BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022096
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NLP S S+L E+F GTV +VE+ + T SRG ++TMGS+ AK AI
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175
Query: 162 DGSDVGGREMRVRF-SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220
DGS VGGR ++V F + A I + FV +SPHKLYV NLSWA+ + LR
Sbjct: 176 DGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFV-DSPHKLYVANLSWALTSQGLR 234
Query: 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268
+ F +SA+V++DR +R FGFI+FSS ++AL VE
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVE 282
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158
P +LYV NL + L + F +S +V + +G SRG G++T S + +A+
Sbjct: 216 PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSAL 275
Query: 159 IALDGSDVGGREMRV 173
++ ++ GR +R+
Sbjct: 276 DTMNEVELEGRPLRL 290
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 20/223 (8%)
Query: 55 FRSVLAVVDEEAVVVEDEINGKDN---VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSF 111
F SVL+ D+ +V++D+ G D VG E + +EP A+ L+V NLP
Sbjct: 55 FVSVLSE-DDNTLVLDDQEQGGDFPSFVG--EAGETEEYQEPSEDAK---LFVGNLPYDI 108
Query: 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171
D L ++F+ G V EV N ET SRG G++TM ++ A A+ D+ GR +
Sbjct: 109 DSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLL 168
Query: 172 RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231
V + SR P + ++ +++YVGN+ W + L F G VVS
Sbjct: 169 TVNKAAPRGSR---------PERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVS 219
Query: 232 ARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG-TVESHTV 272
ARV+ DR+ +R FGF++ SS+AE A++ L+G T++ T+
Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTI 262
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ +YV N+P D + L ++F G V+S V + E+G SRG G++TM S
Sbjct: 184 PRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEA 243
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI LDG + GR +RV
Sbjct: 244 EMSEAIANLDGQTLDGRTIRV 264
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 90/167 (53%), Gaps = 10/167 (5%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+L+V NLP D L +F+ G V EV N +T SRG G++TM ++ A+ A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
+ DV GR + V N R E PP+ +E +++YVGN+ W + L
Sbjct: 196 MYNRYDVNGRLLTV------NKAARRGERPERPPR---TFEQSYRIYVGNIPWGIDDARL 246
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNG 265
F G VVSARV++DR+ +R FGF++ +S+AE DA +L+G
Sbjct: 247 EQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDG 293
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR+ + +YV N+P D + L ++F G V+S V + ETG SRG G++TM S
Sbjct: 223 PRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 282
Query: 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
+AI LDG + GR +RV + D + R
Sbjct: 283 EMSDAIANLDGQSLDGRTIRVNVAEDRSRR 312
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 83 EVDDDSSVEEPRSRARPCE---LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
+V D+ VE + + P E L+V NLP D +L +F G V EV N ET
Sbjct: 35 QVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDR 94
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVY 199
SRG G++TM ++ A+ A+ L+G D+ GR++ V + S R P+ F
Sbjct: 95 SRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER-------APRGDF-- 145
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RD 258
E ++YVGNL W V L F G VVSARV+ DR+ +R FGF++ SS++E D
Sbjct: 146 EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 259 AALSLNG 265
A +L+G
Sbjct: 206 AIAALDG 212
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 93 PRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
PR P C +YV NLP D S L ++F G V+S V + ETG SRG G++TM S
Sbjct: 141 PRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSE 200
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
+ +AI ALDG + GR +RV
Sbjct: 201 SEVNDAIAALDGQTLDGRAVRV 222
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 101/186 (54%), Gaps = 11/186 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D D VEE R+ + +++V NLP S D + L E+F+ G V VEV + TG SRG G
Sbjct: 72 DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS----RTRNAEALISPPKKIFVYE 200
++TM S + A +G ++ GR +RV NS R + + ++
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRV------NSGPPPEKRENSSFRGGSRGGGSFD 185
Query: 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260
S +++YVGNL+W V + L F G VV A+V++DR +R FGF+++SS E + A
Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245
Query: 261 L-SLNG 265
+ SL+G
Sbjct: 246 IESLDG 251
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ +V + ++G SRG G++T S NAI +L
Sbjct: 190 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 250 DGVDLNGRAIRV 261
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 80 GGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI 139
G ++++DD V E + +L+V NLP S D + L +F+ G V VEV + TG
Sbjct: 67 GFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGR 126
Query: 140 SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSR 182
SRG G++TM + + A +G ++ GR +RV R
Sbjct: 127 SRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGG 186
Query: 183 TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT 242
R+ + + +S +++YVGNLSW V L+ F G VV A+V++DR
Sbjct: 187 GRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGR 246
Query: 243 TRVFGFISFSSDAE-RDAALSLNG 265
+R FGF+++SS E DA SLNG
Sbjct: 247 SRGFGFVTYSSSKEVNDAIDSLNG 270
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
RS +YV NL D L E+F G V+ +V + ++G SRG G++T S
Sbjct: 201 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKE 260
Query: 154 AKNAIIALDGSDVGGREMRV 173
+AI +L+G D+ GR +RV
Sbjct: 261 VNDAIDSLNGVDLDGRSIRV 280
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 13/175 (7%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
EP A+ L+V NL + L +F+ GTV EV N ET SRG G++TM S+
Sbjct: 145 EPSEEAK---LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211
+ A+ A+ + D+ GR + V + SR P + VYE ++YVGNL
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRGSR---------PERAPRVYEPAFRVYVGNLP 252
Query: 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
W V L F G VV ARV++DR+ +R FGF++ S E + A+S L+G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
PR +YV NLP D L ++F G V+ V + ETG SRG G++TM ++
Sbjct: 237 PRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVD 296
Query: 153 SAKNAIIALDGSDVGGREMRV 173
AI ALDG ++ GR +RV
Sbjct: 297 ELNEAISALDGQNLEGRAIRV 317
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 18/202 (8%)
Query: 82 NEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
++++DD V E + +L+V NLP S D + L +F+ G V VEV + +G SR
Sbjct: 70 DQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSR 129
Query: 142 GCGYLTMGSINSAKNAIIALDGSDVGGREMRV-----------------RFSIDMNSRTR 184
G G++TM + + A +G ++ GR +RV R R
Sbjct: 130 GFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGR 189
Query: 185 NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244
+ + + +S +++YVGNLSW V L+ F G VV A+V++DR +R
Sbjct: 190 DGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSR 249
Query: 245 VFGFISFSSDAE-RDAALSLNG 265
FGF+++SS E DA SLNG
Sbjct: 250 GFGFVTYSSAKEVNDAIDSLNG 271
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINS 153
RS +YV NL D L E+F G V+ +V + ++G SRG G++T S
Sbjct: 202 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261
Query: 154 AKNAIIALDGSDVGGREMRV 173
+AI +L+G D+ GR +RV
Sbjct: 262 VNDAIDSLNGIDLDGRSIRV 281
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 95/171 (55%), Gaps = 12/171 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV N+PR+ + EL + + G + EV + +G SR G++TM ++ A I L
Sbjct: 86 LYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKL 145
Query: 162 DGSDVGGREMRVRFSID----MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+ +++GGR+++V + M+ T AE FV ESP+K+Y+GNL+ V E
Sbjct: 146 NDTEIGGRKIKVNITEKPLEGMDIATTQAE------DSQFV-ESPYKVYIGNLAKTVTNE 198
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
L++ F G V+ A+V + FGF+SFSS+ E +AA+ +LN +V
Sbjct: 199 LLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSV 249
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 25 KRFGFTSLPTL--INFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+RFGF ++ T+ N KL+ G R + + + E + G D +
Sbjct: 125 RRFGFVTMKTVEDANAVIEKLNDT-----EIGGRKI------KVNITEKPLEGMD-IATT 172
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
+ +D VE P ++Y+ NL ++ L + F G VL +V R P T S G
Sbjct: 173 QAEDSQFVESP------YKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNG 226
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRV 173
G+++ S + AI AL+ S + G+++RV
Sbjct: 227 FGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
E +LYVGN+ + ++LR G + A V++D+ +R FGF++ + + +A
Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140
Query: 260 AL-SLNGT 266
+ LN T
Sbjct: 141 VIEKLNDT 148
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 41/212 (19%)
Query: 83 EVDDD--SSVEEPRSRA--RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG 138
EV++D + V P+ ++ +L+V NLP + D ++L ++F+ G V VEV + TG
Sbjct: 70 EVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITG 129
Query: 139 ISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKK--- 195
SRG G++TM S++ + A +G ++ GR +RV A PPK+
Sbjct: 130 RSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV-------------NAGPPPPKREDG 176
Query: 196 --------------------IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL 235
S +++YVGNLSW V L + F G VV ARV+
Sbjct: 177 FSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVI 236
Query: 236 HDRKGQTTRVFGFISFSSDAE-RDAALSLNGT 266
+DR ++ FGF+++ S E ++A SL+G
Sbjct: 237 YDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGA 268
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 12/96 (12%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ V + ++G S+G G++T S +NAI +L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIF 197
DG+D+ GR++RV +EA PP++ +
Sbjct: 266 DGADLDGRQIRV------------SEAEARPPRRQY 289
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 92/171 (53%), Gaps = 5/171 (2%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
+++V NL S D + L E+F+ G V VEV + TG SRG G++TM S + A
Sbjct: 87 LKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQ 146
Query: 160 ALDGSDVGGREMRVRF----SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
+G ++ GR +RV NS R + + ++S +++YVGNL+W V
Sbjct: 147 QFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVD 206
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265
+ L F G VV A+V++DR +R FGF+++SS E + A+ SL+G
Sbjct: 207 QDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL D L +F G V+ +V + ++G SRG G++T S NAI +L
Sbjct: 196 VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 255
Query: 162 DGSDVGGREMRV 173
DG D+ GR +RV
Sbjct: 256 DGVDLNGRAIRV 267
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV NL D ++ E+FKPFG V SV + + E G SRG G
Sbjct: 226 DRESKFEE--MKANFTNVYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFG 282
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA NA+ ++ ++ G+++ V + R + L + K+ Y+
Sbjct: 283 FVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGV 342
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 343 N-LFVKNLDDSIDSEKLEEEFKPFGTITSARVMVDDAGK-SKGFGFVCFSSPEEATKAIT 400
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 401 ---EMNQRMIQGKPLY 413
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ AI L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S V GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 120 NYSLVDGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 164
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 165 TFSAFGRILSCKVATDELGQ-SKCFGFVHY 193
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+S+ E S+ + L+V NL S D +L E FKPFGT+ S V + + G S+G G++
Sbjct: 329 ESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFV 387
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
S A AI ++ + G+ + V + + R E I
Sbjct: 388 CFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQ 432
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +TG SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + ++G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ S + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDESIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDNVG--------GNEVDDDSSV--------EEPRSRARPCELYVCNL 107
EEA E+NGK+ G ++ S + +E +R + LYV NL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F P+GT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAVTEMNGRIVS 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 391 NGKM----IGTKPLY 401
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
FG +S + D KG ++ FGF+++ + ++ R A LN
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELN 288
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG +
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGML 198
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 14/195 (7%)
Query: 88 SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
S VEE RA+ +Y+ N+ +E ++ KPFG +SV +SR+ E G+S+G G++
Sbjct: 217 SKVEE--LRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRD-EKGVSKGFGFVN 273
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH---K 204
+ SA+ A+ L+ +V G+++ + R AE S +K E+
Sbjct: 274 YENHESARKAVDELNEKEVNGKKLYAGRA--QTKSEREAELKKSHEEKRLENEAKSAGVN 331
Query: 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-L 263
LYV NL + LR F FGT+ S++V+ D G +R FGF+ +SS E A+S +
Sbjct: 332 LYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDDSG-VSRGFGFVCYSSPDEATKAVSEM 390
Query: 264 NGTVESHTVAFQPLF 278
NG + + +PL+
Sbjct: 391 NGKM----IGTKPLY 401
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL +S D L + F FG +LS +V + E G SRG ++ + +A AI A+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R E L + F +Y+ N+ V + +
Sbjct: 195 NGMLLNDKKVYVGHHVGKKERLSKVEEL----RAQFT-----NVYIKNVDLEVTDAEFED 245
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
FG +S + D KG ++ FGF+++ + ++ R A LN
Sbjct: 246 LVKPFGPTISVALSRDEKG-VSKGFGFVNYENHESARKAVDELN 288
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 48 LYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHL 107
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + G+ R+ +S + + + I ++ NL ++ + L +
Sbjct: 108 NYSLIKGQSCRIMWSQRDPALRKTGQGNI---------------FIKNLDQSIDNKALHD 152
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D G+ +R F F+ +S+ DAA+ ++NG +
Sbjct: 153 TFAAFGDILSCKVGTDENGK-SRGFAFVHYSTGEAADAAIKAVNGML 198
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 92/193 (47%), Gaps = 37/193 (19%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NLP D L ++F FG +LSV+V R+ +G SR G++ A+ A++ +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 162 DGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+G +V GR E++ RF R R + + LY
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV--------------NLY 297
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNG 265
V NL ++ + LR F +G + SA+V+ + G ++ FGF+ FSS E A++ +NG
Sbjct: 298 VKNLDDSIDDDKLRKEFSPYGVITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Query: 266 TVESHTVAFQPLF 278
+ V +PL+
Sbjct: 356 RI----VGTKPLY 364
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S R+ S IF + NL ++ + L +
Sbjct: 73 NFEMLKGQPIRIMWS------QRDPGLRKSGVGNIF---------IKNLEDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
F FG ++S +V D G +R FGF+ F + +A + A ++NG +
Sbjct: 118 TFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGML 162
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R + LYV NL S D +L + F P+G + S +V E G S+G G++ S A
Sbjct: 290 RYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEAT 347
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSR 182
A+ ++G VG + + V + R
Sbjct: 348 KAVTEMNGRIVGTKPLYVALAQRKEER 374
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 98/181 (54%), Gaps = 11/181 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV N FD +L E F+P+G + S +V + E G S+G G++ + +A+ A+ AL
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 162 DGSDVG-GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVKPED 218
+G D+G G+ + V + R + + K+ +ES LYV NL + +
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQK-RHESVFGVNLYVKNLDDTIDDDR 302
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +G + SA+V+ D +G+ ++ FGF+ F++ +E A++ LNG V V +PL
Sbjct: 303 LRIAFSPYGNITSAKVMTDEEGR-SKGFGFVCFNAASEATCAVTELNGRV----VGSKPL 357
Query: 278 F 278
+
Sbjct: 358 Y 358
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +LP+ + S L + F G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ V + +R+ +S S R+ +++ NL A+ + + +
Sbjct: 64 NFDLVRNKPIRIMWSQRDPSLRRSGVG---------------NVFIKNLDRAIDNKAIYD 108
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D KG ++ +GF+ F ++ + ++ +NG +
Sbjct: 109 TFSAFGNILSCKVATDEKG-NSKGYGFVHFETEEAANTSIDKVNGML 154
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV NL + D L F P+G + S +V + E G S+G G++ + + A A+ L
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTEL 347
Query: 162 DGSDVGGREMRVRFS 176
+G VG + + V +
Sbjct: 348 NGRVVGSKPLYVALA 362
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRV-RFSIDMNSRT---RNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+++ V R + +T R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGK+ VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + TG S+G G++ SA+ AI L
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R R+ P F +YV NL + ++LR
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENT----PTPRFT-----NVYVKNLPKEIGEDELRK 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS-SDAERDAALSLNG 265
FG+FG + SA V+ D+ G +R FGF++F ++A A +NG
Sbjct: 248 TFGKFGVISSAVVMRDQSG-NSRCFGFVNFECTEAAASAVEKMNG 291
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNA 157
R +YV NLP+ EL + F FG + S V R+ ++G SR G++ +A +A
Sbjct: 227 RFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASA 285
Query: 158 IIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH--KLYVGNLSWAVK 215
+ ++G +G + V + + R ++I +E LY+ NL +V
Sbjct: 286 VEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE-QERINRFEKSQGANLYLKNLDDSVD 344
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAF 274
E L+ F +G V S++V+ + +G +R FGF+++S+ E ALS +NG + +
Sbjct: 345 DEKLKEMFSEYGNVTSSKVMLNPQG-MSRGFGFVAYSNPEEALRALSEMNGKM----IGR 399
Query: 275 QPLF 278
+PL+
Sbjct: 400 KPLY 403
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 18/174 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY +L + L ++FK V+SV V R+ + S G Y+ + N A A+ AL
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + R +R+ S R+ +S IF+ NL ++ + L
Sbjct: 110 NYTPLFDRPIRIMLS------NRDPSTRLSGKGNIFIK---------NLDASIDNKALFE 154
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274
F FGT++S +V D G+ ++ +GF+ F + AA+ LNG + + F
Sbjct: 155 TFSSFGTILSCKVAMDVTGR-SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVF 207
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
+++ LY+ NL S D +L EMF +G V S +V NP+ G+SRG G++ + A
Sbjct: 328 KSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEAL 386
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A+ ++G +G + + + + R + +AL S
Sbjct: 387 RALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 13/181 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V + +G SRG G++ G+ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
+G +V GR + R + I+ + I ++I Y+ + LYV NL + +
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK-QERINRYQGVN-LYVKNLDDGIDDDR 309
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPL 277
LR F +GT+ S +V+ + G ++ FGF+ FSS E A++ +NG + V+ +PL
Sbjct: 310 LRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRI----VSTKPL 363
Query: 278 F 278
+
Sbjct: 364 Y 364
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ +L + L E F P G ++S+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S R+ S +F + NL ++ + L +
Sbjct: 73 NFEVIKGRPIRIMWS------QRDPGLRKSGVGNVF---------IKNLDDSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V+ D G +R +GF+ F + +A A ++NG +
Sbjct: 118 TFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGML 162
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E +R + LYV NL D L + F P+GT+ S +V E G S+G G++ S
Sbjct: 285 QERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFS 176
A A+ ++G V + + V +
Sbjct: 343 PEEATKAVTEMNGRIVSTKPLYVALA 368
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L ++F FG LSV+V + E+G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESPHKLYVGNLSWAVKPEDL 219
+G ++ G+++ V + R + K +I Y+ + LYV NL + E L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN-LYVKNLDDGIDDERL 310
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQPLF 278
R F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +PL+
Sbjct: 311 RKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKPLY 364
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
++V NL +S + L + FG +LS V + E G S+G G++ + +A+ AI +
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + GR++ F SR + EA + K F +Y+ N + E L++
Sbjct: 159 NGMLLNGRKV---FVGQFKSR-KEREAELGARAKEFP-----NVYIKNFGEDMDDERLKD 209
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFS--SDAERDAALSLNG 265
FG+FG +S +V+ D G+ ++ FGF+SF DA++ A +NG
Sbjct: 210 LFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQK-AVDEMNG 253
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 18/169 (10%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
LYV +L + L E F P G +LS+ + R+ T S Y+ A++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDL 219
++ + G+ +R+ +S S ++ I +V NL ++ + L
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FVKNLDKSINNKAL 115
Query: 220 RNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTV 267
+ FG ++S V+ D G ++ +GF+ F + +A A +NG +
Sbjct: 116 YDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGML 162
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKD------NVGGNEVDDDSSVEEPRS----------RARPCELYVCNL 107
E+A DE+NGK+ VG + + E R+ R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 95/182 (52%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N + L EMF +G LSV+V + + G S+G G+++ A+ A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ M R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FGT+ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + GR +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGRPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A DE+NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFGT+ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFS 176
+ + V +
Sbjct: 360 TKPLYVALA 368
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 99/196 (50%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S +EE +A +YV N+ ++ E E+F PFG + S+ + ++ E G S+G G
Sbjct: 235 DRESKLEE--MKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAE-GKSKGFG 291
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + RT + + K+ Y+
Sbjct: 292 FVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGV 351
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ S++V+ D G+ ++ FGF+ FS+ E A++
Sbjct: 352 N-LFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGK-SKGFGFVCFSTPEEATKAIT 409
Query: 263 LNGTVESHTVAFQPLF 278
+ V +PL+
Sbjct: 410 ---EMNQRMVNGKPLY 422
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 69 LYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEEL 128
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + V GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 129 NYTPVEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 173
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V D GQ ++ FGF+ + ++ AA+ S+NG +
Sbjct: 174 TFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEEAAQAAIESVNGML 219
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LSV+V+ + + G S+ G++ + +A+ AI ++
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V + R E + + + +YV N+ A ++
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKA---------NYTNIYVKNIDLAYTEKEFEE 266
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLN 264
F FG + S + D +G+ ++ FGF++F +A A LN
Sbjct: 267 LFAPFGKITSIYLEKDAEGK-SKGFGFVNFEEHEAAAKAVEELN 309
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E S+ + L+V NL D +L E FKPFGT+ S +V + + G S+G G++ +
Sbjct: 343 EKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTP 401
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ V G+ + V + + R E I
Sbjct: 402 EEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQ 441
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 36/197 (18%)
Query: 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIA 160
+L+V NLP + +L ++F+ G+V+ ++ N E G SRG G + M S+ A +AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQM 238
Query: 161 LDGSDVGGREMRVR-----------FSIDMNSRTRNAEALISPP-------------KKI 196
L +D GR + VR +S N T AE ++ + +
Sbjct: 239 LHNTDFMGRTLEVRLDRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQVEDL 298
Query: 197 FVYESPHK-----LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
+ PH +YVGNL WA +L + F G+V+ AR+ ++ G+ ++ FG + F
Sbjct: 299 VYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGR-SKGFGVVQF 357
Query: 252 SSDAERDAALS---LNG 265
+ E DAA S LNG
Sbjct: 358 EN--ENDAASSIEKLNG 372
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 2/162 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL EL E G VL+ E+ P G+S+GC + + A+ AI L
Sbjct: 79 VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
GR + +R + N+R ++ S E +L+VGNL + V+ +DL++
Sbjct: 138 SNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYNVRWQDLKD 197
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263
F + G+V+ A + +++G+ +R G + SS E A+ +
Sbjct: 198 LFRQAGSVIRADIQMNQEGR-SRGIGIVVMSSMKEAMHAIQM 238
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 99 PCE--LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKN 156
PC +YV NLP + LL++F G+V+ ++ P TG S+G G + + N A +
Sbjct: 307 PCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAAS 365
Query: 157 AIIALDGSDVGGREMRVRFS 176
+I L+G GGR +++ ++
Sbjct: 366 SIEKLNGYRYGGRPLQLSYA 385
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
++YVGNLS+ V+ +L+ G+ G V++ +L+ G ++ I +S+ E A+
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNG-LSKGCAIIEYSTAEEARTAI 134
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E+F FG LSV+V R+P G S+G G+++ A A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G ++ G+ + R + ++ + R E L ++I Y+ + LY+ NL + E
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQ--ERISRYQGVN-LYIKNLDDTIDDE 308
Query: 218 DLRNHFGRFGTVVSARV-LHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQ 275
LR F FG++ SA+V L D + ++ FGF+ FSS E A++ +NG + V +
Sbjct: 309 KLRKEFSPFGSITSAKVMLEDGR---SKGFGFVCFSSPEEATKAVTEMNGRI----VGSK 361
Query: 276 PLF 278
PL+
Sbjct: 362 PLY 364
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G VLS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ +++ NL ++ + L +
Sbjct: 73 NFDVIKGKPIRIMWSQRDPSLRKSGVG---------------NVFIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ + F+ F + D A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
+E SR + LY+ NL + D +L + F PFG++ S +V E G S+G G++ S
Sbjct: 285 QERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSS 342
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182
A A+ ++G VG + + V + R
Sbjct: 343 PEEATKAVTEMNGRIVGSKPLYVALAQRKEER 374
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ NL + D L E F FG +LS +V+ + E G+SRG G++ + + A++AI A+
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
DG + +E+ V + R E + K F +YV N+ E+
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEV----KAKFT-----NVYVKNIDQETSQEEFEE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255
FG++G + SA + D +G+ R FGF++F A
Sbjct: 238 LFGKYGKITSAVLEKDSEGK-LRGFGFVNFEDHA 270
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 95/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE +A+ +YV N+ + E E+F +G + S + ++ E G RG G
Sbjct: 206 DRQSKLEE--VKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFG 262
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ + G+++ V + R + + + K+ Y+
Sbjct: 263 FVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL ++ E L+ F FGT+ SA+V+ D G +R FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETG-NSRGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 EKN---QQIVAGKPLY 393
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E P+ LYV L + + L ++F P G+V S+ V R+ T S G Y+
Sbjct: 29 ETPKVETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHD 88
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210
+ AI L+ + + G+ R+ +S S + I Y+ NL
Sbjct: 89 HEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI---------------YIKNL 133
Query: 211 SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
A+ + L F FG ++S +V D G +R FGF+ F ++++ RDA +++G +
Sbjct: 134 HPAIDNKSLHETFSTFGNILSCKVATDENG-VSRGFGFVHFENESDARDAIEAVDGML 190
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F PFGT+ S +V R+ ETG SRG G++ +
Sbjct: 314 EKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 94/182 (51%), Gaps = 15/182 (8%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+Y+ N D L E F +G LSV+V + + G SRG G+++ A+ A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 162 DGSDVGGREM---RVRFSIDMNSR-TRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPE 217
+G D+ G+ + R + ++ + R E + +I Y+ + LYV NL + E
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQ--DRITRYQGVN-LYVKNLDDGIDDE 308
Query: 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTVESHTVAFQP 276
LR F FG++ SA+V+ + G ++ FGF+ FSS E A++ +NG + VA +P
Sbjct: 309 RLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRI----VATKP 362
Query: 277 LF 278
L+
Sbjct: 363 LY 364
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 18/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + L E F P G +LS+ V R+ T S G Y+ A+ A+ +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +R+ +S S ++ I ++ NL ++ + L +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGNI---------------FIKNLDKSIDNKALYD 117
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG ++S +V+ D G ++ +GF+ F + + A+ +NG +
Sbjct: 118 TFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 64 EEAVVVEDEINGKDN------VGGNEVDDDSSVEEPR----------SRARPCELYVCNL 107
E+A D++NGKD VG + + E R +R + LYV NL
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 108 PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167
D L + F PFG++ S +V E G S+G G++ S A A+ ++G V
Sbjct: 302 DDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 168 GREMRVRFSIDMNSR 182
+ + V + R
Sbjct: 360 TKPLYVALAQRKEER 374
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 40/240 (16%)
Query: 23 TPKRFGFTSLPTLINFQYPKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGN 82
+P+ F+S P+ I Q+ + S + +++ G SV + + + G +N G N
Sbjct: 24 SPQDTDFSSYPSTIGRQHSQQSQRYYQNNNCGLGSVGNMANSTNSLNS----GTNNSGTN 79
Query: 83 EVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
L V LP+ EL +F+ G + + + R+ +TG S G
Sbjct: 80 -------------------LIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYG 120
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
G++ GS A AI L+G V + ++V F+ + R+
Sbjct: 121 YGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTN--------------- 165
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
LYV NLS ++ E L FG++G +V +L D+ T R FI F+ E A+S
Sbjct: 166 --LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAIS 223
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 6/179 (3%)
Query: 92 EPRSRARP-CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
E RS+A +Y+ N D L ++F +G LSV+V + +G S+G G+++ S
Sbjct: 181 ELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDS 239
Query: 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPH-KLYVGN 209
+AK A+ ++G D+ G+ + V + R + + K+ + KLY+ N
Sbjct: 240 HEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKN 299
Query: 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS-LNGTV 267
L + E LRN F FG++ +V+ + +GQ ++ FG I FSS + A++ +NG +
Sbjct: 300 LDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQ-SKGFGLICFSSPEDATKAMTEMNGRI 356
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 18/174 (10%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
++ R LYV +L L F G VLS+ + R+ T S G Y+ + A
Sbjct: 5 AKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADA 64
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ ++ + G+ +R+ +S R+A S +F + NL ++
Sbjct: 65 QKALDTMNFDIIKGKSIRLMWS------QRDAYLRRSGIGNVF---------IKNLDKSI 109
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
+ L HF FG ++S++V+ D +G ++ + F+ F + + D A+ +NG +
Sbjct: 110 DNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKL 161
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 16/172 (9%)
Query: 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAK 155
R+ +++ NL S D L + F FG ++S +V+ + +G S+G G++ + SA+
Sbjct: 120 RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQ 178
Query: 156 NAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215
AI L+G + +++ V + R A K F +YV NL+ +
Sbjct: 179 KAIEKLNGMLLNDKQVYVGPFLRRQERDSTAN------KTKFT-----NVYVKNLAESTT 227
Query: 216 PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF--SSDAERDAALSLNG 265
+DL+N FG +G + SA V+ D +G+ ++ FGF++F + DA R A SLNG
Sbjct: 228 DDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAAR-AVESLNG 277
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+YV NL S +L F +G + S V ++ E G S+G G++ + + A A+ +L
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275
Query: 162 DGSDVGGREMRV-----RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216
+G +E V + + R R + L K LYV NL ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF----QSSNLYVKNLDPSISD 331
Query: 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276
E L+ F FGTV S++V+ D G T++ GF++F++ E A+S + + +P
Sbjct: 332 EKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVAFATPEEATEAMS---QLSGKMIESKP 387
Query: 277 LF 278
L+
Sbjct: 388 LY 389
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L + S+L + F GTV++V V R+ T S G GY+ + A AI L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + G+ +RV +S S R+ +++ NL ++ + L +
Sbjct: 98 NYIPLYGKPIRVMYSHRDPSVRRSGAG---------------NIFIKNLDESIDHKALHD 142
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267
F FG +VS +V D GQ ++ +GF+ ++++ A+ LNG +
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQ-SKGYGFVQYANEESAQKAIEKLNGML 188
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
+ +++E + + LYV NL S +L E+F PFGTV S +V R+P G S+G G++
Sbjct: 305 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFV 363
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+ A A+ L G + + + V + R +A S
Sbjct: 364 AFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFS 408
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 91/180 (50%), Gaps = 7/180 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ + +L ++F P+G + S+ + ++ E G S+G G
Sbjct: 220 DRESKFEE--IKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ +A A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FGT+ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 337 N-LFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 394
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ + S G Y+ + + AI L
Sbjct: 54 LYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEEL 113
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S R+ + I ++ NL A+ + L +
Sbjct: 114 NYSPIEGRPCRIMWSQRDPSARRSGDGNI---------------FIKNLHPAIDNKALHD 158
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D GQ ++ FGF+ +
Sbjct: 159 TFSTFGKILSCKVATDDMGQ-SKCFGFVHY 187
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 54 GFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCEL 102
G + + V+E + + EING+ G +EE + S+ + L
Sbjct: 282 GHEAAVKAVEE---LNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNL 338
Query: 103 YVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162
++ NL + D +L E FKPFGT+ S V + ETG S+G G++ S A AI ++
Sbjct: 339 FIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMN 397
Query: 163 GSDVGGREMRVRFSIDMNSRTRNAEALIS 191
G+ + V + + R E I
Sbjct: 398 QRMFFGKPLYVALAQRKDVRRSQLEQQIQ 426
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FGTV A ++ D++ R FGF+ F + DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P + A+ +L+V L +L+E F FGTV E+ + ++G RG G++ + +
Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHD 150
Query: 153 SAKNAII 159
+A A +
Sbjct: 151 AADKAAV 157
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 87 DSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL 146
DS +EE ++A LYV N+ + E+F FG ++S + ++ + G +G G++
Sbjct: 208 DSQLEE--TKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFV 264
Query: 147 TMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR----TRNAEALISPPKKIFVYESP 202
A A+ AL+ S++ G ++ V + N R + EA +K+ Y+
Sbjct: 265 NYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRL--EKMAKYQGV 322
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL +V E L F +GT+ SA+V+ G+ ++ FGF+ FS+ E A++
Sbjct: 323 N-LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGK-SKGFGFVCFSTPEEATKAIT 380
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 381 ---EKNQQIVAGKPLY 393
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL D L + F FG +LS +++ + E G S+G G++ +AK AI AL
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G+E+ V + R ++ + K + LYV N++ E +
Sbjct: 187 NGMLLNGQEIYVAPHLSRKER----DSQLEETKAHYT-----NLYVKNINSETTDEQFQE 237
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F +FG +VSA + D G+ + FGF+++
Sbjct: 238 LFAKFGPIVSASLEKDADGK-LKGFGFVNY 266
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV +L S + L ++F P G+V S+ V R+ T S G Y+ + + AI L
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S S + I ++ NL + + L +
Sbjct: 100 NYTPIKGRLCRIMWSQRDPSLRKKGSGNI---------------FIKNLHPDIDNKALYD 144
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD-AERDAALSLNGTV 267
F FG ++S+++ D G+ ++ FGF+ F + A ++A +LNG +
Sbjct: 145 TFSVFGDILSSKIATDENGK-SKGFGFVHFEEEGAAKEAIDALNGML 190
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL S D +L E F P+GT+ S +V R E G S+G G++ +
Sbjct: 314 EKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTP 372
Query: 152 NSAKNAIIALDGSDVGGREMRV 173
A AI + V G+ + V
Sbjct: 373 EEATKAITEKNQQIVAGKPLYV 394
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G+S+G G++ + +A NAI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V+ E+ R
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D +G+ +R FGF++FS+ AA+
Sbjct: 242 LFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAV 280
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E ++F+ FG + S +SR+ E G SRG G
Sbjct: 210 DRQSKFEE--MKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ +V +++ V + + R + K Y+
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV 326
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V + LR FG +GT+ SA+V+ D
Sbjct: 327 N-LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 22/194 (11%)
Query: 77 DNVGGNEVDDDSSVEEPRSRARP--CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN 134
DN EV ++VE P + ++P LYV L S + L E+F G V S+ V R+
Sbjct: 20 DNAPAPEV---TAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRD 76
Query: 135 PETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK 194
T S G Y+ + A+ L+ + + G+ R+ +S + + +
Sbjct: 77 AVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQG------ 130
Query: 195 KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SS 253
+++ NL A+ + L + F FG ++S +V D G ++ +GF+ + ++
Sbjct: 131 ---------NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETA 180
Query: 254 DAERDAALSLNGTV 267
+A +A +NG +
Sbjct: 181 EAANNAIKHVNGML 194
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159
C+L++ L S L F+ FGT+ V NP+T SR G++T ++ A +A +
Sbjct: 7 CKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEA-DAAM 65
Query: 160 ALDGSDVGGREMRVRFSIDMNSRTR-NAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218
A V G + ++ ++ R A A + KL+VG L V D
Sbjct: 66 AASPHAVDGNTVELKRAVSREDSARPGAHAKVK------------KLFVGGLKGDVAEGD 113
Query: 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAALSLNGTVESHTVAFQPL 277
L HF +FG V A ++ D++ R FGF+ F S DA AA+ ++ H V +
Sbjct: 114 LIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVEVKKA 173
Query: 278 FP 279
P
Sbjct: 174 VP 175
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152
P + A+ +L+V L +L+E F FG V E+ + ++G RG G++ S +
Sbjct: 91 PGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHD 150
Query: 153 SAKNAII 159
+A A +
Sbjct: 151 AADKAAV 157
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 14/177 (7%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +YV N+ + E ++F+ FG + S ++R+ E+G SRG G
Sbjct: 223 DRQSKFEE--MKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ S ++A A+ AL+ D G+++ V + + R + K Y+
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGV 340
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259
+ LY+ NLS + E LR F +GT+ SA+V+ D ++T SD+E++A
Sbjct: 341 N-LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFAPEST---------SDSEKEA 387
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 10/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A+NAI +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +YV N+ E+ R+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEM----KANFT-----NVYVKNIDQDTTEEEFRD 254
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D + +R FGF++F+S AA+
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + L E+F G V S+ V R+ T S G Y+ + + A+ L
Sbjct: 57 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDL 116
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ + + GR R+ +S + + + +++ NL A+ + L +
Sbjct: 117 NYTLIKGRPCRIMWSQRDPALRKTGQG---------------NVFIKNLDTAIDNKALHD 161
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
F FG ++S +V D G ++ +GF+ + +++A ++A +NG +
Sbjct: 162 TFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAAQNAIKHVNGML 207
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 19/181 (10%)
Query: 89 SVEEPRSRARPC-ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLT 147
SV P +R ++V NLP S + L +MFK FG ++S +V+ E G SRG G++
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQ 158
Query: 148 MGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207
++A AI L+ + V +E+ V + R + E + LY+
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTN-------------LYM 205
Query: 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS--DAERDAALSLNG 265
NL V + LR F FG +VS + D + + R + F++F + DA R AA ++NG
Sbjct: 206 KNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARR-AAETVNG 263
Query: 266 T 266
T
Sbjct: 264 T 264
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 16/182 (8%)
Query: 96 RARPCE----LYVCNLPRSFDISE--LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149
R +P E LY+ NL D+SE L E F FG ++S+ ++++ E + RG ++
Sbjct: 193 RVKPEEKYTNLYMKNL--DADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFD 249
Query: 150 SINSAKNAIIALDGSDVGGREM---RVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLY 206
+ A+ A ++G+ G + + R + + R +K+ S +Y
Sbjct: 250 NPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVS--NIY 307
Query: 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSLNG 265
V N++ AV E+LR HF + GT+ S +++ D KG+ ++ FGF+ FS+ E DA + +G
Sbjct: 308 VKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFSTPEEAIDAVKTFHG 366
Query: 266 TV 267
+
Sbjct: 367 QM 368
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 91 EEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS 150
EE + A+ +YV N+ + EL + F GT+ S ++ + E G S+G G++ +
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFST 353
Query: 151 INSAKNAIIALDGSDVGGR---------------EMRVRFSIDMNSRTRNAEALISP 192
A +A+ G G+ +++V+F + +R ++ A ++P
Sbjct: 354 PEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNP 410
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL S D L E F FGT+LS +V+ + G S+G G++ +A+ AI L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V + R R+ + S +YV NL + ++L+
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVP---------SFTNVYVKNLPKEITDDELKK 257
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
FG++G + SA V+ D+ G +R FGF++F S +A A +NG
Sbjct: 258 TFGKYGDISSAVVMKDQSG-NSRSFGFVNFVSPEAAAVAVEKMNG 301
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LY+ NL S + +L EMF +G V S +V N + G+SRG G++ + A A+ +
Sbjct: 344 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEM 402
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
+G +G + + V + R + ++L +
Sbjct: 403 NGKMIGRKPLYVALAQRKEERQAHLQSLFT 432
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAV 290
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 21/180 (11%)
Query: 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTM 148
S +P S LYV L S + L E+F G V S+ V R+ T S G Y+
Sbjct: 45 SANQPHS----ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 149 GSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVG 208
+ + A+ L+ + + G+ R+ +S + + + +++
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIK 145
Query: 209 NLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
NL A+ + L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 146 NLDAAIDNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 200
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 201 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQEVTDEEFRK 251
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 252 MFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHDSAQAAV 290
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 220 DRQSKFEE--MKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ ++ G+++ V + + R + K Y+
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR F FGT+ SA+V+ D
Sbjct: 337 N-LYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 151
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 152 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 204
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 97/196 (49%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +YV N+ ++ ++F PFG + S+ + ++ + G S+G G
Sbjct: 220 DRESKFEE--MKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFG 276
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 277 FVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGV 336
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L+V NL + E L F FGT+ SA+V+ D G+ ++ FGF+ F++ E A++
Sbjct: 337 N-LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGK-SKGFGFVCFTTPEEATKAIT 394
Query: 263 LNGTVESHTVAFQPLF 278
+ + + +PL+
Sbjct: 395 ---EMNTRMINGKPLY 407
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 87 DSSVEEPRSRARPCE----LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRG 142
D S EE + E LYV L S + + L E+F P G V S+ V R+ + S G
Sbjct: 35 DQSAEEQGESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLG 94
Query: 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESP 202
Y+ + AI L+ + + GR R+ +S S R+ + I
Sbjct: 95 YAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNI------------ 142
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
++ NL A+ + L + F FG ++S +V D GQ ++ FGF+ +
Sbjct: 143 ---FIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQ-SKCFGFVHY 187
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151
E ++ + L+V NL + D +L E FKPFGT+ S +V + E G S+G G++ +
Sbjct: 328 EKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTP 386
Query: 152 NSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALIS 191
A AI ++ + G+ + V + + R E I
Sbjct: 387 EEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQ 426
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S +EE ++A +YV N+ E ++F +G ++S + ++ E G +G G
Sbjct: 218 DRISKLEE--AKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFG 274
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ N+A A+ L+G + + + V + R + + K+ ++
Sbjct: 275 FVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGV 334
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL ++ E L+ F +GT+ SARV+ D++G ++ FGF+ FSS E A++
Sbjct: 335 N-LFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEG-NSKGFGFVCFSSPEEATKAMT 392
Query: 263 LNGTVESHTVAFQPLF 278
VA +PL+
Sbjct: 393 ---EKNQQIVAGKPLY 405
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 12/165 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L E F FG VLS +V+ + E G SRG G++ + AK+AI A+
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + G E+ V + R E K F +YV N+ E+
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEA----KANFT-----NIYVKNIDVETTDEEFEQ 249
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNG 265
F ++G +VSA + D +G+ + FGF++F +A A LNG
Sbjct: 250 LFSQYGEIVSAALEKDAEGK-PKGFGFVNFVDHNAAAKAVEELNG 293
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 17/167 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L + + L ++F P G + S+ V R+ T S G Y+ + K AI L
Sbjct: 52 LYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQEL 111
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ +++ GR R+ +S + + R + +++ NL A+ + L
Sbjct: 112 NYAEINGRPCRIMWS-ERDPAIRK--------------KGSGNIFIKNLHPAIDNKALHE 156
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE-RDAALSLNGTV 267
F FG V+S +V D G +R FGF+ F +++ +DA ++NG +
Sbjct: 157 TFSTFGEVLSCKVALDENG-NSRGFGFVHFKEESDAKDAIEAVNGML 202
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ NL + E+ R
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNLDQEISEEEFRQ 247
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF+++S+ AA+
Sbjct: 248 MFEKFGEITSATLSRDQEGK-SRGFGFVNYSTHDSAQAAV 286
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ NL + E +MF+ FG + S +SR+ E G SRG G
Sbjct: 216 DRQSKFEE--MKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFG 272
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + +SA+ A+ ++ +V G+++ V + + R + K Y+
Sbjct: 273 FVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 332
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ + E LR F +GT+ SA+V+ D
Sbjct: 333 N-LYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD 366
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDAAI 147
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 200
Score = 38.5 bits (88), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISR 141
E S+ + LYV NL D +L EMF P+GT+ S +V R+ T I R
Sbjct: 324 EKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD--TNIER 371
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 11/160 (6%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+++ E G S+G G++ + +A NAI +
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + +++ V I R E + K F +Y+ N+ V E+ R
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEM----KANFT-----NVYIKNIDQDVTEEEFRE 248
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261
F +FG + SA + D++G+ +R FGF++FS+ AA+
Sbjct: 249 LFEKFGEITSATLSRDQEGK-SRGFGFVNFSTHESAQAAV 287
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D S EE +A +Y+ N+ + E E+F+ FG + S +SR+ E G SRG G
Sbjct: 217 DRQSKFEE--MKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA+ A+ ++ ++ +++ V + + R + K Y+
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV 333
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD 237
+ LYV NL+ V E LR FG +GT+ SA+V+ D
Sbjct: 334 N-LYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSA 154
S+ LYV L S + L E+F G V S+ V R+ T S G Y+ +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 155 KNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAV 214
+ A+ L+ + + G+ R+ +S + + + +++ NL A+
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQG---------------NVFIKNLDSAI 148
Query: 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF-SSDAERDAALSLNGTV 267
+ L + F FG ++S +V D G ++ +GF+ + +++A +A +NG +
Sbjct: 149 DNKALHDTFAAFGNILSCKVAQDEFG-NSKGYGFVHYETAEAANNAIKHVNGML 201
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 85 DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCG 144
D +S EE +A +Y N+ F E ++F+ +G + S+ + ++ E G S+G G
Sbjct: 219 DRESKFEE--MKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHE-GKSKGFG 275
Query: 145 YLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPK--KIFVYESP 202
++ + SA A+ L+ ++ G+++ V + R + + K+ Y+
Sbjct: 276 FVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGV 335
Query: 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALS 262
+ L++ NL + E L F FG++ SARV+ D G+ ++ FGF+ FSS E A++
Sbjct: 336 N-LFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGK-SKGFGFVCFSSPEEATKAIT 393
Query: 263 LNGTVESHTVAFQPLF 278
+ + +PL+
Sbjct: 394 ---EMNQRMIYGKPLY 406
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
LYV L S + + L E+F P G V S+ V R+ T S G Y+ + AI L
Sbjct: 53 LYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDL 112
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+ S + GR R+ +S S RN + I ++ NL A+ + L +
Sbjct: 113 NYSLIEGRPCRIMWSQRDPSLRRNGDGNI---------------FIKNLHPAIDNKALHD 157
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISF 251
F FG ++S +V D G ++ FGF+ +
Sbjct: 158 TFTAFGKILSCKVATDDMG-ISKCFGFVHY 186
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 57 SVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPR-----------SRARPCELYVC 105
S + VDE + + EING+ G +EE + S+ + L++
Sbjct: 284 SAVKAVDE---LNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIK 340
Query: 106 NLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD 165
NL + D +L E FKPFG++ S V + ETG S+G G++ S A AI ++
Sbjct: 341 NLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAITEMNQRM 399
Query: 166 VGGREMRVRFSIDMNSRTRNAEALIS 191
+ G+ + V + + R E I
Sbjct: 400 IYGKPLYVALAQRKDVRRSQLEQQIQ 425
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161
+++ NL + D L + F FG +LS +V+ + + GIS+ G++ + +A+ AI +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENV 199
Query: 162 DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221
+G + RE+ V I R E + K F +Y N+ E+ +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEM----KANFT-----NVYAKNIDLDFSEEEFKK 250
Query: 222 HFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253
F +G + S + D +G+ ++ FGF++F +
Sbjct: 251 LFEAYGKITSIYLEKDHEGK-SKGFGFVNFEN 281
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,995,963
Number of Sequences: 539616
Number of extensions: 4639903
Number of successful extensions: 13408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 247
Number of HSP's that attempted gapping in prelim test: 11154
Number of HSP's gapped (non-prelim): 1887
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)