83 EVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E D+D +E P +L+V NLP + D + L +F+ G V VEV + TG SR
Sbjct: 72 EQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSR 131
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV--------RFSIDM---NSRTRNAEALI 190
G G++TM ++ + A +G ++ GR++RV R + + NS R
Sbjct: 132 GFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNF 191
Query: 191 SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
P+ S +++YVGNLSW V L F G V ARV++DR+ +R FGF++
Sbjct: 192 RGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVT 251
Query: 251 FSSDAERDAAL-SLNG 265
++S E + A+ SL+G
Sbjct: 252 YNSAEEVNRAIESLDG 267
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V V + ETG SRG G++T S AI +L
Sbjct: 206 IYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESL 265
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 266 DGVDLNGRSIRV 277
>gi|357457543|ref|XP_003599052.1| 30S ribosomal protein [Medicago truncatula]
gi|355488100|gb|AES69303.1| 30S ribosomal protein [Medicago truncatula]
Length = 235
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 10/178 (5%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++V+ P R +LYV N+PR+ EL ++ + G V EV + + SR +
Sbjct: 50 EQATVDSPALR----KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPKKIFVYESPHK 204
+TM ++ A A L+G+++GGRE++V ++ + E L + + FV +SP+K
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTEGLPVQAGESTFV-DSPYK 160
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+YVGNL+ V + L+ F G +SA+V + FGF++FSSD + +AA+S
Sbjct: 161 VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAIS 218
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA-------------RPCELYVCNLPRS 110
E+A +++NG + +GG E+ + + E+P + P ++YV NL ++
Sbjct: 112 EDANAAAEKLNGTE-IGGREIKVNIT-EKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKN 169
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F G LS +VSR P T S G G++T S + AI + + + + G++
Sbjct: 170 VTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQK 229
Query: 171 MRV 173
+RV
Sbjct: 230 IRV 232
>gi|388508598|gb|AFK42365.1| unknown [Medicago truncatula]
Length = 235
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 98/178 (55%), Gaps = 10/178 (5%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++V+ P R +LYV N+PR+ EL ++ + G V EV + + SR +
Sbjct: 50 EQATVDSPALR----KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAF 105
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-ISPPKKIFVYESPHK 204
+TM ++ A A L+G+++GGRE++V ++ + E L + + FV +SP+K
Sbjct: 106 VTMKTVEDANAAAEKLNGTEIGGREIKV----NITEKPLTTEGLPVQAGESTFV-DSPYK 160
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+YVGNL+ V + L+ F G +SA+V + FGF++FSSD + +AA+S
Sbjct: 161 VYVGNLAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAIS 218
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA-------------RPCELYVCNLPRS 110
E+A +++NG + +GG E+ + + E+P + P ++YV NL ++
Sbjct: 112 EDANAAAEKLNGTE-IGGREIKVNIT-EKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKN 169
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L + F G LS +VSR P T S G G++T S + AI + + + + G++
Sbjct: 170 VTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQK 229
Query: 171 MRV 173
+RV
Sbjct: 230 IRV 232
>gi|218195846|gb|EEC78273.1| hypothetical protein OsI_17967 [Oryza sativa Indica Group]
Length = 1001
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 372 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 430
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+S+G G++ S + A A+I L+G V GR++ VR S + S N+ A+ SP V
Sbjct: 431 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS-GIPSTLPNS-AVESPSTTRTV 488
Query: 199 YE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAE 256
E LYV N+ ++ + L F FG + ARV+ D + + +GFI F+ S++
Sbjct: 489 KEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESA 548
Query: 257 RDAALSLNGTV 267
A ++NG +
Sbjct: 549 TKAIAAMNGAL 559
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 299 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 358
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 359 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 406
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + F FG V +A+V D ++ +GF+ +SS +A + LNG
Sbjct: 407 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 455
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 476 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 535
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 536 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 583
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 584 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 616
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P S + +++F+PFG V+ + R G+ R + + A AI L
Sbjct: 681 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVR------FDNPSCAAAAIDHL 734
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
DG +GG + VR + + N+ + +S ++ + + LYV +L V E
Sbjct: 735 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMT--NLYVSHLPSYVNNER 792
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG------TVESHT 271
L + F G + A+V+ +R ++ FGF+ F+ AL+ +NG +E
Sbjct: 793 LIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRI 852
Query: 272 VAFQPLFPFNYV--LFVSFTYSKPSCRTFGV 300
P +Y+ + FT P+ G+
Sbjct: 853 AGVHPDAMSSYMAHFYSHFTMHDPAKAAVGI 883
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 592 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSAIKAVQHM 643
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 644 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 697
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG VV AR+ ++ +G + F + + AA+
Sbjct: 698 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAI 731
>gi|90399074|emb|CAJ86296.1| H0124B04.13 [Oryza sativa Indica Group]
Length = 913
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 5/191 (2%)
Query: 79 VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
V G +D+S ++P +LYVCNL S + L+ +F PFG V + +V+++ TG
Sbjct: 284 VAGFPSSEDNS-QQPSKETDMAKLYVCNLSLSMNTDRLIHLFLPFGEVTNAKVAKDHTTG 342
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+S+G G++ S + A A+I L+G V GR++ VR S + S N+ A+ SP V
Sbjct: 343 LSKGYGFVQYSSPHHAAEAVIHLNGRLVDGRKIEVRVS-GIPSTLPNS-AVESPSTTRTV 400
Query: 199 YE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAE 256
E LYV N+ ++ + L F FG + ARV+ D + + +GFI F+ S++
Sbjct: 401 KEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSESA 460
Query: 257 RDAALSLNGTV 267
A ++NG +
Sbjct: 461 TKAIAAMNGAL 471
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ V + TG+S+G G++ A AI +
Sbjct: 211 LYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSDPRCASEAIKRM 270
Query: 162 DGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V GR + VR S + NS+ + E ++ KLYV NLS ++ +
Sbjct: 271 NGRLVEGRALEVRVAGFPSSEDNSQQPSKETDMA------------KLYVCNLSLSMNTD 318
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L + F FG V +A+V D ++ +GF+ +SS +A + LNG
Sbjct: 319 RLIHLFLPFGEVTNAKVAKDHTTGLSKGYGFVQYSSPHHAAEAVIHLNG 367
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 22/153 (14%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+S+VE P + E LYVCN+P S D +L+E+F PFG + V +P+T ++
Sbjct: 388 NSAVESPSTTRTVKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAK 447
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++ SA AI A++G+ VGG + VR A +SP I ++
Sbjct: 448 GYGFIKFTDSESATKAIAAMNGALVGGEMIIVRV------------AGLSPSASISAVQT 495
Query: 202 PH-----KLYVGNLSWAVKPEDLRNHFGRFGTV 229
+LY+ NL ++ + + N F FG +
Sbjct: 496 TQDINKSRLYITNLPRSMTADKMVNLFAPFGQI 528
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 20/211 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P S + +++F+PFG V+ + R G+ R + + A AI L
Sbjct: 593 LYVGRVPSSLTEDQFIDLFRPFGRVVQARMFRFQRYGMVR------FDNPSCAAAAIDHL 646
Query: 162 DGSDVGGREMRVRFS---IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
DG +GG + VR + + N+ + +S ++ + + LYV +L V E
Sbjct: 647 DGYQIGGSILAVRVAGLPAESNAAKGALTSQMSSNEQGQIDMT--NLYVSHLPSYVNNER 704
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG------TVESHT 271
L + F G + A+V+ +R ++ FGF+ F+ AL+ +NG +E
Sbjct: 705 LIDLFLPCGQITQAKVVVERYTGVSKGFGFVKFADAYSAAVALTHMNGYPLDGHVLEVRI 764
Query: 272 VAFQPLFPFNYV--LFVSFTYSKPSCRTFGV 300
P +Y+ + FT P+ G+
Sbjct: 765 AGVHPDAMSSYMAHFYSHFTMHDPAKAAVGI 795
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 20/160 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NLPRS +++ +F PFG + +V N E + + SA A+ +
Sbjct: 504 LYITNLPRSMTADKMVNLFAPFGQI--TKVLMNLEYSL------VWYADAPSAIKAVQHM 555
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG V G+ + V+ S T ++A P K+I + LYVG + ++ + +
Sbjct: 556 DGYMVEGKRLVVKRS--ELCTTNASQAGGKPIKEIDMA----NLYVGRVPSSLTEDQFID 609
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG VV AR+ ++ +G + F + + AA+
Sbjct: 610 LFRPFGRVVQARMFRFQR------YGMVRFDNPSCAAAAI 643
>gi|449440111|ref|XP_004137828.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
gi|449483348|ref|XP_004156563.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Cucumis
sativus]
Length = 278
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 9/187 (4%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G EVD D S S A +L+V NLP + D ++L +F+ G V VEV + TG
Sbjct: 78 GTLEVDGDDS-----SYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVERVEVIYDKTTGR 132
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ + A +G ++ GR +RV + R ++ + +
Sbjct: 133 SRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRD---DSSFRGSRNASRF 189
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
++ ++++V NL+W V L N F G V+ A+V++DR +R FGF++++S E +
Sbjct: 190 DNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVTYNSAEEVNE 249
Query: 260 AL-SLNG 265
A+ SL+G
Sbjct: 250 AIQSLDG 256
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 86 DDSSVEEPRSRAR---PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
DDSS R+ +R ++V NL D L +F+ G VL +V + ++G SRG
Sbjct: 176 DDSSFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRG 235
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G++T S AI +LDG D+ GR +RV +A PP++ F
Sbjct: 236 FGFVTYNSAEEVNEAIQSLDGVDLDGRPIRV------------TQAEARPPRRQF 278
>gi|357121842|ref|XP_003562626.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 275
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 89/177 (50%), Gaps = 28/177 (15%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + D ++L +F+ G+V VEV + TG SRG G++TM + A+
Sbjct: 85 KLFVGNLPFTVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSTAEEVSAAVEQ 144
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV---------------YESPHKL 205
+G GR +RV NS PP+ F ++S +KL
Sbjct: 145 FNGYTFQGRPLRV------NSGP-------PPPRDEFAPRTPRGMGGGGGGGSFDSGNKL 191
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
YVGNLSW V L N F G V+ A+V++DR +R FGF+++ S E + A+S
Sbjct: 192 YVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAIS 248
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL D S L +F G VL +V + ++G SRG G++T GS + NAI
Sbjct: 190 KLYVGNLSWGVDNSTLENLFSEQGKVLDAKVIYDRDSGRSRGFGFVTYGSADEVNNAISN 249
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 250 LDGVDLDGRQIRV 262
>gi|356557128|ref|XP_003546870.1| PREDICTED: 30S ribosomal protein 2, chloroplastic-like [Glycine
max]
Length = 246
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 97/179 (54%), Gaps = 17/179 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ EL ++ + G V EV + +G SR ++TM ++ A I L
Sbjct: 72 LYVGNIPRTVTNDELAKIVQEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDATAVIEKL 131
Query: 162 DGSDVGGREMRVRFS------IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G+++GGRE++V + +D+ L+ + F+ +SPHK+YVGNL+ V
Sbjct: 132 NGTELGGREIKVNVTEKPLSTLDL--------PLLQAEESEFI-DSPHKVYVGNLAKTVT 182
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL--NGTVESHTV 272
+ L+N F G V+SA+V + +GF++F S+ + +AA+S N +E T+
Sbjct: 183 TDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQTI 241
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 64 EEAVVVEDEINGKDNVGGNEVDDD------SSVEEPRSRAR-------PCELYVCNLPRS 110
E+A V +++NG + +GG E+ + S+++ P +A P ++YV NL ++
Sbjct: 122 EDATAVIEKLNGTE-LGGREIKVNVTEKPLSTLDLPLLQAEESEFIDSPHKVYVGNLAKT 180
Query: 111 FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170
L F G VLS +VSR P T S G G++T S + AI + + S + G+
Sbjct: 181 VTTDTLKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFPSEEDVEAAISSFNNSLLEGQT 240
Query: 171 MRV 173
+RV
Sbjct: 241 IRV 243
>gi|1054915|gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
Length = 292
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 107/224 (47%), Gaps = 20/224 (8%)
Query: 60 AVVDEEAVVVEDE--INGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDIS 114
AV+DEE V + E +N +D +E S + P E LYV NLP D
Sbjct: 70 AVIDEEENVEKTEAAVNWED---ASEPQPSSGFGSEDGFSEPSEDVKLYVGNLPFDVDSE 126
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
+L MF G V EV N ET SRG G++TM ++ A A+ ++ GR + V
Sbjct: 127 KLANMFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEMFHSYELNGRLLTVN 186
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+ SR A P + ES YVGNL W V + L G V+SARV
Sbjct: 187 KAAPRGSRPEKAPREFCP----LLSES----YVGNLPWDVDNDRLEQLSSEHGKVLSARV 238
Query: 235 LHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTVESHTVAFQPL 277
+ DR+ + +R FGF++ +S+ E DA L G ++ ++ +P+
Sbjct: 239 VSDRETERSRGFGFVTMASETEMNDATL---GALDGESLEGRPI 279
>gi|303286031|ref|XP_003062305.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455822|gb|EEH53124.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 227
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 91/169 (53%), Gaps = 3/169 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL D S L ++F + + V + TG SRG G++ + S A+ AI
Sbjct: 42 PVKLYVGNLSWGVDDSMLTDVFAEY-DASGIAVISDMNTGRSRGFGFVEVPSQEIAEKAI 100
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG+DV GR +RV S +SR + E P++ K+Y GNLSW +
Sbjct: 101 AELDGADVDGRPIRVNISEARSSRREYDGERGERAPRERNYDFDARKVYFGNLSWGMDHL 160
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
DL++ G +G V +R++ DR+ +R FGF++ SS + + ++ LNG
Sbjct: 161 DLQDLCGEYGEVADSRLITDRETGRSRGFGFVTMSSAEQAEKVVNGLNG 209
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
E D + PR R + +Y NL D +L ++ +G V + + ETG
Sbjct: 126 EYDGERGERAPRERNYDFDARKVYFGNLSWGMDHLDLQDLCGEYGEVADSRLITDRETGR 185
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
SRG G++TM S A+ + L+G DV GR +RV +
Sbjct: 186 SRGFGFVTMSSAEQAEKVVNGLNGQDVDGRVLRVNIA 222
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NLP D L +F+ G V EV N ET SRG G+++M ++ A+ A+
Sbjct: 127 AKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVD 186
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ GR + V + S+ PP+ V+E ++YVGNL W V L
Sbjct: 187 MFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVGNLPWDVDSARL 237
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F G VV ARV+ DR+ +R FGF++ SS E + A++
Sbjct: 238 EQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIA 280
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V+ V + ETG SRG G++TM S ++AI A
Sbjct: 223 MYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAAT 282
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
DG + GR +RV + + R+
Sbjct: 283 DGQTLDGRTIRVNVAEERPRRS 304
>gi|359806184|ref|NP_001240946.1| uncharacterized protein LOC100812934 [Glycine max]
gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 94/175 (53%), Gaps = 7/175 (4%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+R +L+V NLP S D + L E+F+ G V VEV + TG SRG G++TM S+ A+
Sbjct: 86 SRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSRGFGFVTMSSVEEAEA 145
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSW 212
A +G ++ GR +RV S +R +A P ++++VGNL+W
Sbjct: 146 AAKQFNGYELDGRSLRVN-SGPPPARNESAPRFRGGSSFGSRGGGPSDSENRVHVGNLAW 204
Query: 213 AVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
V L + F G V+ ARV++DR+ +R FGF++F S D + A SL+G
Sbjct: 205 GVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQSLDG 259
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V NL D L +F+ G VL V + E+G SRG G++T GS + K+AI +
Sbjct: 197 VHVGNLAWGVDDVALESLFREQGKKVLEARVIYDRESGRSRGFGFVTFGSPDEVKSAIQS 256
Query: 161 LDGSDVGGREMRVRFS 176
LDG D+ GR +RV +
Sbjct: 257 LDGVDLNGRAIRVSLA 272
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S EP A+ ++V NLP D L +F+ G V EV N ET SRG G+++M
Sbjct: 140 SYSEPPEEAK---VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSM 196
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ A+ A+ ++ GR + V + S+ PP+ V+E ++YVG
Sbjct: 197 STVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVG 247
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG-T 266
NL W V L F G VV ARV+ DR+ +R FGF++ SS E DA + +G T
Sbjct: 248 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQT 307
Query: 267 VESHTV 272
++ T+
Sbjct: 308 LDGRTI 313
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V+ V + ETG SRG G++TM S ++AI A
Sbjct: 244 MYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAAT 303
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
DG + GR +RV + + R+
Sbjct: 304 DGQTLDGRTIRVNVAEERPRRS 325
>gi|242077714|ref|XP_002448793.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
gi|241939976|gb|EES13121.1| hypothetical protein SORBIDRAFT_06g033290 [Sorghum bicolor]
Length = 1076
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 4/170 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYVCNLP +L ++F P+G V SV+V R+ TG+S+G G++ A +AI
Sbjct: 320 KLYVCNLPLLLHEDKLHDLFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQ 379
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDL 219
L+G + G++M VR + +S + + IS E +YV NL + + L
Sbjct: 380 LNGHLIEGKKMEVRVAAVSSSGSNTSVQAISETDHQLTKEVDMSNVYVQNLPLLMNTDKL 439
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTV 267
N F +G V SA+V D ++ +GF+ FS DA A + LNG +
Sbjct: 440 LNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAH-AVIELNGCL 488
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 19/181 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP + +LL +F P+G V S +V+ + +GIS+G G++ + A +A+I L
Sbjct: 425 VYVQNLPLLMNTDKLLNLFLPYGKVTSAKVAMDYTSGISKGYGFVKFSDPHDAAHAVIEL 484
Query: 162 DGSDVGGREMRVRFS-----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G V GR++ VR ++ ++ R + + LYV N+ ++
Sbjct: 485 NGCLVEGRKILVRVRPPSSPVESHANNRTLKEI-----------DMSNLYVCNIPSSMNK 533
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGT-VESHTVAF 274
L F FG + A V+ ++ +++ +GF+ F+ S +A +NG +E T++
Sbjct: 534 AKLVELFLPFGRITHAMVV-EQSNNSSKGYGFVKFADSHCAAEAVAMMNGALIEGETISV 592
Query: 275 Q 275
+
Sbjct: 593 R 593
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S +L+E+F PFG ++ V + TG S+G G++ A AI +
Sbjct: 231 LFVGNLPPSLASHKLIELFLPFGRIVKSRVVDDCFTGSSKGYGFVQYSDPRYAAEAIKHM 290
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G V GR + VR + S E +S KLYV NL + + L +
Sbjct: 291 NGRMVEGRMLEVRLA-GAPSSGSTKEMDMS------------KLYVCNLPLLLHEDKLHD 337
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +G V S +V+ D ++ +GF+ +S A+ LNG
Sbjct: 338 LFVPYGQVTSVKVMRDHATGLSKGYGFVRYSDPQHAAHAIFQLNG 382
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV NLP++ +L+ +F PFG + V + ++ INSA A+
Sbjct: 623 CRLYVTNLPQTMSADKLVSLFMPFGQIDRVVMYAE--------YSFVLYADINSAAKALK 674
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPED 218
+DG + G+ + V+ S + + A++ S V E LYVG + AV E
Sbjct: 675 HMDGYLIEGKRLVVKGSEPLPANA--AQSACSQSGSKLVKEIDMANLYVGRVPSAVTCEQ 732
Query: 219 LRNHFGRFGTVVSAR 233
L F +G +V A+
Sbjct: 733 LVQIFCLYGEIVQAK 747
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV LP +L+E+F P G + +V + TG+S+G G++ SA AI +
Sbjct: 816 LYVGYLPPYVTTDKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHM 875
Query: 162 DGSDVGGREMRVR 174
+G + G + VR
Sbjct: 876 NGYPLDGHMLAVR 888
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 25/213 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +P + +L+++F +G ++ + G G + + +SA AI L
Sbjct: 719 LYVGRVPSAVTCEQLVQIFCLYGEIVQAK-------KFDAGYGMIRYANASSAAAAIDHL 771
Query: 162 DGSDVGGREMRVRFS-----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
DG +GG + VR + D+ + R + + ++I + LYVG L V
Sbjct: 772 DGYQIGGSTLVVRVAGLPAESDVATFARTPQTPGNEHRQIDMT----NLYVGYLPPYVTT 827
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT-VESHTVA- 273
+ L F G + A+V+ D+ ++ FGF+ F+ A++ +NG ++ H +A
Sbjct: 828 DKLIELFLPCGQITQAKVVVDKFTGVSKGFGFVRFADAYSAATAITHMNGYPLDGHMLAV 887
Query: 274 ----FQPLFPFNYV--LFVSFTYSKPSCRTFGV 300
QP +Y+ + FT + PS G+
Sbjct: 888 RTAGVQPSDMASYMAHFYSYFTSTDPSRMAVGI 920
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
gi|195649373|gb|ACG44154.1| ribonucleoprotein A [Zea mays]
gi|414591006|tpg|DAA41577.1| TPA: ribonucleoprotein A [Zea mays]
Length = 268
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 88/165 (53%), Gaps = 2/165 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP S D ++L +F+ G+V VEV + TG SRG G++TM S A+ A+
Sbjct: 79 LKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSRGFGFVTMSSAEEAEAAVE 138
Query: 160 ALDGSDVGGREMRVRFSID--MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G GR++RV + T A +S +K+YVGNL+W V
Sbjct: 139 QFNGYAFQGRQLRVNCGPPPPRDESTPRAPRGGGGGGGGGFVDSANKVYVGNLAWGVDNS 198
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L N F G V+ A+V++DR +R FGF+++ S E + A+S
Sbjct: 199 TLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAIS 243
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL D S L +F G VL +V + ++G SRG G++T GS NAI
Sbjct: 185 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAQEVNNAISN 244
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 245 LDGIDLDGRQIRV 257
>gi|299470875|emb|CBN78824.1| Protein for assembly of pre-ribosomal particles containing 18S rRNA
[Ectocarpus siliculosus]
Length = 517
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ DD + ++++ ++Y+ LP ++ + FK G +++VE +NP+ G S G
Sbjct: 265 KADDAEEGDAKKAKSENSKIYLRGLPWDTSDDDVKDFFKACGKIVTVEQPKNPD-GRSSG 323
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+T S +A I LDG ++GGR +++ S + RN E + P V+
Sbjct: 324 TAYVTFDSAAAA-AKAIELDGQELGGRWLKIMMSFEKPDHARNGEPKVKPAGCTTVF--- 379
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+GNLSW++ + +R FG G + S R DR+ R FG + F DAA+
Sbjct: 380 ----IGNLSWSIDEDTIRQTFGECGDIKSVRFAEDRETGEFRGFGHVEFYDGEHVDAAMK 435
Query: 263 L 263
L
Sbjct: 436 L 436
>gi|75275079|sp|P82277.1|RRP2_SPIOL RecName: Full=30S ribosomal protein 2, chloroplastic; AltName:
Full=Plastid-specific 30S ribosomal protein 2;
Short=PSRP-2; Flags: Precursor
gi|7578881|gb|AAF64167.1|AF240462_1 plastid-specific ribosomal protein 2 precursor [Spinacia oleracea]
Length = 260
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L
Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145
Query: 162 DGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E
Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNE 198
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN +V
Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 25 KRFGFTSLPTL--INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+RFGF ++ T+ N KL+ G R + + + E + G D +
Sbjct: 125 RRFGFVTMKTVEDANAVIEKLNDT-----EIGGRKI------KVNITEKPLEGMD-IATT 172
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ +D VE P ++Y+ NL ++ L + F G VL +V R P T S G
Sbjct: 173 QAEDSQFVESP------YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNG 226
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G+++ S + AI AL+ S + G+++RV
Sbjct: 227 FGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E +LYVGN+ + ++LR G + A V++D+ +R FGF++ + + +A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 260 AL-SLNGT 266
+ LN T
Sbjct: 141 VIEKLNDT 148
>gi|3550485|emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL F G+V V++ + T SRG ++TM
Sbjct: 97 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 156
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F + A A ++ V + +K+Y
Sbjct: 157 ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYA 216
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
GNL W V+ + L+ F +V ARV+ +R +R FGF+SF + + AAL V
Sbjct: 217 GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Query: 268 E 268
E
Sbjct: 277 E 277
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L F+ ++ V +TG SRG G+++ +I AK A+ A
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LDGSDVGGREMRVRFS 176
+DG ++ GR +R+ +
Sbjct: 273 MDGVELDGRPLRLSLA 288
>gi|326511132|dbj|BAJ87580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL F G+V V++ + T SRG ++TM
Sbjct: 97 PRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFVTM 156
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F + A A ++ V + +K+Y
Sbjct: 157 ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGERAVASAAVARTSLRVVDDGTYKVYA 216
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
GNL W V+ + L+ F +V ARV+ +R +R FGF+SF + + AAL V
Sbjct: 217 GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGV 276
Query: 268 E 268
E
Sbjct: 277 E 277
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L F+ ++ V +TG SRG G+++ +I AK A+ A
Sbjct: 213 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 272
Query: 161 LDGSDVGGREMRVRFS 176
+DG ++ GR +R+ +
Sbjct: 273 MDGVELDGRPLRLSLA 288
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 93/186 (50%), Gaps = 14/186 (7%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S EP A+ ++V NLP D L +F+ G V EV N ET SRG G+++M
Sbjct: 935 SYSEPPEEAK---VFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSM 991
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
++ A+ A+ ++ GR + V + S+ PP+ V+E ++YVG
Sbjct: 992 STVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPER------PPR---VFEPAFRMYVG 1042
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG-T 266
NL W V L F G VV ARV+ DR+ +R FGF++ SS E DA + +G T
Sbjct: 1043 NLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQT 1102
Query: 267 VESHTV 272
++ T+
Sbjct: 1103 LDGRTI 1108
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 49 RSHPAGFRSVLAVVDEEAVV---VEDEINGKDNVGGNEVDDDSSVEEPRSRARPC-ELYV 104
RS GF S+ V + E V E++G+ S E P P +YV
Sbjct: 982 RSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYV 1041
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NLP D + L ++F G V+ V + ETG SRG G++TM S ++AI A DG
Sbjct: 1042 GNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQ 1101
Query: 165 DVGGREMRV 173
+ GR +RV
Sbjct: 1102 TLDGRTIRV 1110
>gi|255075095|ref|XP_002501222.1| predicted protein [Micromonas sp. RCC299]
gi|226516486|gb|ACO62480.1| predicted protein [Micromonas sp. RCC299]
Length = 199
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 87/166 (52%), Gaps = 2/166 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL L ++F +G V V + TG SRG G++T+ A I A
Sbjct: 18 KLYVGNLSWGVTNDSLADVFNQYGAS-DVTVVTDMNTGRSRGFGFVTVPDQAVADACIAA 76
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+DV GR +RV S+ R + ++ K+Y GNLSW + DL+
Sbjct: 77 LDGADVDGRAIRVNVSVAREDRPPRPDRPPRDGQRRGYDFDGRKVYFGNLSWGMDHLDLQ 136
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ G FGTV AR++ DR+ +R FGF++ S+ AE + ++ LNG
Sbjct: 137 DLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQLNG 182
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL D +L ++ FGTV + + ET SRG G++TM ++ A+ +
Sbjct: 120 KVYFGNLSWGMDHLDLQDLCGEFGTVEDARLITDRETNRSRGFGFVTMSTVAEAEEVVNQ 179
Query: 161 LDGSDVGGREMRVRFS 176
L+G DV GR +RV +
Sbjct: 180 LNGQDVDGRVLRVNIA 195
>gi|388508864|gb|AFK42498.1| unknown [Medicago truncatula]
Length = 300
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+S EEP + +++V NLP D +L ++F+ GTV EV N +T SRG G++T
Sbjct: 113 ASFEEP---SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVT 169
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
M + + A+ G ++ GR + V N+ R L P + S + YV
Sbjct: 170 MSTSEEVERAVNKFSGFELDGRLLTVN-----NAAPRGTPRLRQPR----TFNSGLRAYV 220
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
GNL W V L F G V SA+V++DR+ R FGF++ S++AE DA +L+G
Sbjct: 221 GNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMSNEAEMNDAIAALDG 279
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%)
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ +PR+ YV NLP D S L ++F G V S +V + ETG RG G++TM
Sbjct: 206 LRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRLRGFGFVTMS 265
Query: 150 SINSAKNAIIALDGSDVGGREMRV 173
+ +AI ALDG GR +RV
Sbjct: 266 NEAEMNDAIAALDGQSFNGRAIRV 289
>gi|412986787|emb|CCO15213.1| predicted protein [Bathycoccus prasinos]
Length = 260
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S E S +LY+ NL D L ++F + V V+ + TG SRG G
Sbjct: 59 DAESPAAESESSGGEVKLYIGNLSWDMDDQALNDLFSQYQASDCVIVT-DRNTGRSRGFG 117
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
+ T+ S A +AI AL+ SD GR+MRV S+ R A PK+ + + K
Sbjct: 118 FATVPSQEMADSAIAALNDSDQFGRQMRVVISLPPEERP----AREQRPKRNWDADG-RK 172
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSL 263
+Y GNLSW + DL++ FG V +R++ DR+ +R FGF++ SS+ E D L
Sbjct: 173 VYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQL 232
Query: 264 NG 265
NG
Sbjct: 233 NG 234
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL D +L ++ FG V + + ETG SRG G++TM S A++ +
Sbjct: 172 KVYFGNLSWGMDHLDLQDLCAEFGNVDESRLITDRETGRSRGFGFVTMSSEKEAEDVVAQ 231
Query: 161 LDGSDVGGREMRVRFS 176
L+G DV GR +RV +
Sbjct: 232 LNGQDVDGRVLRVNIA 247
>gi|222423445|dbj|BAH19693.1| AT3G52150 [Arabidopsis thaliana]
Length = 253
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 4/186 (2%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVSNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + + L S FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE-DSAFV-DSP 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-L 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA +
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAVV 236
Query: 262 SLNGTV 267
+LN ++
Sbjct: 237 ALNNSL 242
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 36 INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD---------- 85
+ Y K S RS GF ++ +V D AVV +++NG + V G E+
Sbjct: 105 VQVMYDKYSG---RSRRFGFATMKSVEDANAVV--EKLNG-NTVEGREIKVNITEKPIAS 158
Query: 86 -DDSSVEEPRSRA---RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D SV + A P ++YV NL ++ L +F G V+S +VSR P T S
Sbjct: 159 SPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKST 218
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G G++T S + A++AL+ S + G+++RV
Sbjct: 219 GFGFVTFSSEEDVEAAVVALNNSLLEGQKIRV 250
>gi|30693595|ref|NP_566958.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|79314769|ref|NP_001030841.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|17979394|gb|AAL49922.1| unknown protein [Arabidopsis thaliana]
gi|22136722|gb|AAM91680.1| unknown protein [Arabidopsis thaliana]
gi|332645382|gb|AEE78903.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332645383|gb|AEE78904.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 253
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 102/186 (54%), Gaps = 4/186 (2%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V V+V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRR 118
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G+ TM S+ A + L+G+ V GRE++V + + + + L S FV +SP
Sbjct: 119 FGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSE-DSAFV-DSP 176
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+ + +AA+
Sbjct: 177 YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 262 SLNGTV 267
+LN ++
Sbjct: 237 ALNNSL 242
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 36 INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD---------- 85
+ Y K S RS GF ++ +V D AVV +++NG + V G E+
Sbjct: 105 VQVMYDKYSG---RSRRFGFATMKSVEDANAVV--EKLNG-NTVEGREIKVNITEKPIAS 158
Query: 86 -DDSSVEEPRSRA---RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D SV + A P ++YV NL ++ L +F G V+S +VSR P T S
Sbjct: 159 SPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKST 218
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G G++T S + AI+AL+ S + G+++RV
Sbjct: 219 GFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>gi|99029149|gb|ABF60862.1| GRSF [Lilium longiflorum]
Length = 207
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISE-LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+L+V N+P +D SE L +F G V EV N ET SRG G++TM ++ A+ A+
Sbjct: 30 AKLFVGNIP--YDDSEKLANLFDKAGVVEVAEVIYNRETDQSRGFGFVTMSTVEEAERAV 87
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L D+ GR + V + SR P++ + ++YVGNL W V
Sbjct: 88 EMLHRYDINGRNLTVNKAAPRGSR----------PERPRESDPSLRVYVGNLPWQVDDSR 137
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L F G V+ ARV++DR+ +R FGF++ ++ E D A+ +L+G
Sbjct: 138 LEQLFSEHGKVIDARVVYDRQSGRSRGFGFVTLATREEVDDAIAALDG 185
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+ING++ S E PR +YV NLP D S L ++F G V+ V
Sbjct: 94 DINGRNLTVNKAAPRGSRPERPRESDPSLRVYVGNLPWQVDDSRLEQLFSEHGKVIDARV 153
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ ++G SRG G++T+ + +AI ALDG + GR +RV
Sbjct: 154 VYDRQSGRSRGFGFVTLATREEVDDAIAALDGQSLEGRALRV 195
>gi|50409715|ref|XP_456900.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
gi|49652564|emb|CAG84877.1| DEHA2A13134p [Debaryomyces hansenii CBS767]
Length = 447
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 8/179 (4%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
++P++ P L+V L S D L F+P G V+S V TG SRG GY+ S
Sbjct: 189 KKPKTNEEPATLFVGRLSWSIDDEWLRREFEPVGGVISARVIMERSTGKSRGYGYVDFDS 248
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHK-LYV 207
++A+ A+ G ++ GR + ++DM++ +A + K F V +P L+V
Sbjct: 249 KSAAEKALQEYQGKELDGRPI----NLDMSTGKPHASNPNTDRAKQFGDVPSAPSDTLFV 304
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
GNLS+ + + L N FG +GTVVS R+ Q + FG++ FSS E AAL +LNG
Sbjct: 305 GNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 363
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + + L F +GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 302 LFVGNLSFNAERDSLFNTFGEYGTVVSCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 361
Query: 162 DGSDVGGREMRVRFSI 177
+G + GR R+ FS
Sbjct: 362 NGEYLDGRACRLDFST 377
>gi|302758260|ref|XP_002962553.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
gi|300169414|gb|EFJ36016.1| hypothetical protein SELMODRAFT_26412 [Selaginella moellendorffii]
Length = 177
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 22/173 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL + D EL ++ + G + VE V + ETG SRG GY+T+ SI+ A+ A+
Sbjct: 3 IYVGNLSWNCDSEELAKVLQQAGILAHVEEVVCDRETGRSRGFGYVTLTSIDFAQVAVQK 62
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK------IFVYESPHKLYVGNLSWAV 214
LDG V GR ++ +S P KK + V S K+++GNL W V
Sbjct: 63 LDGHIVQGRALKASYS--------------QPYKKAGKEGPVEVAASHTKVFIGNLPWGV 108
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
L F G VV ++++DR +R FGF++ SS E D A+ SL+G
Sbjct: 109 DDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADEAVKSLDGA 161
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A ++++ NLP D L E F+ G V+ V++ + +TG SRG G++T+ S A
Sbjct: 94 ASHTKVFIGNLPWGVDDGSLEEFFRAHGKVVEVKIVYDRDTGRSRGFGFVTLSSPKEADE 153
Query: 157 AIIALDGSDVGGREMRVRFS 176
A+ +LDG+D GR +RV+ +
Sbjct: 154 AVKSLDGADCDGRRLRVKLA 173
>gi|357111564|ref|XP_003557582.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 354
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 5/181 (2%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PR+R P +YV NLP +F +EL +F G+V V++ + T SRG ++TM
Sbjct: 110 PRTRPALGQEPGRIYVGNLPYTFTAAELTSVFSEAGSVDDVQIIYDKITDRSRGFAFVTM 169
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI-FVYESPHKLYV 207
+ A A+ +G+ +GGR +RV F R + + + V + +K+Y
Sbjct: 170 ATAEEAAKAVQMFNGALLGGRTIRVNFPEVPRGGERAVASAAAAKTSLRVVDDGTYKVYA 229
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
GNL W V+ + L+ F ++ +RV+ +R +R FGF+SF + + +AA+ V
Sbjct: 230 GNLGWGVRADALKTAFEGQPGLLGSRVIFERDTGRSRGFGFVSFQTLEDANAAIQAMDGV 289
Query: 268 E 268
E
Sbjct: 290 E 290
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP30; Flags: Precursor
gi|19708|emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
Length = 279
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 5/171 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 ALDGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR +RV NS R + + ++S +++YVGNL+W V
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L F G VV A+V++DR +R FGF+++SS E + A+ SL+G
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ +V + ++G SRG G++T S NAI +L
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 256 DGVDLNGRAIRV 267
>gi|357112177|ref|XP_003557886.1| PREDICTED: ribonucleoprotein At2g37220, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 8/193 (4%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
++V+ D + E + ++V NLP S D ++L +F+ G+V VEV + TG SR
Sbjct: 59 SDVETDDAEESAGEFSEDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSR 118
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G G++TM ++ + A+ L+G + GR ++V + F +S
Sbjct: 119 GFGFVTMSTVEEVEEAVEQLNGYVLDGRTIKVNSGPPPPRDQSSPRGFREQSSGGFRQQS 178
Query: 202 P-------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
+++YVGNLSW V L N F G+V+ ARV++DR+ +R FGF+++ S
Sbjct: 179 SRGPSGGDNRVYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSS 238
Query: 255 AERDAALS-LNGT 266
E + A+S L+GT
Sbjct: 239 EEVEKAVSNLDGT 251
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + D S L +F G+VL V + E+G SRG G++T GS + A+ L
Sbjct: 189 VYVGNLSWNVDDSALANLFNEQGSVLGARVIYDRESGRSRGFGFVTYGSSEEVEKAVSNL 248
Query: 162 DGSDVGGREMRV 173
DG+D+ GR++RV
Sbjct: 249 DGTDLDGRQIRV 260
>gi|348666125|gb|EGZ05953.1| hypothetical protein PHYSODRAFT_348578 [Phytophthora sojae]
Length = 356
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 103/185 (55%), Gaps = 22/185 (11%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRGC 143
DDD +E+ + A C +YV NL S +L + + G V L+ + N G S+GC
Sbjct: 76 DDDVDMEQ--AAAVGCRVYVGNLSWSIKWQDLKDHMQAAGPVELATVLESN---GRSKGC 130
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS-PPKKIFVYESP 202
G +T + +A+NAI L+ +++GGR++ VR R A+ + + PK+ F
Sbjct: 131 GIVTYETEEAAQNAIATLNDTELGGRKIFVR-------EDREAQPVSAVKPKRGF----- 178
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
++YVGNLSW VK ++L++H + GTVV A VL + G+ ++ G + +++ E A++
Sbjct: 179 -RVYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEPNGR-SKGCGLVEYATQEEAAKAIA 236
Query: 263 -LNGT 266
LN T
Sbjct: 237 ELNNT 241
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL + K GTV+ +V P G S+GCG + + A AI L
Sbjct: 180 VYVGNLSWNVKWQELKDHMKKAGTVVHADVLEEP-NGRSKGCGLVEYATQEEAAKAIAEL 238
Query: 162 DGSDVGGREMRVRFSI--DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ +++ GR + VR + S ++ A+ +P +LYVGNL W + L
Sbjct: 239 NNTELEGRLIFVREDREPEGGSISKFAKRAAAPRGS----GEGRQLYVGNLPWETNWQQL 294
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
++ F G V A + G+ +R FG I +++ A+ A+ LNG
Sbjct: 295 KDLFRTVGDVERADIAEYPDGR-SRGFGIIRYTNAADAWQAIERLNG 340
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +LYV NLP + +L ++F+ G V +++ P+ G SRG G + +
Sbjct: 271 PRGSGEGRQLYVGNLPWETNWQQLKDLFRTVGDVERADIAEYPD-GRSRGFGIIRYTNAA 329
Query: 153 SAKNAIIALDGSDVGGREMRVRF 175
A AI L+G ++ GR + VR
Sbjct: 330 DAWQAIERLNGLEIEGRLIEVRL 352
>gi|475720|gb|AAA18380.1| RNA-binding protein 3 [Arabidopsis thaliana]
Length = 162
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+F+ GTV EV N ET SRG G++TM S++ A+ A+ + D+ GR + V +
Sbjct: 2 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 61
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
SR P + VYE ++YVGNL W V L F G VV ARV++DR
Sbjct: 62 RGSR---------PERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 112
Query: 239 KGQTTRVFGFISFSSDAERDAALS 262
+ +R FGF++ S E + A+S
Sbjct: 113 ETGRSRGFGFVTMSDVDELNEAIS 136
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 70 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 129
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 130 ELNEAISALDGQNLEGRAIRV 150
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 12/210 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G + +E +A+ +YV NL + D +L EMF+ FG ++S ++
Sbjct: 164 LNGKKVFVGRFMSRKERLEMLGDKAKKFTNVYVKNLNETMDDKKLREMFEVFGKIISAKM 223
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
N E G RG G+++ +A A+ L+ +V G+E+ V + R +
Sbjct: 224 M-NTEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFE 282
Query: 192 PPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
K +I Y+ + LYV NL + E LR F +FGT+ SARV+ + G T+ FGF+
Sbjct: 283 RMKMERINRYQGVN-LYVKNLDEQIDDERLRKEFSQFGTITSARVMTE--GGRTKGFGFV 339
Query: 250 SFSSDAERDAALS-LNGTVESHTVAFQPLF 278
FSS E A++ +NG + V +PL+
Sbjct: 340 CFSSPEEATKAVTEMNGRI----VVAKPLY 365
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 90 VEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+++P+ + P LYV +L + L E F G VLS+ V R+ T S G Y+
Sbjct: 1 MQQPQGPSYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNF 60
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
A+ A+ ++ + GR +R+ +S R+ S IF+
Sbjct: 61 QQPADAERALDTMNFDAIKGRPIRIMWS------QRDPSLRKSGVGNIFIK--------- 105
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
NL + + L + F FG ++S ++ D+ G +GF+ F + +A R++ +NG +
Sbjct: 106 NLDKNIDNKALYDTFSAFGNILSCKIAMDQNGSLG--YGFVHFETEEAARNSIEKVNGML 163
>gi|225427185|ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
vinifera]
Length = 288
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 95/185 (51%), Gaps = 5/185 (2%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E++ ++ E+ + + +L+V NLP S + ++ +F GTV VE+ + + G SR
Sbjct: 71 QEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-GRSR 129
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++TM S A+ + D ++ GR +RV F+ + + PP E+
Sbjct: 130 GYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFK---KPSPPPPPPPAGPPAGET 186
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
HKLYV NL+W V+ LR F VS RV+ D + +GF SF++ E +AA+
Sbjct: 187 RHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAI 246
Query: 262 S-LNG 265
S L+G
Sbjct: 247 SALDG 251
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L E F +SV V + +G S G G+ + + A+ AI A
Sbjct: 189 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 248
Query: 161 LDGSDVGGREMRVRFSI 177
LDG ++ GR + ++FS+
Sbjct: 249 LDGKELMGRPVHLKFSV 265
>gi|356513816|ref|XP_003525605.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 299
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 84/171 (49%), Gaps = 7/171 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +++V NLP D L +F GTV EV N T SRG G++TM ++ K
Sbjct: 113 KAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELK 172
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ G ++ GR + V N PP+ + S ++YVGNL W V
Sbjct: 173 KAVEMFSGYELNGRVLTV------NKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVD 226
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
L F G V ARV++DR+ +R FGF++ SS+ + DA +L+G
Sbjct: 227 DARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDG 277
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 216 VYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 275
Query: 162 DGSDVGGREMRVRFSIDMNSRT 183
DG + GR +RV + D SR+
Sbjct: 276 DGQSLDGRAIRVNVAQDRPSRS 297
>gi|297742089|emb|CBI33876.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 94/188 (50%), Gaps = 14/188 (7%)
Query: 88 SSVEEPRSRARPCE---------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
SSV+E A+P + L+V NLP S + ++ +F GTV VE+ + + G
Sbjct: 38 SSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQKD-G 96
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG ++TM S A+ + D ++ GR +RV F+ + + PP
Sbjct: 97 RSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFK---KPSPPPPPPPAGPPA 153
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
E+ HKLYV NL+W V+ LR F VS RV+ D + +GF SF++ E +
Sbjct: 154 GETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAE 213
Query: 259 AALS-LNG 265
AA+S L+G
Sbjct: 214 AAISALDG 221
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL + L E F +SV V + +G S G G+ + + A+ AI A
Sbjct: 159 KLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEAAISA 218
Query: 161 LDGSDVGGREMRVRFSI 177
LDG ++ GR + ++FS+
Sbjct: 219 LDGKELMGRPVHLKFSV 235
>gi|363807234|ref|NP_001242356.1| 31 kDa ribonucleoprotein, chloroplastic-like [Glycine max]
gi|255645622|gb|ACU23305.1| unknown [Glycine max]
Length = 300
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG++++D A +++V NLP FD +L +F+ GTV EV N T
Sbjct: 102 GGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDR 161
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM +I + A+ G ++ GR + V A + P++
Sbjct: 162 SRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTV----------NKAAPKGAQPERPPRP 211
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
++YVGNL W V L F G V ARV++DR+ +R FGF++ SS+ + D
Sbjct: 212 PQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMND 271
Query: 259 AALSLNG 265
A +L+G
Sbjct: 272 AIAALDG 278
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D S L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 217 VYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 276
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 277 DGQSLDGRAIRV 288
>gi|193850551|gb|ACF22879.1| RNA-binding protein [Glycine max]
Length = 302
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 92/187 (49%), Gaps = 11/187 (5%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GG++++D A +++V NLP FD +L +F+ GTV EV N T
Sbjct: 104 GGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDR 163
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM +I + A+ G ++ GR + V A + P++
Sbjct: 164 SRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTV----------NKAAPKGAQPERPPRP 213
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
++YVGNL W V L F G V ARV++DR+ +R FGF++ SS+ + D
Sbjct: 214 PQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMND 273
Query: 259 AALSLNG 265
A +L+G
Sbjct: 274 AIAALDG 280
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D S L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 219 VYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 278
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 279 DGQSLDGRAIRV 290
>gi|255636284|gb|ACU18482.1| unknown [Glycine max]
Length = 280
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A +++V NLP D L +F GTV EV N T SRG G++TM ++ K
Sbjct: 113 KAEEDKIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELK 172
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ G ++ GR + V N PP+ + S ++YVGNL W V
Sbjct: 173 KAVEMFSGYELNGRVLTV------NKAAPKGAQPERPPRPPRSFSSGLRVYVGNLPWEVD 226
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L F G V ARV++DR+ +R FGF++ SS+ + + A++
Sbjct: 227 DARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIA 273
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D + L ++F G V V + ETG SRG G++TM S +AI AL
Sbjct: 216 VYVGNLPWEVDDARLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAAL 275
Query: 162 D 162
D
Sbjct: 276 D 276
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K++VGNL + + E+L + FG+ GTV A V+++R +R FGF++ S+ E A+ +
Sbjct: 118 KIFVGNLPFDIDSENLASLFGQAGTVEVAEVIYNRATDRSRGFGFVTMSTLEELKKAVEM 177
>gi|326496905|dbj|BAJ98479.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V N+P +F +E ++F G V VEV + + G RG ++TM + A +
Sbjct: 61 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKD-GRKRGFAFVTMATAEEAAAVVEK 119
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DG D+ GR ++V FS +PP + +KLYV NL+W + DL+
Sbjct: 120 FDGHDINGRVIKVEFSKSFRKP--------APPSSPDTIVAKYKLYVSNLAWKARSADLK 171
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +F V + V DRK +GF+SF + E +AALS LNG
Sbjct: 172 EFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELNG 214
>gi|326503644|dbj|BAJ86328.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 285
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V N+P +F +E ++F G V VEV + + G RG ++TM + A +
Sbjct: 80 KLFVGNMPFTFSAAETEKLFAECGVVKDVEVIKMKD-GRKRGFAFVTMATAEEAAAVVEK 138
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DG D+ GR ++V FS +PP + +KLYV NL+W + DL+
Sbjct: 139 FDGHDINGRVIKVEFSKSFRK--------PAPPSSPDTIVAKYKLYVSNLAWKARSADLK 190
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +F V + V DRK +GF+SF + E +AALS LNG
Sbjct: 191 EFFSQFNPVSANIVFDDRKSAG---YGFVSFGTKEEAEAALSELNG 233
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLLKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 401 ---EMNQRMIQGKPLY 413
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHY 193
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEEFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK +ES LYV NL ++ E
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V V +PL
Sbjct: 303 LRKEFSLYGTITSAKVMTDDEGR-SKGFGFVCFISPNEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDDE-GRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G VG + + V + R
Sbjct: 348 NGRVVGSKPLYVALAQRKEER 368
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 101/182 (55%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +LL +F+ +G + S +V + ++G +RG G+++ +SA+ A+ L
Sbjct: 194 VYIKNFGDELDDDKLLVIFEKYGKITSAKVMTD-DSGKNRGFGFVSFEEPDSAERAVEEL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+GGR + V + R R+ E L +++ Y+ + LYV NL A+ E
Sbjct: 253 NGKDMGGRPLYVGRAQKKAERQSELKRHFEQLKQ--ERLNRYQGVN-LYVKNLDDALDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR FG FG + SA+V+ D G+ ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 310 RLRKEFGPFGNITSAKVMTDANGR-SKGFGFVCFSSPEEATKAVTEMNGRI----VVSKP 364
Query: 277 LF 278
L+
Sbjct: 365 LY 366
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDAIKNKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S RV D + ++ +GF+ F ++ + A+S +NG +
Sbjct: 118 TFSAFGNILSCRVATDEEA-ASKGYGFVHFETEEAANKAISKVNGML 163
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 71 DEINGKDNVGG---------NEVDDDSSV--------EEPRSRARPCELYVCNLPRSFDI 113
+E+NGKD +GG + + S + +E +R + LYV NL + D
Sbjct: 250 EELNGKD-MGGRPLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVKNLDDALDD 308
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
L + F PFG + S +V + G S+G G++ S A A+ ++G V + + V
Sbjct: 309 ERLRKEFGPFGNITSAKVMTD-ANGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYV 367
Query: 174 RFS 176
+
Sbjct: 368 ALA 370
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 96/174 (55%), Gaps = 9/174 (5%)
Query: 93 PRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
P AR LY+ NL D+SE L E F FG ++S+ ++++ G+S+G G++ +
Sbjct: 184 PGPDARYTNLYMKNL--DLDVSEATLQEKFSSFGKIVSLVIAKD-NNGMSKGFGFVNYDN 240
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+ AK A+ A++GS +G + + V + R + +K I Y+ + +YV
Sbjct: 241 PDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSN-IYVK 299
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
N+ V E+LR+HF GT+ SA+++ D KG ++ FGF+ FS+ E + A++
Sbjct: 300 NIDDHVSDEELRDHFSACGTITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVN 352
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 21/193 (10%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
P A P LYV +L S L++ F F ++ SV V ++ TG S GYL S
Sbjct: 4 HPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSP 63
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A AI + S + G+ MRV +S R+ +A S +F V NL
Sbjct: 64 QDAIRAIELKNNSTLNGKAMRVMWS------RRDPDARKSAIGNLF---------VKNLP 108
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270
++ L++ F ++G ++S++V+ G+ ++ +GF+ F S+ A+ LNG +
Sbjct: 109 ESIDNAGLQDIFKKYGNILSSKVVTSEDGK-SKGYGFVQFESEESSKVAIEKLNG----Y 163
Query: 271 TVAFQPLFPFNYV 283
TVA + L+ +V
Sbjct: 164 TVADKELYVGKFV 176
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK +ES LYV NL ++ E
Sbjct: 244 NGKDMGDGKTLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V + +PL
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNGRV----IGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLIRDKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG T++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-TSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G +G + + V + R
Sbjct: 348 NGRVIGSKPLYVALAQRKEER 368
>gi|223942613|gb|ACN25390.1| unknown [Zea mays]
Length = 164
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%)
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
MF GTV EV + T SR G++TM + A A+ AL+G++VG R+++V +
Sbjct: 1 MFAAHGTVERAEVMYDKYTNRSRRFGFVTMSTAEEANAAVEALNGTEVGDRKIKVNVT-- 58
Query: 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238
S N + P+ +FV +S +K+YVGNL+ V E L+N F G ++SA V H
Sbjct: 59 -ESFLPNIDRSAPEPEALFV-DSQYKVYVGNLAKTVTTEVLKNFFSEKGNILSATVSHIP 116
Query: 239 KGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280
++ +GF++FSS+ E +AA++ S + F PF
Sbjct: 117 GTSKSKGYGFVTFSSEEEVEAAVATFNNAVSFSCKFYAFLPF 158
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 103/190 (54%), Gaps = 20/190 (10%)
Query: 98 RPCEL---YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+P E+ YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA
Sbjct: 20 KPIEIASIYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSA 79
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ AI +++ VG + +R+ + + R+ Y ++V NL V
Sbjct: 80 EKAIESMNFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDV 124
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVA 273
+ L + F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG + +
Sbjct: 125 DSKSLHDIFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGAADHASED 183
Query: 274 FQPLFPFNYV 283
+ L+ N++
Sbjct: 184 KKALYVANFI 193
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + +Y+ + V + +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVA---------NFTNVYIKQVLPTVNKDVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
F +FG + SA D+ G RVF F +F + DA ++ + H
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNF--EKHDDAVKAVEAMHDHH 269
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G+SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGVSRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGREMRVRF 175
+ F FG + S ++ + C + A A+ +DG G ++ V+
Sbjct: 225 KFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQ- 283
Query: 176 SIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
++ R +E LI+ +K +++ + LYV N DL F +G V S RV
Sbjct: 284 ----RAQPR-SERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ G +R FGF+SFS+ E +AAL +NG +
Sbjct: 339 MVSESG-VSRGFGFVSFSNADEANAALREMNGRM 371
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDATINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAFQPLFPF 280
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG + + + L+
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVA 190
Query: 281 NYV 283
N++
Sbjct: 191 NFI 193
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + Y+ + V + +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVNKDVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
F +FG + SA D+ G RVF F +F + DA ++ + H
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNF--EKHDDAVKAVEAMHDHH 269
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G+SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGVSRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGREMRVRF 175
+ F FG + S ++ + C + A A+ +DG G ++ V+
Sbjct: 225 KFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEKLYVQ- 283
Query: 176 SIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
++ R +E LI+ +K +++ + LYV N DL F +G V S RV
Sbjct: 284 ----RAQPR-SERLIALRQKYMQHQALGNNLYVRNFDPEFTGADLLELFKEYGEVKSCRV 338
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ G +R FGF+SFS+ E +AAL +NG +
Sbjct: 339 MVSESG-VSRGFGFVSFSNADEANAALREMNGRM 371
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 18/168 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL S D L E F FG VLS +V+ + G S+G G++ + SAKNAI
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIE 171
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDG + +++ V + + R S PK VY V NLS + EDL
Sbjct: 172 KLDGRLMNDKKVYVGYFVRCQER--------SSPKFTNVY-------VKNLSESYTNEDL 216
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
+ F FG + S +++ D G + R FGF++F SSD+ A LNG+
Sbjct: 217 KQLFNTFGVITSVKIMKDENGNSKR-FGFVNFQSSDSAATAVEKLNGS 263
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 95/180 (52%), Gaps = 7/180 (3%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ RS + +YV NL S+ +L ++F FG + SV++ ++ E G S+ G++ S
Sbjct: 192 QERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGVITSVKIMKD-ENGNSKRFGFVNFQSS 250
Query: 152 NSAKNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVG 208
+SA A+ L+GS G+ + V + + R +A +K+ YE LY+
Sbjct: 251 DSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQ-EKLKRYEKFQGANLYLK 309
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
N+ ++ E L+ F FGT+ S +V+ D +G++ V GF++F++ E A+ +NG +
Sbjct: 310 NIDKSLNEEKLKELFSEFGTITSCKVMSDARGRSKGV-GFVAFTTPEEASKAIDEMNGKI 368
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + ++L ++F V+SV V R+ T S G GY+ + A NA+ L
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ FS + + LI K F L++ NL ++ + L
Sbjct: 87 NYVPLNGKPIRIMFS--------HRDPLIR--KTGFA-----NLFIKNLETSIDNKALHE 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAF------ 274
F FG V+S +V D G ++ GF+ F +D + ++A L+G + + +
Sbjct: 132 TFSVFGNVLSCKVAMDSNGH-SKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVR 190
Query: 275 -----QPLFPFNYVLFVSFTYSKPSCR----TFGV 300
P F YV +S +Y+ + TFGV
Sbjct: 191 CQERSSPKFTNVYVKNLSESYTNEDLKQLFNTFGV 225
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 11/199 (5%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
INGK G V VE + ++V NLP + L +MF FG + SV +
Sbjct: 197 INGKQVFVGIFVPRKERVELGEGVTKFTNVFVKNLPEDTTDAALNDMFSKFGKITSVVIM 256
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
++ + S+G G++ + A+ A+ AL+G+++ G+ + V + R EA +
Sbjct: 257 KSSDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAER----EAELKQ 312
Query: 193 PKKIFVYESPHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
E +K LYV NL A+ + +R F FGT+ S +++ D KG+ +R FG
Sbjct: 313 RYDALRLERINKYQGINLYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRDEKGK-SRGFG 371
Query: 248 FISFSSDAERDAALS-LNG 265
FI FSS E A++ +NG
Sbjct: 372 FICFSSAEEATKAVTEMNG 390
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++L E+F G V+S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 47 LYVGDLHPEVTEAQLFEIFNNIGPVVSIRVCRDAITRRSLGYAYVNFHAAVDAERALDTL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S R+ S +F+ NL + + L +
Sbjct: 107 NYSLIRGKPCRIMWS------QRDPAVRKSGLGNVFIK---------NLDKTIDNKALLD 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAFQPLF 278
F FG ++S +V+ D G ++ +GF+ + + +A A +NG V + F +F
Sbjct: 152 TFSAFGNILSCKVVTDENG--SKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIF 207
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D ++ F PFGT+ SV++ R+ E G SRG G++ S A A+ +
Sbjct: 330 LYVKNLDDAIDEDKIRTEFAPFGTITSVKIMRD-EKGKSRGFGFICFSSAEEATKAVTEM 388
Query: 162 DGSDVGG 168
+G + G
Sbjct: 389 NGQTIQG 395
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHDSAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAFQPLFPF 280
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG + + + L+
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVA 190
Query: 281 NYV 283
N++
Sbjct: 191 NFI 193
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVNKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
F +FG + SA D+ G RVF F +F + DA ++ + H
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNF--EKHDDAVKAVEAMHDHH 269
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGEVKSCRVMVS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 114 SELLE-MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGRE 170
E++E F FG + S ++ + C + A A+ +DG G +
Sbjct: 220 KEVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEK 279
Query: 171 MRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTV 229
+ V+ ++ R +E LI+ +K ++S + LYV N DL F +G V
Sbjct: 280 LYVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGEV 333
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
S RV+ G +R FGF+SFS+ E +AAL +NG +
Sbjct: 334 KSCRVMVSESG-ASRGFGFVSFSNADEANAALREMNGRM 371
>gi|357165665|ref|XP_003580455.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 1
[Brachypodium distachyon]
gi|357165668|ref|XP_003580456.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like isoform 2
[Brachypodium distachyon]
Length = 286
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP + E+ ++F G V V+V + + G RG ++TMGS A A+
Sbjct: 82 LYVANLPWTLPAVEIEKLFAECGVVKDVQVIKMKD-GRKRGFAFVTMGSAEEAAAAVEKF 140
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ DV GR ++V FS +T A P IF HKLYV NL+W + D++
Sbjct: 141 NSYDVMGRIIKVEFS-----KTFRKPAPPRIPSTIFAR---HKLYVSNLAWKARSSDIKA 192
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +F + + V D+K +GF+SF + + +AALS LNG
Sbjct: 193 FFSQFNPISANVVFDDKKSAG---YGFVSFQTKEDAEAALSELNG 234
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L + F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEEFDDEKLKDFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK +ES LYV NL ++ E
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V V +PL
Sbjct: 303 LRKEFSLYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRQIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVALDEKG-NSKGYGFVHFETEEAANTSIEKVNGML 154
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G VG + + V + R
Sbjct: 348 NGRVVGSKPLYVALAQRKEER 368
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 99/183 (54%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHESAEKAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFKRVGDKCVRLMW------QQRDP---------ALRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAFQPLFPF 280
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG + + + L+
Sbjct: 132 IFTKFGSILSCKVMQDEEGK-SRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVA 190
Query: 281 NYV 283
N++
Sbjct: 191 NFI 193
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V ++ E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMQD-EEGKSRGYGFVHFKDETSAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVANFTNV---------YIKQVLPTVSKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
F +FG + SA D+ G RVF F +F + DA ++ + H
Sbjct: 225 KFFAKFGGITSAAACKDKSG---RVFAFCNF--EKHDDAVKAVEAMHDHH 269
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMVS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 114 SELLE-MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALDGSDVGGRE 170
E++E F FG + S ++ + C + A A+ +DG G +
Sbjct: 220 KEVIEKFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHIDGITAPGEK 279
Query: 171 MRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTV 229
+ V+ ++ R +E LI+ +K ++S + LYV N DL F +G V
Sbjct: 280 LYVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLELFKEYGDV 333
Query: 230 VSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
S RV+ G +R FGF+SFS+ E +AAL +NG +
Sbjct: 334 KSCRVMVSESG-ASRGFGFVSFSNADEANAALREMNGRM 371
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 401 ---EMNQRMIQGKPLY 413
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHY 193
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + L+V NL S D +L E FKPFGT+ S V + + G S+G G++
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFV 387
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A AI ++ + G+ + V + + R E I
Sbjct: 388 CFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N ++ +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 193 IYIKNFGEDYNDEKLKEVFAAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + R + ++ + LI +I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGKVIYVGRAQKRLERQGELKRKFELIKQ-DRIQRYQGVN-LYVKNLDDSIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D G +R FGF+ FSS E A++ +NG + VA +PL
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GPQSRGFGFVCFSSPEEATKAVTEMNGRI----VATKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYDVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D +G ++ +GF+ F ++ + A+ ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDERG--SKGYGFVHFETEEAANRAIETMNGML 162
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR-------- 94
R GF V E+A DE+NGK+ VG + + E R
Sbjct: 227 RGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQD 286
Query: 95 --SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV-SRNPETGISRGCGYLTMGSI 151
R + LYV NL S D L + F P+GT+ S +V + P+ SRG G++ S
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQ---SRGFGFVCFSSP 343
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 344 EEATKAVTEMNGRIVATKPLYVALA 368
>gi|348680071|gb|EGZ19887.1| hypothetical protein PHYSODRAFT_489640 [Phytophthora sojae]
Length = 536
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 2/169 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LP D L E FK FG + +V + +TG S+G G++T ++A +A+
Sbjct: 12 KVFVAGLPSHVDDDALYEKFKSFGEMHQSKVVYDQKTGRSKGFGFVTFCEYSNALDAVDQ 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHKLYVGNLSWAVKPED 218
L+ S R + VRF N NA + + P K+ E +YVGNL++ + E
Sbjct: 72 LNQSKWDKRTLNVRFLQPKNGSGANAATVSNRPAKVIGPRPEGCTTIYVGNLAYDITEEV 131
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
LR F + G++ + R + + R FG++ F + +AA+ L+G V
Sbjct: 132 LRKVFDKCGSIRAVRFAEHIQTKEFRGFGYVQFHEEGPCEAAVKLDGMV 180
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 88/166 (53%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FGTVLS +V+ + G S+G G++ + SA+ AI L
Sbjct: 135 VFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVD-SNGQSKGYGFVQFENEESAERAISFL 193
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V F + RTR + PK VY V NLS + EDL
Sbjct: 194 DGMCLNDKQVYVGFFVRQQERTRTNGS----PKFTNVY-------VKNLSETITNEDLEK 242
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
FG +GT+ SA V+ D+ G+ +R FGF++F D+ A LNGT
Sbjct: 243 VFGVYGTITSALVMKDQTGK-SRGFGFVNFQDPDSAAAAVEKLNGT 287
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 91 EEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R+ P +YV NL + +L ++F +GT+ S V ++ +TG SRG G++
Sbjct: 213 ERTRTNGSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSALVMKD-QTGKSRGFGFVNF 271
Query: 149 GSINSAKNAIIALDGSDVG-------GR---------EMRVRFSIDMNSRTRNAEALISP 192
+SA A+ L+G+ GR E++ +F + NSR +A
Sbjct: 272 QDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAA--- 328
Query: 193 PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
LY+ NL + L+ F FG++ S +V+ D +G ++ GF++FS
Sbjct: 329 -----------NLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQG-VSKGSGFVAFS 376
Query: 253 SDAERDAALS-LNGTVESHTVAFQPLF 278
+ E AL +NG + + +PL+
Sbjct: 377 TPEEASRALKEMNGKM----IGRKPLY 399
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++ + +L ++F V+SV V R+ S G GY+ + A NA+ AL
Sbjct: 47 LYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKAL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ FS S ++ +++ NL + + L
Sbjct: 107 NFTPLNGKPIRIMFSHRDPSIRKSGYG---------------NVFIKNLDSTLDNKLLHE 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F FGTV+S +V D GQ ++ +GF+ F ++ + A+S
Sbjct: 152 TFAAFGTVLSCKVAVDSNGQ-SKGYGFVQFENEESAERAIS 191
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 17/137 (12%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LY+ NL + + +L E+F FG++ S +V + + G+S+G G++ + A
Sbjct: 324 RLKAANLYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQ-GVSKGSGFVAFSTPEEAS 382
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR----------TRNAEALISPPKKIFVYE----- 200
A+ ++G +G + + V + R R AL P I Y
Sbjct: 383 RALKEMNGKMIGRKPLYVAIAQRKEERKARLQAHFALVRAPGALAPLPSGIPGYNAGAPR 442
Query: 201 -SPHKLYVGNLSWAVKP 216
+P +LY G + + P
Sbjct: 443 LAPQQLYFGQGTPGMMP 459
>gi|357162700|ref|XP_003579494.1| PREDICTED: uncharacterized protein LOC100845138 [Brachypodium
distachyon]
Length = 929
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 8/169 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S +L+E+F PFG ++ +V+ TG+S+G G++ +SA AI +
Sbjct: 206 LYVGNLPASVGSHKLIELFLPFGRIVRSKVADECFTGLSKGYGFVKYDDPHSATAAINRM 265
Query: 162 DGSDVGGREMRVRFS----IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G V G+ + VR + N ++ S P + S LYV NLS ++ E
Sbjct: 266 NGRLVDGKILEVRVAGVPPSGSNPSIQSVSETYSQPSEEIDMSS---LYVRNLSLSMTKE 322
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
+L HF FG ++ A+V D + +GF+ +S+ E +A + LNG
Sbjct: 323 ELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNSHEAANAIIHLNG 371
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 2/173 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+P LYV NL S ELL+ F PFG ++ +V R+ TG+++G G++ +
Sbjct: 300 QPSEEIDMSSLYVRNLSLSMTKEELLQHFLPFGKIIDAKVPRDYATGLNKGYGFVRYSNS 359
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A NAII L+G V G++M VR S ++ N+ ++ LYV N+
Sbjct: 360 HEAANAIIHLNGHLVEGKKMEVRVS-GVSPALSNSAVESHTDARLIKEIDMANLYVCNIP 418
Query: 212 WAVKPEDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALSL 263
++ + L F FG + ARV H +GF+ F+ A++L
Sbjct: 419 TSIDTKKLIEIFLPFGKITHARVAAHQGTYSGKGRYGFVKFADSQCAAEAITL 471
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 22/213 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V +P + + +L+E+F+PFG ++ V V ++ +G G SA AI +
Sbjct: 607 VFVGRIPSTVNGDQLVELFRPFGQIVQVRVFQH------QGYGMFRFNDPFSAAAAIDHM 660
Query: 162 DGSDVGGREMRVRFSI-----DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +GG + VR + D ++ T + + + P LYV +L +
Sbjct: 661 NGYQIGGSALVVRVAGLPNPGDFSAATDDLK--LQMPGNEGRQIDMANLYVCHLPLYITT 718
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG------TVES 269
E L F G + ARV+ DR ++ FGF+ F+ AL+ +NG +E
Sbjct: 719 EKLIEIFLPCGQITQARVVTDRYTGISKGFGFVRFADTYSAAVALTHMNGYPLEGHILEV 778
Query: 270 HTVAFQPLFPFNYV--LFVSFTYSKPSCRTFGV 300
P +Y+ L+ FTY PS G+
Sbjct: 779 RIAGVHPSDMGSYMTQLYSQFTYPDPSTMVVGI 811
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 86 DDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
DD ++ P + R + LYVC+LP +L+E+F P G + V + TGIS+G
Sbjct: 688 DDLKLQMPGNEGRQIDMANLYVCHLPLYITTEKLIEIFLPCGQITQARVVTDRYTGISKG 747
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
G++ SA A+ ++G + G + VR +
Sbjct: 748 FGFVRFADTYSAAVALTHMNGYPLEGHILEVRIA 781
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLPRS + ++++F PFG + +V N E + + + SA AI +
Sbjct: 513 IYITNLPRSTNADMMVKLFVPFGQI--SKVVMNLEYSL------VYYADVASAVKAIKHM 564
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG +GG+ + VR S + + S K++ + + ++VG + V + L
Sbjct: 565 DGYMIGGKRLVVRRSDSCPTDAAGHTSTQSLGKEVKEIDMAN-VFVGRIPSTVNGDQLVE 623
Query: 222 HFGRFGTVVSARVLHDR 238
F FG +V RV +
Sbjct: 624 LFRPFGQIVQVRVFQHQ 640
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 100/183 (54%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + + +L+E+FKPFGT+L+V V R+ T S G GY+ + +SA+ AI ++
Sbjct: 27 IYVGDLDAAINEPQLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFDNHHSAERAIESM 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V + L +
Sbjct: 87 NFRRVGDKCVRLMW------QQRDPS---------LRYSGNGNVFVKNLEKDVDSKSLHD 131
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAFQPLFPF 280
F +FG+++S +V+ D +G+ +R +GF+ F + + +DA + +NG + + + L+
Sbjct: 132 IFTKFGSILSCKVMEDEEGK-SRGYGFVHFKDEISAKDAIVKMNGAADHASEDKKALYVA 190
Query: 281 NYV 283
N++
Sbjct: 191 NFI 193
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D L ++F FG++LS +V + E G SRG G++ SAK+AI+ +
Sbjct: 115 VFVKNLEKDVDSKSLHDIFTKFGSILSCKVMED-EEGKSRGYGFVHFKDEISAKDAIVKM 173
Query: 162 DGS-DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G+ D + + + + R AL++ + +Y+ + V E +
Sbjct: 174 NGAADHASEDKKALYVANFIRRNARLAALVA---------NFTNVYIKQVLPTVNKEVIE 224
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
N F +FG + SA D+ G RVF F +F + DA ++ + H
Sbjct: 225 NFFAKFGGITSAAACKDKSG---RVFAFCNF--EKHDDAVKAVEAMHDHH 269
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F ++LLE+FK +G V S V + E+G SRG G+++ + + A A+ +
Sbjct: 309 LYVRNFDPEFTGADLLELFKEYGDVKSCRVMMS-ESGASRGFGFVSFSNADEANAALREM 367
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 368 NGRMLNGKPLIVNIAQRRDQR 388
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 39/227 (17%)
Query: 67 VVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPR-------------SFDI 113
V +DEI+ KD + D + E+ ++ LYV N R + I
Sbjct: 158 VHFKDEISAKDAIVKMNGAADHASEDKKA------LYVANFIRRNARLAALVANFTNVYI 211
Query: 114 SELL---------EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII--ALD 162
++L F FG + S ++ + C + A A+ +D
Sbjct: 212 KQVLPTVNKEVIENFFAKFGGITSAAACKDKSGRVFAFCNFEKHDDAVKAVEAMHDHHID 271
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRN 221
G G ++ V+ ++ R +E LI+ +K ++S + LYV N DL
Sbjct: 272 GITAPGEKLYVQ-----RAQPR-SERLIALRQKYMQHQSLGNNLYVRNFDPEFTGADLLE 325
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F +G V S RV+ G +R FGF+SFS+ E +AAL +NG +
Sbjct: 326 LFKEYGDVKSCRVMMSESG-ASRGFGFVSFSNADEANAALREMNGRM 371
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S+D LLE F+ FG V+S +V + TG+S+ G+++ + A+ A+ +
Sbjct: 184 LFVKNLPDSWDTDALLENFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ G+++ + R+ +A K +I Y+ + LYV NL ++ E L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN-LYVKNLDDSIDDEGL 302
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F +FG + SA+V+ D G+ ++ FGF+ FSS E A++ +NG +
Sbjct: 303 REAFKQFGNITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRI 350
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F+ G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ + +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------------NVFIKNLDRSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V+ D G ++ FGF+ + SD A+ +NG + F
Sbjct: 109 TFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVF 160
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D L E FK FG + S +V + G S+G G++ S
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSS 335
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G GG+ + V
Sbjct: 336 PEEATKAVTEMNGRIFGGKPLYV 358
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI L
Sbjct: 563 VFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIKRL 621
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R + PK VY V NLS +DL+N
Sbjct: 622 NGMLINDKQVYVGLFVRHQERNRGNGS----PKFTNVY-------VKNLSETTTDDDLKN 670
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG
Sbjct: 671 IFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNG 714
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 17/178 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+ L
Sbjct: 475 LYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEHL 534
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ FS S ++ A +++ NL ++ + L +
Sbjct: 535 NFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKALLD 579
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAFQPLF 278
F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + + LF
Sbjct: 580 TFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLF 636
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 654 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 712
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 713 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGTNLYLKNLDDS 766
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
V E L+ F FGT+ S +V+ D +G ++ GF++F + E AL+ +NG + +
Sbjct: 767 VNDEKLKELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKM----I 821
Query: 273 AFQPLF 278
+PL+
Sbjct: 822 GRKPLY 827
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L E+F FGT+ S +V +P+ G+S+G G++ + A A+ +
Sbjct: 758 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQ-GLSKGSGFVAFLTPEEATRALNVM 816
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA 188
+G +G + + V + R +A
Sbjct: 817 NGKMIGRKPLYVAVAQRKEERKARLQA 843
>gi|452823093|gb|EME30106.1| RNA-binding protein [Galdieria sulphuraria]
Length = 477
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
PC++++ LP + +L + +P+GTVL + RN T SRGCG+ + A NAI
Sbjct: 39 PCKIFIGQLPSNVVEEDLRRICEPYGTVLETTIVRNRMTNQSRGCGFCVFHNREEADNAI 98
Query: 159 IALDGSD---VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AL G+ G + ++VR + +N++ S KLY+G+L V+
Sbjct: 99 QALHGTKPFPSGSKPLQVRLA------EKNSDF------------SETKLYIGHLEPIVE 140
Query: 216 PEDLRNHFGRFGTVVSARVLH----DRKGQTTRVFGFISFSSDAERDAAL--SLNGTV 267
+ LRN F +FG +V ++ D + + +GF+ FS + D A+ + NG V
Sbjct: 141 EQQLRNAFTKFGEIVDVNIVRPRNVDNQHNSPYNYGFVEFSGNEAADNAILSAKNGQV 198
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 89 SVEEPRSRAR---PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
S E ++R R C L+V +P +D + L +F PFG +LS V + T S+G G+
Sbjct: 377 SFETQQNRVRGPSECNLFVYGIPPDWDDAMLANLFLPFGKLLSSNVFIDKRTQRSKGFGF 436
Query: 146 LTMGSINSAKNAIIALDGSDV-GGREMRVRFSIDMN 180
++ +SA AI L+G + GR ++V + N
Sbjct: 437 VSYAYPDSAHMAIAMLNGMTLPNGRTLKVSLKKEKN 472
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ N A+ P +SP K+++G L V EDLR +GTV+ ++ +R
Sbjct: 20 SSNYHAMTQSPSTRLFKDSPCKIFIGQLPSNVVEEDLRRICEPYGTVLETTIVRNRMTNQ 79
Query: 243 TRVFGFISFSSDAERDAAL-SLNGT 266
+R GF F + E D A+ +L+GT
Sbjct: 80 SRGCGFCVFHNREEADNAIQALHGT 104
>gi|15226983|ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
gi|3608147|gb|AAC36180.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|14596023|gb|AAK68739.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|23198314|gb|AAN15684.1| putative chloroplast RNA binding protein precursor [Arabidopsis
thaliana]
gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
thaliana]
Length = 308
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 100/194 (51%), Gaps = 10/194 (5%)
Query: 76 KDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
K+ E + EE ++ +L+V NLP S ++++ E+F GTV +VE+ R
Sbjct: 71 KETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK 130
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPK 194
+ G +RG ++TM S A+ AI D V GR + V F+ T ++ L SP
Sbjct: 131 D-GKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAP 189
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFS 252
++ HKLYV NL+W + LR F F V + V D +G+++ +GF+SF+
Sbjct: 190 G----DTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSG-YGFVSFA 244
Query: 253 SDAERDAALS-LNG 265
+ E + A++ LNG
Sbjct: 245 TREEAENAITKLNG 258
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+LYV NL + L E+F F V + V +PE G S G G+++ + A+NAI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPE-GRSSGYGFVSFATREEAENAI 253
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
L+G ++ GR + ++FS+ S + + +++
Sbjct: 254 TKLNGKEIMGRPITLKFSLRSASESEDGDSV 284
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI
Sbjct: 101 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIK 159
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R R + PK VY V NLS +DL
Sbjct: 160 RLNGMLINDKQVYVGLFVRHQERNRGNGS----PKFTNVY-------VKNLSETTTDDDL 208
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
+N FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG
Sbjct: 209 KNIFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNGA 255
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+
Sbjct: 13 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 72
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +R+ FS S ++ A +++ NL ++ + L
Sbjct: 73 HLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKAL 117
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAFQPLF 278
+ F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + + LF
Sbjct: 118 LDTFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLF 176
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 194 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 253 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGTNLYLKNLDDS 306
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
V E L+ F FGT+ S +V+ D +G ++ GF++F + E AL+ +NG + +
Sbjct: 307 VNDEKLKELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKM----I 361
Query: 273 AFQPLF 278
+PL+
Sbjct: 362 GRKPLY 367
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L E+F FGT+ S +V +P+ G+S+G G++ + A A+ +
Sbjct: 298 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQ-GLSKGSGFVAFLTPEEATRALNVM 356
Query: 162 DGSDVGGREMRV 173
+G +G + + V
Sbjct: 357 NGKMIGRKPLYV 368
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 191 VYIKNFGEDYTDEKLKEVFSAFGRTLSVRVMKD-ERGRSRGFGFVNFAHHGDAQKAVDEM 249
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+++ G+ + R + ++ + LI +I Y+ + LYV NL + E
Sbjct: 250 NGTELNGKVIYVGRAQKRLERQGELKRKFELIKQ-DRIQRYQGVN-LYVKNLDDGIDDER 307
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D G +R FGF+ FSS E A++ +NG + VA +PL
Sbjct: 308 LRKEFAPYGTITSAKVMTD--GPQSRGFGFVCFSSPEEATKAVTEMNGRI----VATKPL 361
Query: 278 F 278
+
Sbjct: 362 Y 362
>gi|222837999|gb|EEE76364.1| predicted protein [Populus trichocarpa]
Length = 121
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F FG V S +V +TG S+G G++ MGS A+ AI L G + GGR++ V + M
Sbjct: 1 FSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNEARPM 60
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
R E L+ +KLYVGNL + V+ DL F +FG V SARV+ +R
Sbjct: 61 EPRAPLEEFLMG-----------NKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERD 109
Query: 240 GQTTRVFGFISF 251
++ FGF+
Sbjct: 110 TGRSKGFGFVEM 121
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCE-------LYVCN 106
GF V D EA ++G++ G + V +++ EPR+ P E LYV N
Sbjct: 23 GFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNEARPMEPRA---PLEEFLMGNKLYVGN 79
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
LP ++L + F FG V S V +TG S+G G++ M
Sbjct: 80 LPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEM 121
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L E+F FG +LSV+V R+ +G SRG G++ + A+ A++ +
Sbjct: 193 IYVKNLQADVDEQGLQELFSQFGKMLSVKVMRD-SSGHSRGFGFVNFETHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRMNRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEASIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQHAINTMNGML 162
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 18/151 (11%)
Query: 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVG--------------GNEVDD--DSSVE 91
S H GF V EEA +NGK+ G NE+ + +
Sbjct: 226 SSGHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ 285
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+ +R + LYV NL S D +L + F P+G + S +V E G S+G G++ S
Sbjct: 286 DRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMT--EGGHSKGFGFVCFSSP 343
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 344 EEATKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 119/240 (49%), Gaps = 17/240 (7%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEING-----KDNVGGNEVDDDSSVEEPRSRARP-CEL 102
+ H G+ V +E A D++NG K G + +E +A+ +
Sbjct: 126 KGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNV 185
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
Y+ N FD +L E F+P+G + S +V + + G S+G G++ + +A+ A+ AL+
Sbjct: 186 YIKNFTDEFDDEKLKENFEPYGKITSYKVM-SKDDGKSKGFGFVAYETTEAAEAAVQALN 244
Query: 163 GSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
G D+G G+ + V + R + + KK +ES LYV NL ++ E L
Sbjct: 245 GKDMGEGKTLYVARAQKKAERQQELKRKFEELKKK-RHESVFGVNLYVKNLDDSIDDERL 303
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V V +PL+
Sbjct: 304 RKEFSLYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNGRV----VGSKPLY 358
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKGH-SKGYGFVHFETEEAANTSIDKVNGML 154
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLRKEFSLYGTITSAKVMTDEE-GRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G VG + + V + R
Sbjct: 348 NGRVVGSKPLYVALAQRKEER 368
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 87/166 (52%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S D L E+F FGTVLS +V+ E G S+G G++ S +SA +AI L
Sbjct: 103 VYVKNLSESIDNVGLQELFGEFGTVLSCKVA-TFEDGKSKGHGFVQFESEDSANSAIEKL 161
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS VG +++ V + + R L SP K LYV NL + E L+
Sbjct: 162 NGSIVGDKQIYVGKFVKKSDRV-----LPSPDAKYT------NLYVKNLDPGITEELLQE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
F FG +VS + D G ++R FGF++F + D R A +NGT
Sbjct: 211 KFSEFGKIVSVAIARDECG-SSRGFGFVNFENPDDARWAMERMNGT 255
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 96/187 (51%), Gaps = 6/187 (3%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LYV NL L E F FG ++SV ++R+ E G SRG G++ + +
Sbjct: 185 PSPDAKYTNLYVKNLDPGITEELLQEKFSEFGKIVSVAIARD-ECGSSRGFGFVNFENPD 243
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLS 211
A+ A+ ++G+++G + + V + R + +K + + +YV N+
Sbjct: 244 DARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNID 303
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHT 271
V E+LR HF + GT+ SA+++ D KG+ ++ FGF+ FSS E A++ T +
Sbjct: 304 DDVTDEELREHFSQCGTITSAKLMKDDKGR-SKGFGFVCFSSSEEASKAVN---TFHGYM 359
Query: 272 VAFQPLF 278
+PL+
Sbjct: 360 FHRKPLY 366
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L +L++ F F T+ SV V R+ TG S GY+ S A AI
Sbjct: 15 LYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFISPEDAIRAIETK 74
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ MRV +S RN +YV NLS ++ L+
Sbjct: 75 NHTPLNGKLMRVMWSHRDPDARRNGIG---------------NVYVKNLSESIDNVGLQE 119
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
FG FGTV+S +V G+ ++ GF+ F S+ ++A+ LNG++
Sbjct: 120 LFGEFGTVLSCKVATFEDGK-SKGHGFVQFESEDSANSAIEKLNGSI 165
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 95/174 (54%), Gaps = 9/174 (5%)
Query: 93 PRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
P AR LY+ NL D+SE L E F FG ++S+ ++++ G+S+G G++ +
Sbjct: 184 PGPDARYTNLYMKNL--DLDVSEATLQEKFSSFGKIVSLVIAKD-NIGMSKGFGFVNYDN 240
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+ AK A+ A++GS +G + + V + R + +K I Y+ + +YV
Sbjct: 241 PDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSN-IYVK 299
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
N+ V E+LR+HF G + SA+++ D KG ++ FGF+ FS+ E + A++
Sbjct: 300 NIDDHVSDEELRDHFSACGIITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVN 352
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 18/168 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S D + L +MFK +G +LS +V + E G S+G G++ S S+ AI L
Sbjct: 102 LFVKNLPESIDNAGLQDMFKKYGNILSSKVVMS-EDGKSKGYGFVQFESEESSNVAIEKL 160
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+GS VG +++ V +F + ++ ++ P + LY+ NL V L+
Sbjct: 161 NGSTVGDKQLYVGKF-------VKKSDRILPGPDARYT-----NLYMKNLDLDVSEATLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGT 266
F FG +VS + D G ++ FGF+++ + DA+R A ++NG+
Sbjct: 209 EKFSSFGKIVSLVIAKDNIG-MSKGFGFVNYDNPDDAKR-AMEAMNGS 254
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 91/192 (47%), Gaps = 21/192 (10%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A P LYV +L + + L++ F F ++ SV V ++ TG S GY+ S
Sbjct: 5 PSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQ 64
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A AI + S + G+ MRV +S +NA L+V NL
Sbjct: 65 DAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIG---------------NLFVKNLPE 109
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHT 271
++ L++ F ++G ++S++V+ G+ ++ +GF+ F S+ + A+ LNG+ T
Sbjct: 110 SIDNAGLQDMFKKYGNILSSKVVMSEDGK-SKGYGFVQFESEESSNVAIEKLNGS----T 164
Query: 272 VAFQPLFPFNYV 283
V + L+ +V
Sbjct: 165 VGDKQLYVGKFV 176
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 99/182 (54%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D ++ E+F PFG ++S +V + E G SRG G+++ +A+ A+ L
Sbjct: 193 VYIKNFGDELDDDKIRELFDPFGKIISAKVMTD-EIGKSRGFGFVSYEEPEAAEKAVDNL 251
Query: 162 DGSDVGGREM----RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++GG ++ R + + + ++ I ++I Y+ + LYV NL V E
Sbjct: 252 NGMELGGGKVLYAGRAQKKAERQAELKDKFEKIKM-ERINRYQGVN-LYVKNLDDVVDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +FGT+ SARV+ + G ++ FGF+ FSS E A++ +NG + + +P
Sbjct: 310 RLRKEFSQFGTITSARVMSE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----IVSKP 363
Query: 277 LF 278
L+
Sbjct: 364 LY 365
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ + E G S+G G++ + +A+ AI +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKIASD-ENG-SKGYGFVHFETEEAARQAIEKV 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R AL+ K F + +Y+ N + + +R
Sbjct: 159 NGMLLNGKKVYVGKFIPRKERI----ALLGDKMKRF-----NNVYIKNFGDELDDDKIRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG ++SA+V+ D G+ +R FGF+S+ +A A +LNG
Sbjct: 210 LFDPFGKIISAKVMTDEIGK-SRGFGFVSYEEPEAAEKAVDNLNG 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S S ++ +++ NL ++ + L
Sbjct: 71 TMNFDTIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ F FG ++S ++ D G ++ +GF+ F + +A R A +NG +
Sbjct: 116 YDTFSAFGNILSCKIASDENG--SKGYGFVHFETEEAARQAIEKVNGML 162
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 91/165 (55%), Gaps = 15/165 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G SRG G++ + +A+NAI L
Sbjct: 127 IFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-SSGQSRGYGFVQFDNEEAAQNAIDKL 185
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + + R S K F + +YV NLS + EDL+N
Sbjct: 186 NGMLLNDKQVYVGHFLRKHERD-------SASNKKF-----NNVYVKNLSESTTEEDLKN 233
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG +G + SA ++ D G+ ++ FGF++F ++DA A SLNG
Sbjct: 234 IFGEYGEITSAVIMRDADGK-SKCFGFVNFENTDAAAKAVESLNG 277
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F +G + S + R+ + G S+ G++ + ++A A+ +L
Sbjct: 217 VYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDAD-GKSKCFGFVNFENTDAAAKAVESL 275
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G + +E V + + R ++ K V Y+ + LY+ NL ++ E+L
Sbjct: 276 NGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVN-LYIKNLDDSISDENL 334
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F FG + S +V+ D G +R GF++FS+ E AL+ +NG + V +PL+
Sbjct: 335 KELFSDFGMITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALAEMNGKM----VVSKPLY 389
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S L E+F FG + S +V R+P +GISRG G++
Sbjct: 305 EQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFGMITSCKVMRDP-SGISRGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 364 AFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 408
Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L V L + F + G VVS RV D + + +G+++++S +DAA
Sbjct: 36 PTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTS--PQDAAR 93
Query: 262 SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+L+ + F P N + + +++ PS R G G
Sbjct: 94 ALD------ILNFTPF--NNKPIRIMYSHRDPSIRKSGTG 125
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 91/185 (49%), Gaps = 11/185 (5%)
Query: 87 DSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D + EEP + + E ++V NL + D L F GTV S + + ETG ++
Sbjct: 165 DEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAK 224
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G GY+T S + A A +AL G+++ GRE+RV S R N + P+
Sbjct: 225 GFGYVTFESAD-ALTAAMALTGTELDGREIRVDVSTPKPPRDGNRQGRKEAPQSA----P 279
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAA 260
L++GNLS+ V +++R F ++G +VS R DR + FG++ + + + A
Sbjct: 280 TTTLFLGNLSFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEYGDVETAQKAV 339
Query: 261 LSLNG 265
LNG
Sbjct: 340 EGLNG 344
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 180 NSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
S+ R+A+ P K E P ++VGNLSW V E L F GTV SAR++ D
Sbjct: 158 KSKKRSADEAAEEPTKKPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITD 217
Query: 238 RKGQTTRVFGFISFSSDAERDAALSLNGT 266
++ + FG+++F S AA++L GT
Sbjct: 218 KETGRAKGFGYVTFESADALTAAMALTGT 246
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E P+S A L++ NL SF+++E + E F +G ++SV + +TG +G GY+
Sbjct: 273 EAPQS-APTTTLFLGNL--SFNVTEDEIRESFSQYGQLVSVRFPTDRDTGAFKGFGYVEY 329
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFS 176
G + +A+ A+ L+G ++ GR +R+ ++
Sbjct: 330 GDVETAQKAVEGLNGVEIAGRSLRLDYA 357
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 18/195 (9%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E RAR E +YV NL D L ++F FG +LSV+V ++ G SRG G++
Sbjct: 180 EAELRARAMEFTNIYVKNLQVDMDEQGLQDLFSQFGKLLSVKVMKD-NNGHSRGFGFVNF 238
Query: 149 GSINSAKNAIIALDGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHK 204
A+ A++ ++G +V GR++ R + ++ N R E + ++ Y+ +
Sbjct: 239 EKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQMKQ--DRLNRYQGVN- 295
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL ++ E LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 354 NGRI----IGTKPLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYEKFLPAGPILSIRVCRDVATRRSLRYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAISTMNGML 162
>gi|308807591|ref|XP_003081106.1| Ps16 protein (ISS) [Ostreococcus tauri]
gi|116059568|emb|CAL55275.1| Ps16 protein (ISS) [Ostreococcus tauri]
Length = 1094
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 3/165 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL L E+F F V V ++ ETG SRG +++M + + A AL
Sbjct: 916 VYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVERASAAL 974
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G +V GRE+RV + R + + E ++Y GNLSW + DL++
Sbjct: 975 NGREVDGRELRVSKAQAQAERGERPMRMPRQRRDFDQAEG-RRVYFGNLSWGMDQYDLQD 1033
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
FG+V +R++ DR +R FGF++ S+ E D ++ LNG
Sbjct: 1034 LCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQLNG 1078
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAA 260
H++YVGNLSW V E L F F V A V+ DR+ +R F F+S ++ D ER A+
Sbjct: 914 HRVYVGNLSWGVTDESLAELFSEF-DVRDASVMKDRETGRSRGFAFVSMNNEEDVER-AS 971
Query: 261 LSLNG 265
+LNG
Sbjct: 972 AALNG 976
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y NL D +L ++ FG+V + + +TG SRG G++TM + A + L
Sbjct: 1017 VYFGNLSWGMDQYDLQDLCSEFGSVEDSRLITDRDTGRSRGFGFVTMSNTTEADEVVAQL 1076
Query: 162 DGSDVGGREMRVRFS 176
+G DV GR +RV +
Sbjct: 1077 NGQDVDGRVLRVNIA 1091
>gi|388521331|gb|AFK48727.1| unknown [Lotus japonicus]
Length = 285
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 9/167 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +++ ++F GTV VE+ R + G +G ++TM S A+ A+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + R + P E+ H +Y NL+W V+ LR
Sbjct: 146 FDTLELSGRILRVELA------KRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F F +SAR++ D T +GFIS+ + E +AA+S L+G
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDG 246
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KLYV NL W++ D+++ FG+ GTV ++ + G+ + + F++ +S E AA+
Sbjct: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAVDK 145
Query: 264 NGTVE 268
T+E
Sbjct: 146 FDTLE 150
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 12/172 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL L E F FG + S+ +SR+ E G+SRG G++ + + AK A+ L
Sbjct: 195 LYVKNLDPEIGEEHLQEKFSEFGKISSMIISRD-ENGVSRGFGFINFENSDDAKRALETL 253
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISP-----PKKIFVYESPHKLYVGNLSWAVKP 216
+GS +G + V + +T E L +++ Y+ + +YV N+ V
Sbjct: 254 NGSQLGSK---VIYIARAQKKTEREEVLRRHYEEKCKEQVLKYKGSN-VYVKNIDDDVTD 309
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
E+LR F +FGT+ S++++ D KG + FGF+ FS+ D + A +L G +
Sbjct: 310 EELRERFSQFGTITSSKLMRDDKG-INKGFGFVCFSNPDEAKRAVNTLQGCM 360
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 92/179 (51%), Gaps = 17/179 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V +P + A P LYV +L +L + F F ++ SV + R+ TG S GY+
Sbjct: 2 AAVSQPTAHASPASLYVGDLHPDVTDGQLFDAFSGFKSLASVRICRDSSTGRSLSYGYVN 61
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S A NAI ++ S + GR +RV +S R+A+A S +FV
Sbjct: 62 FISPQDATNAIEVMNHSMLNGRAIRVMWS------RRDADARKSGIGNVFVK-------- 107
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
NLS ++ L+ F +FG V+S++V G+ ++ +GF+ F S+ +AA+ SLNG
Sbjct: 108 -NLSDSINSLGLQELFKKFGNVLSSKVATSDDGK-SKGYGFVQFESEESANAAIESLNG 164
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 16/167 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S + L E+FK FG VLS +V+ + + G S+G G++ S SA AI +L
Sbjct: 104 VFVKNLSDSINSLGLQELFKKFGNVLSSKVATS-DDGKSKGYGFVQFESEESANAAIESL 162
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G VG +++ V +F R ++ +++ P + LYV NL + E L+
Sbjct: 163 NGFTVGDKQIYVGKF-------VRKSDRVLANPDIKYT-----NLYVKNLDPEIGEEHLQ 210
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
F FG + S + D G +R FGFI+F +SD + A +LNG+
Sbjct: 211 EKFSEFGKISSMIISRDENG-VSRGFGFINFENSDDAKRALETLNGS 256
>gi|297823333|ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
gi|297325388|gb|EFH55808.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
lyrata]
Length = 308
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 117/244 (47%), Gaps = 30/244 (12%)
Query: 33 PTLINFQYP-KLSSCWS-RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV 90
PT ++ + P LS +S RS R +++V+ V E E + ++ E +
Sbjct: 34 PTALSLRLPSNLSPVFSLRSGGDNSRRLVSVL---CSVAEKETSAEE-----ETSQEEKT 85
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + +L+V NLP S ++++ E+F GTV +VE+ R + G +RG ++TM S
Sbjct: 86 EETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMAS 144
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY------ESPHK 204
A+ AI D S V GR + V F+ T PK ++ HK
Sbjct: 145 GEEAQAAIDKFDTSQVSGRIISVNFARRFKKPT---------PKPPNDLPSPPPGDTRHK 195
Query: 205 LYVGNLSWAVKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAAL 261
LYV NL+W + LR F F V + V D +G+++ +GF+SF++ E DA
Sbjct: 196 LYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSG-YGFVSFATREEAEDAIA 254
Query: 262 SLNG 265
L+G
Sbjct: 255 KLDG 258
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+LYV NL + L E+F F V + V +PE G S G G+++ + A++AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPE-GRSSGYGFVSFATREEAEDAI 253
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
LDG ++ GR + ++FS+ S + + + +
Sbjct: 254 AKLDGKEIMGRPIILKFSLRSASESEDGDTV 284
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 94/169 (55%), Gaps = 5/169 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S+D LL+ F+ FG V+S +V + TG+S+ G+++ + A+ A+ +
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ G+++ + R+ +A K +I Y+ + LYV NL ++ E L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN-LYVKNLDDSIDDEGL 302
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F +FG + SA+V+ D G+ ++ FGF+ FSS E A++ +NG +
Sbjct: 303 REAFKQFGNITSAKVITDLNGR-SKGFGFVCFSSPEEATKAVTEMNGRI 350
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F+ G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ + +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------------NVFIKNLDRSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V+ D G ++ FGF+ + SD A+ +NG + F
Sbjct: 109 TFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVF 160
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D L E FK FG + S +V + G S+G G++ S
Sbjct: 277 QERIQRYQGVNLYVKNLDDSIDDEGLREAFKQFGNITSAKVITDL-NGRSKGFGFVCFSS 335
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G GG+ + V
Sbjct: 336 PEEATKAVTEMNGRIFGGKPLYV 358
>gi|302754352|ref|XP_002960600.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
gi|302771648|ref|XP_002969242.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300162718|gb|EFJ29330.1| hypothetical protein SELMODRAFT_15428 [Selaginella moellendorffii]
gi|300171539|gb|EFJ38139.1| hypothetical protein SELMODRAFT_25552 [Selaginella moellendorffii]
Length = 197
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 4/170 (2%)
Query: 94 RSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
RS P +LYV N+ + D L + F G EV + G SRG ++T+ + +
Sbjct: 11 RSEPAPNTKLYVGNIAWNVDSKMLADCFNGVGITELEEVMYDRMLGKSRGFAFVTLSTED 70
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+AK AI LDG ++ GR +RV + + P + +P K +V N+ W
Sbjct: 71 AAKTAIEKLDGHELEGRPLRVNYPQVPRGGGGFGGGFGTRPS---IPANPAKCFVANIPW 127
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+V + L+ F GTVV R+L D + +R GF++F++ E + A+S
Sbjct: 128 SVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPDEANNAIS 177
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 50/84 (59%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A P + +V N+P S D L E F GTV+ + + E+G SRG G++T + +
Sbjct: 111 PSIPANPAKCFVANIPWSVDDQGLQEFFSSHGTVVDCRILTDAESGRSRGIGFVTFATPD 170
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
A NAI ALDG+++GGR +RV +
Sbjct: 171 EANNAISALDGAELGGRSIRVALA 194
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+G V GR + V + R + K+ + LYV NL ++ E LR
Sbjct: 252 NGMQVSGRLLYVGRAQKRGERQNELKRRFEHTKQDRLNRCQGVNLYVKNLDDSIDDEKLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + + +PL+
Sbjct: 312 KEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----IGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAISTMNGML 162
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 NRCQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G +G + + V + R
Sbjct: 347 TKAVTEMNGRIIGTKPLYVALAQRKEER 374
>gi|301119623|ref|XP_002907539.1| nucleolin, putative [Phytophthora infestans T30-4]
gi|262106051|gb|EEY64103.1| nucleolin, putative [Phytophthora infestans T30-4]
Length = 496
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E D ++V P+ + E+++ LP S E+ E F G V + + G S
Sbjct: 234 QENGDAAAVANPQ---KTLEIFIAGLPWSATEDEVKEHFAGCGEVTGARIPL--QNGRSS 288
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
G ++T + +A+ A +A+DG D GGR M++R + N E S
Sbjct: 289 GTAFVTFATSEAAE-AALAMDGQDFGGRWMKIRTAEKKNMFDEKPEGCTS---------- 337
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+++GNLSW V +R FG G ++S R+ DR+ R FG + F+S D A+
Sbjct: 338 ---VFIGNLSWDVDENTVRETFGECGEILSCRLATDRETGEFRGFGHVDFASTEAVDEAV 394
Query: 262 SLNGT 266
L G+
Sbjct: 395 KLAGS 399
>gi|388518645|gb|AFK47384.1| unknown [Lotus japonicus]
Length = 307
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 13/198 (6%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLS 128
E G+ + D+ EE + A P E ++V NLP + L +F+ G+V
Sbjct: 89 ENEGEPTWANEDSDETEGGEEVVASAEPSEDLKIFVGNLPWDVESENLAMLFEEAGSVEF 148
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
EV N T SRG G++ M + + A+ G ++ GR + V + +R
Sbjct: 149 AEVIYNKATNQSRGFGFVIMSTAEDLEKALNKFSGYELDGRVLTVNKATPKEARPER--- 205
Query: 189 LISPPKKIFVYESPHK----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
PP+ +YVGNL W+V L F G V +AR++ DR+ +R
Sbjct: 206 ---PPRTFGSGSGSRDSGLSVYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSR 262
Query: 245 VFGFISFSSDAERDAALS 262
FGF++ SS+A+ + A++
Sbjct: 263 GFGFVTMSSEADINGAIA 280
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP S D + L E+F+ G V + + + ETG SRG G++TM S AI AL
Sbjct: 223 VYVGNLPWSVDAARLEEIFREHGNVENARIVMDRETGRSRGFGFVTMSSEADINGAIAAL 282
Query: 162 DGSDVGGREMRV 173
DG + GR +RV
Sbjct: 283 DGQSLDGRTIRV 294
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FGTVLS +V+ + +G S+G G++ + +A+NAI L
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + E PK VY V NLS EDL+
Sbjct: 184 NGMLINDKQVYVGLFI----RRQEREQTNGSPKFTNVY-------VKNLSETYTDEDLKK 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG +GT+ SA V+ D G+ +R FGF++F + D+ A LNGT
Sbjct: 233 LFGPYGTITSATVMKDVNGK-SRCFGFVNFQNPDSAAAAVERLNGTT 278
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL ++ +L ++F P+GT+ S V ++ G SR G++ + +SA A+ L
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKD-VNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 162 DGSDVGG-REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G+ + R + V + R +A I ++I YE LY+ NL + E
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQ-ERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L++ F FGT+ S +V+ D G+ ++ GF+SFS+ E AL+ +NG + + +PL
Sbjct: 334 LKDLFSEFGTITSCKVMIDSNGR-SKGSGFVSFSTPEEASKALNEMNGKL----IGRKPL 388
Query: 278 F 278
+
Sbjct: 389 Y 389
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N F +L E+F FG LSV V ++ E G SRG G++ A+ A+ +
Sbjct: 193 VYIKNFGEDFTDEKLKEVFSAFGRTLSVRVMKD-EKGRSRGFGFVNYAHHEDAQKAVNEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+ + V + R + K +I Y+ + LYV NL ++ E L
Sbjct: 252 NGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRIQRYQGVN-LYVKNLDDSIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +GT+ SA+V+ D G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKEFAPYGTITSAKVMTD--GSQSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYVNFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYDVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D KG ++ +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEKG--SKGYGFVHFETQEAANRAIETMNGML 162
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVE---DEINGK-----------DNVGGNEVDDDSSVEEPR 94
RS GF + D + V E EINGK + G + D ++
Sbjct: 229 RSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQIKQDRI 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
R + LYV NL S D L + F P+GT+ S +V + S+G G++ S A
Sbjct: 289 QRYQGVNLYVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGSQ--SKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G V + + V +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L+E+FKPFGT+L+V V R+ T S G GY+ S +SA A+ AL
Sbjct: 31 LYVGDLDPVVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYVNFNSHDSAAKAMEAL 90
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + MR+ + + R+ Y ++V NL V +L
Sbjct: 91 NFKRVGDKCMRIMW------QQRDP---------TLRYSGNGNIFVKNLKNEVDSRELSV 135
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
F +FG ++S +V+ D +G+ +R +GF+ F +D A ++A ++NG
Sbjct: 136 IFKKFGDILSCKVMEDEEGK-SRGYGFVHFKNDNAAKEAIENMNG 179
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D EL +FK FG +LS +V + E G SRG G++ + N+AK AI +
Sbjct: 119 IFVKNLKNEVDSRELSVIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEAIENM 177
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D E ++ + N RNA + + +Y+ + V E +
Sbjct: 178 NGEKDHADEEKKMGLYV-ANFIRRNARLAT-------LVANFTNVYIKQVLPTVDKEVIE 229
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269
F +FG + S+ D+ G RVF F +F + DA ++ + E
Sbjct: 230 KFFSKFGGITSSATCKDKNG---RVFAFCNF--EKHEDAVKAIEASHEQ 273
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+ LYV N E+L F +G + S RV+ D G +R FGF+SF + + +AAL
Sbjct: 312 NNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANG-NSRGFGFVSFENADQANAALR 370
Query: 262 SLNGTV 267
+NG +
Sbjct: 371 EMNGRM 376
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F L E+FK +G + S V + G SRG G+++ + + A A+ +
Sbjct: 314 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDA-NGNSRGFGFVSFENADQANAALREM 372
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 373 NGRMLNGKPLIVNIAQRRDQR 393
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A +++NG
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|255646669|gb|ACU23808.1| unknown [Glycine max]
Length = 125
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 12/121 (9%)
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
M I I L+G + GR +RV FS S+ + PK+ E+ HKL+V
Sbjct: 1 MSCIEDCNAVIENLNGKEFLGRTLRVNFS----SKPK--------PKEPLYPETEHKLFV 48
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
GNLSW+V E L F +GTVV ARVL+D + +R +GF+ +S+ AE +AA++ V
Sbjct: 49 GNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDV 108
Query: 268 E 268
E
Sbjct: 109 E 109
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 59 LAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISE 115
++ +++ V+E+ +NGK+ +G + SS +P+ P +L+V NL S
Sbjct: 1 MSCIEDCNAVIEN-LNGKEFLGRTLRVNFSSKPKPKEPLYPETEHKLFVGNLSWSVTNEI 59
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L + F+ +GTV+ V + ETG SRG G++ + + A+ AL+ ++ GR MRV
Sbjct: 60 LTQAFQEYGTVVGARVLYDGETGRSRGYGFVCYSTQAEMEAAVAALNDVELEGRAMRVSL 119
Query: 176 S 176
+
Sbjct: 120 A 120
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A +++NG
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLPPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FGTVLS +V+ + +G S+G G++ + +A+NAI L
Sbjct: 125 VFIKNLDTSIDNKALHDTFAAFGTVLSCKVALD-SSGQSKGYGFVQFDNEEAAQNAIKRL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R + E PK VY V NLS EDL+
Sbjct: 184 NGMLINDKQVYVGLFI----RRQEREQTNGSPKFTNVY-------VKNLSETYTDEDLKK 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG +GT+ SA V+ D G+ +R FGF++F + D+ A LNGT
Sbjct: 233 LFGPYGTITSATVMKDVNGK-SRCFGFVNFQNPDSAAAAVERLNGTT 278
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL ++ +L ++F P+GT+ S V ++ G SR G++ + +SA A+ L
Sbjct: 216 VYVKNLSETYTDEDLKKLFGPYGTITSATVMKD-VNGKSRCFGFVNFQNPDSAAAAVERL 274
Query: 162 DGSDVGG-REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G+ + R + V + R +A I ++I YE LY+ NL + E
Sbjct: 275 NGTTINNDRVLYVGRAQRKAEREAELKAKIEQ-ERISRYEKLQGANLYLKNLDDSFSDEK 333
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L++ F FGT+ S +V+ D G+ ++ GF+SFS+ E AL+ +NG + + +PL
Sbjct: 334 LKDLFSEFGTITSCKVMIDSNGR-SKGSGFVSFSTPEEASKALNEMNGKL----IGRKPL 388
Query: 278 F 278
+
Sbjct: 389 Y 389
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 84 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 142
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 143 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 199
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 200 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 253
Query: 277 LF 278
L+
Sbjct: 254 LY 255
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 133 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 192
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 193 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 250
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 251 TKPLYVALAQRKEER 265
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 12/182 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L E+F FG LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 VYVKNLQMDIDEQGLEELFSQFGKTLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V G+ + V +++ N R + + + + LYV NL ++ E
Sbjct: 252 NGKEVRGQLLYVGRAQKWAERQNELKRKFQQMKQMKQDRLNHYQGVNLYVKNLDDSIDNE 311
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + + +P
Sbjct: 312 RLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGCI----LGTKP 365
Query: 277 LF 278
L+
Sbjct: 366 LY 367
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSLAGPILSIRVCRDVATRRSLGYAYINFQQPADAELALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG + ++ F
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETREAAQQAISTMNGMLLNNRKVF 169
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 100/182 (54%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F+ FG LSV+V R+ + G S+G G++ A+NAI +
Sbjct: 292 VYIKNFGEDMDEDRLSKIFEKFGPTLSVKVMRD-DCGRSKGFGFVNFQKHEDAQNAIDNM 350
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR++ R + ++ ++ R+ E L +I Y+ + LY+ NL + E
Sbjct: 351 NGKELNGRQIYAGRAQKKLERQTQLQRHFEQLKQ--NRIVRYQGVN-LYIKNLDDDIDDE 407
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
+LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + VA +P
Sbjct: 408 NLRKEFSSFGTITSAKVMMN--NGRSKGFGFVCFSAPEEATTAVTEMNGRL----VASKP 461
Query: 277 LF 278
L+
Sbjct: 462 LY 463
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ + +
Sbjct: 112 LYVGDLHHEVTEAMLYEKFSPAGPILSIRVCRDAVTHRSLGYAYVNFQHLADAERVMTDM 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F V NL ++ + L +
Sbjct: 172 NLYIIKGKPVRLMWS------QRDPSLRKSGIGNVF---------VKNLEKSINNKSLYD 216
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F AER A +NG +
Sbjct: 217 AFSSFGNILSCKVITDDNG--SKGYGFVHFEHRESAER-AIQKMNGIL 261
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LY+ NL D L + F FGT+ S +V N G S+G G++ + A
Sbjct: 389 RYQGVNLYIKNLDDDIDDENLRKEFSSFGTITSAKVMMN--NGRSKGFGFVCFSAPEEAT 446
Query: 156 NAIIALDGSDVGGREMRV 173
A+ ++G V + + V
Sbjct: 447 TAVTEMNGRLVASKPLYV 464
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ ++D +L E F PFGT+ S+ +S++ E+G SRG G++ A A+ L
Sbjct: 230 VYVKNINLNWDEDKLRETFSPFGTISSIFLSKD-ESGKSRGFGFVNFEKHEDAVKAVEEL 288
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ D+ G+++ V + S M S EA + +++ Y+ + L+V NL ++
Sbjct: 289 NNKDIDGQKLYVGRAQKKSERMESLKHQYEA--ARQEQLNKYQG-YNLFVKNLDDSIDDA 345
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
L F +GT+ SA+V+ D G+ ++ FGF+ +SS E A++ + VA +PL
Sbjct: 346 KLEEEFKPYGTITSAKVMLDDAGK-SKGFGFVCYSSPEEATKAIT---EMHQRMVAGKPL 401
Query: 278 F 278
+
Sbjct: 402 Y 402
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ E ++ LYV L S S+L E+F P G V ++ V R+ + S G Y+
Sbjct: 35 STAESTQNSETLASLYVGELDPSVTESDLFEVFSPIGQVSTIRVCRDAVSKQSLGYAYVN 94
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + G+ R+ +S S RN I ++
Sbjct: 95 FQSHADGEKALEELNYTPIKGKACRIMWSQRDPSLRRNGSGNI---------------FI 139
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL A+ + L + F FG ++S ++ D G ++ FGF+ + S++ + A ++NG
Sbjct: 140 KNLHPAIDNKTLHDTFSAFGKILSCKIATDENG-NSKGFGFVHYEESESAKAAIENVNGM 198
Query: 267 -VESHTVAFQP 276
+ H V P
Sbjct: 199 LLNDHEVYVGP 209
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +++ + E G S+G G++ SAK AI +
Sbjct: 137 IFIKNLHPAIDNKTLHDTFSAFGKILSCKIATD-ENGNSKGFGFVHYEESESAKAAIENV 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + E+ V + R LI+ ++V NL+W + LR
Sbjct: 196 NGMLLNDHEVYVGPHLAKKDRQSKMRELIANFTNVYVKNI-------NLNW--DEDKLRE 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FGT+ S + D G+ +R FGF++F
Sbjct: 247 TFSPFGTISSIFLSKDESGK-SRGFGFVNF 275
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 64 EEAVVVEDEINGKDNVGGNEV-----------------DDDSSVEEPRSRARPCELYVCN 106
E+AV +E+N KD + G ++ +++ +E ++ + L+V N
Sbjct: 279 EDAVKAVEELNNKD-IDGQKLYVGRAQKKSERMESLKHQYEAARQEQLNKYQGYNLFVKN 337
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
L S D ++L E FKP+GT+ S +V + + G S+G G++ S A AI + V
Sbjct: 338 LDDSIDDAKLEEEFKPYGTITSAKVMLD-DAGKSKGFGFVCYSSPEEATKAITEMHQRMV 396
Query: 167 GGREMRVRFS 176
G+ + V +
Sbjct: 397 AGKPLYVALA 406
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 244
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 245 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 298
Query: 277 LF 278
L+
Sbjct: 299 LY 300
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 95 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 145 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 189
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 178 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 237
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 238 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 295
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 296 TKPLYVALAQRKEER 310
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L E+F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQELFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|71745214|ref|XP_827237.1| polyadenylate-binding protein 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831402|gb|EAN76907.1| polyadenylate-binding protein 1, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331451|emb|CBH14445.1| PABP1 [Trypanosoma brucei gambiense DAL972]
Length = 566
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + +L+++FKP+GT+L+V V R+ T S G GY+ +NSA A+ L
Sbjct: 23 LYVGDLDPAINEPQLVDIFKPYGTILNVRVCRDIITQRSLGYGYVNYDDVNSASKAMEEL 82
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V +L
Sbjct: 83 NFKRVGEKCIRIMW------QQRDP---------ALRYSGSGNIFVKNLKEEVDSRELSL 127
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280
F +FG ++S +V+ D G+ +R +GF+ F D AA+ +NG E L+
Sbjct: 128 IFKKFGEILSCKVMDDESGK-SRGYGFVHFKDDDAAKAAIEKMNGDKEHADADKAALYVA 186
Query: 281 NYV 283
N++
Sbjct: 187 NFI 189
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 7/168 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ L + D + + F FG + S + ++ R + + A AI A
Sbjct: 205 VYIKQLLPTVDKDVIEKFFSKFGGITSAAICKDKN---GRAFAFCNFEKHDDAVKAIEAS 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLR 220
+V G ++ R +E LI+ +K +S + LYV N +DL
Sbjct: 262 HDQEVEGVTQPGEKLYVQRAQPR-SERLIALRQKYMQCQSLGNNLYVRNFDAEFTEKDLN 320
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F +G + S RV+ D G +R FGF+SF + + +AAL +NG +
Sbjct: 321 ELFKEYGVIRSCRVMTDANG-ISRGFGFVSFENADQANAALREMNGRM 367
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPH------KLYVGNLSWA 213
+G D+G E + + + + L K+ F + + H LYV NL
Sbjct: 244 NGKDMG--ESKSLYVARAQKKAERQQEL----KRKFEELKKKRHDSVFGVNLYVKNLDDT 297
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
+ E LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V +
Sbjct: 298 IDDERLRKDFSMYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNGRV----I 352
Query: 273 AFQPLF 278
+PL+
Sbjct: 353 GSKPLY 358
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKGIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVAIDEKG-NSKGYGFVHFETEEAANTSIDRVNGML 154
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTDEE-GRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G +G + + V +
Sbjct: 348 NGRVIGSKPLYVALA 362
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK ++S LYV NL ++ E
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKKK-RHDSAFGVNLYVKNLDDSIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V V +PL
Sbjct: 303 LCKEFSPYGTITSAKVMTDEEGR-SKGFGFVCFISANEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D L + F P+GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDSIDDERLCKEFSPYGTITSAKVMTD-EEGRSKGFGFVCFISANEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + S L + F G VLS+ V R+ + S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKTIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D K ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKA-NSKGYGFVHFETEEAANTSIDKVNGML 154
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|328768982|gb|EGF79027.1| hypothetical protein BATDEDRAFT_12759 [Batrachochytrium
dendrobatidis JAM81]
Length = 820
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 7/189 (3%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
VD DS E+ S L+V LP + +L E F G V S +++ TG+S GC
Sbjct: 51 VDVDSDGEDTSSVYSKSTLFVSTLPFTAKADDLEEFFSQIGPVRSCFIAKQKLTGLSSGC 110
Query: 144 GYLTMGSINSAKNAIIALDGSD-VGGREMR----VRFSIDMNSRTRNAEALISPPKKIFV 198
GY+ A+ A++ L +GGR ++ +R SI + ++ A I +
Sbjct: 111 GYVHFALAEDAQRALVELKKQKFMGGRTLKMKIALRKSIVVQRKSGKPRATIKSVIEPTK 170
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAER 257
+ +L + NLS+ KPE+L+N F FG V V H G+ R FGF+ F + D +
Sbjct: 171 AKQRARLIIRNLSFNCKPENLQNVFSAFGIVKDCSVPHLDDGK-ARGFGFVEFETMDCAQ 229
Query: 258 DAALSLNGT 266
A ++NGT
Sbjct: 230 RALQAVNGT 238
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 21/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAYETTEAAEAAVQAL 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPH------KLYVGNLSWA 213
+G D+G E + + + + L K+ F + + H LYV NL
Sbjct: 244 NGKDMG--ESKSLYVARAQKKAERQQEL----KRKFEELKKKRHDSVFGVNLYVKNLDDT 297
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
+ E LR F +GT+ SA+V+ D +G+ ++ FGF+ F S E A++ LNG V +
Sbjct: 298 IDDERLRKDFSMYGTITSAKVMTDEEGR-SKGFGFVCFISPNEATCAVTELNGRV----I 352
Query: 273 AFQPLF 278
+PL+
Sbjct: 353 GSKPLY 358
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLIRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKGIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVAIDEKG-NSKGYGFVHFETEEAANMSIDRVNGML 154
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L + F +GT+ S +V + E G S+G G++ S N A A+ L
Sbjct: 289 LYVKNLDDTIDDERLRKDFSMYGTITSAKVMTD-EEGRSKGFGFVCFISPNEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G +G + + V +
Sbjct: 348 NGRVIGSKPLYVALA 362
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIKKMNGML 162
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L +F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQGLFSKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT----------RNAEALISPPKKIFVYESPHKLYVGNL 210
+G D+ G+++ V R + +T ++ + P+ I V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVES 269
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG +
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI-- 367
Query: 270 HTVAFQPLF 278
VA +PL+
Sbjct: 368 --VATKPLY 374
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IFV NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLDRSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 213 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 328
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 329 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 382
Query: 277 LF 278
L+
Sbjct: 383 LY 384
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 179 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG
Sbjct: 229 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNG 273
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 262 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 321
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 322 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 379
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 380 TKPLYVALAQRKEER 394
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 15/183 (8%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR +++ NL +S D L + F FG +LS +++ +P +G SRG G++
Sbjct: 111 SNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQ 169
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
SA++AI L+G + +++ V + R ++ E + S K +YV
Sbjct: 170 FEKDESAQSAIDKLNGMLINDKKVFVGPFV----RKQDRENVSSNIK-------FSNVYV 218
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NLS V ++L+ FG++GT+ SA V+ D G+ +R FGF++F ++DA A LN
Sbjct: 219 KNLSDTVTDDELKEMFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELNDG 277
Query: 267 VES 269
V S
Sbjct: 278 VVS 280
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 219 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EQGVSKGFGFVN 275
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SAK A+ L+ ++ G+++ + R AE S +K E+
Sbjct: 276 YENHESAKQAVDELNEKEINGKKLYAGRA--QTKSEREAELKKSHEEKRIENEAKSAGVN 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LY+ NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 392
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 393 NGKM----IGTKPLY 403
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG +
Sbjct: 155 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGML 200
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 197 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
FG +S + D +G ++ FGF+++ + ++ + A LN
Sbjct: 248 LVKPFGPTISVALSRDEQG-VSKGFGFVNYENHESAKQAVDELN 290
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 150 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATD-FNGKSKGYGFIQFESESSAKDAIN 208
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 209 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 257
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG
Sbjct: 258 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNG 303
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 243 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 301
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 302 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 361
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F FG V S +V+ D G+ ++ GF+SF++ + +A L +NG + V +PL+
Sbjct: 362 KLFECFGEVASCKVMLDSHGR-SKGCGFVSFATVEDANNAILKMNGKM----VGKKPLY 415
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 340 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 398
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 399 NAILKMNGKMVGKKPLYV 416
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D LL+ F FGTVLS +++ + G S+G G++ +A+NAI
Sbjct: 127 ANVFIKNLDPSIDNKALLDTFAAFGTVLSCKIALD-NNGQSKGYGFVQFEQEEAAQNAIK 185
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + PK VY V NLS +DL
Sbjct: 186 RLNGMLINDKQVYVGLFVRHQERNXGNGS----PKFTNVY-------VKNLSETTTDDDL 234
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
+N FG++G++ SA V+ D G ++ FGF++F SSD+ A LNG
Sbjct: 235 KNIFGKYGSITSAVVMRDASG-MSKCFGFVNFQSSDSAAAAVEHLNG 280
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + +L ++F+ VLS+ V R+ S G Y+ S A NA+
Sbjct: 39 ASLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALE 98
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +R+ FS S ++ A +++ NL ++ + L
Sbjct: 99 HLNFTPLNGKPIRIMFSHRDPSIRKSGFA---------------NVFIKNLDPSIDNKAL 143
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAFQPLF 278
+ F FGTV+S ++ D GQ ++ +GF+ F +A ++A LNG + + + LF
Sbjct: 144 LDTFAAFGTVLSCKIALDNNGQ-SKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLF 202
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F +G++ S V R+ +G+S+ G++ S +SA A+ L
Sbjct: 220 VYVKNLSETTTDDDLKNIFGKYGSITSAVVMRD-ASGMSKCFGFVNFQSSDSAAAAVEHL 278
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--------LYVGNLSWA 213
+G+ ++ + + R EA + + F E +K LY+ NL +
Sbjct: 279 NGATFNDDKV---WYVGKAQRKSEREAEL---RAKFEQERKNKFEKFKGXNLYLKNLDDS 332
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
V E L F FGT+ S +V+ D +G ++ GF++F + E AL+ +NG + +
Sbjct: 333 VNDEKLXELFSEFGTITSCKVMLDPQG-LSKGSGFVAFLTPEEATRALNVMNGKM----I 387
Query: 273 AFQPLF 278
+PL+
Sbjct: 388 GRKPLY 393
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L E+F FGT+ S +V +P+ G+S+G G++ + A A+ +
Sbjct: 324 LYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQ-GLSKGSGFVAFLTPEEATRALNVM 382
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA 188
+G +G + + V + R +A
Sbjct: 383 NGKMIGRKPLYVAVAQRKEERKARLQA 409
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|325185008|emb|CCA19499.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 430
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LPR D L F+ FG + +V + TG S+G G+LT + A +AI
Sbjct: 12 KVFVAGLPRDVDDDALYNKFRAFGDMFQAKVVFDAATGRSKGFGFLTYRQYDHAMDAIDK 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISP-------PKKIFVYESPHKLYVGNLSWA 213
+G + GR + VRF + +T + + +IS PK ++ LYVGNLS+
Sbjct: 72 TNGKNWNGRVLNVRF---LKPKTGSEKDMISTSAPEVPVPKISTSAKNCTTLYVGNLSYE 128
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
+ + +R F FG + + R+ + + R FG++ F AL+ NG +
Sbjct: 129 ITEDIIRRVFSPFGDIKAVRLAQHIQTKKFRGFGYVQFYDTESCTKALATNGKI 182
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 149 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATD-FNGKSKGYGFIQFESESSAKDAIN 207
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 208 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 256
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG
Sbjct: 257 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNG 302
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 242 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 300
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 301 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 360
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F FG V S +V+ D G+ ++ GF+SF++ + +A L +NG + V +PL+
Sbjct: 361 KLFECFGEVASCKVMLDSHGR-SKGCGFVSFATVEDANNAILKMNGKM----VGKKPLY 414
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 339 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 397
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 398 NAILKMNGKMVGKKPLYV 415
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 10/179 (5%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+AK A+ ++G D+ G+ + V + R + + K+ I Y+ KLYV
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV-KLYVK 298
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL + E LRN F FG+++ +V+ ++GQ ++ FGFI FSS DA + A + +NG
Sbjct: 299 NLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQ-SKGFGFICFSSLEDATK-AMIEMNG 354
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 93 PRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R R R +LYV NL + D +L F FG+++ V+V + + G S+G G++
Sbjct: 283 KRERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFS 340
Query: 150 SINSAKNAIIALDGSDVGGR 169
S+ A A+I ++G +G +
Sbjct: 341 SLEDATKAMIEMNGCFLGSK 360
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 208 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 266
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 267 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 324 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 377
Query: 277 LF 278
L+
Sbjct: 378 LY 379
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 116 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 173
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 174 NGMLLNDRKVFVGRFK----SR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 223
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 224 ELFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 268
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 257 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 316
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 317 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 374
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 375 TKPLYVALAQRKEER 389
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-NSGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRKFEQMKQ--DRLSRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G++LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D+ G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDKHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
SR + LYV NL S D +L + F P+G + S +V E S+G G++ S A
Sbjct: 289 SRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG V V +PL
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRV 173
+G VG + + V
Sbjct: 348 NGRVVGSKPLYV 359
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 391 NGKM----IGTKPLY 401
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
FG +S + D KG ++ FGF+++ + ++ R A LN
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELN 288
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG +
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGML 198
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L EMF FGT+LS +V+ + G S+G G++ S +SAK+AI
Sbjct: 173 ANVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDF-NGKSKGYGFIQFESESSAKDAIN 231
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G G+++ V I R +A + +YV NL DL
Sbjct: 232 GLNGMLANGQKIFVGLFIRRQEREHTGDA-----------NNFTNVYVKNLPKHFSDNDL 280
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
N F FG + SA V+ D G +R FGF++F S+ R+A +LNG
Sbjct: 281 LNEFSSFGAITSAIVMRDANG-LSRCFGFVNFEKSECARNAVKNLNG 326
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ F ++LL F FG + S V R+ G+SR G++ A+NA+ L
Sbjct: 266 VYVKNLPKHFSDNDLLNEFSSFGAITSAIVMRDA-NGLSRCFGFVNFEKSECARNAVKNL 324
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +G + V + + R +A K + F LY+ NL + E LR
Sbjct: 325 NGKSIGDMVLYVARAQKKSERQAELKAKFEHDKNQKFEKLQTVNLYLKNLDDDINDEHLR 384
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F FG V S +V+ D G+ ++ GF+SF++ + +A L +NG + V +PL+
Sbjct: 385 KLFECFGEVASCKVMLDSHGR-SKGCGFVSFATVEDANNAILKMNGKM----VGKKPLY 438
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LY+ NL + L ++F+ FG V S +V + G S+GCG+++ ++ A
Sbjct: 363 KLQTVNLYLKNLDDDINDEHLRKLFECFGEVASCKVMLDSH-GRSKGCGFVSFATVEDAN 421
Query: 156 NAIIALDGSDVGGREMRV 173
NAI+ ++G VG + + V
Sbjct: 422 NAILKMNGKMVGKKPLYV 439
>gi|313246014|emb|CBY34981.1| unnamed protein product [Oikopleura dioica]
Length = 225
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP+SF E +F G V + R+ +TG S G G++ M S + A+ AI L
Sbjct: 73 LIVNYLPQSFTDQEFFNLFSTVGRVNKARIIRHRQTGYSFGYGFIDMASADDAERAIRKL 132
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +G + ++V +S+ RTRN LY+ L +L +
Sbjct: 133 NQYQIGHKRLKVAYSLPSGDRTRNIN-----------------LYIKGLPKHWTRRELED 175
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
HF RFG + +AR+L D QT GF+ ++ A + A +NG
Sbjct: 176 HFTRFGAIRNARILFDPATQTGTGVGFLLYAEKAMAERACEEMNG 220
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 6/176 (3%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LYV NL L E F FG ++S+ + ++ E G S+G G++ S +
Sbjct: 187 PDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKD-ENGQSKGFGFVNYDSPD 245
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ A+DGS G + + V + R + L + +YV N+
Sbjct: 246 DARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEKG---LKHMGSNIYVKNIDT 302
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
+V E+LR+HF G V+SA+V+ D KG T++ FGF+ FS+ E ++S NG +
Sbjct: 303 SVGDEELRDHFSACGEVLSAKVMRDDKG-TSKGFGFVCFSTVVEAFKSMSCFNGEL 357
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L ++F+ +G +LS +++R+ E G S+G GY+ S SA AI +
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS V +++ V I R +E + F LYV NL V + L
Sbjct: 164 NGSTVRDKQIYVGKFI------RKSERSLPDLDAKFT-----NLYVKNLDPVVTEKHLGE 212
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
F FG +VS + D GQ ++ FGF+++ S D R A +++G+
Sbjct: 213 KFSSFGKIVSLAIKKDENGQ-SKGFGFVNYDSPDDARRAMEAMDGS 257
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L ++L + F F T++S V ++ TG S GY+ + S A AI
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ +RV + +R+A+A S +FV NL+ ++ L +
Sbjct: 77 NHSSLNGKVIRVMW------LSRDADARKSGKGNVFVK---------NLAASIDNVGLHD 121
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
F ++G ++S+++ G+ ++ FG+I F S+ + A+ +NG+
Sbjct: 122 LFQKYGNILSSKIARSEDGK-SKGFGYIQFDSEESANVAIQKMNGS 166
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|313230477|emb|CBY18692.1| unnamed protein product [Oikopleura dioica]
Length = 227
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP+SF E +F G V + R+ +TG S G G++ M S + A+ AI L
Sbjct: 73 LIVNYLPQSFTDQEFFNLFSTVGRVNKARIIRHRQTGYSFGYGFIDMASADDAERAIRKL 132
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +G + ++V +S+ RTRN LY+ L +L +
Sbjct: 133 NQYQIGHKRLKVAYSLPSGDRTRNIN-----------------LYIKGLPKHWTRRELED 175
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
HF RFG + +AR+L D QT GF+ ++ A + A +NG
Sbjct: 176 HFTRFGAIRNARILFDPATQTGSGVGFLLYAEKAMAERACEEMNG 220
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 183 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 241
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 242 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 300
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F+ ++E A++ LNG V V +PL
Sbjct: 301 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNPESEATCAVTELNGRV----VGSKPL 355
Query: 278 F 278
+
Sbjct: 356 Y 356
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + A A+ L
Sbjct: 287 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNPESEATCAVTEL 345
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 346 NGRVVGSKPLYVALA 360
>gi|238879474|gb|EEQ43112.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 399
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A+ + G ++ GR + + S N R + SPP L++
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--------LFI 274
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
GNLS+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG
Sbjct: 275 GNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 332 NGEYIEGRPCRLDFS 346
>gi|68473894|ref|XP_719050.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|68474099|ref|XP_718946.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440741|gb|EAL00044.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
gi|46440849|gb|EAL00151.1| potential nuclear localization sequence binding protein Nsr1p
[Candida albicans SC5314]
Length = 400
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 16/179 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S P L+V L + D + L F+ G V+ V TG SRG GY+ S ++A
Sbjct: 163 STEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 155 KNAIIALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A+ + G ++ GR + + S N R + SPP L++
Sbjct: 223 EKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDT--------LFI 274
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
GNLS+ ++L N FG +G V+S RV Q + FG++ FSS E AAL ++NG
Sbjct: 275 GNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 332 NGEYIEGRPCRLDFS 346
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ +P +G SRG G++ SA++AI L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R ++ E + S K +YV NLS V ++L+
Sbjct: 184 NGMLINDKKVFVGPFV----RKQDRENVSSNIKF-------SNVYVKNLSDTVTDDELKE 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
FG++GT+ SA V+ D G+ +R FGF++F ++DA A LNG +
Sbjct: 233 MFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELNGKI 278
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LY+ NL + D +L E+F +G + S +V R+ G+SRG G++
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVSRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G VG + + V + R +A S
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFS 407
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +++ +P +G SRG G++ SA++AI L
Sbjct: 125 IFIKNLDKSIDNKALYDTFCAFGNILSCKIATDP-SGESRGYGFVQFEKDESAQSAIDKL 183
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R ++ E + S K +YV NLS V ++L+
Sbjct: 184 NGMLINDKKVFVGPFV----RKQDRENVSSNIKF-------SNVYVKNLSDTVTDDELKE 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
FG++GT+ SA V+ D G+ +R FGF++F ++DA A LNG +
Sbjct: 233 MFGKYGTITSAVVMRDSDGK-SRCFGFVNFENADAAAQAVQELNGKI 278
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LY+ NL + D +L E+F +G + S +V R+ G+SRG G++
Sbjct: 304 EKNVQEVAEKFQNTNLYLKNLEENIDDEKLRELFAEYGNITSCKVMRD-SNGVSRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G VG + + V + R +A S
Sbjct: 363 AFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFS 407
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + E+G S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG +
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI--- 357
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 358 -VATKPLY 364
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|261327115|emb|CBH10091.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 377
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL + D + L ++F P+G +LS V RN TG S G ++ + A+ A++
Sbjct: 27 LFMCNLSAAVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQARAALVGC 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G V GR + V+++ + T EA KKI KL++ N+ V PED++
Sbjct: 87 HGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------KLFIRNIPLDVGPEDVQR 136
Query: 222 HFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDAERDAA 260
F RFGTV S + D T R F++F+ D A
Sbjct: 137 LFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESGVADRA 183
>gi|72387127|ref|XP_843988.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175978|gb|AAX70101.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800520|gb|AAZ10429.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 377
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL + D + L ++F P+G +LS V RN TG S G ++ + A+ A++
Sbjct: 27 LFMCNLSAAVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQARAALVGC 86
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G V GR + V+++ + T EA KKI KL++ N+ V PED++
Sbjct: 87 HGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------KLFIRNIPLDVGPEDVQR 136
Query: 222 HFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDAERDAA 260
F RFGTV S + D T R F++F+ D A
Sbjct: 137 LFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESGVADRA 183
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 20/236 (8%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEV---------DDDSSVEEPRSRARPCELYV 104
GF V +E A D ING + G EV D S ++E +RA +YV
Sbjct: 172 GFGFVHFENEEAAREAIDAINGM-LLNGQEVYVAPHVSKKDRQSKLDE--ARANFTNVYV 228
Query: 105 CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164
NL + +FKP+GT+ SV + ++ E G SRG G++ + A A+ AL+ +
Sbjct: 229 KNLDLEATEEDFENLFKPYGTITSVALEKDAE-GKSRGFGFVDFENHEDAVKAVEALNDT 287
Query: 165 DVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNH 222
+ G+ + V + R + + K K+ Y+ + L++ NL ++ E L+
Sbjct: 288 EYKGQTLYVGRAQKKYERLQELKKQYQASKLEKLAKYQGIN-LFIKNLDDSIDDEKLKEE 346
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F FGT+ SARV+ G+ ++ FGF+ FS+ E A++ VA +PL+
Sbjct: 347 FAPFGTITSARVMRTENGK-SKGFGFVCFSTPEEATRAITEKN---QQIVAGKPLY 398
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L E F FG +LS +++ N ETG S+G G++ + +A+ AI A+
Sbjct: 133 IFIKNLHPDIDNKTLYETFSVFGNILSCKIA-NDETGKSKGFGFVHFENEEAAREAIDAI 191
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + + F +YV NL ED N
Sbjct: 192 NGMLLNGQEVYVAPHVSKKDR----QSKLDEARANFT-----NVYVKNLDLEATEEDFEN 242
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F +GT+ S + D +G+ +R FGF+ F + + A+ +LN T
Sbjct: 243 LFKPYGTITSVALEKDAEGK-SRGFGFVDFENHEDAVKAVEALNDT 287
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E P LYV L S + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 32 EAESPNVENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 91
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ K AI L+ + + GR R+ +S D + R + + +++
Sbjct: 92 NDHEAGKTAIEKLNYTAIKGRPCRIMWSQRDPSMRKKGS----------------GNIFI 135
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL + + L F FG ++S ++ +D G+ ++ FGF+ F + +A R+A ++NG
Sbjct: 136 KNLHPDIDNKTLYETFSVFGNILSCKIANDETGK-SKGFGFVHFENEEAAREAIDAINGM 194
Query: 267 V 267
+
Sbjct: 195 L 195
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L++ NL S D +L E F PFGT+ S V R E G S+G G++ +
Sbjct: 319 EKLAKYQGINLFIKNLDDSIDDEKLKEEFAPFGTITSARVMRT-ENGKSKGFGFVCFSTP 377
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 378 EEATRAITEKNQQIVAGKPLYV 399
>gi|213515090|ref|NP_001135023.1| cytotoxic granule-associated RNA binding protein 1 [Salmo salar]
gi|209738084|gb|ACI69911.1| Nucleolysin TIA-1 [Salmo salar]
Length = 409
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 21/168 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +LP D + L + F+PFG VLS V R+PE+G+S+G G++ A+ AI +
Sbjct: 117 IYVGDLPHECDDNMLAQAFRPFGEVLSSRVVRDPESGLSKGFGFIVYRHQYEAEEAIQKM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK----KIFVYESPHK--LYVGNLSWAVK 215
G + + ++V ++ TR ++A S P+ ++ H LYVGNL ++K
Sbjct: 177 HGGTISSKSVKVSWA------TR-SKATTSVPQLNYNDVYQQSGAHNTTLYVGNLPESMK 229
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
+ L + F +G V+ ++ HD+ F FI D AA S+
Sbjct: 230 EQFLISFFEPYGAVLDTKIFHDKH------FAFIKM--DTHEAAATSI 269
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPF--GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ + D + L+ + + F G ++ +P C ++T +N+A +A+
Sbjct: 23 LHIGNIHSAVDENVLVSILQQFFPGQGFQCKLFPDPNNSPDLYC-FMTFADVNTATSALS 81
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G +V G++++V ++ + + ++ + + H +YVG+L L
Sbjct: 82 ILNGREVMGKKLKVSWASGGAGQFKQSQ----------ISGTTHSIYVGDLPHECDDNML 131
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS--LNGTVESHTV 272
F FG V+S+RV+ D + ++ FGFI + E + A+ GT+ S +V
Sbjct: 132 AQAFRPFGEVLSSRVVRDPESGLSKGFGFIVYRHQYEAEEAIQKMHGGTISSKSV 186
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+S A LYV NLP S L+ F+P+G VL ++ + + ++ M + +
Sbjct: 211 QSGAHNTTLYVGNLPESMKEQFLISFFEPYGAVLDTKIFHD------KHFAFIKMDTHEA 264
Query: 154 AKNAIIALDGSDVGGREMRVRFSID 178
A +I+ +G V G M+V +S D
Sbjct: 265 AATSIVKCNGQPVDGCVMKVWWSRD 289
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 6/169 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D ++ E+ G ++S++V +PE G S+G G+++ + A+ A+ L
Sbjct: 196 VYVKNFGDDMDDEQMKEICAEAGKIVSLKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVL 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++GGR + + R +A I + +I ++ + LY+ NL + E L
Sbjct: 255 NGKEIGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVN-LYIKNLDDPIDDERL 313
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F +GT+ SA+V+ D KG ++ FGF+ FSS E A++ +NG +
Sbjct: 314 REEFSPYGTISSAKVMKDDKG-NSKGFGFVCFSSPEEATKAVTEMNGRI 361
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G+VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHAEKALDTM 74
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR R+ + + R+ S IF+ NL ++ + L +
Sbjct: 75 NFDPIKGRPCRIMW------QQRDPSLRKSGVGNIFIK---------NLDKSIDNKSLYD 119
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F FG ++S ++ D G + +GF+ F ++ DAAL V+ + + +F
Sbjct: 120 TFSAFGNILSCKIAQDELG-NPKGYGFVHFETE---DAALEAIARVDGMLLNDKKVF 172
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 64 EEAVVVEDEINGKDNVGGNEV-------------DDDSSVEEPR----SRARPCELYVCN 106
EEAV V +NGK+ +GG + + + +E+ R +R + LY+ N
Sbjct: 248 EEAVNV---LNGKE-IGGRRLWAGRAKKRAERAAEVKAEIEKKRQERINRFQGVNLYIKN 303
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163
L D L E F P+GT+ S +V ++ + G S+G G++ S A A+ ++G
Sbjct: 304 LDDPIDDERLREEFSPYGTISSAKVMKD-DKGNSKGFGFVCFSSPEEATKAVTEMNG 359
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 85/175 (48%), Gaps = 6/175 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL S + + EMF FG + S V + E G S+G G++ + A
Sbjct: 216 RAKFTNVYVKNLDESINDEQFKEMFSKFGPITSALVQTD-EEGKSKGFGFINFENYEDAH 274
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L+ ++ G+ + V + R K K+ Y+ + LY+ NL
Sbjct: 275 KAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN-LYIKNLDDD 333
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ E LR F +G + SA+V+ D KG T++ FGF+ FSS D A +NG +
Sbjct: 334 IDDEKLRQEFSVYGVITSAKVMCDEKG-TSKGFGFVCFSSPDEATKAVTEMNGRM 387
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +++ + E+G S+G G++ + +A NAI +
Sbjct: 129 VFIKNLDTSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAIKHV 187
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V I R +A I + F +YV NL ++ E +
Sbjct: 188 DGMLLNDKKVYVGRHIPRKER----QAKIEQIRAKFT-----NVYVKNLDESINDEQFKE 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGT 266
F +FG + SA V D +G+ ++ FGFI+F + DA + A +LN T
Sbjct: 239 MFSKFGPITSALVQTDEEGK-SKGFGFINFENYEDAHK-AVDTLNET 283
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 16/160 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ +I + A+ +L
Sbjct: 41 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + +++ NL ++ + L +
Sbjct: 101 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------------NVFIKNLDTSIDNKALHD 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG ++S ++ D G ++ +GF+ + ++ D A+
Sbjct: 146 TFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAADNAI 184
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGAALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGINDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGINDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG V VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRV----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDIKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRVVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 67 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 125
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 126 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 182
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 183 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 236
Query: 277 LF 278
L+
Sbjct: 237 LY 238
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 116 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 175
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 176 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 233
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 234 TKPLYVALAQRKEER 248
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 291
Query: 277 LF 278
L+
Sbjct: 292 LY 293
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 182
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 289 TKPLYVALAQRKEER 303
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + ++E RS+ LY+ NLP EL E+F FG + S V + E G RG G
Sbjct: 252 DRQAKIDEVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFG 308
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVYESPH 203
++ + SA A+ AL D G V + RT R+AE + + YE+
Sbjct: 309 FVNYENHESASKAVDALHDKDYKGN---VLYVARAQKRTERDAE--LKKAHEQQKYETTL 363
Query: 204 K-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAER 257
K LYV NL E L+N F FGT+ S +V+ D KG T++ FGF+ FSS D
Sbjct: 364 KYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKG-TSKGFGFVCFSSPDEAT 422
Query: 258 DAALSLNGTVESHTVAFQPLF 278
A +NG + + +PL+
Sbjct: 423 KAVAEMNGKM----LGSKPLY 439
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 86 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 145
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + I ++ NL + + L +
Sbjct: 146 NYSLIKNKACRIMWSQRDPSLRKTGQGNI---------------FIKNLDETIDNKALHD 190
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + V F
Sbjct: 191 TFAAFGDILSCKVATDEHG-ASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVF 243
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 291
Query: 277 LF 278
L+
Sbjct: 292 LY 293
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 182
Score = 44.3 bits (103), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 289 TKPLYVALAQRKEER 303
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S DI L E F FGT++S +++ + +G S+G G++ S +A+ AI L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATD-ASGQSKGYGFVQYDSEEAAQTAIDKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + + + R++E K F + +YV NLS + +DLR
Sbjct: 189 NGMLMNDKQVYV--GVFLRKQDRDSEM----SKTKF-----NNIYVKNLSDSTSEDDLRK 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG +GT+ S V+ D G+ ++ FGF++F + DA + A +LNG
Sbjct: 238 TFGEYGTITSVVVMRDADGK-SKCFGFVNFENPEDAAK-AVDALNG 281
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +S S+L ++F G V+SV V R+ TG S G GY+ + A AI L
Sbjct: 42 LYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDVL 101
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + + + +RV S D R A +++ NL ++ + L
Sbjct: 102 NFTPLNNKTIRVSVSRRDPTDRKSGA----------------GNIFIKNLDKSIDIKALH 145
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F FGT++S ++ D GQ ++ +GF+ + S +A + A LNG + + + +F
Sbjct: 146 ETFSSFGTIISCKIATDASGQ-SKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVF 203
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 122/265 (46%), Gaps = 34/265 (12%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEING-----KDNVGG-- 81
F+S T+I+ + +S S+ G+ V +E A D++NG K G
Sbjct: 148 FSSFGTIISCKIATDASGQSK----GYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVF 203
Query: 82 -NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
+ D DS + S+ + +YV NL S +L + F +GT+ SV V R+ + G S
Sbjct: 204 LRKQDRDSEM----SKTKFNNIYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDAD-GKS 258
Query: 141 RGCGYLTMGSINSAKNAIIALDGSD-------VGGREMRVRFSIDMNSRTRNAEALISPP 193
+ G++ + A A+ AL+G VG + + +++ SR +
Sbjct: 259 KCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQ-----TVK 313
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+++ Y+ + LYV NL + E L+ F +GT+ S +V+ D G +R GF++FS+
Sbjct: 314 EQVDKYQGVN-LYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSG-ISRGSGFVAFST 371
Query: 254 DAERDAALSLNGTVESHTVAFQPLF 278
E AL G + + +PL+
Sbjct: 372 PEEASRAL---GEMNGKMIVSKPLY 393
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +V+E + + LYV NL + D +L E+F +GT+ S +V R+P +GISRG G++
Sbjct: 309 EQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDP-SGISRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 368 AFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFS 412
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 263
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 264 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTGMNGRI----VATKP 317
Query: 277 LF 278
L+
Sbjct: 318 LY 319
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 114 NGMLLNDRKVSVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 163
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 164 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 208
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 197 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 256
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 257 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTGMNGRIVA 314
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 315 TKPLYVALAQRKEER 329
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|440802763|gb|ELR23692.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 425
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 110/206 (53%), Gaps = 14/206 (6%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFG--T 125
++E NG D+ G+ ++S+ ++ ++ P ++ NLP S + + + F+ G
Sbjct: 150 DEEENGDDSSTGDA--EESNTKKAKTDETPSNANFFIGNLPWSAEEDTVKQFFESQGVSA 207
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185
V +V + + +TG +G GY+ + S +A++AL+G+D GRE++V + N R N
Sbjct: 208 VYAVRLITDRDTGRKKGFGYIETSA--SDVDAVLALNGADFEGRELKVDKA---NERPAN 262
Query: 186 AEALISP---PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
A+ P P++ + +++GNLS+ + + +FGTV + R+++DR+ Q
Sbjct: 263 ADRDTKPRDAPRQSGEAATDGNVFLGNLSFNSTEDSIWAALEQFGTVKAVRIVYDRETQR 322
Query: 243 TRVFGFISFSSDAERDAALSLNGTVE 268
R FG+ F + A++ +GTV+
Sbjct: 323 PRGFGYCEFEDADTANKAIAASGTVD 348
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL SF+ +E + + FGTV +V + + ET RG GY ++A AI
Sbjct: 285 VFLGNL--SFNSTEDSIWAALEQFGTVKAVRIVYDRETQRPRGFGYCEFEDADTANKAIA 342
Query: 160 ALDGSDVGGREMRV 173
A DV GR++R+
Sbjct: 343 ASGTVDVDGRQIRI 356
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 99/201 (49%), Gaps = 20/201 (9%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + ++E RS+ LY+ NLP EL E+F FG + S V + E G RG G
Sbjct: 341 DRQAKIDEVRSQF--TNLYIKNLPTETTTEELNEVFGKFGPITSAAVQSD-EHGKHRGFG 397
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT-RNAEALISPPKKIFVYESPH 203
++ + SA A+ AL D G V + RT R+AE + + YE+
Sbjct: 398 FVNYENHESASKAVDALHDKDYKGN---VLYVARAQKRTERDAE--LKKAHEQQKYETTL 452
Query: 204 K-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
K LYV NL E L+N F FGT+ S +V+ D KG T++ FGF+ FSS E
Sbjct: 453 KYQGVNLYVKNLDDEYDDEKLQNEFTPFGTITSCKVMKDEKG-TSKGFGFVCFSSPDEAT 511
Query: 259 AALS-LNGTVESHTVAFQPLF 278
A++ +NG + + +PL+
Sbjct: 512 KAVAEMNGKM----LGSKPLY 528
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 175 LYVGELDPTVTEAMLYEIFSMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 234
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + I ++ NL + + L +
Sbjct: 235 NYSLIKNKACRIMWSQRDPSLRKTGQGNI---------------FIKNLDETIDNKALHD 279
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + V F
Sbjct: 280 TFAAFGDILSCKVATDEHG-ASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVF 332
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG V V +PL
Sbjct: 303 LRVAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAPSEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDKAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRVAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAPSEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +++ NL F +L +MFKPFG ++S +S E G+S+G ++
Sbjct: 228 SKVEE--QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFVN 284
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESP 202
+ ++AK A+ L+ ++ G+++ V R D R + E + K
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGV--- 341
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
LYV N+ + LR+ F GT+ SA+V+ D KG +R FGF+ FS D A
Sbjct: 342 -NLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKG-ASRGFGFVCFSQPDEATRAVQ 399
Query: 262 SLNGTVESHTVAFQPLF 278
+NG + + +PL+
Sbjct: 400 EMNGKM----IGTKPLY 412
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +V+ + E G SRG ++ + +A AI ++
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAAIKSV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + IF+ NL +DL +
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIK---------NLEPEFTQKDLED 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F FG +VSA + G ++ F F+++++ DA + A LN
Sbjct: 257 MFKPFGEIVSAALSVGEDG-LSKGFAFVNYTTHDAAKKAVDELN 299
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDDKIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G +R F F+ + + DAA+ S+NG +
Sbjct: 164 TFAAFGNILSCKVATDENG-NSRGFAFVHYETGEAADAAIKSVNGML 209
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 129 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 244
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 245 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 298
Query: 277 LF 278
L+
Sbjct: 299 LY 300
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 95 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 145 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 189
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 178 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 237
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 238 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 295
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 296 TKPLYVALAQRKEER 310
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG V V +PL
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 18/197 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +++ NL F +L +MFKPFG ++S +S E G+S+G ++
Sbjct: 228 SKVEE--QRAKFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAALSVG-EDGLSKGFAFVN 284
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESP 202
+ ++AK A+ L+ ++ G+++ V R D R + E + K
Sbjct: 285 YTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGV--- 341
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
LYV N+ + LR+ F GT+ SA+V+ D KG +R FGF+ FS D A
Sbjct: 342 -NLYVKNIDDEWDDDRLRSEFDFAGTITSAKVMRDDKG-ASRGFGFVCFSQPDEATRAVQ 399
Query: 262 SLNGTVESHTVAFQPLF 278
+NG + + +PL+
Sbjct: 400 EMNGKM----IGTKPLY 412
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +V+ + E G SRG ++ + +A AI ++
Sbjct: 147 IFIKNLDDKIDNKALHDTFAAFGNILSCKVATD-ENGNSRGFAFVHYETGEAADAAIKSV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + IF+ NL +DL +
Sbjct: 206 NGMLLNDKKVYVGHHISKKERQSKVEEQRAKFTNIFIK---------NLEPEFTQKDLED 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F FG +VSA + G ++ F F+++++ DA + A LN
Sbjct: 257 MFKPFGEIVSAALSVGEDG-LSKGFAFVNYTTHDAAKKAVDELN 299
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 59 LYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 119 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDDKIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G +R F F+ + + DAA+ S+NG +
Sbjct: 164 TFAAFGNILSCKVATDENG-NSRGFAFVHYETGEAADAAIKSVNGML 209
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 10/193 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +EE RA+ LYV NL E +E+FK +G V S +S + E G S+G G++
Sbjct: 220 SKLEE--MRAQFTNLYVKNLDPEVTQDEFIELFKKYGNVTSAVISVD-EEGKSKGFGFVN 276
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKL 205
+ + A+ A+ L+ ++ G+++ V + R K K+ Y+ + L
Sbjct: 277 FETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQAKLEKLSKYQGVN-L 335
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNG 265
Y+ NL V + LR F FGT+ S +V+ D KGQ ++ FGF+ FSS E A++
Sbjct: 336 YIKNLEDDVDDDKLRAEFEPFGTITSCKVMRDEKGQ-SKGFGFVCFSSPDEATKAVA--- 391
Query: 266 TVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 392 EMNNKMIGTKPLY 404
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FGTVLS +V+ + ETG S+G G++ + +A+NAI A+
Sbjct: 139 IFIKNLDEAIDNKALHDTFAAFGTVLSCKVATD-ETGRSKGYGFVHYETAEAAENAIKAV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + + F LYV NL V ++
Sbjct: 198 NGMLLNDKKVYVGHHISRKERQSKLEEM----RAQFT-----NLYVKNLDPEVTQDEFIE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F ++G V SA + D +G+ ++ FGF++F + E A+
Sbjct: 249 LFKKYGNVTSAVISVDEEGK-SKGFGFVNFETHDEAQKAV 287
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 51 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL A+ + L +
Sbjct: 111 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDEAIDNKALHD 155
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FGTV+S +V D G+ ++ +GF+ + +++A +A ++NG +
Sbjct: 156 TFAAFGTVLSCKVATDETGR-SKGYGFVHYETAEAAENAIKAVNGML 201
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 213 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 271
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 272 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 328
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 329 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 382
Query: 277 LF 278
L+
Sbjct: 383 LY 384
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 121 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 178
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 179 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 229 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 273
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 262 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 321
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 322 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 379
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 380 TKPLYVALAQRKEER 394
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG V V +PL
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 134 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 192
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 193 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 249
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 250 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 303
Query: 277 LF 278
L+
Sbjct: 304 LY 305
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 42 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 99
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 100 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 149
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 150 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 194
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 183 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 242
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 243 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 300
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 301 TKPLYVALAQRKEER 315
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 330
Query: 277 LF 278
L+
Sbjct: 331 LY 332
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 210 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 328 TKPLYVALAQRKEER 342
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A++ +
Sbjct: 168 IYVKNLQVDVDERGLQDLFSQFGKMLSVKVMRD-SSGHSRGFGFVNFEKHEEAQKAVVHM 226
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G +V GR + V + R + K ++ Y+ + LYV NL ++ E L
Sbjct: 227 NGKEVSGRLLYVGRAQKRLERQNELKRRFEQMKQDRLNRYQGVN-LYVKNLDDSINDEKL 285
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +PL+
Sbjct: 286 RKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKPLY 339
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + ++A+ AI +
Sbjct: 76 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHDAAQRAISTM 133
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V L++
Sbjct: 134 NGMLLNDRKV---FVGHFKSR-REREAELGARVMEFT-----NIYVKNLQVDVDERGLQD 184
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A + +NG
Sbjct: 185 LFSQFGKMLSVKVMRDSSGH-SRGFGFVNFEKHEEAQKAVVHMNG 228
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G +LS+ V R+ T S Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPILSIRVCRDVATRRSLCYAYINFQQPADAERALDTMNFEVIKGQPIRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S R+ S IF+ NL ++ + L + F FG ++S +V+
Sbjct: 62 S------QRDPGLRKSGVGNIFIK---------NLEDSIDNKALYDTFSTFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
D G +R FGF+ F + DA + A ++NG +
Sbjct: 107 CDEHG--SRGFGFVHFETHDAAQRAISTMNGML 137
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S + +L + F P+G + S +V E G S+G G++ S A
Sbjct: 264 NRYQGVNLYVKNLDDSINDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEA 321
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 322 TKAVTEMNGRIVGTKPLYVALAQRKEER 349
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 14/195 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 219 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 275
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 276 YEHHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LY+ NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 334 LYIKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 392
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 393 NGKM----IGTKPLY 403
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 138 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 197 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLN 264
FG +S + D KG ++ FGF+++ ++ R A LN
Sbjct: 248 LVKPFGPTISVALSRDEKG-VSKGFGFVNYEHHESARKAVDELN 290
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 110 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG +
Sbjct: 155 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGML 200
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 97/181 (53%), Gaps = 10/181 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D +L EMF+ +G + S V + +TG SRG G+++ + ++A+ A+ L
Sbjct: 194 VYVKNFGEELDDGKLKEMFEVYGKITSARVMTD-QTGKSRGFGFVSFENPDNAEQAVKEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+ ++G G+++ V + R + + K ++ Y+ + LYV NL + E
Sbjct: 253 NDKELGNGKKIYVGRAQKKAERLSDLKRKFEQLKMERMTRYQGVN-LYVKNLDDVIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D G ++ FGF+ FSS E A++ +NG + + +PL
Sbjct: 312 LRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSPEEATKAVTEMNGRI----IVQKPL 367
Query: 278 F 278
+
Sbjct: 368 Y 368
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L E F G VLS+ V R+ + S G Y+ A+ A+ +
Sbjct: 13 LYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + R MR+ +S R+ S +F+ NL + + + +
Sbjct: 73 NFEPLKNRPMRIMWS------QRDPSLRKSGVGNVFIK---------NLHKDIDNKAIFD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
F FG ++S RV D +G +R +GF+ F + +A +A +NG + + F
Sbjct: 118 TFSAFGNILSCRVATDEQG-NSRGYGFVHFETEEAANEAINKVNGMLLNEKKVF 170
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +R + LYV NL D L F P+GT+ S +V + S+G G++ S
Sbjct: 288 ERMTRYQGVNLYVKNLDDVIDDERLRREFAPYGTITSAKVMMDSTGARSKGFGFVCFSSP 347
Query: 152 NSAKNAIIALDG 163
A A+ ++G
Sbjct: 348 EEATKAVTEMNG 359
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ + R+ T S G Y+ ++ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPRDSERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L+E+FKPFGT+L+V V R+ T S G GY+ + +SA A+ AL
Sbjct: 24 LYVGDLDPIVTEPHLVELFKPFGTILNVRVCRDIITQRSLGYGYINFNNHDSAAKAMEAL 83
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + MR+ + Y ++V NL V +L
Sbjct: 84 NFKRVGDKCMRI---------------MWQQRDPALRYSGNGNVFVKNLKNEVDSRELGA 128
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNG 265
F +FG ++S +V+ D +G+ +R +GF+ F +D A ++A ++NG
Sbjct: 129 IFKKFGDILSCKVMEDEEGK-SRGYGFVHFKNDNAAKEAIENMNG 172
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D EL +FK FG +LS +V + E G SRG G++ + N+AK AI +
Sbjct: 112 VFVKNLKNEVDSRELGAIFKKFGDILSCKVMED-EEGKSRGYGFVHFKNDNAAKEAIENM 170
Query: 162 DG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D E ++ + N RNA + + +Y+ + V E +
Sbjct: 171 NGDKDHADEEKKMGLYV-ANFIRRNARLAT-------LVANFTNVYIKQVLPTVDKEVIE 222
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269
F RFG + S+ D+ G RVF F +F + DA ++ + E
Sbjct: 223 KFFSRFGGITSSATCKDKNG---RVFAFCNF--EKHEDAVKAIEASHEQ 266
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 186 AEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+E LI+ +K ++ + LYV N E+L F +G + S RV+ D G +R
Sbjct: 287 SERLIALRQKYMQCQTLGNNLYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDANG-NSR 345
Query: 245 VFGFISFSSDAERDAAL-SLNGTV 267
FGF+SF + + +AAL +NG +
Sbjct: 346 GFGFVSFGNADQANAALREMNGRM 369
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N F L E+FK +G + S V + G SRG G+++ G+ + A A+ +
Sbjct: 307 LYVRNFDPEFTEENLHELFKEYGVIRSCRVMTDA-NGNSRGFGFVSFGNADQANAALREM 365
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G + G+ + V + + R
Sbjct: 366 NGRMLNGKPLIVNIAQRRDQR 386
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERVSEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNDRKV---FVGRFKSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 156 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 214
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 215 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 271
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 272 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 325
Query: 277 LF 278
L+
Sbjct: 326 LY 327
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 64 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 121
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 122 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 171
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 172 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 216
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 205 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 264
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 265 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 322
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 323 TKPLYVALAQRKEER 337
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 89/168 (52%), Gaps = 9/168 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + L +F +GTV SV V R+ G SRG G++ +AK A+ +L
Sbjct: 202 VYVKNLIENITEDILHRLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCHPENAKKAVDSL 260
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK---LYVGNLSWAVKPED 218
G VG + + V ++ + R E L + F+ +S + LYV NLS ++
Sbjct: 261 HGRQVGSKTLFVGKALKRDERR---EMLKHKYRDNFIAKSNMRWSNLYVKNLSESMNDTT 317
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
LR FGR+G +VSA+V+ G+ ++ FGF+ FS+ E + A LNG
Sbjct: 318 LREIFGRYGQIVSAKVMRHENGR-SKGFGFVCFSNREESKQAKRYLNG 364
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R R LYV NL S S L MF PFG +LS +V E G S+G G++ + S
Sbjct: 104 RRRTGFGNLYVKNLDISITSSGLERMFNPFGVILSCKVVE--ENGQSKGFGFVQFETEQS 161
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A A AL GS V G+++ V I+ N R A K F +YV NL
Sbjct: 162 AVTARSALHGSMVDGKKLFVAKFINKNERVAMA------GNKGFT-----NVYVKNLIEN 210
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+ + L F ++GTV S V+ D G+ +R FGF++F + + A SL+G
Sbjct: 211 ITEDILHRLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCHPENAKKAVDSLHG 262
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 21/199 (10%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ ++E + + LYV +L +L+ F VLSV + RN TG S Y
Sbjct: 7 ETQALENHQHSSMFASLYVGDLSPDVTEQDLIHRFSLTVPVLSVHLCRNSVTGKSLCYAY 66
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHK 204
+ S SA NA+ L+ +D+ G+ MR+ +S D++ R R
Sbjct: 67 INFDSPFSASNAMARLNHTDLKGKAMRIMWSQRDLSYRRRTGFG---------------N 111
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYV NL ++ L F FG ++S +V+ + GQ ++ FGF+ F ++ +A++
Sbjct: 112 LYVKNLDISITSSGLERMFNPFGVILSCKVV-EENGQ-SKGFGFVQFETE---QSAVTAR 166
Query: 265 GTVESHTVAFQPLFPFNYV 283
+ V + LF ++
Sbjct: 167 SALHGSMVDGKKLFVAKFI 185
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+S R LYV NL S + + L E+F +G ++S +V R+ E G S+G G++ +
Sbjct: 296 KSNMRWSNLYVKNLSESMNDTTLREIFGRYGQIVSAKVMRH-ENGRSKGFGFVCFSNREE 354
Query: 154 AKNAIIALDGSDVGGREMRVR 174
+K A L+G V G+ + VR
Sbjct: 355 SKQAKRYLNGFSVDGKLLVVR 375
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDEHLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDVM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 330
Query: 277 LF 278
L+
Sbjct: 331 LY 332
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 314
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G V + + V + R
Sbjct: 315 TKAVTEMNGRIVATKPLYVALAQRKEER 342
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|326512018|dbj|BAJ95990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 830
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 12/178 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L F+ G VL +V + E G SRG GY+TM ++ A+ A+
Sbjct: 571 VYVRNLPYHLDNEGLKLNFQHAGVVLFSKVIYDREIGRSRGFGYVTMNTVQEAEKAVRIY 630
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS+V GR + V + A S SP +++V NL V L
Sbjct: 631 HGSEVHGRRLTVSIAAPRGGTWVGATRSQS--------GSPLRIFVCNLPSQVDNSRLEE 682
Query: 222 HFGRFGTVVSARVLHDRK--GQTTRVFGFISFSSDAERDAAL-SLNGTV-ESHTVAFQ 275
F + G VV ARV+++R+ +R FGF++ ++D E A+ +LN V E HT+ +
Sbjct: 683 LFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYKAIRALNKQVLEEHTLVVR 740
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEV--SRNPETGISRGCGYLTMGSINSAKN 156
P ++VCNLP D S L E+F G V+ V R SRG G++TM + +
Sbjct: 663 PLRIFVCNLPSQVDNSRLEELFNKHGQVVDARVIYERREGASCSRGFGFVTMATDEESYK 722
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSR 182
AI AL+ + + VR + + R
Sbjct: 723 AIRALNKQVLEEHTLVVRVARERPDR 748
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LSV V + +TG S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFGNYGPALSVRVMTD-DTGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG +
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI--- 357
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 358 -VATKPLY 364
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 197 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 255
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 256 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 312
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 313 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 366
Query: 277 LF 278
L+
Sbjct: 367 LY 368
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ + R+ T S G Y+ AK A+ L
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ +K V +++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWS------QRDPSL-----RKSGVGGGVGNIFIKNLDKSIDNKALYD 121
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 122 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 166
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 246 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 305
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 306 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 363
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 364 TKPLYVALAQRKEER 378
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLHKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|301115672|ref|XP_002905565.1| RNA binding protein, putative [Phytophthora infestans T30-4]
gi|262110354|gb|EEY68406.1| RNA binding protein, putative [Phytophthora infestans T30-4]
Length = 322
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 100/186 (53%), Gaps = 20/186 (10%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRG 142
V ++ VE ++ + +YV NL S +L + + G V L+ + N G S+G
Sbjct: 58 VRNEEDVEMEQTSSVGSRVYVGNLSWSIKGQDLKDHMQAAGPVDLATVLEWN---GRSKG 114
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE-ALISPPKKIFVYES 201
CG +T + +A+NAI L+ +++GGR++ VR R A+ + PK+ +
Sbjct: 115 CGIVTYATEEAAQNAIATLNDTELGGRKIFVR-------EDREAQPTATTKPKRGY---- 163
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
++YVGNLSW VK ++L++H GTVV A VL G+ ++ G + ++++ E A+
Sbjct: 164 --RVYVGNLSWNVKWQELKDHMKTAGTVVHADVLELANGR-SKGCGLVEYATEDEAAKAI 220
Query: 262 S-LNGT 266
+ LN T
Sbjct: 221 AELNNT 226
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NL + EL + K GTV+ +V G S+GCG + + + A A
Sbjct: 161 RGYRVYVGNLSWNVKWQELKDHMKTAGTVVHADVL-ELANGRSKGCGLVEYATEDEAAKA 219
Query: 158 IIALDGSDVGGREMRVRFSI--DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
I L+ +++ GR + VR + S ++ A+ +P +LYVGNL W
Sbjct: 220 IAELNNTELEGRLIFVREDREPEGGSISKFAKRASAPRGN----GEGRQLYVGNLPWDTN 275
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+ L++ F G V A + G+ +R FG I +++
Sbjct: 276 WQQLKDLFRTVGDVERADIAEYPDGR-SRGFGIIRYTN 312
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 239 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 297
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 298 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 354
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 355 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 408
Query: 277 LF 278
L+
Sbjct: 409 LY 410
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRVRFSIDMNS---------RTRNAEALISPPKKIFVYESPHKL------- 205
+G + +ID + T N + + P +I + L
Sbjct: 88 NGMLLNXXXXEAS-NIDSENVFPAAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN 146
Query: 206 -YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSL 263
++ NL ++ + L + F FG ++S +V+ D G ++ +GF+ F + +A A +
Sbjct: 147 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 204
Query: 264 NGTV 267
NG +
Sbjct: 205 NGML 208
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 288 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 347
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 348 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 405
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 406 TKPLYVALA 414
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL A+ E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDAIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATEP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG V+S +V+ D G ++ +GF+ F + +A A +NG
Sbjct: 118 TVSAFGNVLSCKVVCDENG--SKGYGFVHFGTREAAERAIEKMNG 160
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDAIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ V + R
Sbjct: 360 TEPLYVALAQRKEER 374
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 229 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 287
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 288 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 344
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 345 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 398
Query: 277 LF 278
L+
Sbjct: 399 LY 400
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 137 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 194
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 195 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 244
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 245 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 289
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 278 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 337
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 338 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 395
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 396 TKPLYVALAQRKEER 410
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNG 291
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A+ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G +G + V + + R ++I +E LY+ NL +V E L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG + + +PL+
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQG-LSRGFGFVAYSNPEEALRALSEMNGKM----IGKKPLY 403
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF+ NL ++ + L
Sbjct: 110 NYTPLFERPIRIMLS------NRDPSTRLSGKGNIFIK---------NLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + F
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GLSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFS 422
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFAPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+NAI +
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIRTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARALEFT-----NIYVKNLHVDVDERCLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F DA++ A +NG
Sbjct: 210 LFSQFGKILSVKVMRDDSGH-SRGFGFVNFEKHEDAQK-AVTDMNG 253
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQNAIRTMNGML 162
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 98/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ S R E L ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + + +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----LGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+ AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F RFG ++S +V+ D G +R FGF++F E + A + +NG
Sbjct: 210 LFSRFGKMLSVKVMRDDSGH-SRGFGFVNFQKHEEAQKAVMDMNG 253
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S R+ S IF + NL ++ + L
Sbjct: 71 TMNFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 116 YDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQQAITTMNGML 162
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G +G + + V + R
Sbjct: 347 TKAVTEMNGRILGTKPLYVALAQRKEER 374
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 91/167 (54%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +++ + +G+S+G G++ S SA+NAI
Sbjct: 121 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDSEESAQNAID 179
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R ++ E +S K F + +YV NLS + E+L
Sbjct: 180 KLNGMLINDKQVYVGHFL----RKQDRENALS--KTKF-----NNVYVKNLSESTTDEEL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG +GT+ SA ++ D G+ +R FGF++F + D A LNG
Sbjct: 229 MKFFGEYGTITSAVIMRDADGK-SRCFGFVNFENPDDAAKAVEGLNG 274
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E S+ + +YV NL S EL++ F +GT+ S + R+ + G SR G++ +
Sbjct: 203 ENALSKTKFNNVYVKNLSESTTDEELMKFFGEYGTITSAVIMRDAD-GKSRCFGFVNFEN 261
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----L 205
+ A A+ L+G V +E V + + R + + + + ES K L
Sbjct: 262 PDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRF----EQSIKESADKYQGVNL 317
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNG 265
Y+ NL + E L+ F +GT+ S +V+ D G R GF++FS+ E AL G
Sbjct: 318 YLKNLDDTISDEKLKEMFAEYGTITSCKVMRDPTG-IGRGSGFVAFSTPEEASRAL---G 373
Query: 266 TVESHTVAFQPLF 278
+ +A +PL+
Sbjct: 374 EMNGKMIAGKPLY 386
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL + +L EMF +GT+ S +V R+P TGI RG G++
Sbjct: 302 EQSIKESADKYQGVNLYLKNLDDTISDEKLKEMFAEYGTITSCKVMRDP-TGIGRGSGFV 360
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + G+ + V + R +A S
Sbjct: 361 AFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFS 405
>gi|344304396|gb|EGW34628.1| hypothetical protein SPAPADRAFT_57674 [Spathaspora passalidarum
NRRL Y-27907]
Length = 414
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 15/174 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+ G V+ V TG SRG GY+ + +SA+ A+
Sbjct: 174 PATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEKAL 233
Query: 159 IALDGSDVGGREMRVRFSIDM------NSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ + G ++ GR + + S N R + S P L++GNLS+
Sbjct: 234 VEMQGKEIDGRPINLDMSTGKPHASKSNDRAKQFGDTPSAPSDT--------LFIGNLSF 285
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ ++L FG+ GTV+S R+ Q + FG++ FSS E AAL +LNG
Sbjct: 286 NAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 339
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + L E+F GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 278 LFIGNLSFNAQRDNLFEIFGQHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 337
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 338 NGEYIEGRACRLDFS 352
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERD 258
+ P L+VG LSW + E L+ F G V+ ARV+ +R +R +G++ F + D+
Sbjct: 172 DEPATLFVGRLSWNIDDEWLKREFEHIGGVIGARVIMERSTGKSRGYGYVDFDNKDSAEK 231
Query: 259 AALSLNG 265
A + + G
Sbjct: 232 ALVEMQG 238
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 86/173 (49%), Gaps = 10/173 (5%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV NLP + ++L F+PFG V S V ++P + +RG G++ + A A+ L
Sbjct: 255 YVKNLPTQWTDADLRREFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLS 314
Query: 163 GSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVK 215
G G E+ V + R R K +I Y+ + LYV NL ++
Sbjct: 315 GKTFKGVNGVDLELYVGKAQKRTERERELRQKFDQLKLERINKYQGVN-LYVKNLDDLLQ 373
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
E+LR F +GT+ SARV+ D G +R FGF+ FS+ E A++ +NG +
Sbjct: 374 DEELREAFTNYGTITSARVMRDSTG-NSRGFGFVCFSTPEEAATAVAEMNGKL 425
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L + F FG +LS +V+ +P TG S+G GY+ + +A AI +
Sbjct: 166 IFVKNLDPSIDNKALYDTFSLFGNILSCKVANDP-TGQSKGYGYVHYETAEAATEAINKI 224
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ F R + E YV NL DLR
Sbjct: 225 NGMLIAGTEV---FVGHFQKRQERPD-----------IEDWTNCYVKNLPTQWTDADLRR 270
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
F FG V SA V+ D T R FGF+++ +D A L+G
Sbjct: 271 EFEPFGQVNSAVVMKDPNSATNRGFGFVNYEDADGAHAAVEGLSG 315
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+SV P + LYV ++ + L E+F G V S+ V R+ T S G Y+
Sbjct: 64 ASVSGPVQPFQTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVN 123
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++ A+ A+ ++ + + G R+ +S R+ S IFV
Sbjct: 124 FHNLVDAERALDTMNFTCIKGVPCRIMWS------QRDPSLRKSGVGNIFVK-------- 169
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S +V +D GQ ++ +G++ + +++A +A +NG
Sbjct: 170 -NLDPSIDNKALYDTFSLFGNILSCKVANDPTGQ-SKGYGYVHYETAEAATEAINKINGM 227
Query: 267 VESHTVAF 274
+ + T F
Sbjct: 228 LIAGTEVF 235
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL EL E F +GT+ S V R+ TG SRG G++ + A A+ +
Sbjct: 363 LYVKNLDDLLQDEELREAFTNYGTITSARVMRD-STGNSRGFGFVCFSTPEEAATAVAEM 421
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA 188
+G + G+ + V F+ R EA
Sbjct: 422 NGKLITGKPVYVAFAQRKEVRRAQLEA 448
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 238 VYIKNFGEDMDDERLKDLFGKFGPALSVKVVTD-ESGKSKGFGFVSFERHEDARKAVDEM 296
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 297 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 355
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 356 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 409
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 146 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 203
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 204 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 253
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF + R A +NG
Sbjct: 254 DLFGKFGPALSVKVVTDESGK-SKGFGFVSFERHEDARKAVDEMNG 298
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 287 EDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 346
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 347 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 404
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 405 TKPLYVALAQRKEER 419
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G +R FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSRGFGFVCFSSPEEATKAVTEMNGII----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G SRG G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSRGFGFVCFSSPEEATKAVTEMNGIIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVSLA 368
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 360 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 418
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 419 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 475
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 476 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 529
Query: 277 LF 278
L+
Sbjct: 530 LY 531
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 268 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 325
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + K F +Y+ N + E L++
Sbjct: 326 NGMLLNDRKV---FVGRFKSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLKD 376
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF + A+ +NG
Sbjct: 377 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNG 420
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 409 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 468
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 469 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 526
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 527 TKPLYVALAQRKEER 541
>gi|145348372|ref|XP_001418624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578854|gb|ABO96917.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 151
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 75/138 (54%), Gaps = 16/138 (11%)
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
TG SRG ++T+ S + A+ A +G DV GRE+RV S+ + A P ++
Sbjct: 5 TGRSRGFAFVTLASAEDMERAMAATNGVDVDGRELRV-------SQAQTAGERRDRPMRM 57
Query: 197 FVYESPHK--------LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
P + +Y GNLSW + DL++ G FG+V +R++ DR+ +R FGF
Sbjct: 58 DGERRPQRNRDADNRRVYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGF 117
Query: 249 ISFSSDAERDAALS-LNG 265
++ SS+AE D ++ LNG
Sbjct: 118 VTMSSEAEADEVVAQLNG 135
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y NL D +L ++ FG+V + + ETG SRG G++TM S A + L
Sbjct: 74 VYFGNLSWGMDHLDLQDLCGEFGSVEDSRLITDRETGRSRGFGFVTMSSEAEADEVVAQL 133
Query: 162 DGSDVGGREMRV 173
+G DV GR +RV
Sbjct: 134 NGQDVDGRVLRV 145
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 168 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 227 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN-LYVKNLDDGIDDERL 285
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 286 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 339
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 76 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 133
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 134 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 184 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 228
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G +LS+ V R+ T S G Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S R+ S IF + NL ++ + L + F FG ++S +V+
Sbjct: 62 S------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYDTFSAFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
D G ++ +GF+ F + +A A +NG +
Sbjct: 107 CDENG--SKGYGFVHFETQEAAERAIEKMNGML 137
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 217 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 276
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 277 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 334
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 335 TKPLYVALAQRKEER 349
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D +L + F P+G + S +V E G S+G G++ S A A+ +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEM 353
Query: 162 DGSDVGGREMRVRFSIDMNSR 182
+G VG + + V + R
Sbjct: 354 NGRIVGTKPLYVALAQRKEER 374
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL + E ++F+ FG V S V + E G S+G G++ A+
Sbjct: 226 RAQFTNIYVKNLDPEVSLEEFTQLFEQFGNVTSA-VIQTDEEGNSKGFGFVNFEFHEEAQ 284
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
NA+ L ++ GR++ V + R K K+ Y+ + LY+ NL
Sbjct: 285 NAVDGLHDTEYNGRKLFVSRAQKKAEREEELRKSYEHAKMEKMSKYQGVN-LYIKNLDDE 343
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273
+ E LR F FGT+ SA+V+ D KG +++ FGF+ FSS E A++ + + +
Sbjct: 344 IDDERLRAEFEPFGTITSAKVMRDEKG-SSKGFGFVCFSSPDEATKAVA---EMNNKMIG 399
Query: 274 FQPLF 278
+PL+
Sbjct: 400 AKPLY 404
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 51 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 110
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 111 NYSLIKGRACRIMWSQRDPALRKTGQG---------------NIFIKNLDEAIDNKALHD 155
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG V+S +V D +G+ ++ +GF+ + +++A A ++NG +
Sbjct: 156 TFAAFGNVLSCKVATDEQGR-SKGYGFVHYETAEAAETAIKAVNGML 201
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D L F+PFGT+ S +V R+ E G S+G G++ S
Sbjct: 325 EKMSKYQGVNLYIKNLDDEIDDERLRAEFEPFGTITSAKVMRD-EKGSSKGFGFVCFSSP 383
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 384 DEATKAVAEMNNKMIGAKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 433
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 98/188 (52%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + ++G S+G G+++
Sbjct: 172 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DSGKSKGFGFVSFERHED 230
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 231 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 289
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG +
Sbjct: 290 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI--- 344
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 345 -VATKPLY 351
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 88 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 145
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + + F +Y+ N + E L+
Sbjct: 146 NGMLLNDRKVFVGRF----KSR-KEREAELGARAREFT-----NVYIKNFGEDMDDEKLK 195
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
F ++G +S RV+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 196 ELFSKYGPALSIRVMTDDSGK-SKGFGFVSFERHEDAQK-AVDDMNG 240
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 115 ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174
E + F P G +LS+ V R+ T S G Y+ A+ A+ ++ + GR +R+
Sbjct: 13 EAQQDFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPLRIM 72
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S R+ S IF + NL ++ + L + F FG ++S +V
Sbjct: 73 WS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYDTFSAFGNILSCKV 117
Query: 235 LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 VCDENG--SKGYGFVHFETHEAAERAIEKMNGML 149
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGK+ VG + + E R +R + LYV NL
Sbjct: 229 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 288
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 289 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 346
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 347 TKPLYVALAQRKEER 361
>gi|260943806|ref|XP_002616201.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
gi|238849850|gb|EEQ39314.1| hypothetical protein CLUG_03443 [Clavispora lusitaniae ATCC 42720]
Length = 419
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/178 (34%), Positives = 87/178 (48%), Gaps = 7/178 (3%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P + P L+V L + D L F+ G V+S V TG SRG GY+ S
Sbjct: 172 ETPEASEEPATLFVGRLSWNVDDEWLKREFEEAGGVISARVMIERSTGKSRGYGYVDFSS 231
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF-VYESPHK-LYVG 208
+A+ A+ L G ++ GR + ++DM++ A KK V +P L++G
Sbjct: 232 KAAAEKALNELQGKEIDGRPV----NLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIG 287
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
NLS+ + L FG +GTVVS R+ Q + FG++ FSS E AL SLNG
Sbjct: 288 NLSFNTERNKLFEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNG 345
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 72/128 (56%), Gaps = 17/128 (13%)
Query: 71 DEINGKDNVGGNEVDDDSSVEEPRS-----RAR--------PCE-LYVCNLPRSFDISEL 116
+E+ GK+ + G V+ D S +P++ RA+ P + L++ NL + + ++L
Sbjct: 240 NELQGKE-IDGRPVNLDMSTGKPKTPASNDRAKKFGDVPSAPSDTLFIGNLSFNTERNKL 298
Query: 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F +GTV+S + +P+T +G GY+ S+ A+NA+ +L+G + GR R+ FS
Sbjct: 299 FEIFGEYGTVVSCRLPTHPDTQQPKGFGYVQFSSVEEAQNALNSLNGEYLDGRPCRLDFS 358
Query: 177 I--DMNSR 182
D N+R
Sbjct: 359 TPRDNNAR 366
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 95/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPTLSVKVMTD-QSGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL A+ E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVN-LYVKNLDDAIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITPHSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG V+S +V+ D G ++ +GF+ F + +A A +NG
Sbjct: 118 TVSAFGNVLSCKVVCDENG--SKGYGFVHFETREAAERAIEKMNG 160
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGGN--------EVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A DE+NGK+ G +V+ + + ++ +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDAIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 21/190 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPH---------KLYVGN 209
+G D+ G+++ R + ++ + ++ + K + + P LYV N
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPK-IEQVPQDRSVRCQGVNLYVKN 310
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
L + E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG +
Sbjct: 311 LDDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI- 367
Query: 269 SHTVAFQPLF 278
VA +PL+
Sbjct: 368 ---VATKPLY 374
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IFV NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNG 291
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG + +
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNGKM----IGR 399
Query: 275 QPLF 278
+PL+
Sbjct: 400 KPLY 403
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF+ NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIFIK---------NLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + F
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNG 291
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A+ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G +G + V + + R ++I +E LY+ NL +V E L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG + + +PL+
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNGKM----IGRKPLY 403
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF+ NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIFIK---------NLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + F
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
A+ ++G +G + + + ++ R A I P
Sbjct: 387 RALSEMNGKMIGRKPLYI--ALAQRKEDRRAHLQIRAP 422
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTR--------NAEALISPPKKIFVYESPHKLYVGNL 210
+G D+ G+++ R + ++ + + + + P+ V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVES 269
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG +
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGKI-- 367
Query: 270 HTVAFQPLF 278
VA +PL+
Sbjct: 368 --VATKPLY 374
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL RS D L + F FG +LS +V + E G S+G G++ + A+ AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + ++ V RF + R R AE + K F +Y+ NL + E L+
Sbjct: 159 NGMFLNDHKVFVGRFK---SRRDRQAE--LGARAKEFT-----NVYIKNLGEDMDDERLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
+ FGRFG +S +V+ D G+ ++ FGF+SF + R A +NG
Sbjct: 209 DLFGRFGPALSVKVMTDESGK-SKGFGFVSFERHEDARKAVEEMNG 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IFV NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 19/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFGRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVEEM 251
Query: 162 DGSDVGGREM-------RVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNL 210
+G D+ G+++ +V ++ + ++ + P+ V LYV NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKIERVPQDRSVRCKGVNLYVKNL 311
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVES 269
+ E LR F FGT+ SA+V + G ++ FGF+ FSS E A++ +NG +
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTME--GGRSKGFGFVCFSSPEEATKAVTEMNGKI-- 367
Query: 270 HTVAFQPLF 278
VA +PL+
Sbjct: 368 --VATKPLY 374
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL RS D L + F FG +LS +V + E G S+G G++ + A+ AI +
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + ++ V RF + R R AE + K F +Y+ NL + E L+
Sbjct: 159 NGMFLNDHKVFVGRFK---SRRDRQAE--LGARAKEFT-----NVYIKNLGEDMDDERLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
+ FGRFG +S +V+ D G+ ++ FGF+SF + R A +NG
Sbjct: 209 DLFGRFGPALSVKVMTDESGK-SKGFGFVSFERHEDARKAVEEMNG 253
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G + + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRITRRSLGYASVNFQQLEDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IFV NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWS------QRDPSLRKSGVGNIFVK---------NLDRSIDSKTLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V+ D G ++ +GF+ F + E + A+ +NG
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEEAERAIEKMNG 160
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-VSGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A+NAI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R E + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREVELGARAMEFT-----NIYVKNLHVDVDEQRLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A +++NG
Sbjct: 210 LFSQFGKMLSVKVMRDVSGH-SRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF+ NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIFIK---------NLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A ++A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGML 162
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G VG + + V +
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALA 368
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNG 291
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG + +
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNGKM----IGR 399
Query: 275 QPLF 278
+PL+
Sbjct: 400 KPLY 403
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF+ NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIFIK---------NLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + F
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL ++ D L + F FG++LS +V+ + G S G G++ + SAKNAI L
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGSILSCKVATD-SLGQSLGYGFVQFDNEESAKNAIDKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + E+ I K F + +YV NLS EDL+
Sbjct: 178 NGMLLNDKQVYVGPFL----RKQERESAID--KATF-----NNVYVKNLSETTTEEDLKK 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG +GT+ SA V+ D G+ +R FGF++F + D + +LNG
Sbjct: 227 IFGEYGTITSAVVMRDGNGK-SRCFGFVNFENPDDAAQSVEALNG 270
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +GT+ S V R+ G SR G++ + + A ++ AL
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGTITSAVVMRD-GNGKSRCFGFVNFENPDDAAQSVEAL 268
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R + K V + LYV NL ++ + L+
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKFQGLNLYVKNLDDSITDDKLK 328
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ S +V+ D G +R GF++FS+ E AL+ +NG + V +PL+
Sbjct: 329 ELFSEFGTITSCKVMRDPNG-VSRGSGFVAFSTAEEASRALTEMNGKM----VVSKPLY 382
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F FGT+ S +V R+P G+SRG G++
Sbjct: 298 EQTLKETVDKFQGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL-----------ISPPKK 195
+ A A+ ++G V + + V + R +A I P
Sbjct: 357 AFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPAMAPPIGPRMP 416
Query: 196 IFVYESP---HKLYVGNLSWAVKP 216
I+ +P H+L+ G A+ P
Sbjct: 417 IYPPGTPGIGHQLFYGQGPPAIVP 440
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS A ++L+
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEATTDDELKT 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG
Sbjct: 244 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNG 287
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKF---DGLNLYVKNLDDTVTDE 342
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG + V +P
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKM----VGGKP 397
Query: 277 LF 278
L+
Sbjct: 398 LY 399
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 425
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQM--KQDRLRRYQGVN-LYVKNLDDSIDDD 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRV 173
A+ ++G VG + + V
Sbjct: 348 KAVTEMNGRIVGTKPLYV 365
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS A ++L+
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEATTDDELKT 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG
Sbjct: 244 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNG 287
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + + A+ A+
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 150
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG V
Sbjct: 151 HEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKF---DGLNLYVKNLDDTVTDE 342
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG + V +P
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKM----VGGKP 397
Query: 277 LF 278
L+
Sbjct: 398 LY 399
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 425
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 87/179 (48%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S D EL E+F FG + + V R E G S+ G++ SA AI +
Sbjct: 196 IYVKNLDASVDEKELSEVFSKFGEIQNAVVMRG-ENGASKEFGFINFADHASALIAIDEM 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+ D +++ V + N R + K K+ Y+ + LYV NL +V E L
Sbjct: 255 NEKDFKNKKLFVGRAQKKNERRAKLKEYFQKLKQEKVNKYKGLN-LYVKNLDDSVDDERL 313
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F +FG + SA+V+ D K +R FGF+ F + + AL+ + H + +PL+
Sbjct: 314 RQEFSKFGDITSAKVMSDNK--QSRGFGFVCFKTPEAANKALT---EMSGHMIGSKPLY 367
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 20/162 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI-------SRGCGYLTMGSINSA 154
+++ NL +S D L + F FG +LS +V + + G S G G++ + +A
Sbjct: 96 IFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGDNVESAGYGFVHFETQEAA 155
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWA 213
+ AI ++G + G+++ V + R KI E S +YV NL +
Sbjct: 156 EKAIAKINGMLLNGKQVFVGPFVKKTERL-----------KILSNEDSFTNIYVKNLDAS 204
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
V ++L F +FG + +A V+ G ++ FGFI+F+ A
Sbjct: 205 VDEKELSEVFSKFGEIQNAVVMRGENG-ASKEFGFINFADHA 245
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ M V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|255730137|ref|XP_002549993.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240131950|gb|EER31508.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 442
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 7/170 (4%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+ G V+ V TG SRG GY+ + A+ A+
Sbjct: 214 PATLFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGKSFAEKAL 273
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKP 216
+ G ++ GR + ++DM++ +A K+ +SP L++GNLS+
Sbjct: 274 AEMQGKEIDGRPI----NLDMSTGKPHASKSNDRAKQFGDSQSPPSDTLFIGNLSFNANR 329
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L N FG +G V+S R+ Q + FG++ FSS E AAL +LNG
Sbjct: 330 DGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 379
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L F +G V+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 318 LFIGNLSFNANRDGLFNTFGEYGNVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 377
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 378 NGQYIEGRPCRLDFS 392
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
K E P L+VG LSW + + L+ F G V+ ARV+ +R +R +G++ F
Sbjct: 207 KAATDEEPATLFVGRLSWNIDDDWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFEGK 266
Query: 255 AERDAALS 262
+ + AL+
Sbjct: 267 SFAEKALA 274
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGDEMDDEKLRELFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ M V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 312 KEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|301106378|ref|XP_002902272.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098892|gb|EEY56944.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 528
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 83/172 (48%), Gaps = 5/172 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+++V LP D + L E FKPFG + +V + +TG SRG G++T +A +A+
Sbjct: 12 KVFVAGLPVHVDDNALYEKFKPFGEMHQSKVVYDQKTGRSRGFGFVTFCEYTNALDAVDQ 71
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-----KLYVGNLSWAVK 215
L+ S R + VRF N + K+ P +YVGNL++ +
Sbjct: 72 LNQSKWEKRTLNVRFLQPKNGSDAGGNGAAAIAKRPTKVIGPRPEGCTTIYVGNLAYDIT 131
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
E LR F + G++ + R + + R FG++ F + +AA+ L+G V
Sbjct: 132 EEVLRKVFDKCGSIRAVRFAEHIQTKEFRGFGYVQFHEEGPCEAAVKLDGMV 183
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ ++G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVTDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++ E
Sbjct: 252 NGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRLTRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRREFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A+ AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDNHG--SRGFGFVHFETHEAAQQAIVTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +FG ++S +V+ D G +R FGF++F E A++ +NG
Sbjct: 210 LFSQFGKMLSVKVMRDDSGH-SRGFGFVNFEKHEEAQKAVTDMNG 253
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S R+ S IF + NL ++ + L
Sbjct: 71 TMNFEVIRGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ F FG ++S +V+ D G +R FGF+ F + +A + A +++NG +
Sbjct: 116 YDTFSTFGNILSCKVVCDNHG--SRGFGFVHFETHEAAQQAIVTMNGML 162
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVG--------------GNEVDD--DSSVEEPR 94
H GF V EEA ++NGK+ G NE+ + ++
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQMKQDRL 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRREFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL S D L EMF FGT+LS +V+ + G S+G G++ + SA++AI
Sbjct: 125 ANLFVKNLEPSIDSKNLYEMFSSFGTILSCKVATD-SAGQSKGYGFVQYETEESAQDAIN 183
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G REM V ++ R RN E + +Y+ NL +DL
Sbjct: 184 RLNGMLANDREMFV----GLHMRRRNREVKFT------------NVYIKNLPTEFSDDDL 227
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
R F FG + SA V+ D G ++ FGF++F
Sbjct: 228 RQEFAPFGEITSAVVMRDVNG-VSKCFGFVNF 258
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S D ++L +F ++SV V R+ +G+S G GY+ S A A+ AL
Sbjct: 39 LYVGDLAESVDETQLHAVFSQVAPLVSVRVCRDIVSGVSLGYGYVNFYSRQEATCALEAL 98
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +RV FS S ++ A L+V NL ++ ++L
Sbjct: 99 NFAPLSGKHIRVMFSNRDPSLRKSGRA---------------NLFVKNLEPSIDSKNLYE 143
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FGT++S +V D GQ ++ +GF+ + + ++ +DA LNG +
Sbjct: 144 MFSSFGTILSCKVATDSAGQ-SKGYGFVQYETEESAQDAINRLNGML 189
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLP F +L + F PFG + S V R+ G+S+ G++ A A+
Sbjct: 213 VYIKNLPTEFSDDDLRQEFAPFGEITSAVVMRD-VNGVSKCFGFVNFEKPEFALEAVKKA 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G + + + V + R + + + P+ LY+ N+ ++ E L
Sbjct: 272 NGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRDKKVDKPNGINLYLKNIDDSINDEGL 331
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTVESHTVAFQPLF 278
+ F FG V S +V+ D +G+ ++ GF+ F+ ++A A +NG + V +PL+
Sbjct: 332 KILFEEFGQVTSCKVMVDAQGR-SKGSGFVLFATAEAGHSAINGMNGRI----VGKKPLY 386
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSVE+ + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVELMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S ++ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVELMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ + G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + + Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRATRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A + +NG
Sbjct: 210 LFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNG 253
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPVRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATMNGML 162
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ S +V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRD-SSGRSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + ++ Y+ + LYV NL ++
Sbjct: 252 NGKEVSGRLLYASRAQKRVERQNELKRRFEQMKQ--DRLSRYQGVN-LYVKNLDDSIDDG 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GSHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G++LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDEHG--SRGFGFVHFETYEAAQQAINTMNGML 162
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
SR + LYV NL S D +L + F P+G + S +V E S+G G++ S A
Sbjct: 289 SRYQGVNLYVKNLDDSIDDGKLRKEFSPYGVITSAKVMT--EGSHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
+ S +EE +++ +YV N+ E +++F+PFG + S + + E G SRG G
Sbjct: 175 ERQSKIEEMKNQF--TNIYVKNVDPEVTQEEFVQLFEPFGRITSAVLQVDDE-GKSRGFG 231
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + A A+ AL SDV GR++ V + R K K+ Y+
Sbjct: 232 FVNFDTHEEAHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGV 291
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ LY+ NL + E LR F FG + SA+V+ D KG ++ FGF+ FSS E A++
Sbjct: 292 N-LYIKNLEDDIDDERLRGEFEPFGNITSAKVMRDEKG-ISKGFGFVCFSSPDEATKAVA 349
Query: 263 LNGTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 350 ---EMNNKMIGTKPLY 362
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A LYV L + + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 2 SAAPSASLYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADG 61
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ S + GR R+ +S + + + I ++ NL +
Sbjct: 62 ERALEQLNYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQI 106
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG V+S +V D G+ ++ +GF+ + +++A A ++NG +
Sbjct: 107 DNKALHDTFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAAETAIKAVNGML 159
>gi|126273923|ref|XP_001387749.1| nuclear localization sequence binding protein [Scheffersomyces
stipitis CBS 6054]
gi|126213619|gb|EAZ63726.1| nuclear localization sequence binding protein, partial
[Scheffersomyces stipitis CBS 6054]
Length = 245
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V+S V TG SRG GY+ S ++A+ A+
Sbjct: 2 PATLFVGRLSWNIDDEWLRREFEPLGGVISARVIMERATGKSRGYGYVDFDSKSAAEKAL 61
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
G ++ GR + + S T++ E S L++GNLS+ ++
Sbjct: 62 NEYQGRELDGRPINLDMSTGKPHVTKSTENRAKQYGDTPSAPS-DTLFIGNLSFNADRDN 120
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L N FG GTV+S R+ Q + FG++ FSS E AA+ +LNG
Sbjct: 121 LFNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEALNG 168
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + D L +F GTV+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 107 LFIGNLSFNADRDNLFNIFGVHGTVISCRIPTHPDTQQPKGFGYVQFSSVDEAKAAMEAL 166
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 167 NGEYIEGRACRLDFS 181
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ + G SRG G++ A+ A++ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSQFGKMLSVKVMRD-DIGHSRGFGFVNFEKHEEAQKAVMDM 251
Query: 162 DGSDVGGREM---RVRFSID-MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V GR + R + ++ N R E + + Y+ + LYV NL ++ E
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQ--DRATRYQGVN-LYVKNLDDSIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + SRG G++ + +A AI +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR R EA + F +YV NL V + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-REREAELGARAMEFT-----NIYVKNLHVDVDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F +FG ++S +V+ D G +R FGF++F E + A + +NG
Sbjct: 210 LFSQFGKMLSVKVMRDDIGH-SRGFGFVNFEKHEEAQKAVMDMNG 253
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPVRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R FGF+ F + +A A ++NG +
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAHQAIATMNGML 162
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEER 374
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V+RN + G SRG G++ + SA AI L
Sbjct: 192 VFVKNLNDHIDNVILQELFSKFGDILSCKVARN-DDGTSRGYGFVQFAAQESADIAIENL 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 251 NNSHFEGRQLHVAHFIKKSERSANNDDKYT------------NLYMKNLDDDMTEELIKL 298
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F +FG ++S +++ R T++ FGF+SF S D+ + A ++NG
Sbjct: 299 KFSQFGPLISVKIMK-RDDGTSKGFGFVSFKSPDSAKKAKEAMNG 342
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 5/163 (3%)
Query: 102 LYVCNLPRSFDISELLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LY+ NL EL+++ F FG ++SV++ + + G S+G G+++ S +SAK A A
Sbjct: 282 LYMKNLDDDM-TEELIKLKFSQFGPLISVKIMKR-DDGTSKGFGFVSFKSPDSAKKAKEA 339
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDL 219
++G +G + + V + R + + L + +I + +Y+ N+S V E L
Sbjct: 340 MNGIPLGSKSLYVARAQKKAERKQYLQLLHEEKRNEILTKSNGSNVYIKNISDRVDDETL 399
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
R F FG + S +++ D KG ++ FGF+ +++ E A+S
Sbjct: 400 RERFDEFGNITSVKIMRDDKG-ISKGFGFVCYNTPDEAKCAVS 441
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N+ D L E F FG + SV++ R+ + GIS+G G++ + + AK A+ ++
Sbjct: 385 VYIKNISDRVDDETLRERFDEFGNITSVKIMRD-DKGISKGFGFVCYNTPDEAKCAVSSM 443
Query: 162 DG 163
G
Sbjct: 444 RG 445
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 97/183 (53%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKDLFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++GG+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEIGGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 20/146 (13%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGN---------EVDDDSSV--------EEPRSR 96
GF V E+A +E+NGK+ +GG +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKE-IGGKVIFVGRAQKKVERQAELKRKFEQLKQERISR 290
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATK 348
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 349 AVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 22/192 (11%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA LY+ NLP EL EMF +G V S V + E+G RG G++ + SA
Sbjct: 234 RAHFTNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQAD-ESGKHRGFGFVNYENHESAS 292
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYV 207
A+ AL D G + R + ++ ++ R A YE+ K LY+
Sbjct: 293 KAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQK-------YETTLKYQGVNLYI 345
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
NL E L+ F FGT+ S +V+ D KG +R FGF+ FS+ D A +NG
Sbjct: 346 KNLDDEYDDEKLQAEFLPFGTITSCKVMKDDKG-VSRGFGFVCFSAPDEATKAVAEMNGK 404
Query: 267 VESHTVAFQPLF 278
+ + +PL+
Sbjct: 405 M----LGSKPLY 412
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + TG S+G G++ + SA+ AI +
Sbjct: 147 IFIKNLDETIDNKALHDTFAAFGDILSCKVAMD-STGASKGYGFVHYVTAESAEAAIKGV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + + + V + R +A I + F LY+ NL V E+L
Sbjct: 206 NGMQLNDKVVFVGIHVPRRER----QAKIDEVRAHFT-----NLYIKNLPTEVTTEELNE 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F ++G V SA V D G+ R FGF+++ +
Sbjct: 257 MFSKYGPVTSAAVQADESGK-HRGFGFVNYEN 287
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 59 LYVGELDPTVTEAMLYEIFSMIGPVSSIRVCRDAVTRRSLGYAYVNYLNAADAERALEQL 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + R+ +S S + + I ++ NL + + L +
Sbjct: 119 NYSLIKNKACRIMWSQRDPSLRKTGQGNI---------------FIKNLDETIDNKALHD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ + + +AA+ +NG + V F
Sbjct: 164 TFAAFGDILSCKVAMDSTG-ASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVF 216
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG LSV+V + E+G S+G G++ A+ A+ +
Sbjct: 262 VYIKNFGEDMDDLRLKRLFGKFGPALSVKVMTD-ESGTSKGFGFVNFERHEDAQKAVEEM 320
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V + R R E L +I Y+ + LYV NL + E
Sbjct: 321 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQ--DRITRYQGVN-LYVKNLDDGIDDE 377
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 378 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 431
Query: 277 LF 278
L+
Sbjct: 432 LY 433
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + ++A+ AI +
Sbjct: 170 IFIKNLDKSIDNKALFDTFSAFGNILSCKVVCD-EHG-SKGYGFVHFETRDAAERAIDKM 227
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + L+
Sbjct: 228 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDLRLK 277
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G T++ FGF++F DA++ A +NG
Sbjct: 278 RLFGKFGPALSVKVMTDESG-TSKGFGFVNFERHEDAQK-AVEEMNG 322
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A +E+NGK+ VG + + E R +R + LYV NL
Sbjct: 311 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 370
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 371 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 428
Query: 168 GREMRVRFSIDMNSR 182
+ + + + R
Sbjct: 429 TKPLYIALAQRKEER 443
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 90/169 (53%), Gaps = 9/169 (5%)
Query: 98 RPCELYVCNLPRSFDISELL--EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R LY+ NL DISE L E F FG ++S+ V+++ G+S+G G++ + AK
Sbjct: 187 RYTNLYMKNL--DLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAK 243
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNLSWA 213
A+ ++G +G + + V + R + +K + Y+ + +YV N+
Sbjct: 244 RAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSN-IYVKNIDDN 302
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
V E LR+HF GT+ SA+++ D KG ++ FGF+ FS+ E + A++
Sbjct: 303 VSDEGLRDHFSVCGTITSAKIMRDDKG-ISKGFGFVCFSTPEEANKAVN 350
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 99/199 (49%), Gaps = 21/199 (10%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPC--ELYVCNLPRSFDISELLEMFKPFGTVLSV 129
E+ + G + S +P +R + C ++V NL S D S L +MFK FG +LS
Sbjct: 69 EVKNHSTLNGKAIRVMWSRRDPDAR-KSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSS 127
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEA 188
+V + E G S+G G++ + SA AI L+G VG +++ V +F + ++
Sbjct: 128 KVVMS-EDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKF-------VKKSDR 179
Query: 189 LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
+ S P + LY+ NL + LR F FG ++S V D G ++ FGF
Sbjct: 180 ISSGPDTRYT-----NLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNG-MSKGFGF 233
Query: 249 ISFSS--DAERDAALSLNG 265
++F + DA+R A ++NG
Sbjct: 234 VNFDNPEDAKR-AMETMNG 251
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ +P +G S+G G++ + SA+NAI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E + K F + +YV NLS + EDL
Sbjct: 165 KLNGMLINDKQVYV------GQFLRKQERETALNKTKF-----NNVYVKNLSESTTEEDL 213
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+N FG FG + S V+ D G+ ++ FGF++F +
Sbjct: 214 KNIFGEFGIITSVVVMRDGDGK-SKCFGFVNFEN 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V P A LYV +L + S+L ++F G VLSV V R+ T S G GY+
Sbjct: 6 AAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVN 65
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ L+ + + G+ +R+ +S S ++ A +++
Sbjct: 66 YSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------------NIFI 110
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S ++ D GQ ++ +GF+ F + ++ ++A LNG
Sbjct: 111 KNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQ-SKGYGFVQFDNEESAQNAIDKLNGM 169
Query: 267 V 267
+
Sbjct: 170 L 170
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + SV V R+ + G S+ G++ + + A A+ AL
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGD-GKSKCFGFVNFENADDAAEAVEAL 257
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V ++ ++ + R +++ K++ LY+ NL ++
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSM----KEVVDKFQGVNLYIKNLDDSIGD 313
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ L+ F FGT+ S +V+ D G +R GF++FS+ E AL+ +NG + V +
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRALTEMNGKM----VVSK 368
Query: 276 PLF 278
PL+
Sbjct: 369 PLY 371
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 287 EQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 345
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 346 AFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 390
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 4 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 62
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 63 NGKEISGKIIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 119
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 120 KLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 173
Query: 277 LF 278
L+
Sbjct: 174 LY 175
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 96 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSS 153
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G VG + + V
Sbjct: 154 PEEATKAVTEMNGRIVGSKPLYV 176
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 96/184 (52%), Gaps = 15/184 (8%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E+ ++F+P+G + S+ + ++ E G S+G G
Sbjct: 218 DRESKFEE--MKANFTNVYVKNIDLGFSEEEMRKLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV------RFSIDMNSRTRNAEALISPPKKIFV 198
++ S +A A+ L+ D+ G+++ V R I+ R A L +K+
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARL----EKLSK 330
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
Y+ + L+V NL ++ L F FGT+ SARV+ D G+ ++ FGF+ FSS E
Sbjct: 331 YQGVN-LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGK-SKGFGFVCFSSPEEAT 388
Query: 259 AALS 262
A++
Sbjct: 389 KAIT 392
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 81 GNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GNE +D + S + P + A LYV L S + + L E+F P G V S+ V R+ T
Sbjct: 33 GNEGEDAADSSQLPDTSA---SLYVGELNPSVNEALLFEIFSPVGQVSSIRVCRDAVTKK 89
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
S G Y+ + + AI L+ S + GR R+ +S S RN E I
Sbjct: 90 SLGYAYVNFHKLEDGEKAIEELNYSLIDGRPCRIMWSQRDPSLRRNGEGNI--------- 140
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERD 258
++ NL A+ + L + F FG ++S +V D +G ++ FGF+ + +++A +
Sbjct: 141 ------FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQG-NSKCFGFVHYETAEAAKA 193
Query: 259 AALSLNGTV 267
A ++NG +
Sbjct: 194 AIENVNGML 202
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+SL + K FGF +NF+ SH A ++V + D++
Sbjct: 258 TSLHLEKDAEGKSKGFGF------VNFE----------SHEAAVKAVEELNDKD------ 295
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
ING+ G +EE + S+ + L+V NL S D +L E F
Sbjct: 296 -INGQKLYVGRAQKKRERIEELKRQYEAARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEF 354
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S V + E G S+G G++ S A AI ++ G+ + V + +
Sbjct: 355 KPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKD 413
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 414 VRRSQLEQQIQ 424
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|342183460|emb|CCC92940.1| putative polyadenylate-binding protein 1 [Trypanosoma congolense
IL3000]
Length = 552
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L+E+F+P+GT+L+V V R+ T S G GY+ + NSA A+ +
Sbjct: 23 LYVGDLDPAISEPQLVEIFRPYGTILNVRVCRDIITQRSLGYGYVNYDNANSATKAMEEM 82
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ VG + +R+ + + R+ Y ++V NL V +L
Sbjct: 83 NFKRVGEKCIRIMW------QQRDP---------ALRYSGNGNVFVKNLKGEVDSRELSL 127
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTVESHTVAFQPLFPF 280
F +FG ++S +V+ D G +R +GF+ F D A + A S+NG E L+
Sbjct: 128 IFKKFGEILSCKVMDDESG-NSRGYGFVHFKDDNAAKSAIESMNGVTEYADEKKTALYVA 186
Query: 281 NYV 283
N++
Sbjct: 187 NFI 189
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 6/161 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ + + D + + + F FG + S + ++ R + + A AI
Sbjct: 205 VYIKQILPTVDKAIIEKFFSKFGGITSAAICKDKN---GRAFAFCNFEKHDDAVKAIEEF 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLR 220
+V G ++ R +E LI+ +K +S + LYV N +DL
Sbjct: 262 HDHEVEGVTQPGEKLYVQRAQPR-SERLIALRQKYMQCQSLGNNLYVRNFDPEFTEKDLN 320
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +G + S RV+ D G +R FGF+SF + + +AAL
Sbjct: 321 ELFKEYGVIRSCRVMTDANG-VSRGFGFVSFENADQANAAL 360
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ E+ E+F PFGTV S + ++ E G SRG ++ +A +I +L
Sbjct: 243 VYVKNIDLEASEEEVKELFTPFGTVTSFYLEKDAE-GKSRGFAFVNYEEHEAAVKSIESL 301
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+ D G+++ V + + R + + + +S L+V NL ++ E L+
Sbjct: 302 NDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIEKLTKSQGVNLFVKNLDDSIDDEKLK 361
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F FGT+ S +V+ D G+ ++ FGF+SFSS E A+S + H +A +PL+
Sbjct: 362 EEFQSFGTISSVKVMIDESGK-SKGFGFVSFSSPEEASRAIS---EMNQHMLAGKPLY 415
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ ++ + AI L
Sbjct: 62 LYVGELEPSINEALLFEIFSPIGQVSSIRVCRDALTKRSLGYAYVNYHNVKDGEKAIDEL 121
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V G+ +R+ +S ++ RN E +++ NL A+ + L +
Sbjct: 122 NYSVVKGQPIRIMWSQRDPAKRRNGEG---------------NVFIKNLHPAIDNKALHD 166
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D GQ ++ FGF+ F S AA+ ++NG +
Sbjct: 167 TFSAFGRILSCKVATDNFGQ-SKGFGFVHFESPEAAQAAIENVNGML 212
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 14/160 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + G S+G G++ S +A+ AI +
Sbjct: 150 VFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-NFGQSKGFGFVHFESPEAAQAAIENV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + E+ V + R E +I K F +YV N+ E+++
Sbjct: 209 NGMLLNNNEVYVGPHVARRDRQSKLEEVI----KSFT-----NVYVKNIDLEASEEEVKE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FGTV S + D +G+ +R F F+++ E +AA+
Sbjct: 260 LFTPFGTVTSFYLEKDAEGK-SRGFAFVNYE---EHEAAV 295
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++++ L+V NL S D +L E F+ FGT+ SV+V + E+G S+G G+++ S
Sbjct: 336 EKLTKSQGVNLFVKNLDDSIDDEKLKEEFQSFGTISSVKVMID-ESGKSKGFGFVSFSSP 394
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ + G+ + V + + R E I
Sbjct: 395 EEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQ 434
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + G S+G G+++ S
Sbjct: 307 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSR-GKSKGFGFVSFDS 365
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVG 208
+AK A+ ++G D+ G+ + V + R + + K+ I Y+ KLYV
Sbjct: 366 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGYQGV-KLYVK 424
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL + E LRN F FG+++ +V+ ++GQ ++ FGFI FSS DA + A + +NG
Sbjct: 425 NLDDTIDDEKLRNEFSSFGSIIRVKVMQ-QEGQ-SKGFGFICFSSLEDATK-AMIEMNG 480
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 131 AKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQVTRRSLGYAYVNFLQLTDA 190
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 191 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 235
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 236 DNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGRL 287
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSVEE-----PR 94
SR GF V E A +E+NG+D G +V+ + +++ R
Sbjct: 351 SRGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKR 410
Query: 95 SRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
R R +LYV NL + D +L F FG+++ V+V + + G S+G G++ S+
Sbjct: 411 ERIRGYQGVKLYVKNLDDTIDDEKLRNEFSSFGSIIRVKVMQ--QEGQSKGFGFICFSSL 468
Query: 152 NSAKNAIIALDGSDVGGR 169
A A+I ++G +G +
Sbjct: 469 EDATKAMIEMNGRFLGSK 486
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V + N R R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 68 VVED----EINGKDN-VGGNEVDDDSSVEEPR----------SRARPCELYVCNLPRSFD 112
VED E+NGK VG + ++ E R SR + LY+ NL + D
Sbjct: 247 AVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTID 306
Query: 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172
+L + F PFG++ S +V E G S+G G++ S A A+ ++G VG + +
Sbjct: 307 DEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 173 VRFS 176
V +
Sbjct: 365 VALA 368
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ + E E+F PFG V S + R+ E G SRG G++ + A+ A+ L
Sbjct: 235 VYVKNIDPEANDDEFRELFTPFGNVTSAVLQRD-EEGRSRGFGFVNFETHEEAQKAVDTL 293
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
SD GR++ V + + R K K+ Y+ + LY+ NL V E L
Sbjct: 294 HDSDFKGRKLFVSRAQKKSEREEELRRSYEQAKMEKMSKYQGVN-LYIKNLEDDVDDEKL 352
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R+ F FG + SA+V+ +G T++ FGF+ FSS E A++ + + + +PL+
Sbjct: 353 RDAFEPFGAITSAKVMRT-EGGTSKGFGFVCFSSPDEATKAVA---EMNNKMMGSKPLY 407
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 54 LYVGELDPTVSEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYFNAADGERALEQL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL A+ + L +
Sbjct: 114 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDDAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG V+S +V D G+ ++ +GF+ + ++ ++A+ ++NG +
Sbjct: 159 TFAAFGNVLSCKVATDEMGR-SKGYGFVHYETNEAAESAIKAVNGML 204
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L + F+PFG + S +V R E G S+G G++ S
Sbjct: 328 EKMSKYQGVNLYIKNLEDDVDDEKLRDAFEPFGAITSAKVMRT-EGGTSKGFGFVCFSSP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 387 DEATKAVAEMNNKMMGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 436
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 128 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 186
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 187 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 243
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 244 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 297
Query: 277 LF 278
+
Sbjct: 298 FY 299
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 36 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 93
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 94 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 143
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 144 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 188
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 177 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 236
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 237 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 294
Query: 168 GR 169
+
Sbjct: 295 TK 296
>gi|344231201|gb|EGV63083.1| hypothetical protein CANTEDRAFT_106956 [Candida tenuis ATCC 10573]
Length = 231
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V+S V TG SRG GY+ S A+ A+
Sbjct: 2 PATLFVGRLSWNIDDDWLKREFEPSGGVISARVIMERATGKSRGYGYVDFESKADAEKAL 61
Query: 159 IALDGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
G ++ GR + + S N R + ++S P L++GNLS+
Sbjct: 62 QDFQGKEIDGRPINLDLSTSKPQTPAKNDRAKKFGDVVSAPSDT--------LFIGNLSF 113
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L FG++G V+S R+ Q + FG++ + S E AAL +LNG
Sbjct: 114 NATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEALNG 167
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + +L E F +G V+S + +P+T +G GY+ GSI AK A+ AL
Sbjct: 106 LFIGNLSFNATRDKLFEAFGQYGEVISCRIPTHPDTQQPKGFGYVQYGSIEEAKAALEAL 165
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ +S
Sbjct: 166 NGEYIEGRPCRLDYS 180
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDP-TGKSRGFGFVSYEKHEDANKAVEDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V + N R R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ V G+ +R+ +S S ++ +++ NL ++ + L
Sbjct: 71 TMNFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 68 VVED----EINGKDN-VGGNEVDDDSSVEEPR----------SRARPCELYVCNLPRSFD 112
VED E+NGK VG + ++ E R SR + LY+ NL + D
Sbjct: 247 AVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKNLDDTID 306
Query: 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172
+L + F PFG++ S +V E G S+G G++ S A A+ ++G VG + +
Sbjct: 307 DEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 364
Query: 173 VRFS 176
V +
Sbjct: 365 VALA 368
>gi|226532724|ref|NP_001151236.1| RNA binding protein [Zea mays]
gi|195645238|gb|ACG42087.1| RNA binding protein [Zea mays]
Length = 257
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ LP + +++ ++F+ +G + S+++SR P++G RG +L S A ++
Sbjct: 77 PGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIKSL 136
Query: 159 IALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG +G R MRV R + S + + PKK E YVGNLSW V
Sbjct: 137 -ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKK---SEGCLSAYVGNLSWNVDEN 192
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
DLR FG + S R D++ +R F + F D + A+++N
Sbjct: 193 DLRGFFGP-SKIASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMN 238
>gi|194697124|gb|ACF82646.1| unknown [Zea mays]
gi|414864467|tpg|DAA43024.1| TPA: RNA binding protein [Zea mays]
Length = 257
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ LP + +++ ++F+ +G + S+++SR P++G RG +L S A ++
Sbjct: 77 PGKVVASGLPYTTTEADIRKLFEFYGPIQSMQLSRFPDSGNFRGLAFLCFESEEDAIKSL 136
Query: 159 IALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
LDG +G R MRV R + S + + PKK E YVGNLSW V
Sbjct: 137 -ELDGFKIGSRYMRVERCRVTATSNKKRKAEFETDPKK---SEGCLSAYVGNLSWNVDEN 192
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
DLR FG + S R D++ +R F + F D + A+++N
Sbjct: 193 DLRGFFGP-SKIASVRFAVDKRTGGSRGFCHVEFQDDESLEKAIAMN 238
>gi|241947949|ref|XP_002416697.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
gi|223640035|emb|CAX44279.1| pre-rRNA processing and ribosome biogenesis, nuclear localization
sequence binding, nucleolar protein, putative [Candida
dubliniensis CD36]
Length = 423
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 6/170 (3%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D S L F+ G V+S V TG SRG GY+ + ++A+ A+
Sbjct: 195 PATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKSRGYGYVDFETKSAAEKAL 254
Query: 159 IALDGSDVGGREMRVRFSIDM--NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+ G ++ GR + + S SR+ N A + + ++ L+VGNLS+
Sbjct: 255 EEMQGKEIDGRPINLDMSTGKPHASRSTNDRAKQYGDSQSALSDT---LFVGNLSFNANR 311
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++L FG +G V+S RV Q + FG++ FSS E AAL +LNG
Sbjct: 312 DNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 361
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + + L +F +G V+S V +P+T +G GY+ S++ AK A+ AL
Sbjct: 300 LFVGNLSFNANRDNLFTVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 359
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 360 NGEYIEGRPCRLDFS 374
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 187 EALISPPKK---IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
E + +P KK V E P L+VG LSW + L+ F G V+SARV+ +R +
Sbjct: 177 EEVSTPVKKSKPAAVNEEPATLFVGRLSWNIDDSWLKREFEHIGGVISARVIMERATGKS 236
Query: 244 RVFGFISFSSDAERDAAL 261
R +G++ F + + + AL
Sbjct: 237 RGYGYVDFETKSAAEKAL 254
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 92/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L E+F FG LSV+V + E G SRG G++ A+ A+ +
Sbjct: 193 IYVKNFEGDMDDECLQELFSQFGKTLSVKVMVD-ENGQSRGFGFVNFEKHEEAQKAVSNM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G ++GGR + V + + R + K+ V Y+ + LYV NL + E L
Sbjct: 252 NGKELGGRVLYVGRAQKRSERQSELKRRFEQMKQERVNRYQGVN-LYVKNLDDIIDDEKL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL+
Sbjct: 311 RKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPLY 364
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG G++ + +A AI +
Sbjct: 101 IFIKNLDDSIDNKALYDTFSTFGNILSCKVVCD-ENG-SRGFGFVHFETHEAANQAINTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + F +YV N + E L+
Sbjct: 159 NGMLLNDRKV---FVGHFKSR-QEREAELGARALEFT-----NIYVKNFEGDMDDECLQE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +FG +S +V+ D GQ +R FGF++F E A+S +NG
Sbjct: 210 LFSQFGKTLSVKVMVDENGQ-SRGFGFVNFEKHEEAQKAVSNMNG 253
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D +L + F P+G + S +V E G S+G G++ S
Sbjct: 285 QERVNRYQGVNLYVKNLDDIIDDEKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|448520030|ref|XP_003868205.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis Co 90-125]
gi|380352544|emb|CCG22770.1| hypothetical protein CORT_0B10690 [Candida orthopsilosis]
Length = 498
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ L + D L F+ V+S V TG SRG GY+ S ++A+NAI
Sbjct: 254 PATIFAGRLSWNIDDDWLKREFEHLEGVISARVIMERATGKSRGYGYVDFSSKSAAENAI 313
Query: 159 IALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ G ++ GR + + S N R R SPP L++GNLS
Sbjct: 314 AEMQGKEIDGRPINLDLSTGKPHATKSNNDRARQFGDQQSPPSDT--------LFIGNLS 365
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ + L FG +G V+S R+ Q + FG++ FSS E AAL +LNG
Sbjct: 366 FNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 420
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + +L E+F +G V+S + +P+T +G GY+ S++ AK A+ AL
Sbjct: 359 LFIGNLSFNANRDKLFEVFGEYGNVISCRLPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 418
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 419 NGEYLEGRPCRLDFS 433
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 182 RTRNAEALISPPKKIFVYES------PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
+ AE++ +P K ES P ++ G LSW + + L+ F V+SARV+
Sbjct: 228 KIEEAESINTPENKKAKSESFTTDEEPATIFAGRLSWNIDDDWLKREFEHLEGVISARVI 287
Query: 236 HDRKGQTTRVFGFISFSSDAERDAALS 262
+R +R +G++ FSS + + A++
Sbjct: 288 MERATGKSRGYGYVDFSSKSAAENAIA 314
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E ++F P+G + S+ + ++ + G S+G G
Sbjct: 229 DRESKFEE--MKANYTNIYVKNIDLEFSEKEFEDLFAPYGKITSIYLEKD-QDGKSKGFG 285
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ SA A+ AL+ ++ G+++ V + RT + + K+ Y+
Sbjct: 286 FVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGV 345
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ SA+V+ D G+ +R FGF+ FS+ E A++
Sbjct: 346 N-LFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGK-SRGFGFVCFSTPEEATKAIT 403
Query: 263 LNGTVESHTVAFQPLF 278
+ V +PL+
Sbjct: 404 ---EMNQRMVNGKPLY 416
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + AI L
Sbjct: 63 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIDEL 122
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 123 NYSLIENRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 167
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 168 TFSAFGRILSCKVATDDLGQ-SKCFGFVHY 196
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G SRG G++ +
Sbjct: 337 EKLSKYQGVNLFVKNLDDQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSRGFGFVCFSTP 395
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 396 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 435
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 122 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 180
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 181 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 237
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 238 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 291
Query: 277 LF 278
+
Sbjct: 292 FY 293
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 30 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGARAKEFT-----NVYIKNFGEDMDDERLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
+ FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 138 DLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 182
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 18/122 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 171 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 230
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 231 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 288
Query: 168 GR 169
+
Sbjct: 289 TK 290
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFEKHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRRSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQHDPSLRKSGVGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L +F FG LSV V + E G SRG G++ + A+ A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ + I ++I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ-ERIQRYQGVN-LYVKNLDDSIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D G +R FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYEVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGML 162
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D +L + F P+GT+ S +V + G SRG G++ S
Sbjct: 285 QERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 96/187 (51%), Gaps = 17/187 (9%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
Y+ N+P +D + L + F FG VLS VSR +T + G G++ SA A+ AL+
Sbjct: 219 YIKNVPYEWDDARLNQEFAQFGEVLSATVSRE-DTNQTLGFGFINFAEHESAVAAVEALN 277
Query: 163 GSD----VGGREMRVRFSI----DMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSW 212
G + + G E+ + + + R R A K +I ++ + LYV NL
Sbjct: 278 GKEYTTTLDGEEITQQIYVGRAQKKSERERELRAKFEAEKMDRISKFQGVN-LYVKNLDD 336
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHT 271
+V + LR+ F GT+ SARV+ D K +R FGF+ +S+ E A++ +NG +
Sbjct: 337 SVTDDMLRDEFAVMGTITSARVMKDAKDGRSRGFGFVCYSTPEESTRAVNEMNGKL---- 392
Query: 272 VAFQPLF 278
+A +P+F
Sbjct: 393 IANKPIF 399
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + D +L + F FG +LS +V + E G+S G GY+ + +A AI L
Sbjct: 129 IFVKNLNEAIDNKQLYDTFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + G+E++V + N R +S Y+ N+ + L
Sbjct: 189 DGMLIDGQEVQVGHFMRRNDRPD--------------IDSWTNCYIKNVPYEWDDARLNQ 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F +FG V+SA V + QT FGFI+F+ AA+ +LNG
Sbjct: 235 EFAQFGEVLSATVSREDTNQTLG-FGFINFAEHESAVAAVEALNG 278
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S L E+F G V S+ V R+ T S G Y+ + A+ A+ +
Sbjct: 41 LYVGDLAPDVNESLLFEIFSAVGPVASIRVCRDAVTRRSLGYSYVNFHQMADAERAMDTM 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S S R+ ++V NL+ A+ + L +
Sbjct: 101 NFSMIKGKPCRIMWSQRDPSLRRSGVG---------------NIFVKNLNEAIDNKQLYD 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ DR+G + +G++ + + +AA+ L+G +
Sbjct: 146 TFSLFGNILSCKVVTDREGGVSMGYGYVHYETAEAANAAIEKLDGML 192
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 82/154 (53%), Gaps = 13/154 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ +P +G S+G G++ + SA+NAI
Sbjct: 106 ANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDP-SGQSKGYGFVQFDNEESAQNAID 164
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E + K F + +YV NLS + EDL
Sbjct: 165 KLNGMLINDKQVYV------GQFLRKQERETALNKTKF-----NNVYVKNLSESTTEEDL 213
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+N FG FG + S V+ D G+ ++ FGF++F +
Sbjct: 214 KNIFGEFGIITSVVVMRDGDGK-SKCFGFVNFEN 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++V P A LYV +L + S+L ++F G VLSV V R+ T S G GY+
Sbjct: 6 AAVAGPNGVANTASLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVN 65
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ A A+ L+ + + G+ +R+ +S S ++ A +++
Sbjct: 66 YSNPQDAARALDLLNFTPLNGKPIRIMYSHRDPSIRKSGTA---------------NIFI 110
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL ++ + L + F FG ++S ++ D GQ ++ +GF+ F + ++ ++A LNG
Sbjct: 111 KNLDKSIDNKALHDTFSAFGNILSCKIATDPSGQ-SKGYGFVQFDNEESAQNAIDKLNGM 169
Query: 267 V 267
+
Sbjct: 170 L 170
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + SV V R+ + G S+ G++ + + A A+ AL
Sbjct: 199 VYVKNLSESTTEEDLKNIFGEFGIITSVVVMRDGD-GKSKCFGFVNFENADDAAEAVEAL 257
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V ++ ++ + R +++ K++ LY+ NL ++
Sbjct: 258 NGKKFDEKEWYVGKAQKKYERELELKGRFEQSM----KEVVDKFQGVNLYIKNLDDSIGD 313
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ L+ F FGT+ S +V+ D G +R GF++FS+ E AL+ +NG + V +
Sbjct: 314 DKLKELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRALTEMNGKM----VVSK 368
Query: 276 PLF 278
PL+
Sbjct: 369 PLY 371
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 287 EQSMKEVVDKFQGVNLYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 345
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 346 AFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 390
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L +F FG LSV V + E G SRG G++ + A+ A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ + I ++I Y+ + LYV NL ++ E
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ-ERIQRYQGVN-LYVKNLDDSIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ D G +R FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFAPYGTITSAKVMTD--GGHSRGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYEVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNMDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIETMNGML 162
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R + LYV NL S D +L + F P+GT+ S +V + G SRG G++ S
Sbjct: 285 QERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVM--TDGGHSRGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 13/213 (6%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSR-----ARPCELYVCNLPRSFDISELLEMFKPFGTVL 127
+N K G+ + +S E +S+ A+ +YV NL + +++F+ FG V
Sbjct: 197 LNDKKVYVGHHISRKASSRERQSKLEEMKAQFTNIYVKNLDPEVTQDDFVKLFEQFGNVT 256
Query: 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
S V + E G SRG G++ + A+ A+ L S+ GR++ V + R
Sbjct: 257 SA-VIQTDEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELR 315
Query: 188 ALISPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
K K+ Y+ + LY+ NL + E LR F FG++ SA+V+ D KG T++
Sbjct: 316 KSYEQAKVEKMSKYQGVN-LYIKNLEDDIDDERLRQEFEPFGSITSAKVMRDEKG-TSKG 373
Query: 246 FGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
FGF+ FSS E A++ + + + +PL+
Sbjct: 374 FGFVCFSSPDEATKAVA---EMNNKMIGSKPLY 403
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL + + L +
Sbjct: 106 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG V+S +V D G+ ++ +GF+ + +++A A ++NG +
Sbjct: 151 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAAETAIKAVNGML 196
>gi|242076980|ref|XP_002448426.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
gi|241939609|gb|EES12754.1| hypothetical protein SORBIDRAFT_06g026990 [Sorghum bicolor]
Length = 278
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF E+ ++F GTV VEV + + G +RG ++TM + A A
Sbjct: 76 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKG-KDGRNRGFAFVTMSTTEEAAAAAEK 134
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR ++V F SR+ A + P + E HKLYV NL W + +++
Sbjct: 135 LNSHDVMGRTIKVEF-----SRSFRKPAPLPP-----IIER-HKLYVSNLPWKARAPNVK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F +F +SA V+ D + F+SF + E +AAL+ L+G
Sbjct: 184 EFFAKFNP-LSANVIFDNGKAAG--YCFVSFGTKEEAEAALTELDG 226
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NGT+
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTL 162
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEDR 374
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NGT+
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTL 162
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ +YV NL E+F FG + S +S++ E G SRG G++ S A
Sbjct: 224 KAQYTNIYVKNLDPELGQEGFEELFGKFGNITSAALSKD-EEGKSRGFGFVNFESHEQAA 282
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L +++ GR++ V + + R K K+ Y+ + LY+ NL
Sbjct: 283 AAVETLHDTEINGRKLYVARAQKKSEREDELRKSYENAKQEKLSKYQGVN-LYIKNLEDD 341
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273
+ E LR F FGT+ S +V+ D K T++ FGF+ FSS E A+S + + +
Sbjct: 342 IDDEKLRAEFEPFGTITSCKVMRDEKN-TSKGFGFVCFSSPDEATKAVS---EMNNKMIG 397
Query: 274 FQPLF 278
+PL+
Sbjct: 398 SKPLY 402
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI ++
Sbjct: 137 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKSV 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I K + +YV NL + E
Sbjct: 196 NGMLLNDKKVFVGHHIPRKER----QSKIDEMKAQYT-----NIYVKNLDPELGQEGFEE 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
FG+FG + SA + D +G+ +R FGF++F S + AA+
Sbjct: 247 LFGKFGNITSAALSKDEEGK-SRGFGFVNFESHEQAAAAV 285
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 49 LYVGELDPSVTEAMLFEVFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALDQL 108
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 109 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 153
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG V+S +V D G ++ +GF+ + +++A +A S+NG +
Sbjct: 154 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKSVNGML 199
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+++ +E S+ + LY+ NL D +L F+PFGT+ S +V R+ E S+G G++
Sbjct: 318 ENAKQEKLSKYQGVNLYIKNLEDDIDDEKLRAEFEPFGTITSCKVMRD-EKNTSKGFGFV 376
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E I+ +I + ++
Sbjct: 377 CFSSPDEATKAVSEMNNKMIGSKPLYVSLAQRREVRRQQLETQIAQRNQIRMQQA 431
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E E+F P+G + S+ + ++ + G S+G G
Sbjct: 231 DRESKFEE--MKANYTNIYVKNIDLGFTEKEFEELFAPYGKITSIYLEKD-QDGKSKGFG 287
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ SA +A+ AL+ ++ G+++ V + RT + + K+ Y+
Sbjct: 288 FVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGV 347
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FGT+ SA+V+ D G+ ++ FGF+ FS+ E A++
Sbjct: 348 N-LFIKNLDDQIDSEKLEEEFKPFGTITSAKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 405
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 406 ---EMNQRMINGKPLY 418
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + AI L
Sbjct: 65 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNYHKFEDGEKAIDEL 124
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 125 NYSLVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 169
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D GQ ++ FGF+ + + +AA+ ++NG +
Sbjct: 170 TFSAFGRILSCKVATDDMGQ-SKCFGFVHYETGEAAEAAIENVNGML 215
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 12/143 (8%)
Query: 60 AVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLP 108
+ VD + + EING+ G EE + S+ + L++ NL
Sbjct: 296 SAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIRLEKLSKYQGVNLFIKNLD 355
Query: 109 RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
D +L E FKPFGT+ S +V + + G S+G G++ + A AI ++ + G
Sbjct: 356 DQIDSEKLEEEFKPFGTITSAKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMING 414
Query: 169 REMRVRFSIDMNSRTRNAEALIS 191
+ + V + + R E I
Sbjct: 415 KPLYVALAQRKDVRRSQLEQQIQ 437
>gi|340383337|ref|XP_003390174.1| PREDICTED: ELAV-like protein 3-like [Amphimedon queenslandica]
Length = 392
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 19/182 (10%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D++ + P ++A+ L V LP++ L ++F FG VLS ++ ++ +GIS G G
Sbjct: 10 DENPGPQNPETKAK-TNLIVNYLPQTLTEEGLKQLFSQFGVVLSCKLIKDKSSGISLGYG 68
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ GS A++AI ++G+ + + ++V ++ + +NA
Sbjct: 69 FVNYGSAEEAEHAIQKMNGTTLESKTLKVSYARPSSVAIKNAN----------------- 111
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
+YV NL + +L F +GT+++++VL D R GF+ F + + A+ +L
Sbjct: 112 VYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVRFDKYTQAEVAIAAL 171
Query: 264 NG 265
NG
Sbjct: 172 NG 173
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 9/91 (9%)
Query: 95 SRARP-------CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S ARP +YV NLP ++EL +F+P+GT+++ +V + +TG RG G++
Sbjct: 98 SYARPSSVAIKNANVYVANLPPQLSLTELDALFQPYGTIITSKVLTDEDTGAGRGVGFVR 157
Query: 148 MGSINSAKNAIIALDGSD-VGGRE-MRVRFS 176
A+ AI AL+G VGG + + V+F+
Sbjct: 158 FDKYTQAEVAIAALNGKQLVGGTQPLLVKFA 188
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 32 LPTLINFQYPKLSSCWSRSHP--AGF--RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDD 87
+PT+ N +Y +SS + P AG + +A + V + N GGN
Sbjct: 246 IPTVSNMRYNPVSSLPTAGLPTAAGMVNPAAMAALTGMTTGVPNLANLAPVAGGN----G 301
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S++ P + C ++V NLP + L ++F PFG + SV V R+ ++G+ + G++
Sbjct: 302 STMTSPGDPSY-C-VFVYNLPETCQDFLLYQLFSPFGAITSVNVIRDLKSGLCKRYGFVN 359
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRF 175
M S A +AI+ L+G G+ ++V F
Sbjct: 360 MKSYEDACSAIMTLNGYVHDGKTLQVSF 387
>gi|115470657|ref|NP_001058927.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|34394882|dbj|BAC84331.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113610463|dbj|BAF20841.1| Os07g0158300 [Oryza sativa Japonica Group]
gi|125557292|gb|EAZ02828.1| hypothetical protein OsI_24955 [Oryza sativa Indica Group]
gi|215695203|dbj|BAG90394.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740788|dbj|BAG96944.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 348
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 88/180 (48%), Gaps = 5/180 (2%)
Query: 93 PRSR----ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
PRSR P L+V NLP + E+ + F G V +V++ + T SRG ++TM
Sbjct: 107 PRSRPALGQEPGRLFVGNLPYTMTSGEISQTFSEAGRVDNVQIIYDKVTDRSRGFAFVTM 166
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ A AI +G+ +GGR RV + ++ A + ++ + K+Y G
Sbjct: 167 ATAEEAATAIQMFNGALLGGRTARVNYP-EVPRGGERAVGSAAATRENRRDDGTFKIYAG 225
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
NL W V+ + LR F ++ ARV+ +R +R FGF+SF + + AAL VE
Sbjct: 226 NLGWGVRADALRAAFEGQPGLLDARVIFERDSGRSRGFGFVSFRTAEDAQAALEALDGVE 285
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRYSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TASAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E R++A +Y+ N D +L E+F +G LSV+V + +G S+G G+++ +
Sbjct: 152 ELRNKAGEFTNVYIKNFGEDMDDEKLKEVFSKYGRTLSVKVMTDS-SGKSKGFGFVSFDN 210
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + KK ++ KLY+ N
Sbjct: 211 HEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQLKKERIHGCQGVKLYIKN 270
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
L + E LR F FG++ +V+ + G ++ FG I FSS E A++ +NG
Sbjct: 271 LDDTIDDEKLRKEFSSFGSISRVKVMQE--GGQSKGFGLICFSSLEEATKAMTEMNG--- 325
Query: 269 SHTVAFQPL 277
H + +PL
Sbjct: 326 -HILGSKPL 333
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F +G LS+ V + + G S+G G+++
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKELFSKYGPALSIRVMTD-DGGKSKGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR++ V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG +
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI--- 357
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 358 -VATKPLY 364
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPLRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDDIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L E+F FG LSV+V + E G SRG G++ A+ A+ ++
Sbjct: 178 IYVKNFEEDVDDQCLEELFSEFGKTLSVKVMVD-ENGHSRGFGFVNFEKHEEAQKAVNSM 236
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +GGR + V + R R E + +++ Y+ + LYV NL + E
Sbjct: 237 NGKALGGRVLYVGRAQKRTERQGELKRRFEQMKQ--ERVNRYQGVN-LYVKNLDDVIDDE 293
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +P
Sbjct: 294 KLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKP 347
Query: 277 LF 278
L+
Sbjct: 348 LY 349
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D +L + F P+G + S +V E G S+G G++ S
Sbjct: 270 QERVNRYQGVNLYVKNLDDVIDDEKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSS 327
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 328 PEEATKAVTEMNGRIVSTKPLYVALAQRKEER 359
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 10/189 (5%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LY+ NL + L E F FG ++S+ +S++ + G+S+G ++ + +
Sbjct: 184 PGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKD-DNGLSKGFAFVNYENPD 242
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNL 210
AK A+ A++G G + + V + R + +K I Y++ + LYV N+
Sbjct: 243 DAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKNI 301
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTVES 269
V ++LR+ F GT+ S +V+ D KG ++ FGF+ FS+ E + A +S NG
Sbjct: 302 DDDVTDKELRDLFSSCGTITSVKVMRDDKG-ISKGFGFVCFSNPEEANKAVMSFNGC--- 357
Query: 270 HTVAFQPLF 278
T +PL+
Sbjct: 358 -TFHRKPLY 365
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L ++FK +G +LS +V + E G S+G G++ SA NAI L
Sbjct: 102 VFVKNLAGSIDNAGLHDLFKKYGNILSSKVVMS-EDGKSKGYGFVQFEWEESANNAIEKL 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+GS VG +++ V + R I P Y++ + LY+ NL + L+
Sbjct: 161 NGSTVGNKQIYVGKFVRKGDR-------ILPG-----YDAKYTNLYIKNLDSDITEALLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG ++S + D G ++ F F+++ + D + A ++NG
Sbjct: 209 EKFSSFGKIISLAISKDDNG-LSKGFAFVNYENPDDAKKAMEAMNG 253
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A P +YV +L L F FG++ SV V R+ T S GY+ S A
Sbjct: 9 AVPASIYVGDLHPDVQEHHLFAAFVEFGSIASVRVCRDRVTMNSLCYGYVNFRSQQDAIR 68
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
AI + S + G+ +RV + R+ A S +F V NL+ ++
Sbjct: 69 AIKLRNNSYLNGKVIRVMW------LHRDPNARKSGRGNVF---------VKNLAGSIDN 113
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGT 266
L + F ++G ++S++V+ G+ ++ +GF+ F ++ +A LNG+
Sbjct: 114 AGLHDLFKKYGNILSSKVVMSEDGK-SKGYGFVQFEWEESANNAIEKLNGS 163
>gi|168229272|ref|NP_001094949.1| poly(A) binding protein, cytoplasmic 4-like [Mus musculus]
gi|148703238|gb|EDL35185.1| mCG12357 [Mus musculus]
Length = 370
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R +P E +Y+ N D +L E+F +G LSV+V ++ TG S+G G+++
Sbjct: 179 EAELRDKPTEFTNVYIKNFGDDVDDEKLREVFSKYGQTLSVKVMKDA-TGKSKGFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYV 207
S +AKNA+ ++G D+ G+ + V + R + + KK + KLY+
Sbjct: 238 DSHEAAKNAVEDMNGQDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G Y+ +N A
Sbjct: 5 AKYRAASLYVGDLHEDVTEDMLFRKFSTVGPVLSIRICRDLISQRSLGYAYVNFLQVNDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A++ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALVTMNFDVIKGKSIRLMWS------QRDACLRRSGVGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273
+ L HF FGT++S++V+ D G+ ++ +GF+ + D A+ +NG + +
Sbjct: 110 DNKTLYEHFSPFGTIMSSKVMTD--GEGSKGYGFVHYQDRRAADRAIEEMNGKLLRESTL 167
Query: 274 FQPLFP 279
F F
Sbjct: 168 FVARFK 173
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 102/180 (56%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR + +++ NL ++ D L + F FG ++S +++ + +G S+G G++
Sbjct: 108 SHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQ 166
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +SA+NAI L+G + +++ V + R ++ + ++S K + +YV
Sbjct: 167 FEAEDSAQNAIDKLNGMLINDKQVFVGHFL----RKQDRDNVLSKTKF-------NNVYV 215
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
NLS + +DL+N FG +GT+ SA ++ D G+ ++ FGF++F + DA + A +LNG
Sbjct: 216 KNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR-SKCFGFVNFENAEDAAK-AVEALNG 273
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 7/186 (3%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + +YV NL SF +L F +GT+ S + R+ + G S+ G++ + A
Sbjct: 206 SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDAD-GRSKCFGFVNFENAEDA 264
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSW 212
A+ AL+G V +E V + + R + + K V + LY+ NL
Sbjct: 265 AKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDD 324
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTV 272
++ E L+ F FGT+ S +++ D G +R GF++FS+ E AL G + +
Sbjct: 325 SITDEKLKEMFSEFGTITSYKIMRDPNG-VSRGSGFVAFSTPEEASRAL---GEMNGKMI 380
Query: 273 AFQPLF 278
+PL+
Sbjct: 381 VSKPLY 386
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S +L EMF FGT+ S ++ R+P G+SRG G++ + A A+ +
Sbjct: 317 LYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDP-NGVSRGSGFVAFSTPEEASRALGEM 375
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G + + + V + R +A S
Sbjct: 376 NGKMIVSKPLYVAVAQRKEDRRARLQAQFS 405
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++F++ +DAA +L+
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTN--PQDAARALD 91
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFG 299
+ F P+ N + V +++ PS R G
Sbjct: 92 ------VLNFTPM--NNKSIRVMYSHRDPSSRKSG 118
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D + L E+F FG LSV+V + E G S+G G+++ +
Sbjct: 176 ARAREFTNVYIKNFGEDMDNARLGEIFGRFGRALSVKVMTD-ERGRSKGFGFVSYATHED 234
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ GR + V + R + K ++ Y+ + LYV NL
Sbjct: 235 AQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQDRVTRYQGVN-LYVKNLD 293
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESH 270
+ E LR F FGT+ SA+V+ + G +R FGF+ FS+ D A +NG +
Sbjct: 294 DTIDDERLRTEFSPFGTITSAKVMME--GGHSRGFGFVCFSAPDEAAKAVTEMNGKL--- 348
Query: 271 TVAFQPLF 278
V +PL+
Sbjct: 349 -VTSKPLY 355
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ +
Sbjct: 2 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMITRSSLGYAYVNFQQSSDAQRVLE 61
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ ++V NL ++ L
Sbjct: 62 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG---------------NIFVKNLEKSIDNRAL 106
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V+ D G ++ +GF+ F + + A+ +NG V
Sbjct: 107 FDAFSGFGNILSCKVVSDENG--SKGYGFVHFETQESAEKAIEKMNGIV 153
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR-------- 94
R GF V E+A DE+NGK+ VG + + E R
Sbjct: 218 RGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQIKQD 277
Query: 95 --SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
+R + LYV NL + D L F PFGT+ S +V E G SRG G++ + +
Sbjct: 278 RVTRYQGVNLYVKNLDDTIDDERLRTEFSPFGTITSAKVMM--EGGHSRGFGFVCFSAPD 335
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 336 EAAKAVTEMNGKLVTSKPLYVALAQRKEER 365
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|343475725|emb|CCD12959.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 369
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL D S L +F +G ++S V RN TG S G ++ + A+ A+ AL
Sbjct: 26 LFICNLSPGVDESALKRIFSAYGEIVSAAVMRNIHTGESLGTAFVRFATTEQAQRAMEAL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS GR M V+++ + T EA KKI KL+V N+ V E++R
Sbjct: 86 TGSMQEGRAMIVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVGAEEVRR 135
Query: 222 HFGRFGTVVS-------ARVLHDRKGQTTRVFGFISFSSDAERDAA 260
F RFG V S A H GQ R F++F ++ D A
Sbjct: 136 LFERFGAVESVTLHKDTAAASHADVGQPLRRIAFVTFVAEGVADRA 181
>gi|388504962|gb|AFK40547.1| unknown [Lotus japonicus]
Length = 285
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 9/167 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV LP S +++ ++F GTV VE+ R + G +G ++TM S A+ A+
Sbjct: 87 KLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + R + P E+ H +Y NL+W V+ LR
Sbjct: 146 FDTLELSGRILRVELA------KRFKKPSPPGPPSPPPSEARHVIYASNLAWKVRSTHLR 199
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F F +SAR++ D +GFIS+ + E +AA+S L+G
Sbjct: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDG 246
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KLYV L W++ D+++ FG+ GTV ++ + G+ + + F++ +S E AA+
Sbjct: 87 KLYVFTLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAVDK 145
Query: 264 NGTVE 268
T+E
Sbjct: 146 FDTLE 150
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|449540824|gb|EMD31812.1| hypothetical protein CERSUDRAFT_88684 [Ceriporiopsis subvermispora
B]
Length = 292
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L + F G V+S V + TG SRG GY+T ++ A +A IA
Sbjct: 46 IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATV-EAVDAAIAQ 104
Query: 162 DGSDVGGREMRVRFSIDMNS---RTRNAEAL---ISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR + + SI+ + R + AEA S P + L+VGNLSW
Sbjct: 105 NGKEIDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSV--------LFVGNLSWDAT 156
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
+ L F +G + S RV DR+ + F ++ FS
Sbjct: 157 EDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFS 193
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRS--RARPCE------------LYVCNLPRS 110
EAV NGK+ + G V+ D S+E+ + R + E L+V NL S
Sbjct: 96 EAVDAAIAQNGKE-IDGRAVNIDKSIEKDKGAVRQKRAEAYGDKASEPSSVLFVGNL--S 152
Query: 111 FDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
+D +E L E F +G + SV V + ETG +G Y+ I ++K A G++V G
Sbjct: 153 WDATEDTLWETFNEYGDIKSVRVPTDRETGKPKGFAYVEFSDIEASKKAFEGAAGAEVAG 212
Query: 169 REMRVRFS 176
R +RV FS
Sbjct: 213 RNIRVDFS 220
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
++VG LSW V + L F G VVSARV DR +R FG+++F++ DAA++ N
Sbjct: 46 IFVGKLSWNVDNDWLAQEFAECGEVVSARVQMDRNTGKSRGFGYVTFATVEAVDAAIAQN 105
Query: 265 G 265
G
Sbjct: 106 G 106
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 215 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 273
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 274 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 330
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 331 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 383
Query: 276 PLF 278
PL+
Sbjct: 384 PLY 386
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 35 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 94
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 95 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 139
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 140 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 184
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 254 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 313
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 314 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 371
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 372 VTEMNGRIVGSKPLYVALAQRKEER 396
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|342180347|emb|CCC89824.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 534
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 17/193 (8%)
Query: 79 VGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
G D + V + R+ R L+V N+PR+ S L +F+P+G ++S V RN T
Sbjct: 89 AGAGRGDVSAPVADSRAETRSRTNLFVSNIPRTMGKSGLTTLFEPYGEIVSAAVMRNIHT 148
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G S G ++ + A+ A+ AL GS GR M V+++ + T EA +KI
Sbjct: 149 GESLGTAFVRFATTEQAQRAMEALTGSMQEGRAMIVQWAKRQHDDTPVGEAR----RKIV 204
Query: 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD---RKGQTT-RVFGFISFSS 253
KL+V N+ V DL FGRFG V + D +G+ R FI+F +
Sbjct: 205 ------KLFVRNIPLDVSDGDLSELFGRFGAVKGVSIHKDTTPSEGRNAERRIAFITFQT 258
Query: 254 D--AERDAALSLN 264
+ AE+ A + N
Sbjct: 259 ESVAEKAAEVIHN 271
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S +EE +A +YV N+ ++ E E+F PFG + S+ + ++ E G S+G G
Sbjct: 235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + RT + + K+ Y+
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGV 351
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ S++V+ D G+ ++ FGF+ FS+ E A++
Sbjct: 352 N-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409
Query: 263 LNGTVESHTVAFQPLF 278
+ V +PL+
Sbjct: 410 ---EMNQRMVNGKPLY 422
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 173
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D GQ ++ FGF+ + ++ AA+ S+NG +
Sbjct: 174 TFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEEAAQAAIESVNGML 219
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LSV+V+ + + G S+ G++ + +A+ AI ++
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + + + +YV N+ A ++
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKA---------NYTNIYVKNIDLAYTEKEFEE 266
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F FG + S + D +G+ ++ FGF++F +A A LN
Sbjct: 267 LFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHEAAAKAVEELN 309
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G S+G G++ +
Sbjct: 343 EKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTP 401
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 402 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 441
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEMDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|414883566|tpg|DAA59580.1| TPA: hypothetical protein ZEAMMB73_267259 [Zea mays]
Length = 277
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 27/141 (19%)
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV----------RFSIDMNSRTRNA 186
T SRG ++TM + A AI DG+ +GGR RV R ++ M+ R R+
Sbjct: 85 TNRSRGFAFVTMATAEEAAKAIQMFDGALLGGRTARVNYPEVPRGGERRTVTMSGRRRD- 143
Query: 187 EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF-GRFGTVVSARVLHDRKGQTTRV 245
+ +K+Y GNL W V+ + LRN F GR G ++ ARV+ +R+ +R
Sbjct: 144 -------------DGTYKIYAGNLGWGVRADTLRNVFEGRAG-LLDARVIFERETGRSRG 189
Query: 246 FGFISFSSDAERDAAL-SLNG 265
FGF+SFS+ + AAL SL+G
Sbjct: 190 FGFVSFSTAEDAQAALESLDG 210
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++Y NL L +F+ +L V ETG SRG G+++ + A+ A+ +
Sbjct: 148 KIYAGNLGWGVRADTLRNVFEGRAGLLDARVIFERETGRSRGFGFVSFSTAEDAQAALES 207
Query: 161 LDGSDVGGREMRVRFS 176
LDG ++ GR +R+ +
Sbjct: 208 LDGVELEGRSLRLSLA 223
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 6/184 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL D E ++F+P+GT+ S ++ + + G S+G G++ + A+
Sbjct: 290 RAQFTNIYVKNLDTEIDEDEFRKLFEPYGTITSAVLNLDAD-GKSKGFGFVNYETHEMAQ 348
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAV 214
A+ AL+ D+ G+++ V + N R K + LY+ N+ +
Sbjct: 349 KAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDM 408
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAF 274
E LR F +GT+ S++++ D KG ++ FGF+ FS+ E A++ + + +
Sbjct: 409 DDEKLRAEFEPYGTITSSKIMRDDKG-VSKGFGFVCFSTPDEATRAIA---EMNNKMIGS 464
Query: 275 QPLF 278
+PL+
Sbjct: 465 KPLY 468
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 72/143 (50%), Gaps = 12/143 (8%)
Query: 70 EDEINGKDNVGG-----NEVDD------DSSVEEPRSRARPCELYVCNLPRSFDISELLE 118
E +INGK G NE D+ D++ E ++ + LY+ N+ D +L
Sbjct: 356 EKDINGKKLFVGRAQKRNERDEELRRTFDAAKMERLAKLQGVNLYIKNIDDDMDDEKLRA 415
Query: 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
F+P+GT+ S ++ R+ + G+S+G G++ + + A AI ++ +G + + V +
Sbjct: 416 EFEPYGTITSSKIMRD-DKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQR 474
Query: 179 MNSRTRNAEALISPPKKIFVYES 201
+ R + E+ IS +I + ++
Sbjct: 475 RDVRRQQLESQISQRNQIRMQQA 497
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A AI A+
Sbjct: 203 IFIKNLDEGIDNKALHDTFVAFGNVLSCKVAVD-EQGNSKGYGFVHYETAEAADAAIKAV 261
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V I R + + + F +YV NL + ++ R
Sbjct: 262 DGMLLNDKKVYVGRHIPRKERQSKLDEI----RAQFT-----NIYVKNLDTEIDEDEFRK 312
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +GT+ SA + D G+ ++ FGF+++ +
Sbjct: 313 LFEPYGTITSAVLNLDADGK-SKGFGFVNYET 343
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + + A+ L
Sbjct: 112 LYVGELDPSVTEAILFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNSSDGERALEQL 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ V + + S +++ NL + + L +
Sbjct: 172 NYSLIKGKPWHV------------SRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHD 219
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F FG V+S +V D +G ++ +GF+ + +
Sbjct: 220 TFVAFGNVLSCKVAVDEQG-NSKGYGFVHYET 250
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 206 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 264
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 265 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 321
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 322 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 374
Query: 276 PLF 278
PL+
Sbjct: 375 PLY 377
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 298 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 355
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 356 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 387
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 31/180 (17%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS----------- 150
LYV +L + L E F P G VLS+ V R+ T S G Y+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADVMPTSTSS 72
Query: 151 --INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ ++ + G+ +R+ +S S ++ +++
Sbjct: 73 SPLTVTERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIK 117
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
NL ++ + L + F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 NLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 175
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L ++F +G +S+ V + E G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G ++ G+ + V R + +T + LYV NL + E LR
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLR 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ SA+V+ D G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 312 KEFSPFGTITSAKVMMD--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V + G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--DGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|356531425|ref|XP_003534278.1| PREDICTED: 29 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 282
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 10/178 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +++ ++F GTV VE+ ++ + G S+G ++TM S A+ A+
Sbjct: 74 KLYVVNLSWSLTAADITDLFAQCGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 132
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + + P E+ H +Y NL+W + LR
Sbjct: 133 FDSYELSGRIIRVELAKRLKKPPSLPPPPGPRPG-----ETRHVIYASNLAWKARSTHLR 187
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
F F T SARV+ D + +GF+SF + + +AA+S TV+ + +PL
Sbjct: 188 QVFTENFKTPSSARVVFDSPSGRSAGYGFVSFLTREDAEAAIS---TVDGKELMGRPL 242
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 168 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 226
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 227 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 283
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 284 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 336
Query: 276 PLF 278
PL+
Sbjct: 337 PLY 339
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 76 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 133
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 134 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F +FG +S +V+ D G+ ++ FGF+S+ + + A+ +NG S + F
Sbjct: 184 ELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 237
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E F P G VLS+ V R+ T S G Y+ A+ A+ ++ + G+ +R+ +
Sbjct: 2 LYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMW 61
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S S ++ +++ NL ++ + L + F FG ++S +V+
Sbjct: 62 SQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 106
Query: 236 HDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
D G ++ + F+ F + D A+ +NG +
Sbjct: 107 CDENG--SKGYAFVHFETQEAADKAIEKMNGML 137
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 260 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 317
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 318 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 349
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L E F GT++S +V+ + G SRG G++ + +SAKNAI L
Sbjct: 131 LFVKNLDKSVDNKTLHETFSGCGTIVSCKVAAD-HMGQSRGYGFVQFDTEDSAKNAIEKL 189
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F +YV NLS ++L+
Sbjct: 190 NGKVLNDKQIFVGPFLRKEERESAAD------KMKFT-----NVYVKNLSEVTTDDELKT 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG++G++ SA V+ D G+ +R FGF++F + DA R A +LNG
Sbjct: 239 TFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAAR-AVEALNG 282
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C LYV +L + S+L + F V+SV V R+ T S G GY+ + A+ A+
Sbjct: 41 CSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQ 100
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ S + G+ +R+ +S +S R+ L+V NL +V + L
Sbjct: 101 KLNYSTLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTL 145
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F GT+VS +V D GQ +R +GF+ F + D+ ++A LNG V
Sbjct: 146 HETFSGCGTIVSCKVAADHMGQ-SRGYGFVQFDTEDSAKNAIEKLNGKV 193
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL F +G++ S V R+ + G SR G++ + A A+ AL
Sbjct: 222 VYVKNLSEVTTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 280
Query: 162 DGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +E V + + R +R E S F LYV NL V E
Sbjct: 281 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDAGNKF---DGLNLYVKNLDDTVTDE 337
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ S +V+ D G T++ GF++FS+ +E L+ +NG + V +P
Sbjct: 338 KLRELFAEFGTITSCKVMRDPSG-TSKGSGFVAFSAASEASRVLNEMNGKM----VGGKP 392
Query: 277 LF 278
L+
Sbjct: 393 LY 394
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L E+F FGT+ S +V R+P +G S+G G++ + + A + +
Sbjct: 325 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 383
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+G VGG+ + V + R +A S + F+
Sbjct: 384 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI 420
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ NL S E EMF+ +G V S V + E G S+G G++ A+
Sbjct: 221 KAQFTNLYIKNLDTSVTQDEFEEMFQKYGNVTSAIVQVD-EEGNSKGFGFVNYEHHEEAQ 279
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
+A+ AL +D+ G+++ V + R K K+ Y+ + LY+ NL
Sbjct: 280 SAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQAKMEKLSKYQGVN-LYIKNLEDD 338
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273
V E LR F FGT+ S +V+ D K T++ FGF+ FSS E A++ + + +
Sbjct: 339 VDDEKLRAEFEPFGTITSCKVMRDDK-STSKGFGFVCFSSPDEATKAVA---EMNNKMIG 394
Query: 274 FQPLF 278
+PL+
Sbjct: 395 SKPLY 399
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTSDGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 106 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG V+S +V D G+ ++ +GF+ + + +A A ++NG +
Sbjct: 151 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETGEAAETAIKAVNGML 196
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L F+PFGT+ S +V R+ + S+G G++ S
Sbjct: 320 EKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKSTSKGFGFVCFSSP 378
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 379 DEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 428
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 184 VYIKNFGEEVDDDNLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 242
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 243 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 299
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 300 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 352
Query: 276 PLF 278
PL+
Sbjct: 353 PLY 355
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F+ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWS------QRDPSLRKSGVGNVFIK---------NLDKSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 109 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 153
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 223 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 282
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 283 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 340
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 341 VTEMNGRIVGSKPLYVALAQRKEER 365
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L ++F FG LSV+V + E G S+G G+++ A+ A+ L
Sbjct: 161 VYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMTD-ERGKSKGFGFVSFERGEDAQKAVDEL 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + KI Y+ + LYV L + E
Sbjct: 220 NGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQ--DKITRYQGLN-LYVKYLDDYIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGKI----VATKP 330
Query: 277 LF 278
L+
Sbjct: 331 LY 332
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 49/211 (23%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMFTRRSSGYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFS------------IDMNS---------RTRNA--------EALISP 192
+ + G+ +R+ +S D N T+ A ++
Sbjct: 73 NFDVINGKSVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 132
Query: 193 PKKIFV--YESPHK--------------LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
+K+FV ++S + +YV N + E L++ FG+FG +S +V+
Sbjct: 133 DQKVFVGRFKSRKEREAELGARAKEFTNVYVKNFGEDMDDEHLKDLFGKFGPTLSVKVMT 192
Query: 237 DRKGQTTRVFGFISFS--SDAERDAALSLNG 265
D +G+ ++ FGF+SF DA++ A LNG
Sbjct: 193 DERGK-SKGFGFVSFERGEDAQK-AVDELNG 221
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV L
Sbjct: 210 EDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQMKQDKITRYQGLNLYVKYL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDYIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVA 327
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 328 TKPLYVALAQRKEER 342
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|449443534|ref|XP_004139532.1| PREDICTED: uncharacterized protein LOC101217028 [Cucumis sativus]
gi|449505564|ref|XP_004162509.1| PREDICTED: uncharacterized LOC101217028 [Cucumis sativus]
Length = 477
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +L++ + D L E F+ FG V+ V + R+ TG +RG G++ +A A
Sbjct: 3 PGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRATGRARGFGFVVFADPVAA--AR 60
Query: 159 IALDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ L+ + GR + + ++ D N +RN ++ P K++VG L+ V
Sbjct: 61 VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPT----RTKKIFVGGLASTVT 116
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
D + +F +FGT+V V++D Q R FGFI++ S+ + L
Sbjct: 117 ESDFKKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVL 162
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G VG + + V
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYV 365
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 277 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 330
Query: 277 LF 278
L+
Sbjct: 331 LY 332
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 210 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 269
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 270 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 328 TKPLYVALAQRKEER 342
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 97/181 (53%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D L EMF+ +G ++S +V ++ +G ++G G++ A+NA L
Sbjct: 193 VFVKNFGDELDDEGLREMFERYGKIVSHKVMQDDHSGRNKGFGFVCFEDPIDAENACDDL 252
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+ D+ GR + R + I+ + RN L+ ++ Y+ + LYV NL ++ E
Sbjct: 253 NMKDINGRILYVGRAQKKIERQAELRNRFELMK-AERANRYQGVN-LYVKNLDDSLDDER 310
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 311 LRKEFMPFGTITSAKVMSE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 364
Query: 278 F 278
+
Sbjct: 365 Y 365
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ ++
Sbjct: 13 LYVGDLHNDVTEAMLFEKFSSAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDSM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + + +
Sbjct: 73 NFDVIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F+++ + ++ +NG +
Sbjct: 118 TFSAFGDILSCKVVCDENG--SKGYGFVHFATEEAANKSIEKVNGML 162
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +R + LYV NL S D L + F PFGT+ S +V E G S+G G++ S
Sbjct: 287 ERANRYQGVNLYVKNLDDSLDDERLRKEFMPFGTITSAKVMS--EGGRSKGFGFVCFSSP 344
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 345 EEATKAVTEMNGRIVSTKPLYVALA 369
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +++ + +G+S+G G++ + +A+NAI
Sbjct: 123 ANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATD-ASGLSKGYGFVQFDNEEAAQNAID 181
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R ++ E +S K F + +YV NLS + E+L
Sbjct: 182 KLNGMLINDKQVYVGHFL----RKQDRENALS--KTKF-----NNVYVKNLSESTTDEEL 230
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+FG +GT+ SA ++ D G+ +R FGF++F + D A LNG
Sbjct: 231 MINFGEYGTITSALIMRDADGK-SRCFGFVNFENPDDAAKAVEGLNG 276
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 6/189 (3%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E S+ + +YV NL S EL+ F +GT+ S + R+ + G SR G++ +
Sbjct: 205 ENALSKTKFNNVYVKNLSESTTDEELMINFGEYGTITSALIMRDAD-GKSRCFGFVNFEN 263
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+ A A+ L+G +E V + + R + + K + P LY+ N
Sbjct: 264 PDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSIKEAADKYPGLNLYLKN 323
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269
L + E L+ F +GT+ S +V+ D G +R GF++FS+ E AL G +
Sbjct: 324 LDDTISDEKLKEMFADYGTITSCKVMRDPTG-ISRGSGFVAFSTPEEATRAL---GEMNG 379
Query: 270 HTVAFQPLF 278
A +PL+
Sbjct: 380 KMFAGKPLY 388
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL + +L EMF +GT+ S +V R+P TGISRG G++
Sbjct: 304 EQSIKEAADKYPGLNLYLKNLDDTISDEKLKEMFADYGTITSCKVMRDP-TGISRGSGFV 362
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++G G+ + V + R +A S + + + S
Sbjct: 363 AFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQMRPVAITPS 417
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++FS+ +DAA +L+
Sbjct: 37 LYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSN--PQDAARALD 94
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFG 299
+ F PL N + + +++ PS R G
Sbjct: 95 ------VLNFTPL--NNRSIRIMYSHRDPSLRKSG 121
>gi|225459201|ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|302142004|emb|CBI19207.3| unnamed protein product [Vitis vinifera]
Length = 294
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 13/173 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE SR R L N+P + ++ +F+ +GTVL VE+S + +T +RG +++MGS
Sbjct: 83 EEEFSRTR---LIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTR-NRGLAFISMGS 138
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A A+ L+ ++ GR ++V ++ N + + + I K + +P+ L++ NL
Sbjct: 139 PEEALAALSNLESYELEGRAIKVNYA---NPQKKKPSSPIQH-KPV----TPYNLFIANL 190
Query: 211 SWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ + +DLR F VVSA V+ + + +GF+SF S E D ALS
Sbjct: 191 PYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALS 243
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE RA LYV NL + +E+F FG V S V + E G S+G G++
Sbjct: 224 QSKLEE--MRAHFTNLYVKNLDLEVTQDQFVELFSQFGAVTSA-VIQTDEEGKSKGFGFV 280
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ A A+ L +D G+++ V + R K K+ Y+ +
Sbjct: 281 NFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSYESAKMEKLSKYQGVN- 339
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LY+ NL V E LR F FGT+ S +V+ D KG T++ FGF+ FSS E A++
Sbjct: 340 LYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRDDKG-TSKGFGFVCFSSPDEATKAVA-- 396
Query: 265 GTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 397 -EMNNKMIGSKPLY 409
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L + F FG VLS +V+ + E G SRG GY+ + +A++AI A++G + +++ V +
Sbjct: 158 LHDTFAAFGNVLSCKVATD-EQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGY 216
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
I R E + + F LYV NL V + F +FG V SA +
Sbjct: 217 HISRKERQSKLEEM----RAHFT-----NLYVKNLDLEVTQDQFVELFSQFGAVTSAVIQ 267
Query: 236 HDRKGQTTRVFGFISFSSDAERDAAL 261
D +G+ ++ FGF++F + + A+
Sbjct: 268 TDEEGK-SKGFGFVNFENHEQAAKAV 292
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ ++ + A+ L
Sbjct: 46 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNVTDGERALEQL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK--PEDL 219
+ S + GR R+ +S R+ + IF+ ++ +L + A K P L
Sbjct: 106 NYSLIKGRACRIMWS------QRDPALRKTGQGNIFI-KNLDELIDNKVRTAQKTPPHAL 158
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ F FG V+S +V D +G+ +R +G++ + +++A A ++NG +
Sbjct: 159 HDTFAAFGNVLSCKVATDEQGR-SRGYGYVHYETAEAAESAIKAVNGML 206
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + LY+ NL D +L F+PFGT+ S +V R+ + G S+G G++
Sbjct: 325 ESAKMEKLSKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCKVMRD-DKGTSKGFGFV 383
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 384 CFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 438
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG LSV+V + E+G S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDLRLKRLFGKFGPSLSVKVMTD-ESGTSKGFGFVNFERHEDAQKAVEEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V + R R E L +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G + FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRNKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPEVSEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALETM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALFD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + DA A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SKGYGFVHFETRDAAERAIDKMNGML 162
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A +E+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G ++G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRNKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + + + R
Sbjct: 360 TKPLYIALAQRKEER 374
>gi|363814334|ref|NP_001242808.1| uncharacterized protein LOC100793319 [Glycine max]
gi|255639879|gb|ACU20232.1| unknown [Glycine max]
Length = 289
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 10/178 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +++ ++F GTV VE+ ++ + G S+G ++TM S A+ A+
Sbjct: 81 KLYVVNLSWSLTAADINDLFAQSGTVTDVEIIKSKD-GRSKGYAFVTMASGEEAQAAVDK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
D ++ GR +RV + E+ H +Y NL+W + LR
Sbjct: 140 FDSYELSGRIIRVELAKRFKKPPSPPPPPGPR-----PGETRHVIYASNLAWKARSTHLR 194
Query: 221 NHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
F F T SARV+ D + +GF+SF + + +AA+S TV+ + +PL
Sbjct: 195 QLFAENFKTPSSARVVFDSPSGRSAGYGFVSFLTKEDAEAAIS---TVDGKELMGRPL 249
>gi|147769276|emb|CAN61580.1| hypothetical protein VITISV_008033 [Vitis vinifera]
Length = 294
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 13/173 (7%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE SR R L N+P + ++ +F+ +GTVL VE+S + +T +RG +++MGS
Sbjct: 83 EEEFSRTR---LIAQNIPWTCTAQDIRSLFEKYGTVLDVELSMHNKTR-NRGLAFISMGS 138
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A A+ L+ ++ GR ++V ++ + SP + V +P+ L++ NL
Sbjct: 139 PEEALAALSNLESYELEGRAIKVNYANPQKKKPS------SPIQHKPV--TPYNLFIANL 190
Query: 211 SWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ + +DLR F VVSA V+ + + +GF+SF S E D ALS
Sbjct: 191 PYQARAKDLREFFSSGNCNVVSAEVIFHENPRRSSGYGFVSFGSKEEADTALS 243
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|429242947|ref|NP_594207.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe 972h-]
gi|391358175|sp|Q9P3U1.3|YKX5_SCHPO RecName: Full=Uncharacterized RNA-binding protein C328.05
gi|347834162|emb|CAB96000.3| RNA-binding protein involved in export of mRNAs (predicted)
[Schizosaccharomyces pombe]
Length = 464
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 36/197 (18%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + +L ++F+ G+V+ ++ N E G SRG G + M S+ A +AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM 238
Query: 161 LDGSDVGGREMRVR-----------FSIDMNSRTRNAEALISPP-------------KKI 196
L +D GR + VR +S N T AE ++ + +
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 197 FVYESPHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+ PH +YVGNL WA +L + F G+V+ AR+ ++ G+ ++ FG + F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGR-SKGFGVVQF 357
Query: 252 SSDAERDAALS---LNG 265
+ E DAA S LNG
Sbjct: 358 EN--ENDAASSIEKLNG 372
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL E G VL+ E+ P G+S+GC + + A+ AI L
Sbjct: 79 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GR + +R + N+R ++ S E +L+VGNL + V+ +DL++
Sbjct: 138 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKD 197
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
F + G+V+ A + +++G+ +R G + SS E A+ +
Sbjct: 198 LFRQAGSVIRADIQMNQEGR-SRGIGIVVMSSMKEAMHAIQM 238
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 99 PCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
PC +YV NLP + LL++F G+V+ ++ P TG S+G G + + N A +
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAAS 365
Query: 157 AIIALDGSDVGGREMRVRFS 176
+I L+G GGR +++ ++
Sbjct: 366 SIEKLNGYRYGGRPLQLSYA 385
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 93/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E R++A +Y+ N D L E+F +G LSV+V +P +G S+G G+++ +
Sbjct: 181 ELRNKASEFTNVYIKNFGDDMDDERLREVFSKYGKTLSVKVMTDP-SGKSKGFGFVSFDN 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+A+ A+ ++G D+ G+ + V + R + + K+ + + KLY+ N
Sbjct: 240 HEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQQKRERIRKCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LR F FG++ +V+ + +GQ ++ FG I FSS E A++ +NG +
Sbjct: 300 LDDTIDDEKLRKEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEEATKAMTEMNGQI 356
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 88/177 (49%), Gaps = 24/177 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L S D++E L +FK F TV LS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDL--SADVTEDL-LFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDMIKGKSIRLMWS------QRDACLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
++ + L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 107 RSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 38/201 (18%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L E+F FG SV V + E+G RG G+++ +
Sbjct: 185 ARAREFTNVYIKNFGEDMDDEKLKEIFSKFGNATSVRVMTD-ESGGGRGFGFVSFENHED 243
Query: 154 AKNAIIALDGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFV 198
A+ A+ ++G ++ GR E++ RF RT + +
Sbjct: 244 AQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGV--------- 294
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
LYV NL + E LR F FG++ SA+V+ + G ++ FGF+ FSS E
Sbjct: 295 -----NLYVKNLDDGIDDERLRKEFSPFGSITSAKVMME--GGRSKGFGFVCFSSPEEAT 347
Query: 259 AALS-LNGTVESHTVAFQPLF 278
A++ +NG + VA +PL+
Sbjct: 348 KAVTEMNGRI----VATKPLY 364
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAIVSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF+ NL ++ + L +
Sbjct: 73 NFDVIKGQPVRIMWS------QRDPSLRKSGVGNIFIK---------NLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + DA A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SRGYGFVHFETHDAAERAIEKMNGML 162
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + +E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQMKQDRTTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFG++ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 93/179 (51%), Gaps = 11/179 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G LS+ V + E+G S+G G+++ A+ A+ +
Sbjct: 120 VYIKNFGEDMDDEKLKEIFSKYGPALSIRVMTD-ESGKSKGFGFVSFERHEDAQRAVDEM 178
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K ++ Y+ + LYV NL + E L
Sbjct: 179 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVN-LYVKNLDDGLDDERL 237
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL
Sbjct: 238 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPL 290
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 28 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 85
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF + + R AE + K F +Y+ N + E L+
Sbjct: 86 NGMLLNDRKVFVGRFK---SRKERGAE--MGARAKEFT-----NVYIKNFGEDMDDEKLK 135
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
F ++G +S RV+ D G+ ++ FGF+SF DA+R A +NG
Sbjct: 136 EIFSKYGPALSIRVMTDESGK-SKGFGFVSFERHEDAQR-AVDEMNG 180
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 169 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 228
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G
Sbjct: 229 DDGLDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMNG 282
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 16/190 (8%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D L E+F FG LSV+V + E+G S+G G+++
Sbjct: 490 ARAREFTNVYIKNFGEDMDNDRLTEVFGKFGHALSVKVMTD-ESGKSKGFGFVSYEKHED 548
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGN 209
A+ A+ ++G + G+ + V + R R+ E + ++ Y+ + LYV N
Sbjct: 549 AQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQ--ERSSRYQGVN-LYVKN 605
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
L ++ E LR F FGT+ SA+V+ + G +R FGF+ FS+ E A+S +NG +
Sbjct: 606 LDDSIDDERLRKAFSPFGTITSAKVMME--GGHSRGFGFVCFSAPEEAAKAVSEMNGKL- 662
Query: 269 SHTVAFQPLF 278
VA +PL+
Sbjct: 663 ---VATKPLY 669
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ T S G Y+ + A+ +
Sbjct: 316 ASLYVGDLHHDVTEAMLYEKFSPAGPILSIRVCRDMLTRRSLGYAYVNFQQLADAERVLE 375
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ +++ NL ++ + L
Sbjct: 376 TMNLDVIKGKPVRIMWSQRDPSLRKSGVG---------------NIFIKNLEKSIDNKAL 420
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V+ D G ++ +GF+ F + D A+ +NG
Sbjct: 421 YKTFSAFGNILSCKVISDENG--SKGYGFVHFENQQAADKAIEKMNG 465
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRA 97
GF V E+A DE+NGK+ VG + + E R SR
Sbjct: 537 GFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQVKQERSSRY 596
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL S D L + F PFGT+ S +V E G SRG G++ + A A
Sbjct: 597 QGVNLYVKNLDDSIDDERLRKAFSPFGTITSAKVMM--EGGHSRGFGFVCFSAPEEAAKA 654
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 655 VSEMNGKLVATKPLYVALA 673
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQVVN-LYVKNLDDDIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSRAGPILSIRVCRDVITRRSSSYAYVNFQHPKDAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVGNI---------------FVKNLDKSINNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S +V+ D G ++ +GF+ F + +A A +NGT+
Sbjct: 118 TVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGTL 162
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLSVDMDEQGLQDLFFAFGNMLSVKVMRD-NSGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 162 DGSDVGGREMRV----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G +V G+++ V + + N R E L + + LYV NL ++ E
Sbjct: 252 NGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQTRY---RGVNLYVKNLDDSISDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRTVFSPYGVITSAKVMTE--GDHSKGFGFVCFSSPEEATKAVTEMNGCI----VGTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETNEAAQQAIGTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F S+ R EA + F +YV NLS + + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSQ-REREAELGAQALEFT-----NIYVKNLSVDMDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F FG ++S +V+ D G +R FGF++F E A+ +NG
Sbjct: 210 LFFAFGNMLSVKVMRDNSGH-SRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F+ NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVFIK---------NLEDSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F +++A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAIGTMNGML 162
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------------NEVDD--DSSVEEPR 94
H GF V EEA D +NGK+ G NE+ + ++ +
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQLKQDRQ 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R R LYV NL S +L +F P+G + S +V E S+G G++ S A
Sbjct: 289 TRYRGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVMT--EGDHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGCIVGTKPLYVALAQRKEER 374
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 180 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 238
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 239 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 295
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 296 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 349
Query: 277 LF 278
L+
Sbjct: 350 LY 351
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 88 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 145
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 146 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 195
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FG++G +S +V+ D G+ ++ FGF+SF E + A+ +NG
Sbjct: 196 ELFGKYGKTLSVKVMTDPTGK-SKGFGFVSFEKHEEANKAVEEMNG 240
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 229 EEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 288
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 289 DDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 346
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 347 SKPLYVALAQRKEER 361
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQXXXXXM 219
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 276
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 277 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 330
Query: 277 LF 278
L+
Sbjct: 331 LY 332
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL D L + F PFGT+ S +V E G S+G G++ S A
Sbjct: 257 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEA 314
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G V + + V + R
Sbjct: 315 TKAVTEMNGRIVATKPLYVALAQRKEER 342
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKVLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 199 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 257
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 258 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 314
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 315 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 367
Query: 276 PLF 278
PL+
Sbjct: 368 PLY 370
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + ++A AI +
Sbjct: 107 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQDAADRAIEKM 164
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N + E L+
Sbjct: 165 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGDDMDDERLK 214
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F ++G +S +V+ D G+ ++ FGF+SF + + A+ +NG
Sbjct: 215 ELFSKYGKTLSVKVMTDPTGK-SKGFGFVSFEKHEDANKAVEEMNG 259
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 248 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 307
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 308 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 365
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 366 SKPLYVALAQRKEER 380
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D + L E+F FG LSV+V + TG S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQ--ERVSRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +P
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ + S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S R+ S +F + NL ++ + L
Sbjct: 71 TMNFEVIKGRPVRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ F FG ++S +V+ D G +R GF+ F + +A A ++NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTMNGML 162
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL R+ D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 121 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + ++V NLS + ++L+N
Sbjct: 180 NGMLLNDKQVYVGPFLRKQERESAAD------KAKF-----NNVFVKNLSESTTDDELKN 228
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FGT+ SA V+ D G+ ++ FGF++F + DA R A +LNG
Sbjct: 229 TFGEFGTITSAVVMRDGDGK-SKCFGFVNFENADDAAR-AVEALNG 272
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E +A+ ++V NL S EL F FGT+ S V R+ + G S+ G++ +
Sbjct: 201 ESAADKAKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGD-GKSKCFGFVNFEN 259
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVG 208
+ A A+ AL+G + +E V + + R + K Y+ + LYV
Sbjct: 260 ADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-LYVK 318
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTV 267
NL ++ E L+ F FGT+ S +V+ D G +R GF++FS+ E A L +NG +
Sbjct: 319 NLDDSIGDEKLKELFSPFGTITSCKVMRDPNG-LSRGSGFVAFSTPEEASRALLEMNGKM 377
Query: 268 ESHTVAFQPLF 278
V +PL+
Sbjct: 378 ----VVSKPLY 384
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F PFGT+ S +V R+P G+SRG G++
Sbjct: 300 EQSMKEAADKYQGANLYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDP-NGLSRGSGFV 358
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A++ ++G V + + V + R +A
Sbjct: 359 AFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQA 400
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++FS+ +DAA +L+
Sbjct: 33 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSN--PQDAARALD 90
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL N + + +++ PS R G G
Sbjct: 91 ------VLNFTPL--NNRPIRIMYSHRDPSIRKSGQG 119
>gi|342180349|emb|CCC89826.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 292
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++CNL D S L +F +G ++S V RN TG S G ++ + A+ A+ AL
Sbjct: 26 LFICNLSPGVDESALKRIFSAYGEIVSAAVMRNIHTGGSLGTAFVRFAATEQAQRAMEAL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GS GR M V+++ + T EA KKI KL+V N+ V E++R
Sbjct: 86 TGSMQEGRAMIVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVGAEEVRR 135
Query: 222 HFGRFGTVVS-------ARVLHDRKGQTTRVFGFISFSSDAERDAA 260
F RFG V S A H GQ R F++F ++ D A
Sbjct: 136 LFERFGAVESVTLHKDTAAASHADVGQPLRRIAFVTFVAEGVADRA 181
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL R+ D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 118 IFIKNLDRAIDHKALHDTFSTFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + ++V NLS + ++L+N
Sbjct: 177 NGMLLNDKQVYVGPFLRKQERESTAD------KAKF-----NNVFVKNLSESTTDDELKN 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FGT+ SA V+ D G+ ++ FGF++F + DA R A +LNG
Sbjct: 226 VFGEFGTITSAVVMRDGDGK-SKCFGFVNFENADDAAR-AVEALNG 269
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 10/191 (5%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E +A+ ++V NL S EL +F FGT+ S V R+ + G S+ G++ +
Sbjct: 198 ESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMRDGD-GKSKCFGFVNFEN 256
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVG 208
+ A A+ AL+G +E V + + R + K Y+ + LYV
Sbjct: 257 ADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGAN-LYVK 315
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
NL ++ + L+ F FGT+ S +V+ D G +R GF++FS+ D A L +NG +
Sbjct: 316 NLDDSLGDDKLKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPDEASRALLEMNGKM 374
Query: 268 ESHTVAFQPLF 278
V +PL+
Sbjct: 375 ----VVSKPLY 381
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F PFGT+ S +V R+P GISRG G++
Sbjct: 297 EQSMKEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDP-NGISRGSGFV 355
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ + A A++ ++G V + + V + R +A
Sbjct: 356 AFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQA 397
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++FS+ +DAA +L+
Sbjct: 30 LYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSN--PQDAARALD 87
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL N + + +++ PS R G G
Sbjct: 88 ------VLNFTPL--NNRPIRIMYSHRDPSIRKSGQG 116
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL E +MF FG V S V ++ E G S+G G++ SA+ A+ AL
Sbjct: 239 LYVKNLDTEVTDDEFNDMFAKFGEVTSAVVQKD-EEGKSKGFGFVNFKDHESAQAAVDAL 297
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+++ G+++ V + R K K+ Y+ + LY+ NL + + L
Sbjct: 298 HDTELNGKKLFVTRAQKKAEREEELRKSYEQAKMEKLSKYQGAN-LYIKNLEDDMDDDKL 356
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F FGT+ S +++ D KG T++ FGF+ +SS E A++ + + + +PL+
Sbjct: 357 RAEFEPFGTITSCKIMRDEKG-TSKGFGFVCYSSPEEATKAVA---EMNNKMLGSKPLY 411
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G SRG G++ + +A AI A+
Sbjct: 146 IFIKNLDEQIDHKALHDTFAAFGNVLSCKVATD-ENGRSRGFGFVHYDTAEAADTAIKAV 204
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R +A I K F LYV NL V ++ +
Sbjct: 205 NGMLLNDKKVFVGHYISKKER----QAHIDEQKSQFT-----NLYVKNLDTEVTDDEFND 255
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG V SA V D +G+ ++ FGF++F AA+
Sbjct: 256 MFAKFGEVTSAVVQKDEEGK-SKGFGFVNFKDHESAQAAV 294
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 58 LYVGELDSTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 117
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 118 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDHKALHD 162
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG V+S +V D G+ +R FGF+ + + D A+ ++NG +
Sbjct: 163 TFAAFGNVLSCKVATDENGR-SRGFGFVHYDTAEAADTAIKAVNGML 208
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LY+ NL D +L F+PFGT+ S ++ R+ E G S+G G++ S
Sbjct: 332 EKLSKYQGANLYIKNLEDDMDDDKLRAEFEPFGTITSCKIMRD-EKGTSKGFGFVCYSSP 390
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A A+ ++ +G + + V + R + E+ I+
Sbjct: 391 EEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIA 430
>gi|4678944|emb|CAB41335.1| putative protein [Arabidopsis thaliana]
Length = 546
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 13/193 (6%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
E ++ + +P S A +Y+ N+PR+ +L ++ + G V +V + +G SR
Sbjct: 60 ETEEKPAALDPSSEA-ARRVYIGNIPRTVTNEQLTKLVEEHGAV--EKVMYDKYSGRSRR 116
Query: 143 CGYLTMGSINSAKNAIIALDGSD-------VGGREMRVRFSIDMNSRTRNAEALISPPKK 195
G+ TM S+ A + L+G+ V GRE++V + + + + L S
Sbjct: 117 FGFATMKSVEDANAVVEKLNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVLQSE-DS 175
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
FV +SP+K+YVGNL+ V E L N F G VVSA+V + FGF++FSS+
Sbjct: 176 AFV-DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEE 234
Query: 256 ERDAAL-SLNGTV 267
+ +AA+ +LN ++
Sbjct: 235 DVEAAIVALNNSL 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 22/144 (15%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGK------DNVGGNEVD-----------DDSSVE 91
RS GF ++ +V D AVV +++NG V G E+ D SV
Sbjct: 113 RSRRFGFATMKSVEDANAVV--EKLNGNSLFLVSQTVEGREIKVNITEKPIASSPDLSVL 170
Query: 92 EPRSRA---RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ A P ++YV NL ++ L +F G V+S +VSR P T S G G++T
Sbjct: 171 QSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTF 230
Query: 149 GSINSAKNAIIALDGSDVGGREMR 172
S + AI+AL+ S + G+++R
Sbjct: 231 SSEEDVEAAIVALNNSLLEGQKIR 254
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 96/183 (52%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEINGKVIFVGRAQKKVERQAELKRKFEQL--KQERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|326512286|dbj|BAJ96124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 236
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 27/212 (12%)
Query: 58 VLAVVDEEAV--VVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
+ A DE AV V E E + V EV + + E Y C E
Sbjct: 32 IAAAADERAVEQVQEQETPEEPAVAAAEVGEGA------------ESYECE-------EE 72
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-R 174
+ E+F FG + S+++SR P++G RG ++T S A + + LDG +G R MRV R
Sbjct: 73 IRELFDRFGPIRSLQLSRFPDSGNFRGLAFVTFESDEVALKS-LELDGYKIGNRFMRVER 131
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
I +S+ + S P+K + YVGNLSW + +DLR+ F + + S R
Sbjct: 132 CRITASSKRQKKTEFQSDPEKP---DGCLSAYVGNLSWNISEKDLRDFF-KSSRIASIRF 187
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
D++ +R F + F D + A+ +N +
Sbjct: 188 AIDKRTGDSRGFCHVDFEDDESLEKAVGMNQS 219
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + E G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +E+ V + R E + K F +YV N+ E+
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
FG++G + SA + D +G+ R FGF++F A
Sbjct: 238 LFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHA 270
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ + E E+F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ + G+++ V + R + + + K+ Y+
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L+ F FGT+ SA+V+ D G +R FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG-NSRGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 EKN---QQIVAGKPLY 393
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L + + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA +++G +
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDENG-VSRGFGFVHFENESDARDAIEAVDGML 190
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F PFGT+ S +V R+ ETG SRG G++ +
Sbjct: 314 EKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL E +F FG + S + ++ E G S+G G++ + A+ A+ L
Sbjct: 257 LYVKNLDTEVGEEEFEGLFSQFGPITSAVIQKD-EEGNSKGFGFVNFENHEDAQRAVEEL 315
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
D ++ G+ + V + + R K K Y+ + LY+ NL V E L
Sbjct: 316 DNKEIHGKPVFVGRAQKKSEREEELRKQYEQAKYEKAGKYQGSN-LYIKNLEDDVDDEKL 374
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F FGT+ S +V+ D KG T++ FGF+ FSS E A+S + + V +PL+
Sbjct: 375 RAEFEPFGTITSCKVMRDEKG-TSKGFGFVCFSSPDEATRAMS---EMNNKIVGTKPLY 429
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + L E+F G V SV V R+ T S G Y+ + N + A+ L
Sbjct: 76 LYVGELDPQVTEAMLFEIFNMIGPVASVRVCRDAVTRRSLGYAYVNYLNYNDGERALDQL 135
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + I ++ NL + + L +
Sbjct: 136 NYSQIRGKPCRIMWSQRDPGLRKTGQGNI---------------FIKNLDQGIDNKALHD 180
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FGTV+S +V D G ++ +GF+ + S+ +AA+ ++NG +
Sbjct: 181 TFAAFGTVLSCKVATDDSG-LSKGYGFVHYDSNEAAEAAIKAVNGML 226
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 199 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 257
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G DV G+ M R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 258 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 314
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 315 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 368
Query: 277 LF 278
L+
Sbjct: 369 LY 370
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A D++NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 248 EDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 307
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 308 DDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 365
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 366 SKPLYVALAQRKEER 380
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 22/172 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADGEYGNLLF 72
Query: 162 DGSDV-----GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
D DV GG+ + + + + R + +++ NL ++
Sbjct: 73 DRMDVCFHVAGGKAFTLLWFSERDPSLRKSGV--------------GNVFIKNLDKSIDN 118
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L + F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 119 KALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 168
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 6/169 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + E+ MF GTV S + R+ E G S+G G++ A +A+ AL
Sbjct: 221 VFVKNLDEAVSDDEVKAMFAEHGTVNSCIIMRDDE-GKSKGFGFINFEEPEQAASAVQAL 279
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISP--PKKIFVYESPHKLYVGNLSWAVKPEDL 219
+G DV +E+ V + R A ++I Y+ + LYV NL + E L
Sbjct: 280 NGKDVNCKELYVGRAQKKAEREAMLRAKFEELRSERIAKYQGMN-LYVKNLHDDIDDETL 338
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F +FGT+ SA+V+ D G+ +R FGF+ ++S E A++ +NG +
Sbjct: 339 RTEFSQFGTITSAKVMVDSAGK-SRGFGFVCYASPEEATRAVTEMNGRM 386
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 20/170 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI---NSAKNAI 158
LYV +L R ++L E+F G V S+ V R+ T S G Y+ S+ +A+ A+
Sbjct: 40 LYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERAL 99
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR MR+ +S R+ F +++ NL +V +
Sbjct: 100 DQLNYTPLVGRPMRIMWS------HRDP---------AFRKSGVGNIFIKNLDRSVDNKA 144
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
L + F FG ++S +V D KG+ ++ +GF+ F D + R A +NG +
Sbjct: 145 LHDTFSAFGNILSCKVAQDLKGE-SKGYGFVHFEKDESARLAIEKVNGML 193
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V R M + R E L ++I Y+ + LY+ NL + E
Sbjct: 253 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 309
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 310 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 363
Query: 277 LF 278
L+
Sbjct: 364 LY 365
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 74 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 118
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + DA A +NG +
Sbjct: 119 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 163
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 286 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 343
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 344 PEEATKAVTEMNGRIVGSKPLYVALA 369
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDP-SGKSKGFGFVSFERHEDANKAVDDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G DV G+ M R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + DA A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A D++NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 96/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D + L E+F FG LSV+V + TG S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-NTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQ--ERVSRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +P
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ V R+ + S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S R+ S +F + NL ++ + L
Sbjct: 71 TMNFEVIKGRPVRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ F FG ++S +V+ D G +R GF+ F + +A A ++NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIETMNGML 162
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V + + G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFG++ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|72387123|ref|XP_843986.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175980|gb|AAX70103.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800518|gb|AAZ10427.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 593
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+P +EL+++F P+G +LS V RN TG S G ++ + A+ A+ AL
Sbjct: 132 LFVSNIPHLLGKNELVDLFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQAQAAMEAL 191
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G + GR M V+++ + T EA KKI KL+V N+ V DL
Sbjct: 192 TGYVLEGRSMVVQWAKRQHDDTPVGEAR----KKIV------KLFVRNIPLDVSDADLTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVF----GFISFSSD--AERDAALSLNGTVESHTVAFQ 275
F FG V + D R FI+F +D AER AA +++ T H+
Sbjct: 242 VFSAFGPVKGVSIHKDTTPNAGRHLERRIAFITFHTDGVAER-AAEAIHNTRPFHSCGKI 300
Query: 276 PLF 278
PL
Sbjct: 301 PLM 303
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
S +EE +A+ +YV N+ E ++F+ FG V S + R+ E G S+G G++
Sbjct: 218 QSKIEE--MKAQFTNVYVKNIDAEVTDEEFRQLFEQFGNVTSAVIQRD-EEGRSKGFGFV 274
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
A+ + +L ++ G+++ V + R K K+ Y+ +
Sbjct: 275 NFEKHEEAQKGVESLHDFELNGKKLFVTRAQKKAEREEELRKSYEQAKNEKLSKYQGVN- 333
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LY+ NL V E LR F FGT+ SA+V+ D KG +++ FGF+ FSS E A++
Sbjct: 334 LYIKNLEDEVDDERLRQEFEPFGTITSAKVMRDEKG-SSKGFGFVCFSSPDEATKAVA-- 390
Query: 265 GTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 391 -EMNNKMIGTKPLY 403
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ + E S+ + LY+ NL D L + F+PFGT+ S +V R+ E G S+G G++
Sbjct: 319 EQAKNEKLSKYQGVNLYIKNLEDEVDDERLRQEFEPFGTITSAKVMRD-EKGSSKGFGFV 377
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
S + A A+ ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 378 CFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 432
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 50 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL + + L +
Sbjct: 110 NYSLIKGRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEGIDNKALHD 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG V+S +V D G+ ++ +GF+ + + D A+ ++NG +
Sbjct: 155 TFAAFGNVLSCKVATDEHGR-SKGYGFVHYETAEAADTAIKAVNGML 200
>gi|261327113|emb|CBH10089.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 601
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+P +EL+++F P+G +LS V RN TG S G ++ + A+ A+ AL
Sbjct: 132 LFVSNIPHLLGKNELVDLFSPYGEILSAAVMRNIHTGDSLGTAFVRFATTEQAQAAMEAL 191
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G + GR M V+++ + T EA KKI KL+V N+ V DL
Sbjct: 192 TGYVLEGRSMVVQWAKRQHDDTPVGEAR----KKIM------KLFVRNIPLDVSDADLTE 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVF----GFISFSSD--AERDAALSLNGTVESHTVAFQ 275
F FG V + D R FI+F +D AER AA +++ T H+
Sbjct: 242 VFSAFGPVKGVSIHKDTTPNAGRHLERRIAFITFHTDGVAER-AAEAIHNTRPFHSCGKI 300
Query: 276 PLF 278
PL
Sbjct: 301 PLM 303
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 13/152 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL R+ D L + F FG +LS +++ + +G+S+G G++ + SA++AI
Sbjct: 112 ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAID 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + + + V R ++ + +S K + +YV NLS +V +DL
Sbjct: 171 KLNGMLLNDKPVYVGHF----QRKQDRDNALSNAKF-------NNVYVKNLSESVTDDDL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+N FG +GT+ SA V+ D G+ ++ FGF++F
Sbjct: 220 KNTFGEYGTITSAVVMRDVDGK-SKCFGFVNF 250
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A+ +YV NL S +L F +GT+ S V R+ + G S+ G++ + ++A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAA 256
Query: 155 KNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
A+ AL+G +E V ++ ++ + R+ +++ K + LY+ N
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFY----GANLYLKN 312
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
L +V E L F FGTV S ++L D +G +R GF++FS+ E AL+ +NG +
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQG-ISRGSGFVAFSTPEEATRALAEMNGKM- 370
Query: 269 SHTVAFQPLF 278
VA +PL+
Sbjct: 371 ---VAGKPLY 377
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL S +L E+F FGTV S ++ R+P+ GISRG G++
Sbjct: 293 EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A A+ ++G V G+ + V
Sbjct: 352 AFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS R+ D Q + +G+++FS+ DAA +++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSN--PHDAAKAMD 83
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL N + + +++ PS R G
Sbjct: 84 ------VLNFTPL--NNKPIRIMYSHRDPSVRKSGAA 112
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D + ++ +P+G +LS V ++ E G SRG G++ + A A+ +L
Sbjct: 221 VFIKNLDVSVDDEKFKQILEPYGEILSAVVQKD-EQGNSRGFGFVNYKNHEEAAKAVESL 279
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +V G+++ + N R RN E + +K+ Y + LYV NL E
Sbjct: 280 NEVEVDGKKIFAARAQKKNEREEELRRNYEQ--AKLEKLAKYAGVN-LYVKNLDDDFDDE 336
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
L F FGT+ SA+++ D KG T++ FGF+ FSS E A+S + + +PL
Sbjct: 337 RLVGEFEPFGTITSAKIMRDEKG-TSKGFGFVCFSSPDEATKAVS---ELSGKMIGSKPL 392
Query: 278 F 278
+
Sbjct: 393 Y 393
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG VLS +V+ + E G SRG G++ + SA AI +
Sbjct: 128 IFIKNLDEAIDNKALHDTFAAFGNVLSCKVATD-ENGNSRGYGFVHYENGESASAAIQHV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +A I K F +++ NL +V E +
Sbjct: 187 NGMLLNDKKVYVGHHVSKKER----QAKIDEQKSQFT-----NVFIKNLDVSVDDEKFKQ 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264
+G ++SA V D +G +R FGF+++ + E A+ SLN
Sbjct: 238 ILEPYGEILSAVVQKDEQG-NSRGFGFVNYKNHEEAAKAVESLN 280
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL FD L+ F+PFGT+ S ++ R+ E G S+G G++ S + A A+ L
Sbjct: 324 LYVKNLDDDFDDERLVGEFEPFGTITSAKIMRD-EKGTSKGFGFVCFSSPDEATKAVSEL 382
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G +G + + V + + R + E+ I+
Sbjct: 383 SGKMIGSKPLYVSLAQRRDVRRQQLESQIA 412
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ ++ + A+ L
Sbjct: 40 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNLQDGERALEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL A+ + L +
Sbjct: 100 NYSLIKNRACRIMWSQRDPALRKTGQGNI---------------FIKNLDEAIDNKALHD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG V+S +V D G +R +GF+ + + AA+ +NG +
Sbjct: 145 TFAAFGNVLSCKVATDENG-NSRGYGFVHYENGESASAAIQHVNGML 190
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 96/197 (48%), Gaps = 28/197 (14%)
Query: 94 RSRARPCEL-----YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
+ R +P E+ + NL +L E+ P+GT+ +V + + +TG S+G +
Sbjct: 177 KERGQPTEIKFTNVFFKNLAEDVTSDQLKELLAPYGTITNVAIMLDEKTGKSKGFAFANF 236
Query: 149 GSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHK- 204
S ++AKN + +G G+ + R + I+ + ++ +E+ ++
Sbjct: 237 ESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKH------------TFETKYQG 284
Query: 205 --LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL 261
LY+ N+ ++ + LR F +FGT+ SA V+ D K T++ FGF+ ++S D A
Sbjct: 285 VNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEATRAVT 344
Query: 262 SLNGTVESHTVAFQPLF 278
+NG + + +PL+
Sbjct: 345 EMNGRM----IGTKPLY 357
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L E+F G V ++ V R+ T S Y+ + A+ A+ L
Sbjct: 12 LYVGDLLPEVSEQTLFEVFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNAADAERALDTL 71
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S ++ +++ NL + + L +
Sbjct: 72 NNTPIRGKPCRIMWSQRDPSLRKSGVG---------------NVFIKNLDKGIDHKALYD 116
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V+ D +++ FGF+ + S D A++ +NG +
Sbjct: 117 TFSAFGNILSCKVVTD-DNNSSKGFGFVHYESQDSADKAIAKVNGMM 162
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ + LY+ N+ S D +L E+F FGT+ S V ++ + S+G G++ S + A
Sbjct: 280 TKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAVVMKDDKATTSKGFGFVCYTSPDEA 339
Query: 155 KNAIIALDGSDVGGREMRVRFS 176
A+ ++G +G + + V +
Sbjct: 340 TRAVTEMNGRMIGTKPLYVALA 361
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + +G S+G G++ + SA+ AI L
Sbjct: 114 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKL 172
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + E+ I K F + +YV NLS EDL+
Sbjct: 173 NGMLLNDKQVYVGPFL----RKQERESAID--KTRF-----NNVYVKNLSETTTEEDLKK 221
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG +GT+ SA V+ D G+ T+ FGF++F ++D A +LNG
Sbjct: 222 AFGEYGTITSAVVMRDGDGK-TKCFGFVNFENADDAATAVEALNG 265
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R +YV NL + +L + F +GT+ S V R+ + G ++ G++ + + A
Sbjct: 199 KTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGD-GKTKCFGFVNFENADDAA 257
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNL 210
A+ AL+G +E V + N R + K E+ K LY+ NL
Sbjct: 258 TAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMK----EAADKFQGANLYIKNL 313
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269
++ + L+ F FGT+ S +V+ D G +R GF++FS+ E AL +NG +
Sbjct: 314 DDSIGDDRLKQLFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASKALMEMNGKM-- 370
Query: 270 HTVAFQPLF 278
V +PL+
Sbjct: 371 --VVSKPLY 377
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S L ++F PFGT+ S +V R+P GISRG G++
Sbjct: 293 EQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDP-NGISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A++ ++G V + + V + R +A S
Sbjct: 352 AFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFS 396
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++SS +DAA +L+
Sbjct: 26 LYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSS--PQDAARALD 83
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL + + +++ PS R G G
Sbjct: 84 ------MLNFTPL--NGSPIRIMYSHRDPSVRKSGSG 112
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDDIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 QKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLQKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
G D+ G+ M R + ++ + + ++ +I Y+ + LYV NL + E
Sbjct: 252 YGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQ-DRITRYQGVN-LYVKNLDDGIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL
Sbjct: 310 LRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+ GKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDDIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 QKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I +V NL ++ + L +
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKSGMGNI---------------FVKNLDKSINNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDDIDDERLQKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V R+ +G S+G G+++ S +AK A+ +
Sbjct: 192 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMRDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + K+ F KLY+ NL + E LR
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKRERFRRCQGVKLYIKNLDETIDDEKLR 310
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG++ +V+ + +G+ ++ FG I FSS E A++ +NG +
Sbjct: 311 REFSSFGSISRVKVMQE-EGR-SKGFGLICFSSPEEATKAMTEMNGRI 356
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L D++E L +FK F TV LS+ + R+ T S G Y+ +
Sbjct: 5 AKYRQASLYVGDLHA--DVTEDL-LFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDLIKGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
++ + L HF FG ++S++V+ D +G +R + F+ F + D A+ +NG +
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEMNGAL 161
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 93 PRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R R R C+ LY+ NL + D +L F FG++ V+V + E G S+G G +
Sbjct: 283 KRERFRRCQGVKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFS 340
Query: 150 SINSAKNAIIALDGSDVGGREMRV 173
S A A+ ++G +G + + +
Sbjct: 341 SPEEATKAMTEMNGRILGSKPLNI 364
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFIQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|320583460|gb|EFW97673.1| nuclear localization sequence binding protein [Ogataea
parapolymorpha DL-1]
Length = 500
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D LLE F+ VLS V ETG SRG GY+ S A+ A+
Sbjct: 262 LFVGRLAWAVDDQRLLEEFQSLDGVLSARVMTERETGRSRGYGYVDFESKEQAQKALEQF 321
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK----LYVGNLSWAVKPE 217
G ++ GR + + S + KK ++P + L+VGNLS+ +
Sbjct: 322 QGREIEGRPINLDMSTSKPQTPSQNQKFQDRAKKY--GDTPSQPSDTLFVGNLSFQADRD 379
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
L+ F + GTV+ R+ + + + FG++ F S E AAL +LNG
Sbjct: 380 TLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEALNG 428
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL D L E F+ GTVL + + +PE+ +G GY+ GS++ AK A+ AL
Sbjct: 367 LFVGNLSFQADRDTLKEFFEQHGTVLGIRIPTHPESEQPKGFGYVQFGSVDEAKAALEAL 426
Query: 162 DGSDVGGREMRVRFSI--DMNSRTRNA 186
+G + GR +R+ FS D N +RN
Sbjct: 427 NGEYIAGRPVRLDFSAPRDPNGGSRNG 453
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL ++ D L + F FG +LS +V+ + G S G G++ + SAKNAI L
Sbjct: 119 IYIKNLDKAIDNKALHDTFSAFGNILSCKVATD-SAGQSLGYGFVQFDNEESAKNAIDKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + K F + +YV NLS EDL+
Sbjct: 178 NGMLLNDKQVYVGPFLRRQERESGTD------KTKF-----NNVYVKNLSETTTEEDLKK 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG +G + SA V+ D G+ +R FGF++F + DA R +LNG
Sbjct: 227 IFGEYGAITSAVVMRDGDGK-SRCFGFVNFENPDDAARSVE-ALNG 270
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +G + S V R+ + G SR G++ + + A ++ AL
Sbjct: 210 VYVKNLSETTTEEDLKKIFGEYGAITSAVVMRDGD-GKSRCFGFVNFENPDDAARSVEAL 268
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R + K V + LYV NL ++ + L+
Sbjct: 269 NGKTFDEKEWYVGKAQKKSEREVELKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLK 328
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ S +V+ D G ++ GF+++S+ E AL+ +NG + + +PL+
Sbjct: 329 ELFSEFGTITSCKVMRDPNG-VSKGSGFVAYSTAEEASKALTEMNGKM----IVSKPLY 382
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + LYV NL S +L E+F FGT+ S +V R+P G+S+G G++
Sbjct: 298 EQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDP-NGVSKGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 357 AYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFS 401
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 11/179 (6%)
Query: 95 SRARPCELYVCNLPRSFDIS--ELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
SR + +YV N+P FD++ EL ++F +GT+ S ++R+ + G S+G G++
Sbjct: 204 SRVQFTNIYVKNIP--FDVTDEELSQLFGKYGTITSCVITRD-DDGTSKGFGFVNFEKHQ 260
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNL 210
A+NA+ L D G+++ V + N R K K+ Y+ + LYV NL
Sbjct: 261 DAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQYEEAKLEKMSKYQGVN-LYVKNL 319
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTV 267
+ + LR+ F +G + SA+++ D K +R FGF+ F+S DA R A +NG +
Sbjct: 320 DDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSPEDATR-AVTEMNGRI 377
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ + A+ A+ L
Sbjct: 30 LYVGELDPSVTEAMLFEMFNIIGPVSSIRVCRDAVTRRSLGYAYVNFHRMADAERALETL 89
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ S + GR R+ +S D + R N +++ NL ++ + L
Sbjct: 90 NYSMIKGRSCRIMWSQRDPSLRKGNN----------------GNIFIKNLDPSIDHKALH 133
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ F FG ++S ++ HD +G ++ +GF+ + + +A A S+NG +
Sbjct: 134 DTFSAFGNILSCKIAHDEQG-NSKGYGFVHYETLEAAESAIKSVNGML 180
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LYV NL D L + F +G + S ++ R+ +T ISRG G++ S
Sbjct: 304 EKMSKYQGVNLYVKNLDDDMDDDRLRDEFSVYGVITSAKIMRDEKTNISRGFGFVCFTSP 363
Query: 152 NSAKNAIIALDGSDVGGREM-----------RVRFSIDMNSRTRNAEALISP 192
A A+ ++G +G + + R + I M R + +A++ P
Sbjct: 364 EDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQRNQLKQAMMPP 415
>gi|242042437|ref|XP_002468613.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
gi|241922467|gb|EER95611.1| hypothetical protein SORBIDRAFT_01g048990 [Sorghum bicolor]
Length = 253
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 6/159 (3%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
+P + +++ ++F+ +G + SV++SR P++G RG ++ + A ++ LDG +
Sbjct: 81 MPYTTTEADIRKLFEFYGPLQSVQLSRFPDSGNFRGLAFICFETNEDAIKSL-ELDGFKI 139
Query: 167 GGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
G R MRV R + S + + PKK E YVGNLSW V +DLR+ F R
Sbjct: 140 GSRYMRVERCRVTATSNKKRKAEFQTDPKK---SEGCLSAYVGNLSWNVTEKDLRDFF-R 195
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
+ S R D++ +R F + F D + A+++N
Sbjct: 196 SSKIASVRFAIDKRTGGSRGFCHVDFQDDESLEKAVAMN 234
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 93/178 (52%), Gaps = 6/178 (3%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P A+ LY+ NL + L E F FG ++S+ +S++ + G+S+G ++ + +
Sbjct: 184 PGYDAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKD-DNGLSKGFAFVNYENPD 242
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNL 210
A+ A+ A++G G + + V + R + +K I Y++ + LYV N+
Sbjct: 243 DARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASN-LYVKNI 301
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
V ++LR+ F GT+ S +V+ D KG ++ FGF+ FS+ E + A+ S NG +
Sbjct: 302 DDDVTDKELRDLFSSCGTITSVKVMRDDKG-ISKGFGFVCFSNPEEANKAVRSFNGCM 358
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L ++F+ +G +LS +V + + G S+G G++ S SA NAI L
Sbjct: 102 VFVKNLAGSIDNAGLHDLFQKYGNILSSKVVMSGD-GKSKGYGFVQFESEESANNAIEKL 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPEDLR 220
+GS VG +++ V + R I P Y++ + LY+ NL + L+
Sbjct: 161 NGSTVGDKQIYVGKFVRKGDR-------ILPG-----YDAKYTNLYIKNLDSDITEALLQ 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F FG ++S + D G ++ F F+++ + D R A ++NG
Sbjct: 209 EKFSSFGKIISLVISKDDNG-LSKGFAFVNYENPDDARKAMEAMNG 253
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDA 259
P LYVG+L V L F F T+ S RV DR + +G+++F S DA R
Sbjct: 11 PASLYVGDLHSEVVDHHLFEAFAEFKTMDSVRVCRDRVTMKSLCYGYVNFKSQQDAIRAM 70
Query: 260 ALSLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
L N + V+ V +++ PS R G G
Sbjct: 71 KLKNNSYLNGK------------VIRVMWSHPDPSARKSGRG 100
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 13/152 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL R+ D L + F FG +LS +++ + +G+S+G G++ + SA++AI
Sbjct: 112 ANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAID 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + + + V R ++ + +S K + +YV NLS +V +DL
Sbjct: 171 KLNGMLLNDKPVYVGHF----QRKQDRDNALSNAKF-------NNVYVKNLSESVTDDDL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+N FG +GT+ SA V+ D G+ ++ FGF++F
Sbjct: 220 KNTFGEYGTITSAVVMRDVDGK-SKCFGFVNF 250
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A+ +YV NL S +L F +GT+ S V R+ + G S+ G++ + ++A
Sbjct: 198 SNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAA 256
Query: 155 KNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
A+ AL+G +E V ++ ++ + R+ +++ K + LY+ N
Sbjct: 257 AEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFY----GANLYLKN 312
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
L +V E L F FGTV S ++L D +G +R GF++FS+ E AL+ +NG +
Sbjct: 313 LDDSVTDEKLSELFSEFGTVTSCKILRDPQG-ISRGSGFVAFSTPEEATRALAEMNGKM- 370
Query: 269 SHTVAFQPLF 278
VA +PL+
Sbjct: 371 ---VAGKPLY 377
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LY+ NL S +L E+F FGTV S ++ R+P+ GISRG G++
Sbjct: 293 EQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQ-GISRGSGFV 351
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A A+ ++G V G+ + V
Sbjct: 352 AFSTPEEATRALAEMNGKMVAGKPLYV 378
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS R+ D Q + +G+++FS+ DAA +++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSN--PHDAAKAMD 83
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL N + + +++ PS R G
Sbjct: 84 ------VLNFTPL--NNKPIRIMYSHRDPSVRKSGAA 112
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E+ +F+P+G + S+ + ++ E G S+G G
Sbjct: 218 DRESKFEE--MKANFTNVYVKNIDLGFSEEEMRNLFEPYGKITSLHLEKDAE-GKSKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S +A A+ L+ D+ G+ + V + R + + K+ Y+
Sbjct: 275 FVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 335 N-LFVKNLDDSIDSVKLEEEFKPFGTITSARVMVDEHGK-SKGFGFVCFSSPEEATKAIT 392
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 81 GNEVDDDS-SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
GNE +D + S + P + A LYV L S + + L E+F P G V S+ V R+ T
Sbjct: 33 GNEGEDAADSTQLPDTSA---SLYVGELNPSVNEASLFEIFSPVGQVSSIRVCRDAVTKK 89
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
S G Y+ + + AI L+ S + GR R+ +S S RN E I
Sbjct: 90 SLGYAYVNFHKLEDGEKAIDDLNYSLIDGRPCRIMWSQRDPSLRRNGEGNI--------- 140
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERD 258
++ NL A+ + L + F FG ++S +V D +G ++ FGF+ + +++A R
Sbjct: 141 ------FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEQG-NSKCFGFVHYETAEAARA 193
Query: 259 AALSLNGTV 267
A ++NG +
Sbjct: 194 AIENVNGML 202
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+SL + K FGF +NF+ SH A ++V + D++
Sbjct: 258 TSLHLEKDAEGKSKGFGF------VNFE----------SHEAAVKAVEELNDKD------ 295
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
ING++ G +EE + S+ + L+V NL S D +L E F
Sbjct: 296 -INGQNLYVGRAQKKRERIEELKRQYETARLEKLSKYQGVNLFVKNLDDSIDSVKLEEEF 354
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S V + E G S+G G++ S A AI ++ G+ + V + +
Sbjct: 355 KPFGTITSARVMVD-EHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKD 413
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 414 VRRSQLEQQIQ 424
>gi|448123237|ref|XP_004204643.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|448125519|ref|XP_004205201.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358249834|emb|CCE72900.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
gi|358350182|emb|CCE73461.1| Piso0_000503 [Millerozyma farinosa CBS 7064]
Length = 505
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 88/171 (51%), Gaps = 8/171 (4%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L + D L F+P G V V +G SRG GY+ + + A++A+
Sbjct: 290 PATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQHAL 349
Query: 159 IALDGSDVGGREMRVRFSIDMN-SRTRNAEALISPPKKIF-VYESPHK-LYVGNLSWAVK 215
G ++ GR + ++DM+ S+ R + K+ V +P L++GNLS+ +
Sbjct: 350 KEYQGREIDGRPI----NLDMSESKPRPSNPRFDRAKQFGDVPSAPSSTLFIGNLSFNAQ 405
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++L + FG +G VVS R+ Q + FG+I FS+ E AAL +LNG
Sbjct: 406 RDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEALNG 456
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + L ++F +G V+S + +P+T +G GY+ +++ AK A+ AL
Sbjct: 395 LFIGNLSFNAQRDNLYDIFGEYGRVVSCRMPTHPDTQQPKGFGYIEFSTVDEAKAALEAL 454
Query: 162 DGSDVGGREMRVRFSIDMNSRTR 184
+G V GR R+ FS + R
Sbjct: 455 NGEYVEGRPCRLDFSTPRENSNR 477
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P L+VG LSW + E L+ F G V ARV++++ +R +G++ F + ++
Sbjct: 288 EEPATLFVGRLSWNIDDEWLQREFEPLGGVTGARVIYEKASGKSRGYGYVDFETKSQAQH 347
Query: 260 AL 261
AL
Sbjct: 348 AL 349
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L ++F FG +LSV+V R+ +G SRG G++ A+ A+ +
Sbjct: 193 IYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRD-NSGHSRGFGFVNFEKHEEAQKAVDHM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G +V G+++ V + R + K + Y+ + LYV NL ++ E L
Sbjct: 252 NGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVN-LYVKNLDDSISDEKL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V +PL+
Sbjct: 311 RTVFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGCI----VGTKPLY 364
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V+ + E G SRG G++ + +A+ AI +
Sbjct: 101 VFIKNLEDSIDSKALYDTFSTFGNILSCKVACD-EHG-SRGFGFVHFETNEAAQQAISTM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F S R EA + F +YV NL + + L++
Sbjct: 159 NGMLLNDRKV---FVGHFKSH-REREAELGAQALAFT-----NIYVKNLHVDMDEQGLQD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F FG ++S +V+ D G +R FGF++F E A+ +NG
Sbjct: 210 LFFEFGKMLSVKVMRDNSGH-SRGFGFVNFEKHEEAQKAVDHMNG 253
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNVF---------IKNLEDSIDSKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F +++A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETNEAAQQAISTMNGML 162
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 18/148 (12%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGG--------------NEVDD--DSSVEEPR 94
H GF V EEA D +NGK+ G NE+ + ++ +
Sbjct: 229 HSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQ 288
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S +L +F P+G + S +V E G S+G G++ S A
Sbjct: 289 TRYQGVNLYVKNLDDSISDEKLRTVFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEA 346
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 347 TKAVTEMNGCIVGTKPLYVALAQRKEER 374
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 43/201 (21%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N +D L MF+ +G V SV V R+ + G SRG G++ S A+ A+ A+
Sbjct: 36 VYIKNFGDKYDEKTLQVMFEKYGVVKSVAVMRDRD-GNSRGFGFVAYDSHEEAQAAVEAM 94
Query: 162 DGSDVGG--------------------REMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+G ++ G +E+R ++ R + + +
Sbjct: 95 NGQEIEGASGSTDILYVGRAQKKQERQQELRGQYEQQKQERIQRFQGV------------ 142
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK---GQTTRVFGFISFSSDAERD 258
LYV NL V ++LR F +GT+ SA+++ D + G+ +R FGF+ FSS E
Sbjct: 143 --NLYVKNLDDNVTDDELREAFATYGTITSAKIMSDGECSTGERSRGFGFVCFSSPEEAT 200
Query: 259 AALS-LNGTVESHTVAFQPLF 278
A++ +NG + V +PL+
Sbjct: 201 KAVTEMNGRI----VGTKPLY 217
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANQAVEDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P TG S+G G+++ A A+ +
Sbjct: 189 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-TGKSKGFGFVSYEKHEDANKAVEEM 247
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 248 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 304
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ A V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 305 KLRKEFSPFGSITRAEVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 357
Query: 276 PLF 278
PL+
Sbjct: 358 PLY 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 97 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 154
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V E L+
Sbjct: 155 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDESLK 204
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F +FG +S +V+ D G+ ++ FGF+S+ + + A+ +NG S V F
Sbjct: 205 ELFSQFGKTLSVKVMRDPTGK-SKGFGFVSYEKHEDANKAVEEMNGKEISGKVIF 258
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ EV E G S+G G++ S
Sbjct: 281 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITRAEVML--EDGRSKGFGFVCFSS 338
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 339 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 370
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 14/187 (7%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A+ LYV N E ++F+ G ++S V R+ ++G SRG G+++ + +A+
Sbjct: 197 AKYTNLYVKNFRDDISDDEFRDLFEQCGKIVSCVVMRD-DSGKSRGFGFVSYETHEAAQK 255
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ L+ + R M V + + R+ R E K F LYV NL
Sbjct: 256 AVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQKKQEMMKRF---QGVNLYVKNLDD 312
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHT 271
+ LR F FGT+ SA+V+ D KG +R FGF+ FSS E A++ +NG +
Sbjct: 313 VIDDAKLRQEFANFGTITSAKVMSDEKG-ISRGFGFVCFSSPEEATKAVTEMNGRI---- 367
Query: 272 VAFQPLF 278
+ +PL+
Sbjct: 368 IISKPLY 374
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D + + F FG +LS +++ + E G S+G ++ + +A AI +
Sbjct: 109 IFIKNLEKDIDNKAIYDTFSAFGNILSCKIALD-ENGNSKGYAFVHFETQEAANRAIEKV 167
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ F SR E + + K LYV N + ++ R+
Sbjct: 168 NGMLLSGKKV---FVGHFMSRKERMEKIGNLAAKYT------NLYVKNFRDDISDDEFRD 218
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F + G +VS V+ D G+ +R FGF+S+ + +A + A +LN
Sbjct: 219 LFEQCGKIVSCVVMRDDSGK-SRGFGFVSYETHEAAQKAVETLN 261
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +E R + LYV NL D ++L + F FGT+ S +V + E GISRG G++
Sbjct: 290 EQKKQEMMKRFQGVNLYVKNLDDVIDDAKLRQEFANFGTITSAKVMSD-EKGISRGFGFV 348
Query: 147 TMGSINSAKNAIIALDG 163
S A A+ ++G
Sbjct: 349 CFSSPEEATKAVTEMNG 365
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV EP +R ++V NLP S + L +MFK FG ++S +V+ E G SRG G++
Sbjct: 100 SVREPDARRNGVGNVFVKNLPESITNAVLQDMFKKFGNIVSCKVA-TFEDGKSRGYGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++A AI L+ + V G+E+ V + R + E + +Y+
Sbjct: 159 FEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDRAKAEEKYTN-------------VYM 205
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
NL V + LR F FG +VS + D G + + F++F + R AA ++NGT
Sbjct: 206 KNLDADVNEDLLREKFSEFGKIVSLAIAKDENG-LCKGYAFVNFDKPEDARWAAETMNGT 264
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 88/176 (50%), Gaps = 4/176 (2%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
++ + +Y+ NL + L E F FG ++S+ ++++ E G+ +G ++
Sbjct: 195 KAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKD-ENGLCKGYAFVNFDKPED 253
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA-EALISPPKKIFVYESPHKLYVGNLSW 212
A+ A ++G+ G + + V + R + E ++ + +YV N++
Sbjct: 254 ARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMKAKVSNIYVKNINV 313
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNGTV 267
V E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G +
Sbjct: 314 GVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHGKM 368
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 19/177 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L + F F ++ SV + ++ TG S GY S A AI
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASTGRSLCYGYANFLSRQDANLAIEKK 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ +RV +S+ RN ++V NL ++ L++
Sbjct: 86 NHSLLNGKMIRVMWSVREPDARRNGVG---------------NVFVKNLPESITNAVLQD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +FG +VS +V G+ +R +GF+ F + DAA + + S TVA + ++
Sbjct: 131 MFKKFGNIVSCKVATFEDGK-SRGYGFVQFEQE---DAAHAAIEKLNSTTVAGKEIY 183
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + +L E F FG LSV V R+ E G SRG G++ A+ A+ +
Sbjct: 193 IYIKNFGDNLTDEKLKEAFSAFGKTLSVRVMRD-EKGRSRGFGFVNYAHHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+ + V + R + K +I Y+ + LYV NL ++ E L
Sbjct: 252 NGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRYQGVN-LYVKNLDDSIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F +GT+ SA+V+ + GQ ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKEFSPYGTITSAKVMTE-AGQ-SKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYQKFSPAGPIVSIRVCRDIITRRSLGYAYINFQQPADAECALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + N+ ++ + L +
Sbjct: 73 NYDVIKGRPIRIMWS------QRDPALRKSGVGNIF---------IKNIDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D +G ++ +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDERG--SKGYGFVHFETQEAANRAIETMNGML 162
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------------NEVDD--DSSVEEPRSRA 97
GF V E+A DE+NGK+ G E+ D ++ R
Sbjct: 232 GFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQLKQDRIQRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL S D L + F P+GT+ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYVKNLDDSIDDERLRKEFSPYGTITSAKVM--TEAGQSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFS 176
+ ++G V + + V +
Sbjct: 350 VTEMNGRIVATKPLYVALA 368
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 11/194 (5%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S++EE RS+ +YV N+ S D EMF PFGT +S + + E G S+ G++
Sbjct: 235 STIEEKRSKF--TNIYVKNIDASVDQKAFEEMFHPFGTTVSCVLMVD-EEGNSKEFGFVN 291
Query: 148 MGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
+ A+ A+ + ++GG+++ R + + R I +K+ Y+ +
Sbjct: 292 YENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQYEKIRE-EKLSKYQGVN- 349
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L+V N+ ++ E LR F FG + S +++ D K ++ FGF+ FS+ E A++
Sbjct: 350 LFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSNPDEATKAVT-- 407
Query: 265 GTVESHTVAFQPLF 278
+ + +A +P++
Sbjct: 408 -EMNNRMLANKPIY 420
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 18/212 (8%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-SRARPCELYVCNL 107
RS G+ + L + D E + D +N V GN V S +P RA +++ NL
Sbjct: 104 RSLGYGYINYLDIADAERAL--DTLN-YTTVRGNPVRIMWSNRDPALRRAGTGNIFIKNL 160
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F FG +LS +++ + E S G G++ ++ A+NAI ++G +
Sbjct: 161 HTTIDHKALHDTFSAFGKILSCKIAMDGER--SLGHGFVHYETMEMAENAIKHVNGMLLN 218
Query: 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227
+++ V I R+ + I + F +YV N+ +V + F FG
Sbjct: 219 DQQVYVGLHISKKERS----STIEEKRSKFT-----NIYVKNIDASVDQKAFEEMFHPFG 269
Query: 228 TVVSARVLHDRKGQTTRVFGFISFSS--DAER 257
T VS ++ D +G ++ FGF+++ + DA R
Sbjct: 270 TTVSCVLMVDEEG-NSKEFGFVNYENHEDARR 300
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 18/172 (10%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A P LY+ +L S + L E+F G V S+ V R+ T S G GY+ I A+
Sbjct: 62 ATPASLYIGDLEPSVTEAMLFEVFNMVGPVASIRVCRDAVTRRSLGYGYINYLDIADAER 121
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A+ L+ + V G +R+ +S + + R A +++ NL +
Sbjct: 122 ALDTLNYTTVRGNPVRIMWS-NRDPALRRA--------------GTGNIFIKNLHTTIDH 166
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ L + F FG ++S ++ D G+ + GF+ + + + +A +NG +
Sbjct: 167 KALHDTFSAFGKILSCKIAMD--GERSLGHGFVHYETMEMAENAIKHVNGML 216
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 11/114 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE S+ + L+V N+ S D +L + F FG + S ++ + +TGIS+G G++ +
Sbjct: 339 EEKLSKYQGVNLFVKNIDESIDDEKLRQEFSVFGAITSTKIMVDEKTGISKGFGFVCFSN 398
Query: 151 INSAKNAIIALDGSDVGGREM-----------RVRFSIDMNSRTRNAEALISPP 193
+ A A+ ++ + + + R + + M R A + PP
Sbjct: 399 PDEATKAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRAMRAHQQMMPP 452
>gi|30179878|sp|O01671.3|SXL_MEGSC RecName: Full=Sex-lethal homolog
gi|9743624|emb|CAC01696.1| sex-lethal homologue [Megaselia scalaris]
Length = 321
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 23 TPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+P+ F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 24 SPQDTDFSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN 79
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
L V LP+ EL +F+ G + + + R+ +TG S G
Sbjct: 80 -------------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYG 120
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G++ GS A AI L+G V + ++V F+ + R+
Sbjct: 121 YGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN--------------- 165
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LYV NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 166 --LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E+F +G LS+ V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K ++ Y+ + LYV NL + E L
Sbjct: 252 NGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVN-LYVKNLDDGLDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGLDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ F E ++F PFGT+ S+ + ++ + G S+G G
Sbjct: 95 DRESKFEE--MKANYTNIYVKNIDLEFSDEEFEKLFVPFGTITSIYLEKD-QDGKSKGFG 151
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA A+ L+ ++ G+++ V + R + + ++ Y+
Sbjct: 152 FVNYETHESAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYESTRVERLSKYQGV 211
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FG++ SA+V+ D G+ ++ FGF+ FSS E A++
Sbjct: 212 N-LFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVDEAGK-SKGFGFVCFSSPEEATKAIT 269
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 270 ---EMNQRMILGKPLY 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ + L+V NL S D +L E FKPFG++ S +V + E G S+G G++ S A
Sbjct: 206 SKYQGVNLFVKNLDDSIDSEKLEEEFKPFGSITSAKVMVD-EAGKSKGFGFVCFSSPEEA 264
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
AI ++ + G+ + V + + R E I
Sbjct: 265 TKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQ 301
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + + G S+ G++ + +A+ AI +
Sbjct: 17 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 75
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + + + +YV N+ E+
Sbjct: 76 NGMLLNDREVYVGKHISKKDRESKFEEMKA---------NYTNIYVKNIDLEFSDEEFEK 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F FGT+ S + D+ G+ ++ FGF+++ +
Sbjct: 127 LFVPFGTITSIYLEKDQDGK-SKGFGFVNYET 157
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + EMF FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEKFQEMFAQFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ A A+ AL+ SD+ G ++ V + N R + + K+ Y+ +
Sbjct: 265 NYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN- 323
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRSENGK-SKGFGFVCFSTPEEATKAIT-- 380
Query: 265 GTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 -EKNQQIVAGKPLY 393
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEKFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269
F +FG +VSA + D G+ + FGF+++ + DA ++ ES
Sbjct: 238 MFAQFGPIVSASLEKDADGK-LKGFGFVNYEN--HEDAVKAVEALNES 282
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIDQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R+ E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRS-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L +++ Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERLSRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG + SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGAITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG + S +V E G S+G G++ S A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGAITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ N F + L ++F+ +G+++S V ++ E G+S+G G+++ S +A A+ A+
Sbjct: 197 VFIKNFGEDFTDTMLYDVFEKYGSIVSAVVMKDGE-GLSKGFGFVSFESHEAASAAVQAV 255
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
S V GR++ + N R+R + ++ Y+ + LY+ NL + E L
Sbjct: 256 HNSIVNGRQVYCGRAQKKNERSRELMRRKEEQRQERLSRYQGVN-LYIKNLEDTLGEEKL 314
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
++ F +FG++ SA+++ D G ++ FGF+ FSS E A++ +NG + V +PL+
Sbjct: 315 KSEFSKFGSITSAKIMTDEFGH-SKGFGFVCFSSPEEATKAVTEMNGRI----VVSKPLY 369
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 73/167 (43%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 17 LYVGDLLPDVNEAVLFEQFSKAGPVLSIRVCRDLITKRSLGYAYVNFQQPADAERALDTM 76
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ R+ +S S R+ I ++ NL ++ + L +
Sbjct: 77 NYEPIKGQPCRIMWSQRDPSLRRSGVGNI---------------FIKNLDKSIDHKALYD 121
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D + ++ FGF+ F D A+ +NG +
Sbjct: 122 TFSAFGNILSCKVATD-GNRHSKGFGFVHFDEQEAADLAIEKVNGKL 167
>gi|300120130|emb|CBK19684.2| unnamed protein product [Blastocystis hominis]
Length = 309
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
+P SFD L E FK G + V RN +T +SRG G++ + +A +A+DG++
Sbjct: 11 IPWSFDNDALYEFFKGCGAISDCYVIRNKKTNLSRGFGFVHFED-KAGMDACLAMDGTEC 69
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GR +++ S + T +E Y +K+ V LSW E L + ++
Sbjct: 70 EGRTLKITISDKERAPTPRSE-----------YNDKNKVIVNCLSWNTTSESLAEYLSQY 118
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
G + +VL+D K Q +R F ++A+
Sbjct: 119 GELEDCKVLYDNKTQHSRGLAVARFKNEAD 148
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ W+ + L F G + V+ ++K +R FGF+ F A DA L+++GT
Sbjct: 11 IPWSFDNDALYEFFKGCGAISDCYVIRNKKTNLSRGFGFVHFEDKAGMDACLAMDGT 67
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 19/181 (10%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ +P +R + +++ NL ++ D L + F FG +LS +++ + +G S+G G++
Sbjct: 100 SIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATD-ASGQSKGHGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVR-FSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
S SA+NAI L+G + +++ V F R ++ E+ +S K + +Y
Sbjct: 159 FESEESAQNAIDKLNGMLINDKQVYVGPF-----QRKQDRESALSGTKF-------NNVY 206
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLN 264
V NL A DL++ FG +G + SA V+ D G+ ++ FGF++F++ DA + A +LN
Sbjct: 207 VKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGK-SKGFGFVNFANVEDAAK-AVEALN 264
Query: 265 G 265
G
Sbjct: 265 G 265
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 24/224 (10%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCE----------LYVCNLPRSFDISELLEM 119
E N D + G ++D P R + E +YV NL + ++L +
Sbjct: 163 ESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSI 222
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----R 174
F +G + S V R+ + G S+G G++ ++ A A+ AL+G + G+E V +
Sbjct: 223 FGEYGAITSAVVMRDVD-GKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKK 281
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
++ + RN + S + + Y + LY+ NL +V E+LR F FGT+ S +V
Sbjct: 282 SERELELKERNEQ---STKETVDKYHGTN-LYIKNLDDSVGDEELRELFSEFGTITSCKV 337
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
+ D G +R GF++FS AL G + VA +PL+
Sbjct: 338 MRDPSG-ISRGSGFVAFSIAEGASWAL---GEMNGKMVAGKPLY 377
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L ++F V+SV + R+ T S G GY+ + A AI L
Sbjct: 26 LYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ +SI S ++ A +++ NL A+ + L +
Sbjct: 86 NFTPLNGKTIRIMYSIRDPSARKSGAA---------------NVFIKNLDKAIDHKALFD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S ++ D GQ ++ GF+ F S ++ ++A LNG +
Sbjct: 131 TFSAFGNILSCKIATDASGQ-SKGHGFVQFESEESAQNAIDKLNGML 176
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
++ S +E + LY+ NL S EL E+F FGT+ S +V R+P +GISRG G+
Sbjct: 292 NEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDP-SGISRGSGF 350
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
+ A A+ ++G V G+ + V + R +A S + + +
Sbjct: 351 VAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAI 403
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P TG S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEEANKAVEEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + V + R R E L +++ Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQ--ERLSRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
EEA +E+NGKD VG + + E R SR + LY+ NL
Sbjct: 242 EEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS D A +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPDEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ +++ NL ++ + L
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S + A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS D A +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPDEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + DA A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S + A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 WKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 95/192 (49%), Gaps = 16/192 (8%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
D + G + S +P R R ++V NL +S + L + FG +LS +V +
Sbjct: 75 DVIKGKPLRIMWSQRDPSLRKRGVGNIFVKNLDKSINNKALYDTVSAFGNILSCKVVCD- 133
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
E G S+G G++ + +A+ AI ++G + R++ F SR + EA + K
Sbjct: 134 ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKV---FVGQFKSR-KEREAELGARAK 188
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--S 253
F +Y+ N + E L++ FG+FG +S +V+ D G+ ++ FGF+SF
Sbjct: 189 EFP-----NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHE 242
Query: 254 DAERDAALSLNG 265
DA++ A +NG
Sbjct: 243 DAQK-AVDEMNG 253
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + G+ +R+ +S D + R R ++V NL ++ + L
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKRGV----------------GNIFVKNLDKSINNKALY 116
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 117 DTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLWKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIAL 161
YV N+P + ++LL+ F+PFG VLS V + N +RG G++ ++A A+ AL
Sbjct: 225 YVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDAL 284
Query: 162 DGSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G EM V + + R R K +I Y+ + LYV NL +
Sbjct: 285 NGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVN-LYVKNLDDQL 343
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVES 269
++LR F GT+ S+RV+ D G +R FGF+ FS+ E + A++ +NG + S
Sbjct: 344 SDDELREAFAECGTITSSRVMRDPNG-NSRGFGFVCFSTPEEANKAVAEMNGKLIS 398
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L + F FG +LS +V+ TG S+G GY+ + +A AI +
Sbjct: 135 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ F R +A + YV N+ DL
Sbjct: 195 NGMLIAGTEV---FVGQFQKRQDRPDA-----------DDWTNCYVKNIPTQWTDADLLK 240
Query: 222 HFGRFGTVVSARVLHDRKG-QTTRVFGFISF-SSDAERDAALSLNG 265
F FG V+SA V+ D R FGF+++ SDA A +LNG
Sbjct: 241 EFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNG 286
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA------------- 97
H GF V + A D +NGK G +D + V + + R+
Sbjct: 262 HNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQL 321
Query: 98 --------RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ LYV NL EL E F GT+ S V R+P G SRG G++
Sbjct: 322 KMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDP-NGNSRGFGFVCFS 380
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A+ ++G + G+ + V + R EA
Sbjct: 381 TPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEA 419
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV ++ + L E+F G V S+ V R+ T S G Y+ ++ A+ A+ +
Sbjct: 47 LYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVADAERALDTM 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G R+ +S S ++ ++V NL ++ + L +
Sbjct: 107 NFTSIKGVPCRIMWSQRDPSLRKSGVG---------------NIFVKNLDTSIDNKALYD 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V + ++ +G++ +
Sbjct: 152 TFSLFGNILSCKVAIEHTTGNSKGYGYVHY 181
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D + + F FG +LS +V+++ E G S+G G++ + +A +I +
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + E LRN
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDLSEEQLRN 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F +FG + S +V+ G+ ++ FGF++F S +A A +LNG V +PL+
Sbjct: 211 MFEKFGKITSYKVMSKDDGK-SKGFGFVAFESPEAAETAVDALNG---KELVEGKPLY 264
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L MF+ FG + S +V + + G S+G G++ S +A+ A+ AL
Sbjct: 194 VYVKNFGEDLSEEQLRNMFEKFGKITSYKVM-SKDDGKSKGFGFVAFESPEAAETAVDAL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R EAL +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQQELKRRFEALKM--ERLNRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQ----TTRV--FGFISFSSDAERDAALS-LNGTVES 269
E LR F FGT+ SA+V+ + TTR FGF+ FSS E A++ +NG +
Sbjct: 310 ERLRKEFAPFGTITSAKVMIEENKTESFITTRSKGFGFVCFSSPEEATKAVTEMNGRI-- 367
Query: 270 HTVAFQPLF 278
V +PL+
Sbjct: 368 --VGSKPLY 374
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L + F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S S ++ +++ NL ++ + +
Sbjct: 71 TMNFDLIRGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDRSIDNKAM 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V D G T++ +GF+ F ++ + ++ +NG +
Sbjct: 116 YDTFSAFGNILSCKVAQDENG-TSKGYGFVHFETEEAANKSIEKVNGML 163
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A ++V NL + EL E+F +G + S + ++ E G S+G G
Sbjct: 219 DRESKFEE--MKANFTNVFVKNLAPEYTDQELKELFSAYGPITSSYLEKDLE-GKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGG------REMRVRFSIDMNSRTRNAEALISPPKKIFV 198
++ + N A A+ L+ ++ G R + R ++ R A L +K+
Sbjct: 276 FVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQYEATKL----EKLSK 331
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
Y+ + L++ NL + E L N F FG + SARV+ D +G+ ++ FGF+ FSS E
Sbjct: 332 YQGVN-LFIKNLDDTIDSEKLENEFKPFGNITSARVMVDEQGK-SKGFGFVCFSSPEEAT 389
Query: 259 AALSLNGTVESHTVAFQPLF 278
A++ + V +PL+
Sbjct: 390 KAIT---EMNQRMVEGKPLY 406
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + + AI L
Sbjct: 53 LYVGELNTSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFVKFDDGEQAIEDL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S RN E I ++ NL A+ + L +
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGEGNI---------------FIKNLHPAIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D G ++ FGF+ +
Sbjct: 158 TFSAFGRILSCKVATDELG-NSKCFGFVHY 186
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + E G S+ G++ + +A+ AI +
Sbjct: 141 IFIKNLHPAIDNKALHDTFSAFGRILSCKVATD-ELGNSKCFGFVHYETAEAAEAAIENV 199
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + K F ++V NL+ ++L+
Sbjct: 200 NGMLLNDREVFVGKHVSKKDRESKFEEM----KANFT-----NVFVKNLAPEYTDQELKE 250
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +G + S+ + D +G+ ++ FGF++F D DA +++ + + +A QP++
Sbjct: 251 LFSAYGPITSSYLEKDLEGK-SKGFGFVNF--DNHNDAVKAVD-ELNNKEIAGQPIY 303
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 93/180 (51%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 WKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCKVVCD-ENG-SKGYGFVHFETHEAAERAIEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNDRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S Y+ A++A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDLITRGSSNYAYVNFQHPKDAEHALHTM 72
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + G+ +R+ +S D + R R ++V NL ++ + L
Sbjct: 73 NFDVIKGKPLRIMWSQRDPSLRKRGV----------------GNIFVKNLDKSINNKALY 116
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 117 DTVSAFGNILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLWKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 118 RSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVD-EAGQSKGFGFVQYDKEEAAQ 176
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V R E S K F + ++V NLS +
Sbjct: 177 NAIKSLNGMLINDKPVFV------GPFVRKQERDHSFDKTKF-----NNVFVKNLSESTT 225
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
EDL FG +G + SA V+ G+ +R FGFI+F + DA A LNG
Sbjct: 226 KEDLLKIFGEYGDITSAVVMIGMDGK-SRCFGFINFENPDAASHAVQELNG 275
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 36 LYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEVL 95
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 96 NFAALNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKTIDNKTLHE 140
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG +
Sbjct: 141 TFSSFGTILSCKVAVDEAGQ-SKGFGFVQYDKEEAAQNAIKSLNGML 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G + S V + G SR G++ + ++A +A+ L
Sbjct: 215 VFVKNLSESTTKEDLLKIFGEYGDITSAVVMIGMD-GKSRCFGFINFENPDAASHAVQEL 273
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R ++L K Y+ + LY+ NL ++
Sbjct: 274 NGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADK---YQGLN-LYLKNLDDSIGD 329
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ L F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG + ++ +
Sbjct: 330 DQLCELFSNFGKITSYKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKM----ISGK 384
Query: 276 PLF 278
PL+
Sbjct: 385 PLY 387
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S+++ + + LY+ NL S +L E+F FG + S +V R+ + G+S+G G++
Sbjct: 303 EQSLKDAADKYQGLNLYLKNLDDSIGDDQLCELFSNFGKITSYKVMRD-QNGLSKGSGFV 361
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ A A+ ++G + G+ + V F+ R + + P
Sbjct: 362 AFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQVTVLKP 408
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L E F FG+VLS +V+ + G S+G G++ + +A++AI
Sbjct: 121 ANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 179
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +E+ V + R EA SP F +YV NLS EDL
Sbjct: 180 RLNGMLINDKEVFVGRFVRHQERI---EATGSPK---FT-----NVYVKNLSETTSDEDL 228
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
+ F +G + SA V+ D+ G+ ++ FGF++F S D+ A LNGT
Sbjct: 229 KKFFSNYGAITSAIVMKDQSGK-SKGFGFVNFQSPDSAAAAVEKLNGT 275
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 34/192 (17%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L + F +G + S V ++ ++G S+G G++ S +SA A+ L
Sbjct: 214 VYVKNLSETTSDEDLKKFFSNYGAITSAIVMKD-QSGKSKGFGFVNFQSPDSAAAAVEKL 272
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G+ + E++ RF + NSR +A LY
Sbjct: 273 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAA--------------NLY 318
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E A+ +LNG
Sbjct: 319 LKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEE--ASRALNG- 374
Query: 267 VESHTVAFQPLF 278
+ + +PL+
Sbjct: 375 MNGKMIGKKPLY 386
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL D +L E+F FG++ S +V +
Sbjct: 291 GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD- 349
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ G+S+G G++ + A A+ ++G +G + + V
Sbjct: 350 QQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 387
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDGRLKELFSKYGKTLSVKVMTDP-SGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS D A +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPDEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S + A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 SKPLYVALA 368
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 13/211 (6%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G V + +E RA+ +Y+ N+ + + EL EMFK +GT+ S +V
Sbjct: 155 LNGKKVFVGRFVGRNDREKELGQRAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKV 214
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-GGREMRVRFSIDMNSRTRNAEALI 190
+ G SRG G++ A+ A+ L G G+ V + R + +
Sbjct: 215 MFK-DDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKF 273
Query: 191 SPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
K +I Y+ + LYV NL + E LR F FGT+ SA+V+ D ++ FGF
Sbjct: 274 EQYKIERINRYQGVN-LYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDG--RSKGFGF 330
Query: 249 ISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ FSS E A++ +NG + V +PL+
Sbjct: 331 VYFSSPEEATKAVTDMNGRI----VGTKPLY 357
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 11/161 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D + + F FG +LS +V+++ ETG S+G G++ + SA +I +
Sbjct: 92 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ETGNSKGYGFVHFETKQSATQSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V + N R E + K++ +Y+ N+ V ++L
Sbjct: 151 NGMLLNGKKVFVGRFVGRNDR----EKELGQRAKLYT-----NVYIKNIDENVNEKELFE 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F ++GT+ S +V+ G ++R FGF++F E + A++
Sbjct: 202 MFKKYGTITSCKVMFKDDG-SSRGFGFVAFEDPKEAEKAVT 241
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F G +LS+ V R+ T S G Y+ +I A+ A+
Sbjct: 2 ASLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALD 61
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G MR+ +S R+ S +F + NL ++ + +
Sbjct: 62 TMNFDILKGHPMRIMWS------QRDPSLRKSGVGNVF---------IKNLDRSIDNKAM 106
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA------ERDAALSLNG 265
+ F FG ++S +V D G ++ +GF+ F + E+ + LNG
Sbjct: 107 YDTFSAFGNILSCKVAQDETG-NSKGYGFVHFETKQSATQSIEKVNGMLLNG 157
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 5/170 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N P D +L EMF FG + S V ++ E G S+G G++ + A+ A+ A+
Sbjct: 183 IYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSE-GKSKGFGFVCYLNPEHAEAAVAAM 241
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
G ++GGR + + R + + K + Y S LYV NL + E L
Sbjct: 242 HGKEIGGRSLYASRAQRKEERQEELKLRLEKQKAERRSKYVSNVNLYVKNLDDEIDDERL 301
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVE 268
+ F ++G + SA+V+ D + ++ FGF+ F++ + A++ NG VE
Sbjct: 302 KEIFSKYGPISSAKVMTDSNNR-SKGFGFVCFTNPEQATKAVTEANGRVE 350
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ + EL + F FG +LS +++ + E G S+G G++ + AK AI +
Sbjct: 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRAIQKV 150
Query: 162 DGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+ + G+ + V I D S+ R K+ F + +YV N E
Sbjct: 151 NNMSICGKVVYVGNFIPRSDRKSQNR---------KQKF-----NNIYVKNFPPETDDEK 196
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L+ F FG + SA V+ D +G+ ++ FGF+ + + +AA++
Sbjct: 197 LKEMFTEFGEIKSACVMKDSEGK-SKGFGFVCYLNPEHAEAAVA 239
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + +L F G V V R+ + S G GY+ A+ A+ +
Sbjct: 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V GR +R+ +S R+ S IF+ NL+ ++ ++L +
Sbjct: 64 NYEVVMGRPIRIMWS------QRDPSLRKSGLGNIFI---------KNLAKTIEQKELYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
F FG ++S ++ D G ++ +GF+ F ++
Sbjct: 109 TFSLFGRILSCKIAMDENG-NSKGYGFVHFENE 140
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L E+F FG VLS +V++N E G SRG G++ S SA AI L
Sbjct: 211 IFVKNLSSSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFTSQESADEAIGNL 269
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS R++ V I + R+ N + + LY+ +L + E ++
Sbjct: 270 NGSLFNDRKLHVATFIKKSERSANNDDKFT------------NLYMKHLDDDITEELVKL 317
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F +FG++VS +++ R ++ FGF+SF + ++ A ++NG +
Sbjct: 318 KFSQFGSIVSVKIM-KRPDGSSLGFGFVSFQNPESAIKAQSTMNGML 363
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L E F GTV SV V R+ T S GY+ S A A+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V + +RV +S R+ +A S IF V NLS +V L+
Sbjct: 183 NHSLVLDKPIRVMWS------NRDPDARRSGVGNIF---------VKNLSSSVDNASLQE 227
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F +FG V+S +V + G T+R +GF+ F+S D A+ +LNG++
Sbjct: 228 LFSKFGDVLSCKVAKNEDG-TSRGYGFVQFTSQESADEAIGNLNGSL 273
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 112 DISELLEMFK--PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169
DI+E L K FG+++SV++ + P+ G S G G+++ + SA A ++G +G +
Sbjct: 309 DITEELVKLKFSQFGSIVSVKIMKRPD-GSSLGFGFVSFQNPESAIKAQSTMNGMLLGSK 367
Query: 170 EMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
+ V + R + + L + +I + +Y+ N+ V + LR F FG
Sbjct: 368 ALYVARAQKKEERKQYLQRLHEEKRNEIMTRCNESNVYIKNIHDEVDDDALRARFVEFGN 427
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ SA+V+ D KG +R FGF+ +S+ E +A++
Sbjct: 428 ITSAKVMRDDKG-ISRGFGFVCYSTPEEAKSAVN 460
>gi|357440095|ref|XP_003590325.1| 33 kDa ribonucleoprotein [Medicago truncatula]
gi|355479373|gb|AES60576.1| 33 kDa ribonucleoprotein [Medicago truncatula]
Length = 156
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 20/129 (15%)
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRF--------SIDMNSRTRNAEALISPPKKIFVY 199
MG++ A+ AI DG+ VGGR ++V F + M S R
Sbjct: 1 MGNVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRG------------YV 48
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+SPHK+Y GNL W + + LR F + ++SA+V+++R +R +GF+SF + + +
Sbjct: 49 DSPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEV 108
Query: 260 ALSLNGTVE 268
ALS VE
Sbjct: 109 ALSAMNGVE 117
>gi|226499642|ref|NP_001147738.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|195613392|gb|ACG28526.1| plastid-specific 30S ribosomal protein 2 [Zea mays]
gi|414585685|tpg|DAA36256.1| TPA: plastid-specific 30S ribosomal protein 2 [Zea mays]
Length = 272
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 82/166 (49%), Gaps = 13/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF E+ ++F GTV VEV + + G +RG ++TM + A A
Sbjct: 67 KLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKD-GRNRGFAFVTMSTAEEAAAAADK 125
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR ++V FS + E HKLYV NL W + +++
Sbjct: 126 LNSHDVMGRTIKVEFSKSFRRPAPPPPPGT-------IIER-HKLYVSNLPWKARAPNVK 177
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
F F +SA V+ D +GF+SF + E +AAL+ L+G
Sbjct: 178 EFFANFNP-LSANVIFDNGKAAG--YGFVSFGTKEEAEAALTELDG 220
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 187 EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
EA +P + E KLYV NL W+ ++ F + GTV V+ + G+ R F
Sbjct: 50 EAQAAPVAEDEQGEKRRKLYVANLPWSFPAPEIEKLFAQHGTVKDVEVIKGKDGR-NRGF 108
Query: 247 GFISFSS 253
F++ S+
Sbjct: 109 AFVTMST 115
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 8/180 (4%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + KK + KLYV N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKKERIRGCQVVKLYVKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS DA + A +NG +
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDALK-AMTEMNGRI 356
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRSSLGYAYVNFLHLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIAL 161
YV N+P + ++LL+ F+PFG VLS V + N +RG G++ ++A A+ AL
Sbjct: 171 YVKNIPTQWTDADLLKEFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDAL 230
Query: 162 DGSDVGG-----REMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAV 214
+G EM V + + R R K +I Y+ + LYV NL +
Sbjct: 231 NGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQLKMERINKYQGVN-LYVKNLDDQL 289
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVES 269
++LR F GT+ S+RV+ D G +R FGF+ FS+ E + A++ +NG + S
Sbjct: 290 SDDELREAFAECGTITSSRVMRDPNG-NSRGFGFVCFSTPEEANKAVAEMNGKLIS 344
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L + F FG +LS +V+ TG S+G GY+ + +A AI +
Sbjct: 81 IFVKNLDTSIDNKALYDTFSLFGNILSCKVAIEHTTGNSKGYGYVHYETAEAATEAIAKI 140
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ F R +A + YV N+ DL
Sbjct: 141 NGMLIAGTEV---FVGHFQKRQDRPDA-----------DDWTNCYVKNIPTQWTDADLLK 186
Query: 222 HFGRFGTVVSARVLHDRKG-QTTRVFGFISF-SSDAERDAALSLNG 265
F FG V+SA V+ D R FGF+++ SDA A +LNG
Sbjct: 187 EFEPFGKVLSAVVMKDNANPDHNRGFGFVNYEESDAAHKAVDALNG 232
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 22/159 (13%)
Query: 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRA------------- 97
H GF V + A D +NGK G +D + V + + R+
Sbjct: 208 HNRGFGFVNYEESDAAHKAVDALNGKSYPAGEGLDTEMYVGKAQKRSERERELRNKFEQL 267
Query: 98 --------RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ LYV NL EL E F GT+ S V R+P G SRG G++
Sbjct: 268 KMERINKYQGVNLYVKNLDDQLSDDELREAFAECGTITSSRVMRDP-NGNSRGFGFVCFS 326
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A+ ++G + G+ + V + R EA
Sbjct: 327 TPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEA 365
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 90/174 (51%), Gaps = 16/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D + L +F FGT+LS +V E G S+G G++ S +SA A AL
Sbjct: 109 LYVKNLDASIDSAGLQSLFSKFGTILSCKVVE--EHGKSKGYGFVQFDSEDSALAARTAL 166
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + +++ V + + RT S + F LYV NLS + + N
Sbjct: 167 HDTMLKEKKLYVSRFVKKSERT----TATSYDELKFT-----NLYVKNLSKDMTQDAFHN 217
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG-TVESHTV 272
F FG ++SA ++ D G+ +R FGF+ F S DA++ A +LNG +ES T+
Sbjct: 218 MFSAFGEIISAVIMQDHNGK-SRGFGFVDFESPEDAKK-AVDALNGYQLESRTL 269
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + MF FG ++S + ++ G SRG G++ S AK A+ AL
Sbjct: 201 LYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQD-HNGKSRGFGFVDFESPEDAKKAVDAL 259
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE----SPHKLYVGNLSWAVKPE 217
+G + E R F ++ + L K IF LYV NL+ + +
Sbjct: 260 NGYQL---ESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALCIDND 316
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
L+ F G +VSA+V+ G +R FGF+ FSS E AL +LNG V
Sbjct: 317 KLQELFSCSGKIVSAKVMRYDNG-ASRGFGFVCFSSPEEAKKALNALNGAV 366
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+PR R LYV +L L +F G + +V + R TG S GY+
Sbjct: 14 DPRPR---LSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSLCYGYVNFYRP 70
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A A+ L+ + + G+ MR+ + RN A S LYV NL
Sbjct: 71 YDAYKALSNLNHTYLKGKLMRIMWC------QRNPCARKS---------GIGNLYVKNLD 115
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
++ L++ F +FGT++S +V+ + ++ +GF+ F S+ D+AL+
Sbjct: 116 ASIDSAGLQSLFSKFGTILSCKVVEEHG--KSKGYGFVQFDSE---DSALA 161
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LYV NL D +L E+F G ++S +V R + G SRG G++ S AK A
Sbjct: 300 KASNLYVKNLALCIDNDKLQELFSCSGKIVSAKVMRY-DNGASRGFGFVCFSSPEEAKKA 358
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
+ AL+G+ G+ + V + R + S P+
Sbjct: 359 LNALNGAVFQGKSLYVAMAQCKRDRQLALQTYFSVPQ 395
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 130 RSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMD-EAGQSKGFGFVQYEKEEAAQ 188
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V + R + + K F + ++V NLS +
Sbjct: 189 NAIKSLNGMLINDKPVFVGPFLRKQERDHSFD------KTKF-----NNVFVKNLSESTT 237
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
EDL FG +G++ SA V+ G+ +R FGFI+F + DA A LNG
Sbjct: 238 KEDLLKVFGEYGSITSAVVMIGMDGK-SRCFGFINFENPDAASRAVQELNG 287
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 48 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEVL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 108 NFAVLNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKTIDNKTLHE 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG +
Sbjct: 153 TFSSFGTILSCKVAMDEAGQ-SKGFGFVQYEKEEAAQNAIKSLNGML 198
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G++ S V + G SR G++ + ++A A+ L
Sbjct: 227 VFVKNLSESTTKEDLLKVFGEYGSITSAVVMIGMD-GKSRCFGFINFENPDAASRAVQEL 285
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R ++L K Y+ LY+ NL ++
Sbjct: 286 NGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKDAADK---YQG-LNLYLKNLDDSIGD 341
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ LR F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG + ++ +
Sbjct: 342 DQLRELFSNFGKITSYKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKM----ISGK 396
Query: 276 PLF 278
PL+
Sbjct: 397 PLY 399
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S+++ + + LY+ NL S +L E+F FG + S +V R+ + G+S+G G++
Sbjct: 315 EQSLKDAADKYQGLNLYLKNLDDSIGDDQLRELFSNFGKITSYKVMRD-QNGLSKGSGFV 373
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA-------------LISPP 193
+ A A+ ++G + G+ + V F+ R +A ++P
Sbjct: 374 AFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPR 433
Query: 194 KKIFVYESPHKLYVGNLSWAVKP 216
++ +P +L+ G A+ P
Sbjct: 434 LPMYPPMAPQQLFYGQAPPAMIP 456
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L E+F +G LSV+V +P TG SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMNDERLKELFDKYGKTLSVKVMTDP-TGKSRGFGFISYEKHEDANKAVEDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+++ G+ + R + ++ + + ++ ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEMLKQ-ERISRYQGVN-LYIKNLDDTIDDEK 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +PL
Sbjct: 310 LRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + DA A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|350417503|ref|XP_003491454.1| PREDICTED: hypothetical protein LOC100748299 [Bombus impatiens]
Length = 622
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 36/200 (18%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-------------- 130
D DSS+E+ + R ++V NLP+ +L ++FK FG + ++
Sbjct: 329 DKDSSLEDFKENERT--IFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKR 386
Query: 131 ---VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
++ + Y+ S S K A+ +++G G +RV S+ N R
Sbjct: 387 VAAITNELHPKMKSVYAYIRFESEESTKKAL-SVNGRKFEGNYIRVDMSMKSNDR----- 440
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
YE+ +++GNL + V + +RNHF R G + S R++ D + + FG
Sbjct: 441 -----------YETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFG 489
Query: 248 FISFSSDAERDAALSLNGTV 267
+++F S+ AL L+GT
Sbjct: 490 YVNFKSEDAVALALELDGTT 509
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 42 KLSSCWSRSHPAGFRSVLAVV---DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRAR 98
++++ + HP +SV A + EE+ +NG+ GN + D S++
Sbjct: 386 RVAAITNELHPK-MKSVYAYIRFESEESTKKALSVNGR-KFEGNYIRVDMSMKSNDRYET 443
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+++ NL + D + FK G + SV + R+ +TG+ +G GY+ S ++ A+
Sbjct: 444 KKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFKSEDAVALAL 503
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTR 184
LDG+ + RE+RV+ +ID + RT+
Sbjct: 504 -ELDGTTILNREIRVKPNIDQDKRTK 528
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +GT LSV+V + +G S+G G+++ S +AKNA+ +
Sbjct: 385 VYIKNFGDDMDDMRLKEVFSKYGTTLSVKVMTD-SSGKSKGFGFVSFASHEAAKNAVEEM 443
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V R + + + ++ F KLY+ NL + E LR
Sbjct: 444 NGKDINGQLIFVGRAQKKIERQAELKQMFEQLRQERFRRCRGVKLYIKNLDDTIDDEKLR 503
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG++ +V+ + ++ FG I FSS E A++ +NG +
Sbjct: 504 KEFASFGSISRVKVMQEEG--RSKGFGLICFSSHEEAIKAMTEMNGRI 549
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 85/185 (45%), Gaps = 18/185 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L + F G VLS+ + R+ T S G Y+ + A
Sbjct: 198 AKYRMASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLHVADA 257
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 258 QKALDTMNFDVIKGKSIRLMWS------QRDAYLRKSGIGNVFIK---------NLDKSI 302
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NGT+ +
Sbjct: 303 DNKTLYEHFSTFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGTLLKNCRV 360
Query: 274 FQPLF 278
F F
Sbjct: 361 FVSRF 365
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E R R +LY+ NL + D +L + F FG++ V+V + E G S+G G + S
Sbjct: 477 QERFRRCRGVKLYIKNLDDTIDDEKLRKEFASFGSISRVKVMQ--EEGRSKGFGLICFSS 534
Query: 151 INSAKNAIIALDGSDVGGREMRV 173
A A+ ++G +G + + +
Sbjct: 535 HEEAIKAMTEMNGRILGSKPLNI 557
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG +LSV+V + E G S+G G+++ A+ A+ +
Sbjct: 168 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 226
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + R + D ++ ++ ++ K I Y+ + LYV NL + E
Sbjct: 227 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIR-YQGIN-LYVKNLDDGIDDER 284
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L+ F FGT+ S +V+ + G ++ FGF+ FSS E A+S +NG + VA +PL
Sbjct: 285 LQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEMNGRI----VATKPL 338
Query: 278 F 278
+
Sbjct: 339 Y 339
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 76 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSD-ENG-SKGHGFVHFETEEAAERAIEKM 133
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF + EA + K F +Y+ N + E L
Sbjct: 134 NGMLLNDRKVFVGRFK-----SQKEREAELGTGTKEFT-----NVYIKNFGDRMDDETLN 183
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FGRFG ++S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 184 GLFGRFGQILSVKVMTDEGGK-SKGFGFVSFERHEDAQK-AVDEMNG 228
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVE----------EPRSRARPCELYVCNL 107
E+A DE+NGK+ VG + DD E + R + LYV NL
Sbjct: 217 EDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNL 276
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 277 DDGIDDERLQKEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVA 334
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 335 TKPLYVALAQRKEER 349
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 17/166 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL RS D + F FG +LS +V+ + E G+S+G G++ + SAK AI +
Sbjct: 121 IFVKNLDRSIDTKAFYDTFSHFGPILSCKVAMD-ENGVSKGYGFVHYDTEESAKEAIEKV 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G +GG+++ V I R P + V+ + LYV N + E L+
Sbjct: 180 NGMVIGGKKVEVSPFIKKQDRD---------PASVDVFTN---LYVRNFPVSWDEEALKQ 227
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
++G + S + D KG R F F++F+ + ++A +LNGT
Sbjct: 228 FLDKYGEITSMMIKEDGKG---RKFAFVNFAEPEMAKEAVEALNGT 270
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 12/216 (5%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE----EPRSRARPCELYVCNLPR 109
G+ V +E A +++NG +GG +V+ ++ +P S LYV N P
Sbjct: 160 GYGFVHYDTEESAKEAIEKVNGM-VIGGKKVEVSPFIKKQDRDPASVDVFTNLYVRNFPV 218
Query: 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--G 167
S+D L + +G + S+ + E G R ++ AK A+ AL+G+ + G
Sbjct: 219 SWDEEALKQFLDKYGEITSMMIK---EDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEG 275
Query: 168 GREMRVRFSIDMNSRTRNAEA-LISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
+ V D R ++ IS ++ LY+ NL + E L+ FG+F
Sbjct: 276 SEPLLVCPHQDKAKRQAFLKSQYISGLDGSIASKASSNLYIKNLDDSFTDESLQELFGQF 335
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
G++ S +++ D G +R FGF+ FS E A++
Sbjct: 336 GSITSCKIMRDASG-VSRGFGFVCFSRPEEATKAIA 370
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E+F G V S+ V R+ T S G Y+ S+ A+ A+
Sbjct: 31 ASLYVGDLQPDVTEAILYEVFNSVGPVSSIRVCRDSITRKSLGYAYVNYYSVQDAEAALE 90
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+L+ D+ G R+ +S + + R + A ++V NL ++ +
Sbjct: 91 SLNYIDIKGHPTRIMWS-NKDPTLRKSGA--------------GNIFVKNLDRSIDTKAF 135
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ F FG ++S +V D G ++ +GF+ + + ++ ++A +NG V
Sbjct: 136 YDTFSHFGPILSCKVAMDENG-VSKGYGFVHYDTEESAKEAIEKVNGMV 183
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 6/175 (3%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ +YV NL S E EM FG + S V + E G S+G G++ + A+
Sbjct: 221 RAKFTNVYVKNLDESVKDEEFNEMLAKFGPITSALVQTDDE-GKSKGFGFVNFENHEDAQ 279
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL+ ++ G+ + V + R K K+ Y+ + LY+ NL
Sbjct: 280 KAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAKLEKLAKYQGVN-LYIKNLDDD 338
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ E LR F +G + SA+V+ D K T++ FGF+ FSS D A +NG +
Sbjct: 339 IDDEKLRQEFSVYGVITSAKVMCDEK-DTSKGFGFVCFSSPDEATKAVTEMNGRM 392
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +++ + E+G S+G G++ + +A NAI +
Sbjct: 134 VFIKNLDPSIDNKALHDTFSAFGNILSCKIALD-ESGNSKGYGFVHYETEEAADNAIKHV 192
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +A I + F +YV NL +VK E+
Sbjct: 193 NGMLLNDKKVYVGRHVPKKER----QAKIEQFRAKFT-----NVYVKNLDESVKDEEFNE 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
+FG + SA V D +G+ ++ FGF++F + + A+ +LN T + +
Sbjct: 244 MLAKFGPITSALVQTDDEGK-SKGFGFVNFENHEDAQKAVDALNETEHKGKILY 296
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L EMF G V S+ V R+ T S G Y+ +I + A+ +L
Sbjct: 46 LYVGELDPSVTEAMLFEMFNMIGPVASIRVCRDAVTRRSLGYAYVNFHNIVDGERALESL 105
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + +++ NL ++ + L +
Sbjct: 106 NYTLIKGKPCRIMWSQRDPSLRKTGSG---------------NVFIKNLDPSIDNKALHD 150
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S ++ D G ++ +GF+ + ++ D A+ +NG +
Sbjct: 151 TFSAFGNILSCKIALDESG-NSKGYGFVHYETEEAADNAIKHVNGML 196
>gi|340714141|ref|XP_003395590.1| PREDICTED: hypothetical protein LOC100644519 [Bombus terrestris]
Length = 628
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 36/199 (18%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE-------------- 130
D DSS+E+ + R ++V NLP+ +L ++FK FG + ++
Sbjct: 329 DKDSSLEDFKENERT--IFVGNLPKDVTKKQLQKLFKQFGKIDAIRLRGKISKSLNIPKR 386
Query: 131 ---VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
++ + + Y+ S S K A+ +++G+ G +RV S N +
Sbjct: 387 VAAITNDLHPKMKSVYAYIRFESEESTKKAL-SINGTKFEGNYVRVDMSTKSNDK----- 440
Query: 188 ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247
YE+ +++GNL + V + +RNHF R G + S R++ D + + FG
Sbjct: 441 -----------YETKKSVFIGNLHFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFG 489
Query: 248 FISFSSDAERDAALSLNGT 266
+++F S+ AL L+GT
Sbjct: 490 YVNFKSEDAVALALELDGT 508
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 51 HPAGFRSVLAVV---DEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
HP +SV A + EE+ ING GN V D S + +++ NL
Sbjct: 395 HPK-MKSVYAYIRFESEESTKKALSINGT-KFEGNYVRVDMSTKSNDKYETKKSVFIGNL 452
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D + FK G + SV + R+ +TG+ +G GY+ S ++ A+ LDG+ +
Sbjct: 453 HFNVDDDSVRNHFKRCGEIQSVRIIRDNQTGVGKGFGYVNFKSEDAVALAL-ELDGTTIL 511
Query: 168 GREMRVRFSIDMNSRTR 184
RE+RV+ +ID + RT+
Sbjct: 512 NREVRVKPNIDQDKRTK 528
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 8/180 (4%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E R++A +Y+ N D L E+F +G +LSV+V N G SRG G+++ S
Sbjct: 181 ELRNKASEFTNVYIKNFGDDMDDERLREVFSTYGRILSVKVMTNS-CGKSRGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP-HKLYVGN 209
+A+ A+ ++G +V G+ + V + R + + KK + KLY+ N
Sbjct: 240 HEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKERIRGCQGAKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTV 267
L + E LR F FG++ +V+ + +GQ ++ FG I FSS DA R A +NG +
Sbjct: 300 LDENIDDEKLRKEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSSEDAAR-AMTVMNGRI 356
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 24/175 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPF---GTVLSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L D++E L +FK F G VLS+ + R+ T S G Y+ +
Sbjct: 5 AKYRMASLYVGDLHS--DVTEDL-LFKKFSRVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ V G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDVVKGKAIRLMWS------QRDAYLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++ + L F FG ++S++V+ D +G ++ + F+ F S + D A+ +NG
Sbjct: 107 KSIDNKSLYECFSAFGKILSSKVMSDDRG--SKGYAFVHFQSQSAADRAIEEMNG 159
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L E F FG VLS +V+ + G S+G G++ + +A++AI
Sbjct: 111 ANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVD-NNGQSKGYGFVQFENEEAAQSAIN 169
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +E+ V + R EA SP F +YV NLS EDL
Sbjct: 170 RLNGMLINDKEVFVGRFVRHQERI---EATGSPK---FT-----NVYVKNLSETTSDEDL 218
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
+ F +G++ SA V+ D+ G+ ++ FGF++F S D+ A LNGT
Sbjct: 219 KKFFSNYGSITSAIVMKDQSGK-SKGFGFVNFQSPDSAAAAVEKLNGT 265
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 34/192 (17%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L + F +G++ S V ++ ++G S+G G++ S +SA A+ L
Sbjct: 204 VYVKNLSETTSDEDLKKFFSNYGSITSAIVMKD-QSGKSKGFGFVNFQSPDSAAAAVEKL 262
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G+ + E++ RF + NSR +A LY
Sbjct: 263 NGTTFNDKVWYVGRAQRKGEREAELKARFEQERNSRYEKLKAA--------------NLY 308
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E A+ +LNG
Sbjct: 309 LKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEE--ASRALNG- 364
Query: 267 VESHTVAFQPLF 278
+ + +PL+
Sbjct: 365 MNGKMIGKKPLY 376
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL D +L E+F FG++ S +V +
Sbjct: 281 GEREAELKARFEQERNSRYEKLKAANLYLKNLDDKIDDEKLKELFSEFGSITSCKVMLD- 339
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
+ G+S+G G++ + A A+ ++G +G + + V
Sbjct: 340 QQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYV 377
>gi|261327112|emb|CBH10088.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 426
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 90 VEEPRSRARPCE------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V+ P S+ P E L V NL D + L ++F P+G +LS V RN TG S G
Sbjct: 71 VKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGT 130
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
++ + A+ A++ G V GR + V+++ + T EA KKI
Sbjct: 131 AFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------ 180
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDA 255
KL++ N+ V PED++ F RFGTV S + D T R F++F+
Sbjct: 181 KLFIRNIPLDVGPEDVQRLFERFGTVESVSLHKDTAAATPTTDNSRPQRRIAFVTFTESG 240
Query: 256 ERDAA 260
D A
Sbjct: 241 VADRA 245
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D ++L EMF +G + S V + E G +G G++ +A A+ L
Sbjct: 245 VFVKNFGEHLDEAKLKEMFSKYGEINSAVVMTDAE-GKPKGFGFVAYADPEAASKAVDDL 303
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAE------ALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ S + G E+++ R+AE AL +++ Y+ + LYV N+ +
Sbjct: 304 NESILEGTELKLSVCRAQKKSERSAELKRKYEALKQ--ERVQRYQGVN-LYVKNIEEELT 360
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQ 275
E LR HF +FGT+ SA+V+ D G+ ++ FGF+ F E AA++ + S + +
Sbjct: 361 DEGLRAHFAQFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVT---EMNSKMIGAK 416
Query: 276 PLF 278
PL+
Sbjct: 417 PLY 419
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L S L E F G VLS+ V R+ + +S G Y+ A+ A+ +
Sbjct: 64 LYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 123
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR MR+ +S R+ A + IF+ NL + + + +
Sbjct: 124 NFEIIHGRPMRIMWS------QRDPAARRAGNGNIFIK---------NLDRVIDNKSIYD 168
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ F ++A A+ +NG + S F
Sbjct: 169 TFSLFGNILSCKVATDDDG-NSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVF 221
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N S D +L EMF G + S V E+G S+G G++ + +A+ A+ L
Sbjct: 194 VFVKNFGDSLDEEKLKEMFGKHGEITSCVVM--AESGKSKGFGFVAFEAPEAAEAAVNEL 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ GR++ V + RT ++ K +I Y+ + LY+ NL + E L
Sbjct: 252 NGLEIEGRKLVVCRAQKKAERTMELKSRFEAQKMERINRYQGVN-LYIKNLEDGLDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
R+ F +GT+ SA+V+ D KG ++ FGF+ FSS D A +NG + + +PL+
Sbjct: 311 RSEFSTYGTITSAKVMKDEKG-ISKGFGFVCFSSPDEATKAVTEMNGRI----LVTKPLY 365
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ AI +
Sbjct: 13 LYVGDLNPDVTEAMLFEKFSQTGPVLSIRVCRDLVTRRSLGYAYVNFQQPADAERAIDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR R+ +S + R+ +++ NL + + L +
Sbjct: 73 NYDPIKGRPCRIMWSQRDPTLRRSGVG---------------NIFIKNLDKNIDNKGLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
F FG ++S ++ D K +R +GF+ + + +A +A +NG + + F
Sbjct: 118 AFSAFGNILSCKIAVDSKN-VSRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVF 170
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LY+ NL D L F +GT+ S +V ++ E GIS+G G++ S + A
Sbjct: 289 NRYQGVNLYIKNLEDGLDDERLRSEFSTYGTITSAKVMKD-EKGISKGFGFVCFSSPDEA 347
Query: 155 KNAIIALDG 163
A+ ++G
Sbjct: 348 TKAVTEMNG 356
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG +LSV+V + E G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + R + D ++ ++ ++ K I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIR-YQGIN-LYVKNLDDGIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L+ F FGT+ S +V+ + G ++ FGF+ FSS E A+S +NG + VA +PL
Sbjct: 310 LQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEMNGRI----VATKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVSD-ENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF + EA + K F +Y+ N + E L
Sbjct: 159 NGMLLNDRKVFVGRFK-----SQKEREAELGTGTKEFT-----NVYIKNFGDRMDDETLN 208
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FGRFG ++S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 209 GLFGRFGQILSVKVMTDEGGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVE----------EPRSRARPCELYVCNL 107
E+A DE+NGK+ VG + DD E + R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQVTQDKSIRYQGINLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLQKEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ +++ NL+ + + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------------NVFIKNLNKTIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ GF+ F ++ + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVSDENG--SKGHGFVHFETEEAAERAIEKMNGML 162
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 10/186 (5%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ N+ E +F+ G V S + R+ E G SRG G++ + A+
Sbjct: 223 KAQFTNLYIKNIDPEVTDEEFEALFREQGNVTSSVIQRD-EEGRSRGFGFVNYETHEEAQ 281
Query: 156 NAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ L+ D GR++ R + + R A + +K+ Y+ + LYV NL
Sbjct: 282 KAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQ-ARLEKLSKYQGLN-LYVKNLDD 339
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTV 272
V E LR F FGT+ SA+V+ D KG ++ FGF+ +SS E A++ + + +
Sbjct: 340 DVDDEKLRAEFEPFGTITSAKVMRDDKG-VSKGFGFVCYSSPEEASKAVA---EMNNKMI 395
Query: 273 AFQPLF 278
+PL+
Sbjct: 396 GSKPLY 401
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI +
Sbjct: 136 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKNV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I K F LY+ N+ V E+
Sbjct: 195 NGMLLNDKKVYVGHHISRKER----QSKIDEMKAQFT-----NLYIKNIDPEVTDEEFEA 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F G V S+ + D +G+ +R FGF+++ + E A+
Sbjct: 246 LFREQGNVTSSVIQRDEEGR-SRGFGFVNYETHEEAQKAV 284
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LYV NL D +L F+PFGT+ S +V R+ + G+S+G G++ S
Sbjct: 322 EKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAKVMRD-DKGVSKGFGFVCYSSP 380
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
A A+ ++ +G + + V + R + E+ I+ +I
Sbjct: 381 EEASKAVAEMNNKMIGSKPLYVSHAQRREVRRQQLESQIAQRNQIM 426
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPTVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 108 NYSLIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG V+S +V D G ++ +GF+ + +++A +A ++NG +
Sbjct: 153 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKNVNGML 198
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + G S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGDDMDDDRLREIFSRFGKTLSVKVMMD-NNGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR + R + ++ S R E + +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRLLYVGRAQKRLERQSELKRKFEQMKQ--ERVNRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +P
Sbjct: 309 RLRKEFSPYGTITSAKVMTE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S R+ S +F + NL ++ + L
Sbjct: 71 TMNFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SRGYGFVHFETHEAATRAIETMNGML 162
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVNRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G V + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALAQRKEER 374
>gi|328875992|gb|EGG24356.1| RNA recognition motif-containing protein RRM [Dictyostelium
fasciculatum]
Length = 770
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 101/201 (50%), Gaps = 29/201 (14%)
Query: 70 EDEINGKDNVGGNEVDD-DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128
ED N + G++ DD +SS+E+ ++ ++V LP F SEL +F FG V+S
Sbjct: 62 EDSPNSSSDHYGDQGDDYESSIEKDQTN-----VFVKYLPNEFGDSELHNLFTQFGKVMS 116
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRN 185
+V +P+ G S G G++ S +K AI +DG + +++ R S + NS+
Sbjct: 117 AKVMVDPK-GNSYGYGFVRFSSPIESKLAIETMDGKQLMHKKLLCRLSYLYSNHNSKY-- 173
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
P +FV P L G LR+ F FG +V +V+ D+KG +++
Sbjct: 174 ------PSNNLFVKPLPATLTDG---------QLRDLFQGFGEIVECKVMVDKKG-NSKL 217
Query: 246 FGFISFSSDAERDAAL-SLNG 265
GF+ F ++A+ A+ ++NG
Sbjct: 218 AGFVRFDNEADATKAIQAMNG 238
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V +LP D L ++F +G + SV V + ETG ++G G++ + + A ++
Sbjct: 628 TNLFVFHLPSFVDDVYLYKLFSQYGPLQSVRVIMDKETGENKGYGFVKFQNRDDAVTSLN 687
Query: 160 ALDGSDVGGREMRVRF 175
++G VG + ++V+F
Sbjct: 688 QMNGMQVGQKYLKVKF 703
>gi|357114300|ref|XP_003558938.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like
[Brachypodium distachyon]
Length = 255
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ +P + +E+ E+F+ FG + S+++S P++G G ++T S A + +
Sbjct: 77 KVVASGMPYTTTEAEIRELFERFGPIRSLQLSHFPDSGNFSGLAFVTFESDEVAMKS-LE 135
Query: 161 LDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHK------LYVGNLSWA 213
LDG +G R MRV R I +S+ PKK P K YVGNLSW
Sbjct: 136 LDGHKLGYRFMRVERCRITASSKR---------PKKSEFQTDPEKPDGCLSAYVGNLSWN 186
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
V +DLR+ F + + S R D++ +R FG I F D + A+ +N
Sbjct: 187 VTEKDLRDFF-KSSRIASVRFAIDKRTGDSRGFGHIDFEDDESLEKAVGMN 236
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RSRA +Y+ N D L +F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSRASEFTNVYIKNFGDDMDDERLQGVFSRYGKTLSVKVMTDS-SGKSKGFGFVSFES 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + KK + KLYV N
Sbjct: 240 HEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQMKKERIRRCQGVKLYVKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L V E LR F FG++ +V+ + +R FG I FSS E AL+ +NG V
Sbjct: 300 LDDTVDDEQLRKEFSSFGSITRVKVMKEEG--YSRGFGLICFSSPEEAAKALTEMNGRV 356
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T G Y+ + A
Sbjct: 5 AKYRLASLYVGDLHAEATEDLLFRKFSAAGPVLSIRICRDLATRQPLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + GR +R+ +S R+A S +F V NL +V
Sbjct: 65 QRALDTMNFDVIKGRPIRLMWS------QRDACLRRSGIGNVF---------VKNLDRSV 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F S + + A+ +NG V
Sbjct: 110 DNKTLYEHFSGFGKILSSKVMSDDQG--SKGYAFVHFQSQSAANCAIEQMNGKV 161
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V +P +G SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKEIFDKYGKTLSVKVMTDP-SGKSRGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G+++ G+ + V R M + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 309 KLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EEGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|326432018|gb|EGD77588.1| hypothetical protein PTSG_08685 [Salpingoeca sp. ATCC 50818]
Length = 517
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 23/185 (12%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DSS + P R L + LP S S+L E+FKPFGT+ ++++ + T S G G++
Sbjct: 74 DSSADTPEPR---NNLIINYLPPSVTESDLRELFKPFGTIKAIKIMTDRYTHKSLGYGFV 130
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A AI A++G + ++V + +S A LY
Sbjct: 131 EFETAEEAARAIQAMNGRQYMNKRLKVSIARPSSSSITGA-----------------NLY 173
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + + LR F FG ++SAR+L+D G + F+ F A + A++ LN
Sbjct: 174 IKNLPRTITEDQLRAIFNPFGEIISARLLYD--GDVPKGIAFVRFDKRACAERAVAELNN 231
Query: 266 TVESH 270
TV ++
Sbjct: 232 TVPAN 236
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP D +F FG V+S +SR +R G++TM A AI L
Sbjct: 317 LFVFNLPPFMDEDGFARLFANFGGVVSASISRK-SLSQARRYGFVTMRDFGEAATAIQNL 375
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNA 186
+ DV G R S+ S RN+
Sbjct: 376 NDYDVFG----YRLSVSFKSNRRNS 396
>gi|72387121|ref|XP_843985.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175981|gb|AAX70104.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|70800517|gb|AAZ10426.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 386
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 90 VEEPRSRARPCE------LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
V+ P S+ P E L V NL D + L ++F P+G +LS V RN TG S G
Sbjct: 31 VKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDSLGT 90
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH 203
++ + A+ A++ G V GR + V+++ + T EA KKI
Sbjct: 91 AFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGEAR----KKIV------ 140
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT--------TRVFGFISFSSDA 255
KL++ N+ V PED++ F RFGTV S + D T R F++F+
Sbjct: 141 KLFIRNIPLDVGPEDVQRLFERFGTVESVSLHKDTAAATPTTDNNRPQRRIAFVTFTESG 200
Query: 256 ERDAA 260
D A
Sbjct: 201 VADRA 205
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGEMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 219
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L + F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|390594976|gb|EIN04384.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 611
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 15/172 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D +L F G V+S V+ + TG SRG G++ +S + AI +
Sbjct: 345 IFVGRLSWNVDDDQLASEFAECGEVVSARVNIDRNTGKSRGFGHVEFADASSVQKAIDTM 404
Query: 162 DGSDVGGREMRVRFSIDMN---SRTRNAEAL---ISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR + V + +N R A+A S P + L+VGNLSW
Sbjct: 405 NGKEIDGRPVNVDRAPGLNKNQQRENRAKAFGDSTSAPSSV--------LFVGNLSWDAT 456
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
+ + FG G V S R+ DR+ + FG++ F DA + A +L+GT
Sbjct: 457 EDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFEALSGT 508
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL S+D +E + E F G V SV + + E+G +G GY+ +++AK A
Sbjct: 446 LFVGNL--SWDATEDAVWEAFGEHGEVKSVRLPTDRESGRPKGFGYVEFVDVDAAKAAFE 503
Query: 160 ALDGSDVGGREMRVRFS 176
AL G+++GGR +R+ +S
Sbjct: 504 ALSGTEIGGRSIRLDYS 520
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 167 GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRF 226
GG+ + + +T+ A+ +P ++ E ++VG LSW V + L + F
Sbjct: 310 GGKRKAEDDAPSASKKTKLADGSAAPAEQ---EEESKTIFVGRLSWNVDDDQLASEFAEC 366
Query: 227 GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
G VVSARV DR +R FG + F+ + A+ ++NG
Sbjct: 367 GEVVSARVNIDRNTGKSRGFGHVEFADASSVQKAIDTMNG 406
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 219
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 238 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 296
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 297 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 356
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 357 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 413
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 62 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 121
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 122 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 166
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 167 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 218
>gi|400602999|gb|EJP70597.1| cutinase negative acting protein [Beauveria bassiana ARSEF 2860]
Length = 448
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 4/178 (2%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + ++ +S P L+ +L D + L E FK FG ++S V + TG SRG GY+
Sbjct: 190 DEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKNTGRSRGFGYV 249
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK---IFVYESPH 203
G SA A A+ G ++ GR + + ++ + + + K+ ES
Sbjct: 250 DFGDSESATKAYEAMQGQEIDGRALNLDYANAKPTEGKPQDRAADRAKRHGDTLSAES-D 308
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
L+VGNL + + + +R F V S R+ D + FG+++F+S + +AL
Sbjct: 309 TLFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGFGYVTFNSIEDAKSAL 366
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 181 SRTRNAEALIS-PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
S+ R AE I PKK ++P L+ G+LSW V L F FG +VSARV+ D+
Sbjct: 180 SKKRKAEDEIDEAPKKAKSDDAPMTLFAGSLSWGVDDNALYEAFKSFGNIVSARVVTDKN 239
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
+R FG++ F G ES T A++ +
Sbjct: 240 TGRSRGFGYVDF-------------GDSESATKAYEAM 264
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP + + + F V SV + +P++G +G GY+T SI AK+A+ A
Sbjct: 310 LFVGNLPFDTEQDTVRQFFSEVAEVASVRLPTDPDSGNLKGFGYVTFNSIEDAKSALDAK 369
Query: 162 DGSDVG-GREMRV 173
+G+ +G GR R
Sbjct: 370 NGASIGNGRNSRA 382
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 325
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 326 KLRREFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 378
Query: 276 PLF 278
PL+
Sbjct: 379 PLY 381
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 134
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 135 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 179
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 249 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 308
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L F PFG++ S +V E G S+G G++ S A A
Sbjct: 309 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 366
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRKEER 391
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+ AI L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSDEAAQKAIEKL 175
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E ++ K F ++V NLS + E+LR
Sbjct: 176 NGMLLNDKQVYV------GPFVRKQERDMAVDKTRFT-----NVFVKNLSESTLEEELRK 224
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FGT+ S V+ D G+ +R FGF++F + DA R A +LNG
Sbjct: 225 IFGEFGTITSVAVMKDEDGK-SRCFGFVNFENAEDAAR-AVEALNG 268
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL S EL ++F FGT+ SV V ++ E G SR G++ + A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGTITSVAVMKD-EDGKSRCFGFVNFENAEDAA 260
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ AL+G + ++ V + + R + + V +S LY+ NL ++
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAQEAVDKSQGLNLYLKNLDDSI 320
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVA 273
+ L+ F +GT+ S +V+ D G ++ GF++FS+ E ALS +NG + V
Sbjct: 321 SDDKLKELFSPYGTITSCKVMRDPSG-VSKGSGFVAFSTPEEASRALSEMNGKM----VV 375
Query: 274 FQPLF 278
+PL+
Sbjct: 376 SKPLY 380
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E +++ LY+ NL S +L E+F P+GT+ S +V R+P +G+S+G G++
Sbjct: 296 EQSAQEAVDKSQGLNLYLKNLDDSISDDKLKELFSPYGTITSCKVMRDP-SGVSKGSGFV 354
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++G V + + V + R +A S + I + S
Sbjct: 355 AFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 96/187 (51%), Gaps = 25/187 (13%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + D L E+F +G LSV+V + + G S+G G+++ S A+ A+ +
Sbjct: 227 IYIKNFGENMDDQRLTEIFAKYGPTLSVKVMTD-DCGRSKGFGFVSFQSHEDAQAAVDDM 285
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPH------KLYVGNLSWA 213
+G + G+++ V + R R E K+ F + ++ H LY+ NL
Sbjct: 286 NGKQLNGKQIYVGRA--QKKRERQTEL-----KRHFEQIKQNQHIRYQGVNLYIKNLDDT 338
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTVESHT 271
+ E LR F FGT+ SA+V+ + ++ FGF+ FSS DA + A+ +NG +
Sbjct: 339 INDEHLRKEFSPFGTITSAKVMMENG--RSKGFGFVCFSSSKDAAK-ASREMNGKL---- 391
Query: 272 VAFQPLF 278
VA +PL+
Sbjct: 392 VASKPLY 398
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 20/175 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S L E F P G +LS+ V R+ T S G Y+ A+ + +
Sbjct: 47 LYVGDLHHDVTESMLYEKFSPAGPILSIRVCRDSVTQHSLGYAYVNFQHRAHAEWVLATM 106
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + G +R+ +S D R R ++V NL ++ + L
Sbjct: 107 NLDVIKGNPIRIMWSQRDPGQRKRGVG----------------NVFVKNLEKSIDNKALY 150
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
+ F FG ++S +V+ D G ++ +GF+ F + A+ +NG + ++ F
Sbjct: 151 DTFSTFGRILSCKVISDENG--SKGYGFVHFETQESAGKAIEKMNGMLLNNLKVF 203
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 20/144 (13%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS------- 95
RS GF S + D +A V D++NGK VG + + E R
Sbjct: 263 RSKGFGFVSFQSHEDAQAAV--DDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQIKQN 320
Query: 96 ---RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
R + LY+ NL + + L + F PFGT+ S +V E G S+G G++ S
Sbjct: 321 QHIRYQGVNLYIKNLDDTINDEHLRKEFSPFGTITSAKVMM--ENGRSKGFGFVCFSSSK 378
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
A A ++G V + + V +
Sbjct: 379 DAAKASREMNGKLVASKPLYVSLA 402
>gi|6456838|emb|CAA04179.2| Sex-lethal orthologous protein [Megaselia scalaris]
Length = 307
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 98/234 (41%), Gaps = 40/234 (17%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS 88
F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 16 FSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN------ 65
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
L V LP+ EL +F+ G + + + R+ +TG S G G++
Sbjct: 66 -------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDF 112
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
GS A AI L+G V + ++V F+ + R+ LYV
Sbjct: 113 GSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN-----------------LYVT 155
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 156 NLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 209
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 122 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 181 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 237
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 238 KLRREFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 290
Query: 276 PLF 278
PL+
Sbjct: 291 PLY 293
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 15/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 30 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 87
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V +L+
Sbjct: 88 NGMLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDGNLK 137
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F +FG +S +V+ D G+ ++ FGF+S+ + + A+ +NG S F
Sbjct: 138 ELFSQFGKTLSVKVMRDSSGK-SKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIF 191
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 161 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 220
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L F PFG++ S +V E G S+G G++ S A A
Sbjct: 221 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 278
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 279 VTEMNGRIVGSKPLYVALAQRKEER 303
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E + +YV NL + + F FG V +V + ++ G SRG G++ S
Sbjct: 198 KEASEETKFTNVYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFES 256
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLY 206
+ AK A+ AL+G+ +G +++ V + R + L+ K++ E LY
Sbjct: 257 PDEAKKAVEALNGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLY 312
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
V NL +V + L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNG
Sbjct: 313 VKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNG 371
Query: 266 TV 267
T+
Sbjct: 372 TL 373
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG V + ++ D G+ +R FGF++F S D + A +LNG +
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAM 271
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|24583873|ref|NP_723737.1| arrest, isoform B [Drosophila melanogaster]
gi|442627569|ref|NP_001260403.1| arrest, isoform G [Drosophila melanogaster]
gi|22946318|gb|AAN10810.1| arrest, isoform B [Drosophila melanogaster]
gi|375065944|gb|AFA28453.1| FI19388p1 [Drosophila melanogaster]
gi|440213733|gb|AGB92938.1| arrest, isoform G [Drosophila melanogaster]
Length = 810
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 325 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 372
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G ++
Sbjct: 373 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHPIQ 432
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 433 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 476 LRDQNGQ-SKGCAFVTF---ATKHAAIS 499
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 726 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 785
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 786 AMNGFQVGTKRLKVQLKKPKDSK 808
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 264 NG 265
NG
Sbjct: 788 NG 789
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 97/188 (51%), Gaps = 12/188 (6%)
Query: 95 SRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+RAR +Y+ N D +L ++F +G +S+ V + ++G SRG G+++
Sbjct: 185 ARAREFTNVYIKNFGDDMDEEKLRDVFNKYGNAMSIRVMTD-DSGKSRGFGFVSFERHED 243
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A+ A+ ++G ++ G+ + V + R + K ++ Y+ + LYV NL
Sbjct: 244 AQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVN-LYVKNLD 302
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG +
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMLE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI--- 357
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 358 -VATKPLY 364
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHTDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWS------QRDPSLRKSGVGNIF---------IKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVML--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRV 173
+ + V
Sbjct: 360 TKPLYV 365
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDMIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 219
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRREFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ E ++F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNIYVKNIDLETSQEEFEQLFSKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ ++A A+ L+ SD G+ + V + + R + + + K+ Y+
Sbjct: 263 FINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQYETARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L++ F FGT+ S +V+ D G ++R FGF+ FS+ E A++
Sbjct: 323 N-LFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKDEAG-SSRGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 EKN---QQLVAGKPLY 393
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + + G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-DNGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +E+ V + + R E + K F +YV N+ E+
Sbjct: 187 NGMLMNDQEVYVAWHVSKKDRQSKLEEV----KAKFT-----NIYVKNIDLETSQEEFEQ 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F ++G + SA + D +G+ R FGFI+F
Sbjct: 238 LFSKYGKITSAVLEKDSEGK-LRGFGFINF 266
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L S + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ + AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGRKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA ++NG +
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDDNG-VSRGFGFVHFENESDARDAIEAVNGML 190
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L++ NL S D +L + F PFGT+ SV+V ++ E G SRG G++ +
Sbjct: 314 EKLAKYQGVNLFIKNLDDSIDDEKLKDEFAPFGTITSVKVMKD-EAGSSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQLVAGKPLYV 394
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRREFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVMKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 232 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 291
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L F PFG++ S +V E G S+G G++ S A A
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 349
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 350 VTEMNGRIVGSKPLYVALAQRKEER 374
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 14/152 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D + L E+F FG VLS +V++N E G SRG G++ S SA AI L
Sbjct: 132 IFVKNLNNSVDNASLQELFSKFGDVLSCKVAKN-EDGTSRGYGFVQFASQESADEAIGNL 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+GS R++ V I + R+ N + + LY+ +L + E ++
Sbjct: 191 NGSLFNDRKLHVATFIKKSERSANNDDKFT------------NLYMKHLDDDITEELVKL 238
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +FG +VS +++ R ++ FGF+SF +
Sbjct: 239 KFSQFGPIVSVKIMR-RPDGSSLGFGFVSFQN 269
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L + F GTV SV V R+ T S GY+ S A A+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V + +RV +S R+ +A S IF V NL+ +V L+
Sbjct: 104 NHSLVLDKPIRVMWS------NRDPDARRSGVGNIF---------VKNLNNSVDNASLQE 148
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F +FG V+S +V + G T+R +GF+ F+S D A+ +LNG++
Sbjct: 149 LFSKFGDVLSCKVAKNEDG-TSRGYGFVQFASQESADEAIGNLNGSL 194
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 356
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
>gi|116786211|gb|ABK24023.1| unknown [Picea sitchensis]
Length = 302
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 6/168 (3%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C++YV +P + ++ F+ GTV V+ P++G RG ++ + +A A +
Sbjct: 76 CKVYVGGIPYYSNEDDIRSFFEGCGTVTEVDCMTFPDSGKFRGIALISFKTKAAATRA-L 134
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
ALDG+D+GGR ++++ S + A P K + ++ Y+GNL+W + +DL
Sbjct: 135 ALDGADMGGRFLKIQQCRTHRSSKNDKPAGFVPTK----VDKSNRAYIGNLAWDIAEDDL 190
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
+ FG + + R+ D+ + +G I F+ + AL L+ TV
Sbjct: 191 KVVFGDC-KISAIRLGKDKTTGEFKGYGHIDFADEVSLAMALKLDQTV 237
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL ++ D L + F FG +LS +++ + +G S+G G++ + SAK
Sbjct: 116 RSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATD-ASGQSKGYGFVQFDNEESAK 174
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NA L+G + +++ V R E + K F + +YV NL +
Sbjct: 175 NATDKLNGMLLNDKQVYV------GPFVRKQERESATNKTKF-----NNVYVKNLLESTT 223
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
EDL+N FG +G + SA V+ D G+ ++ FGF++F + DA R +LNG
Sbjct: 224 DEDLKNIFGEYGPITSAVVMQDGDGK-SKCFGFVNFENADDAARSVE-ALNG 273
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F +G + S V ++ + G S+ G++ + + A ++ AL
Sbjct: 213 VYVKNLLESTTDEDLKNIFGEYGPITSAVVMQDGD-GKSKCFGFVNFENADDAARSVEAL 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + R + K V + LYV NL ++ + LR
Sbjct: 272 NGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLR 331
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FGT+ S +V+ D G +R GF++FS+ E AL+ +NG + VA +PL+
Sbjct: 332 ELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASRALADMNGKM----VASKPLY 385
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 301 EQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGTITSCKVMRDP-NGISRGSGFV 359
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 360 AFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFS 404
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 219
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + + F FG V +V + ++ G SRG G++ S + AK A+ AL
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLYVGNLSWAVKPE 217
+G+ +G +++ V + R + L+ K++ E LYV NL +V +
Sbjct: 268 NGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNGT+
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTL 373
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG V + ++ D G+ +R FGF++F S D + A +LNG +
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAM 271
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 210 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSKGFGFVSYEKHEDANKAVEEM 268
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 269 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 325
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 326 KLRREFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 378
Query: 276 PLF 278
PL+
Sbjct: 379 PLY 381
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 30 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 89
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 90 NFDVMKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 134
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 135 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 179
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 18/145 (12%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRA 97
GF V E+A +E+NGK+ G +V+ + + +E SR
Sbjct: 249 GFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQERISRY 308
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ NL + D +L F PFG++ S +V E G S+G G++ S A A
Sbjct: 309 QGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKA 366
Query: 158 IIALDGSDVGGREMRVRFSIDMNSR 182
+ ++G VG + + V + R
Sbjct: 367 VTEMNGRIVGSKPLYVALAQRKEER 391
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G SRG G+++ A A+ +
Sbjct: 94 VYIKNFGEEVDDGNLKELFSQFGKTLSVKVMRD-SSGKSRGFGFVSYEKHEDANKAVDEM 152
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 153 NGKEMSGKAIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 209
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ F S E A++ +NG + V +
Sbjct: 210 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFPSREEATKAVTEMNGRI----VGSK 262
Query: 276 PLF 278
PL+
Sbjct: 263 PLY 265
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G S+G ++ + +A AI +
Sbjct: 2 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 59
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + R++ V RF SR + EA + K F +Y+ N V +L+
Sbjct: 60 NGLLLNDRKVFVGRF----KSR-KEREAELGAKAKEFT-----NVYIKNFGEEVDDGNLK 109
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F +FG +S +V+ D G+ +R FGF+S+ + + A+ +NG S F
Sbjct: 110 ELFSQFGKTLSVKVMRDSSGK-SRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIF 163
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 22/170 (12%)
Query: 29 FTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGG------- 81
F+ ++ + + SS SR GF V E+A DE+NGK+ G
Sbjct: 112 FSQFGKTLSVKVMRDSSGKSR----GFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRA 167
Query: 82 -NEVDDDSSV--------EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
+V+ + + +E SR + LY+ NL + D +L + F PFG++ S +V
Sbjct: 168 QKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 227
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
E G S+G G++ S A A+ ++G VG + + V + R
Sbjct: 228 L--EDGRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEER 275
>gi|330928516|ref|XP_003302299.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
gi|311322459|gb|EFQ89618.1| hypothetical protein PTT_14050 [Pyrenophora teres f. teres 0-1]
Length = 403
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 83 EVDD----DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
EVD+ S VEEP + L+V N+ + D L F+ FG ++ V + ETG
Sbjct: 196 EVDEPIVKKSKVEEPAAEEGIKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETG 255
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMN--SRTRNAEALIS 191
++G GY+ + A A + ++ GR++ V FS D N +R S
Sbjct: 256 RAKGFGYVEFSNAADAAKAQKEMHEYELDGRQLNVDFSTPRAKPDANGGARANKYGDKRS 315
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
PP + L++GN+S+ E ++ F +G++ + DR + FG++ F
Sbjct: 316 PPS--------NTLFLGNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDF 367
Query: 252 SSDAERDAAL-SLNG 265
SS E AAL +LNG
Sbjct: 368 SSQQEATAALEALNG 382
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K E P L+VGN+SW + + LR F FG +V RV
Sbjct: 189 SKKRKAEEVDEPIVKKSKVEEPAAEEGIKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRV 248
Query: 235 LHDRKGQTTRVFGFISFSSDAE 256
+ DR+ + FG++ FS+ A+
Sbjct: 249 ITDRETGRAKGFGYVEFSNAAD 270
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ SF+ S + E+F +G++ V + + +TG +G GY+ S A A+
Sbjct: 321 LFLGNV--SFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALE 378
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+GGR +R+ ++
Sbjct: 379 ALNGQDIGGRAIRIDYA 395
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 356
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 239 ELRSKASEFTNIYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 297
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 298 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERICGCQGVKLYIKN 357
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 358 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 414
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 63 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 122
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 123 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVFIK---------NLDKSI 167
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 168 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 219
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNG 277
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S + + +P
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMS---QLSGKMIESKP 387
Query: 277 LF 278
L+
Sbjct: 388 LY 389
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 142
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG +
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGML 188
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408
>gi|242082447|ref|XP_002445992.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
gi|241942342|gb|EES15487.1| hypothetical protein SORBIDRAFT_07g029220 [Sorghum bicolor]
Length = 266
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 91/180 (50%), Gaps = 21/180 (11%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+R L N+P E+ +F+ G+V+ VE+S + +RG ++TMGS
Sbjct: 70 PRTR-----LVAQNIPWDSTADEMRALFQTHGSVVGVELSMYSASK-NRGLAFVTMGSEE 123
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY---VGN 209
A A+ L+ + + R+++V F +R R + PK+ V +P + Y VGN
Sbjct: 124 DALAALTHLNSTILNDRKIKVDF-----ARPRKKQ-----PKQPVVVSNPMEKYIVFVGN 173
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L+W V+ LR F V+SA V+ H + + + F+SFSS +AA+S NG +
Sbjct: 174 LTWRVRNRHLRELFASAPGVISAEVIFHTTTPRRSAGYAFVSFSSKETAEAAISAFNGKI 233
>gi|406602740|emb|CCH45698.1| Nuclear localization sequence-binding protein [Wickerhamomyces
ciferrii]
Length = 467
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 9/172 (5%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L S D L F+P G V+S V TG SRG GY+ S ++A+ A+
Sbjct: 234 PATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKSRGYGYVDFDSKSAAEKAL 293
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP----HKLYVGNLSWAV 214
G ++ GR + ++DM++ +A S + ++P L++GNLS+
Sbjct: 294 KEYQGREIDGRPI----NLDMSTGKPHASNNRSNDRASKFGDTPSAPSDTLFLGNLSFNA 349
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
++L F +G++VS R+ + + FG++ + S E AAL +LNG
Sbjct: 350 NRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEALNG 401
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
R E +P KK V E P L+VG LSW++ E L+ F G V+SARV+ +R +
Sbjct: 216 RKVEEEAAPAKKQKVDEEPATLFVGRLSWSIDDEWLKREFEPLGGVISARVIFERATGKS 275
Query: 244 RVFGFISFSSDAERDAAL 261
R +G++ F S + + AL
Sbjct: 276 RGYGYVDFDSKSAAEKAL 293
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L E+F +G+++SV + +P+T +G GY+ GS++ AK A+ AL
Sbjct: 340 LFLGNLSFNANRDNLSEVFSEYGSIVSVRIPTHPDTEQPKGFGYVQYGSVDEAKAALEAL 399
Query: 162 DGSDVGGREMRVRFSIDMNSRTR 184
+G + GR +R+ FS ++ R
Sbjct: 400 NGEYIEGRPVRLDFSAPRDNSNR 422
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V+ + G SRG G++ + SAK+AI L
Sbjct: 130 IFIKNLDKSIDNKALHDTFSTFGNILSCKVATD-SLGQSRGYGFVQFDNEESAKSAIDKL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R A+ K F + +YV NLS +DL+
Sbjct: 189 NGMLLNDKQVFVGPFLRKQERESTAD------KTRF-----NNVYVKNLSETTTEDDLKK 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS---LNG 265
FG FG + S V+ D G+ ++ FGF++F D DAA S LNG
Sbjct: 238 IFGEFGIITSTAVMRDADGK-SKCFGFVNF--DDPDDAARSVEALNG 281
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E + R +YV NL + +L ++F FG + S V R+ + G S+ G++
Sbjct: 210 ESTADKTRFNNVYVKNLSETTTEDDLKKIFGEFGIITSTAVMRDAD-GKSKCFGFVNFDD 268
Query: 151 INSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
+ A ++ AL+G +E V ++ +M + + ++L K +E + L
Sbjct: 269 PDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSLKETADK---FEGLN-L 324
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LN 264
YV NL ++ + L+ F FGT+ S +V+ D G +R GF++FS+ E AL+ +N
Sbjct: 325 YVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNG-ISRGSGFVAFSTAEEASKALTEMN 383
Query: 265 GTVESHTVAFQPLF 278
G + V +PL+
Sbjct: 384 GKM----VVSKPLY 393
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + LYV NL S +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 309 EQSLKETADKFEGLNLYVKNLDDSISDDKLKELFSEFGTITSCKVMRDP-NGISRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G V + + V + R +A S
Sbjct: 368 AFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFS 412
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L +V L + F + G VVS RV D + + +G++++++ E AL
Sbjct: 42 LYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRALD-- 99
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL + + ++Y P+ R G G
Sbjct: 100 ------ELNFTPL--NGKPIRIMYSYRDPTIRKSGAG 128
>gi|167516158|ref|XP_001742420.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779044|gb|EDQ92658.1| predicted protein [Monosiga brevicollis MX1]
Length = 204
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ L LL+ F+ FG V+ V +P TG +RG G++T ++++A
Sbjct: 1 KLFIGGLSPETTHDRLLDYFQVFGDVVDCVVMTDPATGRTRGFGFVTYRD-GRCCDSVLA 59
Query: 161 LDGSDVGGREMRVRFSI---DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
V GRE+ + ++ +M S R++ A + P+ K++VG L E
Sbjct: 60 HRPHVVDGREVDPKRAVPRQEMESSPRSSSATRAKPRSASFTHHVRKVFVGGLPPTATNE 119
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L +F FG V A ++HD++ +T R FGF++F D +S++
Sbjct: 120 MLHRYFSHFGGVEEAVIIHDKQTRTPRGFGFVTFEDPIIADKVVSVH 166
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L + F FG VLS +V+ + G S+G G++ + SA+NAI
Sbjct: 93 ANVFIKNLDISIDNKTLHDTFAAFGFVLSSKVAVD-SIGQSKGYGFVQFDNEESAQNAIK 151
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V ++ R + + PK V YV N S EDL
Sbjct: 152 ELNGMLINDKKVYVGLFVNRQERAQ----VDGSPKFTNV-------YVKNFSETYTDEDL 200
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
F +GT+ SA V+ D G+ +R FGF++F S D+ A LNGT
Sbjct: 201 EQLFSTYGTITSAVVMKDTDGK-SRCFGFVNFESPDSAVAAVERLNGT 247
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 90/180 (50%), Gaps = 18/180 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L R+ D ++L ++F G + S+ V R+ ET S G Y+ + A NA+
Sbjct: 6 ASLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRD-ETNRSLGYAYVNFVNPQDAANAME 64
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+ + + G+ +RV FS S ++ A +++ NL ++ + L
Sbjct: 65 HLNFTPLNGKSIRVMFSNRDPSIRKSGYA---------------NVFIKNLDISIDNKTL 109
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAFQPLF 278
+ F FG V+S++V D GQ ++ +GF+ F + ++ ++A LNG + + + LF
Sbjct: 110 HDTFAAFGFVLSSKVAVDSIGQ-SKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLF 168
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 15/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N ++ +L ++F +GT+ S V ++ + G SR G++ S +SA A+ L
Sbjct: 186 VYVKNFSETYTDEDLEQLFSTYGTITSAVVMKDTD-GKSRCFGFVNFESPDSAVAAVERL 244
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPP---KKIFVYESPH--KLYVGNLSWAVKP 216
+G+ V ++ + R EA + ++I YE H LYV NL + +
Sbjct: 245 NGTTVNDDKV---LYVGRAQRKAEREAELKARFELERIRKYEKYHGTNLYVKNLDYNIND 301
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQ 275
+ L+ F FGT+ S +V+ + G+ ++ +GF++FS+ + AL +NG + + +
Sbjct: 302 DKLKELFSEFGTITSCKVMLEPNGR-SKGYGFVAFSAPRNANRALHEMNGKM----IGRR 356
Query: 276 PLF 278
PL+
Sbjct: 357 PLY 359
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL D L E F FG VLS +V+ + G S+G G++ + A+
Sbjct: 117 RSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVD-NNGQSKGYGFIQFENEEDAQ 175
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+AI L+G V RE+ V + R EA SP F +YV NLS
Sbjct: 176 SAINRLNGMLVNDREVYVGPFV---RRLERIEANGSPK---FT-----NVYVKNLSETTS 224
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
EDL+ F +G + SA V+ D+ G+ +R FGF++F S D+ A LNG S V +
Sbjct: 225 DEDLKKIFSSYGAITSAIVMKDQNGK-SRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWY 283
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F +G + S V ++ + G SRG G++ S +SA A+ L
Sbjct: 214 VYVKNLSETTSDEDLKKIFSSYGAITSAIVMKD-QNGKSRGFGFVNFQSPDSAAAAVEKL 272
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G + E++ +F + NSR +A LY
Sbjct: 273 NGMTFSDKVWYVGRAQRKGEREAELKAKFEQERNSRYEKMKAA--------------NLY 318
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + E L+ F FG++ S +V+ D++G ++ GF++FS+ E ALS +NG
Sbjct: 319 LKNLGDTIDEERLKELFSEFGSITSCKVMLDQQG-LSKGSGFVAFSTPEEASRALSEMNG 377
Query: 266 TVESHTVAFQPLF 278
+ + +PL+
Sbjct: 378 KM----IGKKPLY 386
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 80 GGNEVDDDSSVEEPRS----RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
G E + + E+ R+ + + LY+ NL + D L E+F FG++ S +V +
Sbjct: 291 GEREAELKAKFEQERNSRYEKMKAANLYLKNLGDTIDEERLKELFSEFGSITSCKVMLD- 349
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA------- 188
+ G+S+G G++ + A A+ ++G +G + + V + R +A
Sbjct: 350 QQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQIQA 409
Query: 189 --LISPPKKIFVYE------SPHKLYVGNLSWAVKP 216
L + P + Y +PH+LY G + + P
Sbjct: 410 PGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMP 445
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L VK L + F + VVS RV D+ G T+ + +++FS+ +DAA ++
Sbjct: 35 LYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNP--QDAAKAM- 91
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFG 299
+ F PL + + F++ P+ R G
Sbjct: 92 -----EVLNFTPL--NGKPIRIMFSHRDPTTRRSG 119
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 104 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 162
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 163 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 211
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG
Sbjct: 212 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNG 261
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 201 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 259
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 260 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 315
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S + + +P
Sbjct: 316 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMS---QLSGKMIESKP 371
Query: 277 LF 278
L+
Sbjct: 372 LY 373
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 22 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 81
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 82 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG +
Sbjct: 127 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGML 172
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 289 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 347
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 348 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 392
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + +L EMF+ +G LSV+V + +G SRG G+++ A A+ +
Sbjct: 193 VYIKNFGDEMEDEQLKEMFEKYGKTLSVKVMTD-SSGKSRGFGFVSFEKHEDANKAVEEI 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+++ G+ + R + ++ + + L+ ++I Y+ + LY+ NL + E
Sbjct: 252 NGTELNGKTVFVGRAQKKMERQAELKRKFELLKQ-ERISRYQGVN-LYIKNLDDTIDDEK 309
Query: 219 LRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +P
Sbjct: 310 LRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVVKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALA 368
>gi|213401557|ref|XP_002171551.1| gar2 [Schizosaccharomyces japonicus yFS275]
gi|211999598|gb|EEB05258.1| gar2 [Schizosaccharomyces japonicus yFS275]
Length = 449
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 83 EVDDDSSVEEPRSRARP-----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
+ DD+S ++P+ A+ C ++V L + D L + F+ +GTV++ V + ++
Sbjct: 184 KADDESEEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQS 243
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
G S+G GY+ S +AK A+ ++ GR + + S ++ N A
Sbjct: 244 GRSKGFGYVDFDSPEAAKAAVAVNGQKEIDGRMVNLDISTPRPAQNNNGFAQ-QRASNFG 302
Query: 198 VYESP--HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
+SP +++GNLS+ +D+RN F G + S R+ D + FG+++F S
Sbjct: 303 DKQSPPSDTVFIGNLSFNATEDDVRNAFSSCGEIQSVRLPTDMNSGRPKGFGYVTFDSID 362
Query: 256 ERDAALSLNGTVESHTVAFQP 276
+ +NG H +A +P
Sbjct: 363 AAKQCVEMNG----HFIAGRP 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 182 RTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
R + E+ P+K ES ++VG LSW V E L F +GTVV+ARV+ D +
Sbjct: 183 RKADDESEEQKPQKAAKSESGESCTVFVGRLSWNVDDEWLGKEFEEYGTVVNARVIMDGQ 242
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGTVE 268
++ FG++ F S AA+++NG E
Sbjct: 243 SGRSKGFGYVDFDSPEAAKAAVAVNGQKE 271
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 9/154 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L EMF +G LSV+V + ++G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEMFGKYGPALSVKVMTD-DSGKSKGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G D+ G+ + V + + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKAIYVGRAKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDER 308
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
LR F FGT+ SA+V+ + G ++ FGF+ FS
Sbjct: 309 LRKEFSPFGTITSAKVMME--GGRSKGFGFVCFS 340
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I ++ NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 116 YDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
>gi|294933049|ref|XP_002780572.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
gi|239890506|gb|EER12367.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
Length = 540
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 12/207 (5%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124
EA EDE + N+ SVE +S ++V NLP S L ++F G
Sbjct: 265 EATTEEDEAPAQKKAKLNDGSAQESVERSKS------VFVGNLPFSMTKEWLEQIFSWCG 318
Query: 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR 184
+ V + + E+G +G +L +SA+ A+ +G D GR++RV +S N
Sbjct: 319 DIERVSLPTDWESGKIKGFAFLDFADEDSAEKAV-GKNGEDCEGRDLRVNYSFPKNDNAH 377
Query: 185 NAEALISPPKKIF-----VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + K + E ++VGNL W++ E L FG G++ + DR+
Sbjct: 378 SGKGKGGKGKGKGKGHHELGEKSASVFVGNLPWSMTQEWLSEVFGDCGSITRCFMPTDRE 437
Query: 240 GQTTRVFGFISFSSDAERDAALSLNGT 266
R F +I F ++ + A L+GT
Sbjct: 438 TGNPRGFAYIDFDTEDSAEKATKLSGT 464
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NLP S L E+F G++ + + ETG RG Y+ + +SA+ A L
Sbjct: 403 VFVGNLPWSMTQEWLSEVFGDCGSITRCFMPTDRETGNPRGFAYIDFDTEDSAEKAT-KL 461
Query: 162 DGSDVGGREMRVRFS 176
G+D+ GR++RV ++
Sbjct: 462 SGTDLEGRQIRVNYN 476
>gi|407850128|gb|EKG04639.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 477
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+P + EL +F P+G +LS V RN TG S G ++ S A +AI +
Sbjct: 117 LFISNIPHKMEQRELENLFAPYGQILSAAVMRNIHTGKSLGTAFVRYASTEEAMSAIKGM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G +GGR + V+++ + EA KKI KL+V N+ + L +
Sbjct: 177 SGKRIGGRAIAVQWAKKQHDYAPVGEAR----KKI------SKLFVRNIPLDINTVVLED 226
Query: 222 HFGRFGTVVSARVLHDR----KGQTTRVFGFISFSSD--AERDA 259
F +G V S + D + + R FI+F +D AER A
Sbjct: 227 MFSMYGPVKSVSIHKDTAPDCEKNSERHIAFITFLADGAAERAA 270
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+P E E+F+ FG V S ++R+ ETG SRG G
Sbjct: 229 DRQSKFEE--MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDAETGKSRGFG 286
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ + A A+ L+G D G+++ V + + R R+ EA + +K Y+
Sbjct: 287 FVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEA--ARIEKASKYQ 344
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ LYV NL + E LR F FG++ SA+V+ D +T
Sbjct: 345 GVN-LYVKNLDDDIDDEKLRELFQSFGSITSAKVMRDTPAET 385
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E+G S+G G++ + +A AI +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ESGASKGYGFVHYETDEAAAQAIKHV 209
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 210 NGMLLNEKKVFVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIPVEATEEEFRE 260
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG V SA + D + +R FGF++F
Sbjct: 261 LFEKFGDVTSASLARDAETGKSRGFGFVNF 290
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 20/197 (10%)
Query: 82 NEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
N D D++ P + P LYV L S + L E+F G+V S+ V R+ +
Sbjct: 40 NSEDQDAAGPTPTNAPHPQASASLYVGELDTSVTEAMLFELFSQIGSVASIRVCRDAISR 99
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G Y+ + + A+ L+ + + GR R+ +S + +N +
Sbjct: 100 RSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQG---------- 149
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AER 257
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A
Sbjct: 150 -----NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAAA 203
Query: 258 DAALSLNGTVESHTVAF 274
A +NG + + F
Sbjct: 204 QAIKHVNGMLLNEKKVF 220
>gi|126290015|ref|XP_001367952.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Monodelphis domestica]
Length = 486
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 189 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 248
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 249 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 292
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F S DA AA+ ++ H V
Sbjct: 293 EGDLVEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEV 352
Query: 275 QPLFP 279
+ P
Sbjct: 353 KKAVP 357
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 79 VGGNEVDDDSSVEE-----PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
V GN V+ +V P + A+ +L+V L +L+E F FGTV E+
Sbjct: 254 VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLVEHFSQFGTVEKAEIIA 313
Query: 134 NPETGISRGCGYLTMGSINSAKNAII 159
+ ++G RG G++ S ++A A +
Sbjct: 314 DKQSGKKRGFGFVYFQSHDAADKAAV 339
>gi|24583877|ref|NP_723739.1| arrest, isoform A [Drosophila melanogaster]
gi|281364913|ref|NP_001162963.1| arrest, isoform E [Drosophila melanogaster]
gi|15291827|gb|AAK93182.1| LD29068p [Drosophila melanogaster]
gi|22946320|gb|AAN10812.1| arrest, isoform A [Drosophila melanogaster]
gi|220945910|gb|ACL85498.1| aret-PA [synthetic construct]
gi|220955600|gb|ACL90343.1| aret-PA [synthetic construct]
gi|272407017|gb|ACZ94249.1| arrest, isoform E [Drosophila melanogaster]
Length = 604
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 119 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 164
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 165 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 224
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 225 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 267
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 268 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 293
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 520 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 579
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 580 AMNGFQVGTKRLKVQLKKPKDSK 602
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 522 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 581
Query: 264 NG 265
NG
Sbjct: 582 NG 583
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V++N E G SRG G++ SA +I L
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 187 NNSHFCGRQLHVATFIKKSERSTNNDDKYT------------NLYMKNLDDDITEELIKL 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F ++G V+S +++ R T++ FGF+SF + ++ + A S+NG +
Sbjct: 235 KFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGML 280
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 102 LYVCNLPRSFDISE-LLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL DI+E L+++ F +G V+SV++ + + G S+G G+++ + SAK A
Sbjct: 218 LYMKNLDD--DITEELIKLKFSQYGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKE 274
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPED 218
+++G +G + + V + R + + L + +I + +Y+ N++ V +
Sbjct: 275 SMNGMLLGSKTLYVARAQKKAERKQYLQCLHEEKRNEIITKSNGSNVYIKNINDEVGDDA 334
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LR F FG + SA+++ D KG ++ FGF+ +++ E A+S
Sbjct: 335 LRERFNEFGNITSAKIMRDEKG-ISKGFGFVCYNTPEEAKCAVS 377
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S LLE+F GT+ SV V R+ T S GY+ S A A+ L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + +RV +S R+ +A S +F V NL+ V L+
Sbjct: 100 NHSLILDKPIRVMWS------NRDPDARRSGVGNVF---------VKNLNDLVDNVSLQE 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F +FG ++S +V + G T+R +GF+ F+ DA++
Sbjct: 145 LFCKFGDILSCKVAKNEDG-TSRGYGFVQFALQESADASIQ 184
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L +V+ E L FG+ GT+ S RV D + +G++++ S A DAA++L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA--DAAIALE 97
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
S + + V ++ P R GVG
Sbjct: 98 KLNHS--------LILDKPIRVMWSNRDPDARRSGVG 126
>gi|443687463|gb|ELT90434.1| hypothetical protein CAPTEDRAFT_110688, partial [Capitella teleta]
Length = 353
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V +L + +L E FKPFGT+ ++ R+P+T S+G G+++ A+NAI ++
Sbjct: 88 IFVGDLSPDIETPQLREAFKPFGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINSM 147
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPP--KKIFVYESPHK--LYVGNLSWAVKPE 217
+G +G R +R ++I + E P ++F SP +Y G + + +
Sbjct: 148 NGQWIGSRAIRTNWAIRKPAAPATKETNAQPLTFDEVFKKSSPTNCTVYCGGILSGLTED 207
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT-VESHTV 272
+R+ FG G + RV D+ + FI +++ +A +A + ++ T V HTV
Sbjct: 208 LVRSAFGEHGKIEEIRVFKDKG------YAFIRYNTKEAATEAIVKMHQTEVGGHTV 258
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV NL + L+ +F G ++ ETG + ++ +SA A+ ++
Sbjct: 1 YVGNLDPTVTEDLLMALFGSIGPCKGCKIIH--ETG-NEPYAFVEFSEHSSAALALGTMN 57
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNH 222
GREM+V ++ ++T+ + H ++VG+LS ++ LR
Sbjct: 58 KRTCFGREMKVNWATSPGTQTKQDTS------------KHHHIFVGDLSPDIETPQLREA 105
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FGT+ +++ D + ++ +GF+S+ E + A+ S+NG
Sbjct: 106 FKPFGTISDCKIIRDPQTLKSKGYGFVSYVERKEAENAINSMNG 149
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F ++G + S +V++ G ++R FGF++F DA A + LNG V +PL+
Sbjct: 211 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACMELNG---KELVEGKPLY 264
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L EMF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACMEL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A++ +NG + V
Sbjct: 310 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGT 362
Query: 275 QPLF 278
+PL+
Sbjct: 363 KPLY 366
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGML 163
>gi|442627571|ref|NP_001260404.1| arrest, isoform H [Drosophila melanogaster]
gi|442627573|ref|NP_001260405.1| arrest, isoform I [Drosophila melanogaster]
gi|442627575|ref|NP_001260406.1| arrest, isoform J [Drosophila melanogaster]
gi|442627577|ref|NP_001260407.1| arrest, isoform K [Drosophila melanogaster]
gi|440213734|gb|AGB92939.1| arrest, isoform H [Drosophila melanogaster]
gi|440213735|gb|AGB92940.1| arrest, isoform I [Drosophila melanogaster]
gi|440213736|gb|AGB92941.1| arrest, isoform J [Drosophila melanogaster]
gi|440213737|gb|AGB92942.1| arrest, isoform K [Drosophila melanogaster]
Length = 573
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 88 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 133
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 134 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 193
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 194 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 236
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 237 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 262
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 489 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 548
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 549 AMNGFQVGTKRLKVQLKKPKDSK 571
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 491 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 550
Query: 264 NG 265
NG
Sbjct: 551 NG 552
>gi|442627567|ref|NP_723738.2| arrest, isoform F [Drosophila melanogaster]
gi|440213732|gb|AAN10811.2| arrest, isoform F [Drosophila melanogaster]
Length = 620
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 119 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 164
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + ++A A AL + G
Sbjct: 165 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALHNVKTLNGMYHP 224
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 225 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 267
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 268 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 293
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 536 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 595
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 596 AMNGFQVGTKRLKVQLKKPKDSK 618
Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 538 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 597
Query: 264 NG 265
NG
Sbjct: 598 NG 599
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V + +G S+G G+++ S +AK A+ +
Sbjct: 187 VYIKNFGDEMDDERLKEVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKRAVEEM 245
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + K + F KLY+ NL + E LR
Sbjct: 246 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCRGAKLYIKNLDETIDDEKLR 305
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG++ +V+ + +G+ ++ FG I FSS E A++ +NG +
Sbjct: 306 REFSSFGSISRVKVMQE-EGR-SKGFGLICFSSAEEATKAMTEMNGRI 351
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 23/174 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L + F G VLS+ +P S G Y+ + A
Sbjct: 5 AKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSITC--HPR---SLGYAYVNFLQLADA 59
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 60 QKALDTMNFDLIKGKSIRLMWS------QRDAYLRKSGIGNVFI---------KNLDRSI 104
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D G +R + F+ F + D A+ +NGT+
Sbjct: 105 DNKTLYEHFSAFGKILSSKVMSDDHG--SRGYAFVHFQNQIAADRAIEEMNGTL 156
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R R +LY+ NL + D +L F FG++ V+V + E G S+G G + S A
Sbjct: 284 RCRGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSAEEAT 341
Query: 156 NAIIALDGSDVGGREMRV 173
A+ ++G +G + + +
Sbjct: 342 KAMTEMNGRILGSKPLNI 359
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN--------EVDDDSSV---- 90
+ C +S GF S D V +E+NGK+ G + +V+ + +
Sbjct: 223 MRDCSGKSKGFGFVSYEKHEDANKAV--EEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 91 ----EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFV 338
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S A A+ ++G VG + + V + R
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN--------EVDDDSSV---- 90
+ C +S GF S D V +E+NGK+ G + +V+ + +
Sbjct: 223 MRDCSGKSKGFGFVSYEKHEDANKAV--EEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 91 ----EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFV 338
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S A A+ ++G VG + + V + R
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 88/180 (48%), Gaps = 9/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N P +L +MF FG + S V +NPE G S+G G++ + A+ A+ +
Sbjct: 182 IYVKNFPPDTTDEKLRDMFSEFGEIKSCCVEKNPE-GKSKGFGFVCFHDPDHAEQAVRVM 240
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
G ++ GR + + R + + + ++ Y LYV NL + E L
Sbjct: 241 HGKEINGRALYASRAQRKEERQEELKQRLEKQRAERLSKYVPGVNLYVKNLDDNIDDERL 300
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F +G + SA+V+ D G+ ++ FGF+ F+ + A++ +N T+ V +PL+
Sbjct: 301 KEAFSHYGPITSAKVMTDANGR-SKGFGFVCFTQPEQAARAVTEMNATL----VGSKPLY 355
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 19/175 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L F GTVLS + R+ T S G GY+ A+ A+ L
Sbjct: 3 LYVGDLHPLATEALLYSKFSEIGTVLSARICRDLATRNSLGYGYVNFEEPKDAERALENL 62
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ GR +R+ +S S ++ + I ++ NL + + L +
Sbjct: 63 NYESFMGRPIRIMWSQRDPSLRKSGKGNI---------------FIKNLDKTIDQKQLYD 107
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AERDAALSLNGTVESHTVAF 274
F G ++S ++ D G ++ +GF+ F + AER A +NG + + V +
Sbjct: 108 TFSFIGKILSCKIAMDEHG-NSKGYGFVHFEKEECAER-AIEKINGMMINDRVVY 160
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D +L + F G +LS +++ + E G S+G G++ A+ AI +
Sbjct: 91 IFIKNLDKTIDQKQLYDTFSFIGKILSCKIAMD-EHGNSKGYGFVHFEKEECAERAIEKI 149
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R + V I + R + L + +YV N E LR+
Sbjct: 150 NGMMINDRVVYVGKFIPSSDRKSASGKLRF-----------NNIYVKNFPPDTTDEKLRD 198
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG + S V + +G+ ++ FGF+ F
Sbjct: 199 MFSEFGEIKSCCVEKNPEGK-SKGFGFVCF 227
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKD 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|300121123|emb|CBK21504.2| unnamed protein product [Blastocystis hominis]
Length = 302
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 91/186 (48%), Gaps = 11/186 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ V LP S D S L + F+ G + V N E SRG G++T S +A N +
Sbjct: 5 KVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFAS-EAAFNNALE 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNA-----EALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G++ GR ++V + + R + + + PK+ +K+ + +L+W+V
Sbjct: 64 KNGAEFDGRTIKVEKATERPKRDQKENKDRPQHEQAAPKEFI---DTNKIIITSLAWSVN 120
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT-VESHTVA 273
+ LR F ++G + VL DR+ +R G + F++ +A + A +NGT +E +A
Sbjct: 121 DDSLRQAFSKYGNLEECTVLKDRQSGKSRGRGIVRFATEEAMKKAIEEMNGTELEGRAIA 180
Query: 274 FQPLFP 279
+ P
Sbjct: 181 VRQFLP 186
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +K+ V L ++ L ++F G + +RV+ +R+ + +R FGF++F+S+A + A
Sbjct: 2 SENKVIVLGLPFSCDDSALYDYFQECGEITDSRVMVNRENKKSRGFGFVTFASEAAFNNA 61
Query: 261 LSLNG 265
L NG
Sbjct: 62 LEKNG 66
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F G LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 305
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 306 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 359
Query: 277 LF 278
L+
Sbjct: 360 LY 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 356
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 357 TKPLYVALAQRKEER 371
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN--------EVDDDSSV---- 90
+ C +S GF S D V +E+NGK+ G + +V+ + +
Sbjct: 223 MRDCSGKSKGFGFVSYEKHEDANKAV--EEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 91 ----EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFV 338
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S A A+ ++G VG + + V + R
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL D L E+F FG +LS +V++N E G SRG G++ SA +I L
Sbjct: 128 VFVKNLNDLVDNVSLQELFCKFGDILSCKVAKN-EDGTSRGYGFVQFALQESADASIQNL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S GR++ V I + R+ N + + LY+ NL + E ++
Sbjct: 187 NNSHFCGRQLHVATFIKKSERSTNNDDKYT------------NLYMKNLDDDITEELIKL 234
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F ++G V+S +++ R T++ FGF+SF + ++ + A S+NG +
Sbjct: 235 KFSQYGLVISVKIM-KRDDGTSKGFGFVSFQNPESAKRAKESMNGML 280
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 7/164 (4%)
Query: 102 LYVCNLPRSFDISE-LLEM-FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL DI+E L+++ F +G V+SV++ + + G S+G G+++ + SAK A
Sbjct: 218 LYMKNLDD--DITEELIKLKFSQYGLVISVKIMKR-DDGTSKGFGFVSFQNPESAKRAKE 274
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPED 218
+++G +G + + V + R + + L + +I + +Y+ N++ V +
Sbjct: 275 SMNGMLLGSKTLYVARAQKKAERKQYLQRLHEEKRNEIITKSNGSNVYIKNINDEVGDDA 334
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LR F FG + SA+++ D KG ++ FGF+ +++ E A+S
Sbjct: 335 LRERFNEFGNITSAKIMRDEKG-ISKGFGFVCYNTPEEAKCAVS 377
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S LLE+F GT+ SV V R+ T S GY+ S A A+ L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQADAAIALEKL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + + +RV +S R+ +A S +F V NL+ V L+
Sbjct: 100 NHSLILDKPIRVMWS------NRDPDARRSGVGNVF---------VKNLNDLVDNVSLQE 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
F +FG ++S +V + G T+R +GF+ F+ DA++
Sbjct: 145 LFCKFGDILSCKVAKNEDG-TSRGYGFVQFALQESADASIQ 184
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L +V+ E L FG+ GT+ S RV D + +G++++ S A DAA++L
Sbjct: 40 LYVGDLHESVREEHLLEVFGKIGTLTSVRVCRDNATSNSLRYGYVNYLSQA--DAAIALE 97
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
S + + V ++ P R GVG
Sbjct: 98 KLNHS--------LILDKPIRVMWSNRDPDARRSGVG 126
>gi|71652518|ref|XP_814914.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70879928|gb|EAN93063.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 477
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+P + EL +F P+G +LS V RN TG S G ++ S A +AI +
Sbjct: 117 LFISNIPHKMEQRELENLFAPYGQILSAAVMRNIHTGKSLGTAFVRYASTEEAMSAIKGM 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G +GGR + V+++ + EA KKI KL+V N+ + L +
Sbjct: 177 SGKRIGGRAIAVQWAKKQHDYAPVGEAR----KKI------SKLFVRNIPLDINTVVLED 226
Query: 222 HFGRFGTVVSARVLHDR----KGQTTRVFGFISFSSD--AERDA 259
F +G V S + D + + R FI+F +D AER A
Sbjct: 227 MFNMYGPVKSVSIHKDTAPDCEKNSERHIAFITFLADGAAERAA 270
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+ +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ + F+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 69/156 (44%), Gaps = 20/156 (12%)
Query: 43 LSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN--------EVDDDSSV---- 90
+ C +S GF S D V +E+NGK+ G + +V+ + +
Sbjct: 223 MRDCSGKSKGFGFVSYEKHEDANKAV--EEMNGKEMSGKSIFVGRAQKKVERQAELKRKF 280
Query: 91 ----EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++
Sbjct: 281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFV 338
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
S A A+ ++G VG + + V + R
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F G LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 305
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 306 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 359
Query: 277 LF 278
L+
Sbjct: 360 LY 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 356
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 357 TKPLYVALAQRKEER 371
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F G LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 305
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 306 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 359
Query: 277 LF 278
L+
Sbjct: 360 LY 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 356
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 357 TKPLYVALAQRKEER 371
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F ++G + S +V++ G ++R FGF++F DA A + LNG V +PL+
Sbjct: 211 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACMELNG---KELVEGKPLY 264
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L EMF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 194 VYVKNFGEDFSDEMLREMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACMEL 252
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 253 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A++ +NG + V
Sbjct: 310 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGT 362
Query: 275 QPLF 278
+PL+
Sbjct: 363 KPLY 366
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEGM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKTIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFTAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGML 163
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 18/182 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F P LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGP---ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 248
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 249 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 305
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 306 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 359
Query: 277 LF 278
L+
Sbjct: 360 LY 361
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 356
Query: 168 GREMRV 173
+ + V
Sbjct: 357 TKPLYV 362
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + + F FG V +V + ++ G SRG G++ S + AK A+ AL
Sbjct: 209 VYVKNLGEDLTEDIIRDKFSEFGKVGTVVIMKDG-NGKSRGFGFVNFESPDEAKKAVEAL 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI----FVYESPHKLYVGNLSWAVKPE 217
+G+ +G +++ V + R + L+ K++ E LYV NL +V +
Sbjct: 268 NGAMLGSKKLFVGRAQKKAER----QELLKHEKEMVNCNIGKEKASNLYVKNLDASVDDD 323
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
L+ HF G + SA+V+ G ++ FGF+ FS+ E AL +LNGT+
Sbjct: 324 KLQEHFSSCGQITSAKVMRHDSG-LSKGFGFVCFSTSEEAQKALTTLNGTL 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S + + L ++F FG +LS +V+ E G S+ G++ S +SA A+ AL
Sbjct: 119 LFVKNLDPSINSASLQDIFCKFGNILSCKVAE--ENGKSKCFGFVQFDSDDSATAALNAL 176
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+++ V + R +E + F +YV NL + + +R+
Sbjct: 177 NDTMLDGKKLFVSKFVKKCERKEASE------ETKFT-----NVYVKNLGEDLTEDIIRD 225
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG V + ++ D G+ +R FGF++F S D + A +LNG +
Sbjct: 226 KFSEFGKVGTVVIMKDGNGK-SRGFGFVNFESPDEAKKAVEALNGAM 271
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ + LYV NL S D +L E F G + S +V R+ ++G+S+G G++ + A+
Sbjct: 305 KEKASNLYVKNLDASVDDDKLQEHFSSCGQITSAKVMRH-DSGLSKGFGFVCFSTSEEAQ 363
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTR 184
A+ L+G+ + GR + + + R R
Sbjct: 364 KALTTLNGTLLHGRSLYIAMAQRKEDRQR 392
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKD 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKDMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG S + R+ E G S+G G++ + + A A+ AL
Sbjct: 220 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 278
Query: 162 DGSDVGGREMRVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R T + K+ LYV NL +V + LR
Sbjct: 279 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 338
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
HF FGT+ S +V+ D G +R GF++FS+ E A++ +NG + + +PL+
Sbjct: 339 EHFAPFGTITSCKVMRDPTG-VSRGSGFVAFSTPEEASRAITEMNGKM----IVTKPLY 392
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV +P R +++ NL +S D L E F FG +LS +V+ +P +G S+G G++
Sbjct: 115 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQ 173
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+ AI L+G + +++ V + R + E K F +YV
Sbjct: 174 YDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGE------KVKFT-----NVYV 222
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
NLS ++ E+L FG FG S ++ D +G+ ++ FGF++F S DA R A +LNG
Sbjct: 223 KNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAAR-AVDALNG 280
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E F G V+SV V R+ T S G GY+ + A A+ L
Sbjct: 41 LYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 100
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +RV +S+ S ++ +++ NL ++ + L
Sbjct: 101 NFMALNGRAIRVMYSVRDPSLRKSGVG---------------NIFIKNLDKSIDHKALHE 145
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S +V D GQ ++ +GF+ + +D A + A LNG +
Sbjct: 146 TFSAFGPILSCKVAVDPSGQ-SKGYGFVQYDTDEAAQRAIDKLNGML 191
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E +++ LYV NL S +L E F PFGT+ S +V R+P TG+SRG G++
Sbjct: 308 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-TGVSRGSGFV 366
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A AI ++G + + + V + R +A S
Sbjct: 367 AFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFS 411
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ +P +G S+G G++ S +A+ AI L
Sbjct: 115 IFIKNLDKAIDHKALHDTFSAFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKL 173
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E + K F + ++V NLS EDL
Sbjct: 174 NGMLLNDKQVYV------GPFLRKQERDTATDKMRF-----NNVFVKNLSETTTEEDLNK 222
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FGT+ S V+ D G+ ++ FGF++F + DA + A +LNG
Sbjct: 223 TFGEFGTITSIVVMRDGDGK-SKCFGFVNFENAEDAAK-AVEALNG 266
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L + F FGT+ S+ V R+ + G S+ G++ + A A+ AL
Sbjct: 206 VFVKNLSETTTEEDLNKTFGEFGTITSIVVMRDGD-GKSKCFGFVNFENAEDAAKAVEAL 264
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V ++ ++ + R +++ K LY+ NL ++
Sbjct: 265 NGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKF----QGANLYIKNLDDSIGD 320
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTVESHTVAFQ 275
E L+ F FGT+ S +V+ D G +R GF++FS+ E A L +NG + V +
Sbjct: 321 EKLKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASRALLEMNGKI----VVSK 375
Query: 276 PLF 278
PL+
Sbjct: 376 PLY 378
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S +L E+F PFGT+ S +V R+P GISRG G++
Sbjct: 294 EQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDP-NGISRGSGFV 352
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A++ ++G V + + V + R +A S
Sbjct: 353 AFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFS 397
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L +V L + F + G VVS RV D + + +G++++S+ +DAA +L
Sbjct: 27 LYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSN--PQDAARAL- 83
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL + V +++ P+ R G G
Sbjct: 84 -----EMLNFTPL--NGSPIRVMYSHRDPTIRKSGAG 113
>gi|195351033|ref|XP_002042041.1| GM26763 [Drosophila sechellia]
gi|194123865|gb|EDW45908.1| GM26763 [Drosophila sechellia]
Length = 816
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 319 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 366
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 367 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 426
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 427 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 469
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 470 LRDQNGQ-SKGCAFVTF---ATKHAAIS 493
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 732 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 791
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 792 AMNGFQVGTKRLKVQLKKPKDSK 814
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 734 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 793
Query: 264 NG 265
NG
Sbjct: 794 NG 795
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG S + R+ E G S+G G++ + + A A+ AL
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVDAL 284
Query: 162 DGSDVGGREMRVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R T + K+ LYV NL +V + LR
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
HF FGT+ S +V+ D G +R GF++FS+ E A++ +NG + + +PL+
Sbjct: 345 EHFAPFGTITSCKVMRDPSG-VSRGSGFVAFSTPEEATRAITEMNGKM----IVTKPLY 398
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 93/180 (51%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV +P R +++ NL +S D L E F FG +LS +V+ +P +G S+G G++
Sbjct: 121 SVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQ 179
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+ AI L+G + +++ V + R + E K F +YV
Sbjct: 180 YDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGE------KVKFT-----NVYV 228
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
NLS ++ E+L FG FG S ++ D +G+ ++ FGF++F S DA R A +LNG
Sbjct: 229 KNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAAR-AVDALNG 286
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L E F G V+SV V R+ T S G GY+ + A A+ L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +RV +S+ S ++ +++ NL ++ + L
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVG---------------NIFIKNLDKSIDHKALHE 151
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D GQ ++ +GF+ + +D A+ LNG +
Sbjct: 152 TFSAFGPILSCKVAVDPSGQ-SKGYGFVQYDTDEAAQGAIDKLNGML 197
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E +++ LYV NL S +L E F PFGT+ S +V R+P +G+SRG G++
Sbjct: 314 EQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFV 372
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A AI ++G + + + V + R +A S
Sbjct: 373 AFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFS 417
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G S+G G++ + +A +I +
Sbjct: 144 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L++
Sbjct: 203 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTEDKLKD 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 254 MFEKYGTITSHKVMSKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 297
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L +MF+ +GT+ S +V + + G SRG G++ ++A+ A++ L
Sbjct: 237 VYVKNFGEDMTEDKLKDMFEKYGTITSHKVM-SKDDGKSRGFGFVAFEDPDAAEQAVLEL 295
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ M V + R + + K ++ Y+ + LYV NL + E
Sbjct: 296 NGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-LYVKNLDDTIDDER 354
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS E A++ +NG + V +PL
Sbjct: 355 LRKEFTPFGTITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRI----VGSKPL 408
Query: 278 F 278
+
Sbjct: 409 Y 409
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-LYVKNLDDSINDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRREFAPFGTITSAKVMME--DGRSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDKVNGML 163
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E G S+G G++ + +A +I +
Sbjct: 92 VFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQD-ENGASKGYGFVHFETEEAANKSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N E LR+
Sbjct: 151 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLRD 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F ++G + S +V++ G ++R FGF++F DA A L LNG V +PL+
Sbjct: 202 MFEKYGRITSHKVMYKEDG-SSRGFGFVAFEDPDAAERACLELNG---KELVEGKPLY 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L +MF+ +G + S +V E G SRG G++ ++A+ A + L
Sbjct: 185 VYVKNFGEDFSDEMLRDMFEKYGRITSHKVMYK-EDGSSRGFGFVAFEDPDAAERACLEL 243
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 244 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 300
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A++ +NG + V
Sbjct: 301 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGT 353
Query: 275 QPLF 278
+PL+
Sbjct: 354 KPLY 357
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ + A+ A+ +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL A+ + + +
Sbjct: 64 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKAIDNKAMYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVAQDENG-ASKGYGFVHFETEEAANKSIEKVNGML 154
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR + +++ NL +S D L + F FGT+LS +V+ +G S+G G++
Sbjct: 118 SNRDPSSRKSGAANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEI-SGESKGYGFVQ 176
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
SA+NAI L+G + +++ V + R + E + PK + +YV
Sbjct: 177 YEQDESAQNAINELNGMLLNDKKVYVGPFV----RKQERENVFGSPKF-------NNVYV 225
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NLS + ++L+ FG+FG + S V+ G+ +R FGF++F + DA R A LNG
Sbjct: 226 KNLSESTTEDNLKEMFGKFGPITSVIVVRADDGK-SRCFGFVNFENPDDAAR-AVEDLNG 283
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAMEML 103
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + V G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 104 NFTPVNGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALF 147
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
+ F FGT++S +V + G+ ++ +GF+ + D A++ LNG +
Sbjct: 148 DTFSAFGTILSCKVATEISGE-SKGYGFVQYEQDESAQNAINELNGML 194
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ S +E + + LY+ NL S D E L E+F FGT+ S +V R+ G+++G G+
Sbjct: 311 EKSNKETADKNQGTNLYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRD-SNGVNKGSGF 369
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G VG + + V + R +A S
Sbjct: 370 VAFKSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFS 415
>gi|259089631|gb|ACV91671.1| AT31783p [Drosophila melanogaster]
Length = 810
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 325 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 372
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 373 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 432
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 433 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 476 LRDQNGQ-SKGCAFVTF---ATKHAAIS 499
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 726 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 785
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 786 AMNGFQVGTKRLKVQLKKPKDSK 808
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 728 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 787
Query: 264 NG 265
NG
Sbjct: 788 NG 789
>gi|255089439|ref|XP_002506641.1| predicted protein [Micromonas sp. RCC299]
gi|226521914|gb|ACO67899.1| predicted protein [Micromonas sp. RCC299]
Length = 285
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 87/168 (51%), Gaps = 11/168 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+P S + EL +F GT+ V++ + G SRG G + ++N A+ AI L
Sbjct: 9 LYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQ-GRSRGYGIVEYSNVNEAQVAIQTL 67
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH----KLYVGNLSWAVKPE 217
DG +G R + VR + + T++A + S + + ++P + YVGNL+W E
Sbjct: 68 DGHTLGDRNITVR---EDKAPTKSAPSK-SGGNRSTIGDTPAADGCRCYVGNLAWETNEE 123
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
L H + GTVV A V G+ ++ +G + F + DA A +L+
Sbjct: 124 SLIAHCSQVGTVVQAEVAKQPGGR-SKGWGLVDFETPDAANSAINTLH 170
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 80/176 (45%), Gaps = 9/176 (5%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A C YV NL + L+ GTV+ EV++ P G S+G G + + ++A +
Sbjct: 106 ADGCRCYVGNLAWETNEESLIAHCSQVGTVVQAEVAKQP-GGRSKGWGLVDFETPDAANS 164
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
AI L SD+ GR + VR R A P S ++ V NL W+
Sbjct: 165 AINTLHNSDLQGRSIIVRLE-----RAGGANKSGGPNAGRPEASSGLQIVVRNLPWSTTS 219
Query: 217 EDLRNHFGRFGTVVSAR-VLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
EDLR F + GTV+ A V H G+ ++ +G + F + + AA+ NG H
Sbjct: 220 EDLRQVFQQVGTVIKAEAVCHADTGR-SKGWGTVLFETREQAQAAIQGFNGVELEH 274
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ V NLP S +L ++F+ GTV+ E + +TG S+G G + + A+ AI
Sbjct: 207 QIVVRNLPWSTTSEDLRQVFQQVGTVIKAEAVCHADTGRSKGWGTVLFETREQAQAAIQG 266
Query: 161 LDGSDVGGREMRVRF 175
+G ++ R M+++
Sbjct: 267 FNGVELEHRPMQIKL 281
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 200 ESP-HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
E P ++LYVGN+ W+ ++LR F GT+ + R+G+ +R +G + +S+ E
Sbjct: 3 EGPTNRLYVGNIPWSTTVDELRGIFSGCGTITLVDIPTGRQGR-SRGYGIVEYSNVNEAQ 61
Query: 259 AALSLNGTVESHTVA 273
A+ T++ HT+
Sbjct: 62 VAIQ---TLDGHTLG 73
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 16/186 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPF-----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
+YV NL D L E+F F G +LSV+V R+ ++G SRG G++ A+
Sbjct: 193 IYVKNLQVDMDEWGLQELFSQFDWSSPGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQK 251
Query: 157 AIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A++ ++G +V GR + R + ++ + + + + + LYV NL +
Sbjct: 252 AVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDS 311
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTV 272
+ E LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG + V
Sbjct: 312 INDEKLRKEFSPYGMITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----V 365
Query: 273 AFQPLF 278
+PL+
Sbjct: 366 GTKPLY 371
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V+ D G +R FGF+ F + A+S +NG +
Sbjct: 118 TFSTFGNILSCKVVCDDHG--SRGFGFVHFETHEAAQLAISTMNGML 162
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R R LYV NL S + +L + F P+G + S +V E G S+G G++ S
Sbjct: 295 RYHVRGVNLYVKNLDDSINDEKLRKEFSPYGMITSAKVM--TEGGHSKGFGFVCFSSPEE 352
Query: 154 AKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G VG + + V +
Sbjct: 353 ATKAVTEMNGRIVGTKPLYVALA 375
>gi|2231301|gb|AAB61993.1| testis-specific RNP-type RNA binding protein [Drosophila
melanogaster]
Length = 808
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 323 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 370
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 371 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 430
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 431 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 473
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 474 LRDQNGQ-SKGCAFVTF---ATKHAAIS 497
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 724 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 783
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 784 AMNGFQVGTKRLKVQLKKPKDSK 806
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 726 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 785
Query: 264 NG 265
NG
Sbjct: 786 NG 787
>gi|294951822|ref|XP_002787139.1| nucleolar protein, putative [Perkinsus marinus ATCC 50983]
gi|239901796|gb|EER18935.1| nucleolar protein, putative [Perkinsus marinus ATCC 50983]
Length = 756
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 10/205 (4%)
Query: 65 EAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG 124
EA EDE N+ SVE +S +++ NLP S L ++F G
Sbjct: 483 EATTEEDEAPAPKRAKMNDGSAQESVERSKS------VFIGNLPFSMTKEWLEQIFSWCG 536
Query: 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTR 184
+ V + + E+G +G +L +SA+ A+ +G D GR++R+ +S N
Sbjct: 537 DIERVSIPTDWESGKIKGFAFLDFADEDSAEKAV-GKNGEDCEGRDLRINYSFPKNDNAH 595
Query: 185 NAEALISPPKKIFVYESPHK---LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ K +E K ++VGNL W++ + L FG G++ + DR+
Sbjct: 596 GGKGKGGKGKGKGHHELGEKSASVFVGNLPWSMTQDWLYEVFGDCGSITRCFMPTDRETG 655
Query: 242 TTRVFGFISFSSDAERDAALSLNGT 266
R F +I F ++ + A L+GT
Sbjct: 656 NPRGFAYIDFDTEDSAENATKLSGT 680
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NLP S L E+F G++ + + ETG RG Y+ + +SA+NA L
Sbjct: 619 VFVGNLPWSMTQDWLYEVFGDCGSITRCFMPTDRETGNPRGFAYIDFDTEDSAENAT-KL 677
Query: 162 DGSDVGGREMRVRFS 176
G+D+ GR++RV ++
Sbjct: 678 SGTDLEGRQIRVNYN 692
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+A+ LY+ NL E E+F +G+V S V + E G S+G G++ S A+
Sbjct: 222 KAQFTNLYIKNLDTEVTQEEFEELFNRYGSVTSAIVQVDDE-GRSKGFGFVNYESHEEAQ 280
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ L +D+ G+++ V + R K K+ Y+ + LYV NL
Sbjct: 281 AAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQAKMEKLSKYQGVN-LYVKNLEDD 339
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273
V + LR F FGT+ S +V+ D KG +++ FGF+ FSS E A++ + + +
Sbjct: 340 VDDDKLRAEFEPFGTITSCKVMSDEKG-SSKGFGFVCFSSPDEATKAIA---EMNNKMIG 395
Query: 274 FQPLF 278
+PL+
Sbjct: 396 SKPLY 400
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S A LYV L + + + E+F G V S+ V R+ T S G Y+ +
Sbjct: 40 SSAPSASLYVGELDPTVTEAMIFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNTADG 99
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ S + GR R+ +S + + + +++ NL +
Sbjct: 100 ERALEQLNYSLIKGRPCRIMWSQRDPALRKTGQG---------------NIFIKNLDEQI 144
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG V+S +V D +G+ ++ +GF+ + +++A A ++NG +
Sbjct: 145 DNKALHDTFVAFGNVLSCKVATDEQGR-SKGYGFVHYETAEAAETAIKAVNGML 197
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + LYV NL D +L F+PFGT+ S +V + E G S+G G++ S
Sbjct: 321 EKLSKYQGVNLYVKNLEDDVDDDKLRAEFEPFGTITSCKVMSD-EKGSSKGFGFVCFSSP 379
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A AI ++ +G + + V + R + E+ I+ +I + ++
Sbjct: 380 DEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQRNQIRMQQA 429
>gi|432877083|ref|XP_004073098.1| PREDICTED: RNA-binding protein Musashi homolog Rbp6-like [Oryzias
latipes]
Length = 347
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 5/193 (2%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
+E +RA+ +++V L +L + F +G V + E+ TG RG G++
Sbjct: 85 KQADESEARAKVKKIFVGGLKNDIQEDDLTDYFSQYGEVENSEIISEKTTGKKRGFGFVH 144
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A + +A+ V G + V+ ++ PK ++ KL+V
Sbjct: 145 F-TDDYAADMAVAVPFHIVNGHRVEVKKAVPKQEMQIKPNTSYDLPK---MFNQACKLFV 200
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN-GT 266
G L + LR HF +FGT++ V+ + Q +R FGF+++ + E +AA++ + T
Sbjct: 201 GGLKVDTNDDGLRKHFEQFGTLIDCAVVPHKTAQRSRCFGFVTYLTPEEANAAMAASPHT 260
Query: 267 VESHTVAFQPLFP 279
VE + V + P
Sbjct: 261 VEGNWVEVKRAVP 273
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ C+L+V L + L + F+ FGT++ V + SR G++T + A NA
Sbjct: 4 QACKLFVGGLKVDTNDDGLRKHFEQFGTLIDCAVVPHKTAQRSRCFGFVTYLTPEEA-NA 62
Query: 158 IIALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+A V G + V+ ++ + A A + K++VG L ++
Sbjct: 63 AMAASPHTVEGNWVEVKRAVPKKQADESEARAKVK------------KIFVGGLKNDIQE 110
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN-GTVESHTVAFQ 275
+DL ++F ++G V ++ ++ ++ R FGF+ F+ D D A+++ V H V +
Sbjct: 111 DDLTDYFSQYGEVENSEIISEKTTGKKRGFGFVHFTDDYAADMAVAVPFHIVNGHRVEVK 170
Query: 276 PLFP 279
P
Sbjct: 171 KAVP 174
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ + +L ++F P+G + S+ + ++ E G S+G G
Sbjct: 220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 337 N-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 394
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 159 TFSTFGKILSCKVATDDMGQ-SKCFGFVHY 187
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCEL 102
G + + V+E + + EING+ G +EE + S+ + L
Sbjct: 282 GHEAAVKAVEE---LNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNL 338
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
++ NL + D +L E FKPFGT+ S V + ETG S+G G++ S A AI ++
Sbjct: 339 FIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMN 397
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G+ + V + + R E I
Sbjct: 398 QRMFFGKPLYVALAQRKDVRRSQLEQQIQ 426
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLSRYQGVN-LYVKNLDDSINDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRREFAPFGTITSAKVMME--DGRSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDKVNGML 163
>gi|194861289|ref|XP_001969750.1| GG23776 [Drosophila erecta]
gi|190661617|gb|EDV58809.1| GG23776 [Drosophila erecta]
Length = 837
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 340 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 387
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 388 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 447
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 448 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 490
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 491 LRDQNGQ-SKGCAFVTF---ATKHAAIS 514
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 753 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 812
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 813 AMNGFQVGTKRLKVQLKKPKDSK 835
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 755 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 814
Query: 264 NG 265
NG
Sbjct: 815 NG 816
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 15/169 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FGT+LS V + + G S+G G++ SA+ AI
Sbjct: 114 ANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMD-DAGNSKGYGFVQFEKEESAQIAIE 172
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++G + R++ V I R E ++ K + +YV NL+ A EDL
Sbjct: 173 KVNGMLINDRQVSVAPFI------RKQERDMASSKNF------NNVYVKNLAEATTDEDL 220
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
R F FG + SA V+ D G+ ++ FGF++F + D +A +LNG +
Sbjct: 221 RKVFAGFGPISSAVVMRDADGK-SKCFGFVNFENVDDAANAVENLNGKL 268
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L SEL E+F G V+S+ V R+ T S G Y+ G+ A A+ L
Sbjct: 28 LYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQALELL 87
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ +S S ++ A +++ NL ++ + L +
Sbjct: 88 NFTLVKGKPIRIMYSHRDPSIRKSGAA---------------NIFIKNLEKSIDNKALHD 132
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FGT++S RV+ D G ++ +GF+ F + A+ +NG +
Sbjct: 133 TFSAFGTILSCRVVMDDAG-NSKGYGFVQFEKEESAQIAIEKVNGML 178
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L ++F FG + S V R+ + G S+ G++ +++ A NA+ L
Sbjct: 206 VYVKNLAEATTDEDLRKVFAGFGPISSAVVMRDAD-GKSKCFGFVNFENVDDAANAVENL 264
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKP 216
+G + +E V + + R +A +K E K LY+ N+ ++
Sbjct: 265 NGKLINEKEWYVGRAQKKSEREAELKAKFEQVRK----EKEEKFQGVNLYLKNIDDSIDD 320
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
E LR F FGTV S +V+ +GQ+ GF++FS+ E A++ +NG + V +
Sbjct: 321 EKLRELFAVFGTVTSCKVMKSPQGQSMGS-GFVTFSAPEEAMQAVNDMNGKM----VGSK 375
Query: 276 PLF 278
PL+
Sbjct: 376 PLY 378
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E + + LY+ N+ S D +L E+F FGTV S +V ++P+ G S G G++T +
Sbjct: 298 KEKEEKFQGVNLYLKNIDDSIDDEKLRELFAVFGTVTSCKVMKSPQ-GQSMGSGFVTFSA 356
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
A A+ ++G VG + + V + R +A
Sbjct: 357 PEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQA 394
>gi|226532108|ref|NP_001142375.1| uncharacterized protein LOC100274547 [Zea mays]
gi|194708524|gb|ACF88346.1| unknown [Zea mays]
Length = 163
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI---DMNSRTRN 185
VEV + TG SRG G++TM S A A+ +G GR +RV S R
Sbjct: 2 VEVVYDRMTGRSRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPRDGSAPRA 61
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
+S +K+YVGNL+W V L N F G V+ A+V++DR +R
Sbjct: 62 PRGGGGGGGGGSFVDSGNKVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRG 121
Query: 246 FGFISFSSDAERDAALS 262
FGF+++ S E + A+S
Sbjct: 122 FGFVTYGSAEEVNNAIS 138
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NL D S L +F G VL +V + ++G SRG G++T GS NAI
Sbjct: 80 KVYVGNLAWGVDNSTLENLFSEQGQVLDAKVIYDRDSGRSRGFGFVTYGSAEEVNNAISN 139
Query: 161 LDGSDVGGREMRV 173
LDG D+ GR++RV
Sbjct: 140 LDGIDLDGRQIRV 152
>gi|2148976|gb|AAB58464.1| bruno [Drosophila melanogaster]
Length = 604
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 38/210 (18%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDI 113
R+V+A+VD++A +D D++V P +++V +P+S D
Sbjct: 119 RNVVAMVDDDACF--------------RLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDE 164
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMR 172
S+L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G
Sbjct: 165 SQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHP 224
Query: 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
++ +S RN KL+VG L+ + D+R F G +
Sbjct: 225 IQMK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEEC 267
Query: 233 RVLHDRKGQTTRVFGFISFSSDAERDAALS 262
VL D+ GQ ++ F++F A + AA+S
Sbjct: 268 TVLRDQNGQ-SKGCAFVTF---ATKHAAIS 293
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 520 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 579
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 580 AMNGFQVGTKRLKVQLKKPKDSK 602
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 522 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 581
Query: 264 NG 265
NG
Sbjct: 582 NG 583
>gi|395817866|ref|XP_003782366.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Otolemur
garnettii]
Length = 238
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|116180414|ref|XP_001220056.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
gi|88185132|gb|EAQ92600.1| hypothetical protein CHGG_00835 [Chaetomium globosum CBS 148.51]
Length = 475
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ L+V NL D + L E F+ ++S V + ETG SRG GY+ S +A+ A
Sbjct: 219 KSATLWVGNLGWGVDDNALYEEFQSIEGIVSARVVSDKETGRSRGFGYVDFDSAEAAQKA 278
Query: 158 IIALDGSDVGGREMRVRF----SIDMNSRTRNAE------ALISPPKKIFVYESPHKLYV 207
G+ + GR++R+ F S D R A+ +ISPP L+V
Sbjct: 279 YDEKSGAFLQGRDLRLDFASKPSADSAPNARAADRAKKHGDVISPPSDT--------LFV 330
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
GNL ++ + N+F V S R+ D++ + F +++FSS D + +LNG
Sbjct: 331 GNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEALNG 389
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S D S + F V S+ + + E+G +G Y+T SI+ AK AL
Sbjct: 328 LFVGNLPFSADESSVSNYFNEVAQVQSLRIPTDQESGRPKGFAYVTFSSIDDAKKVFEAL 387
Query: 162 DGSDVGGREMRVRFS 176
+G D+ GR +R+ ++
Sbjct: 388 NGGDLDGRPVRLDYA 402
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V + +G S+G G+++ S +AK A+ +
Sbjct: 192 VYIKNFGDEMDDERLNEVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKRAVEEM 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + K + F KLY+ NL + E LR
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHERFRRCQGAKLYIKNLDETIDDEKLR 310
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG++ +V+ + +G+ ++ FG I FSS E A++ +NG +
Sbjct: 311 REFSSFGSISRVKVMQE-EGR-SKGFGLICFSSAEEATKAMTEMNGRI 356
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L + F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRQASLYVGDLHADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDLIKGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLDRSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D G +R + F+ F + D A+ +NG +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDHG--SRGYAFVHFQNQIAADRAIEEMNGAL 161
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR-------SR 96
SH A R+V +E+NGKD VG + + E + R
Sbjct: 239 SHEAAKRAV------------EEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQLKHER 286
Query: 97 ARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R C+ LY+ NL + D +L F FG++ V+V + E G S+G G + S
Sbjct: 287 FRRCQGAKLYIKNLDETIDDEKLRREFSSFGSISRVKVMQ--EEGRSKGFGLICFSSAEE 344
Query: 154 AKNAIIALDGSDVGGREMRV 173
A A+ ++G +G + + +
Sbjct: 345 ATKAMTEMNGRILGSKPLNI 364
>gi|195472345|ref|XP_002088461.1| GE18580 [Drosophila yakuba]
gi|194174562|gb|EDW88173.1| GE18580 [Drosophila yakuba]
Length = 830
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 333 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 380
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 381 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 440
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 441 MK-PADSENRNE----------------RKLFVGMLNKKLNENDVRKLFEVHGAIEECTV 483
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 484 LRDQNGQ-SKGCAFVTF---ATKHAAIS 507
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 746 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 805
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 806 AMNGFQVGTKRLKVQLKKPKDSK 828
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 748 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 807
Query: 264 NG 265
NG
Sbjct: 808 NG 809
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 15/167 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL S S L +F +GT+LS +V+ E G S+G G++ S +SA A AL
Sbjct: 107 LFVKNLDFSISSSCLESIFSKYGTILSCKVA--GENGRSKGFGFVQFESQDSALVAQTAL 164
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +GG+++ V + RT A P ++F LYV NL + + L++
Sbjct: 165 HDTMLGGKKLHVCKFVKKTERTAAA------PCEVFT-----NLYVKNLDETITEDGLKD 213
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F G V S ++ D +G++ FGF++F S D + A +NG+V
Sbjct: 214 MFSVVGDVSSVAIMMDHEGKSKH-FGFVNFKSPDDAKKAVDVMNGSV 259
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 94 RSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R+ A PCE LYV NL + L +MF G V SV + + E G S+ G++
Sbjct: 185 RTAAAPCEVFTNLYVKNLDETITEDGLKDMFSVVGDVSSVAIMMDHE-GKSKHFGFVNFK 243
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL---- 205
S + AK A+ ++GS +G + + V + + RT ++ K S KL
Sbjct: 244 SPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERT----MILKQEYKDLHNRSTEKLRASN 299
Query: 206 -YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
YV NL+ + + L+ F +G ++S +V+ G T++ FGF+ F+S E + AL +L
Sbjct: 300 LYVKNLNVDIDDKKLKEVFSAYGKILSVKVICHNDG-TSKQFGFVCFASPEEANKALVAL 358
Query: 264 NG 265
NG
Sbjct: 359 NG 360
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|195578717|ref|XP_002079210.1| GD23828 [Drosophila simulans]
gi|194191219|gb|EDX04795.1| GD23828 [Drosophila simulans]
Length = 821
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 34/208 (16%)
Query: 56 RSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE 115
R+V+A+VD++A D + G E D D+ +++V +P+S D S+
Sbjct: 324 RNVVAMVDDDACFRLD-TDATVTYGEKEPDPDN-----------IKMFVGQVPKSMDESQ 371
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVR 174
L EMF+ +G V S+ V R+ TGIS+GC ++T + +A A AL + G ++
Sbjct: 372 LREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQ 431
Query: 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
+S RN KL+VG L+ + D+R F G + V
Sbjct: 432 MK-PADSENRNER----------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTV 474
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALS 262
L D+ GQ ++ F++F A + AA+S
Sbjct: 475 LRDQNGQ-SKGCAFVTF---ATKHAAIS 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 52/83 (62%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 737 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 796
Query: 160 ALDGSDVGGREMRVRFSIDMNSR 182
A++G VG + ++V+ +S+
Sbjct: 797 AMNGFQVGTKRLKVQLKKPKDSK 819
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 739 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 798
Query: 264 NG 265
NG
Sbjct: 799 NG 800
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 16/172 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSVFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
+DL+N FG +G + SA V+ D G+ ++ FGF++F + DA R A SLNG
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGDGK-SKGFGFVNFENADDAAR-AVESLNG 277
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ + G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGD-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E L+ F FGTV S +V+ D G T++ GF++FS+ E A+S + + +P
Sbjct: 332 EKLKEIFSPFGTVTSCKVMRDPNG-TSKGSGFVAFSTPEEATEAMS---QLSGKMIESKP 387
Query: 277 LF 278
L+
Sbjct: 388 LY 389
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
+ A A+ L G + + + V +I R A+
Sbjct: 364 AFSTPEEATEAMSQLSGKMIESKPLYV--AIAQRKEDRRAQ 402
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G+++F++ +DAA ++
Sbjct: 38 LYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTN--PQDAARAI- 94
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ + PL + + V +++ PS R G G
Sbjct: 95 -----QELNYIPL--YGKPIRVMYSHRDPSVRRSGAG 124
>gi|355691634|gb|EHH26819.1| hypothetical protein EGK_16888 [Macaca mulatta]
Length = 303
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL + D L E F FGT+LS +V+ + E G S+G G++ +A+
Sbjct: 124 RSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMD-EGGQSKGFGFVQYEKEEAAQ 182
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NAI +L+G + + + V + R + + K F + ++V NLS +
Sbjct: 183 NAIKSLNGMLINDKPVFVGPFLRKQERDHSFD------KTKF-----NNVFVKNLSESTT 231
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
EDL FG +G + SA V+ G+ +R FGFI+F + DA A LNG
Sbjct: 232 KEDLLKIFGEYGNITSAVVMIGMDGK-SRCFGFINFENPDAASRAVQELNG 281
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S S+L E+F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 42 LYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEVL 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + + +RV +S S R+ A +++ NL + + L
Sbjct: 102 NFAPLNNKPIRVMYSNRDPSSRRSGSA---------------NIFIKNLDKMIDNKSLHE 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FGT++S +V D GQ ++ FGF+ + +A ++A SLNG +
Sbjct: 147 TFSSFGTILSCKVAMDEGGQ-SKGFGFVQYEKEEAAQNAIKSLNGML 192
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S +LL++F +G + S V + G SR G++ + ++A A+ L
Sbjct: 221 VFVKNLSESTTKEDLLKIFGEYGNITSAVVMIGMD-GKSRCFGFINFENPDAASRAVQEL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + +E V + +M + R + L K Y+ + LY+ NL ++
Sbjct: 280 NGKKINDKEWYVGRAQKKSEREMELKRRFEQILKDAADK---YQGLN-LYLKNLDDSIGD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ LR F FG + S +V+ D+ G ++ GF++FS+ E AL+ +NG + ++ +
Sbjct: 336 DQLRELFSNFGKITSCKVMRDQNG-LSKGSGFVAFSTREEASQALTEMNGKM----ISGK 390
Query: 276 PLF 278
PL+
Sbjct: 391 PLY 393
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S +L E+F FG + S +V R+ + G+S+G G++ + A A+ +
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRD-QNGLSKGSGFVAFSTREEASQALTEM 382
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEA-------------LISPPKKIFVYESPHKLYVG 208
+G + G+ + V F+ R +A ++P ++ +P +L+ G
Sbjct: 383 NGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPAVPMTPTLAPRLPMYPPMAPQQLFYG 442
Query: 209 NLSWAVKP 216
A+ P
Sbjct: 443 QAPPAMIP 450
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G+S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGVSKGYGFVHFETEEAANKSIDRV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 253 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 312 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|426231021|ref|XP_004009550.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Ovis aries]
Length = 302
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|114601869|ref|XP_001169959.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Pan
troglodytes]
gi|397518219|ref|XP_003829292.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Pan
paniscus]
gi|410211572|gb|JAA03005.1| heterogeneous nuclear ribonucleoprotein A0 [Pan troglodytes]
gi|410249756|gb|JAA12845.1| heterogeneous nuclear ribonucleoprotein A0 [Pan troglodytes]
gi|410295930|gb|JAA26565.1| heterogeneous nuclear ribonucleoprotein A0 [Pan troglodytes]
gi|410346956|gb|JAA40716.1| heterogeneous nuclear ribonucleoprotein A0 [Pan troglodytes]
Length = 306
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|388453863|ref|NP_001253568.1| heterogeneous nuclear ribonucleoprotein A0 [Macaca mulatta]
gi|384944966|gb|AFI36088.1| heterogeneous nuclear ribonucleoprotein A0 [Macaca mulatta]
Length = 303
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|5803036|ref|NP_006796.1| heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|297676052|ref|XP_002815964.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Pongo
abelii]
gi|8134660|sp|Q13151.1|ROA0_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein A0;
Short=hnRNP A0
gi|773644|gb|AAA65094.1| heterogeneous ribonucleoprotein A0 [Homo sapiens]
gi|12654371|gb|AAH01008.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|13938287|gb|AAH07271.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|14424524|gb|AAH09284.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|15080451|gb|AAH11972.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|15278047|gb|AAH12980.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|17511973|gb|AAH18949.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|17939453|gb|AAH19271.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|20810403|gb|AAH28976.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|20987729|gb|AAH30249.1| Heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|48146089|emb|CAG33267.1| HNRPA0 [Homo sapiens]
gi|119582586|gb|EAW62182.1| heterogeneous nuclear ribonucleoprotein A0 [Homo sapiens]
gi|261861132|dbj|BAI47088.1| heterogeneous nuclear ribonucleoprotein A0 [synthetic construct]
Length = 305
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|417409570|gb|JAA51284.1| Putative rna-binding protein musashi/mrna cleavage and
polyadenylation factor i complex subunit hrp1, partial
[Desmodus rotundus]
Length = 309
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 12 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 71 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 118
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 119 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 178
Query: 278 FP 279
P
Sbjct: 179 VP 180
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A +YV N+ E E F GTV SV + R P+ G +G G++
Sbjct: 217 DSQLEE--TKAHFTNVYVKNIDLETTDEEFKEFFGKIGTVTSVALERGPD-GKLKGFGFV 273
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
N A A+ L+G++ +E+ V + R ++ + + K+ Y+ +
Sbjct: 274 NYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLEKMAKYQGVN- 332
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L+V NL ++ E L+ F FG + S +V+ G+ ++ FGF+ FSS E A++
Sbjct: 333 LFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRTENGK-SKGFGFVCFSSPEEATKAITEK 391
Query: 265 GTVESHTVAFQPLF 278
VA +PL+
Sbjct: 392 N---QQIVAGKPLY 402
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +++ + ETG S+G G++ ++A AI AL
Sbjct: 137 IFIKNLNQDIDNKALFDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEEESAANEAIDAL 195
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K F +YV N+ E+ +
Sbjct: 196 NGMLLNGQEIYVAPHLTRKER----DSQLEETKAHFT-----NVYVKNIDLETTDEEFKE 246
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+ GTV S + G+ + FGF+++ +DA + A LNG
Sbjct: 247 FFGKIGTVTSVALERGPDGK-LKGFGFVNYEDHNDAVK-AVEELNG 290
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L ++F P G+V S+ V R+ T S G Y+ + K AI L
Sbjct: 49 LYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAYVNFSDHEAGKQAIEKL 108
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + I ++ NL+ + + L +
Sbjct: 109 NYTPIKGKLCRIMWSQRDPSLRKKGHGNI---------------FIKNLNQDIDNKALFD 153
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F ++ + A+ +LNG +
Sbjct: 154 TFSVFGNILSSKIATDETGK-SKGFGFVHFEEESAANEAIDALNGML 199
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F PFG + SV+V R E G S+G G++ S
Sbjct: 323 EKMAKYQGVNLFVKNLDDSIDDEKLQEEFAPFGNITSVKVMRT-ENGKSKGFGFVCFSSP 381
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 382 EEATKAITEKNQQIVAGKPLYV 403
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 ---EKNQQIVAGKPLY 393
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V+++ ETG S+G G++ + +A +I +
Sbjct: 92 VFIKNLDKSIDNKALFDTFSAFGNILSCKVAQD-ETGASKGYGFVHFETEEAANKSIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+ + V I R E + K+F +YV N E L++
Sbjct: 151 NGMLLNGKMVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDFSDEMLKD 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F ++G + S +V++ G +R FGF++F DA A + LNG V +PL+
Sbjct: 202 MFEKYGRITSHKVMYKDDG-NSRGFGFVAFEDPDAAERACIELNG---KELVEGKPLY 255
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 18/184 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N F L +MF+ +G + S +V + G SRG G++ ++A+ A I L
Sbjct: 185 VYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYK-DDGNSRGFGFVAFEDPDAAERACIEL 243
Query: 162 DGSD-VGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G + V G+ + V + R R E L S +++ Y+ + LYV NL +
Sbjct: 244 NGKELVEGKPLYVGRAQKKAERQKELKRKFEQLKS--ERLTRYQGVN-LYVKNLDDTIDD 300
Query: 217 EDLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E LR F FGT+ SA+V L D + ++ FGF+ FSS E A++ +NG + V
Sbjct: 301 ERLRKEFAPFGTITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGT 353
Query: 275 QPLF 278
+PL+
Sbjct: 354 KPLY 357
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + L +
Sbjct: 64 NFDIIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALFD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA------ERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ E+ + LNG +
Sbjct: 109 TFSAFGNILSCKVAQDETG-ASKGYGFVHFETEEAANKSIEKVNGMLLNGKM 159
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 14/171 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL +S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 124 RSGAGNIFIKNLDKSIDHKALHDTFSVFGNIISCKVAVD-SSGQSKGYGFVQYETEESAQ 182
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A+ L+G + +++ V + R K IF +YV NL+ +
Sbjct: 183 KAMGQLNGMLLNDKQVYVGPFLRRQERDSTGN------KTIFT-----NVYVKNLAESTT 231
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
+DL+N FG FG + SA V+ D +G+ + FGF++F ++D A SLNG
Sbjct: 232 DDDLKNIFGEFGKITSAVVMKDGEGK-PKGFGFVNFENADDAAKAVESLNG 281
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F FG + S V ++ E G +G G++ + + A A+ +L
Sbjct: 221 VYVKNLAESTTDDDLKNIFGEFGKITSAVVMKDGE-GKPKGFGFVNFENADDAAKAVESL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + ++L K ++S + LYV NL +V
Sbjct: 280 NGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADK---FQSSN-LYVKNLDDSVSD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E L+ F +GTV S +V+ D G +R GF++FS+ E A+S + + +P
Sbjct: 336 EKLKELFTPYGTVTSCKVMRDPNG-MSRGSGFVAFSTPEEATKAMS---EMSGKMIENKP 391
Query: 277 LF 278
L+
Sbjct: 392 LY 393
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+V + S++E + + LYV NL S +L E+F P+GTV S +V R+P G+SRG
Sbjct: 305 KVQYEQSLKEAADKFQSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDP-NGMSRG 363
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G++ + A A+ + G + + + V + R +A S
Sbjct: 364 SGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFS 412
>gi|426350099|ref|XP_004042619.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0, partial
[Gorilla gorilla gorilla]
Length = 191
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 ---EKNQQIVAGKPLY 393
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 22/190 (11%)
Query: 84 VDDDSSVEEPRSRARPCE-----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+ DD S ++ E LYV +L S + L ++F P G+V S+ V R+ T
Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITK 76
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G Y+ + + AI L+ + + GR R+ +S S + I
Sbjct: 77 TSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNI-------- 128
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AER 257
++ NL + + L + F FG ++S+++ D G+ ++ FGF+ F + A +
Sbjct: 129 -------FIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAK 180
Query: 258 DAALSLNGTV 267
+A +LNG +
Sbjct: 181 EAIDALNGML 190
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|32879847|gb|AAP88754.1| heterogeneous nuclear ribonucleoprotein A0 [synthetic construct]
gi|60653987|gb|AAX29686.1| heterogeneous nuclear ribonucleoprotein A0 [synthetic construct]
Length = 306
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 ---EKNQQIVAGKPLY 393
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 ---EKNQQIVAGKPLY 393
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|119936162|gb|ABM06082.1| heterogeneous nuclear ribonucleoprotein A0 [Bos taurus]
gi|440909359|gb|ELR59272.1| Heterogeneous nuclear ribonucleoprotein A0, partial [Bos grunniens
mutus]
Length = 192
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|355694908|gb|AER99825.1| heteroproteinous nuclear ribonucleoprotein A0 [Mustela putorius
furo]
Length = 295
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|402872594|ref|XP_003900193.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Papio
anubis]
Length = 303
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|332234557|ref|XP_003266473.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Nomascus
leucogenys]
Length = 306
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +Y+ N D +L EMF+ +G + S +V + ETG +G G+++ +A+ A
Sbjct: 172 RFMNVYIKNFGDDLDDEKLREMFEKYGKITSAKVMAD-ETGKPKGFGFVSFEDPENAEKA 230
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVK 215
+ L+ ++ G+ + V + + R + K +I Y+ + LYV NL ++
Sbjct: 231 VNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQLKMDRINRYQGVN-LYVKNLDDSID 289
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
E LR F FGT+ SA+V+ D G+ ++ FGF+ FS+ E
Sbjct: 290 DERLRKEFTPFGTITSAKVMTDSNGR-SKGFGFVCFSAPEE 329
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 87/172 (50%), Gaps = 17/172 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D + + F FG +LS +V+ + E+ S+G G++ + +A NAI +
Sbjct: 83 VFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEESN-SKGYGFVHFETEEAANNAIQKV 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ V + + R E + + F+ +Y+ N + E LR
Sbjct: 142 NGMLLNGRKVFVGKFVPRSER----EKQLGQKARRFM-----NVYIKNFGDDLDDEKLRE 192
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS------LNGTV 267
F ++G + SA+V+ D G+ + FGF+SF + A++ LNG V
Sbjct: 193 MFEKYGKITSAKVMADETGK-PKGFGFVSFEDPENAEKAVNDLNNKELNGKV 243
>gi|410948433|ref|XP_003980944.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Felis catus]
Length = 250
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 97 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 153
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 154 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 211
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 212 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 269
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 270 ---EKNQQIVAGKPLY 282
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 76 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +FG +VSA + D G+ + FGF+++
Sbjct: 127 LFAKFGPIVSASLEKDADGK-LKGFGFVNYEK 157
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 203 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 261
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 262 EEATKAITEKNQQIVAGKPLYV 283
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 79/152 (51%), Gaps = 13/152 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ +P +G S+G G++ S +A+ AI L
Sbjct: 115 IFIKNLDKAIDHKALHDTFSVFGNILSCKVATDP-SGQSKGYGFVQFDSEEAAQKAIEKL 173
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E + K F + ++V NLS EDL
Sbjct: 174 NGMLLNDKQVYV------GPFLRKQERDTATDKTRF-----NNVFVKNLSETTAEEDLNK 222
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
FG FGT+ S V+ D G+ +R FGF++F +
Sbjct: 223 AFGEFGTITSVVVMRDGDGK-SRCFGFVNFEN 253
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 16/189 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL + +L + F FGT+ SV V R+ + G SR G++ + + A
Sbjct: 200 KTRFNNVFVKNLSETTAEEDLNKAFGEFGTITSVVVMRDGD-GKSRCFGFVNFENADDAA 258
Query: 156 NAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
A AL+G +E V ++ ++ + R +++ K LY+ NL
Sbjct: 259 KAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKF----QGANLYIKNL 314
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTVES 269
++ E ++ F FGT+ S +V+ D G +R GF++FS+ E A L +NG +
Sbjct: 315 DDSIGDEKIKELFSPFGTITSCKVMRDPNG-ISRGSGFVAFSTPEEASRALLEMNGKM-- 371
Query: 270 HTVAFQPLF 278
VA +PL+
Sbjct: 372 --VASKPLY 378
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S ++ E+F PFGT+ S +V R+P GISRG G++
Sbjct: 294 EQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDP-NGISRGSGFV 352
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
+ A A++ ++G V + + V +
Sbjct: 353 AFSTPEEASRALLEMNGKMVASKPLYVALA 382
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++S+ +DAA +L
Sbjct: 27 LYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSN--PQDAARAL- 83
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F P+ + V +++ PS R G G
Sbjct: 84 -----EVLNFTPV--NGSPIRVMYSHRDPSVRKSGAG 113
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 90/180 (50%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F+ +G + S V R+ E G S+ G++ + A A+ AL
Sbjct: 205 VYVKNLADSTTDDELKKVFEAYGPISSAVVMRDNE-GKSKCFGFVNFEHADDAAKAVEAL 263
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNLSWAVKPEDL 219
+G +E V + + R A +K I Y+ + LY+ NL + E L
Sbjct: 264 NGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVN-LYLKNLDDTIDDEKL 322
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
R F +GT+VS +V+ D +GQ +R GF++FSS D A +NG + V +PL+
Sbjct: 323 REIFSEYGTIVSCKVMRDPQGQ-SRGSGFVAFSSPDEATRAVTEMNGKM----VGSKPLY 377
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FGT+LS +V+ +P +G S+G G++ SA+ AI
Sbjct: 112 ANIFIKNLDKSIDNKALHDTFAAFGTILSCKVATDP-SGQSKGYGFVQFEQEESAQTAIE 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++G + +++ V + R ++ V + +YV NL+ + ++L
Sbjct: 171 KVNGMLLNDKQVFVGPFVRRQERDQSG-----------VVSKFNNVYVKNLADSTTDDEL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
+ F +G + SA V+ D +G+ ++ FGF++F +D A +LNG
Sbjct: 220 KKVFEAYGPISSAVVMRDNEGK-SKCFGFVNFEHADDAAKAVEALNG 265
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + ++L E+F G V+S+ V R+ T S G Y+ + A A+ L
Sbjct: 26 LYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRALELL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ FS S ++ A +++ NL ++ + L +
Sbjct: 86 NFNAVNGKPIRIMFSHRDPSIRKSGTA---------------NIFIKNLDKSIDNKALHD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D GQ ++ +GF+ F + A+ +NG + + F
Sbjct: 131 TFAAFGTILSCKVATDPSGQ-SKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVF 183
>gi|431892627|gb|ELK03060.1| Heterogeneous nuclear ribonucleoprotein A0 [Pteropus alecto]
Length = 307
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|73970814|ref|XP_538645.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 isoform 1
[Canis lupus familiaris]
Length = 310
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|344264962|ref|XP_003404558.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Loxodonta africana]
Length = 307
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|311250199|ref|XP_003124018.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like [Sus
scrofa]
Length = 302
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + + G SRG G++ ++A+ A++ L
Sbjct: 194 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVM-SKDDGKSRGFGFVAFEDPDAAEQAVLEL 252
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G D+ G+ M V + R + + K ++ Y+ + LYV NL + E
Sbjct: 253 NGKDISEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-LYVKNLDDTIDDER 311
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS E A++ +NG + V +PL
Sbjct: 312 LRKEFTPFGTITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRI----VGSKPL 365
Query: 278 F 278
+
Sbjct: 366 Y 366
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G S+G G++ + +A +I +
Sbjct: 101 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQD-ESGASKGYGFVHFETEEAANKSIDKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + + L+
Sbjct: 160 NGMLLNGKKVYVGKFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDMTDDKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F DA A L LNG
Sbjct: 211 MFEKYGTITSHKVMSKDDGK-SRGFGFVAFEDPDAAEQAVLELNG 254
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG +
Sbjct: 118 TFSAFGNILSCKVAQDESG-ASKGYGFVHFETEEAANKSIDKVNGML 163
>gi|119895504|ref|XP_593096.3| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Bos taurus]
gi|297477251|ref|XP_002689241.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Bos taurus]
gi|296485329|tpg|DAA27444.1| TPA: heterogeneous nuclear ribonucleoprotein A0 [Bos taurus]
Length = 305
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|1911429|gb|AAB50657.1| A0=heterogeneous nuclear ribonucleoprotein [human, placenta,
Peptide, 305 aa]
Length = 305
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 87/185 (47%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFETFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L +F FG VLSV+V + E G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV---RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ + V + +D + + ++ + I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIR-YQGIN-LYVKNLDDGIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
L+ F FGT+ S +V+ + G ++ FGF+ FSS E A+S +NG + VA +PL
Sbjct: 310 LQKEFSPFGTITSTKVMTE--GGRSKGFGFVCFSSPEEATKAVSEMNGRI----VATKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V + E G S+G G++ + +A+ AI +
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGHGFVHFETEEAAERAIEKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R++ F SR + EA + K F +Y+ N + + L
Sbjct: 159 NGMLLNDRKV---FVGQFKSR-KEREAELGTRTKEFT-----NVYIKNFGDRMDDKTLNG 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FGRFG V+S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGRFGQVLSVKVMTDEGGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + D +E R R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLQKEFSPFGTITSTKVMT--EGGRSKGFGFVCFSSPEEATKAVSEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G + A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ +++ NL+ + + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRRSGVG---------------NVFIKNLNKTIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ GF+ F ++ + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGHGFVHFETEEAAERAIEKMNGML 162
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLDTKVTNEEFRE 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
FG++G + SA + HD + +R FGF++F
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNF 284
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV NL E E+F +G + S ++ + ETG SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNLDTKVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVY 199
++ SA A+ L+ + G+++ V + + R ++ A + +K Y
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARV---EKASKY 337
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ + LYV NL+ + E LR+ F FG + SARV+ D
Sbjct: 338 QGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD 374
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 69 VEDEING---KDNVGGNEVDDDSSVEEPRSRA------RPCELYVCNLPRSFDISELLEM 119
VE NG NV + D S E P S A LYV L S + L E+
Sbjct: 17 VESSTNGTTVNTNVANDAAGDGS--ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFEL 74
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F G V S+ V R+ T S G Y+ + + A+ L+ + + G+ R+ +S
Sbjct: 75 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRD 134
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + + +++ NL A+ + L + F FG ++S +V D
Sbjct: 135 PALRKTGQG---------------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF 179
Query: 240 GQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
G ++ +GF+ + +++A +A +NG + + F
Sbjct: 180 G-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVF 214
>gi|168053751|ref|XP_001779298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669310|gb|EDQ55900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 9/166 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ V +P +++ E F+ GT+ ++ P+TG +G ++T + +AK A +A
Sbjct: 1 KVMVGGMPYYITENDIHEFFQECGTIAELDCMTFPDTGKFKGIAFITFRTEEAAKRA-MA 59
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL--YVGNLSWAVKPED 218
LD +D+GGR +++ N PPKK P L Y+GNLS+ + ++
Sbjct: 60 LDAADMGGRFLKIEMCKIKPLEVGNKPLFKEPPKK-----QPGCLAAYIGNLSYDITEKE 114
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
+R F + + S R +++ R FG I F+ D +AA+ L+
Sbjct: 115 VRRFF-KGCKIESVRFAENKETGEFRGFGHIDFADDESLEAAMKLD 159
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 100/196 (51%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ ++F P+G + S+ + ++ + G S+G G
Sbjct: 219 DRESKFEE--MKANFTNIYVKNIDLNYSEESFEKLFAPYGKITSIYLEKD-QDGKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 276 FVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAARLEKLAKYQGV 335
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL A+ E L F FGT+ SA+V+ D G+ ++ FGF+ F++ E A++
Sbjct: 336 N-LFVKNLDDAIDSEKLEEEFKSFGTITSAKVMVDDAGK-SKGFGFVCFTTPEEATKAIT 393
Query: 263 LNGTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 394 ---EMNTRMINGKPLY 406
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 87 DSSVEEPRSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
D S EE + E LYV L S + + L E+F P G V S+ V R+ + S G
Sbjct: 34 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 93
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+ + AI L+ + + GR R+ +S S R+ + I
Sbjct: 94 YAYVNYHKYEDGEKAIEELNYTPIEGRPCRIMWSQRDPSARRSGDGNI------------ 141
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
++ NL A+ + L + F FG ++S +V D GQ ++ FGF+ +
Sbjct: 142 ---FIKNLHPAIDNKALHDTFSAFGKILSCKVAADEFGQ-SKCFGFVHY 186
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
I+GK G V V P A+ LY+ NL L E F FG + S+ +S
Sbjct: 185 IDGKQIYAGKFVRKTDRVL-PNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVIS 243
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
++ E G+SRG G++ S AK A+ AL+G +G + + V + R +
Sbjct: 244 KD-ENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEE 302
Query: 193 PK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
+ +I Y + +YV N+ V +DLR HF G + SA+++ D+KG ++ FGF+
Sbjct: 303 KRNEQILKYRGSN-VYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKG-ISKGFGFVC 360
Query: 251 FSSDAERDAALSLNGTVESHTVAFQPLF 278
FS+ E A++ T + +PL+
Sbjct: 361 FSTPDEASKAVN---TFHGYMFHRKPLY 385
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 100 CELY--VC-NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
ELY VC NL S D L MF+ FG +LS +V E G S+G G++ S A
Sbjct: 117 AELYFLVCLNLSDSIDNVRLQAMFQKFGNILSCKVVVT-EDGKSKGYGFVQFESEEYANA 175
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
AI L+G + G++ I R + ++ P + LY+ NL V
Sbjct: 176 AIEKLNGFIIDGKQ------IYAGKFVRKTDRVLPNPDAKYT-----NLYIKNLDPDVTE 224
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
E LR F FG + S + D G +R FGF++F S + AL +LNG
Sbjct: 225 EALREKFFEFGKIASLVISKDENG-MSRGFGFVNFESPEDAKRALEALNG 273
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 27/290 (9%)
Query: 7 FLTTSSSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVD--- 63
F+ S +L + I+ T R T T+ + + SC + AG V
Sbjct: 74 FIQLSVNLASAISSSKTWTRLSTTKCCTIPFSAFGNILSCKVNVNLAGESKGYGFVHFET 133
Query: 64 EEAVVVEDE------INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISEL 116
EEA V E +N K G V E RA+ +++ NLP +D ++L
Sbjct: 134 EEAAVKAIEKLDGMLMNDKKVFVGRFKSRGERVREYGDRAKQFTNVFIKNLPAEWDDAKL 193
Query: 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F G+V+SV ++ + E G SR G+++ + A+ + L + G+++ V +
Sbjct: 194 TEVFGEHGSVMSVALATD-ENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRA 252
Query: 177 IDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVS 231
R AE + K +E + LYV NL ++ + LR HF +G + S
Sbjct: 253 --QKKAERQAELKVKFEK--LKHERNQRYQGVNLYVKNLDDSITDDILREHFAPYGNITS 308
Query: 232 ARVLHDR--KGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
++V+ D +G ++ FGF+ F+S E A++ +NG + +A +PL+
Sbjct: 309 SKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRI----IASKPLY 354
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ NSA+ A++ L
Sbjct: 216 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPNSAEQAVLDL 274
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+ M V + R + + K ++ Y+ + LYV NL + E
Sbjct: 275 NGKEIAEGKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVN-LYVKNLDDTIDDER 333
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS E A++ +NG + V +PL
Sbjct: 334 LRKEFTPFGTITSAKVMMEEG--RSKGFGFVCFSQPEEATKAVTEMNGRI----VGSKPL 387
Query: 278 F 278
+
Sbjct: 388 Y 388
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E+G S+G G++ + +A +I +
Sbjct: 123 VFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQD-ESGASKGYGFVHFETEEAANKSIEKV 181
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R + + K+F +YV N + + L+
Sbjct: 182 NGMLLNGKKVYVGKFIPRKERQKE----LGEKAKLFT-----NVYVKNFGEDMTDDKLKE 232
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++GT+ S +V+ G+ +R FGF++F ++ A L LNG
Sbjct: 233 MFEKYGTITSHKVMIKDDGK-SRGFGFVAFEDPNSAEQAVLDLNG 276
>gi|380792859|gb|AFE68305.1| heterogeneous nuclear ribonucleoprotein A0, partial [Macaca
mulatta]
Length = 229
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLDTEVTNEEFRE 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
FG++G + SA + HD + +R FGF++F
Sbjct: 255 LFGKYGDITSASITHDSETGKSRGFGFVNF 284
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV NL E E+F +G + S ++ + ETG SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNLDTEVTNEEFRELFGKYGDITSASITHDSETGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVY 199
++ SA A+ L+ + G+++ V + + R ++ A + +K Y
Sbjct: 281 FVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQHEAARV---EKASKY 337
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ + LYV NL+ + E LR+ F FG + SARV+ D
Sbjct: 338 QGVN-LYVKNLTDDIDDEKLRDLFIGFGNITSARVMRD 374
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 69 VEDEING---KDNVGGNEVDDDSSVEEPRSRA------RPCELYVCNLPRSFDISELLEM 119
VE NG NV + D S E P S A LYV L S + L E+
Sbjct: 17 VESSTNGTTVNTNVANDAAGDGS--ETPNSAAPSTTQPHSASLYVGELDSSVTEAMLFEL 74
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F G V S+ V R+ T S G Y+ + + A+ L+ + + G+ R+ +S
Sbjct: 75 FSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRD 134
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + + +++ NL A+ + L + F FG ++S +V D
Sbjct: 135 PALRKTGQG---------------NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF 179
Query: 240 GQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
G ++ +GF+ + +++A +A +NG + + F
Sbjct: 180 G-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVF 214
>gi|224009309|ref|XP_002293613.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971013|gb|EED89349.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 189
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 22/179 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L + K G VL ++ + + G S+GCG + S A A+ L
Sbjct: 2 VYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHD-GRSKGCGIVEYSSPEEAARAVEEL 60
Query: 162 DGSDVGGREMRVRFSIDM--------------NSRTRNAEALISPPKKIFVYESPHKLYV 207
+ S++ GR++ VR + N R+ N + P E +L+V
Sbjct: 61 NNSELSGRQIFVREDREQTTGSNNRHGGGGFNNQRSHNTSYMQGSPA-----EEGCQLFV 115
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
GNLSW +L++HF + G V A V G+ R FG + F S + AA+ LNG
Sbjct: 116 GNLSWETGWRELKDHFRQCGEVDRAEVAEGNDGR-KRGFGLVRFHSAKDAQAAIRKLNG 173
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L+V NL EL + F+ G V EV+ + G RG G + S A+ AI
Sbjct: 111 CQLFVGNLSWETGWRELKDHFRQCGEVDRAEVAEGND-GRKRGFGLVRFHSAKDAQAAIR 169
Query: 160 ALDGSDVGGREMRVR 174
L+G D GR + VR
Sbjct: 170 KLNGVDFMGRPLDVR 184
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
++YVGNLSW+ DL++H G V+ A ++ G+ ++ G + +SS E
Sbjct: 1 RVYVGNLSWSTGWRDLKDHMKACGDVLRADIMQTHDGR-SKGCGIVEYSSPEE 52
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+P E E+F+ FG V S ++R+ E+G SRG G
Sbjct: 229 DRQSKFEE--MKANFTNIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKSRGFG 286
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ + A A+ L+G D G+++ V + + R R+ EA +K Y+
Sbjct: 287 FVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSYEAARM--EKASKYQ 344
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
+ LYV NL + E LR F FG + SA+V+ D +T
Sbjct: 345 GVN-LYVKNLDDEIDDEKLRELFAPFGAITSAKVMRDTPAETA 386
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 30/188 (15%)
Query: 84 VDDDSSVEEPRS---RARPCEL-----------------YVCNLPRSFDISELLEMFKPF 123
VD + ++EE + RPC + ++ NL + D L + F F
Sbjct: 113 VDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQGNVFIKNLDVAIDNKALHDTFAAF 172
Query: 124 GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183
G +LS +V+++ E+G S+G G++ + +A AI ++G + +++ V I R
Sbjct: 173 GNILSCKVAQD-ESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQ 231
Query: 184 RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTT 243
E + K F +YV N+ E+ R F +FG V SA + D + +
Sbjct: 232 SKFEEM----KANFT-----NIYVKNIPVEATEEEFRELFEKFGDVTSASLARDTESGKS 282
Query: 244 RVFGFISF 251
R FGF++F
Sbjct: 283 RGFGFVNF 290
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 20/197 (10%)
Query: 82 NEVDDDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
N D D++ P + P LYV L S + L E+F G+V S+ V R+ T
Sbjct: 40 NSEDQDAAGPTPTNAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAITR 99
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G Y+ + + A+ L+ + + GR R+ +S + +N +
Sbjct: 100 RSLGYAYVNYNTTVDGEKALEELNYTLIKGRPCRIMWSQRDPALRKNGQG---------- 149
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AER 257
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A
Sbjct: 150 -----NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAAA 203
Query: 258 DAALSLNGTVESHTVAF 274
A +NG + + F
Sbjct: 204 QAIKHVNGMLLNEKKVF 220
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V + +G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTD-SSGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS D A +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPDEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSV--------EEPRSRARPCELYVCNL 107
E+A +E+NGKD G +V+ + + +E SR + LY+ NL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L + F PFG++ S +V E G S+G G++ S + A A+ ++G VG
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPDEATKAVTEMNGRIVG 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 SKPLYVALAQRKEER 374
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D +G+ +R FGF++FS+ AA+
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAV 280
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTV 267
+A +A +NG +
Sbjct: 181 EAANNAIKHVNGML 194
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 69.3 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 13/211 (6%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
+NGK G V + +E +A+ +Y+ N+ + + EL EMFK +GT+ S +V
Sbjct: 469 LNGKKVFVGRFVGRNDREKELGQQAKLYTNVYIKNIDENVNEKELFEMFKKYGTITSCKV 528
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-GGREMRVRFSIDMNSRTRNAEALI 190
+ G SRG G++ A+ A+ L G G+ V + R + +
Sbjct: 529 MFK-DDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKF 587
Query: 191 SPPK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGF 248
K +I Y+ + LYV NL + E LR F FGT+ SA+V+ D ++ FGF
Sbjct: 588 EQYKIERINRYQGVN-LYVKNLDDTIDDERLRREFSAFGTIKSAKVMMD--DGRSKGFGF 644
Query: 249 ISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ FSS E A++ +NG + V +PL+
Sbjct: 645 VYFSSPEEATKAVTDMNGRI----VGTKPLY 671
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 10/127 (7%)
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
ETG S+G G++ + SA +I ++G + G+++ V + N R E + K
Sbjct: 439 ETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDR----EKELGQQAK 494
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
++ +Y+ N+ V ++L F ++GT+ S +V+ G ++R FGF++F
Sbjct: 495 LYT-----NVYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDG-SSRGFGFVAFEDPK 548
Query: 256 ERDAALS 262
E + A++
Sbjct: 549 EAEKAVT 555
>gi|58258845|ref|XP_566835.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57222972|gb|AAW41016.1| single-stranded DNA binding protein, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 441
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 195 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAI-EK 253
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 254 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 305
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG
Sbjct: 306 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNG 356
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE I+P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 165 NGNKRKAEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 224
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ DR Q +R FG++ F+ A+ +G+
Sbjct: 225 VFDRDSQKSRGFGYVEFADLESSAKAIEKDGS 256
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 291 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAA 350
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 351 LKAMNGAEIAGRAIRVDFA 369
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D +G+ +R FGF++FS+ AA+
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAV 280
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTV 267
+A +A +NG +
Sbjct: 181 EAANNAIKHVNGML 194
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
A A+ AL+ S++ G ++ V + N R + + K+ Y+ +
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVN- 323
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT-- 380
Query: 265 GTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 -EKNQQIVAGKPLY 393
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 147 VFIKNLDPSIDNKALYETFSAFGTILSCKVAMD-AVGRSKGYGFVQFEKEETAQAAIDKL 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R+R+ + P+ VY V NL + ++L+
Sbjct: 206 NGMLLNDKQVFVGHFVRRQDRSRSESGAV--PRFTNVY-------VKNLPKEITDDELKK 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG++G + SA V+ D+ G +R FGF++F S +A A +NG
Sbjct: 257 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFESPEAAAVAVEKMNG 300
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 42/238 (17%)
Query: 63 DEEAVVVEDEING---KDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISEL 116
+E A D++NG D VG D S E + R +YV NLP+ EL
Sbjct: 195 EETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRSRSESGAVPRFTNVYVKNLPKEITDDEL 254
Query: 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG------GR- 169
+ F +G + S V ++ ++G SR G++ S +A A+ ++G +G GR
Sbjct: 255 KKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRA 313
Query: 170 --------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
E+R +F + SR + LY+ NL +V E L+
Sbjct: 314 QKKSEREEELRRKFEQERISRFEKLQG--------------SNLYLKNLDDSVNDEKLKE 359
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F +G V S +V+ + +G +R FGF+++SS E ALS +NG + + +PL+
Sbjct: 360 MFSEYGNVTSCKVMMNSQG-LSRGFGFVAYSSPEEASRALSEMNGKM----IGRKPLY 412
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ S A A+ +
Sbjct: 343 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSSPEEASRALSEM 401
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V F+ R + + L +
Sbjct: 402 NGKMIGRKPLYVAFAQRKEERRAHLQTLFT 431
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D +G+ +R FGF++FS+ AA+
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAV 280
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTV 267
+A +A +NG +
Sbjct: 181 EAANNAIKHVNGML 194
>gi|392354145|ref|XP_003751688.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like [Rattus
norvegicus]
Length = 307
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FG V A ++ D++ R FGF+ F S DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|226443091|ref|NP_084148.1| heterogeneous nuclear ribonucleoprotein A0 [Mus musculus]
gi|81916834|sp|Q9CX86.1|ROA0_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein A0;
Short=hnRNP A0
gi|12859567|dbj|BAB31694.1| unnamed protein product [Mus musculus]
Length = 305
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FG V A ++ D++ R FGF+ F S DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
>gi|195395310|ref|XP_002056279.1| GJ10859 [Drosophila virilis]
gi|194142988|gb|EDW59391.1| GJ10859 [Drosophila virilis]
Length = 388
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 88/204 (43%), Gaps = 19/204 (9%)
Query: 74 NGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSR 133
N KD V + + SS L V LP EL +F FG + V++ R
Sbjct: 3 NIKDEVFADYMATASSSPAEDQTGETTNLLVNYLPFDMLEGELYALFVSFGHIKHVKIIR 62
Query: 134 NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPP 193
+ ETG S G++ + +A A + L+G V G+ ++V + + RNA
Sbjct: 63 DAETGASHCYGFVNFSAAGNANLAQVCLNGRQVRGKRLKVSPARPSSMDIRNA------- 115
Query: 194 KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
K+YV NL + +R FGR+G ++ VL DR +R F+ F
Sbjct: 116 ----------KVYVANLPIDYNEQKVRATFGRYGNILDLNVLKDRFTGLSRGIAFVRFDL 165
Query: 254 DAERDAALS-LNG-TVESHTVAFQ 275
+ D A+S +NG T+E + Q
Sbjct: 166 KSSADMAISVMNGYTLEGGSFPLQ 189
>gi|134106861|ref|XP_777972.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260672|gb|EAL23325.1| hypothetical protein CNBA4410 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 444
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLESSAKAI-EK 256
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 257 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 308
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG
Sbjct: 309 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAALKAMNG 359
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE I+P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 168 NGNKRKAEEESIAPAKKARADGGDEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 227
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ DR Q +R FG++ F+ A+ +G+
Sbjct: 228 VFDRDSQKSRGFGYVEFADLESSAKAIEKDGS 259
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 294 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDASAA 353
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 354 LKAMNGAEIAGRAIRVDFA 372
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ + +G S+G G++ +A+ AI
Sbjct: 128 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATD-ASGESKGYGFVQYERDEAAQAAID 186
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V I R E SP + F + +YV NLS +DL
Sbjct: 187 KLNGMLMNDKKVYVGPFI------RKQERDNSPGQVKF-----NNVYVKNLSENTTEDDL 235
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+ FG+FGT+ SA V+ + G+ ++ FGF++F S D A LNG
Sbjct: 236 KEIFGKFGTITSAVVMREGDGR-SKCFGFVNFESPDDAAQAVQELNG 281
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FGT+ S V R + G S+ G++ S + A A+ L
Sbjct: 221 VYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGD-GRSKCFGFVNFESPDDAAQAVQEL 279
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + + L K Y++ + LY+ NL +V
Sbjct: 280 NGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK---YQNTN-LYLKNLDDSVDD 335
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
+ LR F +GT+ S +V+ D G +R GF++F S + AL+ + S V +P
Sbjct: 336 DKLRELFAEYGTITSCKVMRDSNG-VSRGSGFVAFKSAEDASRALA---EMNSKMVGSKP 391
Query: 277 LF 278
L+
Sbjct: 392 LY 393
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ T S G Y+ S A A+ L
Sbjct: 42 LYVGDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEML 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +R+ +S S ++ A I ++ NL ++ + L +
Sbjct: 102 NFTPINGKPIRIMYSNRDPSLRKSGTANI---------------FIKNLDKSIDNKALYD 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG +
Sbjct: 147 TFCVFGNILSCKVATDASGE-SKGYGFVQYERDEAAQAAIDKLNGML 192
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LY+ NL S D +L E+F +GT+ S +V R+ G+SRG G++
Sbjct: 309 EKNLQEAADKYQNTNLYLKNLDDSVDDDKLRELFAEYGTITSCKVMRD-SNGVSRGSGFV 367
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++ VG + + V + R +A S
Sbjct: 368 AFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFS 412
>gi|320591904|gb|EFX04343.1| nucleolin protein [Grosmannia clavigera kw1407]
Length = 413
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL + D S L + FK F + V + ET SRG GY+ S+ A+ A +
Sbjct: 168 LFVGNLSWNVDDSVLYDEFKGFDGLTGARVITDRETQRSRGFGYVEFDSVEHAQAAFDKM 227
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDL 219
G + GRE+++ FS +++ +A S KK SP L+VGNLS+ E +
Sbjct: 228 TGYFLDGRELKIDFST-GRAKSNDANPAASRAKKYGDVTSPESDTLFVGNLSFDADEETV 286
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F V S R+ D + + FG++SF S + + A +LNG
Sbjct: 287 SAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLEDSKKAFDTLNG 333
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
E+ L+VGNLSW V L + F F + ARV+ DR+ Q +R FG++ F S
Sbjct: 163 ETSSTLFVGNLSWNVDDSVLYDEFKGFDGLTGARVITDRETQRSRGFGYVEFDS 216
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL SFD E + F V S+ + + E+G +G GY++ S+ +K A
Sbjct: 272 LFVGNL--SFDADEETVSAFFSEVANVKSLRLPTDMESGRPKGFGYVSFYSLEDSKKAFD 329
Query: 160 ALDGSDVGGREMRVRFSI 177
L+G GR +R+ +S
Sbjct: 330 TLNGQSCAGRNVRLDYST 347
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 10/194 (5%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE S+A +YV N+ E E+F +G VLS + + E G +G G++
Sbjct: 210 DSQLEE--SKANFTNIYVKNINLETTDEEFTELFSKYGKVLSAALEKT-EDGKLKGFGFV 266
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHK 204
+ A A+ L+GS +E+ V + R + + + K+ Y+ +
Sbjct: 267 DFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASRLEKMAKYQGVN- 325
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
L++ NL ++ E L+ F +G + S RV+ G++ R FGF+ FS+ E A++
Sbjct: 326 LFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRTENGKS-RGFGFVCFSTPEEATKAITEK 384
Query: 265 GTVESHTVAFQPLF 278
VA +PL+
Sbjct: 385 N---QQIVAGKPLY 395
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + K AI L
Sbjct: 42 LYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIEKL 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + A I ++ NL + + L +
Sbjct: 102 NYTPIKGRLCRIMWSQRDPALRKKGSANI---------------FIKNLHSDIDNKALYD 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F D A ++A +LNG +
Sbjct: 147 TFSVFGNILSSKIATDETGK-SKGFGFVHFEDDTAAKEAIDALNGML 192
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 12/168 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL D L + F FG +LS +++ + ETG S+G G++ +AK AI
Sbjct: 128 ANIFIKNLHSDIDNKALYDTFSVFGNILSSKIATD-ETGKSKGFGFVHFEDDTAAKEAID 186
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
AL+G + G+E+ V + R ++ + K F +YV N++ E+
Sbjct: 187 ALNGMLLNGQEIFVGPHLSRKER----DSQLEESKANFT-----NIYVKNINLETTDEEF 237
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
F ++G V+SA + G+ + FGF+ F + + A+ LNG+
Sbjct: 238 TELFSKYGKVLSAALEKTEDGK-LKGFGFVDFENHEDAAKAVEELNGS 284
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L++ NL S D +L E F P+G + SV V R E G SRG G++ +
Sbjct: 316 EKMAKYQGVNLFIKNLDDSIDDEKLKEEFAPYGNITSVRVMRT-ENGKSRGFGFVCFSTP 374
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 375 EEATKAITEKNQQIVAGKPLYV 396
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N++ V ED R
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNIAPDVTDEDFRQ 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F +FG V S+ + D++G+ TR FGF++F++ +A A LNG
Sbjct: 259 LFEKFGDVTSSSLARDQEGK-TRGFGFVNFTTHEAAFKAVEELNG 302
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 95/220 (43%), Gaps = 28/220 (12%)
Query: 60 AVVDEEAVVVED-EINGKDNVGGNEVD-------DDSSVEEPRSRARP---CELYVCNLP 108
A VD+ A + + +NG +V +D +D+S P + P LYV L
Sbjct: 8 AAVDQLASDLNNTSLNGSGDVKAPAIDTSVSAGAEDASAPTPTAAPHPQNSASLYVGELD 67
Query: 109 RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168
S + L E+F G V S+ V R+ T S G Y+ S + A+ L+ + + G
Sbjct: 68 PSVTEAMLFELFSQIGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTLIKG 127
Query: 169 REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228
R R+ +S + + + +++ NL A+ + L + F FG
Sbjct: 128 RPCRIMWSQRDPALRKTGQG---------------NVFIKNLDVAIDNKALHDTFAAFGN 172
Query: 229 VVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
++S +V D G ++ +GF+ + +D A A +NG +
Sbjct: 173 ILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGML 211
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + ++F+ FG V S ++R+ E G +RG G
Sbjct: 227 DRQSKFEE--MKANFTNVYVKNIAPDVTDEDFRQLFEKFGDVTSSSLARDQE-GKTRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +A A+ L+G D G+++ V + + R + K Y+
Sbjct: 284 FVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD--RKGQTTRVFGFISFSSDAERDAA 260
+ LY+ NL V E LR F FG + SA+V+ D ++G+ + D E+D
Sbjct: 344 N-LYIKNLDDDVDDEKLRQMFAEFGPITSAKVMRDVPQEGEEE--------AKDQEKDKE 394
Query: 261 LSLNGTVESHTV 272
G E +
Sbjct: 395 NQKEGEKEGESA 406
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 18/196 (9%)
Query: 90 VEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
+ P+ + ++V NLP EL +M FG V S V ++ E G S+G G++
Sbjct: 191 ADRPQGKDVYTNVFVKNLPAELGDDELSKMATEFGEVTSAVVMKD-EKGSSKGFGFINFK 249
Query: 150 SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI------SPPKKIFVYESPH 203
A + AL+ ++GG+ V ++ +T EA++ S ++ Y+
Sbjct: 250 DAECAAKCVEALNDKEIGGK---VLYAGRAQKKTER-EAMLRQKVEESKQERYLKYQG-M 304
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
LYV NL+ V + LR+ F GT+ S +V+ D G+ ++ FGF+ F+S E A++
Sbjct: 305 NLYVKNLADEVDDDALRDLFTSCGTITSCKVMKDTSGK-SKGFGFVCFTSHDEATRAVTE 363
Query: 263 LNGTVESHTVAFQPLF 278
+NG + V +PL+
Sbjct: 364 MNGKM----VKGKPLY 375
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI---NSAKNAI 158
LYV +L + ++L E+F G V S+ V R+ T S G Y+ S +A+ A+
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + G+ MR+ +S R+ A S IF+ NL ++ +
Sbjct: 83 ETLNYHVLNGKPMRIMWS------HRDPSARKSGVGNIFIK---------NLDKSIDAKA 127
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
L + F FG ++S +V D G ++ +GF+ F A D A+
Sbjct: 128 LHDTFSAFGKILSCKVATDANG-VSKGYGFVHFEDQAAADRAIQ 170
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E + + LYV NL D L ++F GT+ S +V ++ +G S+G G++
Sbjct: 291 EESKQERYLKYQGMNLYVKNLADEVDDDALRDLFTSCGTITSCKVMKD-TSGKSKGFGFV 349
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
S + A A+ ++G V G+ + V + + R EA
Sbjct: 350 CFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEA 391
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L F G V S RV D + + + +++++S + AA
Sbjct: 23 LYVGDLEKDVTEAQLFELFSSVGPVASIRVCRDAVTRRSLGYAYVNYNSALDPQAAERAM 82
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
T+ H + +P + + +++ PS R GVG
Sbjct: 83 ETLNYHVLNGKP-------MRIMWSHRDPSARKSGVG 112
>gi|321461546|gb|EFX72577.1| hypothetical protein DAPPUDRAFT_326142 [Daphnia pulex]
Length = 229
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 18/193 (9%)
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
G D GG V + V P A +L+V +PR+ + ++L MF+ FG + + V ++
Sbjct: 12 GLDGGGGRRVHCECEVI-PLKNAEAIKLFVGQIPRNLEEADLRPMFEEFGKIYELTVLKD 70
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
TG+ +GC +LT + SA NA AL E R ++ + + A++
Sbjct: 71 KLTGMHKGCAFLTYCTRESAINAQNAL-------HEKRTLPGMNRPIQVKPADSDNRGED 123
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
+ KL+VG LS ED+R F +GT+ +L GQ ++ F+ FS+
Sbjct: 124 R--------KLFVGMLSKQQTDEDVRQLFLPYGTIEECTILRGPDGQ-SKGCAFVKFSTH 174
Query: 255 AERDAAL-SLNGT 266
AE A+ SL+G+
Sbjct: 175 AEAQTAINSLHGS 187
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R +L+V L + ++ ++F P+GT+ + R P+ G S+GC ++ + A
Sbjct: 119 NRGEDRKLFVGMLSKQQTDEDVRQLFLPYGTIEECTILRGPD-GQSKGCAFVKFSTHAEA 177
Query: 155 KNAIIALDGSDV 166
+ AI +L GS
Sbjct: 178 QTAINSLHGSQT 189
>gi|321249350|ref|XP_003191429.1| single-stranded DNA binding protein [Cryptococcus gattii WM276]
gi|317457896|gb|ADV19642.1| single-stranded DNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 442
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 87/167 (52%), Gaps = 8/167 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + ++ AI
Sbjct: 196 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLEASAKAI-EK 254
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP--HKLYVGNLSWAVKPEDL 219
DGS++ GR +RV ++ ++ + EA K +SP L++G+LS++V + +
Sbjct: 255 DGSEIDGRAIRVNYA----TQRKPNEAAEKRAKVFNDKQSPPAETLWIGSLSFSVTEDQV 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
FG+ G V S R+ DR + FG++ FSS + AAL ++NG
Sbjct: 311 YEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAALKAMNG 357
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 180 NSRTRNAEAL-ISPPKKIFV----YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
N R AE ++P KK E+ ++VG LSW V + L++ F G VVSARV
Sbjct: 166 NGNKRKAEGESVAPAKKARADDGEEEATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARV 225
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
+ DR Q +R FG++ F+ A+ +G+
Sbjct: 226 VFDRDSQKSRGFGYVEFADLEASAKAIEKDGS 257
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S+ A A
Sbjct: 292 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVEDASAA 351
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 352 LKAMNGAEIAGRAIRVDFA 370
>gi|405117835|gb|AFR92610.1| single-stranded DNA binding protein [Cryptococcus neoformans var.
grubii H99]
Length = 444
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F+ G V+S V + ++ SRG GY+ + S+ AI
Sbjct: 198 VFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAKAI-EK 256
Query: 162 DGSDVGGREMRVRFSID------MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
DGS++ GR +RV ++ R R SPP + L++G+LS++V
Sbjct: 257 DGSEIDGRAIRVNYATQRKPNEAAEKRARVFNDKQSPPAET--------LWIGSLSFSVT 308
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ + FG+ G V S R+ DR + FG++ FSS + AAL ++NG
Sbjct: 309 EDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAALKAMNG 359
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 99 PCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
P E L++ +L S ++ E F G V SV + + +TG +G GY+ S++ A A
Sbjct: 294 PAETLWIGSLSFSVTEDQVYEAFGQHGDVQSVRLPTDRDTGAPKGFGYVQFSSVDDATAA 353
Query: 158 IIALDGSDVGGREMRVRFS 176
+ A++G+++ GR +RV F+
Sbjct: 354 LKAMNGAEIAGRAIRVDFA 372
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E+ ++VG LSW V + L++ F G VVSARV+ DR Q +R FG++ F+
Sbjct: 193 EATTNVFVGQLSWNVDNDWLKSEFESCGEVVSARVVFDRDSQKSRGFGYVEFADLGSSAK 252
Query: 260 ALSLNGT 266
A+ +G+
Sbjct: 253 AIEKDGS 259
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 97/179 (54%), Gaps = 15/179 (8%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ +P +R + +++ NL ++ D L + F FG +LS +V+ + +G S+G G++
Sbjct: 100 SIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDA-SGQSKGHGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S SA+NAI L+G + +++ V + R ++ E+ +S K + ++V
Sbjct: 159 FESEESAQNAIDKLNGMLINDKQVFVGPFL----RKQDRESALSGTKF-------NNVFV 207
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
NL ++ DL FG +G + SA V+ D G+ ++ FGF++F++ D A +LNG
Sbjct: 208 KNLLDSMTEADLERIFGEYGAITSAVVMRDVDGK-SKGFGFVNFANVDDAAKAVEALNG 265
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S ++L +F +G + S V R+ + G S+G G++ +++ A A+ AL
Sbjct: 205 VFVKNLLDSMTEADLERIFGEYGAITSAVVMRDVD-GKSKGFGFVNFANVDDAAKAVEAL 263
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKP 216
+G + G+E V + + R E + + E+ K LY+ NL +V
Sbjct: 264 NGKNFDGKEWYVGKAQKKSER----ELELKGQHEQITKETVDKYHGTNLYIKNLDDSVGD 319
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E+L F FGT+ S +V+ D G +R GF+SFS AL G + VA +P
Sbjct: 320 EELMELFSEFGTITSCKVMRDPNG-ISRGSGFVSFSIAEGATRAL---GEMNGKMVAGKP 375
Query: 277 LF 278
L+
Sbjct: 376 LY 377
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 92/190 (48%), Gaps = 21/190 (11%)
Query: 83 EVDDDSSVEEPRSRARP----CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
+V ++ +++ S A P LYV +L + +L ++F V+SV + R+ T
Sbjct: 3 QVLENPTIDAAASGANPSLTTISLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQ 62
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
S G GY+ + + A AI L+ + + G+ +R+ +SI S ++ A
Sbjct: 63 QSLGYGYVNFSNAHDAAKAIDVLNFTPLNGKIIRIMYSIRDPSARKSGAA---------- 112
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAER 257
+++ NL A+ + L + F FG ++S +V D GQ ++ GF+ F S ++ +
Sbjct: 113 -----NVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASGQ-SKGHGFVQFESEESAQ 166
Query: 258 DAALSLNGTV 267
+A LNG +
Sbjct: 167 NAIDKLNGML 176
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S EL+E+F FGT+ S +V R+P GISRG G+++ A A+ +
Sbjct: 308 LYIKNLDDSVGDEELMELFSEFGTITSCKVMRDP-NGISRGSGFVSFSIAEGATRALGEM 366
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G V G+ + V + R +A S
Sbjct: 367 NGKMVAGKPLYVALAQRKEDRRARLQAQFS 396
>gi|171687819|ref|XP_001908850.1| hypothetical protein [Podospora anserina S mat+]
gi|170943871|emb|CAP69523.1| unnamed protein product [Podospora anserina S mat+]
Length = 459
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 1/173 (0%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S + L+ NL D + L E FK F + V + E+G SRG GY+ + +A
Sbjct: 209 SEEKSATLWCGNLGWGIDDNILYEEFKDFEGLTGARVVSDKESGRSRGFGYIDFDTHENA 268
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A A +G D+ GREMR+ F+ + ++ A + V L+VGNL ++
Sbjct: 269 EKAFNAKNGGDLQGREMRLDFAAKPAAAPQDRAAARASKHGDVVSPPSDTLFVGNLPFSA 328
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
+ + F V S R+ D + + F ++SF S D ++A LNG
Sbjct: 329 DEDGVSAFFNEVAKVQSLRIPTDMESGRPKGFAYVSFYSIDDAKNAFEQLNGA 381
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S D + F V S+ + + E+G +G Y++ SI+ AKNA L
Sbjct: 319 LFVGNLPFSADEDGVSAFFNEVAKVQSLRIPTDMESGRPKGFAYVSFYSIDDAKNAFEQL 378
Query: 162 DGSDVGGREMRVRFS 176
+G+D+ GR +R+ F+
Sbjct: 379 NGADIDGRPVRLDFA 393
>gi|313230196|emb|CBY07900.1| unnamed protein product [Oikopleura dioica]
Length = 423
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 25/177 (14%)
Query: 93 PRSRARP--------CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
P SR P L V LP+++ +L E+F G + + ++ R+ ET +S G G
Sbjct: 105 PHSRMSPFTGGQESKTNLIVNYLPQNYTQDQLRELFSSIGDIETCKLCRHRETKMSLGYG 164
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ + AK A+ + +G + + ++V ++ ++ +N
Sbjct: 165 FVNFRRSSDAKRAVDSFNGLSIQTKSIKVSYARPSSNIIKNTN----------------- 207
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
LYV + ++ +++N FGR G ++SAR+LHD+ ++ FI + + E + A+
Sbjct: 208 LYVAGIPRSITLAEIKNLFGRLGKIISARILHDKDTGLSKGVAFIRYDTRVEAERAV 264
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +PRS ++E+ +F G ++S + + +TG+S+G ++ + A+ A+ +
Sbjct: 208 LYVAGIPRSITLAEIKNLFGRLGKIISARILHDKDTGLSKGVAFIRYDTRVEAERAVKHM 267
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ G + V+F+ K + P KLY+ N+ +
Sbjct: 268 HHFNYEGEVLTVKFA------------------KRQSLKKPQKLYLQNMEF 300
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + E+ +MF G V S + ++ E G S+G G++ A A+ AL
Sbjct: 215 VFVKNLSENLTDEEVEKMFNEHGMVTSFAIMKD-EAGKSKGFGFINFEDAEGAHAAVTAL 273
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ G+E+ R + + + + + ++I Y+ LYV NL V +
Sbjct: 274 NGKEIDGKELYCGRAQKKAEREAELKQKFDEVRQ-ERIAKYQG-MNLYVKNLVDEVDDDQ 331
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
LR F GT+ SA+V+ D G+ ++ FGF+ +SS E A++ +NG +
Sbjct: 332 LRAEFAPHGTITSAKVMKDSAGK-SKGFGFVCYSSPEEATRAVTEMNGKM 380
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D +E ++ + LYV NL D +L F P GT+ S +V ++ G S+G G++
Sbjct: 303 DEVRQERIAKYQGMNLYVKNLVDEVDDDQLRAEFAPHGTITSAKVMKD-SAGKSKGFGFV 361
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFS 176
S A A+ ++G + G+ M V +
Sbjct: 362 CYSSPEEATRAVTEMNGKMLLGKPMYVALA 391
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK------ 155
LYV +L R ++L E+F G V S+ V R+ T S G Y+ S A
Sbjct: 26 LYVGDLDRDVTEAQLFEIFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSALDAAAAERAI 85
Query: 156 ---NAIIALDGSDVG--GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
N + G + G + MR+ +S R+ F +++ NL
Sbjct: 86 EALNYTSVIPGKEGGEDSKPMRIMWS------HRDP---------AFRKSGVGNIFIKNL 130
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ + L + F FGT++S +V D G ++ +GF+ + + A+ +NG +
Sbjct: 131 DKDIDNKALHDTFTAFGTILSCKVATDLAG-NSKGYGFVHYEKEEAAQLAIEKVNGML 187
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+ AI L
Sbjct: 117 IFIKNLDKAIDHKALHDTFSAFGNILSCKVAVD-SSGQSKGYGFVQYDSEEAAQKAIEKL 175
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V R E ++ K F ++V NLS + E+LR
Sbjct: 176 NGMLLNDKQVYV------GPFVRKHERDMAVDKTRFT-----NVFVKNLSESTLEEELRK 224
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FG + S V+ D G+ +R FGF++F + DA R A +LNG
Sbjct: 225 IFGEFGAITSVAVMKDEDGK-SRCFGFVNFENAEDAAR-AVEALNG 268
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+ R ++V NL S EL ++F FG + SV V ++ E G SR G++ + A
Sbjct: 202 KTRFTNVFVKNLSESTLEEELRKIFGEFGAITSVAVMKD-EDGKSRCFGFVNFENAEDAA 260
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAV 214
A+ AL+G + ++ V + + R + K V +S LY+ NL ++
Sbjct: 261 RAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQSAKEAVDKSQGLNLYIKNLDDSI 320
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVA 273
E L+ F +GT+ S +V+ D G ++ GF++FS+ E ALS +NG + V
Sbjct: 321 SDEKLKELFSPYGTITSCKVMRDPSG-VSKGSGFVAFSNPEEASRALSEMNGKM----VV 375
Query: 274 FQPLF 278
+PL+
Sbjct: 376 SKPLY 380
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S +E +++ LY+ NL S +L E+F P+GT+ S +V R+P +G+S+G G++
Sbjct: 296 EQSAKEAVDKSQGLNLYIKNLDDSISDEKLKELFSPYGTITSCKVMRDP-SGVSKGSGFV 354
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
+ A A+ ++G V + + V + R +A S + I + S
Sbjct: 355 AFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPIAMASS 409
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D +L +MF FG VLS +V R+ +G+S+G G++ S S A
Sbjct: 33 VFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRD-ASGVSKGYGFVQFYSELSVNIACNVR 91
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ + + + V + SR + E+ ++F +YV NL+ +DL+
Sbjct: 92 NGTLIRNQHIHVSPFV---SRRQWDES------RVFT-----NVYVKNLAETTTDDDLKM 137
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG + SA V+ D++G+ +R+FGF++F ++A A +NGT+
Sbjct: 138 IFEEFGEITSAVVMKDKEGK-SRMFGFVNFEKAEAAVTAIDKMNGTI 183
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 19/176 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L +F+ FG + S V ++ E G SR G++ +A AI +
Sbjct: 121 VYVKNLAETTTDDDLKMIFEEFGEITSAVVMKDKE-GKSRMFGFVNFEKAEAAVTAIDKM 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK---------LYVGNLSW 212
+G+ V +E+ V R + + I K IF E + LYV NL +
Sbjct: 180 NGTIVDEKELHV-------GRAQRKKNRIQDLKVIFKLEKIKRDMKTRKGTNLYVKNLDY 232
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
+V L+ F FGT++S +V+ + ++ GF+ FS+ E A L +NG V
Sbjct: 233 SVDNTKLQELFSEFGTIISCKVM-VHPNRISKGVGFVEFSTSEEASKAMLKMNGKV 287
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D ++L E+F FGT++S +V +P IS+G G++ + A A++ +
Sbjct: 225 LYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNR-ISKGVGFVEFSTSEEASKAMLKM 283
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 284 NGKVVGNKPIYVSLA 298
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N + L EMF+ +GT+ S V + G SRG G++ + SA++A+ L
Sbjct: 185 VYVKNFGDELNDETLKEMFEKYGTITSHRVM--IKDGKSRGFGFVAFENPESAEHAVQEL 242
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G ++G G+ + V + N R + K ++ Y+ + LYV NL ++ E
Sbjct: 243 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-LYVKNLDDSIDDER 301
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + V +PL
Sbjct: 302 LRKEFSPFGTITSAKVMLEEG--RSKGFGFVCFSAAEEATKAVTEMNGRI----VGSKPL 355
Query: 278 F 278
+
Sbjct: 356 Y 356
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L DI+E L E F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 4 LYVGDL--HADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALD 61
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S R+ S +F + NL + + +
Sbjct: 62 TMNFDLIKGRPIRIMWS------QRDPSLRKSGVGNVF---------IKNLDKNIDNKAM 106
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 107 YDTFSAFGNILSCKVAQDEKG-NSKGYGFVHFETEESANTSIEKVNGML 154
>gi|407929152|gb|EKG21988.1| MFS pantothenate transporter [Macrophomina phaseolina MS6]
Length = 345
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL +L + F FG ++ + R+P G+SRG GY+ + +SA AI+ +
Sbjct: 164 LYVGNLFYQTQEDQLRQEFSRFGNIVKTTIIRDP-AGLSRGFGYVEFENDDSAAVAIVQM 222
Query: 162 DGSDVGGREM-----RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+ + GR + R R + R RN E ++PP K L++GN+S+ +
Sbjct: 223 NQRVIDGRRLTVQHHRRREQTEERPRRRN-EGRVNPPSKT--------LFIGNMSFEMSD 273
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
DL + F V+ RV DR+ R F F
Sbjct: 274 RDLNDLFRNIRNVLDVRVAIDRRTGQPRGFAHADF 308
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 194 KKIFVYESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
++ FV S K LYVGNL + + + LR F RFG +V ++ D G +R FG++ F
Sbjct: 151 RRQFVASSEGKRTLYVGNLFYQTQEDQLRQEFSRFGNIVKTTIIRDPAG-LSRGFGYVEF 209
Query: 252 SSD 254
+D
Sbjct: 210 END 212
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N L E F FG LSV+V + G S+G G++ A+ A+ +
Sbjct: 193 VYIKNFGEEMSNERLQETFSIFGKTLSVKVMTD-NIGRSKGFGFVNFEKHQDAQKAVEDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G ++ GR + R + ++ S + I +++ Y+ + LYV NL + E
Sbjct: 252 NGKEINGRMLYVGRAQKRMERQSELKRKFEQIKQ-ERVSRYQGVN-LYVKNLDDGIDDER 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNIF---------IKNLDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SRGYGFVHFETHEAANRAIATMNGML 162
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 73 INGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
I+GK G V V P A+ LY+ NL L E F FG + S+ +S
Sbjct: 165 IDGKQIYAGKFVRKTDRVL-PNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVIS 223
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISP 192
++ E G+SRG G++ S AK A+ AL+G +G + + V + R +
Sbjct: 224 KD-ENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEE 282
Query: 193 PK--KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
+ +I Y + +YV N+ V +DLR HF G + SA+++ D+KG ++ FGF+
Sbjct: 283 KRNEQILKYRGSN-VYVKNIDDNVNDDDLREHFSVCGKITSAKLMRDQKG-ISKGFGFVC 340
Query: 251 FSSDAERDAALSLNGTVESHTVAFQPLF 278
FS+ E A++ T + +PL+
Sbjct: 341 FSTPDEASKAVN---TFHGYMFHRKPLY 365
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D L MF+ FG +LS +V E G S+G G++ S A AI L
Sbjct: 102 VFVKNLSDSIDNVRLQAMFQKFGNILSCKVVVT-EDGKSKGYGFVQFESEEYANAAIEKL 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G++ I R + ++ P + LY+ NL V E LR
Sbjct: 161 NGFIIDGKQ------IYAGKFVRKTDRVLPNPDAKYT-----NLYIKNLDPDVTEEALRE 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
F FG + S + D G +R FGF++F S DA+R A +LNG
Sbjct: 210 KFFEFGKIASLVISKDENG-MSRGFGFVNFESPEDAKR-ALEALNG 253
>gi|125549538|gb|EAY95360.1| hypothetical protein OsI_17193 [Oryza sativa Indica Group]
Length = 290
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 12/166 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV N+P SF E+ ++F G V VEV + + G +G ++TM + A A+
Sbjct: 81 KLYVANIPWSFPAPEIEKLFAQCGAVKDVEVIKG-KDGKKKGFAFVTMATAEEAAAAVEK 139
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ DV GR +RV FS +PP + E HKLYV NL W + +++
Sbjct: 140 LNSLDVMGRTIRVEFSKSFRK--------PAPPPPGTILER-HKLYVSNLPWKARAPNMK 190
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+F +SA+V+ D + +GF+SF + E +AAL+ L+G
Sbjct: 191 EFCSKFNP-LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAALTELDG 235
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 101 ELYVCNLP---RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+LYV NLP R+ ++ E F P LS +V + +G S G G+++ G+ A+ A
Sbjct: 174 KLYVSNLPWKARAPNMKEFCSKFNP----LSAKVVFDSPSGKSAGYGFVSFGTKEEAEAA 229
Query: 158 IIALDGSDVGGREMRVRF--SIDMNSRTRNAEALI 190
+ LDG ++ GR +R+R+ S+D + + A+ I
Sbjct: 230 LTELDGKELMGRPVRLRWRQSVDDSDDSVKADGEI 264
>gi|89257430|gb|ABD64922.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing
protein [Brassica oleracea]
Length = 426
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ + L E F+ FG VL + ++ TG +RG G+L A+ ++
Sbjct: 5 CKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFADPTVAERVVL 64
Query: 160 ---ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+DG V ++ R D R++ +L P + K++VG L+ +V
Sbjct: 65 IRHVIDGKIVEAKKAVPR--DDHVVLNRSSSSLQGSPGPA----TSKKIFVGGLASSVTE 118
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-----LNGTV 267
+ + +F +FGT+ V++D + Q R FGFISF S+ D L LNG +
Sbjct: 119 AEFKKYFAQFGTITDVVVMYDHRTQRPRGFGFISFESEEAVDRVLQRTFHELNGKM 174
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
ES KL++G +SW + LR +F FG V+ A ++ DR R FGF+ F+
Sbjct: 2 ESSCKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKDRATGRARGFGFLVFA 54
>gi|358252904|dbj|GAA50476.1| TAR DNA-binding protein 43 [Clonorchis sinensis]
Length = 507
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 71/264 (26%), Positives = 114/264 (43%), Gaps = 44/264 (16%)
Query: 32 LPTLINFQYPKLSSCWSRSHPAG-FRSVLAVVDEEAVVVEDEINGKDNV----------- 79
LPTL Q+PK + +S +G FR + V D VE + DNV
Sbjct: 75 LPTLT-AQFPKCTGLKYKSEDSGCFRGLRLVGDHIYPPVETDW---DNVFYCVFPKDKKR 130
Query: 80 GGNEVDDDSSVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
G+E +D+ + R C +L V NL D ++L F FG ++ V++ ++P+TG
Sbjct: 131 KGDEDTEDTKQKVKCLEGRKCTDLIVLNLAWQTDETKLRNYFSQFGDLVMVQIKKDPDTG 190
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV 198
SRG G++ + + A+ + + GR VR + R
Sbjct: 191 KSRGYGFVRFS--DYSGQAMCLAERHMIDGRLCDVRIPLSKQEGDRQ------------- 235
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
E K++VGNL ++ + LR HF ++G V+ + + R F F++F + D
Sbjct: 236 -EVSRKIHVGNLPESIGADALRQHFLQYGLVIDVFIP-----KPFRSFAFVTFD---DPD 286
Query: 259 AALSLNG---TVESHTVAFQPLFP 279
A SL G T++ H V P
Sbjct: 287 VAASLLGKDLTIQGHKVTIGSAVP 310
>gi|154338565|ref|XP_001565507.1| hypothetical protein, conserved [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062556|emb|CAM42420.1| hypothetical protein, conserved [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 681
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 39/227 (17%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDN---------VGGNEVDDDSSVEEPRSRARP 99
RS P GF + + V + + IN DN +GG + S V P S+
Sbjct: 173 RSQPDGFAAGV-VTPPTTPMNSNTIN--DNMSASLSQVMIGGAAMS--SGVTMPFSQPND 227
Query: 100 CE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
E L+VC LP S ELLE+F+ G + S +V + TG SRG ++ SI A+
Sbjct: 228 AEVRSNLFVCGLPVSVRDKELLELFEKHGEIESAKVMLDIHTGRSRGIAFVKFKSIEHAE 287
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
NA+ AL+G+ + G ++ VR + NSR A L P +K +V N+ V
Sbjct: 288 NAVDALNGTHINGHQITVRVA---NSR---AAYLPGNPT--------NKTFVRNVPLTVS 333
Query: 216 PEDLRNHFGRFGTVVSARVLHD----RKGQTTRVFGFISFSSDAERD 258
L ++F +FG V + D R Q+ R IS + D+ D
Sbjct: 334 RSTLFDYFAQFGEVTDLSIKSDTAQGRHNQSGRS---ISTADDSTDD 377
>gi|308801675|ref|XP_003078151.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116056602|emb|CAL52891.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 317
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+ D L MF+ G V+S V R+ T SRG G++ S + A++AI
Sbjct: 23 LYVKNISERIDEMTLRTMFEACGEVVSCCVIRDVATNRSRGFGFVKFASTSRAEDAIERF 82
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+ + V+F+ + +PP +YV L A ++L+
Sbjct: 83 NGRECAGKILEVKFANTDGESDKGDSHGTAPPSD--------NVYVKGLPPAWTQDNLKK 134
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+F +FG +V R+LH K +T I F ++E AA+ + NG V
Sbjct: 135 YFSKFGHIVECRLLHANK--STSSGALIRFLRESEATAAVKATNGNV 179
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L F G V+S + + +T SRG GY+ ++SA AI
Sbjct: 206 VFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADVDSAIKAI-EF 264
Query: 162 DGSDVGGREMRVRFSI----DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ GR +RV F+ D + R + SPP L++G+L + +
Sbjct: 265 EGKELDGRAVRVNFANARKPDADKRAKVFNDKRSPPADT--------LWIGSLPFDTTED 316
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+ FG +G V S R+ DR+ + FG+++F A+ AAL +LNG+
Sbjct: 317 HIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVAQATAALEALNGS 366
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 96 RARPCE-LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
R+ P + L++ +LP FD +E + E F +G V SV + + ETG ++G GY+T G +
Sbjct: 297 RSPPADTLWIGSLP--FDTTEDHIYETFGEYGDVQSVRLPTDRETGAAKGFGYVTFGDVA 354
Query: 153 SAKNAIIALDGSDVGGREMRVRFS 176
A A+ AL+GS+ G R +R+ F+
Sbjct: 355 QATAALEALNGSEFGSRRIRIDFA 378
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
E+ + ++VG LSW + + L + F G VVSAR++ DR Q +R FG++ F+
Sbjct: 201 EATNTVFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFA 253
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 90/167 (53%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NL +S D L ++F P+G +LS +++ + + +S+G G++ + ++A AI +
Sbjct: 105 LFVKNLDKSIDNKALHDLFSPYGKILSCKIALD-VSNVSKGHGFVQFDTEDAAHTAIEKI 163
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ + +++ V + R PP F + ++V NLS EDL+
Sbjct: 164 NGTTLHDKQLFVGPFVRRQER--------DPPASKF-----NNVFVKNLSEITTDEDLQK 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGT 266
FG FG + SA V+ + G+ ++ FGF++F + DA + A L+GT
Sbjct: 211 LFGVFGPISSAVVMKEVDGK-SKCFGFVNFENPEDAVK-AVEDLHGT 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 7/178 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +L ++F FG + S V + + G S+ G++ + A A+ L
Sbjct: 194 VFVKNLSEITTDEDLQKLFGVFGPISSAVVMKEVD-GKSKCFGFVNFENPEDAVKAVEDL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G+ +E+ V + N R +A +K +SP LY+ NL + E L++
Sbjct: 253 HGTTFQDKELYVSRAQKKNEREAELKAKFEHERKDTEDKSPTNLYLKNLDDGIDDEKLKD 312
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTVESHTVAFQPLF 278
F FG V S +V+ D G ++ GF++FS SDA A +NG + + +PL+
Sbjct: 313 MFSAFGNVTSCKVMRDPLGH-SKGSGFVAFSTSDAALRAVAQMNGKM----IGSKPLY 365
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PRS LYV +L S + +++ ++FK G V+SV + R+ T S G Y+ +
Sbjct: 8 PRSPFASTALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQ 67
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A AI L+ V G+ +R+ FS S ++ L+V NL
Sbjct: 68 DASRAIEELNFMPVNGKPVRIMFSYRDPSIRKSGSG---------------NLFVKNLDK 112
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
++ + L + F +G ++S ++ D ++ GF+ F + DA A +NGT
Sbjct: 113 SIDNKALHDLFSPYGKILSCKIALD-VSNVSKGHGFVQFDTEDAAHTAIEKINGT 166
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LY+ NL D +L +MF FG V S +V R+P G S+G G++ + ++A A+
Sbjct: 293 PTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDP-LGHSKGSGFVAFSTSDAALRAV 351
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
++G +G + + V + R EA
Sbjct: 352 AQMNGKMIGSKPLYVAMAQKKEERKAKLEA 381
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 98/181 (54%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N + L +MF+P+G ++S +V + +G +G G+++ +A+ A+ AL
Sbjct: 198 VYVKNFSEEINDETLRDMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEAL 257
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+D G+ + R + I+ + + I ++I Y+ + LYV NL + E
Sbjct: 258 NGNDNSGKILYVGRAQKKIERQAELKEKFERIR-MERINRYQGVN-LYVKNLDDNIDDER 315
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V +PL
Sbjct: 316 LRKEFAQFGTITSAKVMTE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VVAKPL 369
Query: 278 F 278
+
Sbjct: 370 Y 370
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 14/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS ++ + E G SRG G++ + +A+ AI +
Sbjct: 106 VFIKNLDKSIDNKALYDTFSAFGNILSCKIVCD-EHG-SRGYGFVHFETEEAARIAIEKV 163
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G+++ V RF SR E L +K + +YV N S + E LR
Sbjct: 164 NGMLLNGKKVFVGRFM----SRRERLEVLGDKMRKF------NNVYVKNFSEEINDETLR 213
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
+ F +G ++SA+V+ D + FGF+SF +A A +LNG S + +
Sbjct: 214 DMFEPYGKIISAKVMTDDGSGKGKGFGFVSFEDPEAAEKAVEALNGNDNSGKILY 268
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 18 LYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 77
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + L +
Sbjct: 78 NFDTIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 122
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +++ D G +R +GF+ F + +A R A +NG +
Sbjct: 123 TFSAFGNILSCKIVCDEHG--SRGYGFVHFETEEAARIAIEKVNGML 167
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSVEEPRSRAR--------PCELYVCNL 107
E A + +NG DN G +++ + ++E R R LYV NL
Sbjct: 248 EAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERINRYQGVNLYVKNL 307
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F FGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 308 DDNIDDERLRKEFAQFGTITSAKVMT--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVV 365
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 366 AKPLYVALA 374
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D + +R FGF++F+S AA+
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ + +++A ++A +NG +
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGML 207
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D + +R FGF++F+S AA+
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ + +++A ++A +NG +
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGML 207
>gi|354466116|ref|XP_003495521.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
gi|344243583|gb|EGV99686.1| Polyadenylate-binding protein 4-like [Cricetulus griseus]
Length = 370
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R++ E +Y+ NL + D L +F +G LSV+V ++ + G S+G G+++
Sbjct: 179 EAELRSKTSEFTNVYIKNLGDNMDDEGLKNIFSKYGQTLSVKVMKD-DNGKSKGFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ +A+NA+ ++G D+ G+ + V R + + E K+ KLY+
Sbjct: 238 YNHEAARNAVEEMNGQDINGQTIFVGRAQKKVERQAELKEKFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDETIDDETLRREFSSFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 13/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFG +LS +V + E SRG G++ ++A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEM 157
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + R+ V +D ++ EA + F +Y+ NL + E L+N
Sbjct: 158 NGKLL--RDCTV--FVDRFKSRKDREAELRSKTSEFT-----NVYIKNLGDNMDDEGLKN 208
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
F ++G +S +V+ D G+ ++ FGF+SF + +A R+A +NG
Sbjct: 209 IFSKYGQTLSVKVMKDDNGK-SKGFGFVSFYNHEAARNAVEEMNG 252
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 18/186 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G Y+ ++ A
Sbjct: 5 AKYRAASLYVGDLHEDVTEDVLFRKFNTVGPVLSIRICRDLVSRRSLGYAYVNFLQLDDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDLIQGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273
+ L HF FG ++S++V+ D +G +R +GF+ + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSPFGKILSSKVMSDEEG--SRGYGFVHYQDQSAADRAIEEMNGKLLRDCTV 167
Query: 274 FQPLFP 279
F F
Sbjct: 168 FVDRFK 173
>gi|402078039|gb|EJT73388.1| nuclear localization sequence binding protein [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 499
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P L+V +L + D L E FK G V+S V + ETG S+G GY+ S A+ A
Sbjct: 251 KPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEKA 310
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVK 215
G+ + GR+++V FS ++ +A+ KK SP L+VGNL +
Sbjct: 311 HAEKQGAFIDGRQIKVDFSTGKSNNNDSADRA----KKFGDVTSPESDTLFVGNLPFDAD 366
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+ + FG + S R+ D++ + FG++SF+S
Sbjct: 367 EDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNS 404
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ P L+VG+LSW V + L+ F G VVSARV+ DR+ ++ FG++ F+S A+ +
Sbjct: 250 DKPATLFVGSLSWNVDDDMLKEEFKFCGEVVSARVITDRETGRSKGFGYVDFASPADAEK 309
Query: 260 A 260
A
Sbjct: 310 A 310
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP D + E F + S+ + + E+G +G GY++ S+ AK+A L
Sbjct: 356 LFVGNLPFDADEDVVSEFFGSVAEIKSLRLPTDQESGRRKGFGYVSFNSVEDAKSAFTQL 415
Query: 162 DGSDVGGREMRVRFSI 177
G + GR R+ +S
Sbjct: 416 SGQSINGRPCRLDYST 431
>gi|242069255|ref|XP_002449904.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
gi|241935747|gb|EES08892.1| hypothetical protein SORBIDRAFT_05g025410 [Sorghum bicolor]
Length = 450
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
A +L++ + + LL+ FK +G V V R+ TG SRG G++ AK
Sbjct: 2 EADAMKLFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMFADPAVAK 61
Query: 156 NAIIALDGSDVGGREMRVRFSI------DMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
+ I ++ + GR + + +I +N+ +A L P + K++VG
Sbjct: 62 HVI--MEKHMIDGRMVEAKKAIARDDHHSLNNIHGSAHGLQRPKHR-------KKIFVGG 112
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
L+ V ED+ HF +FGT++ V++D Q R FGFI++ S+ AL
Sbjct: 113 LASNVTKEDVIKHFKQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRAL 164
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL++G +SW + L +F ++G V A V+ DR +R FGFI F+ D A++
Sbjct: 7 KLFIGGISWDTNEDHLLKYFKKYGEVEEAIVMRDRATGRSRGFGFIMFA-----DPAVAK 61
Query: 264 NGTVESHTV 272
+ +E H +
Sbjct: 62 HVIMEKHMI 70
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+V+ + + D+ + +N+ G+ ++ P+ R + ++V L + ++++ F
Sbjct: 74 MVEAKKAIARDDHHSLNNIHGSA----HGLQRPKHRKK---IFVGGLASNVTKEDVIKHF 126
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
K FGT++ V V + T RG G++T S ++ A+I
Sbjct: 127 KQFGTIIDVVVVYDHHTQRPRGFGFITYDSEDAVHRALI 165
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D + +R FGF++F+S AA+
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ + +++A ++A +NG +
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGML 207
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 12/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L EMF+ +GT+ S +V + G SRG G++ ++A+ A++ L
Sbjct: 173 VYVKNFGEDMTDDKLKEMFEKYGTITSHKVMIK-DDGKSRGFGFVAFEDPDAAEQAVLEL 231
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G +V G+ M V + R + + K ++ Y+ + LYV NL ++ E
Sbjct: 232 NGKEVAEGKCMYVGRAQKKAERQQELKRKFEQLKLERLNRYQGVN-LYVKNLDDSIDDER 290
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ + ++ FGF+ FS+ E A++ +NG + + +PL
Sbjct: 291 LRKEFAPFGTITSAKVMMEEG--RSKGFGFVCFSAPEEATKAVTEMNGRI----IVTKPL 344
Query: 278 F 278
+
Sbjct: 345 Y 345
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 17/182 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL + + + +
Sbjct: 73 NFDMIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKNIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLFPF 280
F FG ++S +V D G ++ +GF+ F ++ + ++ +NG + + F ++
Sbjct: 118 TFSAFGNILSCKVAQDESG-VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTNVYVK 176
Query: 281 NY 282
N+
Sbjct: 177 NF 178
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+R + LYV NL S D L + F PFGT+ S +V E G S+G G++ + A
Sbjct: 270 NRYQGVNLYVKNLDDSIDDERLRKEFAPFGTITSAKVMM--EEGRSKGFGFVCFSAPEEA 327
Query: 155 KNAIIALDG 163
A+ ++G
Sbjct: 328 TKAVTEMNG 336
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 15/173 (8%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
R+R LYV NL S S L MF PFG++LS +V E G S+G G++ + S
Sbjct: 106 RTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQS 163
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A +A AL GS V G+++ V I+ + R A + +YV NL
Sbjct: 164 AVSARSALHGSMVYGKKLFVAKFINKDERAAMAGN-----------QDSTNVYVKNLIET 212
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
V + L F ++GTV S V+ D G+ +R FGF++F + + + A SL G
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAKKAMESLCG 264
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 89/170 (52%), Gaps = 13/170 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + L +F +GTV SV V R+ G SRG G++ + +AK A+ +L
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 162 DGSDVGGREMRVRFSIDMNSR-----TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
G +G +++ V ++ + R + ++ I+ P + LYV NLS ++
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRW-----SNLYVKNLSESMNE 317
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
LR FG +G +VSA+V+ G+ ++ FGF+ FS+ E + A LNG
Sbjct: 318 TRLREIFGCYGQIVSAKVMCHENGR-SKGFGFVCFSNCEESKQAKRYLNG 366
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +L++ F V+SV + RN TG S Y+ S SA NA+ L
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 162 DGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ SD+ G+ MR+ +S D+ R R + LYV NL ++ L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN-------------LYVKNLDSSITSSCLE 129
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280
F FG+++S +V+ + GQ ++ FGF+ F ++ +A+S + V + LF
Sbjct: 130 RMFCPFGSILSCKVVEE-NGQ-SKGFGFVQFDTE---QSAVSARSALHGSMVYGKKLFVA 184
Query: 281 NYV 283
++
Sbjct: 185 KFI 187
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R LYV NL S + + L E+F +G ++S +V + E G S+G G++ + +K A
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQA 360
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
L+G V G+ + VR + R + +
Sbjct: 361 KRYLNGFLVDGKPIVVRVAERKEDRIKRLQ 390
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 16/168 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +++ + G S+G G++ + SA+ AI
Sbjct: 126 ANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATD-SNGQSKGYGFVQYDNEESAQGAID 184
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + E+ K +YV NLS + ++L
Sbjct: 185 KLNGMLMNDKQVYVGHFL----RKQERESTTGMTKF-------QNVYVKNLSESTTDDEL 233
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
+ FG FG + SA V+ D G+ ++ FGFI+F + DA + A SLNG
Sbjct: 234 KKVFGEFGNITSAVVMRDADGK-SKCFGFINFETAEDAAK-AVESLNG 279
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 89/180 (49%), Gaps = 10/180 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S EL ++F FG + S V R+ + G S+ G++ + A A+ +L
Sbjct: 219 VYVKNLSESTTDDELKKVFGEFGNITSAVVMRDAD-GKSKCFGFINFETAEDAAKAVESL 277
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWAVKPEDL 219
+G +E V + + R + ++ K V Y+ + LYV NL + E L
Sbjct: 278 NGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLN-LYVKNLDDTIDDEKL 336
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
+ F FGT+ S +V+ D G +R GF++FS+ E ALS +NG + + +PL+
Sbjct: 337 KELFSEFGTITSCKVMRDPSG-ISRGSGFVAFSTSEEASRALSEMNGKM----IVSKPLY 391
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ + +E + + LYV NL + D +L E+F FGT+ S +V R+P +GISRG G++
Sbjct: 307 EQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDP-SGISRGSGFV 365
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 366 AFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFS 410
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
LYVG+L + V L + F + G VVS RV D + + +G++++S+ + A+ +
Sbjct: 40 LYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAMEM 98
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N LLE+F +G + SV++ + ++G S+G G++ AK AI +
Sbjct: 201 VYVKNFADGTTDEYLLEIFSQYGPLSSVKIMTD-DSGKSKGFGFIRFECHADAKRAIEEV 259
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G GGR++ V + R + + K +I Y L+V NL+ + E L
Sbjct: 260 NGKQFGGRKIYVSRAQKKKEREEELQQKLEEIKQNRIAKYHG-MSLFVKNLAESTDDEHL 318
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F FGTV SA+V+ KG + FGF+SFSS E A+ + ++ +PL+
Sbjct: 319 RKIFAPFGTVTSAKVI--VKGGRRKGFGFVSFSSREEAKKAVE---EMHGKMLSARPLY 372
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LSV V R+ + S G GY+ A +A+ +
Sbjct: 21 LYVGDLHPEVTEAMLYEKFSAAGPILSVRVCRDALSSRSLGYGYVNFHRPEDAGHALNTM 80
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ + S R+ ++V +L ++ ++L +
Sbjct: 81 NFDVLHGKPVRIMWCHRDPSLRRSGVG---------------NVFVNHLDASIDNKELYD 125
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FGT++S +V+ D G + GF+ F + D A+ +NG++
Sbjct: 126 LFAGFGTILSCKVVSDENG--PKGHGFVHFETREAADKAIKEMNGSL 170
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ E ++F P+G + S+ + ++ + G S+G G
Sbjct: 217 DRESKFEE--MKANFTNIYVKNIDLAYTEEEFEKLFAPYGKITSIYLEKD-QDGKSKGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ ++A A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 274 FVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SA+V+ D G+ ++ FGF+ F++ E A++
Sbjct: 334 N-LFVKNLDDSIDSEKLEEEFKPFGTITSAKVMVDDAGK-SKGFGFVCFTTPEEATKAIT 391
Query: 263 LNGTVESHTVAFQPLF 278
+ V +PL+
Sbjct: 392 ---EMNQRMVNNKPLY 404
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + AI L
Sbjct: 51 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKFEDGEKAIEEL 110
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 111 NYTPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 155
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 156 TFSAFGKILSCKVATDELGQ-SKCFGFVHY 184
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 14/177 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + E G S+ G++ + +A+ AI +
Sbjct: 139 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + K F +YV N+ A E+
Sbjct: 198 NGMLLNDREVFVGKHISKKDRESKFEEM----KANFT-----NIYVKNIDLAYTEEEFEK 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +G + S + D+ G+ ++ FGF++F E DAA+ + + Q ++
Sbjct: 249 LFAPYGKITSIYLEKDQDGK-SKGFGFVNFE---EHDAAVKAVEELNDKEINGQKIY 301
Score = 43.9 bits (102), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+S++ + K FGF +NF+ H A ++V + D+E
Sbjct: 257 TSIYLEKDQDGKSKGFGF------VNFE----------EHDAAVKAVEELNDKE------ 294
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
ING+ G +EE + ++ + L+V NL S D +L E F
Sbjct: 295 -INGQKIYVGRAQKKRERMEELKKQYEAIRLEKLAKYQGVNLFVKNLDDSIDSEKLEEEF 353
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S +V + + G S+G G++ + A AI ++ V + + V + +
Sbjct: 354 KPFGTITSAKVMVD-DAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKD 412
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 413 VRRSQLEQQIQ 423
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + ++F FG ++S + ++ + G +G G++
Sbjct: 97 DSQLEE--TKAHYTNLYVKNINSETTDEQFQDLFIQFGPIVSASLEKDAD-GKLKGFGFV 153
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
+ A A+ AL+ SD+ G ++ V + N R + EA +K+ Y+
Sbjct: 154 NYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 211
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 212 N-LFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 269
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 270 ---EKNQQIVAGKPLY 282
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 17 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 75
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E ++
Sbjct: 76 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQD 126
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269
F +FG +VSA + D G+ + FGF+++ + DA ++ ES
Sbjct: 127 LFIQFGPIVSASLEKDADGK-LKGFGFVNYEN--HEDAVKAVEALNES 171
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 203 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFTPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 261
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 262 EEATKAITEKNQQIVAGKPLYV 283
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 92/179 (51%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N F +EL MF+P+G + S+ ++ E G S+G G++ + ++A A+ L
Sbjct: 234 VFVKNFGSDFTEAELAAMFEPYGKITSLYFEKDSE-GKSKGFGFINFENHDAAVKAVEEL 292
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+ +V G+++ V + R + + K+ Y+ + L+V NL ++ E L
Sbjct: 293 NDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVN-LFVKNLDDSLTSEML 351
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F FGT+ SA+V+ D G+ ++ FGF+ FS+ E A++ + V +PL+
Sbjct: 352 EEEFKPFGTITSAKVMVDETGK-SKGFGFVCFSAPEEATKAIT---EMNQRMVLGKPLY 406
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + A+ L
Sbjct: 53 LYVGELNPSVNEAVLYEIFSPLGQVSSIRVCRDAVTKKSLGYAYVNYHKHEDGERALEQL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S RN + I ++ NL + + L +
Sbjct: 113 NYSLIDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPDIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
F FG ++S +V D G+ ++ FGF+ + + DAA+ ++NG
Sbjct: 158 TFSAFGRILSCKVATDEHGR-SKCFGFVHYETAEAADAAIENVNG 201
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 79/191 (41%), Gaps = 35/191 (18%)
Query: 12 SSLFTKITPPATPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVED 71
+SL+ + K FGF INF+ +H A ++V + D+E
Sbjct: 259 TSLYFEKDSEGKSKGFGF------INFE----------NHDAAVKAVEELNDKE------ 296
Query: 72 EINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVCNLPRSFDISELLEMF 120
+NG+ G +EE + S+ + L+V NL S L E F
Sbjct: 297 -VNGQKIYVGRAQKKRERIEELKKQYETTRLEKLSKYQGVNLFVKNLDDSLTSEMLEEEF 355
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
KPFGT+ S +V + ETG S+G G++ + A AI ++ V G+ + V + +
Sbjct: 356 KPFGTITSAKVMVD-ETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKD 414
Query: 181 SRTRNAEALIS 191
R E I
Sbjct: 415 VRRSQLEQQIQ 425
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +V+ + E G S+ G++ + +A AI +
Sbjct: 141 IFIKNLHPDIDNKALHDTFSAFGRILSCKVATD-EHGRSKCFGFVHYETAEAADAAIENV 199
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + K F ++V N +L
Sbjct: 200 NGMSLNDREVFVGKHISKKDRVAKFEEM----KANFT-----NVFVKNFGSDFTEAELAA 250
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F +G + S D +G+ ++ FGFI+F + DA A LN
Sbjct: 251 MFEPYGKITSLYFEKDSEGK-SKGFGFINFENHDAAVKAVEELN 293
>gi|125542191|gb|EAY88330.1| hypothetical protein OsI_09789 [Oryza sativa Indica Group]
Length = 252
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ LP + +E+ E+F+ FG + S+++SR P++G RG +++ S N +
Sbjct: 74 KVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFES-NEVAMKSLE 132
Query: 161 LDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDG +G R MRV R + S+ + + PKK + YVGNL W V DL
Sbjct: 133 LDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKA---DGCLSAYVGNLKWDVTETDL 189
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
R+ F + S R +++ +R F + F D + A+ +N
Sbjct: 190 RDFFKSL-KISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMN 233
>gi|403215569|emb|CCK70068.1| hypothetical protein KNAG_0D03220 [Kazachstania naganishii CBS
8797]
Length = 399
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P L+V L S D L F P G V+S V T SRG GY+ I+ A+ A+
Sbjct: 148 PATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDFEDISYAEKAL 207
Query: 159 IALDGSDVGGREMRVRFSIDM------NSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ G ++ GR + V S N R + + S P L++GNLS+
Sbjct: 208 KEMQGKEIDGRPINVDMSTSKPAGGASNDRAKKFGDVPSEPSDT--------LFLGNLSF 259
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
++L FG+FG ++S R+ + + + FG++ +++ + AL
Sbjct: 260 DADRDNLYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKAL 308
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 72 EINGKDNVGGNEVDDDSSVEEP-----RSRAR-----PCE----LYVCNLPRSFDISELL 117
E+ GK+ + G ++ D S +P RA+ P E L++ NL D L
Sbjct: 209 EMQGKE-IDGRPINVDMSTSKPAGGASNDRAKKFGDVPSEPSDTLFLGNLSFDADRDNLY 267
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F FG ++SV + +PET +G GY+ + AK A+ AL G + R +R+ FS
Sbjct: 268 EIFGKFGEIISVRIPTHPETEQPKGFGYVQYTNTEDAKKALDALQGESINDRPVRLDFS 326
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+ P L+VG LSW+V E L+N F G VVSARV+ +R +R +G++ F
Sbjct: 146 QEPATLFVGRLSWSVDDEWLKNEFAPIGGVVSARVIMERGTDRSRGYGYVDF 197
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS ++ + E G SRG G++ + +A+NAI +
Sbjct: 17 VFIKNLDKSIDNKALYDTFSAFGNILSCKIV-SDEHG-SRGYGFVHFETEEAARNAIEKV 74
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G+++ V RF MN R R E + KK + +Y+ N S + E L+
Sbjct: 75 NGMLLNGKKVFVGRF---MNRRER-LEQMGDKMKKF------NNVYIKNFSEEIDDEKLK 124
Query: 221 NHFGRFGTVVSARVL--HDRKGQTTRVFGFISFS--SDAERDAALSLNGTVESHTV 272
F FG ++SA+V+ +D KG R FGF+S+ AE+ N T E T+
Sbjct: 125 IWFETFGKIISAKVMTGYDGKG---RGFGFVSYEEPEAAEKAVTEMNNKTFEEKTL 177
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L F+ FG ++S +V + G RG G+++ +A+ A+ +
Sbjct: 109 VYIKNFSEEIDDEKLKIWFETFGKIISAKVMTGYD-GKGRGFGFVSYEEPEAAEKAVTEM 167
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+ + + V + R + K ++ Y+ + LYV NL ++ E L
Sbjct: 168 NNKTFEEKTLYVGRAQKRAERQAELKDKFDRLKQERMNRYQGVN-LYVKNLDDSIDDEKL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + + +PL+
Sbjct: 227 RKEFSAFGTITSAKVMTE--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----IVAKPLY 280
>gi|296192806|ref|XP_002744232.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Callithrix jacchus]
Length = 302
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 15/188 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D+ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKLSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FPFNYVLF 285
P + F
Sbjct: 174 VPKEDIHF 181
>gi|403285634|ref|XP_003934122.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Saimiri
boliviensis boliviensis]
Length = 258
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 88/191 (46%), Gaps = 21/191 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FGTV A ++ D+ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGTVEKAEIIADKLSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFPFNYVLF 285
+ P + F
Sbjct: 171 KKAVPKEDIHF 181
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 10/186 (5%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ ++V NL S EL + F FGT+ S V R+ + G S+ G++ S + A
Sbjct: 209 RAKFNNVFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGD-GKSKCFGFVNFESTDDAA 267
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFV--YESPHKLYVGNLSWA 213
A+ AL+G + +E V + + R + K Y+ + LYV NL +
Sbjct: 268 RAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGAN-LYVKNLDDS 326
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTVESHTV 272
+ E L+ F +GT+ S +V+ D G +R GF++FS+ E A L +NG + V
Sbjct: 327 IADEKLKELFSSYGTITSCKVMRDPNG-VSRGSGFVAFSTPEEASRALLEMNGKM----V 381
Query: 273 AFQPLF 278
A +PL+
Sbjct: 382 ASKPLY 387
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ + +A+ AI L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + + F + ++V NLS + ++L+
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGD------RAKF-----NNVFVKNLSESTTDDELKK 231
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
FG FGT+ SA V+ D G+ ++ FGF++F S DA R A +LNG
Sbjct: 232 TFGEFGTITSAVVMRDGDGK-SKCFGFVNFESTDDAAR-AVEALNG 275
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LYV NL S +L E+F +GT+ S +V R+P G+SRG G++
Sbjct: 303 EQSMKEAADKYQGANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRDP-NGVSRGSGFV 361
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ A A++ ++G V + + V + R +A
Sbjct: 362 AFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQA 403
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++S+ +DAA +L+
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSN--PQDAARALD 93
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL N + + +++ PS R G G
Sbjct: 94 ------VLNFTPL--NNRPIRIMYSHRDPSIRKSGQG 122
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 97/185 (52%), Gaps = 17/185 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NLP +D ++L E+F G+V+SV ++ + E G SR G+++ + A+ + L
Sbjct: 194 VFIKNLPAEWDDAKLTEVFGEHGSVMSVALATD-ENGKSRQFGFVSFETHECAEKVVEKL 252
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKP 216
+ G+++ V + R AE + K +E + LYV NL ++
Sbjct: 253 HDKEFEGKKIFVGRA--QKKAERQAELKVKFEK--LKHERNQRYQGVNLYVKNLDDSITD 308
Query: 217 EDLRNHFGRFGTVVSARVLHDR--KGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVA 273
+ LR HF +G + S++V+ D +G ++ FGF+ F+S E A++ +NG + +A
Sbjct: 309 DILREHFAPYGNITSSKVMTDTDVEGTRSKGFGFVCFTSAEEATKAVTEMNGRI----IA 364
Query: 274 FQPLF 278
+PL+
Sbjct: 365 SKPLY 369
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F G VLS+ V R+ T S G Y+ A+ AI +
Sbjct: 13 LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ ++ G+ +R+ +S R+ S IF + NL + + L +
Sbjct: 73 NFDELKGKAIRIMWS------QRDPALRKSGVGNIF---------IKNLDKTIDNKMLYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
F FG ++S +V + G+ ++ +GF+ F + +A A L+G + + F
Sbjct: 118 TFSAFGNILSCKVNVNLAGE-SKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVF 170
>gi|195111486|ref|XP_002000309.1| GI10157 [Drosophila mojavensis]
gi|193916903|gb|EDW15770.1| GI10157 [Drosophila mojavensis]
Length = 356
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L + LP +EL ++F FG + V++ R+PETG S G++ + SA A+ ++
Sbjct: 33 LLINYLPSDMQENELHQLFNSFGLLRQVKIIRDPETGASHCYGFVNYTNSISANKALNSM 92
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G V G++++V + + T+ +YVGNL + +R
Sbjct: 93 NGCPVRGKKLKVSMARPSSDDTKKTN-----------------IYVGNLPLSYDAAQVRE 135
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA-LSLNGTV 267
F RFG +V +L DR +R F+ + A + A L+LN V
Sbjct: 136 IFERFGKIVDLNLLKDRYTNQSRGTAFVRYEMRASVEKAILALNDFV 182
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV P +R ++V NLP S + L +MFK FG ++S +V+ E G SRG G++
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++A AI L+ + V +E+ V + R + E + LY+
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTN-------------LYM 205
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL V + LR F FG +VS + D + + R + F++F + DA R AA ++NG
Sbjct: 206 KNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR-AAETVNG 263
Query: 266 T 266
T
Sbjct: 264 T 264
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 96 RARPCE----LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R +P E LY+ NL D+SE L E F FG ++S+ ++++ E + RG ++
Sbjct: 193 RVKPEEKYTNLYMKNL--DADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFD 249
Query: 150 SINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A+ A ++G+ G + + R + + R +K+ S +Y
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIY 307
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNG 265
V N++ AV E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHG 366
Query: 266 TV 267
+
Sbjct: 367 QM 368
>gi|291387384|ref|XP_002710273.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Oryctolagus
cuniculus]
Length = 298
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FG V A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 87/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 154 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 212
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K + +YV N++ V E+ R
Sbjct: 213 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANYT-----NVYVKNINLEVTEEEFRE 263
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F ++G V S+ + D++G+ +R FGF++FS+ D+ A LNG
Sbjct: 264 LFSKYGEVTSSTLARDQEGK-SRGFGFVNFSTHDSAAKAVEELNG 307
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 10/157 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F +G V S ++R+ E G SRG G
Sbjct: 232 DRQSKFEE--MKANYTNVYVKNINLEVTEEEFRELFSKYGEVTSSTLARDQE-GKSRGFG 288
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ + +SA A+ L+G + G+E+ V + + R ++ EA + +K Y+
Sbjct: 289 FVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSYEAARA--EKANKYQ 346
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL+ + + LR F FG + SA+V+ D
Sbjct: 347 GVN-LYIKNLADDIDDDKLRQMFSEFGPITSAKVMRD 382
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SS P+S A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 55 SSAPHPQSSA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 111
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
S + A+ L+ + + GR R+ +S + + + +++
Sbjct: 112 YNSTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 156
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 157 KNLDTAIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETDEAAAQAIKHVNGM 215
Query: 267 V 267
+
Sbjct: 216 L 216
>gi|324511674|gb|ADY44854.1| RNA-binding protein Musashi Rbp6 [Ascaris suum]
Length = 345
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 16/189 (8%)
Query: 78 NVGGNEVDDDSSVEEPRSRA--RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP 135
N G E S E S P ++++ L L + F FG V V R+P
Sbjct: 20 NAGEGETTQLSPASEDGSSGCNDPGKMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDP 79
Query: 136 ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK 195
T +RG G++T S + ++A D ++ G+++ + + ++ + +I KK
Sbjct: 80 ATKRARGFGFITFADPASVEK-VLAHDQHELDGKKIDPKVAFPKRAQPK----MIIKTKK 134
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
+F+ G LS ED+RN+F ++G V A ++ D+ Q R FGFI+F +D
Sbjct: 135 VFI---------GGLSATSTLEDMRNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDD 185
Query: 256 ERDAALSLN 264
D ++
Sbjct: 186 VSDKVCEIH 194
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 86/168 (51%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D +L E F +G ++SV+V + +G S+G G+++ + +AK A+ +
Sbjct: 192 IYIKNFGDEMDDEKLKEFFSHYGKIVSVKVMTDS-SGKSKGFGFVSFDTHEAAKRAVDIV 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G ++ G+++ V + R + L K+ + K+YV NL + E LR
Sbjct: 251 NGREIFGQQVFVGRAQKKAERQAELKQLFEQRKQERSWRVRGTKIYVKNLDETIDEEKLR 310
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG+++ +V+ + +R FG I FSS E A++ +NG +
Sbjct: 311 KAFSSFGSIIRVKVMQEEG--RSRGFGLICFSSPEEAARAMAEMNGRL 356
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +LP + L F GTVLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRQASLYVGDLPPDVTENMLFLKFSTVGTVLSIRICRDLVTRCSLGYAYVNFLHVADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QRALDTMNFDVIQGQSIRLMWS------QRDAYLRKSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G +R +GF+ F + A D A+ +NG +
Sbjct: 110 DNKTLYEHFSVFGKILSSKVMCDDQG--SRGYGFVHFQNQAAADRAIEEMNGVL 161
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 92/183 (50%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L +F+ G + S V R+ + G S+ G++ +++ A A+ AL
Sbjct: 212 IYVKNLAESTTDEDLKSIFEEHGAITSAVVMRDAD-GKSKCFGFVNFENVDDAAKAVEAL 270
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + ++ + R ++L S K V LY+ NL +V
Sbjct: 271 NGKKFDDKEWYVGKAQKKSERELELKGRFEQSLESVEKYQAV-----NLYIKNLDDSVND 325
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
E L+ F FGT+ S +V+HD G +R GF++FS+ E AL+ LNG + V +
Sbjct: 326 EKLKELFSDFGTITSCKVMHDPSG-ISRGSGFVAFSTPEEASRALAELNGKM----VVSK 380
Query: 276 PLF 278
PL+
Sbjct: 381 PLY 383
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ S +A+NAI
Sbjct: 119 ANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 177
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V + R + ++ +S K + +YV NL+ + EDL
Sbjct: 178 KLNGMLINDKQVYVGNFL----RKQERDSALSNIKF-------NNIYVKNLAESTTDEDL 226
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
++ F G + SA V+ D G+ ++ FGF++F + D A +LNG
Sbjct: 227 KSIFEEHGAITSAVVMRDADGK-SKCFGFVNFENVDDAAKAVEALNG 272
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E + + LY+ NL S + +L E+F FGT+ S +V +P +GISRG G++ +
Sbjct: 304 ESVEKYQAVNLYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDP-SGISRGSGFVAFSTP 362
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A A+ L+G V + + V
Sbjct: 363 EEASRALAELNGKMVVSKPLYV 384
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L + V L + F + G VVS RV D + + +G++++S+ +DAA
Sbjct: 30 PTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSN--PQDAAR 87
Query: 262 SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+L+ + F PL N L + +++ PS R G+
Sbjct: 88 ALD------VLNFTPL--NNKPLRIMYSHRDPSIRKSGMA 119
>gi|348575081|ref|XP_003473318.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like [Cavia
porcellus]
Length = 301
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A A+
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA 66
Query: 160 A----LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
A +DG+ V E++ S + ++R A A + KL+VG L V
Sbjct: 67 ASPHAVDGNTV---ELKRAVSREDSARP-GAHAKVK------------KLFVGGLKGDVA 110
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
DL HF +FG V A ++ D++ R FGF+ F + DA AA+ ++ H V
Sbjct: 111 EGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEV 170
Query: 275 QPLFP 279
+ P
Sbjct: 171 KKAVP 175
>gi|443919574|gb|ELU39701.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 716
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V L + D L + F+ GTV++ V + +G SRG Y+ S A+ A+ +
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-----ESPHKLYVGNLSWAVKP 216
+G + GRE+ V S R N P K+ V+ + L+VGNLSW
Sbjct: 172 NGKQIDGREVNVDIS---QPRQPN------PEKRAQVFGDSESQPSTTLFVGNLSWNTTE 222
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+ L FG FG V R+ D++ + FG++ F
Sbjct: 223 DGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEF 257
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-------------SRARP- 99
GF V EA +E+NGK + G EV+ D + +PR S ++P
Sbjct: 152 GFAYVEFSSPAEAQKAVEEMNGK-QIDGREVNVD--ISQPRQPNPEKRAQVFGDSESQPS 208
Query: 100 CELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
L+V NL S++ +E L F FG V V + + E+G +G GY+ G A A
Sbjct: 209 TTLFVGNL--SWNTTEDGLWTAFGEFGDVTHVRLPTDQESGKPKGFGYVEFGDQEGATKA 266
Query: 158 IIALDGSDVGGREMRVRFS 176
A+ G D+ GR +R+ +S
Sbjct: 267 YEAMKGKDLDGRTLRLDYS 285
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++VG LSW V + L F GTVV+ARV DR +R F ++ FSS AE A+ +
Sbjct: 112 VFVGRLSWNVDNDWLAQEFQGCGTVVAARVQMDRNSGKSRGFAYVEFSSPAEAQKAVEEM 171
Query: 264 NG 265
NG
Sbjct: 172 NG 173
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261
+KLYVGNL+++V+ +DL+ FG FG V SA+V+ DR ++ FGF+ SDAE AA+
Sbjct: 3 NKLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIE 62
Query: 262 SLNG 265
+NG
Sbjct: 63 GMNG 66
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S +L + F FG V S +V + +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEG 63
Query: 161 LDGSDVGGREMRV 173
++G + GR + V
Sbjct: 64 MNGQSLSGRAIVV 76
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L + F FGTVLS +V+ + G S+G G++ S SA+ +I
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V I R R + + +YV NL +DL
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFT------------NVYVKNLPETTTDDDL 229
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+N F GT+ SA V+ D G+ ++ FGF++F ++D+ A L+GTV
Sbjct: 230 KNLFAPHGTITSAIVMTDSNGK-SKCFGFVNFQNTDSAAAAVEKLDGTV 277
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +S + +LLE+F V+S+ V R+ S G Y+ S A NA+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ S S ++ A +++ NL ++ + LR+
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSGYA---------------NVFIKNLDLSIDNKALRD 141
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FGTV+S +V D GQ ++ +GF+ F S+ + ++ LNG +
Sbjct: 142 TFAAFGTVLSCKVAVDSNGQ-SKGYGFVQFESEESAEISIEKLNGML 187
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 37/194 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP + +L +F P GT+ S V + G S+ G++ + +SA A+ L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTD-SNGKSKCFGFVNFQNTDSAAAAVEKL 273
Query: 162 DGSDVG-------GR---------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
DG+ +G GR E++ +F + SR + L
Sbjct: 274 DGTVLGDDKTLYVGRAQRKAEREAELKAKFEQERKSRFEKLQGA--------------NL 319
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LN 264
Y+ NL + E L+ F +GT+ S +V+ D+ G ++ GF++FSS E AL+ +N
Sbjct: 320 YIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHG-LSKGSGFVAFSSPDEATKALNEMN 378
Query: 265 GTVESHTVAFQPLF 278
G ++ +PL+
Sbjct: 379 GKMKGR----KPLY 388
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL D +L E+F +GT+ S +V + + G+S+G G++ S + A A+
Sbjct: 317 ANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLD-QHGLSKGSGFVAFSSPDEATKALN 375
Query: 160 ALDGSDVGGREMRVRFSIDMNSRT----------RNAEALISPPKKIFVYE------SPH 203
++G G + + V + R R A + S P I + SP
Sbjct: 376 EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQ 435
Query: 204 KLYVGNLSWAVKP 216
++Y G + + P
Sbjct: 436 QMYYGQGNPGLAP 448
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R ++YV NL +L F+ FG V+ + + + G +RG G++ M +S K
Sbjct: 192 RDEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYD-GNARGFGFIQMSDEDSLK 250
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI ++G + GR + V S+ R A PK+ KLYVGNLSW +
Sbjct: 251 -AIEGMNGVEFDGRTLNVNKSLPKGQRPAAA-----APKET-------KLYVGNLSWGTE 297
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNG 265
LR FG +G+V+ + DR+ R F F++ D AA +G
Sbjct: 298 EGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMGPDDALRAADETDG 347
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179
F P SV+V + ETG RG ++ M + + + AI L+ S++ GR + V S+
Sbjct: 117 FSPKRGGGSVDVPLSRETGKCRGFAFVAMTNSDDHEAAIEQLNMSEIAGRTIYVSESL-- 174
Query: 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239
+ + AE + E K+YVGNL++ EDL+ F FG V+ + D
Sbjct: 175 -PKDQVAEKKKKFQGRKKRDEGA-KIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYD 232
Query: 240 GQTTRVFGFISFSSDAERDAALSLNG 265
G R FGFI S + A +NG
Sbjct: 233 G-NARGFGFIQMSDEDSLKAIEGMNG 257
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 15/178 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D + + F FG +LS +V+++ E G S+G G++ + +A +I +
Sbjct: 101 VFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQD-ENGTSKGYGFVHFETEEAANKSIEKV 159
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R E + K+F +YV N + E LR
Sbjct: 160 NGMLLNGKKVYVGRFIPRKER----EKELGEKAKLFT-----NVYVKNFGEDLTEEQLRT 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F ++G + S +++ G+ ++ FGF++F S +A A +LNG + +PL+
Sbjct: 211 MFEKYGKITSYKIMSKDDGK-SKGFGFVAFESPEAAETAVEALNG---KEIIDGKPLY 264
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 94/183 (51%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N +L MF+ +G + S ++ + + G S+G G++ S +A+ A+ AL
Sbjct: 194 VYVKNFGEDLTEEQLRTMFEKYGKITSYKIM-SKDDGKSKGFGFVAFESPEAAETAVEAL 252
Query: 162 DGSDV-GGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G ++ G+ + V + R R EAL +++ Y+ + LYV NL +
Sbjct: 253 NGKEIIDGKPLYVGRAQKKAERQQELKRRFEALKM--ERLNRYQGVN-LYVKNLDDTIDD 309
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
E LR F FGT+ SA+V+ + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 310 ERLRKEFSPFGTITSAKVMME--DNRSKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 363
Query: 276 PLF 278
PL+
Sbjct: 364 PLY 366
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 17/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F G VLS+ V R+ T S G Y+ A+ A+
Sbjct: 11 ASLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR +R+ +S S ++ +++ NL ++ + +
Sbjct: 71 TMNFDLIKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDRSIDNKAM 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ F FG ++S +V D G T++ +GF+ F ++ + ++ +NG +
Sbjct: 116 YDTFSAFGNILSCKVAQDENG-TSKGYGFVHFETEEAANKSIEKVNGML 163
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R+ + S +YV NL + ++L+
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVP---------SFTNVYVKNLPKEITDDELKK 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG++G + SA V+ D+ G +R FGF++F S +A A +NG
Sbjct: 258 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFVSPEAAAVAVEKMNG 301
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ + A A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V + R + ++L +
Sbjct: 403 NGKMIGRKPLYVALAQRKEERQAHLQSLFT 432
>gi|393912245|gb|EJD76653.1| musashi [Loa loa]
Length = 336
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 15/188 (7%)
Query: 78 NVGGNE-VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE 136
N NE + S E+ S P ++++ L L + F FG V V R+P
Sbjct: 7 NANDNETIQQSPSSEDGTSSNDPGKMFIGGLSWQTTAEGLRDYFGKFGEVNECMVMRDPA 66
Query: 137 TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKI 196
T +RG G++T S + ++A + ++ G+++ + + ++++ +I KK+
Sbjct: 67 TKRARGFGFITFTDPASV-DKVLAQELHELDGKKIDPKVAFPKKAQSK----MIIKTKKV 121
Query: 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256
F+ G LS ED++N+F ++G V A ++ D+ Q R FGFI+F +D
Sbjct: 122 FI---------GGLSATSTLEDMKNYFEQYGKVEDAMLMFDKTTQRHRGFGFITFDNDDV 172
Query: 257 RDAALSLN 264
D ++
Sbjct: 173 SDKVCEIH 180
>gi|353241625|emb|CCA73428.1| related to NSR1-nuclear localization sequence binding protein
[Piriformospora indica DSM 11827]
Length = 657
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 13/171 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C ++V L + D L F+ G V+ V + +TG S+G GY++ + +A+ AI
Sbjct: 391 CNIFVGKLSWNVDDEWLKSEFEACGEVVRASVQMDRQTGRSKGFGYVSFSTPEAAEKAIA 450
Query: 160 ALDGSDVGGREMRVRFSI----DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
++G ++ GR + V + + R + +S K+ L+VGN+S+
Sbjct: 451 EMNGKEIDGRAVNVNAATPKTPNPAGRAKQFGDTVSAESKV--------LFVGNVSFNAN 502
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+ L FG G +VS R+ DR+ + FG++ F+S + + A +LNG
Sbjct: 503 EDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFNALNG 553
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V N+ SF+ +E L E F G ++SV + + ETG +G GY+ S+ +AK+A
Sbjct: 492 LFVGNV--SFNANEDMLWETFGEHGDIVSVRLPTDRETGQMKGFGYVEFTSVENAKSAFN 549
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+ GR +R+ FS
Sbjct: 550 ALNGKDIAGRNIRLDFS 566
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 16/196 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S EE RA ++V N+ S E ++ FG +S+ +S + E G S+G G++
Sbjct: 211 SKAEE--QRAHFTNVFVKNVDLSVTEKEFEDLVSKFGETVSIALSLD-EEGKSKGFGFVN 267
Query: 148 MGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPH- 203
S +A+ A+ L+ +V G+++ R + ++ ++ R I ++ F +S
Sbjct: 268 YVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTELRKT---IEEKRQEFDAKSAGV 324
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS- 262
LYV NL + LR F FGT+ S +V+ D +G +R FGF+ +SS E A+S
Sbjct: 325 NLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERG-VSRNFGFVCYSSPEEATKAVSE 383
Query: 263 LNGTVESHTVAFQPLF 278
+NG + + +PL+
Sbjct: 384 MNGKM----IGSKPLY 395
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L + F FG +LS +V + E G SRG ++ + +A AI +
Sbjct: 130 IFIKNLDESIDNKALHDTFAAFGEILSCKVGVD-EDGKSRGFAFVHYQTGEAADAAIKGV 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +++ V I R AE + +FV N+ +V ++ +
Sbjct: 189 DGMMLNDKKVFVGHHIGKKERQSKAEEQRAHFTNVFVK---------NVDLSVTEKEFED 239
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLN 264
+FG VS + D +G+ ++ FGF+++ S +A A LN
Sbjct: 240 LVSKFGETVSIALSLDEEGK-SKGFGFVNYVSHEAAEKAVDELN 282
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 42 LYVGELDPSVTEAMLFEIFNIIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S + + + I ++ NL ++ + L +
Sbjct: 102 NYSAIKGRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDESIDNKALHD 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F FG ++S +V D G+ +R F F+ + + DAA+
Sbjct: 147 TFAAFGEILSCKVGVDEDGK-SRGFAFVHYQTGEAADAAI 185
>gi|325179817|emb|CCA14220.1| RNA binding protein putative [Albugo laibachii Nc14]
Length = 360
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 23/169 (13%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
+YV NL +L + + G V + +EV G S+GCG +T + + A+NAI
Sbjct: 72 VYVGNLSWKVKWQDLKDHMRSAGDVEHAVIMEVG-----GRSKGCGIVTYATESEAQNAI 126
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ +++ GR++ VR R NA A P K ++YVGNL W VK +
Sbjct: 127 ETLNDTELDGRKIFVR-----EDREENASA--QPRAKGC------RVYVGNLPWTVKWQA 173
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
L++H + GTV+ A VL + G ++ G + FS+ D ++A LN T
Sbjct: 174 LKDHMKQAGTVIHADVL-EEAGGWSKGCGLVEFSTPDEAQNAIDMLNDT 221
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA+ C +YV NLP + L + K GTV+ +V G S+GCG + + + A+
Sbjct: 154 RAKGCRVYVGNLPWTVKWQALKDHMKQAGTVIHADVLEEA-GGWSKGCGLVEFSTPDEAQ 212
Query: 156 NAIIALDGSDVGGREMRVRFSI--DMNSRTRNA-------EALISPPKKIFVYESPH--- 203
NAI L+ +++ GR + VR D S T A + F P
Sbjct: 213 NAIDMLNDTELEGRNIFVREDREPDGGSITSIARRGGRGGRSSGGRGNSRFAGRGPREGN 272
Query: 204 ----------KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
++YVGNL W +L N F G V A V+ G+ +R FG + F S
Sbjct: 273 SGHSHSSDVKQVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPDGR-SRGFGIVKFKS 331
Query: 254 DAERDAALS-LNGT 266
+E A+ LNGT
Sbjct: 332 SSEAQCAIDELNGT 345
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV NLP L +F+ G V EV P+ G SRG G + S + A+ AI
Sbjct: 283 QVYVGNLPWDTTSRNLENLFQSAGDVERAEVVEFPD-GRSRGFGIVKFKSSSEAQCAIDE 341
Query: 161 LDGSDVGGREMRVRFS 176
L+G++ GR + VR
Sbjct: 342 LNGTEHNGRRLEVRLD 357
>gi|324507975|gb|ADY43373.1| Nucleolysin TIAR [Ascaris suum]
Length = 290
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 92 EPRSRAR-----PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
EP S+A+ +++ +L D L + F PFG V +V R+ T S+G G++
Sbjct: 18 EPGSQAKVDTSKHFHVFIGDLSPEVDNKALKDAFAPFGEVSDAKVIRDSTTLKSKGYGFV 77
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK----KIFVYESP 202
+ A+ AI ++G +G R +R ++ + T + S P+ +F P
Sbjct: 78 SYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPTGT---DGQQSKPELSYDDVFNQTGP 134
Query: 203 HK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDA 259
+Y+GN++ +V EDLR F +FG +V R+ T+ F F+ F D+ +A
Sbjct: 135 DNTSVYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFK------TQGFAFVRFDKKDSACNA 188
Query: 260 ALSLNGT 266
+ +NGT
Sbjct: 189 IVKMNGT 195
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N+ +S + +L F FG ++ V + + ++G ++ +SA NAI+ +
Sbjct: 139 VYIGNVNQSVNDEDLRAAFDKFGRIVEVRIFK------TQGFAFVRFDKKDSACNAIVKM 192
Query: 162 DGSDVGGREMRVRF--SIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+G+++GG+ ++ + + + ++ +NA A + + + P+ Y
Sbjct: 193 NGTEIGGQTVKCSWGRTPEGHNNQQNAAANYNQMQGAYGAYGPYGAYT 240
>gi|121606987|ref|YP_984316.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120595956|gb|ABM39395.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 152
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ +SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAIN 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ M S A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMASDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R+ + S +YV NL + ++L+
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVP---------SFTNVYVKNLPKEITDDELKK 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG++G + SA V+ D+ G +R FGF++F S +A A +NG
Sbjct: 244 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFVSPEAAAVAVEKMNG 287
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ + A A+ +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V + R + ++L +
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHLQSLFT 418
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 12/193 (6%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E +S+AR + LY+ N P D +L EMF FG + S V ++ E G S+G G++
Sbjct: 181 ERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCF 239
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLY 206
+ A+NA+ + G ++ GR + + R + + + + Y LY
Sbjct: 240 LDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLY 299
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL + + L F G++ SA+V+ D + ++ FGF+ F++ + A++ +NG
Sbjct: 300 VKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR-SKGFGFVCFANPEQAARAVTDMNG 358
Query: 266 TVESHTVAFQPLF 278
T+ + +PL+
Sbjct: 359 TI----IGSKPLY 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 102 LYVCNL-PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LYV +L PR D S L F G VLS V R+ T S G GY+ A+ A+
Sbjct: 15 LYVGDLHPRVSD-SALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ + GR +R+ +S S ++ + I ++ NL +++ ++L
Sbjct: 74 LNYESLMGRPIRIMWSQRDPSLRKSGKGNI---------------FIKNLDKSIEQKELY 118
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AER 257
+ F FG ++S +++ D GQ ++ +GF+ F + AER
Sbjct: 119 DTFSFFGRILSCKIVMDENGQ-SKGYGFVHFEKEECAER 156
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R+ + S +YV NL + ++L+
Sbjct: 193 NGMLLNDKQVFVGHFVRRQDRARSESGAVP---------SFTNVYVKNLPKEITDDELKK 243
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG++G + SA V+ D+ G +R FGF++F S +A A +NG
Sbjct: 244 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFVSPEAAAVAVEKMNG 287
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ + A A+ +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 388
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V + R + ++L +
Sbjct: 389 NGKMIGRKPLYVALAQRKEERQAHLQSLFT 418
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 12/193 (6%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E +S+AR + LY+ N P D +L EMF FG + S V ++ E G S+G G++
Sbjct: 181 ERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCF 239
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLY 206
+ A+NA+ + G ++ GR + + R + + + + Y LY
Sbjct: 240 LDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLY 299
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL + + L F G++ SA+V+ D + ++ FGF+ F++ + A++ +NG
Sbjct: 300 VKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR-SKGFGFVCFANPEQAARAVTDMNG 358
Query: 266 TVESHTVAFQPLF 278
T+ + +PL+
Sbjct: 359 TI----IGSKPLY 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 102 LYVCNL-PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LYV +L PR D S L F G VLS V R+ T S G GY+ A+ A+
Sbjct: 15 LYVGDLHPRVSD-SALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ + GR +R+ +S S ++ + I ++ NL +++ ++L
Sbjct: 74 LNYESLMGRPIRIMWSQRDPSLRKSGKGNI---------------FIKNLDKSIEQKELY 118
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AER 257
+ F FG ++S +++ D GQ ++ +GF+ F + AER
Sbjct: 119 DTFSFFGRILSCKIVMDENGQ-SKGYGFVHFEKEECAER 156
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL + D L E+F FG +LS +V+ + G S+G G++ + SA+ AI
Sbjct: 123 ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAAIN 181
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G R+M V ++ R R+ E + +Y+ NL +DL
Sbjct: 182 GLNGMLANNRKMFV----GLHMRRRDREVKFT------------NVYIKNLPTEFSEDDL 225
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
R F FG + SA V+ D G ++ FGF++F
Sbjct: 226 RQEFAPFGEITSAVVMRDADG-ASKCFGFVNF 256
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 17/176 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + D +L +F V +V V R+ +G+S G GY+ S A A+
Sbjct: 35 ASLYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALE 94
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
AL+ + + G+ +RV FS S ++ A L+V NL + ++L
Sbjct: 95 ALNFTPLIGKYIRVMFSNRDPSLRKSGRA---------------NLFVKNLEPNIDSKNL 139
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V D GQ ++ +GF+ + ++ +AA++ LNG + ++ F
Sbjct: 140 YEIFSSFGAILSCKVATDSAGQ-SKGYGFVQYETEESAEAAINGLNGMLANNRKMF 194
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLP F +L + F PFG + S V R+ + G S+ G++ A A+
Sbjct: 211 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDAD-GASKCFGFVNFKKPEFAIEAVEKA 269
Query: 162 DGSDVGGREMRVRFSIDMNSRT--------RNAEALISPPKKIFVYESPHKLYVGNLSWA 213
+G +G + + V + R R + + P I LY+ N+
Sbjct: 270 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGI-------NLYLKNIDDG 322
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTVESHTV 272
+ E L+ F FG V S +V+ D +G+ ++ GF+SF+ ++A + A +NG + V
Sbjct: 323 INDEGLKKLFEEFGQVASCKVMVDARGR-SKGSGFVSFATAEAGQRAINRMNGRI----V 377
Query: 273 AFQPLF 278
+PL+
Sbjct: 378 GKKPLY 383
>gi|255085602|ref|XP_002505232.1| predicted protein [Micromonas sp. RCC299]
gi|226520501|gb|ACO66490.1| predicted protein [Micromonas sp. RCC299]
Length = 211
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 9/170 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS-RGCGYLTMGSINSAKNAI 158
+LYV +LP + + +LEMFKPFG VL ++V + E +S +G ++ + A A
Sbjct: 33 AKLYVGHLPSTMNAERMLEMFKPFGRVLQIDVIPDRERQLSCKGFAFVLFSTPEEAI-AA 91
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
AL+G V G+ + VR + + A ++P KLYV + + E+
Sbjct: 92 KALNGHVVEGKSIDVRLKAEPRAPREPVNAPVAP------VNDDAKLYVAYMPDHYRAEE 145
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L+ +G RV+ DR+ +R FGF + + AA+ LNG +
Sbjct: 146 LKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLNGQM 195
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARP-----------CEL 102
GF VL EEA+ + +NG V G +D E PR+ P +L
Sbjct: 76 GFAFVLFSTPEEAIAAK-ALNGH-VVEGKSIDVRLKAE-PRAPREPVNAPVAPVNDDAKL 132
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
YV +P + EL + +P+G V V + ETG SRG G+ M A AI L+
Sbjct: 133 YVAYMPDHYRAEELKMLLQPYGLPSDVRVITDRETGRSRGFGFAQMMDEQQAMAAIQGLN 192
Query: 163 GSDVGGREMRVRFS 176
G + G+ + VR +
Sbjct: 193 GQMLDGKTLVVRIA 206
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAV 290
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 45 SANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIK 145
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 NLDAAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
>gi|346321757|gb|EGX91356.1| nucleolin protein Nsr1, putative [Cordyceps militaris CM01]
Length = 438
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 19/190 (10%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + ++ +S P L+ +L D + L E FK F ++ V + TG SRG GY+
Sbjct: 168 DEASKKAKSDDAPSTLFAGSLSWGVDDNALYEAFKSFSGLVHARVVTDKNTGRSRGFGYV 227
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPH-- 203
SA A A+ G +V GR + + ++ NA+ S P+ + S H
Sbjct: 228 DFADSESATKAYEAMQGQEVDGRALNLDYA--------NAKPAESKPQDRAADRASRHGD 279
Query: 204 -------KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DA 255
L+VGNL + + + +R FG V S R+ D + + FG+++F+S D
Sbjct: 280 TLSAESETLFVGNLPFDTEQDAVREFFGEVAEVASIRLPTDPESGNLKGFGYVTFNSIDD 339
Query: 256 ERDAALSLNG 265
+ A + NG
Sbjct: 340 AKTALEAKNG 349
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP + + E F V S+ + +PE+G +G GY+T SI+ AK A+ A
Sbjct: 288 LFVGNLPFDTEQDAVREFFGEVAEVASIRLPTDPESGNLKGFGYVTFNSIDDAKTALEAK 347
Query: 162 DGSDVG-GREMRV 173
+G+ +G GR R
Sbjct: 348 NGASIGNGRNARA 360
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAV 290
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 151
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 15/169 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL S D L + F FGTVLS +V+ + G S+G G++ S SA+ +I
Sbjct: 123 ANVFIKNLDLSIDNKALRDTFAAFGTVLSCKVAVD-SNGQSKGYGFVQFESEESAEISIE 181
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V I R R + + +YV NL +DL
Sbjct: 182 KLNGMLLNDKQVYVGHFIRHQERIRANGSQFT------------NVYVKNLPETTTDDDL 229
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+N F GT+ SA V+ D G+ ++ FGF++F ++D+ A L+GTV
Sbjct: 230 KNLFAPHGTITSAIVMTDSNGK-SKCFGFVNFQNTDSAAAAVEKLDGTV 277
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L +S + +LLE+F V+S+ V R+ S G Y+ S A NA+ L
Sbjct: 37 LYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHL 96
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ S S ++ A +++ NL ++ + LR+
Sbjct: 97 NFTPVNGKPIRIMISNRDPSIRKSGYA---------------NVFIKNLDLSIDNKALRD 141
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FGTV+S +V D GQ ++ +GF+ F S+ + ++ LNG +
Sbjct: 142 TFAAFGTVLSCKVAVDSNGQ-SKGYGFVQFESEESAEISIEKLNGML 187
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 37/194 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP + +L +F P GT+ S V + G S+ G++ + +SA A+ L
Sbjct: 215 VYVKNLPETTTDDDLKNLFAPHGTITSAIVMTD-SNGKSKCFGFVNFQNTDSAAAAVEKL 273
Query: 162 DGSDVG-------GR---------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205
DG+ +G GR E+R +F + SR + L
Sbjct: 274 DGTVLGDDKTLYVGRAQRKAEREAELRAKFEQERKSRFEKLQGA--------------NL 319
Query: 206 YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LN 264
Y+ NL + E L+ F +GT+ S +V+ D+ G ++ GF++FSS E AL+ +N
Sbjct: 320 YIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHG-LSKGSGFVAFSSPDEATKALNEMN 378
Query: 265 GTVESHTVAFQPLF 278
G ++ +PL+
Sbjct: 379 GKMKGR----KPLY 388
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 17/133 (12%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ NL D +L E+F +GT+ S +V + + G+S+G G++ S + A A+
Sbjct: 317 ANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLD-QHGLSKGSGFVAFSSPDEATKALN 375
Query: 160 ALDGSDVGGREMRVRFSIDMNSRT----------RNAEALISPPKKIFVYE------SPH 203
++G G + + V + R R A + S P I + SP
Sbjct: 376 EMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGISSLPSGIPGFHPGAARVSPQ 435
Query: 204 KLYVGNLSWAVKP 216
++Y G + + P
Sbjct: 436 QMYYGQGNPGLAP 448
>gi|341889790|gb|EGT45725.1| hypothetical protein CAEBREN_10423 [Caenorhabditis brenneri]
Length = 311
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 18/195 (9%)
Query: 70 EDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129
+D ++G + N DD S P ++++ L L + F FG V
Sbjct: 8 QDGLDGHEEARLNADSDDGS----HGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNEC 63
Query: 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEAL 189
V R+P T +RG G++T +S + A D ++ G+++ + + ++ + L
Sbjct: 64 MVMRDPATKRARGFGFITFVDPSSVDKVLHARD-HELDGKKIDPKVAFPKRTQAK----L 118
Query: 190 ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249
++ KK+F+ G LS ED++ +F +G V A +++D+ Q R FGF+
Sbjct: 119 VTKTKKVFI---------GGLSATSTLEDMKQYFETYGKVEDAMLMYDKATQRHRGFGFV 169
Query: 250 SFSSDAERDAALSLN 264
+F SD D ++
Sbjct: 170 TFDSDEVADKVCEIH 184
>gi|115476954|ref|NP_001062073.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|42408160|dbj|BAD09298.1| putative RNA-binding protein cp33 [Oryza sativa Japonica Group]
gi|113624042|dbj|BAF23987.1| Os08g0483200 [Oryza sativa Japonica Group]
gi|125561943|gb|EAZ07391.1| hypothetical protein OsI_29641 [Oryza sativa Indica Group]
gi|125603790|gb|EAZ43115.1| hypothetical protein OsJ_27706 [Oryza sativa Japonica Group]
gi|215686913|dbj|BAG90783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701414|dbj|BAG92838.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 90/178 (50%), Gaps = 22/178 (12%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+R L N+P ++ +F G+V+ VE+S T +RG ++TMGS
Sbjct: 71 PRTR-----LIAQNIPWDCTADDMRALFGKHGSVVDVELSMYNSTR-NRGLAFVTMGSEE 124
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI--SPPKKIFVYESPHKLYVGNL 210
A +A+ L+ + + R ++V F+ R+R + ++ +P K H ++VGNL
Sbjct: 125 EALSALNHLNSTTLNDRTIKVDFT-----RSRKKQYVVPSAPMPK-------HSVFVGNL 172
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGT 266
+W V+ LR F V S V+ H + + +GF+SFSS +AA+S NGT
Sbjct: 173 TWRVRSRHLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKEAAEAAISTFNGT 230
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA LYV N+ E +FK +G V S + R+ + G + G G++ + A+
Sbjct: 219 RAHFTNLYVKNIDPEVTDEEFENLFKQYGQVQSSLLKRD-DQGRNLGFGFVNFETHEEAQ 277
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWA 213
A+ AL SD GR++ V + R + ++ Y+ + LY+ NL
Sbjct: 278 KAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQARQERMNKYQGVN-LYIKNLEDD 336
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273
V E LR F FGT+ S RV+ D +G+ ++ FGF+ +S+ E A++ + + +
Sbjct: 337 VDDEKLRAEFEPFGTITSCRVMRDERGK-SKGFGFVCYSAPDEATKAVA---EMNNKMIG 392
Query: 274 FQPLF 278
+PL+
Sbjct: 393 SKPLY 397
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG VLS +V+ + E G S+G G++ + +A+NAI ++
Sbjct: 132 IFIKNLDEQIDNKALHDTFAAFGNVLSCKVATD-EHGNSKGYGFVHYETAEAAENAIKSV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R ++ I + F LYV N+ V E+ N
Sbjct: 191 NGMLLNDKKVYVGPHISRKER----QSKIDEMRAHFT-----NLYVKNIDPEVTDEEFEN 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F ++G V S+ + D +G+ FGF++F + E A+
Sbjct: 242 LFKQYGQVQSSLLKRDDQGRNLG-FGFVNFETHEEAQKAV 280
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + S L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 44 LYVGELDPTVTESMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQL 103
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + R R+ +S + + + I ++ NL + + L +
Sbjct: 104 NYSSIKNRPCRIMWSQRDPALRKTGQGNI---------------FIKNLDEQIDNKALHD 148
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG V+S +V D G ++ +GF+ + +++A +A S+NG +
Sbjct: 149 TFAAFGNVLSCKVATDEHG-NSKGYGFVHYETAEAAENAIKSVNGML 194
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D + +E ++ + LY+ NL D +L F+PFGT+ S V R+ E G S+G G++
Sbjct: 313 DQARQERMNKYQGVNLYIKNLEDDVDDEKLRAEFEPFGTITSCRVMRD-ERGKSKGFGFV 371
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
+ + A A+ ++ +G + + V + R + E+ I+ +++ + +
Sbjct: 372 CYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQRQQLRMQQ 425
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 88/178 (49%), Gaps = 7/178 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N R+ +L ++FK +GT+ S V NP+ G S+G G++ SA+ A+ +
Sbjct: 195 VYVKNFGRNLTQEQLYDLFKNYGTITSCVVMANPD-GTSKGFGFIAFEEPESAEKAVTEM 253
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-KIFVYESPHKLYVGNLSWAVKPEDLR 220
+ ++ G + V + + R + + K + + +Y+ NL + LR
Sbjct: 254 NNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLERYNRIQGANVYIKNLDDTFDNDRLR 313
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +FG + SA+V+ + G ++ FGF+ FS+ E A++ ++ + +P++
Sbjct: 314 KEFSQFGAITSAKVMTE--GGRSKGFGFVCFSTPEEASKAIT---EMDGRMIGSKPIY 366
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ + +
Sbjct: 14 LYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDTM 73
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S +F + NL ++ + + +
Sbjct: 74 NFDLLKGKPIRIMWS------QRDPSLRKSGIGNVF---------IKNLDKSIDNKAMYD 118
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ F S +A A +NG +
Sbjct: 119 TFSAFGNILSCKVAIDDDG-VSKGYGFVHFESIEAANKAIEKVNGML 164
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E +R + +Y+ NL +FD L + F FG + S +V E G S+G G++ +
Sbjct: 288 ERYNRIQGANVYIKNLDDTFDNDRLRKEFSQFGAITSAKVM--TEGGRSKGFGFVCFSTP 345
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A AI +DG +G + + V +
Sbjct: 346 EEASKAITEMDGRMIGSKPIYVALA 370
>gi|189203851|ref|XP_001938261.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985360|gb|EDU50848.1| nuclear localization sequence-binding protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 475
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 16/186 (8%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEEP + L+V N+ + D L F+ FG ++ V + ETG ++G GY+
Sbjct: 209 SKVEEPAAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRVITDRETGRAKGFGYVE 268
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSI-----DMN--SRTRNAEALISPPKKIFVYE 200
+ A A + ++ GR++ V FS D N +R SPP
Sbjct: 269 FANAADAAKAQKEMHEYELDGRQLNVDFSTPRAKPDANGGARANKYGDKRSPPS------ 322
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ L++GN+S+ E ++ F +G++ + DR + FG++ FSS E AA
Sbjct: 323 --NTLFLGNVSFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAA 380
Query: 261 L-SLNG 265
L +LNG
Sbjct: 381 LEALNG 386
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 181 SRTRNAEALISPPKKIFVYESP------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
S+ R AE + P K E P L+VGN+SW + + LR F FG +V RV
Sbjct: 193 SKKRKAEEVAEPIVKKSKVEEPAAEEGVKNLFVGNMSWNIDEDWLRREFEGFGEIVGCRV 252
Query: 235 LHDRKGQTTRVFGFISF 251
+ DR+ + FG++ F
Sbjct: 253 ITDRETGRAKGFGYVEF 269
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 102 LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ N+ SF+ S + E+F +G++ V + + +TG +G GY+ S A A+
Sbjct: 325 LFLGNV--SFECSNESIQEVFAEYGSITRVSLPTDRDTGALKGFGYVDFSSQQEATAALE 382
Query: 160 ALDGSDVGGREMRVRFS 176
AL+G D+GGR +R+ ++
Sbjct: 383 ALNGQDIGGRAIRIDYA 399
>gi|149244172|ref|XP_001526629.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449023|gb|EDK43279.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 510
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D L + F+ G V+ V TG SRG GY+ + +A+ A+ +
Sbjct: 262 LFVGRLSWNIDDDWLKKEFEHLGDVIGARVIMERATGKSRGYGYVDFKTKAAAEKALAEM 321
Query: 162 DGSDVGGREMRVRFSI--------DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
G ++ GR + + S + R R SPP L++GNLS+
Sbjct: 322 QGKEIDGRPINLDMSTGKPHASKANAGDRARQFGDSQSPPSDT--------LFIGNLSFN 373
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L FG +GTV+S RV Q + FG++ FSS E AAL +LNG
Sbjct: 374 ANRDSLFEIFGEYGTVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEALNG 426
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + L E+F +GTV+S V +P+T +G GY+ S++ AK A+ AL
Sbjct: 365 LFIGNLSFNANRDSLFEIFGEYGTVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAL 424
Query: 162 DGSDVGGREMRVRFS 176
+G + R R+ FS
Sbjct: 425 NGEYIENRPCRLDFS 439
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 186 AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRV 245
AE +P E L+VG LSW + + L+ F G V+ ARV+ +R +R
Sbjct: 243 AEETAAPTSPAVAEEEGATLFVGRLSWNIDDDWLKKEFEHLGDVIGARVIMERATGKSRG 302
Query: 246 FGFISFSS 253
+G++ F +
Sbjct: 303 YGYVDFKT 310
>gi|115450405|ref|NP_001048803.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|25446691|gb|AAN74838.1| Unknown protein [Oryza sativa Japonica Group]
gi|108705923|gb|ABF93718.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113547274|dbj|BAF10717.1| Os03g0123200 [Oryza sativa Japonica Group]
gi|125584746|gb|EAZ25410.1| hypothetical protein OsJ_09226 [Oryza sativa Japonica Group]
gi|215694916|dbj|BAG90107.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++ LP + +E+ E+F+ FG + S+++SR P++G RG +++ S N +
Sbjct: 74 KVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFRGLAFVSFES-NEVVMKSLE 132
Query: 161 LDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
LDG +G R MRV R + S+ + + PKK + YVGNL W V DL
Sbjct: 133 LDGFKIGNRFMRVERCRLAAGSKRKRTVEFQTDPKKA---DGCLSAYVGNLKWDVTETDL 189
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
R+ F + S R +++ +R F + F D + A+ +N
Sbjct: 190 RDFFKSL-KISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMN 233
>gi|398409740|ref|XP_003856335.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
gi|339476220|gb|EGP91311.1| hypothetical protein MYCGRDRAFT_102491 [Zymoseptoria tritici
IPO323]
Length = 505
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 88/179 (49%), Gaps = 6/179 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V N+ + D L F+ FG + V + + ++G S+G GY+ +AK A+ A
Sbjct: 244 LFVGNISWNVDEEWLTREFEEFGELAGVRIITDRDSGRSKGFGYVEFSDPQNAKKALEAK 303
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF--VYESPHK-LYVGNLSWAVKPED 218
+G+++ GRE+R+ FS + A + F +P L+VGN+S+
Sbjct: 304 NGAELDGRELRLDFSTPRTNDGPGAGNKSNDRAARFGDTTNAPAATLFVGNISFDADENA 363
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277
+ +F GT+ + R+ DR+ + FG++ SS E AA + ++ +A +P+
Sbjct: 364 ITEYFQEHGTIKAVRLPTDRETGAPKGFGYVEMSSIEEAQAAFT---ALQGADIAGRPI 419
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETG 138
GN+ +D ++ + A L+V N+ SFD E + E F+ GT+ +V + + ETG
Sbjct: 329 GNKSNDRAARFGDTTNAPAATLFVGNI--SFDADENAITEYFQEHGTIKAVRLPTDRETG 386
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
+G GY+ M SI A+ A AL G+D+ GR +R+ ++ +
Sbjct: 387 APKGFGYVEMSSIEEAQAAFTALQGADIAGRPIRLDYAAE 426
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N+ +E E+FK FG V S+ +S + E G SRG G++ + A A+ L
Sbjct: 249 VYVKNIDPEISEAEFEELFKKFGNVTSLSLSVD-ENGKSRGFGFVNYENHEDAARAVEEL 307
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ R++ V + + R K K+ Y + L+V NL + E L
Sbjct: 308 HDTEYKDRKLYVCRAQKKHEREEELRKQYEQAKLDKLNKYNGIN-LFVKNLDDDIDDERL 366
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F +GT+ SA+++ D G+ ++ FGF+ FSS E A++ + V+ +PL+
Sbjct: 367 RQEFSIYGTITSAKIMVDDNGK-SKGFGFVCFSSPDEATKAIT---EMNQRMVSGKPLY 421
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 79/180 (43%), Gaps = 21/180 (11%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S V ++ + LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 58 NSGVPVSQNNSNSASLYVGELDPSVTEAMLFELFNNIGAVASIRVCRDAVTRRSLGYAYV 117
Query: 147 TMG-----SINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES 201
++ + + A+ L+ + + G+ R+ +S S +
Sbjct: 118 NFHNSSDVNLLTGERALDELNYTLIKGKPCRIMWSQRDPSLRKTGTG------------- 164
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+++ NL ++ + L + F FG+++S +V D G ++ +GF+ + + +AA+
Sbjct: 165 --NVFIKNLDASIDNKALHDTFTAFGSILSCKVAVDELG-NSKGYGFVHYKTSESAEAAI 221
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ +P G S+G G++ +A AI
Sbjct: 213 ANIFIKNLDKSIDNKALHDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIE 271
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E SP F + +YV NL+ +DL
Sbjct: 272 KLNGMLMNDKKVYV------GPFVRKQERDNSPGSVKF-----NNVYVKNLAETTTEDDL 320
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ FG+FGT+ S V+ D G+ ++ FGF++F S E A+ LNG
Sbjct: 321 KEIFGKFGTITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNG 366
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FGT+ SV V R+ + G S+ G++ S + A A+ L
Sbjct: 306 VYVKNLAETTTEDDLKEIFGKFGTITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 364
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + +M + + + L K Y++ + LY+ NL V
Sbjct: 365 NGKKFSDKEWYVGRAQKKSEREMELKEKFEKNLQEAADK---YQNTN-LYLKNLDDTVDD 420
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E LR F FGT+ S +V+ D G +R GF++F S + AL+ + + V +P
Sbjct: 421 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSADDASRALA---EMNNKMVGNKP 476
Query: 277 LF 278
L+
Sbjct: 477 LY 478
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 127 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR +R+ +S S ++ A I ++ NL ++ + L +
Sbjct: 187 NFTPINGRPIRIMYSNRDPSLRKSGTANI---------------FIKNLDKSIDNKALHD 231
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG +
Sbjct: 232 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGML 277
>gi|303286617|ref|XP_003062598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456115|gb|EEH53417.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 380
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NL D L +F FG V S V R+ T SRG G++ + SA++AI
Sbjct: 118 NVYVKNLAEDVDELTLKSVFDAFGVVESCCVIRDVSTNTSRGFGFVKFDGVQSAESAIKE 177
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ G V GR + V+F+ +S T A + +P I+V P + W +LR
Sbjct: 178 MHGKSVRGRTLEVKFANSDSSATTAAAGIGTPSDNIYVKGLPPR-------W--TEVELR 228
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++ R+LH TT I F S++ A ++ NG V
Sbjct: 229 AFFKVFGAIIECRLLHASG--TTTAGALIRFASAEQAASAVVTANGRV 274
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E R +P E +Y+ N D L +F +G LSV+V ++ +G S+ G+++
Sbjct: 179 EAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKRFGFVSF 237
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY-ESPHKLYV 207
S +AKNA+ ++G D+ G+ + V + R + + KK + KLY+
Sbjct: 238 DSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYI 297
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
NL + E LR F FG++ +V+ + GQ ++ FG I F S
Sbjct: 298 KNLDDTIDDETLRKEFSVFGSICRVKVMQE-AGQ-SKGFGLICFFS 341
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L E F PFG ++S +V + E S+G G++ +A AI +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEM 157
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + + V RF + + R AE P + VY + N + E LR
Sbjct: 158 NGKLLRDSTLFVARFK---SRKDREAELREKPAEFTNVY-------IKNFGDDMDDESLR 207
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
+ F ++G +S +V+ D G++ R FGF+SF S A ++A +NG
Sbjct: 208 SVFSKYGQTLSVKVMKDASGKSKR-FGFVSFDSHKAAKNAVEDMNG 252
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 18/186 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ + S G GY+ + A
Sbjct: 5 TKYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALETMNFDLIKGKSIRLMWS------QRDACLRKSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273
+ L HF FG ++S++V+ D +G ++ +GF+ + D A+ +NG + +
Sbjct: 110 DNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTL 167
Query: 274 FQPLFP 279
F F
Sbjct: 168 FVARFK 173
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D L E+F +G LSV+V + G S+G G+++ S +AK A+ +
Sbjct: 291 VYVKNFGDDMDDERLKEVFSKYGKTLSVKVMTDS-GGKSKGFGFVSFDSHEAAKKAVEEM 349
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLR 220
+G DV G+ + V + + R + + K+ F KLY+ NL + E L
Sbjct: 350 NGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLW 409
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FG++ +++ R+ ++ FG I FSS E A++ +NG + + +PL+
Sbjct: 410 REFSSFGSISRVKIM--REEGRSKGFGLICFSSPEEATKAMAEMNGRI----LGSKPLY 462
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Query: 95 SRARPCELYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++ R LYV +L S D++E L + F G VLS+ + R+ T S G Y+ +
Sbjct: 104 AKYRQASLYVGDL--SADVTEDLLFKKFSAVGPVLSIRICRDLVTRRSLGYAYVNFLKLA 161
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
A+ A+ ++ + G+ +R+ +S R+A S +F+ NL
Sbjct: 162 DAQKALDTMNFDMIKGKPIRLMWS------QRDAYLRKSGIGNVFIK---------NLDK 206
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
++ + L HF FG ++S++V+ D +G +R + F+ F + D A+ +NG +
Sbjct: 207 SIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQNAADRAIEEMNGAL 260
Score = 40.4 bits (93), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR-------SRARPCE---LYVCNL 107
E A +E+NGKD VG + + E + R R C+ LY+ NL
Sbjct: 340 EAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQLKQERFRRCQGMKLYIKNL 399
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L F FG++ V++ R E G S+G G + S A A+ ++G +G
Sbjct: 400 DDTIDDEKLWREFSSFGSISRVKIMR--EEGRSKGFGLICFSSPEEATKAMAEMNGRILG 457
Query: 168 GREMRV 173
+ + +
Sbjct: 458 SKPLYI 463
>gi|345491945|ref|XP_001599982.2| PREDICTED: nucleolar protein 12-like [Nasonia vitripennis]
Length = 613
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEV-----------------SRNPETGISRGCG 144
+YV N+P+ + + ++F+PFG + S+ V ++ +S
Sbjct: 334 IYVGNVPKEMTVKTIKKLFRPFGEIDSIRVRGVVAEDSRMSAKVATITKKMHPKVSTVYV 393
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
Y+ SAK+A+ L+G +G +RV S T+N + ++
Sbjct: 394 YVAFKEEQSAKDAL-KLNGHKLGENTLRVDLS------TKNKD-----------HDQKRA 435
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
+++GN+ + + +++R HF G + S R++ DRK +R G+++F + AL LN
Sbjct: 436 VFLGNIPFDITEDEVRKHFDSCGKIESVRIVKDRKSGLSRGIGYVNFENQDSVTLALELN 495
Query: 265 GT 266
GT
Sbjct: 496 GT 497
>gi|295672357|ref|XP_002796725.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283705|gb|EEH39271.1| 28 kDa ribonucleoprotein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 474
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 95/190 (50%), Gaps = 11/190 (5%)
Query: 85 DDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D++ V ++R P E L++ NL + D L F+ FG + V + + ++G S+
Sbjct: 213 DEEEVVAPKKTRVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSGRSK 272
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--EALISPPKKIFVY 199
G GY+ + A A A +++ GR++ V F+ N+R+ A + S +
Sbjct: 273 GFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFA---NARSNAAPRDRAQSRAQNFGDQ 329
Query: 200 ESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
+SP L++GN++++ + F +G+++ R+ D + + FG++ FSS D
Sbjct: 330 KSPESDTLFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 389
Query: 257 RDAALSLNGT 266
R A SLNG+
Sbjct: 390 RSAFESLNGS 399
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+ S D S + E F +G++L V + +PE+G +G GY+ SI+ A++A +L
Sbjct: 337 LFIGNIAFSADESMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 396
Query: 162 DGSDVGGREMRVRFSI 177
+GS++ GR MR+ FS
Sbjct: 397 NGSELAGRAMRLDFST 412
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ + E +++P K L++GNLSW V E LR+ F FG + R++ DR
Sbjct: 210 KAEDEEEVVAPKKTRVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDSG 269
Query: 242 TTRVFGFISFSS 253
++ FG++ F++
Sbjct: 270 RSKGFGYVEFTN 281
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 9/179 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G LSV+V + +G S+G G+++ S +AK A+ +
Sbjct: 291 VYIKNFGDDMDDERLKEVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 349
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + + R + + K+ F KLY+ NL + E L
Sbjct: 350 NGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNLDDTIDDEKLW 409
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FG++ +++ R+ ++ FG I FSS E A++ +NG + + +PL+
Sbjct: 410 REFSSFGSISRVKIM--REEGRSKGFGLICFSSPEEATKAMAEMNGRI----LGSKPLY 462
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L + F G VLS+ + R+ T S G Y+ + A
Sbjct: 104 AKYRQASLYVGDLHADVTEDLLFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLKLADA 163
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F+ NL ++
Sbjct: 164 QRALDTMNFDTIKGKPIRLMWS------QRDAYLRKSGIGNVFIK---------NLDRSI 208
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G +R + F+ F + D A+ +NG +
Sbjct: 209 DNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQIAADRAIEEMNGAL 260
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR-------SRARPCE---LYVCNL 107
E A +E+NGKD VG + + E + R R C+ LY+ NL
Sbjct: 340 EAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQLKQERFRRCQGMKLYIKNL 399
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D +L F FG++ V++ R E G S+G G + S A A+ ++G +G
Sbjct: 400 DDTIDDEKLWREFSSFGSISRVKIMR--EEGRSKGFGLICFSSPEEATKAMAEMNGRILG 457
Query: 168 GREMRV 173
+ + +
Sbjct: 458 SKPLYI 463
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 12/193 (6%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E +S+AR + LY+ N P D +L EMF FG + S V ++ E G S+G G++
Sbjct: 181 ERKSQARKVKFNNLYIKNFPPETDNEKLKEMFNEFGEIKSACVMKDSE-GKSKGFGFVCF 239
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLY 206
+ A+NA+ + G ++ GR + + R + + + + Y LY
Sbjct: 240 LDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEELKQRLEKQRAERQSSYMLNVNLY 299
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL + + L F G++ SA+V+ D + ++ FGF+ F++ + A++ +NG
Sbjct: 300 VKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR-SKGFGFVCFANPEQAARAVTDMNG 358
Query: 266 TVESHTVAFQPLF 278
T+ + +PL+
Sbjct: 359 TI----IGSKPLY 367
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 102 LYVCNL-PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LYV +L PR D S L F G VLS V R+ T S G GY+ A+ A+
Sbjct: 15 LYVGDLHPRVSD-SALQAKFSEIGPVLSARVCRDLATRHSLGYGYVNFEDPKHAEQALEV 73
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ + GR +R+ +S S ++ + +++ NL +++ ++L
Sbjct: 74 LNYESLMGRPIRIMWSQRDPSLRKSGKG---------------NIFIKNLDKSIEQKELY 118
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AER 257
+ F FG ++S +++ D GQ ++ +GF+ F + AER
Sbjct: 119 DTFSFFGRILSCKIVMDENGQ-SKGYGFVHFEKEECAER 156
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG+V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG+V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|337278094|ref|YP_004617565.1| RNA-binding protein [Ramlibacter tataouinensis TTB310]
gi|334729170|gb|AEG91546.1| Candidate RNA-binding protein [Ramlibacter tataouinensis TTB310]
Length = 95
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 53/88 (60%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP SF SE+ + F FGTV S +V + +TG S+G G++ MGS A++AI
Sbjct: 4 KLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAIQG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEA 188
+ G GGR++ V + M RT + A
Sbjct: 64 MHGQQHGGRDLVVNEARPMEPRTGGSGA 91
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
+KLYVGNL ++ +++ F +FGTV SA+V+ DR ++ FGF+ S AE +A+
Sbjct: 3 NKLYVGNLPYSFGDSEMQQAFSQFGTVGSAKVVMDRDTGRSKGFGFVEMGSAAEAQSAI 61
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 88/163 (53%), Gaps = 7/163 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D +L E+F+ +G ++S +V + + S+ G+++ + +AK A+ AL
Sbjct: 192 VYVKNLSEETDDEKLREIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEAL 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G+D G+ + R + I+ + + I ++I Y+ + L+V NL + +
Sbjct: 252 NGNDNAGKILYVGRAQTKIERQAELKEKFERIR-KERINRYQGVN-LFVKNLDDNIDDKR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
LR F +FGT+ SA+V+ + ++ FGF+ FSS E A+
Sbjct: 310 LRKEFAQFGTITSAKVMTE--NGRSKGFGFVYFSSPEEATKAI 350
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 14/175 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ L +S D L + F FG + S ++ + E G SRG G++ + +A+ AI +
Sbjct: 100 VFIKKLDKSIDNKALYDTFSAFGNISSCKIVCD-EHG-SRGYGFVHFETDEAARIAIEKV 157
Query: 162 DGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G + G+++ V RF SR E L +K + +YV NLS E LR
Sbjct: 158 NGMLLNGKKVFVGRFM----SRRERLEVLDLGMRKF------NNVYVKNLSEETDDEKLR 207
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAF 274
F +G ++SA+V+ D + ++ FGF+SF + +A + A +LNG + + +
Sbjct: 208 EIFELYGKIISAKVMIDDSSRKSKQFGFVSFENPEAAKKAVEALNGNDNAGKILY 262
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L L + F G VLSV V R+ T S G Y+ A+ A+ +
Sbjct: 12 LYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDTM 71
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ + R+ S +F+ + L ++ + L +
Sbjct: 72 NFDIIKGRPIRITWY------QRDPSLRKSGVGNVFIKK---------LDKSIDNKALYD 116
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG + S +++ D G +R +GF+ F +D A R A +NG +
Sbjct: 117 TFSAFGNISSCKIVCDEHG--SRGYGFVHFETDEAARIAIEKVNGML 161
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 18/126 (14%)
Query: 64 EEAVVVEDEINGKDNVGG--------NEVDDDSSVEEPRSRARP--------CELYVCNL 107
E A + +NG DN G +++ + ++E R R L+V NL
Sbjct: 242 EAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKFERIRKERINRYQGVNLFVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
+ D L + F FGT+ S +V E G S+G G++ S A AI+ ++ +
Sbjct: 302 DDNIDDKRLRKEFAQFGTITSAKVM--TENGRSKGFGFVYFSSPEEATKAIVEMNEKIIE 359
Query: 168 GREMRV 173
R + V
Sbjct: 360 ARPLYV 365
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL + D L + F FG +LS +V+ + +G S+G G++ S +A+NAI
Sbjct: 100 ANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATD-ASGQSKGYGFVQFDSEEAAQNAID 158
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G V +++ V + R ++ + + K + ++V NL+ + E+L
Sbjct: 159 KLNGMLVNDKQVYVGHFL----RKQDRDGALYSIKF-------NNVFVKNLAESTTDEEL 207
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
+N F G + SA V+ D G+ ++ FGF++F S+D A +LNG
Sbjct: 208 KNIFAEHGAITSAVVMRDADGK-SKCFGFVNFESADDAAKAVEALNG 253
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 4/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S EL +F G + S V R+ + G S+ G++ S + A A+ AL
Sbjct: 193 VFVKNLAESTTDEELKNIFAEHGAITSAVVMRDAD-GKSKCFGFVNFESADDAAKAVEAL 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G + G E V + + R + K V + LY+ NL ++ E L+
Sbjct: 252 NGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKFQGLNLYIKNLDDSINDEKLK 311
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG + S +V+ D G +R GF++FS+ E AL+ +NG +
Sbjct: 312 ELFSDFGAITSCKVMRDPSG-ISRGSGFVAFSTPEEASRALAEMNGKM 358
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S++E + + LY+ NL S + +L E+F FG + S +V R+P +GISRG G++
Sbjct: 281 EQSMKETVDKFQGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDP-SGISRGSGFV 339
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ ++G + + + V + R +A S
Sbjct: 340 AFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFS 384
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
P LYVG+L + V L + F + G VVS RV D + + +G++++S+ +DAA
Sbjct: 11 PTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSN--PQDAAR 68
Query: 262 SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGV 300
+L+ + F PL N + + +++ PS R G+
Sbjct: 69 ALD------VLNFTPL--NNKPIRIMYSHRDPSIRKSGM 99
>gi|389633057|ref|XP_003714181.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|351646514|gb|EHA54374.1| nuclear localization sequence binding protein [Magnaporthe oryzae
70-15]
gi|440473688|gb|ELQ42470.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae Y34]
gi|440486239|gb|ELQ66126.1| 28 kDa ribonucleoprotein [Magnaporthe oryzae P131]
Length = 486
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 1/169 (0%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+P L+V NL + D + L E FK GTV S V + E+G S+G GY+ + A+ A
Sbjct: 237 KPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKA 296
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
G+ + GRE++V FS + + +A + V L+VGNL + +
Sbjct: 297 HGEKQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADED 356
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ F V S R+ +++ + FG+++F+S + +A LNG
Sbjct: 357 SVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP D + F V S+ + E+G +G GY+T S+ AK+A L
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 162 DGSDVGGREMRVRFSI 177
+G + GR R+ +S
Sbjct: 404 NGQSINGRNCRLDYST 419
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 111/248 (44%), Gaps = 20/248 (8%)
Query: 42 KLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEV---------DDDSSVEE 92
K+++ + GF V DE A D ING + G EV D S +EE
Sbjct: 158 KIATDEVTGNSKGFGFVHFESDEAAREAIDAINGM-LLNGQEVYVAPHVSRKDRQSKLEE 216
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
++A +Y+ N+ E E FK V SV + ++ E G RG G++ +
Sbjct: 217 --AKANFTNVYIKNISLETPEQEFEEFFKKVAPVTSVHLEKDSE-GKLRGFGFVNYETHA 273
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNL 210
A A+ L+G + G+++ V + R + K K+ Y+ + L++ NL
Sbjct: 274 GAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLEKMEKYQGVN-LFIKNL 332
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
++ E LR F FGT+ S +V+ G+ ++ FGF+ FS+ E A++
Sbjct: 333 DDSIDDERLREEFSPFGTITSVKVMTTENGK-SKGFGFVCFSTPEEATKAITEKN---QQ 388
Query: 271 TVAFQPLF 278
VA +PL+
Sbjct: 389 IVAGKPLY 396
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + TG S+G G++ S +A+ AI A+
Sbjct: 130 IFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAI 189
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K F +Y+ N+S ++
Sbjct: 190 NGMLLNGQEVYVAPHVSRKDR----QSKLEEAKANFT-----NVYIKNISLETPEQEFEE 240
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270
F + V S + D +G+ R FGF+++ + A A+ LNG VE H
Sbjct: 241 FFKKVAPVTSVHLEKDSEGK-LRGFGFVNYETHAGAAKAVEELNG-VEFH 288
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 42 LYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDYEAGRQAIEKL 101
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S S + I ++ NL + + L +
Sbjct: 102 NYTPIKGQPCRIMWSQRDPSLRKKGSGNI---------------FIKNLHADIDNKALHD 146
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S ++ D ++ FGF+ F SD A R+A ++NG +
Sbjct: 147 TFSVFGNILSCKIATDEVTGNSKGFGFVHFESDEAAREAIDAINGML 193
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ S E + + L++ NL S D L E F PFGT+ SV+V E G S+G G++
Sbjct: 312 EQSKLEKMEKYQGVNLFIKNLDDSIDDERLREEFSPFGTITSVKV-MTTENGKSKGFGFV 370
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ A AI + V G+ + V
Sbjct: 371 CFSTPEEATKAITEKNQQIVAGKPLYV 397
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ ++F PFG + S+ + ++ + G S+G G
Sbjct: 220 DRESKFEE--MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ SA+V+ D G+ ++ FGF+ F++ E A++
Sbjct: 337 N-LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGK-SKGFGFVCFTTPEEATKAIT 394
Query: 263 LNGTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 395 ---EMNTRMINGKPLY 407
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 87 DSSVEEPRSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
D S EE + E LYV L S + + L E+F P G V S+ V R+ + S G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+ + AI L+ + + GR R+ +S S R+ + I
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNI------------ 142
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
++ NL A+ + L + F FG ++S +V D GQ ++ FGF+ +
Sbjct: 143 ---FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQ-SKCFGFVHY 187
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL + D +L E FKPFGT+ S +V + E G S+G G++ +
Sbjct: 328 EKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ + G+ + V + + R E I
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQ 426
>gi|268564135|ref|XP_002647098.1| C. briggsae CBR-MSI-1 protein [Caenorhabditis briggsae]
Length = 318
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 18/193 (9%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131
E++G + N DD S P ++++ L L + F FG V V
Sbjct: 18 EVDGHEEARLNADSDDGS----HGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMV 73
Query: 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
R+P T +RG G++T +S + A D ++ G+++ + + ++ + L++
Sbjct: 74 MRDPATKRARGFGFITFVEPSSVDKVLNARD-HELDGKKIDPKVAFPKRTQAK----LVT 128
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
KK+F+ G LS ED++ +F +G V A +++D+ Q R FGF++F
Sbjct: 129 KTKKVFI---------GGLSATSTLEDMKQYFESYGKVEDAMLMYDKATQRHRGFGFVTF 179
Query: 252 SSDAERDAALSLN 264
SD D ++
Sbjct: 180 DSDEVADKVCEIH 192
>gi|326928626|ref|XP_003210477.1| PREDICTED: heterogeneous nuclear ribonucleoprotein A0-like
[Meleagris gallopavo]
Length = 190
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L + L E F +GT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
A V G + ++ ++ SR +A K + KL+VG L V DL
Sbjct: 66 AASPHAVDGNSVELKRAV---SREDSA--------KPGAHAKVKKLFVGGLKGDVGEGDL 114
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
HF +FG V A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 115 VQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV 174
Query: 279 P 279
P
Sbjct: 175 P 175
>gi|50305507|ref|XP_452713.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641846|emb|CAH01564.1| KLLA0C11495p [Kluyveromyces lactis]
Length = 445
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 83 EVDDD---SSVEEPRSR--ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET 137
+ DDD S ++P++ P ++V L S D L F+P G V+S V T
Sbjct: 174 KADDDEEKSESKKPKTELAGEPATIFVGRLSWSIDDEWLKTEFEPIGGVISARVMYERGT 233
Query: 138 GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS---RTRNAEALISPPK 194
SRG GY+ + A+ AI + G ++ GR + S + R A+ P
Sbjct: 234 DRSRGYGYVDFEDKSYAEKAIKEMHGKEIDGRPINCDMSTSKPAGAPRDDRAKKFGDVPS 293
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254
E L++GNLS+ ++L FG++G +VS R+ + + + FG++ +
Sbjct: 294 -----EPSDTLFLGNLSFEADRDNLYEIFGKYGEIVSVRIPTHPETEQPKGFGYVQY--- 345
Query: 255 AERDAALSLNGTVESHTVAFQPL 277
G++E T AF+ L
Sbjct: 346 ----------GSIEDATKAFEGL 358
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRAR----------PCE----LYVCNLPRSFDISELL 117
E++GK+ + G ++ D S +P R P E L++ NL D L
Sbjct: 256 EMHGKE-IDGRPINCDMSTSKPAGAPRDDRAKKFGDVPSEPSDTLFLGNLSFEADRDNLY 314
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
E+F +G ++SV + +PET +G GY+ GSI A A L G + R +R+ +SI
Sbjct: 315 EIFGKYGEIVSVRIPTHPETEQPKGFGYVQYGSIEDATKAFEGLQGEYINNRPVRLDYSI 374
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 37/230 (16%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGK-DNVGGNEVDDDSSVE-EPRSR----ARPCELYVCNL 107
G+ V V +E A + +NGK N G ++ D + E R ++ +Y NL
Sbjct: 160 GYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQHIGGASKFTNVYTKNL 219
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG---S 164
P+ F +L +F PFGT+ S V ++ + G S+ G++ A+ A+ L+G S
Sbjct: 220 PKEFTDDDLCRVFAPFGTITSAVVMKDGD-GESKCFGFVNYEKTEYAEEAVEKLNGKIIS 278
Query: 165 DVG---GR---------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
DV GR E++ +F + N + R ++ LY+ NL
Sbjct: 279 DVALYVGRAKRKQERQAELKEKFDKERNDKIRKSKGC--------------NLYLKNLDC 324
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
++ E LRN FGRF + + +V+ D +G+ ++ FGF+ F++ + A+S
Sbjct: 325 SIDDEYLRNLFGRFDDIGTCKVMVDSEGR-SKGFGFVLFTTIEAANKAVS 373
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +LL++F V+SV + + TG S G Y+ S AK A+
Sbjct: 33 VYVGNLEASVTEQQLLDLFSQAVPVVSVRICDDKVTGRSLGYAYVNFHSHEDAKVALEYF 92
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +RV FS + R+ A L++ NL + + L
Sbjct: 93 NFTVVNGKSIRVMFSNRDPTLRRSGAA---------------NLFIKNLEPNIVAKSLHQ 137
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F RFG ++S +V D G+ ++ +GF+ F S ++ +DA +LNG +
Sbjct: 138 MFSRFGIILSCKVATDLNGK-SKGYGFVQFVSEESAKDAMNALNGKL 183
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ L++ NL + L +MF FG +LS +V+ + G S+G G++ S SAK
Sbjct: 115 RSGAANLFIKNLEPNIVAKSLHQMFSRFGIILSCKVATD-LNGKSKGYGFVQFVSEESAK 173
Query: 156 NAIIALDG--SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
+A+ AL+G ++ G+++ V I R A +Y NL
Sbjct: 174 DAMNALNGKLANGNGKQLYVDLFIRREERQHIGGA-----------SKFTNVYTKNLPKE 222
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTV 272
+DL F FGT+ SA V+ D G+ ++ FGF+++ ++ +A LNG + S
Sbjct: 223 FTDDDLCRVFAPFGTITSAVVMKDGDGE-SKCFGFVNYEKTEYAEEAVEKLNGKIISDVA 281
Query: 273 AF 274
+
Sbjct: 282 LY 283
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 85/182 (46%), Gaps = 33/182 (18%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D +L E +G++LS ++ + S+G G+++ +A + + +
Sbjct: 194 VFIKNLAEDVDDGKLAEFGGQYGSILSAKIMFDDSK--SKGFGFISFEDHEAANDFVKTI 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+GS+V GR E++ RF R+ + + LY
Sbjct: 252 NGSEVNGRTLYAGRAQKKAERAAELKARFEALKQERSTRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL + E LR F R+GT+ SA+V+ D K ++ FGF+ FSS E A++ +NG
Sbjct: 298 IKNLDDEIDDERLRKEFSRYGTITSAKVMSDDKA-NSKGFGFVCFSSPEEATKAVTEMNG 356
Query: 266 TV 267
+
Sbjct: 357 RI 358
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ +++ NL ++ + + +
Sbjct: 73 NFDTLKGRPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKAMYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G + +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGHILSCKVVTDENG-VNKGYGFVHFETQEAANKAIEKVNGML 163
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 5/168 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F +G +SV+V + TG S+G G+++ S +A+ A+ +
Sbjct: 192 IYIKNFGDDMDDKRLEEVFSKYGKTVSVKVMTDS-TGKSKGFGFVSFYSHEAAQKAVEEM 250
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK-IFVYESPHKLYVGNLSWAVKPEDLR 220
+G D+ G+ + V + R + + K+ F KLY+ NL + E LR
Sbjct: 251 NGKDINGQLLFVGRAQKKAERQAELKQMFEQQKQERFRRCQGVKLYIKNLDDTIDDEKLR 310
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG++ +V+ + ++ FG I FSS E A++ +NG +
Sbjct: 311 REFSSFGSISRVKVMKEEG--RSKGFGLICFSSPEEATRAMTEMNGRI 356
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTV---LSVEVSRNPETGISRGCGYLTMGSI 151
++ R LYV +L D++E L +FK F TV LS+ + R+ T S G Y+ +
Sbjct: 5 AKYRQASLYVGDLHA--DVTEDL-LFKKFSTVGPVLSIRICRDLVTRRSLGYAYVNFLQL 61
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
A+ A+ ++ + G+ +R+ +S R+A S +F + NL
Sbjct: 62 ADAQKALDTMNFDTIKGKSIRLMWS------QRDAYLRKSGIGNVF---------IKNLD 106
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
++ + L HF FG ++S++V+ D +G +R + F+ F + D A+ +NG +
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG--SRGYAFVHFQNQMAADRAIEEMNGAL 161
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 91 EEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
++ + R R C+ LY+ NL + D +L F FG++ V+V + E G S+G G +
Sbjct: 281 QQKQERFRRCQGVKLYIKNLDDTIDDEKLRREFSSFGSISRVKVMK--EEGRSKGFGLIC 338
Query: 148 MGSINSAKNAIIALDGSDVGGREMRV 173
S A A+ ++G +G + + +
Sbjct: 339 FSSPEEATRAMTEMNGRILGSKPLNI 364
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D + + F FG +LS +V+++ ETG S+G G++ + +A A+ +
Sbjct: 102 VFIKNLDKSIDNKAIYDTFSAFGNILSCKVAQD-ETGSSKGFGFVHFETQEAADEAMAKV 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V + + R A + +K F +YV N + LR+
Sbjct: 161 NGMMLNGKKVYVGRFVPRSERL----AAMGEAQKRFT-----NIYVKNFGDKWDDDKLRD 211
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F ++G VVSA+V+ D G +R FGF+S+
Sbjct: 212 FFEKYGKVVSAKVMTDDMGH-SRGFGFVSY 240
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 12/188 (6%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R +YV N +D +L + F+ +G V+S +V + + G SRG G+++ +SA
Sbjct: 188 AQKRFTNIYVKNFGDKWDDDKLRDFFEKYGKVVSAKVMTD-DMGHSRGFGFVSYEEPDSA 246
Query: 155 KNAIIALDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLS 211
A ++ +V GR + V + R +A K +I Y+ + LYV NL
Sbjct: 247 GKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKFEKIKQERIQRYQGVN-LYVKNLD 305
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESH 270
+ E LR F +FGT+ S++V+ + ++ FGF+ FSS E A++ +NG +
Sbjct: 306 STIDEEILRKEFSQFGTITSSKVMTENG--RSKGFGFVCFSSPEEATKAVTEMNGRI--- 360
Query: 271 TVAFQPLF 278
V +PL+
Sbjct: 361 -VVSKPLY 367
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 99 PC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
PC LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A
Sbjct: 10 PCASLYVGDLDPDITEAMLYEKFSPAGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERA 69
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ ++ + G+ MR+ +S S ++ +++ NL ++ +
Sbjct: 70 LDTMNFDTIKGKPMRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNK 114
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
+ + F FG ++S +V D G +++ FGF+ F + D A++ +NG +
Sbjct: 115 AIYDTFSAFGNILSCKVAQDETG-SSKGFGFVHFETQEAADEAMAKVNGMM 164
>gi|89272470|emb|CAJ83096.1| OTTXETP00000006403 [Xenopus (Silurana) tropicalis]
Length = 389
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 27/186 (14%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V +L ++ F PFG + V ++ TG S+G G+++ + A+NAI+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 161 LDGSDVGGREMRVRFSI----------DMNSRTRNAEALI--SPPKKIFVYESPHKLYVG 208
+ G +GGR++R ++ + N++ E ++ S PK V Y G
Sbjct: 174 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTV-------YCG 226
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG-T 266
+ + + +R FG FG ++ RV ++ + FI FS+ D+ A +S+NG T
Sbjct: 227 GIGSGLTEQLMRQTFGVFGQILEIRVFPEKG------YSFIRFSTHDSAAHAIVSVNGTT 280
Query: 267 VESHTV 272
+E H V
Sbjct: 281 IEGHVV 286
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI A+
Sbjct: 147 VFIKNLDGAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETAEAANNAIKAV 205
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ V ++ R
Sbjct: 206 NGMLLNEKKVFVGHHIPKKDRMSKFEEM----KANFT-----NVYVKNIDLEVTDDEFRE 256
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F ++G + SA + HD + +R FGF++F
Sbjct: 257 LFEKYGQITSASLAHDNETGKSRGFGFVNF 286
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 61 VVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120
+++E+ V V I KD + S EE +A +YV N+ E E+F
Sbjct: 209 LLNEKKVFVGHHIPKKDRM--------SKFEE--MKANFTNVYVKNIDLEVTDDEFRELF 258
Query: 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180
+ +G + S ++ + ETG SRG G++ SA A+ L+ D G+++ V + +
Sbjct: 259 EKYGQITSASLAHDNETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKH 318
Query: 181 SRT----RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLH 236
R + EA + +K Y+ + LYV NL V E LR+ F FGT+ SA+V+
Sbjct: 319 EREEELRKQYEAARA--EKQSKYQGVN-LYVKNLHDDVDDEKLRDMFAPFGTITSAKVMR 375
Query: 237 D 237
D
Sbjct: 376 D 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P + LYV L S + L E+F G V S+ V R+ T S G Y+ S +
Sbjct: 50 PSAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSD 109
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSW 212
+ A+ L+ + + G+ R+ +S + + + +++ NL
Sbjct: 110 DGEKALEELNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDG 154
Query: 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHT 271
A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A ++NG + +
Sbjct: 155 AIDNKALHDTFAAFGNILSCKVAQDENG-NSKGYGFVHYETAEAANNAIKAVNGMLLNEK 213
Query: 272 VAF 274
F
Sbjct: 214 KVF 216
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 16/97 (16%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVG----------GNEVDDD------SSVEEPRSRA 97
GF V V E A DE+N KD G +E +++ ++ E +S+
Sbjct: 280 GFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQYEAARAEKQSKY 339
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
+ LYV NL D +L +MF PFGT+ S +V R+
Sbjct: 340 QGVNLYVKNLHDDVDDEKLRDMFAPFGTITSAKVMRD 376
>gi|198425734|ref|XP_002119812.1| PREDICTED: similar to HUC, partial [Ciona intestinalis]
Length = 408
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 76/172 (44%), Gaps = 18/172 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L V LP++ E ++F G V S + R+ ++G S G G++ A AI
Sbjct: 83 TNLIVNYLPQTLSDQEFYQLFNNVGAVTSARIIRDKQSGYSFGYGFVDYVKPEDADKAIQ 142
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + + ++V FS + ++N LYV L+ E L
Sbjct: 143 QLNGHPIQHKTIKVAFSKPAGADSKNIN-----------------LYVAGLNPDTSEESL 185
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270
+ F +GT++ RVL D+ GF+ F++ E AA+ +LNG V S
Sbjct: 186 KQRFSSYGTIIQTRVLKDKNTNLCSGIGFVLFNTKDEAMAAIKALNGAVFSQ 237
>gi|340382048|ref|XP_003389533.1| PREDICTED: paraspeckle component 1-like [Amphimedon queenslandica]
Length = 428
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 33/167 (19%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
+RAR +Y+ NLPR EL+E+F P G V V + + + G+ M + A
Sbjct: 77 NRAR---VYIGNLPRGMTEEELMELFSPHGEVSRVYLEK------EKNFGFARMAYRDQA 127
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
AI +L+G ++ GRE+RVRF+ S + V NL V
Sbjct: 128 MKAISSLNGINLKGRELRVRFAASSCS-----------------------VKVSNLHPTV 164
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
E L N FG FG V A V+ D +G++ GF+ F+ + AA+
Sbjct: 165 SNELLFNAFGTFGEVEHAVVVTDERGKSL-GHGFVDFAKKTQAMAAI 210
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL + D L E+F FG +LS +V+ + G S+G G++ + SA+ AI
Sbjct: 90 ANLFVKNLEPNIDSKNLYEIFSSFGAILSCKVATD-SAGQSKGYGFVQYETEESAEAAIN 148
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G R+M V ++ R R+ E + +Y+ NL +DL
Sbjct: 149 GLNGMLANNRKMFV----GLHMRRRDREVKFT------------NVYIKNLPTEFSEDDL 192
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
R F FG + SA V+ D G ++ FGF++F
Sbjct: 193 RQEFAPFGEITSAVVMRDADG-ASKCFGFVNF 223
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + D +L +F V +V V R+ +G+S G GY+ S A A+ AL
Sbjct: 4 LYVGDLAETVDEPQLHALFSQVAPVATVRVCRDILSGVSLGYGYVNFYSRQEATRALEAL 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ +RV FS S ++ A L+V NL + ++L
Sbjct: 64 NFTPLIGKYIRVMFSNRDPSLRKSGRA---------------NLFVKNLEPNIDSKNLYE 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V D GQ ++ +GF+ + ++ +AA++ LNG + ++ F
Sbjct: 109 IFSSFGAILSCKVATDSAGQ-SKGYGFVQYETEESAEAAINGLNGMLANNRKMF 161
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 22/186 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NLP F +L + F PFG + S V R+ + G S+ G++ A A+
Sbjct: 178 VYIKNLPTEFSEDDLRQEFAPFGEITSAVVMRDAD-GASKCFGFVNFKKPEFAIEAVEKA 236
Query: 162 DGSDVGGREMRVRFSIDMNSRT--------RNAEALISPPKKIFVYESPHKLYVGNLSWA 213
+G +G + + V + R R + + P I LY+ N+
Sbjct: 237 NGKAIGDKTLYVGRAQKKEERKAELKTRFGRGRDNKVDKPNGI-------NLYLKNIDDG 289
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTVESHTV 272
+ E L+ F FG V S +V+ D +G+ ++ GF+SF+ ++A + A +NG + V
Sbjct: 290 INDEGLKKLFEEFGQVASCKVMVDARGR-SKGSGFVSFATAEAGQRAINRMNGRI----V 344
Query: 273 AFQPLF 278
+PL+
Sbjct: 345 GKKPLY 350
>gi|357128483|ref|XP_003565902.1| PREDICTED: uncharacterized protein LOC100828680 [Brachypodium
distachyon]
Length = 357
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 22/188 (11%)
Query: 82 NEVDDDSSVEEPRSRARPCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
E D++ + E+ E LYV NL D L ++F+ G V E+ + ETG
Sbjct: 187 QECDEEYTSEDEEYYGPAAEGTLYVGNLRHHIDDEYLAQLFENVGIVEFSEILYDRETGQ 246
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG GY+TM ++ A+ A+ ++ G+ M V + SP + +
Sbjct: 247 SRGYGYVTMSTVEEAEMAVNTFHRRELYGKLMTVE--------------MRSPHQ----H 288
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR-KG-QTTRVFGFISFSSDAER 257
SP +++VGNL V L F G VV +V + KG +R FGF++ ++ E
Sbjct: 289 RSPVRIFVGNLPCEVDGSMLNLLFSEHGQVVDTKVAYGYVKGVWRSRRFGFVTMATREES 348
Query: 258 DAALSLNG 265
D A+ L G
Sbjct: 349 DDAIYLEG 356
>gi|398802241|ref|ZP_10561457.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398100710|gb|EJL90943.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 148
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL ++V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP S +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYSVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSVVVNEARPMEAR 85
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 17/180 (9%)
Query: 89 SVEEPRSR-ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S +P SR + +++ NL +S D L + F FG +LS +V+ +G S+G G++
Sbjct: 115 SNRDPSSRKSGAANIFIKNLDKSIDNKALYDTFSVFGNILSCKVA-TEMSGESKGYGFVQ 173
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+A+NAI L+G + +++ V + R + E + PK + +YV
Sbjct: 174 FELEEAAQNAISKLNGMLLNDKKVYVGPFV----RKQERENVSGNPKF-------NNVYV 222
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NLS + ++L+ FG+FG + S V+ + G+ +R FGF++F + DA R A LNG
Sbjct: 223 KNLSESTTEDNLKEIFGKFGPITSVVVMREGDGK-SRCFGFVNFENPDDAAR-AVEDLNG 280
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 19/168 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G+V+SV V R+ T +S G Y+ S A A+ L
Sbjct: 41 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALEML 100
Query: 162 DGSDVGGREMRVRFS-IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+ + + G+ +R+ +S D +SR A +++ NL ++ + L
Sbjct: 101 NFTPINGKPIRIMYSNRDPSSRKSGA----------------ANIFIKNLDKSIDNKALY 144
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTV 267
+ F FG ++S +V + G+ ++ +GF+ F +A ++A LNG +
Sbjct: 145 DTFSVFGNILSCKVATEMSGE-SKGYGFVQFELEEAAQNAISKLNGML 191
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELL-EMFKPFGTVLSVEVSRNPETGISRGCGY 145
+ +++E + + LY+ NL S D E L E+F FGT+ S +V R+ G+S+G G+
Sbjct: 308 EKNIKEAADKNQGTNLYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDL-NGVSKGSGF 366
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ S A A++A++G +G + + V + R +A S
Sbjct: 367 VAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFS 412
>gi|121604834|ref|YP_982163.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120593803|gb|ABM37242.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 132
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG+FG V SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG V S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|226288243|gb|EEH43755.1| 28 kDa ribonucleoprotein [Paracoccidioides brasiliensis Pb18]
Length = 492
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 94/190 (49%), Gaps = 11/190 (5%)
Query: 85 DDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
D++ V +++ P E L++ NL + D L F+ FG + V + + +TG S+
Sbjct: 229 DEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTGRSK 288
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--EALISPPKKIFVY 199
G GY+ + A A A +++ GR++ V F+ N+R+ A + S +
Sbjct: 289 GFGYVEFTNAEDAVKAHAAKKDTELDGRKLNVDFA---NARSNAAPRDRAQSRAQNFGDQ 345
Query: 200 ESPHK--LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAE 256
SP L++GN++++ + F +G+++ R+ D + + FG++ FSS D
Sbjct: 346 RSPESDTLFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEA 405
Query: 257 RDAALSLNGT 266
R A SLNG+
Sbjct: 406 RSAFESLNGS 415
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 49/75 (65%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ N+ S D + + E F +G++L V + +PE+G +G GY+ SI+ A++A +L
Sbjct: 353 LFIGNIAFSADENMISETFAEYGSILGVRLPTDPESGRPKGFGYVQFSSIDEARSAFESL 412
Query: 162 DGSDVGGREMRVRFS 176
+GS++ GR MR+ FS
Sbjct: 413 NGSELAGRAMRLDFS 427
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
+ + E +++P K L++GNLSW V E LR+ F FG + R++ DR
Sbjct: 226 KAEDEEEVVAPKKTKVEPTEGGNLFIGNLSWNVDEEWLRSEFEEFGELAGVRIVTDRDTG 285
Query: 242 TTRVFGFISFSS 253
++ FG++ F++
Sbjct: 286 RSKGFGYVEFTN 297
>gi|406864898|gb|EKD17941.1| RNA recognition domain-containing protein-containing protein
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 810
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P ++A+ L+V +LP +L E+F + V +PET S+G G++T+
Sbjct: 40 PNAQAKRT-LFVRSLPAIATSDKLTELFSQDYPLKHATVVLDPETKQSKGYGFVTLADAE 98
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES----------- 201
A+ A+ +G GR+M++ + + + + L K E+
Sbjct: 99 DAQRALEEFNGKTFMGRKMKIEIAQPRSREMADGKGLEGKRKSTISAEAARIKKERLEQM 158
Query: 202 -----PHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
P KL + NL W+V PE L F +FG V + VL +KG T FGFI+
Sbjct: 159 AEEKKPPKLIIRNLPWSVNTPEKLAEIFKKFGKVKFS-VLPKKKGDTQAGFGFITMRGKK 217
Query: 256 ERDAAL-SLNGTV 267
D AL ++NGT+
Sbjct: 218 NADKALAAINGTL 230
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
K+ V ++ L++ NL + V+ +L+ HF +FG V ARV+ DR R GF+ F
Sbjct: 346 KVLVTDNSTTLFIRNLPFTVRDAELKEHFEQFGPVRYARVVMDRATDRPRGTGFVCF 402
>gi|385301748|gb|EIF45916.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 717
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ L + +L ++F P+G V S +V + + G S+G G++ + + A AI L
Sbjct: 130 LYIRGLLPTIRSEDLYKIFHPYGEVQSCKVIYD-DYGFSKGYGFVNLANRMQADRAIKGL 188
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G V G + V + R ++ E + Y + LYV N+ EDL +
Sbjct: 189 NGQSVAGNNLFVNHHVSKTDRLKDMEI------RRHNYSN---LYVKNIPPKYSKEDLSS 239
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FGT+ S + H G+ + +GFI+F
Sbjct: 240 LFNKFGTIDSVFLPHGENGEENKGYGFINF 269
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
H LY+ L ++ EDL F +G V S +V++D G ++ +GF++ ++ + D A+
Sbjct: 128 HHLYIRGLLPTIRSEDLYKIFHPYGEVQSCKVIYDDYG-FSKGYGFVNLANRMQADRAIK 186
Query: 263 -LNGTVESHTVAFQPLFPFNYV 283
LNG +VA LF ++V
Sbjct: 187 GLNG----QSVAGNNLFVNHHV 204
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 28/204 (13%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
GN+ D+S ++V +L D L E F PFG + + + R+P+T S
Sbjct: 85 GNQPKTDTSQHH--------HIFVGDLSPEIDTETLREAFAPFGEISNCRIVRDPQTLKS 136
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-----K 195
RG +++ A+NAI ++G +G R +R +S R I K +
Sbjct: 137 RGYAFVSFVKKAEAENAIAMMNGQWLGSRSIRTNWSTRKPPAPRENSKGIKSGKTPGFEE 196
Query: 196 IFVYESPHK--LYVGNL-SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252
I+ SP +Y G A+ E ++ HF +FG + RV D+ + FI F+
Sbjct: 197 IYNNTSPTNTTVYCGGFPPNAITDELIQKHFAQFGHINDTRVFKDKG------YAFIRFA 250
Query: 253 SDAERDAALSLNGT----VESHTV 272
S + AA ++ GT V+ H V
Sbjct: 251 S--KESAARAIEGTHNSEVQGHPV 272
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL S L +F GTV S ++ R ET I ++ + SA+ A+
Sbjct: 7 PKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIR--ETSIDP-FAFIEYANHQSAQTAL 63
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A++ +E+RV ++ ++ + + H ++VG+LS + E
Sbjct: 64 AAMNKRMFLKKEIRVNWATSAGNQPKTDTS------------QHHHIFVGDLSPEIDTET 111
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
LR F FG + + R++ D + +R + F+SF AE + A+++
Sbjct: 112 LREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIAM 156
>gi|84998348|ref|XP_953895.1| RNA-binding (SR) protein [Theileria annulata]
gi|65304893|emb|CAI73218.1| RNA-binding (SR) protein, putative [Theileria annulata]
Length = 303
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 21/198 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG---SINSAKN 156
+++ L RS +L E F +G V E+ R+ TG SRG G++T S+N+
Sbjct: 28 LKIFAGGLTRSTTPEDLKEYFSKYGEVTHTEIVRDKNTGRSRGFGFVTFADRDSVNTVLR 87
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+ +DG + D+ R ++ I P+ Y+ +++VG +S +
Sbjct: 88 KVHKIDGVEA-----------DVKLAVRKEKSKILAPQ----YDQTKRIFVGGVSEKITE 132
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNGTVESHTVAF 274
R++F R+G + S L DR R +GF+ + + DAE+ + L+
Sbjct: 133 SYFRDYFARYGPITSYNYLVDRATNRPRGYGFVIYENMEDAEKSIGMHLSLGRNCEAKFA 192
Query: 275 QPLFPFNYVLFVS-FTYS 291
+P +P +S F YS
Sbjct: 193 EPKYPEKEETMISDFDYS 210
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258
YES K++ G L+ + PEDL+ +F ++G V ++ D+ +R FGF++F A+RD
Sbjct: 25 YESL-KIFAGGLTRSTTPEDLKEYFSKYGEVTHTEIVRDKNTGRSRGFGFVTF---ADRD 80
Query: 259 A 259
+
Sbjct: 81 S 81
>gi|118097545|ref|XP_414620.2| PREDICTED: heterogeneous nuclear ribonucleoprotein A0 [Gallus
gallus]
Length = 307
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 13/181 (7%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L + L E F +GT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYSAVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
A V G + ++ ++ SR +A K + KL+VG L V DL
Sbjct: 66 AASPHAVDGNSVELKRAV---SREDSA--------KPGAHAKVKKLFVGGLKGDVGEGDL 114
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
HF +FG V A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 115 VQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAV 174
Query: 279 P 279
P
Sbjct: 175 P 175
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 102/181 (56%), Gaps = 10/181 (5%)
Query: 102 LYVCNLPRSFDISE-LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+YV NLP S+ ++ L ++F+ FGT+ S ++++ E SRG G++ + +A A+ A
Sbjct: 188 IYVKNLPDSYATNDDLKKLFEKFGTITSTFLAKD-ENDKSRGFGFVNFENSEAANAAVEA 246
Query: 161 LDGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGNLSWAVKPED 218
++ ++ R++ V ++ + R R + + ++ ++ + LY+ +L V +
Sbjct: 247 MNEKEIETDRKLFVGRAMKKHERERELKRIHDKIRQERDEKNKNSNLYIKHLPEDVTEDA 306
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR+ F +FGT+ S +++ D G +R FGF++F S E AA+ ++G++ + +PL
Sbjct: 307 LRDKFSKFGTITSLKIMTDNNG-DSRGFGFVNFDSADEAAAAIQEMHGSM----IDGKPL 361
Query: 278 F 278
+
Sbjct: 362 Y 362
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F G+V+S+ V R+ + S G Y+ AK+A+ L
Sbjct: 10 LYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALEEL 69
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R+ ++ RN A S IF+ NL+ + + L +
Sbjct: 70 NFEKIHDKPCRIMWA------QRNPAARRSGAGNIFIK---------NLNKEIDNKALYD 114
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FGT++S +V D KG+ +R +GF+ F + + A+ ++NG +
Sbjct: 115 TFSAFGTILSCKVAADEKGE-SRGYGFVHFEKEEDAQKAIDTVNGKM 160
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
D +E + + LY+ +LP L + F FGT+ S+++ + G SRG G++
Sbjct: 278 DKIRQERDEKNKNSNLYIKHLPEDVTEDALRDKFSKFGTITSLKIMTD-NNGDSRGFGFV 336
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSI 177
S + A AI + GS + G+ + V ++
Sbjct: 337 NFDSADEAAAAIQEMHGSMIDGKPLYVALAL 367
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 12/193 (6%)
Query: 92 EPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
E +S+AR + LYV N P D +L EMF FG + S V ++ E G S+G G++
Sbjct: 181 ERKSQARKVKFNNLYVKNFPPETDNEKLKEMFSEFGEIKSACVMKDNE-GKSKGFGFVCY 239
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLY 206
+ A+NA+ + G ++ GR + + R + I + + Y LY
Sbjct: 240 LDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELKQKIEKQRAERQSNYMLNVNLY 299
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL + + L F G++ SA+V+ D + ++ FGF+ F++ + A++ +NG
Sbjct: 300 VKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNR-SKGFGFVCFANPEQAARAVTDMNG 358
Query: 266 TVESHTVAFQPLF 278
T+ + +PL+
Sbjct: 359 TI----IGSKPLY 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 20/159 (12%)
Query: 102 LYVCNL-PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
LYV +L PR D S L F G VLS V R+ T S G GY+ A+ A+
Sbjct: 15 LYVGDLHPRVSD-SALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
L+ + GR +R+ +S S ++ + +++ NL +++ ++L
Sbjct: 74 LNYEPLMGRPIRIMWSQRDPSLRKSGKG---------------NIFIKNLDKSIEQKELY 118
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AER 257
+ F FG ++S +++ D GQ ++ +GF+ F + AER
Sbjct: 119 DTFSFFGRILSCKIVMDENGQ-SKGYGFVHFEKEECAER 156
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S + EL + F FG +LS ++ + E G S+G G++ A+ AI +
Sbjct: 103 IFIKNLDKSIEQKELYDTFSFFGRILSCKIVMD-ENGQSKGYGFVHFEKEECAERAIEKI 161
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + R + V I R A +K+ + LYV N E L+
Sbjct: 162 NNMIIRDRVVYVGKFIPKTERKSQA-------RKVKF----NNLYVKNFPPETDNEKLKE 210
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
F FG + SA V+ D +G+ ++ FGF+ + D +A +++G
Sbjct: 211 MFSEFGEIKSACVMKDNEGK-SKGFGFVCYLDPDHAENAVRTMHG 254
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE ++A +YV N+ E ++F +G ++S + ++ E G +G G
Sbjct: 218 DRISKLEE--AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ N+A A+ L+G + + + V + R + + K+ ++
Sbjct: 275 FVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L+ F +GT+ SARV+ D++G ++ FGF+ FSS E A++
Sbjct: 335 N-LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG-NSKGFGFVCFSSPEEATKAMT 392
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 393 ---EKNQQIVAGKPLY 405
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FG VLS +V+ + E G SRG G++ + AK+AI A+
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ V + R E K F +YV N+ E+
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEA----KANFT-----NIYVKNIDVETTDEEFEQ 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
F ++G +VSA + D +G+ + FGF++F +A A LNG
Sbjct: 250 LFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEELNG 293
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L ++F P G + S+ V R+ T S G Y+ + K AI L
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ GR R+ +S + + R + +++ NL A+ + L
Sbjct: 112 NYAEINGRPCRIMWS-ERDPAIRK--------------KGSGNIFIKNLHPAIDNKALHE 156
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
F FG V+S +V D G +R FGF+ F +++ +DA ++NG +
Sbjct: 157 TFSTFGEVLSCKVALDENG-NSRGFGFVHFKEESDAKDAIEAVNGML 202
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 67.0 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 86/179 (48%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RSRA LY+ N D + L +F +G LSV+V + +G SRG G+++ S
Sbjct: 319 ELRSRAGEFTNLYIKNFGGRMDDARLRAVFSEYGKTLSVKVMTDA-SGRSRGFGFVSFES 377
Query: 151 INSAKNAIIALDGSDVGGREMRV-RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209
+A+ A+ AL+G V G+ + V R + A + KLYV N
Sbjct: 378 HEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDGLRRAQGAKLYVKN 437
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L AV + LR F FG V +++ R+ ++ FG I FSS E AL+ +NG V
Sbjct: 438 LDDAVDEDRLRREFSGFGAVSRVKIM--REEGRSKGFGLICFSSADEAARALAEMNGRV 494
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 94 RSRA-------RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
RSRA R LYV +L L F G VLS+ + R+ T S G Y+
Sbjct: 135 RSRAMNVAAKYRQASLYVGDLDAEVTEDALFRKFSAAGPVLSIRICRDLLTRRSLGYAYV 194
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A+ A+ ++ + GR +R+ +S R+A S +F
Sbjct: 195 NFLRLADAQRALDTMNFDVLRGRPLRLMWS------QRDAHLRKSGVGNVF--------- 239
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ NL +V + L F FG ++S++V+ D +G +R + F+ F + D A+ +NG
Sbjct: 240 IKNLDRSVDDKALFERFSAFGKILSSKVVSDERG--SRGYAFVHFQEQSAADRAIEHMNG 297
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + E+ R
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDQEISEEEFRQ 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF+++S+ AA+
Sbjct: 248 MFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAV 286
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 216 DRQSKFEE--MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ +V G+++ V + + R + K Y+
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 332
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR F +GT+ SA+V+ D
Sbjct: 333 N-LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD 366
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 147
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 200
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL +S D L + F FG +LS +V+ +P G S+G G++ +A AI
Sbjct: 120 ANIFIKNLDKSIDNKALYDTFCVFGNILSCKVATDP-AGESKGYGFVQYERDEAAHAAIE 178
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
L+G + +++ V R E SP F + +YV NL+ +DL
Sbjct: 179 KLNGMLMNDKKVYV------GPFVRKQERDNSPGNVKF-----NNVYVKNLAETTTEDDL 227
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ FG+FG + S V+ D G+ ++ FGF++F S E A+ LNG
Sbjct: 228 KEIFGKFGAITSVVVMRDGDGR-SKCFGFVNFESPDEAALAVQDLNG 273
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + +L E+F FG + SV V R+ + G S+ G++ S + A A+ L
Sbjct: 213 VYVKNLAETTTEDDLKEIFGKFGAITSVVVMRDGD-GRSKCFGFVNFESPDEAALAVQDL 271
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK-----LYVGNLSWAVKP 216
+G +E V + + R E + + + E+ K LY+ NL V
Sbjct: 272 NGKKFSDKEWYVGRAQKKSER----EIELKEKFEKNLQEAADKYQNTNLYLKNLDDTVDD 327
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E LR F FGT+ S +V+ D G +R GF++F S + AL+ + + V +P
Sbjct: 328 EKLRELFAEFGTITSCKVMRDSNG-ASRGSGFVAFKSADDASRALA---EMNNKMVGNKP 383
Query: 277 LF 278
L+
Sbjct: 384 LY 385
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S ++L ++F G V+SV V R+ + S G Y+ + A A+ L
Sbjct: 34 LYVGDLDVSVQDAQLFDVFAQIGGVVSVRVCRDVTSRKSLGYAYVNYNTPADAARALEML 93
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR +R+ +S S ++ A I ++ NL ++ + L +
Sbjct: 94 NFTPINGRPIRIMYSNRDPSLRKSGTANI---------------FIKNLDKSIDNKALYD 138
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ ++ +GF+ + D AA+ LNG +
Sbjct: 139 TFCVFGNILSCKVATDPAGE-SKGYGFVQYERDEAAHAAIEKLNGML 184
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 63 DEEAVVVEDEINGKD------NVGGNEVDDDSSVE----------EPRSRARPCELYVCN 106
DE A+ V+D +NGK VG + + +E E + + LY+ N
Sbjct: 262 DEAALAVQD-LNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNLQEAADKYQNTNLYLKN 320
Query: 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166
L + D +L E+F FGT+ S +V R+ G SRG G++ S + A A+ ++ V
Sbjct: 321 LDDTVDDEKLRELFAEFGTITSCKVMRD-SNGASRGSGFVAFKSADDASRALAEMNNKMV 379
Query: 167 GGREMRVRFSIDMNSRTRNAEALIS 191
G + + V + R +A S
Sbjct: 380 GNKPLYVALAQRKEDRKARLQAQFS 404
>gi|156088689|ref|XP_001611751.1| RNA recognition motif domaining containing protein [Babesia bovis]
gi|154799005|gb|EDO08183.1| RNA recognition motif domaining containing protein [Babesia bovis]
Length = 280
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 28/199 (14%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
R + LYV N+ D L E F G V + + R+ TG +G ++ + + A
Sbjct: 13 DRNQEATLYVGNVDTQVDEELLWEFFVQVGPVKHLHIPRDKVTGHHQGYAFVEFDTDDDA 72
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
AI L+ + + +R +N +R+ + +E L++GNL V
Sbjct: 73 DYAIRILNFVKLYNKPLR------LNKASRDKQ----------TFEIGANLFIGNLDPDV 116
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273
+ L + F FG V+SA V+ D + F F+S+ S DAAL ++NG
Sbjct: 117 DDKQLHDTFASFGNVISANVVRDGDATDRKAFAFVSYDSFEASDAALAAMNGQ------- 169
Query: 274 FQPLFPFNYVLFVSFTYSK 292
F N + VS+ Y K
Sbjct: 170 ----FICNKPIHVSYAYKK 184
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 287
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 201
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 54 GFRSVLAVVDEEAVVVEDEING------KDNVGGNEVDDDSSVEEPRSRARPCELYVCNL 107
G+ V +E A + +++NG K VG + E S + ++V N
Sbjct: 181 GYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGLKYTNVFVKNF 240
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D +L +MF +G + S V + + G +G G++ ++A+ A+ L+ +
Sbjct: 241 GEHLDQEKLTKMFSKYGEITSAVVMTDAD-GKPKGFGFVAYADPDAAQKAVDDLNEKTLE 299
Query: 168 GREMRVRFSIDMNSRTRNA------EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
G ++++ R A EAL +++ Y+ + LYV N+ + E LR
Sbjct: 300 GTDLKLSVCRAQKKSERTADLKRKYEALKQ--ERVQRYQGVN-LYVKNIDEELTDEGLRA 356
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
HF FGT+ SA+V+ D G+ ++ FGF+ F E AA++ + S + +PL+
Sbjct: 357 HFASFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVT---EMNSKMMGSKPLY 409
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LY+ +L S L E F G VLS+ V R+ + +S G Y+ A+ A+
Sbjct: 52 ASLYIGDLHGDVTESMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 111
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + GR MR+ +S R+ A + IF+ NL + + +
Sbjct: 112 TMNFETIHGRPMRIMWS------QRDPAARRAGNGNIFIK---------NLDRVIDNKSI 156
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269
+ F FG ++S +V D G ++R +GF+ F ++ A+ +NG + S
Sbjct: 157 YDTFSLFGNILSCKVAADEDG-SSRGYGFVHFETEESAQIAIEKVNGMLLS 206
>gi|27527723|emb|CAC86462.1| glycin-rich RNA binding protein [Polytomella sp. Pringsheim 198.80]
Length = 177
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 40/63 (63%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
+LYVGNLSW K EDLR +FG+FG V A + DR+ +R FGF++ +D +DA
Sbjct: 4 RLYVGNLSWNAKEEDLRTYFGKFGEVEEASIALDRESGRSRGFGFVTLPADVAKDAIEKT 63
Query: 264 NGT 266
NG
Sbjct: 64 NGA 66
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + +L F FG V ++ + E+G SRG G++T+ + AK+AI
Sbjct: 5 LYVGNLSWNAKEEDLRTYFGKFGEVEEASIALDRESGRSRGFGFVTL-PADVAKDAIEKT 63
Query: 162 DGSDVGGREMRV 173
+G++ GR ++V
Sbjct: 64 NGAEFMGRNIKV 75
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A +Y+ N+ S E ++F+P+G V+S ++R+ E G SRG G
Sbjct: 229 DRQSKLEE--MKANFTNVYIKNIDESVSDEEFTKLFEPYGEVVSATITRD-ENGKSRGFG 285
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT----RNAEALISPPKKIFVYE 200
++ S SA A+ L+ + G+++ V + + R R EA +K Y+
Sbjct: 286 FVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQYEAARM--EKASKYQ 343
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR F +GT+ SA+V+ D
Sbjct: 344 GVN-LYVKNLTDDVDDDKLRELFSSYGTITSAKVMRD 379
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 63 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 122
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 123 NYTSIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAIDNKALHD 167
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F +FG ++S +V D G ++ +GF+ + +++A A S+NG +
Sbjct: 168 TFSQFGNILSCKVAQDELG-NSKGYGFVHYETAEAANQAIKSVNGML 213
>gi|397642327|gb|EJK75167.1| hypothetical protein THAOC_03118, partial [Thalassiosira oceanica]
Length = 452
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LY+ NL S D +L +F FG V V + T RG G++T+ + +A++AI
Sbjct: 20 KLYIGNLDYSTDEPQLRSVFGAFGAVTDVFLPMERGTSRPRGFGFVTLSTRQAAEDAIAK 79
Query: 161 LDGSDVGGREMRVRFSIDMNS--RTRNAEALISPPKKIFVYESPH-----KLYVGNLSWA 213
+D S + GR +RV S R + + P + +P KLYVGNLS+
Sbjct: 80 MDQSQLDGRTIRVNESRPRGEGPGARRSNEPGTGPGGYGAF-NPQGREDVKLYVGNLSFD 138
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNG 265
E +R+ F ++GTV + DR R F F++ + A +NG
Sbjct: 139 TNEEAVRSMFEQYGTVSDCFLPSDRDTGRPRGFAFVTMPAKEAETACNKVNG 190
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 91/182 (50%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV + + L EMF+ +GT+ S V + G RG G++ + SA++A+ L
Sbjct: 9 VYVKDFGDELNDETLKEMFEKYGTITSHRVM--IKDGKGRGFGFVAFENPESAEHAVQEL 66
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPED 218
+G ++G G+ + V + N R + K ++ Y+ + LYV NL ++ E
Sbjct: 67 NGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVN-LYVKNLDDSIDDER 125
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER--DAALSLNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + ++ FGF+ FS AE A +NG + V +P
Sbjct: 126 LRKEFSPFGTITSAKVMLEEG--RSKGFGFVLFSQHAEEATKAVTEMNGRI----VGSKP 179
Query: 277 LF 278
L+
Sbjct: 180 LY 181
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Query: 71 DEINGKD-------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNLPRSFDI 113
E+NGK+ VG + ++ +E R +R + LYV NL S D
Sbjct: 64 QELNGKELGEGKILYVGRAQKKNERQMELKRRFEQLKMERLTRYQGVNLYVKNLDDSIDD 123
Query: 114 SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS-INSAKNAIIALDGSDVGGREMR 172
L + F PFGT+ S +V E G S+G G++ A A+ ++G VG + +
Sbjct: 124 ERLRKEFSPFGTITSAKVM--LEEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLY 181
Query: 173 VRFSIDMNSRTRNAEALIS 191
V + RT + +A ++
Sbjct: 182 VALA----QRTEDRKAHLA 196
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N++ V E+ R
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEM----KANFT-----NVYVKNINNEVTDEEFRE 259
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
F +FG V S+ + D++G+ TR FGF++F++ +A A LNG
Sbjct: 260 LFAKFGEVTSSSLARDQEGK-TRGFGFVNFTTHEAAAQAVDELNG 303
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ E E+F FG V S ++R+ E G +RG G
Sbjct: 228 DRQSKFEE--MKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKTRGFG 284
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +A A+ L+G D G+++ V + + R + K Y+
Sbjct: 285 FVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGV 344
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V + LR F +G + SA+V+ D
Sbjct: 345 N-LYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV L S + L E+F G+V S+ V R+ T S G Y+ + + A+
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 160 ALDGSDVGGREMRVRFSI-DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
L+ + + GR R+ +S D R A +++ NL A+ +
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGA----------------GNIFIKNLDAAIDNKA 163
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
L + F FG ++S +V D G ++ +GF+ + +D A A +NG +
Sbjct: 164 LHDTFAAFGNILSCKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGML 212
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 458 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 516
Query: 151 INSAKNAIIALDGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKK 195
+AK A+ ++G D+ G+ E++ F N R R + +
Sbjct: 517 HEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQLKNERIRGCQVV------ 570
Query: 196 IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
KLYV NL + E LR F FG++ +V+ + +GQ ++ FG I FSS
Sbjct: 571 --------KLYVKNLDDTIDDEKLRKEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPE 620
Query: 256 ERDAALS-LNGTV 267
+ A++ +NG +
Sbjct: 621 DALKAMTEMNGRI 633
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 21/184 (11%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D++ VE ++ R LYV +L L F G VLS+ + R+ T S G
Sbjct: 275 DEEMDVE---AKYRMASLYVGDLHADVTEDLLFRKFSAAGPVLSIRICRDQLTRRSLGYA 331
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
Y+ + A+ A+ ++ + G+ +R+ +S R+A S +F+
Sbjct: 332 YVNFLHLADAQKALDTMNFDVIQGKSIRLMWS------QRDAYLRRSGIGNVFIK----- 380
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
NL ++ + L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +
Sbjct: 381 ----NLDKSIDNKTLYEHFSAFGRILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 434
Query: 264 NGTV 267
NG +
Sbjct: 435 NGKL 438
>gi|121583148|ref|YP_973589.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120596410|gb|ABM39847.1| RNP-1 like RNA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 148
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG+FGTV SA+V+ +R ++ FGF+ ++DA+ AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAIN 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FGTV S +V +TG S+G G++ M + A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGQFGTVTSAKVMMERDTGRSKGFGFVEMANDAQAQAAING 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQPLGGRSITVNEARPMEAR 85
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 287
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 201
>gi|67528248|ref|XP_661934.1| hypothetical protein AN4330.2 [Aspergillus nidulans FGSC A4]
gi|40741301|gb|EAA60491.1| hypothetical protein AN4330.2 [Aspergillus nidulans FGSC A4]
gi|259482863|tpe|CBF77747.1| TPA: ribosome biogenesis (Nop4), putative (AFU_orthologue;
AFUA_4G06250) [Aspergillus nidulans FGSC A4]
Length = 724
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
N V +D + + PR EL++ +LP S L E F + V +P+T S+
Sbjct: 25 NNVQEDGATQ-PRR-----ELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSK 78
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS------ID--MNSRTRNAEALISPP 193
G G++T + AK A+ L+GS G++++V ++ +D + +AEAL
Sbjct: 79 GYGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKK 138
Query: 194 KK--IFVYESPHKLYVGNLSWAVK-PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250
++ P KL V NL W++K PEDL HF FG V V +KG FGF+
Sbjct: 139 QREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKV--KYVTLPKKGSQLAGFGFVV 196
Query: 251 FSSDAERDAAL-SLNGT-VESHTVA 273
+ AL ++NG V+ T+A
Sbjct: 197 LRGKKNAEKALEAVNGKEVDGRTLA 221
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 69 VEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISE-LLEMFKPFGTVL 127
V DE GK ++ E+ ++ +P +L V NLP S E L F+ FG V
Sbjct: 119 VVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVK 178
Query: 128 SVEVSRNPETGIS-RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
V + P+ G G G++ + +A+ A+ A++G +V GR + V ++++
Sbjct: 179 YVTL---PKKGSQLAGFGFVVLRGKKNAEKALEAVNGKEVDGRTLAVDWAVE 227
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPR 109
+H A +++A+ + E ++N + G D SS ++V +L
Sbjct: 57 NHQAASTALIAMNKRHVLEKEIKVNWATSPGNQPKQDTSSHHH---------IFVGDLSP 107
Query: 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169
++ L E F PFG + + + R+P+T S+G +++ A++AI A++G +G R
Sbjct: 108 EIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMNGQWLGNR 167
Query: 170 EMRVRFSIDM-----NSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDLRNH 222
+R +S R+R A ++++ SP +Y G + + + +
Sbjct: 168 SIRTNWSTRKPPPPRTERSRQGNAKAVSYEEVYNQSSPTNCTVYCGGFTNGINEDLIEKA 227
Query: 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F RFGT+ R D+ + FI FS+ A+
Sbjct: 228 FSRFGTIQDIRSFKDKG------YAFIRFSTKEAATHAI 260
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P LYV NL S L +F G+V ++ R P + ++ + +A A+
Sbjct: 9 PKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPN---NDPYAFVEFVNHQAASTAL 65
Query: 159 IALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
IA++ V +E++V ++ ++ + + S H ++VG+LS ++
Sbjct: 66 IAMNKRHVLEKEIKVNWATSPGNQPKQDTS------------SHHHIFVGDLSPEIEMHT 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
LR F FG + + R++ D + ++ + F+SF AE ++A+ ++NG
Sbjct: 114 LREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAESAIHAMNG 161
>gi|145491019|ref|XP_001431509.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145522722|ref|XP_001447205.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398614|emb|CAK64111.1| unnamed protein product [Paramecium tetraurelia]
gi|124414705|emb|CAK79808.1| unnamed protein product [Paramecium tetraurelia]
Length = 260
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 59/102 (57%)
Query: 81 GNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGIS 140
G + + + ++ R++ L++ NL D L E F FG +LS ++ RNPETG+S
Sbjct: 87 GKPIKVNKASQDKRTQEVGANLFIGNLDTEIDEKTLYETFSAFGHILSTKIMRNPETGVS 146
Query: 141 RGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+G G+++ + S+ A+ A++G +G + +RV ++ +++
Sbjct: 147 KGYGFVSYDNFESSDGALTAMNGQFLGTKIIRVEYAFKKDAK 188
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 17/172 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
R + +Y+ NL + + E+F G V++V + ++ +G +G G++ S A
Sbjct: 14 ERNQEATIYIGNLDQKVTDDIVWELFIQCGPVVNVHIPKDKISGEHQGYGFVEFKSEEDA 73
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
AI + + G+ ++V + RT+ A L++GNL +
Sbjct: 74 DYAIKIMHMIKLYGKPIKVN-KASQDKRTQEVGA---------------NLFIGNLDTEI 117
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
+ L F FG ++S +++ + + ++ +GF+S+ + D AL+ +NG
Sbjct: 118 DEKTLYETFSAFGHILSTKIMRNPETGVSKGYGFVSYDNFESSDGALTAMNG 169
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + + G S+G G++ + +A +AI +
Sbjct: 100 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVTDGK-GNSKGYGFVHYETSEAADSAIAKV 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+ + V I RT S P+K +Y+ NL A EDL+
Sbjct: 159 NGKMLNGKIVYVGRFIARKERTPG-----SDPEKF------TNIYIKNLGEAYTEEDLKR 207
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
FG FGTV SA ++ D + R F F++F +A A LNG
Sbjct: 208 DFGAFGTVQSAVLMKDPR-DIGRQFAFVNFEDHEAAHRATEELNG 251
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 86/174 (49%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E+FK G V S+ V R+ T S G Y+ ++ A+ A+ L
Sbjct: 12 LYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDTL 71
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S ++ + +++ NL ++ + L +
Sbjct: 72 NYTLIKGRPCRIMWSHRDPSIRKSGQG---------------NIFIKNLDKSIDNKALYD 116
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
F FG ++S +V+ D KG ++ +GF+ + + D+A++ +NG + + + +
Sbjct: 117 TFSAFGNILSCKVVTDGKG-NSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVY 169
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL ++ +L F FGTV S + ++P I R ++ +A A L
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRD-IGRQFAFVNFEDHEAAHRATEEL 249
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G +G +E+ V + + R L + + LY+ NL V E+L
Sbjct: 250 NGRKLGDKEVYVGRAQKKSERESFLRKLREERAQKY---QGINLYIKNLDDTVNDEELHK 306
Query: 222 HFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
F FG + S +V+ D KG +R FGF+ +++ + A+S +NG + VA +P++
Sbjct: 307 LFSALPFGQITSCKVMSDDKG-NSRGFGFVCYTNPEDASKAVSEMNGKM----VANKPIY 361
>gi|402218951|gb|EJT99026.1| hypothetical protein DACRYDRAFT_24111 [Dacryopinax sp. DJM-731 SS1]
Length = 1056
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
A C L+V N P +D + ++F PFGT++ V R C Y+ S +SA +
Sbjct: 712 AWKCTLFVTNFPEKYDDPTIRQLFSPFGTIIDVRWPSKRINTTRRFC-YVQYTSPSSAND 770
Query: 157 AIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
A ++L+ ++ E R S++++ TR + + K ++YV L+ VK
Sbjct: 771 A-LSLNDQEL---ENDRRISVNISDPTRKKQRTDAGADK-------REVYVAGLARGVKK 819
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGT 266
E+L FG G+V R+ G + FGF+ F + +AALSLN T
Sbjct: 820 EELEKLFGEKGSVKEVRLALGPDG-LCKGFGFVEFQDEVGAEAALSLNNT 868
>gi|50286801|ref|XP_445830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525136|emb|CAG58749.1| unnamed protein product [Candida glabrata]
Length = 425
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
+++SS ++ ++ P ++V L S D L + F+ G V++ V T SRG G
Sbjct: 161 EEESSPKKAKTDGEPATVFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTDRSRGYG 220
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSID---MNSRTRNAEALISPPKKIFVYES 201
Y+ + A+ A+ + G ++ GR + V S +N R + P E
Sbjct: 221 YVDFEDKSYAEKAVKEMHGKEIDGRPINVDMSTSKPTVNPREDRQKRFGDIPS-----EP 275
Query: 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAA 260
L++GNLS+ +++ FG+FG ++S R+ + + + FG++ ++S D + A
Sbjct: 276 SDTLFLGNLSFNADRDNIYEIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKKAL 335
Query: 261 LSLNG 265
+L G
Sbjct: 336 EALQG 340
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 72 EINGKDNVGGNEVDDDSSVEEPRSRAR----------PCE----LYVCNLPRSFDISELL 117
E++GK+ + G ++ D S +P R P E L++ NL + D +
Sbjct: 236 EMHGKE-IDGRPINVDMSTSKPTVNPREDRQKRFGDIPSEPSDTLFLGNLSFNADRDNIY 294
Query: 118 EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
E+F FG ++SV + +PET +G GY+ SI+ AK A+ AL G + R +R+ +S
Sbjct: 295 EIFGKFGEIISVRIPTHPETEQPKGFGYVQYTSIDDAKKALEALQGEYIDNRPVRLDYS 353
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 182 RTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ 241
R E S PKK P ++VG LSW++ E L+ F G VV+ARV+++R
Sbjct: 155 RKAEDEEEESSPKKAKTDGEPATVFVGRLSWSIDDEWLKQEFEHIGGVVAARVMYERGTD 214
Query: 242 TTRVFGFISFSSDAERDAAL 261
+R +G++ F + + A+
Sbjct: 215 RSRGYGYVDFEDKSYAEKAV 234
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +Y N+ F E ++F+ +G + S+ + ++ E G S+G G
Sbjct: 219 DRESKFEE--MKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 276 FVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGV 335
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FG++ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 336 N-LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 393
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 394 ---EMNQRMIYGKPLY 406
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + AI L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D G ++ FGF+ +
Sbjct: 158 TFTAFGKILSCKVATDDMG-ISKCFGFVHY 186
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 57 SVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVC 105
S + VDE + + EING+ G +EE + S+ + L++
Sbjct: 284 SAVKAVDE---LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIK 340
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
NL + D +L E FKPFG++ S V + ETG S+G G++ S A AI ++
Sbjct: 341 NLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRM 399
Query: 166 VGGREMRVRFSIDMNSRTRNAEALIS 191
+ G+ + V + + R E I
Sbjct: 400 IYGKPLYVALAQRKDVRRSQLEQQIQ 425
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + + GIS+ G++ + +A+ AI +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENV 199
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + K F +Y N+ E+ +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEM----KANFT-----NVYAKNIDLDFSEEEFKK 250
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +G + S + D +G+ ++ FGF++F +
Sbjct: 251 LFEAYGKITSIYLEKDHEGK-SKGFGFVNFEN 281
>gi|302121706|gb|ADK92872.1| hnRNP [Hypericum perforatum]
Length = 477
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V + + L E F FG V+ + ++ TG +RG G++ + A I
Sbjct: 6 GKLFVGGISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADPSVADRVI- 64
Query: 160 ALDGSDVGGREMRVRFSI---DMNSRTRNA-EALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ ++ GR + + +I D N +RN+ ++ P + K++VG L+ V
Sbjct: 65 -KEKHNIDGRMVEAKRAIPRDDQNIPSRNSVSSMHGSPGP----DHTRKIFVGGLASTVT 119
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
D +N+F +FG ++ A V++D Q R FGFI++ SD D L+
Sbjct: 120 ESDFKNYFDQFGIIIDAVVMYDHNTQRPRGFGFITYDSDEAVDKVLT 166
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
KL+VG +SW E L+ +FG FG VV A ++ DR R FGFI F+ + D +
Sbjct: 7 KLFVGGISWDTNEERLKEYFGSFGDVVEAVIMKDRTTGRARGFGFIVFADPSVADRVIKE 66
Query: 264 NGTVESHTVAFQPLFP 279
++ V + P
Sbjct: 67 KHNIDGRMVEAKRAIP 82
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 6/169 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S EL E+F FG + S V R+ + G S+ G++ + + A A++ L
Sbjct: 182 VFVKNLGESTTDDELKEVFGAFGKITSAVVMRDSD-GKSKCFGFVNFENPDEAAKAVVGL 240
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNLSWAVKPEDL 219
+G + +E V + + R A +K I Y+ + LY+ NL V E L
Sbjct: 241 NGKKIEDKEWYVGRAQKKSEREAELRAKYEQERKERIDRYQGAN-LYLKNLDDDVDDERL 299
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD-AALSLNGTV 267
R F FG++ S +V+ D +GQ ++ GF+++S+ E + A + +NG +
Sbjct: 300 REIFADFGSITSCKVMRDAQGQ-SKGSGFVAYSAPEEANRATIEMNGKM 347
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + ++L ++F G VLS+ V R+ T S G Y+ ++ A A+ L
Sbjct: 6 LYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRALELL 65
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ FS S ++ A +++ NL A+ + L +
Sbjct: 66 NFTPVNGKAVRIMFSHRDPSIRKSGTA---------------NIFIKNLDRAIDNKALHD 110
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V D GQ ++ +GF+ F + A+ +NG + + F
Sbjct: 111 TFVSFGNILSCKVATDSNGQ-SKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVF 163
>gi|453089609|gb|EMF17649.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 337
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 85/200 (42%), Gaps = 23/200 (11%)
Query: 66 AVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125
A +D ++G N V S + P + LYV NL EL F FG
Sbjct: 113 ASSAKDALSGAAEKVVNMVRPSSRFQFPNEPGKDTVLYVGNLFFEVTAQELEAEFGRFGE 172
Query: 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS---- 181
V++ + ++P TG SRG G++ + + +A NAI LD GR M V+ + +
Sbjct: 173 VVNSRIVKDP-TGSSRGFGFIELSTTEAAMNAIRGLDQKVFQGRRMLVQKHVRKDKPKSP 231
Query: 182 ------RTRNA---EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232
R R+A A SP K +F+ GN+S+ + DL N F V+
Sbjct: 232 GGSYAPRDRDAPRDRASASPSKTLFI---------GNMSYEMSDRDLNNLFREIKNVLDV 282
Query: 233 RVLHDRKGQTTRVFGFISFS 252
RV DR+ R F F+
Sbjct: 283 RVAIDRRSGQPRGFAHADFT 302
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
LYVGNL + V ++L FGRFG VV++R++ D G ++R FGFI S+
Sbjct: 149 LYVGNLFFEVTAQELEAEFGRFGEVVNSRIVKDPTG-SSRGFGFIELST 196
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 80 GGNEVDDDSSVEEPRSRARPCE-LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
GG+ D R+ A P + L++ N+ +L +F+ VL V V+ + +G
Sbjct: 232 GGSYAPRDRDAPRDRASASPSKTLFIGNMSYEMSDRDLNNLFREIKNVLDVRVAIDRRSG 291
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178
RG + + SA+ A L V GR++RV F+ +
Sbjct: 292 QPRGFAHADFTDVESAEKAKEFLGSKMVYGRQLRVDFAAE 331
>gi|354544201|emb|CCE40924.1| hypothetical protein CPAR2_109610 [Candida parapsilosis]
Length = 475
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P ++ L + D L F+ V+ V TG SRG GY+ S +A+ AI
Sbjct: 234 PATVFAGRLSWNIDDDWLKREFEHLEGVIGARVIMERATGKSRGYGYVDFTSKAAAEKAI 293
Query: 159 IALDGSDVGGREMRVRFSIDM-------NSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ G ++ GR + + S N R + SPP L++GNLS
Sbjct: 294 EEMQGREIDGRPINLDLSTGRPHATKPNNDRAKQFGDQQSPPSDT--------LFIGNLS 345
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ + L FG +G V+S R+ Q + FG++ F S E AAL +LNG
Sbjct: 346 FNANRDKLFEIFGEYGNVISCRLPTHPDTQQPKGFGYVQFGSVDEAKAALEALNG 400
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + + +L E+F +G V+S + +P+T +G GY+ GS++ AK A+ AL
Sbjct: 339 LFIGNLSFNANRDKLFEIFGEYGNVISCRLPTHPDTQQPKGFGYVQFGSVDEAKAALEAL 398
Query: 162 DGSDVGGREMRVRFS 176
+G + GR R+ FS
Sbjct: 399 NGEYLEGRPCRLDFS 413
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E P ++ G LSW + + L+ F V+ ARV+ +R +R +G++ F+S A +
Sbjct: 232 EEPATVFAGRLSWNIDDDWLKREFEHLEGVIGARVIMERATGKSRGYGYVDFTSKAAAEK 291
Query: 260 AL 261
A+
Sbjct: 292 AI 293
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG++LS +V+ + +G S+G G++ + +A AI L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +E K F + ++V NL+ EDL+N
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSE------KTKF-----NNVFVKNLAETTSEEDLKN 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FG + S V+ D +G+ ++ FGF++F + DA R +LNG
Sbjct: 227 MFGEFGPITSVVVMRDGEGK-SKCFGFVNFENADDAARSVE-ALNG 270
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L MF FG + SV V R+ E G S+ G++ + + A ++ AL
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVEAL 268
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G V G+E V + ++ ++R +++ K Y+ + LYV NL ++
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADK---YQGAN-LYVKNLDDSIDD 324
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ L+ F FGT+ S +V+ D G +R GF++FSS E AL+ +NG + + +
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNG-ISRGSGFVAFSSPEEAARALAEMNGRM----IVSK 379
Query: 276 PLF 278
PL+
Sbjct: 380 PLY 382
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ SV+E + + LYV NL S D +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 298 EQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G + + + V + R +A S
Sbjct: 357 AFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFS 401
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++S+ + AL +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDV- 89
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL + V +++ PS R G G
Sbjct: 90 -------LNFTPL--NGNPIRVMYSHRDPSVRKSGSG 117
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 16/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D L + F FG++LS +V+ + +G S+G G++ + +A AI L
Sbjct: 119 IFIKNLDKAIDHKALHDTFSAFGSILSCKVATD-SSGQSKGFGFVQFDTEEAALKAIEKL 177
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R +E K F + ++V NL+ EDL+N
Sbjct: 178 NGMLLNDKQVFVGPFLRKQERESVSE------KTKF-----NNVFVKNLAETTSEEDLKN 226
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
FG FG + S V+ D +G+ ++ FGF++F + DA R +LNG
Sbjct: 227 MFGEFGPITSVVVMRDGEGK-SKCFGFVNFENADDAARSVE-ALNG 270
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 16/183 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL + +L MF FG + SV V R+ E G S+ G++ + + A ++ AL
Sbjct: 210 VFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGE-GKSKCFGFVNFENADDAARSVEAL 268
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G V G+E V + ++ ++R +++ K Y+ + LYV NL ++
Sbjct: 269 NGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADK---YQGAN-LYVKNLDDSIDD 324
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
+ L+ F FGT+ S +V+ D G +R GF++FSS E AL+ +NG + + +
Sbjct: 325 DKLKELFTGFGTITSCKVMRDPNG-ISRGSGFVAFSSPEEAARALAEMNGRM----IVSK 379
Query: 276 PLF 278
PL+
Sbjct: 380 PLY 382
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ SV+E + + LYV NL S D +L E+F FGT+ S +V R+P GISRG G++
Sbjct: 298 EQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGTITSCKVMRDP-NGISRGSGFV 356
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++G + + + V + R +A S
Sbjct: 357 AFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFS 401
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++S+ + AL +
Sbjct: 31 LYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRALDV- 89
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301
+ F PL + V +++ PS R G G
Sbjct: 90 -------LNFTPL--NGNPIRVMYSHRDPSVRKSGSG 117
>gi|164657762|ref|XP_001730007.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
gi|159103901|gb|EDP42793.1| hypothetical protein MGL_2993 [Malassezia globosa CBS 7966]
Length = 638
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 9/170 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V L + D L F+ +GTVL V + ++G SRG GY+ + A A
Sbjct: 396 LWVGQLSWNVDNDWLKSEFEQYGTVLDARVQCDRDSGRSRGFGYVDFATSAEALRASKEA 455
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYES---PHKLYVGNLSWAVKPED 218
G ++ GR +RV + R AE+ K F E + L++G L+WA+ +D
Sbjct: 456 HGKELDGRALRVDLQPARGPQDR-AESRA----KHFKDERSAPSNTLFIGGLAWALTEDD 510
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ N F FG V R+ + + FG++ F S D A ++NG
Sbjct: 511 IWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETMNGQA 560
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 173 VRFSIDMNSRTRNAEALISPPK-KIFVYESP------HKLYVGNLSWAVKPEDLRNHFGR 225
V + D R +AE S K K E+P L+VG LSW V + L++ F +
Sbjct: 357 VAAAKDSKKRKADAEPASSTKKSKTDSNENPTHDNGIKTLWVGQLSWNVDNDWLKSEFEQ 416
Query: 226 FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
+GTV+ ARV DR +R FG++ F++ AE +L + E+H
Sbjct: 417 YGTVLDARVQCDRDSGRSRGFGYVDFATSAE-----ALRASKEAH 456
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ L + ++ F FG V V + + ++G +G GY+ S ++A A+ +
Sbjct: 497 LFIGGLAWALTEDDIWNAFAEFGEVTGVRLPKEIDSGRPKGFGYVEFVSQDNAAKALETM 556
Query: 162 DGSDVGGREMRVRFS 176
+G +GGR +R+ F+
Sbjct: 557 NGQALGGRPIRIDFA 571
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 93/181 (51%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N D +L EMF P+G + S +V E G S+ G++ + +A+ A+ AL
Sbjct: 185 VYVKNFGDDVDDEKLKEMFDPYGKITSYKVMIK-EDGKSKCFGFVAFETTEAAEAAVEAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + KK ES + LYV NL + E
Sbjct: 244 NGKDMGDGKALYVARAQKKAERQQELKRKFEELKKK-RQESVYGVNLYVKNLDDTIDDER 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F FGT+ SA+V+ D G+ ++ FGF+ F + E A++ +NG V V +PL
Sbjct: 303 LRKEFSLFGTITSAKVMTDEDGR-SKGFGFVCFVAPHEATCAVTEMNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 11/148 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+ + + G S+G G++ + +A NAI +
Sbjct: 92 VFIKNLDKTIDNKAIYDTFSAFGNILSCKVATD-DKGTSKGYGFVHFETEEAANNAIEKV 150
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R ++ + K+F +YV N V E L+
Sbjct: 151 NGMLLNGKKVYVGKFIPRKEREKD----LGEKAKLFT-----NVYVKNFGDDVDDEKLKE 201
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFI 249
F +G + S +V+ G+ ++ FGF+
Sbjct: 202 MFDPYGKITSYKVMIKEDGK-SKCFGFV 228
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + + L E F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + +R+ +S S R+ +++ NL + + + +
Sbjct: 64 NFDLLRNKPIRIMWSQRDPSLRRSGIG---------------NVFIKNLDKTIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D KG T++ +GF+ F + +A +A +NG +
Sbjct: 109 TFSAFGNILSCKVATDDKG-TSKGYGFVHFETEEAANNAIEKVNGML 154
>gi|440911412|gb|ELR61086.1| CUGBP Elav-like family member 4 [Bos grunniens mutus]
Length = 487
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 14/171 (8%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ +PR+ D +L +F+ FG + + V ++ TG+ +GC +LT SA A A
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114
Query: 161 L--DGSDVGG--REMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
L D +GG R ++V+ D SR + L PP + KL+VG L+
Sbjct: 115 LHADEKHLGGMNRPIQVK-PADSESRG-GSSCLRQPPSQD------RKLFVGMLNKQQSE 166
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+D+R F FG + +L G ++ F+ +SS AE AA+ +L+G+
Sbjct: 167 DDVRRLFEAFGNIEECTILRGPDG-NSKGCAFVKYSSHAEAQAAINALHGS 216
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F +EL++MF PF G+++ + SA+ AI
Sbjct: 422 CNLFIYHLPQEFGDAELMQMFLPF--------------------GFVSFDNPASAQTAIQ 461
Query: 160 ALDGSDVGGREMRVRF 175
A++G +G + ++V+
Sbjct: 462 AMNGFQIGMKRLKVQL 477
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+P E E+F+ FG V S ++R+ +TG SRG G
Sbjct: 230 DRQSKFEE--MKANFTNIYVKNIPVEATDEEFRELFEKFGDVTSASLARDQDTGKSRGFG 287
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + A A+ L+G D G+++ V + + R + K Y+
Sbjct: 288 FVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSYEAARIEKASKYQGV 347
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL V E LR F FG + SA+V+ D
Sbjct: 348 N-LYVKNLDDDVDDEKLRELFTPFGAITSAKVMRD 381
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E+G S+G G++ + +A AI +
Sbjct: 152 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-ESGASKGYGFVHYETDEAASQAIKHV 210
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R
Sbjct: 211 NGMLLNEKKVFVGHHIPKKDRQSKFEEM----KANFT-----NIYVKNIPVEATDEEFRE 261
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG V SA + D+ +R FGF++F
Sbjct: 262 LFEKFGDVTSASLARDQDTGKSRGFGFVNF 291
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+V P++ A LYV L S + L E+F G+V S+ V R+ T S G Y+
Sbjct: 53 SAVPHPQASA---SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVN 109
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A+ L+ + + GR R+ +S + + + +++
Sbjct: 110 YNTTTDGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFI 154
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +D A A +NG
Sbjct: 155 KNLDTAIDNKALHDTFAAFGNILSCKVAQDESG-ASKGYGFVHYETDEAASQAIKHVNGM 213
Query: 267 VESHTVAF 274
+ + F
Sbjct: 214 LLNEKKVF 221
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + S+L E F P G+V S+ V R+ T S G GY+ S + + A+ L
Sbjct: 54 LYVGELDPTVTESDLYEFFSPIGSVNSIRVCRDAVTKRSLGYGYVNFHSQAAGERALEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ G R+ +S S R+ I ++ NL A++ + L +
Sbjct: 114 NYAEIKGVRCRLMWSQRDPSLRRSGSGNI---------------FIKNLDPAIENKTLHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG V+S +V D G ++ FGF+ + SD AA+ ++NG +
Sbjct: 159 TFSSFGKVLSCKVATDENG-NSKGFGFVHYESDEAAQAAIENINGML 204
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + + L + F FG VLS +V+ + E G S+G G++ S +A+ AI +
Sbjct: 142 IFIKNLDPAIENKTLHDTFSSFGKVLSCKVATD-ENGNSKGFGFVHYESDEAAQAAIENI 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GRE+ V + R + +I +F V N ++LR
Sbjct: 201 NGMLLNGREIYVGPHLAKKDRESRFQEMIKNYTNVF---------VKNFDTESTEDELRE 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +G + S + D +G + FGF++F AE D A+ + +PL+
Sbjct: 252 LFESYGPITSIHLQVDSEGH-NKGFGFVNF---AEHDDAVKAVEALNDKEYKGKPLY 304
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E + + L++ NL S D + L E FKPFGT+ S +V + E G SRG G++ + +
Sbjct: 328 EKLQKYQSVNLFIKNLDESIDDARLEEEFKPFGTITSAKVMLD-ENGKSRGFGFVCLSTP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFS 176
A AI ++ V + + V +
Sbjct: 387 EEATKAISEMNQRMVANKPLYVALA 411
>gi|321262697|ref|XP_003196067.1| non-translatable mRNA -binding protein [Cryptococcus gattii WM276]
gi|317462542|gb|ADV24280.1| Non-translatable mRNA -binding protein, putative [Cryptococcus
gattii WM276]
Length = 434
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 88 SSVEEPRSRARPCELYVCNL-PRSFDISELLEMFKPFGTVLSVEV--SRNPETGISRGCG 144
S E P+ RP LYV NL PR D L E+F G V+S ++ RN + G G
Sbjct: 14 QSAEAPK---RP-HLYVGNLSPRVTDYI-LTEIFAVAGPVVSAKIIQDRNFQHG-GFNYG 67
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ + SA+ A+ L+G + E+RV ++ N + + +
Sbjct: 68 FVEYADMRSAEQALTTLNGRKIFDAEIRVNWAYQGNQNKEDTQ-------------HHYH 114
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++VG+LS V + L FG FG++ ARV+ D +R +GF+SF A+ + A+ S+
Sbjct: 115 VFVGDLSPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASM 174
Query: 264 NG 265
NG
Sbjct: 175 NG 176
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 290
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 277 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 370
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 21/181 (11%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S+ +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 44 SAANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 99
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 100 YNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFI 144
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGT 266
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG
Sbjct: 145 KNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGM 203
Query: 267 V 267
+
Sbjct: 204 L 204
>gi|425781065|gb|EKV19047.1| Nucleolin protein Nsr1, putative [Penicillium digitatum PHI26]
Length = 537
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL + D L F FG + V + + ETG SRG GY+ S A A+
Sbjct: 281 ANLFIGNLSWNVDEEWLQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAME 340
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPE 217
A G+D+ GR + + ++ + T+ A+ + SP L+VGNL ++ +
Sbjct: 341 AKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQTSPESDTLFVGNLPFSATED 400
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L FG G+V+ R+ +++ + FG++ FSS D + A +LNG
Sbjct: 401 ALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAALNG 449
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S L E+F G+VL + + ETG +G GY+ SI+ AK A AL
Sbjct: 388 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 447
Query: 162 DGSDVGGREMRVRFSI 177
+G ++ GR +R+ FS
Sbjct: 448 NGHELEGRAIRLDFST 463
>gi|392569148|gb|EIW62322.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 556
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 86 DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145
D ++VEE +++ ++V L + D L + F G V+S V + TG SRG GY
Sbjct: 287 DAAAVEEEGTKS----IFVGRLSWNVDNDWLAQEFAECGEVISARVQMDRNTGKSRGFGY 342
Query: 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN---SRTRNAEAL---ISPPKKIFVY 199
+ + + + A++ L+G ++ GR + + S + +R + AE S P +
Sbjct: 343 VEFATTEAVEAALL-LNGKEIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAV--- 398
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERD 258
L+VGNLSW + + FG G V S R+ DR+ + FG++ F+ + +
Sbjct: 399 -----LFVGNLSWDCTEDQVWEVFGEHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKK 453
Query: 259 AALSLNGTVESHTVAFQPL 277
A L+GT VA +P+
Sbjct: 454 AFEGLSGT----EVAGRPI 468
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 72 EINGKD-NVGGNEVDDDSSVEEPR------SRARPCE-LYVCNLPRSFDISE--LLEMFK 121
EI+G+ N+ +E D + E R S + P L+V NL S+D +E + E+F
Sbjct: 361 EIDGRPVNIDKSEQKDKGAAREKRAEKFGDSASEPSAVLFVGNL--SWDCTEDQVWEVFG 418
Query: 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176
G V SV + + ETG +G GY+ I +AK A L G++V GR +R+ +S
Sbjct: 419 EHGDVKSVRLPTDRETGRPKGFGYVEFTDIETAKKAFEGLSGTEVAGRPIRLDYS 473
>gi|58266842|ref|XP_570577.1| mRNA catabolism, nonsense-mediated-related protein [Cryptococcus
neoformans var. neoformans JEC21]
gi|134110468|ref|XP_776061.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258729|gb|EAL21414.1| hypothetical protein CNBD1090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226810|gb|AAW43270.1| mRNA catabolism, nonsense-mediated-related protein, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 434
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 23/182 (12%)
Query: 88 SSVEEPRSRARPCELYVCNL-PRSFDISELLEMFKPFGTVLSVEV--SRNPETGISRGCG 144
S E P+ RP LYV NL PR D L E+F G V+S ++ RN + G G
Sbjct: 14 QSAEAPK---RP-HLYVGNLSPRVTDYI-LTEIFAVAGPVVSAKIIQDRNFQHG-GFNYG 67
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK 204
++ + SA A+ L+G + E+RV ++ N + + +
Sbjct: 68 FVEYADMRSADQALTTLNGRKIFDAEIRVNWAYQGNQNKEDTQ-------------HHYH 114
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263
++VG+LS V + L FG FG++ ARV+ D +R +GF+SF A+ + A+ S+
Sbjct: 115 VFVGDLSPEVNDDVLSKAFGAFGSLSEARVMWDMNSGKSRGYGFLSFRDKADAEQAIASM 174
Query: 264 NG 265
NG
Sbjct: 175 NG 176
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D +L MF FG + S V + + G +G G++ ++A A+ L
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 298
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAE------ALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ S + G + ++ R+AE AL +++ Y+ + LYV N+ +
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQ--ERVQRYQGVN-LYVKNIEEDLN 355
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQ 275
+ LR+HF FGT+ SA+V+ D G+ ++ FGF+ F E AA++ + S + +
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVT---DMNSKMIGAK 411
Query: 276 PLF 278
PL+
Sbjct: 412 PLY 414
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F G VLS+ V R+ + +S G Y+ A+ A+ +
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR MR+ +S R+ A + IF+ NL + + + +
Sbjct: 119 NFEVIHGRPMRIMWS------QRDPAARRAGNGNIFIK---------NLDRVIDNKSVYD 163
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES----HTVAFQP 276
F FG ++S +V D +G ++ +GF+ F ++ A+ +NG + S + FQP
Sbjct: 164 TFSLFGNILSCKVATDDEG-NSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQP 222
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ ETG S+G G++ + +A AI +
Sbjct: 149 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ETGASKGYGFVHYETDEAAAQAIKHV 207
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + I R E + K F +YV N+S V + R
Sbjct: 208 NGMLLNEKKVYVGYHIPKKDRQSKFEEM----KANFT-----NVYVKNISPDVTDNEFRE 258
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGT 266
F ++G V S+ + D++G+ +R FGF++F++ +A A LNG
Sbjct: 259 LFEKYGDVTSSSLARDQEGK-SRGFGFVNFTTHEAAYKAVDELNGN 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 27/206 (13%)
Query: 73 INGKDNVGGNEVD-------DDSSVEEPRSRARP---CELYVCNLPRSFDISELLEMFKP 122
+NG D+V VD +D+S P + P LYV L S + L E+F
Sbjct: 22 LNGSDDVKAPAVDTGVSAGAEDASAPTPTAAPHPQNSASLYVGELDPSVTEAMLFELFSQ 81
Query: 123 FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
G V S+ V R+ T S G Y+ S + A+ L+ + + GR R+ +S +
Sbjct: 82 IGAVASIRVCRDAVTRRSLGYAYVNYNSTPDGEKALEELNYTPIKGRPCRIMWSQRDPAL 141
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
+ + +++ NL A+ + L + F FG ++S +V D G
Sbjct: 142 RKTGQG---------------NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDETG-A 185
Query: 243 TRVFGFISFSSD-AERDAALSLNGTV 267
++ +GF+ + +D A A +NG +
Sbjct: 186 SKGYGFVHYETDEAAAQAIKHVNGML 211
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ +E E+F+ +G V S ++R+ E G SRG G
Sbjct: 227 DRQSKFEE--MKANFTNVYVKNISPDVTDNEFRELFEKYGDVTSSSLARDQE-GKSRGFG 283
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +A A+ L+G+D G+E+ V + + R + K Y+
Sbjct: 284 FVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSYEAARLEKASKYQGV 343
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LY+ NL V + LR F FG + SA+V+ D
Sbjct: 344 N-LYIKNLDDDVDDDKLRQMFSEFGPITSAKVMRD 377
>gi|148907387|gb|ABR16827.1| unknown [Picea sitchensis]
Length = 432
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175
L E FK +G V+ + R+ TG +RG G++ + + D + GR++ ++
Sbjct: 22 LKEYFKVYGDVVETVIMRDKMTGRARGFGFIGFSEPTAVDRVL--QDKHTIDGRQVELKR 79
Query: 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
++ RNA+ S + K++VG L+ V +D + +F +FGT+ V+
Sbjct: 80 AVPREEHQRNAQKSGS---NVGAGPRTKKIFVGGLAPTVTEDDFKGYFEQFGTITDVVVM 136
Query: 236 HDRKGQTTRVFGFISFSSDAERDAALSLN 264
+D Q R FGFI+F S+ D + N
Sbjct: 137 YDHISQRPRGFGFITFDSEEAVDKVVMKN 165
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
K+++G +SW E L+ +F +G VV ++ D+ R FGFI FS D L
Sbjct: 7 KVFIGGISWETTEETLKEYFKVYGDVVETVIMRDKMTGRARGFGFIGFSEPTAVDRVLQD 66
Query: 264 NGTVESHTVAFQPLFP 279
T++ V + P
Sbjct: 67 KHTIDGRQVELKRAVP 82
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 11/161 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV NL E E+F+ +G + S +SR+ ETG SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNLDTEVSNEEFRELFEKYGEITSASISRDGETGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVY 199
++ SA A+ L+ + G+++ V + + R ++ A + +K Y
Sbjct: 281 FVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQHEAARV---EKASKY 337
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
+ + LYV NL+ + E LR+ F FG + SARV+ D G
Sbjct: 338 QGVN-LYVKNLTDDIDDEKLRDLFISFGNITSARVMRDTAG 377
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAATNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV NL V E+ R
Sbjct: 204 NGMLLNEKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNLDTEVSNEEFRE 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F ++G + SA + D + +R FGF++F
Sbjct: 255 LFEKYGEITSASISRDGETGKSRGFGFVNF 284
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + F
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVF 214
>gi|195435047|ref|XP_002065513.1| GK15493 [Drosophila willistoni]
gi|194161598|gb|EDW76499.1| GK15493 [Drosophila willistoni]
Length = 866
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 75 GKDNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVS 132
G D+ +D D++V P +++V +P+S D ++L EMF+ +G V S+ V
Sbjct: 352 GMDDDSCFRLDTDATVTYGEKEPDPDNIKMFVGQVPKSMDETQLREMFEEYGAVHSINVL 411
Query: 133 RNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVRFSIDMNSRTRNAEALIS 191
R+ TGIS+GC ++T + +A A AL + G ++ +S RN
Sbjct: 412 RDKATGISKGCCFVTFYTRRAALKAQDALHNVKTLNGMYHPIQMK-PADSENRNER---- 466
Query: 192 PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
KL+VG L+ + D+R F G + VL D+ GQ ++ F++F
Sbjct: 467 ------------KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQ-SKGCAFVTF 513
Query: 252 SSDAERDAALS 262
A + AA+S
Sbjct: 514 ---ATKHAAIS 521
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 781 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 840
Query: 160 ALDGSDVGGREMRVRF 175
A++G VG + ++V+
Sbjct: 841 AMNGFQVGTKRLKVQL 856
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 783 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 842
Query: 264 NG 265
NG
Sbjct: 843 NG 844
>gi|71405353|ref|XP_805302.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70868658|gb|EAN83451.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 358
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
N+P + EL ++F P+G +LS V RN TG S G ++ S A +AI + G
Sbjct: 2 NIPHKMEQRELEKLFAPYGQILSAAVMRNIHTGNSLGTAFVRYASTEEAMSAIKGMSGKR 61
Query: 166 VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR 225
+GGR + V+++ + EA KKI KL+V N+ + L + F
Sbjct: 62 IGGRAIAVQWAKKQHDYAPVGEAR----KKI------SKLFVRNIPLDINTVVLEDMFSM 111
Query: 226 FGTVVSARVLHDRKGQTTRVF----GFISFSSD--AERDA 259
+G V S + D + F FI+F +D AER A
Sbjct: 112 YGPVKSVSIHKDTAPDCDKNFERHIAFITFLADGAAERAA 151
>gi|326517876|dbj|BAK07190.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 345
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 84/206 (40%), Gaps = 32/206 (15%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV LP S EL + F +G VL V V R+ ETG RG ++ A A+
Sbjct: 7 KLYVGGLPPSAQQDELKDHFSRYGDVLCVRVVRDWETGQGRGFAFVEFADEEGAHAALQE 66
Query: 161 LDGSD--VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP---------------- 202
+ ++ G R + V+ + R +N + P +SP
Sbjct: 67 KEKANHVFGDRTVDVKRARTRPMRYQNEQPFYQRPSHQSPMQSPIHNQWYTQSSSNNSYA 126
Query: 203 ---------HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
K++VG L + E L+++F +FG + V+ + Q +R FGFI+F S
Sbjct: 127 GNGHRSNDAKKVFVGGLRGNITKEHLQSYFEKFGNITDVVVIREGGTQRSRGFGFITFDS 186
Query: 254 DAERDAAL-----SLNGTVESHTVAF 274
D L LNGT VA
Sbjct: 187 DEAMSKVLESKYHDLNGTKVETKVAI 212
>gi|226492336|ref|NP_001150253.1| ribonucleoprotein [Zea mays]
gi|195637832|gb|ACG38384.1| ribonucleoprotein [Zea mays]
Length = 275
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L N+P E+ +F+ G+V+ VE+S +RG ++TMGS A A+ L
Sbjct: 73 LVAQNIPWDCTADEMRALFESHGSVVGVELSMY-SANKNRGLAFVTMGSEEEALAALTHL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPEDL 219
+ + + R+++V F+ R R + P + V ++ K ++VGNL+W V+ L
Sbjct: 132 NSTILNDRKIKVDFA-----RPRKKQ----PKQPAVVSDATEKYVVFVGNLTWRVRNRHL 182
Query: 220 RNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F VVSA V+ H + + + F+SFSS AA+S NG +
Sbjct: 183 RELFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKI 232
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 254 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 292
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 278
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 279 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 338
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 339 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 206
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N D +L MF FG + S V + + G +G G++ ++A A+ L
Sbjct: 123 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKL 181
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAE------ALISPPKKIFVYESPHKLYVGNLSWAVK 215
+ S + G + ++ R+AE AL +++ Y+ + LYV N+ +
Sbjct: 182 NDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQ--ERVQRYQGVN-LYVKNIEEDLN 238
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQ 275
+ LR+HF FGT+ SA+V+ D G+ ++ FGF+ F E AA++ + S + +
Sbjct: 239 DDGLRDHFSSFGTITSAKVMVDENGR-SKGFGFVCFEKPEEATAAVT---DMNSKMIGAK 294
Query: 276 PLF 278
PL+
Sbjct: 295 PLY 297
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
RA +++ NL R D + + F FG +LS +V+ + E G S+G G++ + +SA+
Sbjct: 24 RAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQ 82
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI ++G + +++ V R + + L K ++V N +
Sbjct: 83 TAIEKVNGMLLSDKKVYVG---KFQPRAQRMKELGESGLKY------TNVFVKNFGEHLD 133
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNGTV 267
E L F +FG + SA V+ D +G+ + FGF++F+ DA A LN ++
Sbjct: 134 QEKLSAMFSKFGEITSAVVMTDAQGK-PKGFGFVAFADQDAAGQAVEKLNDSI 185
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 89/167 (53%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + +G+S+G G++ S +A+ AI L
Sbjct: 259 IFIKNLDKGIDHKALHDTFSAFGNILSCKVATDA-SGMSKGHGFVQFDSEEAAQKAIDKL 317
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R + E+ I+ E + ++V N+S + EDL
Sbjct: 318 NGMLLNDKQVFVGPFV----RKQERESTINK-------EKFNNVFVKNISEGMTEEDLTR 366
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS---LNG 265
FG FG + S V+ D G+ ++ FGF++F + DAA+S LNG
Sbjct: 367 IFGEFGPITSVVVMRDGDGK-SKCFGFVNFEN--VDDAAMSVEALNG 410
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 6/178 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V N+ +L +F FG + SV V R+ + G S+ G++ +++ A ++ AL
Sbjct: 350 VFVKNISEGMTEEDLTRIFGEFGPITSVVVMRDGD-GKSKCFGFVNFENVDDAAMSVEAL 408
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLR 220
+G +E V + + R ++ K V + LY+ NL ++ + L+
Sbjct: 409 NGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLK 468
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
F +FGT+ S +V+ D G +R GF++FSS E AL+ + S V +PL+
Sbjct: 469 ELFAQFGTITSCKVMRDPNG-LSRGSGFVAFSSPEEASRALA---EMNSKMVVSKPLY 522
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LY+ NL S +L E+F FGT+ S +V R+P G+SRG G++
Sbjct: 438 EQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDP-NGLSRGSGFV 496
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A A+ ++ V + + V + R +A S
Sbjct: 497 AFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFS 541
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLN 264
LYVG+L V L + F + G VVS RV D + + +G++++S+ +
Sbjct: 32 LYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDEKE----K 87
Query: 265 GTVESHTVAFQPLFPFNYVLFVSFTYS 291
T+ F L P NY +F +S
Sbjct: 88 ETIYEGFCVF-CLIPSNYAIFFVLGFS 113
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S+D LL+ F+ FG V+S +V + TG+S+ G+++ + A+ A+ +
Sbjct: 184 LFVKNLPDSWDTDALLKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEIM 243
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
++ G+++ + R+ +A K +I Y+ + LYV NL ++ E L
Sbjct: 244 HEKEIEGKKLYCGRAQKKAERSSELKAKYEKIKQERIQRYQGVN-LYVKNLDDSIDDEGL 302
Query: 220 RNHFGRFGTVVSARVLHD 237
R F +FG + SA+V+ D
Sbjct: 303 REAFKQFGNITSAKVITD 320
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL RS D L + F FG +LS +V + S+G G++ S SA+ AI +
Sbjct: 92 VFIKNLDRSIDNKALYDTFSSFGNILSCKVV--CDINGSKGFGFVHYESDESAQRAIEKV 149
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G + +++ V N R R F + H L+V NL + + L
Sbjct: 150 NGMLMEDKKVFVARFKSRNDRMRE-----------FGDAAKHFTNLFVKNLPDSWDTDAL 198
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
+F +FG VVS +V+ D ++ GFISF + +AA+ +
Sbjct: 199 LKNFEQFGEVVSHKVICDETTGLSKCHGFISFKEHDQAEAAVEI 242
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L + F+ G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S R+ + +++ NL ++ + L +
Sbjct: 64 NFDVIKGKPIRIMWSQRDPSLRRSGQG---------------NVFIKNLDRSIDNKALYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V+ D G ++ FGF+ + SD A+ +NG + F
Sbjct: 109 TFSSFGNILSCKVVCDING--SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVF 160
>gi|156101397|ref|XP_001616392.1| poly(A)-binding protein [Plasmodium vivax Sal-1]
gi|148805266|gb|EDL46665.1| poly(A)-binding protein, putative [Plasmodium vivax]
Length = 392
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 16/176 (9%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
+P S + L+V LP ++ +L + FK FG + S V++ + S+G G++
Sbjct: 110 QPNSENKKTTLFVFYLPPHWNDQDLFDKFKTFGNLESATVAKKNDK-TSKGYGFVVYTDP 168
Query: 152 NSAKNAIIALDGSDV-GGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+SA AI ++ +V G+ ++V +S N++ I P IFV+ P+
Sbjct: 169 HSAAMAISNMNKVEVYTGKRLKVLLK---SSSNENSKKKIKPGCTIFVFYLPN------- 218
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNG 265
W+ K DL+ HF +G ++ A + + G+ +R +GFI+F + +A +NG
Sbjct: 219 DWSDK--DLKRHFSHYGNILGATIKRETNGK-SRGYGFINFENQQSAINAVAGMNG 271
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 88 SSVEEPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
SS E + + +P C ++V LP + +L F +G +L + R G SRG G++
Sbjct: 196 SSNENSKKKIKPGCTIFVFYLPNDWSDKDLKRHFSHYGNILGATIKR-ETNGKSRGYGFI 254
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRV 173
+ SA NA+ ++G + G + ++V
Sbjct: 255 NFENQQSAINAVAGMNGFNAGNKYLKV 281
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 86/200 (43%), Gaps = 28/200 (14%)
Query: 84 VDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC 143
++D + E + ++V N P + +++ + F FGT+ +V + ++
Sbjct: 2 LEDLENKMEWNKNFQANSIFVYNFPSEWMENDIKKNFMIFGTINNVIIDKDINM-----Y 56
Query: 144 GYLTMGSINSAKNAIIALDGSDVGGREMR------VRFSIDMNSRTRNAEALISPPKK-- 195
Y+ + + A+ ++G +V G+ ++ V +DMN+ A P +
Sbjct: 57 AYIQFHDGEACQKAMEVMNGKEVSGKVLKVTARKVVEECMDMNATKIEAPQKTQPNSENK 116
Query: 196 ---IFV-YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+FV Y PH W +DL + F FG + SA V + +T++ +GF+ +
Sbjct: 117 KTTLFVFYLPPH--------W--NDQDLFDKFKTFGNLESATVA-KKNDKTSKGYGFVVY 165
Query: 252 SSDAERDAALSLNGTVESHT 271
+ A+S VE +T
Sbjct: 166 TDPHSAAMAISNMNKVEVYT 185
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + ++ R
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDSEIDDDEFRK 253
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 254 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 292
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL D E +MF+ FG + S +SR+ E G SRG G
Sbjct: 222 DRQSKFEE--MKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFG 278
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 279 FVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 338
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR FG +GT+ SA+V+ D
Sbjct: 339 N-LYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 56 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 115
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + G+ R+ +S + + + +++ NL A+ + L +
Sbjct: 116 NYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAIDNKALHD 160
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTVESHTVAF 274
F FG ++S +V D G ++ +GF+ + +++A +A +NG + + F
Sbjct: 161 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVF 213
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL S D +L +MF FG VLS +V+R+ +G+S+G G++ S S A
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G+ + + + V + ++ ++F +YV NL DL+
Sbjct: 92 NGTLIRNQHIHVCPFVSRGQWDKS---------RVFT-----NVYVKNLVETATDADLKR 137
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
FG FG + SA V+ D +G++ R FGF++F ++A A +NG V
Sbjct: 138 LFGEFGEITSAVVMKDGEGKSRR-FGFVNFEKAEAAVTAIEKMNGVV 183
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + ++L +F FG + S V ++ E G SR G++ +A AI +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPEDL 219
+G V +E+ V + +RT + +A K I ++ LYV NL +V L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
F FGT+ S +V+ G + V GF+ FS+ E A L +NG +
Sbjct: 240 EELFSEFGTITSCKVMVHSNGISKGV-GFVEFSTSEEASKAMLKMNGKM 287
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL S D ++L E+F FGT+ S +V + GIS+G G++ + A A++ +
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAMLKM 283
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 284 NGKMVGNKPIYVSLA 298
>gi|356536490|ref|XP_003536770.1| PREDICTED: nucleolar protein 13-like [Glycine max]
Length = 394
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++YV +P ++ F+ GT+ V+ PETG RG +T + +AK A +A
Sbjct: 150 KIYVGGIPYYSTEDDIRSYFESCGTITEVDCMTFPETGKFRGIAIITFKTEAAAKRA-LA 208
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
LDG+D+GG + I TR +A P+ + E +++YVGNLSW + E+LR
Sbjct: 209 LDGADMGG----LFLKIQPYKATRANKASDFAPE---ILEGYNRIYVGNLSWDITEEELR 261
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267
F + S R D++ R + + F AL+L+ V
Sbjct: 262 KFFNN-SEITSLRFGMDKETGEFRGYAHVDFGDSQSLKKALALDQNV 307
>gi|390176614|ref|XP_003736147.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388858698|gb|EIM52220.1| GA25725, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 595
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 84 VDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+D D++V P +++V +P+S D S+L EMF+ +G V S+ V R+ TGIS+
Sbjct: 122 LDADATVTYSDKEPDPDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISK 181
Query: 142 GCGYLTMGSINSAKNAIIALDG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
GC ++T + +A A AL + G ++ +S RN
Sbjct: 182 GCCFVTFFTRRAALKAQDALHNVKTLAGMYHPIQMK-PADSENRNE-------------- 226
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
KL+VG L+ + D+R F G + VL D+ GQ ++ F++F A + AA
Sbjct: 227 --RKLFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQ-SKGCAFVTF---ATKHAA 280
Query: 261 LS 262
+S
Sbjct: 281 IS 282
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 510 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 569
Query: 160 ALDGSDVGGREMRVRF 175
A++G VG + ++V+
Sbjct: 570 AMNGFQVGTKRLKVQL 585
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 512 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 571
Query: 264 NG 265
NG
Sbjct: 572 NG 573
>gi|194696360|gb|ACF82264.1| unknown [Zea mays]
gi|414869196|tpg|DAA47753.1| TPA: ribonucleoprotein [Zea mays]
Length = 275
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 10/168 (5%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L N+P E+ +F+ G+V+ VE+S +RG ++TMGS A A+ L
Sbjct: 73 LVAQNIPWDCTADEMRALFESHGSVVGVELSMY-SANKNRGLAFVTMGSEEEALAALTHL 131
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R+++V F+ + + A++S + +V ++VGNL+W V+ LR
Sbjct: 132 NSTILNDRKIKVDFARPRKKQPKQP-AVVSDDTEKYV------VFVGNLTWRVRNRHLRE 184
Query: 222 HFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F VVSA V+ H + + + F+SFSS AA+S NG +
Sbjct: 185 LFASAPGVVSAEVIFHTTTPRRSAGYAFVSFSSKESAGAAISAFNGKI 232
>gi|452989554|gb|EME89309.1| hypothetical protein MYCFIDRAFT_149907 [Pseudocercospora fijiensis
CIRAD86]
Length = 500
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ NL + D L F+ FG + V + + ++G S+G GY+ + A A+ A
Sbjct: 247 LFIGNLSWNVDEEWLTREFEEFGELKGVRIITDRDSGRSKGFGYVEFENAEDAAKALEAK 306
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF---VYESPHKLYVGNLSWAVKPED 218
+G+++ R +R+ FS+ + +N + ++ + E L+VGNLS+ +
Sbjct: 307 NGAELDNRAIRLDFSVPRQNNAQNPQQRGQERRQQYGDKASEPSQTLFVGNLSFDATEDM 366
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+R +F G++ R+ DR+ + FG++ S E AA
Sbjct: 367 VREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDEAKAA 408
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Query: 102 LYVCNLPRSFDISELL--EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L+V NL SFD +E + E F+ G++ + + + E+G +G GY+ MGSI+ AK A
Sbjct: 353 LFVGNL--SFDATEDMVREYFEEHGSINGIRLPTDRESGAPKGFGYVEMGSIDEAKAAYE 410
Query: 160 ALDGSDVGGREMRVRFSI 177
AL G+D+GGR MR+ +S
Sbjct: 411 ALQGADLGGRPMRLDYST 428
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 178 DMNSRTRNAEALISPPKKIFVYESPH---KLYVGNLSWAVKPEDLRNHFGRFGTVVSARV 234
D R + E SP K E P+ L++GNLSW V E L F FG + R+
Sbjct: 219 DSKKRKADEEPEQSP--KKAKTEDPNVTGNLFIGNLSWNVDEEWLTREFEEFGELKGVRI 276
Query: 235 LHDRKGQTTRVFGFISFSSDAERDAALSL 263
+ DR ++ FG++ F +AE DAA +L
Sbjct: 277 ITDRDSGRSKGFGYVEF-ENAE-DAAKAL 303
>gi|91786529|ref|YP_547481.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91695754|gb|ABE42583.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 134
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG FG++ SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG++ S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|398803602|ref|ZP_10562623.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
gi|398096229|gb|EJL86556.1| RRM domain-containing RNA-binding protein [Polaromonas sp. CF318]
Length = 133
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL + V+ EDL+ FG FG++ SA+V+ +R ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIA 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 48/82 (58%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NLP + +L + F FG++ S +V +TG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAG 63
Query: 161 LDGSDVGGREMRVRFSIDMNSR 182
++G +GGR + V + M +R
Sbjct: 64 MNGQSLGGRSITVNEARPMEAR 85
>gi|390176612|ref|XP_002132720.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858697|gb|EDY70122.2| GA25725, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 818
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 84 VDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
+D D++V P +++V +P+S D S+L EMF+ +G V S+ V R+ TGIS+
Sbjct: 345 LDADATVTYSDKEPDPDNIKMFVGQIPKSMDESQLREMFEEYGPVHSINVLRDKATGISK 404
Query: 142 GCGYLTMGSINSAKNAIIALDG-SDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYE 200
GC ++T + +A A AL + G ++ +S RN
Sbjct: 405 GCCFVTFFTRRAALKAQDALHNVKTLAGMYHPIQMK-PADSENRNER------------- 450
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
KL+VG L+ + D+R F G + VL D+ GQ ++ F++F A + AA
Sbjct: 451 ---KLFVGMLNKKLNENDVRKLFEVHGNIEECTVLRDQNGQ-SKGCAFVTF---ATKHAA 503
Query: 261 LS 262
+S
Sbjct: 504 IS 505
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C L++ +LP+ F ++L F PFG V+S +V + +T +S+ G+++ + +SA+ AI
Sbjct: 733 CNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIK 792
Query: 160 ALDGSDVGGREMRVRF 175
A++G VG + ++V+
Sbjct: 793 AMNGFQVGTKRLKVQL 808
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSL 263
L++ +L DL + F FG V+SA+V D++ ++ FGF+SF + D+ + A ++
Sbjct: 735 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 794
Query: 264 NG 265
NG
Sbjct: 795 NG 796
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
++V +L + S+L E F PFG + V ++ T S+G G+++ + A+NAI
Sbjct: 105 HIFVGDLSPQIETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHT 164
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK-----KIFVYESPHK--LYVGNLSWA 213
+DGS +G R +R ++ + + + ++F SP +Y G L+
Sbjct: 165 MDGSWLGSRAIRTNWASRKPNHKETGSYIGGHHRALNYDEVFAQSSPSNCTVYCGGLNQM 224
Query: 214 VKPED-LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AERDAALSLNGTVESH 270
ED LR F FG +V R+ D+ + FI F+S A R N +
Sbjct: 225 ASSEDFLRQAFDEFGEIVDIRLFKDKG------YAFIKFNSKESACRAIVARHNSDIGGQ 278
Query: 271 TVAF---------QPLFPFN 281
V QP FP++
Sbjct: 279 AVKCSWGKEQEPAQPQFPYD 298
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S P+ +P LYV NL + +F G + ++ P G C ++
Sbjct: 2 SFPSPQDGGQPRTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEP--GSDPYC-FVEF 58
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A +AI A++ GRE+RV ++ S + P H ++VG
Sbjct: 59 VNHSDASSAITAMNARMCLGRELRVNWA----SSAIQQQTPHRPDTS-----KHHHIFVG 109
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT 266
+LS ++ DLR F FG + RV+ D Q ++ +GF+SF++ + + A+ +++G+
Sbjct: 110 DLSPQIETSDLREAFSPFGEISDCRVVKDATTQKSKGYGFVSFTNKQDAENAIHTMDGS 168
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+KLYVGNL+++V+ + L+ F +FGTV SA+V+ DR+ ++ FGF+ SDAE AA++
Sbjct: 3 NKLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAIN 62
Query: 263 -LNG 265
+NG
Sbjct: 63 GMNG 66
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+LYV NL S L + F FGTV S +V + ETG S+G G++ MGS A+ AI
Sbjct: 4 KLYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAING 63
Query: 161 LDGSDVGGREMRV 173
++G + GR + V
Sbjct: 64 MNGQPLEGRAIVV 76
>gi|356527120|ref|XP_003532161.1| PREDICTED: uncharacterized protein LOC100805131 [Glycine max]
Length = 513
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 28/210 (13%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L++ + D L E F +G V+ + R+ TG +RG G++ G + A+ I
Sbjct: 41 KLFIGGISWDTDEERLKEYFGKYGEVIETVIMRDRVTGRARGFGFVVFGDPSVAERVI-- 98
Query: 161 LDGSDVGGREMRVRFSI----DMNSRTRNAEALISP-PKKIFVYESPHKLYVGNLSWAVK 215
+D + GR + + ++ N ++ A +SP P + K++VG L +
Sbjct: 99 MDKHIIDGRTVEAKKAVPRDDQQNINRQSGSAHVSPGPGRT------KKIFVGGLPSTIT 152
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-----SLNGTVESH 270
D + +F +FGT+ V++D Q R FGFI++ S+ D L LNG +
Sbjct: 153 ESDFKTYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEV 212
Query: 271 TVAF----------QPLFPFNYVLFVSFTY 290
A PL +NY L + Y
Sbjct: 213 KRAVPKELSPGPSRSPLIGYNYGLTRASNY 242
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 12/188 (6%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D + +EE +RA +YV NL + E ++F+ +G + S ++ + E G SRG G
Sbjct: 247 DRQAKIEE--ARAHYTNVYVKNLDPAVTQEEFEKLFEKYGKITSAAIATDQE-GKSRGFG 303
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNA-EALISPPKKIFVYE 200
++ A A+ L+ ++ G+++ R + + R A EA + +K+ Y+
Sbjct: 304 FVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAYEAAKN--EKLSKYQ 361
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
+ LY+ NL E L+ F FGT SA+V+ G +R FGF+ +S+ E + A
Sbjct: 362 GVN-LYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTPTG-ASRGFGFVCYSAPEEANKA 419
Query: 261 LS-LNGTV 267
++ +NG +
Sbjct: 420 VAEMNGKM 427
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 12/177 (6%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
+ RA +++ NL + D L + F FG +LS +V+ N E G S G G++ S ++
Sbjct: 162 QRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASN-EHG-SLGYGFVHYESNDA 219
Query: 154 AKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA 213
A+ AI ++G + +++ V I R +A I + + +YV NL A
Sbjct: 220 AEAAIKHVNGMLLNDKKVYVGHHISKKDR----QAKIEEARAHYT-----NVYVKNLDPA 270
Query: 214 VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270
V E+ F ++G + SA + D++G+ +R FGF++FS + A+ E H
Sbjct: 271 VTQEEFEKLFEKYGKITSAAIATDQEGK-SRGFGFVNFSEHEQAAKAVEELNDTEFH 326
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+++ E S+ + LY+ NLP FD L E F PFGT S +V R P TG SRG G++
Sbjct: 350 EAAKNEKLSKYQGVNLYIKNLPEDFDDERLQEEFAPFGTTTSAKVMRTP-TGASRGFGFV 408
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALI 190
+ A A+ ++G + R + V + + R + A +
Sbjct: 409 CYSAPEEANKAVAEMNGKMIENRPLYVALAQRKDVRHQQLAAQM 452
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + + L E+F G V S+ V R+ T S G Y+ + ++ A+ L
Sbjct: 82 LYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDSERALEQL 141
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + R + I ++ NL A+ + L +
Sbjct: 142 NYTPIRGRPCRIMWSQRDPGQRRAGQGNI---------------FIKNLDEAIDNKALHD 186
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
F FG ++S +V + G +GF+ + S+ +AA+ +NG +
Sbjct: 187 TFAAFGKILSCKVASNEHGSLG--YGFVHYESNDAAEAAIKHVNGML 231
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 17/213 (7%)
Query: 77 DNVGGNEVDDDSSVEEPRSR---------ARPCELYVCNLPRSFDISELLEMFKPFGTVL 127
DNV G E++D P R A+ +YV NL + +L E F G V
Sbjct: 178 DNVNGMELNDKQVYVGPFQRRADRSTQGEAKFNNVYVKNLSENLSDEKLREKFAEHGAVT 237
Query: 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE 187
S + ++ E G S+G G++ S A +A+ LDG + V + R +
Sbjct: 238 SCVIMKDEE-GKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELK 296
Query: 188 ALISPPKKIFVYE-SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF 246
A ++ + + + LY+ NL E LR F FGT+ S RV+ D G +R
Sbjct: 297 AKFEAERRERMEKMAGANLYIKNLEEGTDDEKLRELFNEFGTITSCRVMRDASG-ASRGS 355
Query: 247 GFISFSS-DAERDAALSLNGTVESHTVAFQPLF 278
F++FSS D A +NG + V +PL+
Sbjct: 356 AFVAFSSPDEATRAVTEMNGKM----VGAKPLY 384
>gi|358349448|ref|XP_003638749.1| RNA-binding protein [Medicago truncatula]
gi|355504684|gb|AES85887.1| RNA-binding protein [Medicago truncatula]
Length = 371
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L V +P D L E FG + V + TG SRG GY+T S++ AKN + +
Sbjct: 5 KLVVLGIPWHVDTDGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKNVLSS 64
Query: 161 LDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
+G R + V+ + E + +P KK+ +++V ++ +V E R
Sbjct: 65 E--HSLGDRTLEVKVAT-------PKEEMRAPVKKV------TRIFVARIAPSVTEETFR 109
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
+HF ++G + + DR +T R GFI+F++
Sbjct: 110 SHFEKYGDITDLYMPKDRGSKTHRGIGFITFAT 142
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 107/266 (40%), Gaps = 37/266 (13%)
Query: 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPC-ELYVCNL 107
RS G+ + +V D + V+ + G + EV + EE R+ + ++V +
Sbjct: 43 RSRGFGYVTFASVDDAKNVLSSEHSLGDRTL---EVKVATPKEEMRAPVKKVTRIFVARI 99
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA---LDGS 164
S F+ +G + + + ++ + RG G++T + +S +N + L GS
Sbjct: 100 APSVTEETFRSHFEKYGDITDLYMPKDRGSKTHRGIGFITFATADSVENLMKETHELGGS 159
Query: 165 DVG--------------GREMRVR-----FSIDMNSRTRNAEALISP-----PKKIFVYE 200
DV GR + +S + + TR A AL +P P I+
Sbjct: 160 DVVVDRATPKEDDFKPIGRTRTPQLGYSAYSTYIPASTRYA-ALGAPTMYDRPSSIYGRG 218
Query: 201 SP-----HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
P K++VG L EDLR +FGRFG ++ + D K R FGF++F+
Sbjct: 219 EPARGISKKIFVGRLPPEATTEDLRLYFGRFGHILDVYIPRDVKRPGHRGFGFVTFADSG 278
Query: 256 ERDAALSLNGTVESHTVAFQPLFPFN 281
D + VA P +
Sbjct: 279 VADRVSRRPHEICGQEVAIDSAAPLD 304
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL + EL ++F +G + S V R+ E G S+ G++ + A A+ AL
Sbjct: 205 VYVKNLGENTTDDELKKVFGAYGPISSAVVMRDNE-GKSKCFGFVNFELADDAAKAVEAL 263
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--IFVYESPHKLYVGNLSWAVKPEDL 219
+G +E V + + R A +K I Y+ + LY+ NL AV E L
Sbjct: 264 NGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKYQGVN-LYLKNLDDAVDDEKL 322
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278
R F +GT+ S +V+ D +GQ +R GF++FS+ E A++ + + V +PL+
Sbjct: 323 RELFAEYGTITSCKVMKDPQGQ-SRGSGFVAFSTPEEATRAVT---EMNTKMVGSKPLY 377
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 17/174 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV +L + ++L E+F G V+S+ V R+ T S G Y+ S A A+ L
Sbjct: 26 VYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRALELL 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V G+ +R+ FS S ++ A +++ NL A+ + L +
Sbjct: 86 NFTPVNGKPIRIMFSHRDPSLRKSGAA---------------NIFIKNLDKAIDNKALHD 130
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FG ++S +V D GQ ++ +GF+ F + +A+ +NG + + F
Sbjct: 131 TFSAFGGILSCKVATDSSGQ-SKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVF 183
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++ NL ++ D L + F FG +LS +V+ + +G S+G G++ SA++AI
Sbjct: 112 ANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATD-SSGQSKGYGFVQFEKEESAQSAIE 170
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++G + +++ V R E +S F + +YV NL ++L
Sbjct: 171 KVNGMLLNDKQVFV------GPFVRRQERDLSGGVSKF-----NNVYVKNLGENTTDDEL 219
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
+ FG +G + SA V+ D +G+ ++ FGF++F +D A +LNG
Sbjct: 220 KKVFGAYGPISSAVVMRDNEGK-SKCFGFVNFELADDAAKAVEALNG 265
>gi|71405355|ref|XP_805303.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70868659|gb|EAN83452.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 469
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 14/154 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L++ +LPR D +EL F P+G +LS V RN TG + G ++ + A+ A+
Sbjct: 26 LFIRHLPRVVDENELRMFFSPYGQILSAAVMRNIHTGENLGTAFVRYATNEQARTALHGC 85
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR + V ++ + T +A KKIF KL+V N+ V ++L
Sbjct: 86 NGRFLHGRAISVHWAKKRHDNTPIGDAR----KKIF------KLFVRNIPLDVSADELAR 135
Query: 222 HFGRFGTVVSARVLHD----RKGQTTRVFGFISF 251
F FG V S + D R R GF++F
Sbjct: 136 LFACFGPVGSVSLHKDTAVPRNKWMERRIGFVAF 169
>gi|425783198|gb|EKV21057.1| Nucleolin protein Nsr1, putative [Penicillium digitatum Pd1]
Length = 467
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
L++ NL + D + F FG + V + + ETG SRG GY+ S A A+
Sbjct: 211 ANLFIGNLSWNVDEEWVQREFSEFGELSGVRIVTDRETGRSRGFGYVEYNSAADAAKAME 270
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHK--LYVGNLSWAVKPE 217
A G+D+ GR + + ++ + T+ A+ + SP L+VGNL ++ +
Sbjct: 271 AKKGTDLDGRTINLDYAAPRQANTQGADRSQDRARSYGDQTSPESDTLFVGNLPFSATED 330
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNG 265
L FG G+V+ R+ +++ + FG++ FSS D + A +LNG
Sbjct: 331 ALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAALNG 379
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L+V NLP S L E+F G+VL + + ETG +G GY+ SI+ AK A AL
Sbjct: 318 LFVGNLPFSATEDALHEVFGAQGSVLGIRLPTEQETGRPKGFGYVQFSSIDEAKAAHAAL 377
Query: 162 DGSDVGGREMRVRFS 176
+G ++ GR +R+ FS
Sbjct: 378 NGHELEGRAIRLDFS 392
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 6/169 (3%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N FD +L E F +G V S +V + + G SRG G++ ++A+ A +
Sbjct: 195 VYIKNFGDEFDDEKLFECFSKYGKVTSHKVM-SSDDGKSRGFGFVCYEDPDAAERACDDM 253
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
D+ G+ + V + N R K ++ Y+ + LYV NL + E L
Sbjct: 254 HAKDMNGKTLFVGRAQKRNERQTELRRKFEQMKIERLNRYQGVN-LYVKNLDDTIDDERL 312
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
R F +GT+ SA+V+ + G+ FGF+ FSS E A++ +NG +
Sbjct: 313 RKEFAPYGTITSAKVMTE-GGRNKGGFGFVCFSSPEEATKAVTEMNGRI 360
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL ++ D + + F FG +LS +V+++ E G S+G G++ + SA NAI +
Sbjct: 102 IFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQD-EAGNSKGYGFVHFETEESAVNAITKV 160
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+++ V I R R + K F +Y+ N E L
Sbjct: 161 NGMLLNGKKVFVGRFIPRKDRERE----LGEKAKYFT-----NVYIKNFGDEFDDEKLFE 211
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F ++G V S +V+ G+ +R FGF+ +
Sbjct: 212 CFSKYGKVTSHKVMSSDDGK-SRGFGFVCY 240
>gi|18858613|ref|NP_571527.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu
antigen R) [Danio rerio]
gi|6694223|gb|AAF25187.1|AF184244_1 ribonucleoprotein [Danio rerio]
Length = 324
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 23/179 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
L V LP++ EL +F G V S ++ R+ G S G G++ + N A+ AI L
Sbjct: 20 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVNPNDAERAISTL 79
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + + ++V ++ + ++A LY+ L + +D+
Sbjct: 80 NGLRLQSKTIKVSYARPSSDSIKDAN-----------------LYISGLPKTMTQKDVEE 122
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLN-----GTVESHTVAF 274
FGR+G ++++RVL D+ +R FI F AE DA LN G E TV F
Sbjct: 123 MFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKF 181
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S V P + + +++ NL + D L +MF PFG V +V+V R+ T +G G++T
Sbjct: 230 SGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 289
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRF 175
M A AI +L+G +G + ++V F
Sbjct: 290 MTHYEEAAMAIASLNGYRLGDKILQVSF 317
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
+ LY+ LP++ ++ EMF +G +++ V + +G+SRG ++ A++A
Sbjct: 102 KDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDA 161
Query: 158 IIALDGSDVGG--REMRVRFSIDMNSRTRNAEAL--------------ISPPKKIFVYES 201
I L+G G +M V+F+ N + +N + + + + F + S
Sbjct: 162 IKDLNGQKPPGAAEQMTVKFAASPN-QVKNTQVIPQVYHQQSRRFGGPVHHQAQRFRF-S 219
Query: 202 PHK---------------------LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240
P +++ NL L FG FG V + +V+ D
Sbjct: 220 PMSVDHMSGMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNT 279
Query: 241 QTTRVFGFISFSSDAERDAAL-SLNG 265
+ FGF++ + E A+ SLNG
Sbjct: 280 NKCKGFGFVTMTHYEEAAMAIASLNG 305
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,764,602,814
Number of Sequences: 23463169
Number of extensions: 197325684
Number of successful extensions: 517421
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 12274
Number of HSP's successfully gapped in prelim test: 6998
Number of HSP's that attempted gapping in prelim test: 465183
Number of HSP's gapped (non-prelim): 45611
length of query: 302
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 161
effective length of database: 9,050,888,538
effective search space: 1457193054618
effective search space used: 1457193054618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)