Query 022096
Match_columns 302
No_of_seqs 264 out of 2549
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:59:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.3E-35 5E-40 264.2 22.2 174 97-296 105-279 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.9E-35 1.5E-39 265.3 24.0 232 50-294 42-351 (352)
3 TIGR01645 half-pint poly-U bin 100.0 5.8E-34 1.3E-38 267.9 20.9 181 97-294 105-286 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.7E-32 3.6E-37 249.7 21.5 169 99-293 3-172 (352)
5 KOG0145 RNA-binding protein EL 100.0 2.8E-32 6E-37 224.1 16.8 234 47-293 77-359 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-31 3.5E-36 257.1 21.5 230 51-293 127-365 (562)
7 KOG0148 Apoptosis-promoting RN 100.0 1.1E-31 2.4E-36 221.7 16.6 179 99-295 62-241 (321)
8 TIGR01622 SF-CC1 splicing fact 100.0 4.2E-31 9.1E-36 248.5 22.6 177 97-290 87-264 (457)
9 TIGR01628 PABP-1234 polyadenyl 100.0 6.9E-30 1.5E-34 245.8 21.8 222 50-292 39-261 (562)
10 KOG0127 Nucleolar protein fibr 100.0 1.6E-29 3.6E-34 226.5 19.1 233 48-292 42-378 (678)
11 KOG0117 Heterogeneous nuclear 100.0 2.3E-29 4.9E-34 220.9 18.3 182 96-296 80-335 (506)
12 KOG0144 RNA-binding protein CU 100.0 5.1E-30 1.1E-34 224.1 13.8 170 98-293 33-207 (510)
13 KOG0131 Splicing factor 3b, su 100.0 9E-30 1.9E-34 199.1 12.0 171 99-296 9-181 (203)
14 KOG0145 RNA-binding protein EL 100.0 1.8E-29 4E-34 207.5 13.7 169 100-294 42-211 (360)
15 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.6E-28 7.7E-33 231.6 22.9 182 98-290 294-500 (509)
16 TIGR01648 hnRNP-R-Q heterogene 100.0 6.9E-28 1.5E-32 226.6 21.8 208 50-295 96-310 (578)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-27 2.8E-32 225.3 21.6 183 98-292 274-480 (481)
18 KOG0127 Nucleolar protein fibr 100.0 3.3E-28 7.2E-33 218.2 15.7 185 100-296 6-200 (678)
19 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.6E-27 3.5E-32 227.1 20.3 179 96-292 172-375 (509)
20 TIGR01648 hnRNP-R-Q heterogene 100.0 2.3E-27 4.9E-32 223.2 20.8 163 97-294 56-224 (578)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.3E-27 7.2E-32 222.4 21.1 157 99-270 2-161 (481)
22 TIGR01622 SF-CC1 splicing fact 99.9 6E-26 1.3E-30 213.5 23.4 226 50-291 128-447 (457)
23 KOG0124 Polypyrimidine tract-b 99.9 2.9E-26 6.3E-31 196.8 9.8 174 99-289 113-287 (544)
24 KOG0109 RNA-binding protein LA 99.9 8.2E-26 1.8E-30 188.8 10.6 150 100-295 3-153 (346)
25 KOG0144 RNA-binding protein CU 99.9 8E-25 1.7E-29 191.6 14.4 238 48-297 71-509 (510)
26 KOG0123 Polyadenylate-binding 99.9 4.7E-24 1E-28 192.3 16.9 198 52-269 36-234 (369)
27 KOG0110 RNA-binding protein (R 99.9 1.8E-24 3.8E-29 200.0 13.3 174 100-292 516-693 (725)
28 KOG0146 RNA-binding protein ET 99.9 2.1E-24 4.6E-29 178.4 11.7 189 98-298 18-371 (371)
29 TIGR01645 half-pint poly-U bin 99.9 5.7E-23 1.2E-27 193.8 22.9 129 50-178 146-283 (612)
30 KOG0123 Polyadenylate-binding 99.9 2E-23 4.3E-28 188.3 16.8 150 100-291 2-152 (369)
31 KOG4205 RNA-binding protein mu 99.9 2.7E-23 5.8E-28 181.3 11.1 160 98-269 5-164 (311)
32 KOG0148 Apoptosis-promoting RN 99.9 4.2E-23 9E-28 171.1 11.1 141 98-296 5-146 (321)
33 KOG0147 Transcriptional coacti 99.9 3.3E-23 7.2E-28 186.9 7.1 180 96-291 176-357 (549)
34 KOG0147 Transcriptional coacti 99.8 1.4E-20 3E-25 170.1 13.4 222 51-278 219-525 (549)
35 KOG0105 Alternative splicing f 99.8 3.9E-19 8.5E-24 139.8 16.1 161 99-269 6-176 (241)
36 KOG4206 Spliceosomal protein s 99.8 8.9E-19 1.9E-23 142.8 16.3 173 100-290 10-220 (221)
37 PLN03134 glycine-rich RNA-bind 99.8 7.1E-19 1.5E-23 138.9 11.6 84 98-181 33-116 (144)
38 KOG4211 Splicing factor hnRNP- 99.8 8.8E-18 1.9E-22 150.2 16.9 164 98-272 9-173 (510)
39 KOG4212 RNA-binding protein hn 99.8 1.1E-17 2.3E-22 147.3 17.1 169 99-269 44-282 (608)
40 PLN03134 glycine-rich RNA-bind 99.8 7.9E-18 1.7E-22 132.9 12.0 85 200-295 32-117 (144)
41 KOG0124 Polypyrimidine tract-b 99.7 6.2E-17 1.4E-21 139.6 15.9 229 51-279 153-533 (544)
42 TIGR01659 sex-lethal sex-letha 99.7 2.3E-17 5E-22 148.2 13.9 128 51-180 147-276 (346)
43 KOG1548 Transcription elongati 99.7 2.2E-16 4.8E-21 135.5 18.7 184 98-286 133-357 (382)
44 COG0724 RNA-binding proteins ( 99.7 6.5E-16 1.4E-20 134.8 16.2 163 99-261 115-284 (306)
45 KOG0110 RNA-binding protein (R 99.7 2.5E-16 5.3E-21 146.5 13.1 179 97-292 383-598 (725)
46 PF00076 RRM_1: RNA recognitio 99.7 1.3E-16 2.7E-21 110.4 8.2 70 102-172 1-70 (70)
47 KOG1457 RNA binding protein (c 99.7 1.3E-15 2.8E-20 123.5 13.9 166 100-269 35-274 (284)
48 KOG1190 Polypyrimidine tract-b 99.7 2.8E-15 6.1E-20 131.2 16.2 174 99-291 297-490 (492)
49 KOG0149 Predicted RNA-binding 99.7 1.4E-16 3E-21 130.3 7.2 79 99-178 12-90 (247)
50 KOG0122 Translation initiation 99.7 4E-16 8.7E-21 128.1 9.9 86 94-179 184-269 (270)
51 KOG0125 Ataxin 2-binding prote 99.7 3.9E-16 8.6E-21 133.1 9.6 81 97-179 94-174 (376)
52 KOG0106 Alternative splicing f 99.6 3.3E-16 7E-21 129.1 7.4 155 100-270 2-160 (216)
53 PF14259 RRM_6: RNA recognitio 99.6 1.6E-15 3.5E-20 105.0 9.0 70 102-172 1-70 (70)
54 KOG0120 Splicing factor U2AF, 99.6 6.7E-16 1.5E-20 141.5 8.7 187 98-284 288-495 (500)
55 KOG0113 U1 small nuclear ribon 99.6 8.6E-16 1.9E-20 129.5 8.2 85 96-180 98-182 (335)
56 KOG1190 Polypyrimidine tract-b 99.6 1.9E-15 4.1E-20 132.3 10.3 190 98-298 27-242 (492)
57 PF00076 RRM_1: RNA recognitio 99.6 3.6E-15 7.8E-20 103.0 9.1 65 205-270 1-66 (70)
58 KOG0122 Translation initiation 99.6 2.1E-15 4.7E-20 123.9 9.1 81 201-292 188-269 (270)
59 PLN03120 nucleic acid binding 99.6 5.2E-15 1.1E-19 125.1 10.4 77 99-179 4-80 (260)
60 KOG0121 Nuclear cap-binding pr 99.6 2.2E-15 4.8E-20 111.8 6.8 83 98-180 35-117 (153)
61 PLN03213 repressor of silencin 99.6 9.2E-15 2E-19 130.8 9.6 76 99-178 10-87 (759)
62 KOG0129 Predicted RNA-binding 99.6 7.6E-14 1.7E-18 126.0 15.2 180 98-282 258-456 (520)
63 KOG0149 Predicted RNA-binding 99.6 7.4E-15 1.6E-19 120.3 7.8 68 202-269 12-79 (247)
64 KOG0126 Predicted RNA-binding 99.6 7E-16 1.5E-20 121.2 1.4 83 98-180 34-116 (219)
65 KOG4207 Predicted splicing fac 99.6 5.1E-15 1.1E-19 118.7 6.0 85 95-179 9-93 (256)
66 PF14259 RRM_6: RNA recognitio 99.6 3.2E-14 7E-19 98.4 9.4 65 205-270 1-66 (70)
67 PLN03121 nucleic acid binding 99.5 3.9E-14 8.5E-19 117.9 10.0 78 98-179 4-81 (243)
68 PLN03120 nucleic acid binding 99.5 4.2E-14 9.1E-19 119.7 9.8 75 202-290 4-78 (260)
69 KOG0114 Predicted RNA-binding 99.5 7E-14 1.5E-18 100.0 8.6 81 97-180 16-96 (124)
70 KOG0121 Nuclear cap-binding pr 99.5 3.2E-14 6.8E-19 105.7 7.0 89 202-301 36-125 (153)
71 KOG1456 Heterogeneous nuclear 99.5 9.5E-13 2.1E-17 114.3 17.1 187 95-293 283-492 (494)
72 smart00362 RRM_2 RNA recogniti 99.5 7.8E-14 1.7E-18 96.0 8.5 72 101-174 1-72 (72)
73 KOG0107 Alternative splicing f 99.5 7.2E-14 1.6E-18 109.4 8.7 78 99-181 10-87 (195)
74 KOG0126 Predicted RNA-binding 99.5 3.4E-15 7.3E-20 117.4 0.8 76 203-289 36-112 (219)
75 smart00360 RRM RNA recognition 99.5 1.2E-13 2.5E-18 94.8 8.2 71 104-174 1-71 (71)
76 KOG4207 Predicted splicing fac 99.5 3.3E-14 7.2E-19 114.1 6.1 81 198-289 9-90 (256)
77 KOG0108 mRNA cleavage and poly 99.5 8.9E-14 1.9E-18 126.9 8.3 82 100-181 19-100 (435)
78 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.4E-18 103.7 7.2 88 94-181 67-154 (170)
79 KOG0117 Heterogeneous nuclear 99.5 2.8E-13 6.1E-18 120.1 11.0 126 49-185 204-337 (506)
80 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3.1E-18 117.6 8.6 80 200-292 94-174 (376)
81 KOG0111 Cyclophilin-type pepti 99.5 3.4E-14 7.5E-19 115.0 4.6 83 99-181 10-92 (298)
82 PLN03121 nucleic acid binding 99.5 3.5E-13 7.7E-18 112.3 9.9 73 201-276 4-77 (243)
83 KOG0113 U1 small nuclear ribon 99.4 5.9E-13 1.3E-17 112.5 9.6 79 200-289 99-178 (335)
84 cd00590 RRM RRM (RNA recogniti 99.4 1E-12 2.2E-17 90.9 9.2 74 101-175 1-74 (74)
85 KOG0130 RNA-binding protein RB 99.4 2.9E-13 6.3E-18 101.5 6.7 85 200-295 70-155 (170)
86 smart00362 RRM_2 RNA recogniti 99.4 9.4E-13 2E-17 90.5 8.9 64 204-269 1-65 (72)
87 KOG0131 Splicing factor 3b, su 99.4 3.8E-13 8.2E-18 106.1 7.5 132 50-182 48-180 (203)
88 KOG0107 Alternative splicing f 99.4 5E-13 1.1E-17 104.7 7.8 77 202-294 10-87 (195)
89 KOG4212 RNA-binding protein hn 99.4 9.8E-12 2.1E-16 110.1 16.1 77 98-175 214-290 (608)
90 smart00360 RRM RNA recognition 99.4 1.2E-12 2.6E-17 89.6 8.3 63 207-269 1-64 (71)
91 PLN03213 repressor of silencin 99.4 6.2E-13 1.4E-17 119.3 8.4 76 201-291 9-87 (759)
92 KOG0111 Cyclophilin-type pepti 99.4 1.8E-13 3.8E-18 110.9 4.3 82 201-293 9-91 (298)
93 KOG0114 Predicted RNA-binding 99.4 1.9E-12 4.2E-17 92.7 8.8 78 200-291 16-94 (124)
94 KOG4211 Splicing factor hnRNP- 99.4 1E-11 2.2E-16 111.7 15.6 170 98-271 102-348 (510)
95 KOG0120 Splicing factor U2AF, 99.4 1E-12 2.2E-17 120.8 8.7 164 99-269 175-357 (500)
96 KOG0108 mRNA cleavage and poly 99.4 1.4E-12 3.1E-17 119.1 8.1 81 203-294 19-100 (435)
97 KOG1365 RNA-binding protein Fu 99.4 7.4E-13 1.6E-17 115.3 5.7 167 100-269 162-350 (508)
98 KOG1456 Heterogeneous nuclear 99.4 3.2E-11 7E-16 104.9 15.4 176 92-286 24-203 (494)
99 smart00361 RRM_1 RNA recogniti 99.4 3E-12 6.6E-17 88.5 7.3 61 113-173 2-69 (70)
100 PF13893 RRM_5: RNA recognitio 99.3 5.1E-12 1.1E-16 83.3 7.6 56 116-176 1-56 (56)
101 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.7E-16 85.3 9.7 73 204-288 1-74 (74)
102 COG0724 RNA-binding proteins ( 99.3 6.9E-12 1.5E-16 109.2 9.5 78 202-290 115-193 (306)
103 smart00361 RRM_1 RNA recogniti 99.3 1.1E-11 2.4E-16 85.6 7.8 54 216-269 2-63 (70)
104 PF13893 RRM_5: RNA recognitio 99.3 1.2E-11 2.7E-16 81.5 7.0 55 219-289 1-56 (56)
105 KOG0415 Predicted peptidyl pro 99.3 8.8E-12 1.9E-16 107.7 6.3 84 97-180 237-320 (479)
106 KOG0128 RNA-binding protein SA 99.3 6.1E-13 1.3E-17 126.4 -1.1 136 99-269 667-803 (881)
107 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.6E-16 103.5 6.6 102 66-179 49-150 (346)
108 KOG0132 RNA polymerase II C-te 99.2 6.6E-11 1.4E-15 111.6 10.7 110 97-224 419-528 (894)
109 KOG4208 Nucleolar RNA-binding 99.2 7.1E-11 1.5E-15 95.3 8.5 84 96-179 46-130 (214)
110 KOG4210 Nuclear localization s 99.2 5E-11 1.1E-15 104.2 7.0 177 98-293 87-265 (285)
111 KOG4454 RNA binding protein (R 99.2 6.2E-12 1.3E-16 102.0 1.1 135 100-267 10-149 (267)
112 KOG4661 Hsp27-ERE-TATA-binding 99.2 1.5E-10 3.4E-15 105.7 10.1 87 94-180 400-486 (940)
113 KOG0146 RNA-binding protein ET 99.2 4.7E-11 1E-15 99.7 5.6 87 94-180 280-366 (371)
114 KOG4205 RNA-binding protein mu 99.1 1.4E-10 3.1E-15 101.7 8.4 153 98-265 96-256 (311)
115 KOG0105 Alternative splicing f 99.1 9.1E-11 2E-15 92.9 6.2 78 201-292 5-83 (241)
116 KOG0226 RNA-binding proteins [ 99.1 4.7E-11 1E-15 99.0 4.5 160 100-271 97-260 (290)
117 KOG4208 Nucleolar RNA-binding 99.1 2E-10 4.4E-15 92.6 7.8 82 199-291 46-129 (214)
118 KOG4206 Spliceosomal protein s 99.1 2.6E-10 5.6E-15 93.5 7.8 80 203-296 10-94 (221)
119 KOG0415 Predicted peptidyl pro 99.1 2.6E-10 5.5E-15 98.8 6.8 84 200-294 237-321 (479)
120 KOG1365 RNA-binding protein Fu 99.0 3.4E-09 7.4E-14 92.8 11.0 170 97-269 58-231 (508)
121 KOG0112 Large RNA-binding prot 99.0 4.9E-10 1.1E-14 107.4 4.5 164 96-294 369-533 (975)
122 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.6E-13 74.2 9.2 79 100-178 2-86 (97)
123 KOG4209 Splicing factor RNPS1, 98.9 4E-09 8.6E-14 89.4 6.5 85 94-179 96-180 (231)
124 KOG0153 Predicted RNA-binding 98.9 8.1E-09 1.8E-13 89.5 8.2 80 93-178 222-302 (377)
125 KOG4307 RNA binding protein RB 98.9 5E-08 1.1E-12 91.4 13.5 171 96-269 308-502 (944)
126 KOG0533 RRM motif-containing p 98.8 1.5E-08 3.4E-13 85.7 8.7 81 99-180 83-163 (243)
127 KOG0153 Predicted RNA-binding 98.8 2.6E-08 5.6E-13 86.4 8.2 78 197-291 223-302 (377)
128 KOG0132 RNA polymerase II C-te 98.7 2E-08 4.3E-13 95.2 7.3 74 203-293 422-496 (894)
129 KOG4660 Protein Mei2, essentia 98.7 1.4E-08 3.1E-13 93.1 6.0 159 98-269 74-238 (549)
130 KOG2193 IGF-II mRNA-binding pr 98.7 9.3E-10 2E-14 97.4 -1.6 150 100-289 2-154 (584)
131 KOG0116 RasGAP SH3 binding pro 98.6 7.4E-08 1.6E-12 87.9 7.4 79 99-178 288-366 (419)
132 KOG4209 Splicing factor RNPS1, 98.6 6E-08 1.3E-12 82.2 6.2 80 201-291 100-179 (231)
133 KOG4676 Splicing factor, argin 98.6 3.8E-08 8.3E-13 86.5 4.7 165 100-269 8-214 (479)
134 KOG0533 RRM motif-containing p 98.6 1.2E-07 2.7E-12 80.2 7.7 67 202-269 83-150 (243)
135 KOG1457 RNA binding protein (c 98.5 4.5E-07 9.9E-12 74.3 8.9 87 202-296 34-122 (284)
136 KOG0226 RNA-binding proteins [ 98.5 7.4E-08 1.6E-12 80.3 4.2 82 98-179 189-270 (290)
137 PF04059 RRM_2: RNA recognitio 98.5 8.8E-07 1.9E-11 64.4 9.3 83 203-292 2-87 (97)
138 KOG4307 RNA binding protein RB 98.5 4.3E-07 9.3E-12 85.3 8.3 77 99-176 434-511 (944)
139 KOG4661 Hsp27-ERE-TATA-binding 98.5 5E-07 1.1E-11 83.2 8.6 81 201-292 404-485 (940)
140 KOG0151 Predicted splicing reg 98.4 4.5E-07 9.7E-12 85.4 6.8 83 96-178 171-256 (877)
141 PF11608 Limkain-b1: Limkain b 98.4 7.5E-07 1.6E-11 61.9 5.9 68 100-177 3-75 (90)
142 KOG4660 Protein Mei2, essentia 98.4 2.3E-07 5E-12 85.3 3.7 66 200-270 73-139 (549)
143 KOG4454 RNA binding protein (R 98.4 2.4E-07 5.3E-12 75.6 2.7 76 200-288 7-83 (267)
144 KOG1548 Transcription elongati 98.3 1.6E-06 3.4E-11 75.5 7.8 77 202-290 134-219 (382)
145 KOG0116 RasGAP SH3 binding pro 98.3 1.1E-06 2.3E-11 80.5 7.1 78 203-291 289-366 (419)
146 KOG0128 RNA-binding protein SA 98.3 3.5E-08 7.5E-13 94.6 -4.2 165 97-270 569-736 (881)
147 KOG0106 Alternative splicing f 98.3 1.1E-06 2.4E-11 72.9 4.6 71 203-292 2-73 (216)
148 PF11608 Limkain-b1: Limkain b 98.2 1.2E-05 2.6E-10 55.9 7.3 71 203-294 3-79 (90)
149 PF08777 RRM_3: RNA binding mo 98.1 1.1E-05 2.4E-10 59.9 6.4 71 100-176 2-77 (105)
150 KOG1995 Conserved Zn-finger pr 98.1 4.9E-06 1.1E-10 73.0 4.7 85 96-180 63-155 (351)
151 KOG3152 TBP-binding protein, a 98.1 2E-06 4.3E-11 72.0 2.1 73 98-170 73-157 (278)
152 KOG4210 Nuclear localization s 98.0 8.2E-06 1.8E-10 71.6 6.0 81 99-180 184-265 (285)
153 KOG0151 Predicted splicing reg 98.0 9.3E-06 2E-10 76.8 6.4 79 200-289 172-254 (877)
154 PF08777 RRM_3: RNA binding mo 98.0 1.2E-05 2.6E-10 59.8 5.4 53 203-261 2-54 (105)
155 COG5175 MOT2 Transcriptional r 97.9 3E-05 6.4E-10 67.4 6.5 79 99-177 114-201 (480)
156 KOG4849 mRNA cleavage factor I 97.9 9.8E-06 2.1E-10 70.6 3.0 77 100-176 81-159 (498)
157 KOG1995 Conserved Zn-finger pr 97.9 1.8E-05 3.9E-10 69.5 4.6 83 200-293 64-155 (351)
158 COG5175 MOT2 Transcriptional r 97.8 5.9E-05 1.3E-09 65.6 6.6 80 201-291 113-202 (480)
159 KOG0115 RNA-binding protein p5 97.8 8.2E-05 1.8E-09 62.5 6.9 86 153-263 6-92 (275)
160 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00015 3.3E-09 53.1 6.8 67 203-270 7-80 (100)
161 KOG2314 Translation initiation 97.7 8.4E-05 1.8E-09 68.8 6.2 67 203-270 59-132 (698)
162 KOG1996 mRNA splicing factor [ 97.7 6.7E-05 1.4E-09 64.1 5.0 86 204-289 283-375 (378)
163 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.9E-09 46.4 4.9 52 203-261 2-53 (53)
164 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 3.9E-09 46.4 4.8 52 100-158 2-53 (53)
165 KOG2314 Translation initiation 97.5 0.00018 4E-09 66.7 5.7 79 99-178 58-143 (698)
166 KOG4849 mRNA cleavage factor I 97.2 0.00016 3.4E-09 63.3 1.8 69 203-271 81-152 (498)
167 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0015 3.4E-08 47.8 6.5 75 100-176 7-89 (100)
168 KOG1855 Predicted RNA-binding 97.2 0.00073 1.6E-08 60.8 5.6 70 97-166 229-311 (484)
169 KOG0129 Predicted RNA-binding 97.2 0.001 2.2E-08 61.4 6.6 64 96-159 367-431 (520)
170 KOG1855 Predicted RNA-binding 97.1 0.00042 9.2E-09 62.3 3.3 63 201-263 230-306 (484)
171 KOG3152 TBP-binding protein, a 97.1 0.00026 5.6E-09 59.5 1.8 69 203-271 75-156 (278)
172 PF08952 DUF1866: Domain of un 97.0 0.0023 5E-08 49.8 6.2 56 217-291 51-106 (146)
173 PF08952 DUF1866: Domain of un 96.9 0.0027 5.8E-08 49.5 6.0 72 100-180 28-108 (146)
174 PF10309 DUF2414: Protein of u 96.8 0.0067 1.5E-07 40.1 6.3 54 202-263 5-62 (62)
175 KOG2202 U2 snRNP splicing fact 96.8 0.00064 1.4E-08 57.3 1.7 63 114-177 83-146 (260)
176 KOG1996 mRNA splicing factor [ 96.7 0.0043 9.3E-08 53.3 6.3 64 114-177 301-365 (378)
177 PF08675 RNA_bind: RNA binding 96.5 0.021 4.5E-07 40.0 7.5 54 100-162 10-63 (87)
178 KOG0112 Large RNA-binding prot 96.5 0.0056 1.2E-07 60.1 6.4 80 95-180 451-532 (975)
179 KOG2416 Acinus (induces apopto 96.5 0.0027 5.8E-08 59.5 3.9 75 97-177 442-520 (718)
180 KOG2202 U2 snRNP splicing fact 96.5 0.0012 2.5E-08 55.8 1.2 61 217-289 83-145 (260)
181 KOG4676 Splicing factor, argin 96.2 0.0056 1.2E-07 54.7 4.1 71 203-273 8-81 (479)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0082 1.8E-07 49.0 4.5 80 99-178 7-97 (176)
183 PF10309 DUF2414: Protein of u 96.1 0.033 7.1E-07 36.9 6.5 55 99-161 5-62 (62)
184 PF08675 RNA_bind: RNA binding 96.1 0.031 6.7E-07 39.1 6.5 53 203-264 10-63 (87)
185 PF07576 BRAP2: BRCA1-associat 96.0 0.097 2.1E-06 39.1 9.4 65 203-269 14-80 (110)
186 KOG2416 Acinus (induces apopto 95.8 0.0083 1.8E-07 56.4 3.4 80 198-291 440-521 (718)
187 PF15023 DUF4523: Protein of u 95.7 0.075 1.6E-06 41.1 7.7 75 96-178 83-161 (166)
188 KOG2068 MOT2 transcription fac 95.7 0.0046 9.9E-08 54.4 1.2 79 99-178 77-162 (327)
189 KOG2193 IGF-II mRNA-binding pr 95.7 0.00054 1.2E-08 61.5 -4.6 130 41-177 25-155 (584)
190 KOG0115 RNA-binding protein p5 95.6 0.015 3.3E-07 49.2 4.1 76 100-176 32-111 (275)
191 PF10567 Nab6_mRNP_bdg: RNA-re 95.6 0.61 1.3E-05 40.5 13.8 171 98-269 14-219 (309)
192 KOG4285 Mitotic phosphoprotein 95.4 0.039 8.5E-07 47.8 5.9 63 203-272 198-260 (350)
193 PF07576 BRAP2: BRCA1-associat 95.1 0.36 7.9E-06 36.1 9.6 66 100-167 14-80 (110)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.049 1.1E-06 44.5 5.0 68 202-269 7-81 (176)
195 KOG0804 Cytoplasmic Zn-finger 94.7 0.29 6.2E-06 45.0 9.4 67 99-167 74-141 (493)
196 KOG2068 MOT2 transcription fac 94.5 0.022 4.7E-07 50.2 2.0 78 203-292 78-163 (327)
197 KOG2135 Proteins containing th 94.5 0.02 4.3E-07 52.5 1.8 75 98-179 371-446 (526)
198 KOG2591 c-Mpl binding protein, 94.3 0.13 2.8E-06 48.3 6.5 78 89-173 165-246 (684)
199 PF07292 NID: Nmi/IFP 35 domai 94.1 0.11 2.4E-06 37.0 4.6 72 144-224 1-74 (88)
200 PF04847 Calcipressin: Calcipr 94.0 0.13 2.8E-06 42.2 5.4 62 112-179 8-71 (184)
201 KOG0804 Cytoplasmic Zn-finger 93.3 0.24 5.2E-06 45.4 6.4 66 202-269 74-141 (493)
202 KOG2253 U1 snRNP complex, subu 93.2 0.051 1.1E-06 51.9 2.0 121 98-227 39-160 (668)
203 KOG4574 RNA-binding protein (c 92.8 0.062 1.3E-06 52.8 2.0 72 205-291 301-373 (1007)
204 PF03880 DbpA: DbpA RNA bindin 92.7 0.55 1.2E-05 32.3 6.2 58 110-176 12-74 (74)
205 KOG4285 Mitotic phosphoprotein 92.0 0.69 1.5E-05 40.3 7.1 75 99-181 197-272 (350)
206 KOG2591 c-Mpl binding protein, 91.9 0.84 1.8E-05 43.1 8.1 81 151-261 147-229 (684)
207 PF11767 SET_assoc: Histone ly 91.9 0.66 1.4E-05 31.2 5.5 55 110-173 11-65 (66)
208 PF15023 DUF4523: Protein of u 91.8 0.47 1E-05 36.8 5.3 70 201-289 85-159 (166)
209 PF04847 Calcipressin: Calcipr 91.4 0.41 8.9E-06 39.3 5.0 59 215-290 8-69 (184)
210 KOG4574 RNA-binding protein (c 90.3 0.18 3.9E-06 49.7 2.2 71 101-177 300-372 (1007)
211 KOG2135 Proteins containing th 90.2 0.14 3.1E-06 47.1 1.4 72 203-291 373-445 (526)
212 PF11767 SET_assoc: Histone ly 85.5 4 8.6E-05 27.4 5.8 48 213-269 11-59 (66)
213 KOG2318 Uncharacterized conser 84.6 6.2 0.00013 37.7 8.5 82 96-177 171-306 (650)
214 PF03880 DbpA: DbpA RNA bindin 84.3 4.5 9.7E-05 27.7 5.9 58 212-289 11-74 (74)
215 PF14111 DUF4283: Domain of un 83.2 1.6 3.5E-05 34.3 3.7 117 102-235 18-138 (153)
216 KOG4483 Uncharacterized conser 77.9 6.7 0.00015 35.8 6.0 62 200-268 389-451 (528)
217 KOG2253 U1 snRNP complex, subu 77.6 1.3 2.9E-05 42.7 1.7 60 201-269 39-99 (668)
218 KOG4213 RNA-binding protein La 74.2 4.7 0.0001 32.6 3.7 57 98-159 110-168 (205)
219 KOG4410 5-formyltetrahydrofola 73.9 6.7 0.00015 34.1 4.8 47 100-151 331-377 (396)
220 KOG2891 Surface glycoprotein [ 70.7 3.4 7.3E-05 35.7 2.3 76 91-166 141-247 (445)
221 KOG4019 Calcineurin-mediated s 67.4 5.4 0.00012 32.4 2.7 75 100-180 11-91 (193)
222 PRK14548 50S ribosomal protein 65.2 24 0.00053 24.9 5.4 54 205-261 23-78 (84)
223 KOG4483 Uncharacterized conser 63.6 16 0.00036 33.4 5.3 56 98-161 390-446 (528)
224 PF03468 XS: XS domain; Inter 60.0 11 0.00023 28.5 3.0 57 204-263 10-76 (116)
225 TIGR03636 L23_arch archaeal ri 59.8 38 0.00082 23.5 5.5 54 205-261 16-71 (77)
226 KOG2318 Uncharacterized conser 59.8 37 0.00081 32.7 7.1 83 199-281 171-308 (650)
227 PF02714 DUF221: Domain of unk 49.5 36 0.00077 30.4 5.2 55 144-223 1-55 (325)
228 PF03468 XS: XS domain; Inter 49.4 18 0.00039 27.3 2.8 49 101-152 10-67 (116)
229 KOG4410 5-formyltetrahydrofola 48.1 42 0.0009 29.4 5.0 48 202-254 330-377 (396)
230 PF07530 PRE_C2HC: Associated 46.4 30 0.00065 23.3 3.2 61 114-177 2-63 (68)
231 COG5193 LHP1 La protein, small 44.7 11 0.00025 34.4 1.2 61 99-159 174-244 (438)
232 PF15513 DUF4651: Domain of un 44.6 46 0.00099 22.0 3.7 18 114-131 9-26 (62)
233 smart00596 PRE_C2HC PRE_C2HC d 44.5 32 0.00069 23.3 3.0 61 114-177 2-63 (69)
234 TIGR02542 B_forsyth_147 Bacter 42.9 50 0.0011 24.8 4.1 114 107-254 11-129 (145)
235 KOG2891 Surface glycoprotein [ 41.8 28 0.0006 30.3 3.0 127 143-269 77-248 (445)
236 PF07292 NID: Nmi/IFP 35 domai 41.0 20 0.00043 25.6 1.8 25 97-121 50-74 (88)
237 KOG3702 Nuclear polyadenylated 40.9 65 0.0014 31.6 5.6 74 100-174 512-585 (681)
238 PF10567 Nab6_mRNP_bdg: RNA-re 40.2 50 0.0011 29.1 4.3 57 202-258 15-78 (309)
239 KOG1295 Nonsense-mediated deca 37.5 42 0.00092 30.6 3.6 67 100-166 8-77 (376)
240 KOG4365 Uncharacterized conser 37.4 7.1 0.00015 36.1 -1.2 77 100-177 4-80 (572)
241 KOG4365 Uncharacterized conser 36.9 9.9 0.00021 35.2 -0.4 64 203-267 4-68 (572)
242 PTZ00191 60S ribosomal protein 36.1 1.2E+02 0.0026 23.9 5.5 54 204-260 83-138 (145)
243 COG5193 LHP1 La protein, small 34.4 20 0.00044 32.8 1.1 60 202-261 174-243 (438)
244 PF03439 Spt5-NGN: Early trans 30.5 86 0.0019 21.9 3.7 24 140-163 43-66 (84)
245 PRK11901 hypothetical protein; 30.5 1.5E+02 0.0034 26.6 5.9 61 99-164 245-307 (327)
246 KOG1295 Nonsense-mediated deca 29.3 66 0.0014 29.4 3.5 68 202-269 7-78 (376)
247 PF11823 DUF3343: Protein of u 29.3 78 0.0017 21.3 3.2 30 142-171 2-31 (73)
248 CHL00030 rpl23 ribosomal prote 28.4 1.8E+02 0.004 20.9 5.1 34 205-238 21-56 (93)
249 KOG2295 C2H2 Zn-finger protein 27.6 8.8 0.00019 36.5 -2.3 72 99-170 231-302 (648)
250 KOG4019 Calcineurin-mediated s 27.2 87 0.0019 25.6 3.5 62 203-270 11-78 (193)
251 KOG2295 C2H2 Zn-finger protein 26.7 10 0.00022 36.2 -2.1 68 202-269 231-299 (648)
252 PRK01178 rps24e 30S ribosomal 26.0 1.9E+02 0.0041 21.1 4.8 46 213-259 30-80 (99)
253 PF04026 SpoVG: SpoVG; InterP 25.8 1.5E+02 0.0032 20.9 4.1 26 228-253 2-27 (84)
254 COG0150 PurM Phosphoribosylami 23.9 17 0.00037 32.7 -1.1 48 113-164 275-322 (345)
255 PF11411 DNA_ligase_IV: DNA li 23.9 49 0.0011 19.3 1.1 17 109-125 19-35 (36)
256 COG5638 Uncharacterized conser 23.6 2.4E+02 0.0052 26.2 5.9 37 96-132 143-184 (622)
257 cd04908 ACT_Bt0572_1 N-termina 23.0 2.2E+02 0.0047 18.4 6.5 47 217-267 16-63 (66)
258 COG0018 ArgS Arginyl-tRNA synt 22.3 7.4E+02 0.016 24.4 9.5 98 113-238 60-166 (577)
259 PF05953 Allatostatin: Allatos 22.1 67 0.0014 13.5 1.1 8 294-301 4-11 (11)
260 PRK08559 nusG transcription an 22.0 2.2E+02 0.0048 22.4 5.0 33 126-163 36-68 (153)
261 PF09707 Cas_Cas2CT1978: CRISP 21.3 2E+02 0.0043 20.4 4.1 47 100-149 26-72 (86)
262 PRK13259 regulatory protein Sp 21.1 1.9E+02 0.004 21.0 3.9 26 228-253 2-27 (94)
263 KOG4008 rRNA processing protei 21.1 71 0.0015 27.2 2.0 32 202-233 40-71 (261)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.3e-35 Score=264.19 Aligned_cols=174 Identities=25% Similarity=0.439 Sum_probs=157.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|+.||+|.+|+|++|..+++++|||||+|.++++|++|++.|++..+.++.|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
...... ....+|||+|||+.+++++|+++|++||.|..+.|++++.+++++|||||+|.+.++
T Consensus 185 ~p~~~~-----------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 185 RPGGES-----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREE 247 (346)
T ss_pred cccccc-----------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHH
Confidence 542211 123679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 257 RDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 257 A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
|++|+ .||+..+.+. ++.|.|.++....+.+
T Consensus 248 A~~Ai~~lng~~~~g~---------~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 248 AQEAISALNNVIPEGG---------SQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHhCCCccCCC---------ceeEEEEECCcccccc
Confidence 99999 9999988632 4789999988765543
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.9e-35 Score=265.29 Aligned_cols=232 Identities=27% Similarity=0.406 Sum_probs=184.3
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++|+|+.+...+++..+.+.+++....+......-.. ........++|||+|||.++++++|+.+|++||.|..+
T Consensus 42 g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~--~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~ 119 (352)
T TIGR01661 42 GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR--PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITS 119 (352)
T ss_pred CccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec--ccccccccceEEECCccccCCHHHHHHHHhccCCEEEE
Confidence 3477999988888888888888888876655443322111 11122345789999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEcccCcccccchhh-----------cc------
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSRTRNAEA-----------LI------ 190 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~~~~~~~~~~~~-----------~~------ 190 (302)
+++.+..++.++|||||+|.+.++|++|++.|||..+.| +.|.|.++............ ..
T Consensus 120 ~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T TIGR01661 120 RILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTI 199 (352)
T ss_pred EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCcccc
Confidence 999998889999999999999999999999999999977 56888887543311100000 00
Q ss_pred ---------------------------------------------CCC-------------CcccccCCCceEEEccCCC
Q 022096 191 ---------------------------------------------SPP-------------KKIFVYESPHKLYVGNLSW 212 (302)
Q Consensus 191 ---------------------------------------------~~~-------------~~~~~~~~~~~l~v~nlp~ 212 (302)
... ........+.+|||+|||+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~ 279 (352)
T TIGR01661 200 LTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSP 279 (352)
T ss_pred ccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCC
Confidence 000 0000011234699999999
Q ss_pred CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeecccc
Q 022096 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 213 ~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
.+++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+|+ .|||..|+ |+.|+|+|+.+
T Consensus 280 ~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~-----------gr~i~V~~~~~ 348 (352)
T TIGR01661 280 DTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG-----------NRVLQVSFKTN 348 (352)
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC-----------CeEEEEEEccC
Confidence 9999999999999999999999999999999999999999999999999 99999999 99999999998
Q ss_pred CCC
Q 022096 292 KPS 294 (302)
Q Consensus 292 k~~ 294 (302)
|..
T Consensus 349 ~~~ 351 (352)
T TIGR01661 349 KAY 351 (352)
T ss_pred CCC
Confidence 864
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.8e-34 Score=267.89 Aligned_cols=181 Identities=22% Similarity=0.386 Sum_probs=157.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|.+||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|.||.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
........... .........++|||+|||+++++++|+++|+.||.|.+++|.+|+.+|+++|||||+|.+.++
T Consensus 185 ~~~p~a~~~~~------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 185 SNMPQAQPIID------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred ccccccccccc------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 43211110000 000111234789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 257 RDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 257 A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
|.+|+ .|||..++ |+.|.|.++..++.
T Consensus 259 A~kAI~amNg~elg-----------Gr~LrV~kAi~pP~ 286 (612)
T TIGR01645 259 QSEAIASMNLFDLG-----------GQYLRVGKCVTPPD 286 (612)
T ss_pred HHHHHHHhCCCeeC-----------CeEEEEEecCCCcc
Confidence 99999 99999999 89999999887553
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.7e-32 Score=249.66 Aligned_cols=169 Identities=26% Similarity=0.453 Sum_probs=153.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..+|||+|||+++++++|+++|++||+|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
.... ....+|||+|||..+++++|+++|++||.|..++++.+..++.++|||||+|.+.++|.
T Consensus 83 ~~~~-----------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 83 SSDS-----------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cccc-----------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 3211 12368999999999999999999999999999999999888999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+|+ .|||..+.+. +..|.|.|+..+.
T Consensus 146 ~ai~~l~g~~~~g~---------~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGC---------TEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCC---------ceeEEEEECCCCC
Confidence 999 9999988742 4668888886655
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=224.11 Aligned_cols=234 Identities=26% Similarity=0.382 Sum_probs=191.4
Q ss_pred CCCCCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCe
Q 022096 47 WSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV 126 (302)
Q Consensus 47 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v 126 (302)
-...++.+|.++..+.+++++.+...+|+-....+.. .-+-.....+..+...|||.+||..+|..+|.++|++||.|
T Consensus 77 KitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI--KVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrI 154 (360)
T KOG0145|consen 77 KITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI--KVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRI 154 (360)
T ss_pred cccccccccceeeecChHHHHHHHhhhcceeeccceE--EEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhh
Confidence 3445788999999999999999988888854433322 22233344455667899999999999999999999999999
Q ss_pred eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEcccCcccccch---------hhccCCC--
Q 022096 127 LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMNSRTRNA---------EALISPP-- 193 (302)
Q Consensus 127 ~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~~~~~~~~~~---------~~~~~~~-- 193 (302)
..-+|+.|..+|.+||.+||.|...++|+.||+.|||..-.| .+|.|.++......+... ......+
T Consensus 155 ItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~h 234 (360)
T KOG0145|consen 155 ITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMH 234 (360)
T ss_pred hhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCccc
Confidence 999999999999999999999999999999999999999876 468999987543322110 0000000
Q ss_pred -----------------------------------CcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecC
Q 022096 194 -----------------------------------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238 (302)
Q Consensus 194 -----------------------------------~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~ 238 (302)
.-........+|||.||.++.+|.-|+++|.+||.|.+|+|++|.
T Consensus 235 h~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ 314 (360)
T KOG0145|consen 235 HQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDF 314 (360)
T ss_pred chhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecC
Confidence 000112234889999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 239 ~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
.+++++|||||.+.+-++|..|+ .|||..++ +++|+|+|+++|.
T Consensus 315 ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg-----------~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 315 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG-----------DRVLQVSFKTNKA 359 (360)
T ss_pred CcccccceeEEEecchHHHHHHHHHhcCcccc-----------ceEEEEEEecCCC
Confidence 99999999999999999999999 99999999 8999999999875
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.6e-31 Score=257.13 Aligned_cols=230 Identities=25% Similarity=0.362 Sum_probs=182.8
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCcc--C-CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCee
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE--E-PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVL 127 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~ 127 (302)
..++|+++.+...+++..+.+.+++....+........... . .......++|||+|||.++|+++|+++|+.||.|.
T Consensus 127 ~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~ 206 (562)
T TIGR01628 127 KSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEIT 206 (562)
T ss_pred CcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEE
Confidence 36789998888888888888888876554433321111000 0 11233457899999999999999999999999999
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC----CceEEEEEcccCcccccchhhccC-CCCcccccCCC
Q 022096 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG----GREMRVRFSIDMNSRTRNAEALIS-PPKKIFVYESP 202 (302)
Q Consensus 128 ~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~ 202 (302)
++.++++ .+|.++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++..+............ ...........
T Consensus 207 ~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~ 285 (562)
T TIGR01628 207 SAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQG 285 (562)
T ss_pred EEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCC
Confidence 9999998 56899999999999999999999999999999 999999988665443211110000 00001112345
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
.+|||+||++.+++++|+++|++||.|.+|+|+.| .+|+++|||||+|.+.++|.+|+ .|||+.++ |
T Consensus 286 ~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~-----------g 353 (562)
T TIGR01628 286 VNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG-----------G 353 (562)
T ss_pred CEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC-----------C
Confidence 78999999999999999999999999999999999 58999999999999999999999 99999999 8
Q ss_pred ceEEeeccccCC
Q 022096 282 YVLFVSFTYSKP 293 (302)
Q Consensus 282 ~~l~v~~a~~k~ 293 (302)
+.|.|.++..|.
T Consensus 354 k~l~V~~a~~k~ 365 (562)
T TIGR01628 354 KPLYVALAQRKE 365 (562)
T ss_pred ceeEEEeccCcH
Confidence 999999998764
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.1e-31 Score=221.73 Aligned_cols=179 Identities=24% Similarity=0.410 Sum_probs=154.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
...|||+.|...++-++|++.|.+||+|.+++|++|..|+++|||+||.|.+.++|++||..|||.=|.+|.|+-.|+.+
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
+............ ..-.......++|||+|++.-+++++|++.|++||.|.+|||++++ ||+||.|++.|.|.
T Consensus 142 Kp~e~n~~~ltfd-eV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAa 214 (321)
T KOG0148|consen 142 KPSEMNGKPLTFD-EVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAA 214 (321)
T ss_pred CccccCCCCccHH-HHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHH
Confidence 7622211100000 0000112345899999999999999999999999999999999995 69999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeeccccCCCC
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
+|| .+||+.++ |..++++|-+.....
T Consensus 215 hAIv~mNntei~-----------G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 215 HAIVQMNNTEIG-----------GQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHHhcCceeC-----------ceEEEEeccccCCCC
Confidence 999 99999999 889999997765543
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.98 E-value=4.2e-31 Score=248.49 Aligned_cols=177 Identities=27% Similarity=0.401 Sum_probs=153.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+.+++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999 69999999999999886
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
.............. . .......+|||+|||+.+++++|+++|++||.|..|.+.++..+|+++|||||+|.+.++
T Consensus 166 ~~~~~~~~~~~~~~--~---~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 166 QAEKNRAAKAATHQ--P---GDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred chhhhhhhhccccc--C---CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 53322111100000 0 001225899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 257 RDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 257 A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
|.+|+ .|||..+. |+.|.|.|+.
T Consensus 241 A~~A~~~l~g~~i~-----------g~~i~v~~a~ 264 (457)
T TIGR01622 241 AKEALEVMNGFELA-----------GRPIKVGYAQ 264 (457)
T ss_pred HHHHHHhcCCcEEC-----------CEEEEEEEcc
Confidence 99999 99999998 8999999975
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=6.9e-30 Score=245.83 Aligned_cols=222 Identities=27% Similarity=0.358 Sum_probs=179.0
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++|+|+.+...+++..+.+.+++....+......-...+.........+|||+|||.++++++|+++|+.||.|.+|
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~ 118 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSC 118 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCccee
Confidence 34678999988888888888888887755544433322222222233345789999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEcc
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 209 (302)
+++.+ .+|+++|||||+|.+.++|.+|++.+||..+.|+.|.|.....+..... ......++|||+|
T Consensus 119 ~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~------------~~~~~~~~l~V~n 185 (562)
T TIGR01628 119 KVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREA------------APLKKFTNLYVKN 185 (562)
T ss_pred Eeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccccc------------ccccCCCeEEEeC
Confidence 99988 5688999999999999999999999999999999999977654433220 0112336899999
Q ss_pred CCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeec
Q 022096 210 LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSF 288 (302)
Q Consensus 210 lp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~ 288 (302)
||+++++++|+++|+.||.|.++.+.++. +|+++|||||+|.+.++|.+|+ .|||..+... ..|+.+.|..
T Consensus 186 l~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~-------~~g~~l~v~~ 257 (562)
T TIGR01628 186 LDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLA-------KEGKKLYVGR 257 (562)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEeccc-------ccceeeEeec
Confidence 99999999999999999999999999995 7899999999999999999999 9999998722 2256666666
Q ss_pred cccC
Q 022096 289 TYSK 292 (302)
Q Consensus 289 a~~k 292 (302)
+..+
T Consensus 258 a~~k 261 (562)
T TIGR01628 258 AQKR 261 (562)
T ss_pred ccCh
Confidence 6544
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=226.53 Aligned_cols=233 Identities=21% Similarity=0.379 Sum_probs=174.8
Q ss_pred CCCCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCC---------------CCCccCC-------CC--CCCCCEEE
Q 022096 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDD---------------DSSVEEP-------RS--RARPCELY 103 (302)
Q Consensus 48 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-------~~--~~~~~~l~ 103 (302)
..+..++|.++.+...|+...+..+.+.....+.....+ .+..+.+ .. ..+.-.|.
T Consensus 42 gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLI 121 (678)
T KOG0127|consen 42 GSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLI 121 (678)
T ss_pred CcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEE
Confidence 345689999999999998888887776644333221110 0000000 01 11245799
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccc
Q 022096 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183 (302)
Q Consensus 104 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~ 183 (302)
|+|||+.+.+.+|+.+|+.||.|.+|.|++.+.++.+ |||||+|....+|.+|++.+||..|+||+|.|.||.++....
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 9999999999999999999999999999987665555 999999999999999999999999999999999997654322
Q ss_pred cch-----------------h--h------------------c--cC--------------------C--C---C-----
Q 022096 184 RNA-----------------E--A------------------L--IS--------------------P--P---K----- 194 (302)
Q Consensus 184 ~~~-----------------~--~------------------~--~~--------------------~--~---~----- 194 (302)
... . . . .. . + .
T Consensus 201 ~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~ 280 (678)
T KOG0127|consen 201 DTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKA 280 (678)
T ss_pred ccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchh
Confidence 100 0 0 0 00 0 0 0
Q ss_pred --c--ccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh-----C
Q 022096 195 --K--IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL-----N 264 (302)
Q Consensus 195 --~--~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l-----~ 264 (302)
. ........+|||+|||+++++++|++.|++||.|..+.|+.++.|++++|.|||.|.+..+|+.|| .. .
T Consensus 281 q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~ 360 (678)
T KOG0127|consen 281 QNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASED 360 (678)
T ss_pred ccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCC
Confidence 0 000112378999999999999999999999999999999999999999999999999999999999 43 2
Q ss_pred C-ccccceeeeccccCCCceEEeeccccC
Q 022096 265 G-TVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 265 g-~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
| ..+. |+.|.|..|..+
T Consensus 361 g~~ll~-----------GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 361 GSVLLD-----------GRLLKVTLAVTR 378 (678)
T ss_pred ceEEEe-----------ccEEeeeeccch
Confidence 3 3333 888988887544
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=2.3e-29 Score=220.94 Aligned_cols=182 Identities=24% Similarity=0.399 Sum_probs=151.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc-CCceEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-GGREMRVR 174 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~l~v~ 174 (302)
...++.||||.||.++.|++|.-+|++.|+|-++++++|+.+|.+||||||+|.+.+.|++|++.||+++| .|+.|.|+
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999 69999998
Q ss_pred EcccCccc-------ccchhh----------------------------------------------ccCCC--------
Q 022096 175 FSIDMNSR-------TRNAEA----------------------------------------------LISPP-------- 193 (302)
Q Consensus 175 ~a~~~~~~-------~~~~~~----------------------------------------------~~~~~-------- 193 (302)
.+..+... ++.... .....
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 87643321 000000 00000
Q ss_pred --------Cccc---ccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-
Q 022096 194 --------KKIF---VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL- 261 (302)
Q Consensus 194 --------~~~~---~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al- 261 (302)
.... -...-..|||+||+.++|+|.|+++|++||.|++|..++| ||||.|.+.++|.+|+
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHH
Confidence 0000 0112267999999999999999999999999999999877 8999999999999999
Q ss_pred HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 262 SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 262 ~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
.+||+.+. |..|.|.+|++..+.+
T Consensus 312 ~~ngkeld-----------G~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 312 ETNGKELD-----------GSPIEVTLAKPVDKKK 335 (506)
T ss_pred HhcCceec-----------CceEEEEecCChhhhc
Confidence 99999999 8999999998766543
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=5.1e-30 Score=224.08 Aligned_cols=170 Identities=28% Similarity=0.492 Sum_probs=150.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-cCC--ceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGG--REMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~ 174 (302)
+.-++||+-||..++|.||+.+|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..||+.. |.| ..|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 34689999999999999999999999999999999999999999999999999999999999998876 444 678888
Q ss_pred EcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCH
Q 022096 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (302)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 254 (302)
++.....+- ...++|||+-|+..++|.+++++|++||.|++|+|.+|. .+.+||+|||.|.+.
T Consensus 113 ~Ad~E~er~----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehH
Confidence 875433221 113789999999999999999999999999999999996 799999999999999
Q ss_pred HHHHHHH-HhCCcc-ccceeeeccccCCCceEEeeccccCC
Q 022096 255 AERDAAL-SLNGTV-ESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 255 ~~A~~Al-~l~g~~-~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+-|..|+ .|||.. +.|+ +..|.|.||..+.
T Consensus 176 e~A~~Aika~ng~~tmeGc---------s~PLVVkFADtqk 207 (510)
T KOG0144|consen 176 EMAVAAIKALNGTQTMEGC---------SQPLVVKFADTQK 207 (510)
T ss_pred HHHHHHHHhhccceeeccC---------CCceEEEecccCC
Confidence 9999999 999987 4444 6789999997654
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.96 E-value=9e-30 Score=199.11 Aligned_cols=171 Identities=28% Similarity=0.440 Sum_probs=154.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..+|||+||+..++++.|.++|-+.|+|.++++++|+.+...+||||++|.++|+|+.|++.||...+-||+|+|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999998862
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDRKGQTTRVFGFISFSSDAER 257 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~A 257 (302)
..... ..+..|||+||.+.+++..|++.|+.||.+.. -.|+++..||.++|||||-|.+.+.+
T Consensus 89 ~~~nl----------------~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 89 HQKNL----------------DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccccc----------------cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 21111 12267999999999999999999999999655 58899999999999999999999999
Q ss_pred HHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 258 DAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 258 ~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
.+|+ .+||+.+. ++.+.|+|++.+..-+
T Consensus 153 d~ai~s~ngq~l~-----------nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 153 DAAIGSMNGQYLC-----------NRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHhccchhc-----------CCceEEEEEEecCCCc
Confidence 9999 99999999 8999999998877644
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=207.51 Aligned_cols=169 Identities=27% Similarity=0.454 Sum_probs=154.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
+.|.|.-||..+|+++|+.+|...|+|++|++++|+.+|++.||+||.|-++++|++|+..|||..+..++|+|.++.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred cccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~ 259 (302)
...-+ ...|||.+||..++..+|.++|++||.|.--+|+.|..+|.+||.|||+|....+|+.
T Consensus 122 s~~Ik-----------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 122 SDSIK-----------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEE 184 (360)
T ss_pred hhhhc-----------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHH
Confidence 43322 2679999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 260 AL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 260 Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
|+ .|||..=.+. .-.|.|+|+.....
T Consensus 185 AIk~lNG~~P~g~---------tepItVKFannPsq 211 (360)
T KOG0145|consen 185 AIKGLNGQKPSGC---------TEPITVKFANNPSQ 211 (360)
T ss_pred HHHhccCCCCCCC---------CCCeEEEecCCccc
Confidence 99 9999975532 45688888876644
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.6e-28 Score=231.58 Aligned_cols=182 Identities=18% Similarity=0.288 Sum_probs=146.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCcccccchhhc-------c----CCCCcccccCCCceEEEccCCCCC----------CHHHHHHhhccCCCeEEEEEEe
Q 022096 178 DMNSRTRNAEAL-------I----SPPKKIFVYESPHKLYVGNLSWAV----------KPEDLRNHFGRFGTVVSARVLH 236 (302)
Q Consensus 178 ~~~~~~~~~~~~-------~----~~~~~~~~~~~~~~l~v~nlp~~~----------~~~~L~~~f~~~G~i~~v~i~~ 236 (302)
............ . ..........+..+|+|.|+...- ..++|+++|++||.|..|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 443221111000 0 000001112345789999996421 2368999999999999999987
Q ss_pred cC---CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 237 DR---KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 237 ~~---~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
+. .++...|+|||+|.+.++|.+|+ .|||..|+ |+.|.|.|..
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~-----------gr~v~~~~~~ 500 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN-----------DRVVVAAFYG 500 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC-----------CeEEEEEEeC
Confidence 53 34667899999999999999999 99999999 7888887753
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=6.9e-28 Score=226.62 Aligned_cols=208 Identities=21% Similarity=0.272 Sum_probs=164.5
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCC-eeE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT-VLS 128 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~ 128 (302)
...++|+++.+...|++..+.+.+++........... ......++|||+|||.++++++|.+.|++++. +..
T Consensus 96 G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V-------~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~ 168 (578)
T TIGR01648 96 GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV-------CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVD 168 (578)
T ss_pred CCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc-------cccccCceeEeecCCcchhhHHHHHHhhcccCCceE
Confidence 4578999999999899999988888765432222111 11123489999999999999999999999864 444
Q ss_pred EEE-eeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceE
Q 022096 129 VEV-SRNPETGISRGCGYLTMGSINSAKNAIIALDGS--DVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKL 205 (302)
Q Consensus 129 v~i-~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 205 (302)
+.+ ......++++|||||+|.+.++|.+|++.|+.. .+.|+.|.|.|+......... ......+|
T Consensus 169 vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~------------~~~~~k~L 236 (578)
T TIGR01648 169 VIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED------------VMAKVKIL 236 (578)
T ss_pred EEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc------------ccccccEE
Confidence 433 333345789999999999999999999888643 478999999998754322111 01223789
Q ss_pred EEccCCCCCCHHHHHHhhccC--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCc
Q 022096 206 YVGNLSWAVKPEDLRNHFGRF--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNY 282 (302)
Q Consensus 206 ~v~nlp~~~~~~~L~~~f~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~ 282 (302)
||+||++++++++|+++|++| |.|.+|.+++ |||||+|.+.++|.+|+ .|||..|. |+
T Consensus 237 fVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~-----------Gr 297 (578)
T TIGR01648 237 YVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELE-----------GS 297 (578)
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEEC-----------CE
Confidence 999999999999999999999 9999998764 48999999999999999 89999999 89
Q ss_pred eEEeeccccCCCC
Q 022096 283 VLFVSFTYSKPSC 295 (302)
Q Consensus 283 ~l~v~~a~~k~~~ 295 (302)
.|.|+|+.++.+.
T Consensus 298 ~I~V~~Akp~~~~ 310 (578)
T TIGR01648 298 EIEVTLAKPVDKK 310 (578)
T ss_pred EEEEEEccCCCcc
Confidence 9999999876543
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.3e-27 Score=225.27 Aligned_cols=183 Identities=24% Similarity=0.334 Sum_probs=145.1
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+ .+|+++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 457999999998 6999999999999999999999986 3689999999999999999999999999999999998
Q ss_pred ccCcccccchh----------hc-cCC------C---CcccccCCCceEEEccCCCCCCHHHHHHhhccCCC--eEEEEE
Q 022096 177 IDMNSRTRNAE----------AL-ISP------P---KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARV 234 (302)
Q Consensus 177 ~~~~~~~~~~~----------~~-~~~------~---~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~--i~~v~i 234 (302)
........... .. ... + .......+..+|||+|||+++++++|+++|+.||. |..|++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 65422111000 00 000 0 00001234578999999999999999999999998 888988
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 235 ~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
.... ++ .+|+|||+|.+.++|.+|+ .|||+.+.++....| ..|+|+|++++
T Consensus 429 ~~~~-~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~-----~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKD-NE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAP-----YHLKVSFSTSR 480 (481)
T ss_pred ecCC-CC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCcc-----ceEEEEeccCC
Confidence 7654 33 5899999999999999999 999999994322222 46999998764
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.3e-28 Score=218.20 Aligned_cols=185 Identities=24% Similarity=0.368 Sum_probs=158.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
.||||++||++++.++|.++|+.+|+|..+.++.++.++.+|||+||+|.=.+++++|+..+++..|.||.|.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999766
Q ss_pred cccccchh---hccCCC------CcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEE
Q 022096 180 NSRTRNAE---ALISPP------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFIS 250 (302)
Q Consensus 180 ~~~~~~~~---~~~~~~------~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~ 250 (302)
........ .....+ ....-.....+|.|+||||.+.+.+|+.+|+.||.|.+|.|++..+++-+ |||||+
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEE
Confidence 54431110 000000 00111223578999999999999999999999999999999988765555 999999
Q ss_pred eCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 251 FSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 251 f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
|.+..+|..|| .+||..|. |+.+-|.||..|+.-.
T Consensus 165 fk~~~dA~~Al~~~N~~~i~-----------gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKID-----------GRPVAVDWAVDKDTYE 200 (678)
T ss_pred EeeHHHHHHHHHhccCceec-----------CceeEEeeeccccccc
Confidence 99999999999 99999999 8999999999887644
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=1.6e-27 Score=227.07 Aligned_cols=179 Identities=19% Similarity=0.329 Sum_probs=141.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCC------------CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPF------------GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (302)
....++|||||||+.+|+++|+++|.++ +.|..+.+ +..+|||||+|.+.++|.+|| .|+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCC
Confidence 3446899999999999999999999875 23444444 346789999999999999999 7999
Q ss_pred CCcCCceEEEEEcccCcccccchhhcc--------C----CCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEE
Q 022096 164 SDVGGREMRVRFSIDMNSRTRNAEALI--------S----PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS 231 (302)
Q Consensus 164 ~~~~g~~l~v~~a~~~~~~~~~~~~~~--------~----~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~ 231 (302)
..|.|+.|.|................. . ...........++|||+|||+.+++++|+++|+.||.|..
T Consensus 245 ~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~ 324 (509)
T TIGR01642 245 IIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKA 324 (509)
T ss_pred eEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE
Confidence 999999999976543321110000000 0 0000111244589999999999999999999999999999
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 232 ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 232 v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
+.|+++..+|.++|||||+|.+.++|..|+ .|||..++ |+.|.|.++...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~-----------~~~l~v~~a~~~ 375 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG-----------DNKLHVQRACVG 375 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC-----------CeEEEEEECccC
Confidence 999999999999999999999999999999 99999999 788888887543
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.3e-27 Score=223.17 Aligned_cols=163 Identities=25% Similarity=0.422 Sum_probs=139.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC-CceEEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~ 175 (302)
...++|||+|||++++|++|+++|++||.|.+|+|++| .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|..
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999999999999999999999999999999999 88999999999999999999999999999985 88888866
Q ss_pred cccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEE-ecCCCCCcceEEEEEeCC
Q 022096 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVL-HDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~-~~~~~g~~~G~afV~f~~ 253 (302)
+.. .++|||+|||+++++++|.+.|++++. +.++.+. .....++++|||||+|.+
T Consensus 135 S~~-----------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 135 SVD-----------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred ccc-----------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCC
Confidence 521 278999999999999999999999864 5555443 334567889999999999
Q ss_pred HHHHHHHH-HhCCc--cccceeeeccccCCCceEEeeccccCCC
Q 022096 254 DAERDAAL-SLNGT--VESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 254 ~~~A~~Al-~l~g~--~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
.++|.+|+ .|+.. .+. |+.|.|+|+.++..
T Consensus 192 ~edAa~AirkL~~gki~l~-----------Gr~I~VdwA~p~~~ 224 (578)
T TIGR01648 192 HRAAAMARRKLMPGRIQLW-----------GHVIAVDWAEPEEE 224 (578)
T ss_pred HHHHHHHHHHhhccceEec-----------CceEEEEeeccccc
Confidence 99999999 76543 344 78888988877654
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=3.3e-27 Score=222.45 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=130.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCCcCCceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL--DGSDVGGREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~a 176 (302)
+++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|++|++.+ ++..+.|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 489999999999999999999999999999999863 579999999999999999864 778899999999999
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
..+......... ..........+|+|+||++.+++++|+++|+.||.|.+|.|+++.. +|+|||+|.+.++
T Consensus 76 ~~~~~~~~~~~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~ 146 (481)
T TIGR01649 76 TSQEIKRDGNSD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNS 146 (481)
T ss_pred CCcccccCCCCc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHH
Confidence 754322111000 0000112235799999999999999999999999999999988643 4689999999999
Q ss_pred HHHHH-HhCCccccc
Q 022096 257 RDAAL-SLNGTVESH 270 (302)
Q Consensus 257 A~~Al-~l~g~~~~~ 270 (302)
|.+|+ .|||..+.+
T Consensus 147 A~~A~~~Lng~~i~~ 161 (481)
T TIGR01649 147 AQHAKAALNGADIYN 161 (481)
T ss_pred HHHHHHHhcCCcccC
Confidence 99999 999999864
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6e-26 Score=213.54 Aligned_cols=226 Identities=23% Similarity=0.335 Sum_probs=163.6
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCc----------cCCCCCCCCCEEEEcCCCCCCCHHHHHHh
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV----------EEPRSRARPCELYVCNLPRSFDISELLEM 119 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~v~nLp~~~t~~~l~~~ 119 (302)
...++|+||.+...+++..+. .+++....+.......... .........++|||+|||+.+++++|+++
T Consensus 128 ~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~ 206 (457)
T TIGR01622 128 RRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQI 206 (457)
T ss_pred CCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 346789996666665555554 4666554443222111000 00011122589999999999999999999
Q ss_pred hcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchh------------
Q 022096 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAE------------ 187 (302)
Q Consensus 120 f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~------------ 187 (302)
|++||.|..|.++++..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++...........
T Consensus 207 f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~ 286 (457)
T TIGR01622 207 FEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMG 286 (457)
T ss_pred HHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999653211100000
Q ss_pred -----------------hc----c-C-------------------C---C--------------Cccc---ccCCCceEE
Q 022096 188 -----------------AL----I-S-------------------P---P--------------KKIF---VYESPHKLY 206 (302)
Q Consensus 188 -----------------~~----~-~-------------------~---~--------------~~~~---~~~~~~~l~ 206 (302)
.. . . . + .... ......+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 366 (457)
T TIGR01622 287 KNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLV 366 (457)
T ss_pred cCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEE
Confidence 00 0 0 0 0 0000 113457889
Q ss_pred EccCCCCCC----------HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeec
Q 022096 207 VGNLSWAVK----------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQ 275 (302)
Q Consensus 207 v~nlp~~~~----------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~ 275 (302)
|.||....+ .++|++.|++||.|..|.|... ...|++||+|.+.++|.+|+ .|||+.|+
T Consensus 367 l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~------ 436 (457)
T TIGR01622 367 LSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFG------ 436 (457)
T ss_pred EecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccC------
Confidence 999954443 3689999999999999988643 35689999999999999999 99999999
Q ss_pred cccCCCceEEeecccc
Q 022096 276 PLFPFNYVLFVSFTYS 291 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~ 291 (302)
|+.|.+.|...
T Consensus 437 -----gr~i~~~~~~~ 447 (457)
T TIGR01622 437 -----GKMITAAFVVN 447 (457)
T ss_pred -----CeEEEEEEEcH
Confidence 78888888654
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.9e-26 Score=196.81 Aligned_cols=174 Identities=21% Similarity=0.397 Sum_probs=148.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
-++||||-|.+.+.|+.|+..|.+||+|.+|.+-+|+.|++++|||||+|+-+|.|..|++.+||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999985432
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
-......-.. . ..+...-++|||..+.++++++||+..|+.||.|.+|.+-+++.++.++||||++|.+.++-.
T Consensus 193 mpQAQpiID~-v-----qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQPIIDM-V-----QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred CcccchHHHH-H-----HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 2111100000 0 001112378999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
.|+ .||-..++ |+.|+|--.
T Consensus 267 eAiasMNlFDLG-----------GQyLRVGk~ 287 (544)
T KOG0124|consen 267 EAIASMNLFDLG-----------GQYLRVGKC 287 (544)
T ss_pred HHhhhcchhhcc-----------cceEecccc
Confidence 999 99988888 666666433
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=8.2e-26 Score=188.79 Aligned_cols=150 Identities=27% Similarity=0.501 Sum_probs=140.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|+-||+.|||..|+|..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999997 9999999999999999999999999999999998765
Q ss_pred cccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~ 259 (302)
.. ...+|+|+|+.+.++.++|+..|++||.|.++.|++| |+||.|...++|..
T Consensus 75 sk-------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~ 127 (346)
T KOG0109|consen 75 SK-------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVE 127 (346)
T ss_pred CC-------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHH
Confidence 32 2278999999999999999999999999999999988 79999999999999
Q ss_pred HH-HhCCccccceeeeccccCCCceEEeeccccCCCC
Q 022096 260 AL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 260 Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
|+ .|||+.|. |+.++|..+++.-+.
T Consensus 128 air~l~~~~~~-----------gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 128 AIRGLDNTEFQ-----------GKRMHVQLSTSRLRT 153 (346)
T ss_pred HHhcccccccc-----------cceeeeeeecccccc
Confidence 99 99999999 899999999887653
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8e-25 Score=191.65 Aligned_cols=238 Identities=22% Similarity=0.332 Sum_probs=186.2
Q ss_pred CCCCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCc--CCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCC
Q 022096 48 SRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEV--DDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGT 125 (302)
Q Consensus 48 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~ 125 (302)
+....++.+|+.+...+++.++...+.+.....+.-. ...-...+.++..+.++||||-|+..+||.+++++|++||.
T Consensus 71 ~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~ 150 (510)
T KOG0144|consen 71 STGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH 150 (510)
T ss_pred ccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCc
Confidence 4447789999999999998888888876664332211 11111112222245689999999999999999999999999
Q ss_pred eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-cCC--ceEEEEEcccCcccccchhh--------------
Q 022096 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGG--REMRVRFSIDMNSRTRNAEA-------------- 188 (302)
Q Consensus 126 v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g--~~l~v~~a~~~~~~~~~~~~-------------- 188 (302)
|++|+|++| ..+.+||||||.|.+.|.|..||+.|||.. +.| .+|.|+|+..++.+......
T Consensus 151 Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~ 229 (510)
T KOG0144|consen 151 IEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQ 229 (510)
T ss_pred cchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCC
Confidence 999999999 559999999999999999999999999976 666 57999999765543221100
Q ss_pred -cc---------------------------------------------------------------C-------------
Q 022096 189 -LI---------------------------------------------------------------S------------- 191 (302)
Q Consensus 189 -~~---------------------------------------------------------------~------------- 191 (302)
.. .
T Consensus 230 ~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~ 309 (510)
T KOG0144|consen 230 NPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQ 309 (510)
T ss_pred CccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCcccc
Confidence 00 0
Q ss_pred -CC-----------------------------------------------------------------------------
Q 022096 192 -PP----------------------------------------------------------------------------- 193 (302)
Q Consensus 192 -~~----------------------------------------------------------------------------- 193 (302)
.+
T Consensus 310 ~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~ 389 (510)
T KOG0144|consen 310 TSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQ 389 (510)
T ss_pred CCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhH
Confidence 00
Q ss_pred --------------------------CcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEE
Q 022096 194 --------------------------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247 (302)
Q Consensus 194 --------------------------~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~a 247 (302)
........+..|||++||.+.-+.+|...|..||.|.+.+++.|+.||-++.|+
T Consensus 390 ~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfg 469 (510)
T KOG0144|consen 390 YAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFG 469 (510)
T ss_pred hhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcC
Confidence 000001112669999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCCC
Q 022096 248 FISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 248 fV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~~ 297 (302)
||.|++..+|..|| .|||..++ +++|+|..+..+..+.+
T Consensus 470 fvSyen~~sa~~aI~amngfQig-----------~KrlkVQlk~~~~np~~ 509 (510)
T KOG0144|consen 470 FVSYENAQSAQNAISAMNGFQIG-----------SKRLKVQLKRDRNNPYP 509 (510)
T ss_pred cccccchhhhHHHHHHhcchhhc-----------cccceEEeeeccCCCCC
Confidence 99999999999999 99999999 89999999887766554
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=4.7e-24 Score=192.31 Aligned_cols=198 Identities=26% Similarity=0.371 Sum_probs=172.0
Q ss_pred CcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEE
Q 022096 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEV 131 (302)
Q Consensus 52 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i 131 (302)
..+|+|+.....+++..+.+..|.....+.......+..+. ..|||.||+.+++..+|.++|+.||+|.+|++
T Consensus 36 slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv 108 (369)
T KOG0123|consen 36 SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKV 108 (369)
T ss_pred ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEE
Confidence 88999999999999999999999888777776655444333 33999999999999999999999999999999
Q ss_pred eeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCC
Q 022096 132 SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211 (302)
Q Consensus 132 ~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 211 (302)
.++.. | ++|| ||+|.++++|++|++.+||..+.|+.|.|.....+..+...... .. ..-..+++.|++
T Consensus 109 ~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-~~--------~~~t~v~vk~~~ 176 (369)
T KOG0123|consen 109 ATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-YK--------KRFTNVYVKNLE 176 (369)
T ss_pred EEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc-hh--------hhhhhhheeccc
Confidence 99844 5 9999 99999999999999999999999999999998766554433222 11 122679999999
Q ss_pred CCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 212 ~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.+.+++.|..+|..+|.|..+.++.+. .|.++||+||.|.++++|..|+ .|||..+.
T Consensus 177 ~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 177 EDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred cccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 999999999999999999999999996 5679999999999999999999 99999998
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=200.04 Aligned_cols=174 Identities=27% Similarity=0.420 Sum_probs=147.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
++|||.||++++|.++|..+|...|.|..+.|.+.+.. -.+.|||||+|.+.++|++|++.|+|+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 44999999999999999999999999999999775432 135599999999999999999999999999999999999
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
..+...+-. .........+.|.|+|||+..+..+++++|..||.|.+|+|+.....+.+||||||+|-++.+
T Consensus 596 ~~k~~~~~g--------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~e 667 (725)
T KOG0110|consen 596 ENKPASTVG--------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPRE 667 (725)
T ss_pred cCccccccc--------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHH
Confidence 722211111 111112235789999999999999999999999999999999886667789999999999999
Q ss_pred HHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 257 RDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 257 A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
|.+|+ .|.++-+. |+.|.+.||...
T Consensus 668 a~nA~~al~STHly-----------GRrLVLEwA~~d 693 (725)
T KOG0110|consen 668 AKNAFDALGSTHLY-----------GRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHhhccccee-----------chhhheehhccc
Confidence 99999 99999888 899999998754
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=178.40 Aligned_cols=189 Identities=29% Similarity=0.457 Sum_probs=158.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc-CC--ceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-GG--REMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g--~~l~v~ 174 (302)
+.++||||-|...-.|+|++.+|..||.|++|.+.+.. .|.+||+|||.|.+..+|..||..|||..- .| -.|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 44899999999999999999999999999999999984 489999999999999999999999999774 44 678899
Q ss_pred EcccCcccccchhhc-----------------------------------------------------------------
Q 022096 175 FSIDMNSRTRNAEAL----------------------------------------------------------------- 189 (302)
Q Consensus 175 ~a~~~~~~~~~~~~~----------------------------------------------------------------- 189 (302)
++...+++...+...
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 986444321110000
Q ss_pred ---------cCCC-------------------------------------------------------------------
Q 022096 190 ---------ISPP------------------------------------------------------------------- 193 (302)
Q Consensus 190 ---------~~~~------------------------------------------------------------------- 193 (302)
..++
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0000
Q ss_pred --------------------CcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 194 --------------------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 194 --------------------~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
....+...++.|||..||.+..+.+|.+.|-.||.|.+.+|+.|+.|+.++.||||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 000112234899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCCCC
Q 022096 254 DAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 254 ~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~~~ 298 (302)
+.+|+.|| .|||..|+ =++|+|.++.+|+..+.|
T Consensus 337 p~SaQaAIqAMNGFQIG-----------MKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIG-----------MKRLKVQLKRPKDANRPY 371 (371)
T ss_pred chhHHHHHHHhcchhhh-----------hhhhhhhhcCccccCCCC
Confidence 99999999 99999999 689999999999988776
No 29
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=5.7e-23 Score=193.82 Aligned_cols=129 Identities=22% Similarity=0.363 Sum_probs=105.1
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCcc---------CCCCCCCCCEEEEcCCCCCCCHHHHHHhh
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------EPRSRARPCELYVCNLPRSFDISELLEMF 120 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~v~nLp~~~t~~~l~~~f 120 (302)
..+++|+|+.+...+++..+.+.+++....+........... ........++|||+|||+++++++|+++|
T Consensus 146 gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lF 225 (612)
T TIGR01645 146 GKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF 225 (612)
T ss_pred CCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHH
Confidence 457899998888888888888888776654443222111000 00112234799999999999999999999
Q ss_pred cCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 121 ~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
+.||.|.+|+|.+++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.++..
T Consensus 226 s~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 226 EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999998764
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2e-23 Score=188.28 Aligned_cols=150 Identities=25% Similarity=0.468 Sum_probs=137.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
..|||| +++|+..|.++|+++|+|.++++.+|. | +.|||||.|.++++|++|++.+|...+.|+.+++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999997 5 9999999999999999999999999999999999998643
Q ss_pred cccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~ 259 (302)
. ..|||.||+.+++..+|.++|+.||.|.+|++..+.+ | ++|| ||+|+++++|.+
T Consensus 76 ~----------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 76 P----------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKK 130 (369)
T ss_pred C----------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHH
Confidence 2 2299999999999999999999999999999999975 4 9999 999999999999
Q ss_pred HH-HhCCccccceeeeccccCCCceEEeecccc
Q 022096 260 AL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 260 Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
|+ .|||..+. ++.|.|.....
T Consensus 131 ai~~~ng~ll~-----------~kki~vg~~~~ 152 (369)
T KOG0123|consen 131 AIEKLNGMLLN-----------GKKIYVGLFER 152 (369)
T ss_pred HHHHhcCcccC-----------CCeeEEeeccc
Confidence 99 99999999 66666655443
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=2.7e-23 Score=181.34 Aligned_cols=160 Identities=24% Similarity=0.424 Sum_probs=142.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+.++|||++|+++++++.|++.|.+||+|.+|.+++|+.+++++||+||+|.+.+...+++ ....+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 4489999999999999999999999999999999999999999999999999999999999 667788999999999987
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A 257 (302)
+.......... ....+|||++||..+++++++++|++||.|..+.++.|..+.+.+||+||.|.+++.+
T Consensus 84 ~r~~~~~~~~~-----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 84 SREDQTKVGRH-----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred Ccccccccccc-----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 76544332211 1346899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcccc
Q 022096 258 DAALSLNGTVES 269 (302)
Q Consensus 258 ~~Al~l~g~~~~ 269 (302)
.+++...-..|.
T Consensus 153 dkv~~~~f~~~~ 164 (311)
T KOG4205|consen 153 DKVTLQKFHDFN 164 (311)
T ss_pred ceecccceeeec
Confidence 999966666666
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.2e-23 Score=171.07 Aligned_cols=141 Identities=26% Similarity=0.465 Sum_probs=121.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+++|||+||+..+||+-|..||++.|.|..++|+.+ .|+|.++.
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNWAT 49 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccccc
Confidence 4589999999999999999999999999999999986 34566654
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A 257 (302)
......+ ........+||+.|...++-++|++.|.+||+|.+++|++|..|++++|||||.|.+.++|
T Consensus 50 ~p~nQsk------------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dA 117 (321)
T KOG0148|consen 50 APGNQSK------------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDA 117 (321)
T ss_pred CcccCCC------------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHH
Confidence 3311100 0112246799999999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 258 DAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 258 ~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
+.|| .|||+.|+ +|.|+-+||+.|+...
T Consensus 118 EnAI~~MnGqWlG-----------~R~IRTNWATRKp~e~ 146 (321)
T KOG0148|consen 118 ENAIQQMNGQWLG-----------RRTIRTNWATRKPSEM 146 (321)
T ss_pred HHHHHHhCCeeec-----------cceeeccccccCcccc
Confidence 9999 99999999 8999999999998543
No 33
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.88 E-value=3.3e-23 Score=186.92 Aligned_cols=180 Identities=27% Similarity=0.395 Sum_probs=151.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
..+.++||+--|+...+..+|.++|+.+|.|..|+++.|+.+++++|.|||+|.+.++...|| .|.|..+.|-+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecc
Confidence 345689999999999999999999999999999999999999999999999999999999999 9999999999999988
Q ss_pred cccCcccccchhhccCCCCcccccCC-CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCH
Q 022096 176 SIDMNSRTRNAEALISPPKKIFVYES-PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (302)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 254 (302)
.......... ............ ...|||+||.+++++++|+.+|++||.|..|.+.+|.++|+++|||||+|.+.
T Consensus 255 sEaeknr~a~----~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 255 SEAEKNRAAN----ASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred cHHHHHHHHh----ccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecH
Confidence 6543222111 111011011111 23399999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCccccceeeeccccCCCceEEeecccc
Q 022096 255 AERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 255 ~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
++|.+|+ .|||..+. |+.|+|+.-+.
T Consensus 331 ~~ar~a~e~lngfelA-----------Gr~ikV~~v~~ 357 (549)
T KOG0147|consen 331 EDARKALEQLNGFELA-----------GRLIKVSVVTE 357 (549)
T ss_pred HHHHHHHHHhccceec-----------CceEEEEEeee
Confidence 9999999 99999998 56666655433
No 34
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.4e-20 Score=170.08 Aligned_cols=222 Identities=21% Similarity=0.305 Sum_probs=162.4
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCC------------CCCCCEEEEcCCCCCCCHHHHHH
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRS------------RARPCELYVCNLPRSFDISELLE 118 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~v~nLp~~~t~~~l~~ 118 (302)
...+.+| +++.|++.......+.|+-..+.......++.+.... ..+...||||||.+.+++++|+.
T Consensus 219 rskgi~Y-vef~D~~sVp~aiaLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ 297 (549)
T KOG0147|consen 219 RSKGIAY-VEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRG 297 (549)
T ss_pred hhcceeE-EEEecccchhhHhhhcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhh
Confidence 3556666 6777999888888999988887776654443333211 11223499999999999999999
Q ss_pred hhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccch------h--h--
Q 022096 119 MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA------E--A-- 188 (302)
Q Consensus 119 ~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~------~--~-- 188 (302)
+|++||.|+.|.+.+|.++|+++|||||+|.+.++|.+|+..|||.+|.||.|+|..-..+....... . .
T Consensus 298 ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~ 377 (549)
T KOG0147|consen 298 IFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQ 377 (549)
T ss_pred hccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcc
Confidence 99999999999999998899999999999999999999999999999999999998754322211000 0 0
Q ss_pred ----------------ccCCC-----------------------------Cccccc-------CCCceEEEccCCC--CC
Q 022096 189 ----------------LISPP-----------------------------KKIFVY-------ESPHKLYVGNLSW--AV 214 (302)
Q Consensus 189 ----------------~~~~~-----------------------------~~~~~~-------~~~~~l~v~nlp~--~~ 214 (302)
..... ...... .+..|+.+.|+=. ..
T Consensus 378 gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpste 457 (549)
T KOG0147|consen 378 GLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTE 457 (549)
T ss_pred ccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccc
Confidence 00000 000000 2335666777622 11
Q ss_pred C--------HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 215 K--------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 215 ~--------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
| .+|+.+-+.+||.|..|.|.++. -|+.||.|.+.+.|..|. .|||..|.++++++.+.
T Consensus 458 te~n~d~eI~edV~Eec~k~g~v~hi~vd~ns-----~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 458 TEPNWDQEIREDVIEECGKHGKVCHIFVDKNS-----AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred cCcchhhHHHHHHHHHHHhcCCeeEEEEccCC-----CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 1 36888999999999999885543 379999999999999999 99999999655555443
No 35
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.9e-19 Score=139.78 Aligned_cols=161 Identities=21% Similarity=0.295 Sum_probs=130.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||.++.+.+|.++|-+||.|..|.+-.. ...-.||||+|++..+|+.||..-+|..++|+.|+|+++..
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 489999999999999999999999999999988543 23567999999999999999999999999999999999865
Q ss_pred Ccccccchhhcc---------CCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEE
Q 022096 179 MNSRTRNAEALI---------SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249 (302)
Q Consensus 179 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV 249 (302)
............ ......+.-.+...|.|.+||.+-+++||++++.+-|.|....+.+|. .+.|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg-------~GvV 155 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG-------VGVV 155 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc-------ceee
Confidence 432211111000 000001122344789999999999999999999999999999998884 6999
Q ss_pred EeCCHHHHHHHH-HhCCcccc
Q 022096 250 SFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 250 ~f~~~~~A~~Al-~l~g~~~~ 269 (302)
+|-..++...|+ .|+.+.+.
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeeehhhHHHHHHhhcccccc
Confidence 999999999999 99988876
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.82 E-value=8.9e-19 Score=142.76 Aligned_cols=173 Identities=24% Similarity=0.385 Sum_probs=140.6
Q ss_pred CEEEEcCCCCCCCHHHHHH----hhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 100 CELYVCNLPRSFDISELLE----MFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~----~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
.||||.||+..+..++|+. +|++||.|..|...+. .+.||.|||.|.+.+.|..|+..|+|..+-|+.++|.|
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 5999999999999999887 9999999999988754 77999999999999999999999999999999999999
Q ss_pred cccCcccccchh-------------hcc---------C----------CCCc-ccccCCCceEEEccCCCCCCHHHHHHh
Q 022096 176 SIDMNSRTRNAE-------------ALI---------S----------PPKK-IFVYESPHKLYVGNLSWAVKPEDLRNH 222 (302)
Q Consensus 176 a~~~~~~~~~~~-------------~~~---------~----------~~~~-~~~~~~~~~l~v~nlp~~~~~~~L~~~ 222 (302)
|..+...-.+.. ... . ++.. .....+...+++.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 975443221100 000 0 0000 112345678999999999999999999
Q ss_pred hccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 223 f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
|++|...++|+++... .|.|||+|.+...|..|. .|.|..+.. ...++|.|+.
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~----------~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITK----------KNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceecc----------CceEEecccC
Confidence 9999999999998875 357999999999999999 999998873 5667777754
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=7.1e-19 Score=138.90 Aligned_cols=84 Identities=32% Similarity=0.515 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|.+|+|+.+..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6544
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=8.8e-18 Score=150.22 Aligned_cols=164 Identities=20% Similarity=0.250 Sum_probs=129.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
....|-+++|||++|++||.++|+.++ |+++.+.+ .+|+..|-|||+|.+++++++|+ +.+...+..|-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccC
Confidence 347899999999999999999999995 77765554 67999999999999999999999 678888999999998875
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEE-EEEEecCCCCCcceEEEEEeCCHHH
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
........ .+...........|.+++||+.|+++||.+||+..-.|.. |.++.++ .+++.|-|||+|++.+.
T Consensus 85 ~~e~d~~~------~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 85 GAEADWVM------RPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQES 157 (510)
T ss_pred Cccccccc------cCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHH
Confidence 44331111 1111111134478999999999999999999998866666 3455554 68899999999999999
Q ss_pred HHHHHHhCCcccccee
Q 022096 257 RDAALSLNGTVESHTV 272 (302)
Q Consensus 257 A~~Al~l~g~~~~~~~ 272 (302)
|++||.-|...|+++.
T Consensus 158 ae~Al~rhre~iGhRY 173 (510)
T KOG4211|consen 158 AEIALGRHRENIGHRY 173 (510)
T ss_pred HHHHHHHHHHhhccce
Confidence 9999977777777543
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=1.1e-17 Score=147.31 Aligned_cols=169 Identities=24% Similarity=0.363 Sum_probs=136.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhh-cCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 99 PCELYVCNLPRSFDISELLEMF-KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f-~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.|.+||.|||+++.+.+|+++| ++.|+|+.|.++.| ..|++||+|.|+|+++|.++||++.||.+.+.||.|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 3679999999999999999999 56899999999999 679999999999999999999999999999999999997543
Q ss_pred cCcccccch--------------------------------------hhccC----------------------------
Q 022096 178 DMNSRTRNA--------------------------------------EALIS---------------------------- 191 (302)
Q Consensus 178 ~~~~~~~~~--------------------------------------~~~~~---------------------------- 191 (302)
+........ .....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 211000000 00000
Q ss_pred --CCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccc
Q 022096 192 --PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVE 268 (302)
Q Consensus 192 --~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~ 268 (302)
.+.+........++||.||.+.+..+.|++.|.-.|.|+.|.+--|++ |.++|||.++|..+-+|..|+ .|++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 000111122337799999999999999999999999999999999974 699999999999999999999 8887554
Q ss_pred c
Q 022096 269 S 269 (302)
Q Consensus 269 ~ 269 (302)
.
T Consensus 282 ~ 282 (608)
T KOG4212|consen 282 F 282 (608)
T ss_pred c
Confidence 4
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=7.9e-18 Score=132.94 Aligned_cols=85 Identities=33% Similarity=0.627 Sum_probs=79.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.++.|+.|+.+++++|||||+|.+.++|++|+ .|||..|.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~--------- 102 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN--------- 102 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 34578999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|+|+++..+...
T Consensus 103 --Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 103 --GRHIRVNPANDRPSA 117 (144)
T ss_pred --CEEEEEEeCCcCCCC
Confidence 899999999877653
No 41
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.2e-17 Score=139.65 Aligned_cols=229 Identities=20% Similarity=0.364 Sum_probs=169.3
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCC-CccCC--------CCCCCCCEEEEcCCCCCCCHHHHHHhhc
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDS-SVEEP--------RSRARPCELYVCNLPRSFDISELLEMFK 121 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 121 (302)
+-++|+|+..-.+|.+.-+.+..|+....+........ +.... ++...-.+|||.-+.++.+|+||+..|+
T Consensus 153 kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFE 232 (544)
T KOG0124|consen 153 KHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE 232 (544)
T ss_pred cccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHH
Confidence 46799999999999999999999998776665443211 11111 1122357899999999999999999999
Q ss_pred CCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccch---------------
Q 022096 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNA--------------- 186 (302)
Q Consensus 122 ~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~--------------- 186 (302)
.||+|..|.+-+++..+.++||+||+|.+..+...|+..+|=+.++|+-|+|..+......--.+
T Consensus 233 AFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaA 312 (544)
T KOG0124|consen 233 AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAA 312 (544)
T ss_pred hhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998764322100000
Q ss_pred ---------hh---------------------c-------------------------cCCC------------------
Q 022096 187 ---------EA---------------------L-------------------------ISPP------------------ 193 (302)
Q Consensus 187 ---------~~---------------------~-------------------------~~~~------------------ 193 (302)
+. . ..++
T Consensus 313 AaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~p 392 (544)
T KOG0124|consen 313 AATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASP 392 (544)
T ss_pred HHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCC
Confidence 00 0 0000
Q ss_pred ---------------------------------------------CcccccCCCceEEEccC--CCCCCH---HHHHHhh
Q 022096 194 ---------------------------------------------KKIFVYESPHKLYVGNL--SWAVKP---EDLRNHF 223 (302)
Q Consensus 194 ---------------------------------------------~~~~~~~~~~~l~v~nl--p~~~~~---~~L~~~f 223 (302)
.+..+....+.+.++|+ |.++++ .+|.+.|
T Consensus 393 pT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EEC 472 (544)
T KOG0124|consen 393 PTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEEC 472 (544)
T ss_pred CchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHH
Confidence 00001122256788887 455554 6799999
Q ss_pred ccCCCeEEEEEEecCCCCCc----ceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 224 GRFGTVVSARVLHDRKGQTT----RVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 224 ~~~G~i~~v~i~~~~~~g~~----~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
.+||.|.+|.|...+.++.- ---.||+|....++.+|. .|||+.|+++.++.-.|.
T Consensus 473 gKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 473 GKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred hcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhh
Confidence 99999999999887755411 113699999999999999 999999997766665444
No 42
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=2.3e-17 Score=148.21 Aligned_cols=128 Identities=21% Similarity=0.310 Sum_probs=104.0
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++|+||.+...+++..+.+.+++....+......... ........++|||+|||+++|+++|+++|++||.|..|+
T Consensus 147 ~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~--p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~ 224 (346)
T TIGR01659 147 YSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKN 224 (346)
T ss_pred ccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc--ccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEE
Confidence 456899988777777888888888876655443332111 111223457899999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEcccCc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFSIDMN 180 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a~~~~ 180 (302)
|++++.+++++|||||+|.+.++|++||+.||+..+.| +.|.|.++....
T Consensus 225 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 225 ILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999999999999999999999999999866 689999887543
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=2.2e-16 Score=135.50 Aligned_cols=184 Identities=19% Similarity=0.249 Sum_probs=139.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLS--------VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (302)
..+.|||.|||.++|.+++.++|++||-|.+ |++.++. .|..+|=|.+.|-..++++.|++.|++..|.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3567999999999999999999999997763 7888884 499999999999999999999999999999999
Q ss_pred eEEEEEcccCcccccchh--------------h-----ccCCC--CcccccCCCceEEEccCC----CCCC-------HH
Q 022096 170 EMRVRFSIDMNSRTRNAE--------------A-----LISPP--KKIFVYESPHKLYVGNLS----WAVK-------PE 217 (302)
Q Consensus 170 ~l~v~~a~~~~~~~~~~~--------------~-----~~~~~--~~~~~~~~~~~l~v~nlp----~~~~-------~~ 217 (302)
.|+|+.|.-......... . ..-.+ .........++|.++|+= +..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999999863322111000 0 00011 122334456889999973 2223 36
Q ss_pred HHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEe
Q 022096 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFV 286 (302)
Q Consensus 218 ~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v 286 (302)
+|.+-+++||.|.+|.|.-.. +.|.+-|.|.+.++|..|+ .|+|+.|.++.+++.++.-.-.-++
T Consensus 292 dl~eec~K~G~v~~vvv~d~h----PdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~ 357 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRH----PDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQT 357 (382)
T ss_pred HHHHHHHHhCCcceEEEeccC----CCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeee
Confidence 778889999999999876443 3467999999999999999 9999999977666665554433333
No 44
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.70 E-value=6.5e-16 Score=134.78 Aligned_cols=163 Identities=30% Similarity=0.447 Sum_probs=126.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|.++|.+||.|..+.+..++.++.++|||||.|.+.++|..|++.++|..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999653
Q ss_pred -Ccccccch------hhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEe
Q 022096 179 -MNSRTRNA------EALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISF 251 (302)
Q Consensus 179 -~~~~~~~~------~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f 251 (302)
........ ..................+++.+++..++..++...|..+|.+..+.+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111111 00011112223345567899999999999999999999999997777776655444555555555
Q ss_pred CCHHHHHHHH
Q 022096 252 SSDAERDAAL 261 (302)
Q Consensus 252 ~~~~~A~~Al 261 (302)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 5544454444
No 45
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=146.47 Aligned_cols=179 Identities=25% Similarity=0.281 Sum_probs=138.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...+.|+|+|||..+..++|..+|..||.|.+|.++.. |. -++|.|.+..+|.+|+..|....+....+.+.|+
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 34488999999999999999999999999999966532 21 3899999999999999999999998888888877
Q ss_pred ccCccc-----ccc------h-----hhccCCC------Ccc-----------cccCCCceEEEccCCCCCCHHHHHHhh
Q 022096 177 IDMNSR-----TRN------A-----EALISPP------KKI-----------FVYESPHKLYVGNLSWAVKPEDLRNHF 223 (302)
Q Consensus 177 ~~~~~~-----~~~------~-----~~~~~~~------~~~-----------~~~~~~~~l~v~nlp~~~~~~~L~~~f 223 (302)
...... ... . ....... ... ......++|||.||+++.+.++|...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 432111 000 0 0000000 000 011122449999999999999999999
Q ss_pred ccCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 224 GRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 224 ~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
...|.|..+.|...++. -.+.|||||+|.++++|+.|+ .|+|+.+. |+.|.|+++..+
T Consensus 537 ~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld-----------GH~l~lk~S~~k 598 (725)
T KOG0110|consen 537 SKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD-----------GHKLELKISENK 598 (725)
T ss_pred HhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec-----------CceEEEEeccCc
Confidence 99999999999877533 235699999999999999999 99999999 899999998833
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=1.3e-16 Score=110.37 Aligned_cols=70 Identities=37% Similarity=0.682 Sum_probs=67.3
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 102 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
|||+|||.++++++|+++|++||.|..+.+..+ .++..+|||||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 7799999999999999999999999999999999885
No 47
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=123.49 Aligned_cols=166 Identities=17% Similarity=0.272 Sum_probs=124.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC---CceEEEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVS-RNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMRVRF 175 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~ 175 (302)
+||||.+||.++...+|..+|..|---+.+.+- .++.....+-+||++|.+...|..|++.|||..|+ +..|++++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 899999999999999999999998555555443 33344456679999999999999999999999994 89999999
Q ss_pred cccCcccccchhhccCCC------------Cc------------------------------------------------
Q 022096 176 SIDMNSRTRNAEALISPP------------KK------------------------------------------------ 195 (302)
Q Consensus 176 a~~~~~~~~~~~~~~~~~------------~~------------------------------------------------ 195 (302)
++...+..+........+ .+
T Consensus 115 AKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~ 194 (284)
T KOG1457|consen 115 AKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSAN 194 (284)
T ss_pred hhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCccc
Confidence 875443322211000000 00
Q ss_pred ---------ccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCC
Q 022096 196 ---------IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG 265 (302)
Q Consensus 196 ---------~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g 265 (302)
......+.+|||.||..++++++|+.+|+.|......+|... .| ...||++|++.+.|..|+ .|.|
T Consensus 195 a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 195 AHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred chhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhc
Confidence 000112267999999999999999999999987666655432 22 347999999999999999 9999
Q ss_pred cccc
Q 022096 266 TVES 269 (302)
Q Consensus 266 ~~~~ 269 (302)
..+.
T Consensus 271 ~~~s 274 (284)
T KOG1457|consen 271 NLLS 274 (284)
T ss_pred ceec
Confidence 9876
No 48
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.67 E-value=2.8e-15 Score=131.22 Aligned_cols=174 Identities=25% Similarity=0.297 Sum_probs=138.9
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 99 PCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 99 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
...|.|.||.. .+|.+.|..+|+-||+|.+|+|+.++. --|.|+|.+...|.-|++.|+|..|.|+.|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 47899999975 689999999999999999999998743 359999999999999999999999999999999998
Q ss_pred cCcccccchhhccC--------CC----------CcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCC
Q 022096 178 DMNSRTRNAEALIS--------PP----------KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK 239 (302)
Q Consensus 178 ~~~~~~~~~~~~~~--------~~----------~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~ 239 (302)
...-.......... .+ .-.....+..+|.+.|+|.++++++|+..|...|...+......
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~-- 449 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ-- 449 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--
Confidence 65543322211110 00 00012345578999999999999999999999987655544332
Q ss_pred CCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeecccc
Q 022096 240 GQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 240 ~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
+.+-+|++++.+.++|..|+ .+++..++. +..|+|+|+++
T Consensus 450 --kd~kmal~q~~sveeA~~ali~~hnh~lge----------n~hlRvSFSks 490 (492)
T KOG1190|consen 450 --KDRKMALPQLESVEEAIQALIDLHNHYLGE----------NHHLRVSFSKS 490 (492)
T ss_pred --CCcceeecccCChhHhhhhccccccccCCC----------CceEEEEeecc
Confidence 23448999999999999999 999999996 78999999875
No 49
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.4e-16 Score=130.34 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
-++||||||+|++..+.|+++|++||+|++..|+.|+.+|++||||||+|++.++|.+|+ .-.+-.|+||+..|.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc-~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC-KDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh-cCCCCcccccccccchhhh
Confidence 378999999999999999999999999999999999999999999999999999999999 4456778999999999865
No 50
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4e-16 Score=128.11 Aligned_cols=86 Identities=33% Similarity=0.536 Sum_probs=81.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
+.+.+..+|-|.||+.+++|++|+++|.+||.|.+|.+.+|+.||.+||||||.|.+.++|.+||+.|||+-++.-.|+|
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 44557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
+|+.++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999764
No 51
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=3.9e-16 Score=133.08 Aligned_cols=81 Identities=37% Similarity=0.523 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.-.++|+|.|||+...+.||+.+|.+||.|.+|.|+.+ + ..+||||||+|++.++|++|-++|||..+.||+|.|..+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN-E-RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN-E-RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec-c-CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 34588999999999999999999999999999999986 3 349999999999999999999999999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
..+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 765
No 52
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=3.3e-16 Score=129.06 Aligned_cols=155 Identities=23% Similarity=0.373 Sum_probs=123.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
..|||++||+.+.+.+|..+|..||.+..+.+.. ||+||+|.+..+|.-|+..||+..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4699999999999999999999999999998854 58999999999999999999999999888999988743
Q ss_pred cccccchhhccC---CCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 180 NSRTRNAEALIS---PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 180 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
............ ...........+.+.+.++...+.+.+|.+.|+++|.+..... .++++||+|...++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 222211000000 0011111234578999999999999999999999999865544 23479999999999
Q ss_pred HHHHH-HhCCccccc
Q 022096 257 RDAAL-SLNGTVESH 270 (302)
Q Consensus 257 A~~Al-~l~g~~~~~ 270 (302)
|.+|+ .|+|..+.+
T Consensus 146 a~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNG 160 (216)
T ss_pred hhhcchhccchhhcC
Confidence 99999 999999993
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.63 E-value=1.6e-15 Score=105.04 Aligned_cols=70 Identities=36% Similarity=0.659 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 102 LYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 102 l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
|||+|||+++++++|+++|+.||.|..+.+..++. +..+|+|||+|.+.++|.+|++.++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 99999999999999999999999999999999874
No 54
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.7e-16 Score=141.50 Aligned_cols=187 Identities=18% Similarity=0.284 Sum_probs=143.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
....+||+|||...++.+++++...||.+...+++.+..+|-++||||.+|.+......|+..|||..+.++.|.|..+.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCcccccchhh-----ccCCC--CcccccCCCceEEEccCC--CCC-CH-------HHHHHhhccCCCeEEEEEEec-C-
Q 022096 178 DMNSRTRNAEA-----LISPP--KKIFVYESPHKLYVGNLS--WAV-KP-------EDLRNHFGRFGTVVSARVLHD-R- 238 (302)
Q Consensus 178 ~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~l~v~nlp--~~~-~~-------~~L~~~f~~~G~i~~v~i~~~-~- 238 (302)
........... ...-+ .......+...|.+.|+- .++ ++ |+++.-+.+||.|..|.|.++ .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 54433222111 00001 112223334555666642 111 12 456677789999999999988 2
Q ss_pred -CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceE
Q 022096 239 -KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVL 284 (302)
Q Consensus 239 -~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l 284 (302)
...-..|-.||+|.+.+++++|+ .|+|+.|.+++++.-+|+..+..
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY~ 495 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKYH 495 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHhh
Confidence 22445678999999999999999 99999999777777766655543
No 55
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=8.6e-16 Score=129.49 Aligned_cols=85 Identities=22% Similarity=0.329 Sum_probs=79.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
..+-+||||+-|+++++|..|+..|+.||+|..|+|++|..||+++|||||+|.++.+...|++..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
-....
T Consensus 178 ERgRT 182 (335)
T KOG0113|consen 178 ERGRT 182 (335)
T ss_pred ccccc
Confidence 75443
No 56
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=132.29 Aligned_cols=190 Identities=17% Similarity=0.251 Sum_probs=135.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--cCCceEEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD--VGGREMRVRF 175 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~ 175 (302)
.++.|+++|||++++|++|.+++.+||.|..+.+.+.+. .||++|.+.++|..-+....... +.|+.|-|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 458999999999999999999999999999999987532 79999999999988664444433 5899999988
Q ss_pred cccCcccccchhh---------------c----cCC----CCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEE
Q 022096 176 SIDMNSRTRNAEA---------------L----ISP----PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232 (302)
Q Consensus 176 a~~~~~~~~~~~~---------------~----~~~----~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v 232 (302)
+....-....... . ... .........--.++|.|+-+.++-+-|+.+|++||.|.+|
T Consensus 101 sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKI 180 (492)
T KOG1190|consen 101 SNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKI 180 (492)
T ss_pred hhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEE
Confidence 7543322211100 0 000 0011111223457899999999999999999999999999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCCCC
Q 022096 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 233 ~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~~~ 298 (302)
.-+...++- -|+|+|.+.+.|+.|. .|+|+.|.+-++..++ .|++.-.+..++..+++|+|
T Consensus 181 iTF~Knn~F----QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI-d~Sklt~LnvKynndkSRDy 242 (492)
T KOG1190|consen 181 ITFTKNNGF----QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI-DFSKLTDLNVKYNNDKSRDY 242 (492)
T ss_pred EEEecccch----hhhhhccchhhHHHHHHhccCCcccCceeEEEe-ehhhcccceeeccccccccc
Confidence 776654332 3899999999999999 9999999865554442 23333444444555555555
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.61 E-value=3.6e-15 Score=102.97 Aligned_cols=65 Identities=35% Similarity=0.671 Sum_probs=62.3
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
|||+|||..+++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|.+|+ .|||..+++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 58999999999999999999999 899999994
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.1e-15 Score=123.86 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=77.3
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|.|.||+.++++++|.++|.+||.|.+|.|.+|++||.+||||||.|.+.++|++|| .|||.-+.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd---------- 257 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD---------- 257 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----------
Confidence 4478999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEeeccccC
Q 022096 280 FNYVLFVSFTYSK 292 (302)
Q Consensus 280 ~g~~l~v~~a~~k 292 (302)
+-.|.|.|++++
T Consensus 258 -~LILrvEwskP~ 269 (270)
T KOG0122|consen 258 -NLILRVEWSKPS 269 (270)
T ss_pred -eEEEEEEecCCC
Confidence 788999998875
No 59
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=5.2e-15 Score=125.14 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+.+++++|+++|+.||+|.+|.|+++.. .+|||||+|.+.++|+.|+ .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47999999999999999999999999999999998854 5799999999999999999 6999999999999999864
Q ss_pred C
Q 022096 179 M 179 (302)
Q Consensus 179 ~ 179 (302)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.2e-15 Score=111.80 Aligned_cols=83 Identities=18% Similarity=0.352 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+++|||+||++.++|++|.++|+++|+|..|-|-.|+.+..+-|||||+|.+.++|+.|++.++|..++.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 45899999999999999999999999999999998899999999999999999999999999999999999999999875
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
...
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 443
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.57 E-value=9.2e-15 Score=130.83 Aligned_cols=76 Identities=29% Similarity=0.440 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI--NSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..+||||||++.+++++|..+|+.||.|.+|.|++ ++| ||||||+|.+. .++.+||..|||..+.||.|+|..|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 37899999999999999999999999999999994 567 99999999987 7899999999999999999999998
Q ss_pred cc
Q 022096 177 ID 178 (302)
Q Consensus 177 ~~ 178 (302)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 64
No 62
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=7.6e-14 Score=126.04 Aligned_cols=180 Identities=18% Similarity=0.234 Sum_probs=131.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCC---CCCccc---EEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE---TGISRG---CGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g---~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
-.+.||||+||++++|++|...|..||.+. |..+.... --.++| |+|+.|+++.++..-+....- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 468999999999999999999999999865 44442111 113455 999999999988877755432 33333
Q ss_pred EEEEcccCcccccc-------hhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhc-cCCCeEEEEEEecCCCCCc
Q 022096 172 RVRFSIDMNSRTRN-------AEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFG-RFGTVVSARVLHDRKGQTT 243 (302)
Q Consensus 172 ~v~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~-~~G~i~~v~i~~~~~~g~~ 243 (302)
-+..+.+....+.. ....... ......++.+||||++||..++-++|..+|+ -||.|..+-|-.|++-+.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 33332221111100 0000000 0112235669999999999999999999998 8999999999999889999
Q ss_pred ceEEEEEeCCHHHHHHHH-----HhCCccccceeeeccccCCCc
Q 022096 244 RVFGFISFSSDAERDAAL-----SLNGTVESHTVAFQPLFPFNY 282 (302)
Q Consensus 244 ~G~afV~f~~~~~A~~Al-----~l~g~~~~~~~~~~~~~~~g~ 282 (302)
+|-|-|.|.+.+.-.+|| .|+...|..++.++|++..+.
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eDq 456 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMEDQ 456 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEeccccceeeeecceecccc
Confidence 999999999999888887 399999999999999886553
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=7.4e-15 Score=120.29 Aligned_cols=68 Identities=28% Similarity=0.563 Sum_probs=63.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~ 269 (302)
-++|||+||+|.+..+.|+++|++||.|.++.|+.|+.+|++||||||+|.|.+.|.+|+.=-+-.|+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piId 79 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIID 79 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccc
Confidence 37899999999999999999999999999999999999999999999999999999999955555566
No 64
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=7e-16 Score=121.23 Aligned_cols=83 Identities=24% Similarity=0.477 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
++.-|||||||+..||.||..+|++||+|.+|.+++|..||+++||||+-|++..+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
...
T Consensus 114 ~Yk 116 (219)
T KOG0126|consen 114 NYK 116 (219)
T ss_pred ccc
Confidence 443
No 65
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.56 E-value=5.1e-15 Score=118.69 Aligned_cols=85 Identities=28% Similarity=0.376 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
+......|.|-||.+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||.|....+|+.|++.|+|.+|+|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 33445789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 022096 175 FSIDM 179 (302)
Q Consensus 175 ~a~~~ 179 (302)
+|...
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 98643
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=3.2e-14 Score=98.43 Aligned_cols=65 Identities=38% Similarity=0.665 Sum_probs=60.0
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
|+|+|||+.+++++|+++|+.||.|..+.+..+++ +.++|+|||+|.+.++|.+|+ .++|..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999987 999999999999999999999 888899993
No 67
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.9e-14 Score=117.95 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+.+|||+||++.+|+++|+++|+.||+|.+|+|+++. ..+|+|||+|.++++|+.|+ .|+|..|.|+.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999984 45689999999999999999 899999999999999876
Q ss_pred cC
Q 022096 178 DM 179 (302)
Q Consensus 178 ~~ 179 (302)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 68
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.53 E-value=4.2e-14 Score=119.66 Aligned_cols=75 Identities=15% Similarity=0.270 Sum_probs=69.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
.++|||+|||+.+++++|+++|+.||.|.+|+|++++. ++|||||+|.++++|..|+.|||..|. |
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~-----------g 69 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIV-----------D 69 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeC-----------C
Confidence 37899999999999999999999999999999999864 578999999999999999999999999 7
Q ss_pred ceEEeeccc
Q 022096 282 YVLFVSFTY 290 (302)
Q Consensus 282 ~~l~v~~a~ 290 (302)
+.|.|..+.
T Consensus 70 r~V~Vt~a~ 78 (260)
T PLN03120 70 QSVTITPAE 78 (260)
T ss_pred ceEEEEecc
Confidence 888887765
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7e-14 Score=100.03 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...+.|||+|||+++|.+++.++|++||.|..|+|-..+ ..+|-|||.|++..+|.+|++.|+|..+.++.|.|.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345889999999999999999999999999999997654 46799999999999999999999999999999999998
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6543
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.2e-14 Score=105.70 Aligned_cols=89 Identities=25% Similarity=0.384 Sum_probs=81.9
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+||++.++||+|+++|+.+|.|..|.+--|+.+..+=|||||+|.+.++|..|+ -++|+.+.
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----------- 104 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----------- 104 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc-----------
Confidence 489999999999999999999999999999999999988999999999999999999999 99999999
Q ss_pred CceEEeeccccCCCCCCCCCC
Q 022096 281 NYVLFVSFTYSKPSCRTFGVG 301 (302)
Q Consensus 281 g~~l~v~~a~~k~~~~~~~~~ 301 (302)
.+.|.+.|..-=..-++||-|
T Consensus 105 dr~ir~D~D~GF~eGRQyGRG 125 (153)
T KOG0121|consen 105 DRPIRIDWDAGFVEGRQYGRG 125 (153)
T ss_pred ccceeeeccccchhhhhhcCC
Confidence 788999887766666777665
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=9.5e-13 Score=114.33 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=145.6
Q ss_pred CCCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 95 SRARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
....+..++|-+|.. .++-+.|..+|..||.|++|++++.+. |-|+|++.+....++|+..||+..+.|.+|.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 344568999999996 578899999999999999999998743 68999999999999999999999999999999
Q ss_pred EEcccCcccccch-----------------hhccCCC---CcccccCCCceEEEccCCCCCCHHHHHHhhccCCC-eEEE
Q 022096 174 RFSIDMNSRTRNA-----------------EALISPP---KKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSA 232 (302)
Q Consensus 174 ~~a~~~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v 232 (302)
.+++..--..-+. +.....+ .+.....+.+.|...|.|..+||+.|.++|...+. ..+|
T Consensus 358 ~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~sv 437 (494)
T KOG1456|consen 358 CVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSV 437 (494)
T ss_pred eeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceE
Confidence 9886432211110 0000000 11122345688999999999999999999987664 6778
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 233 ~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+|+..+ +-++. -+.++|++.++|..|| .+|...+.+ |.-.+...|++.|+++++
T Consensus 438 kvFp~k-serSs-sGllEfe~~s~Aveal~~~NH~pi~~-----p~gs~PfilKlcfsts~~ 492 (494)
T KOG1456|consen 438 KVFPLK-SERSS-SGLLEFENKSDAVEALMKLNHYPIEG-----PNGSFPFILKLCFSTSKH 492 (494)
T ss_pred Eeeccc-ccccc-cceeeeehHHHHHHHHHHhccccccC-----CCCCCCeeeeeeeccccc
Confidence 888776 33322 4799999999999999 999999983 556667889999998875
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=7.8e-14 Score=96.00 Aligned_cols=72 Identities=38% Similarity=0.694 Sum_probs=67.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 101 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
+|||+|||..+++++|+++|.+||.|..+.+..+. +.++|+|||+|.+.++|++|++.++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998875 7789999999999999999999999999999998873
No 73
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=7.2e-14 Score=109.42 Aligned_cols=78 Identities=31% Similarity=0.460 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+||+..+++.||...|..||.+..|.|-++ +.|||||+|++..+|+.|+..|+|..|.|..|.|+.+..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 489999999999999999999999999999999875 568999999999999999999999999999999999876
Q ss_pred Ccc
Q 022096 179 MNS 181 (302)
Q Consensus 179 ~~~ 181 (302)
...
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 543
No 74
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=3.4e-15 Score=117.43 Aligned_cols=76 Identities=21% Similarity=0.453 Sum_probs=72.6
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
.-|||+|||+.+|+.||..+|++||.|.+|.+++|+.||+++||||+.|++..+...|+ .|||..+. |
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~-----------g 104 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL-----------G 104 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec-----------c
Confidence 57999999999999999999999999999999999999999999999999999999999 99999999 8
Q ss_pred ceEEeecc
Q 022096 282 YVLFVSFT 289 (302)
Q Consensus 282 ~~l~v~~a 289 (302)
+.|+|..-
T Consensus 105 RtirVDHv 112 (219)
T KOG0126|consen 105 RTIRVDHV 112 (219)
T ss_pred eeEEeeec
Confidence 88888754
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.50 E-value=1.2e-13 Score=94.78 Aligned_cols=71 Identities=37% Similarity=0.648 Sum_probs=67.3
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 104 VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 104 v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
|+|||..+++++|+++|++||.|..+.+..++.++.++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999998873
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=3.3e-14 Score=114.06 Aligned_cols=81 Identities=30% Similarity=0.504 Sum_probs=75.6
Q ss_pred ccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 198 VYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 198 ~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
..+....|.|.||.+.++.++|+.+|++||.|-+|.|++|+-|+.++|||||.|.+..+|+.|+ .|||.++.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld------- 81 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD------- 81 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec-------
Confidence 3456688999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccCCCceEEeecc
Q 022096 277 LFPFNYVLFVSFT 289 (302)
Q Consensus 277 ~~~~g~~l~v~~a 289 (302)
|+.|.|.+|
T Consensus 82 ----gRelrVq~a 90 (256)
T KOG4207|consen 82 ----GRELRVQMA 90 (256)
T ss_pred ----cceeeehhh
Confidence 777777776
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=8.9e-14 Score=126.93 Aligned_cols=82 Identities=29% Similarity=0.547 Sum_probs=78.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
+.|||||+|+++++++|..+|+..|.|.+++++.|+++|+++||||++|.+.++|.+|++.|||.++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred cc
Q 022096 180 NS 181 (302)
Q Consensus 180 ~~ 181 (302)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 78
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.1e-13 Score=103.70 Aligned_cols=88 Identities=16% Similarity=0.357 Sum_probs=81.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
.....+-.|||.|+...+||++|.+.|..||+|.++.+-.|+.||-.+|||.|+|.+.+.|++|+..+||..|.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCcc
Q 022096 174 RFSIDMNS 181 (302)
Q Consensus 174 ~~a~~~~~ 181 (302)
.|+.-+.+
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99975544
No 79
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=2.8e-13 Score=120.11 Aligned_cols=126 Identities=20% Similarity=0.330 Sum_probs=97.6
Q ss_pred CCCCcceeEEEeeecchhhhhhhhhcCCCC--------CCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhh
Q 022096 49 RSHPAGFRSVLAVVDEEAVVVEDEINGKDN--------VGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120 (302)
Q Consensus 49 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f 120 (302)
....++|+|+..-....+..+...+..... ..+.+..... ++ ..-..-..|||+||+.++||+.|+++|
T Consensus 204 k~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~--de-d~ms~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 204 KTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEP--DE-DTMSKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred cccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCC--Ch-hhhhheeeeeeeccchhhhHHHHHHHH
Confidence 457889999888777777766665533322 1222211111 11 122234789999999999999999999
Q ss_pred cCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccc
Q 022096 121 KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRN 185 (302)
Q Consensus 121 ~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~ 185 (302)
++||.|++|+.++| ||||.|.+.++|-+|++.+||..|+|..|.|.+|++....+..
T Consensus 281 ~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 281 NEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred HhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 99999999999987 9999999999999999999999999999999999887665544
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=117.57 Aligned_cols=80 Identities=28% Similarity=0.560 Sum_probs=72.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
..+++|+|.|+|+...+.||+..|.+||.|.+|.|+.+. .-+||||||+|++.+||++|. +|||..+.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VE--------- 162 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVE--------- 162 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceee---------
Confidence 445899999999999999999999999999999999984 348999999999999999999 99999999
Q ss_pred CCCceEEeeccccC
Q 022096 279 PFNYVLFVSFTYSK 292 (302)
Q Consensus 279 ~~g~~l~v~~a~~k 292 (302)
||.|.|.-|+..
T Consensus 163 --GRkIEVn~ATar 174 (376)
T KOG0125|consen 163 --GRKIEVNNATAR 174 (376)
T ss_pred --ceEEEEeccchh
Confidence 788888877543
No 81
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=3.4e-14 Score=114.96 Aligned_cols=83 Identities=25% Similarity=0.407 Sum_probs=79.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++||||+|..+++|.-|...|-+||+|..|.++.|-+++++||||||+|.-.|+|..||..+|+.+|.||.|+|.++.+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred Ccc
Q 022096 179 MNS 181 (302)
Q Consensus 179 ~~~ 181 (302)
..-
T Consensus 90 ~ki 92 (298)
T KOG0111|consen 90 EKI 92 (298)
T ss_pred ccc
Confidence 543
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.5e-13 Score=112.28 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccc-eeeecc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH-TVAFQP 276 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~-~~~~~~ 276 (302)
...+|+|+||++.+++++|+++|+.||.|.+|+|++|. +.+|||||+|+++++|..|+.|||..|.+ .+.+.|
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 34799999999999999999999999999999999984 45589999999999999999999999984 333333
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.9e-13 Score=112.54 Aligned_cols=79 Identities=19% Similarity=0.449 Sum_probs=73.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
++-+||||.-|++++++..|+..|+.||.|+.|+|++|+.||+++|||||+|+++.+...|. ..+|..|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id--------- 169 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID--------- 169 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec---------
Confidence 55589999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEeecc
Q 022096 279 PFNYVLFVSFT 289 (302)
Q Consensus 279 ~~g~~l~v~~a 289 (302)
|+.|-|.+-
T Consensus 170 --grri~VDvE 178 (335)
T KOG0113|consen 170 --GRRILVDVE 178 (335)
T ss_pred --CcEEEEEec
Confidence 677777664
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=1e-12 Score=90.90 Aligned_cols=74 Identities=38% Similarity=0.688 Sum_probs=68.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 101 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987554 7799999999999999999999999999999998863
No 85
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.9e-13 Score=101.47 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=79.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
.....|||.++....++++|.+.|..||.|+++.+--|.-||..+|||+|+|++.++|+.|+ .|||..+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll--------- 140 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL--------- 140 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---------
Confidence 44578999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|+|.|+..+..+
T Consensus 141 --~q~v~VDw~Fv~gp~ 155 (170)
T KOG0130|consen 141 --GQNVSVDWCFVKGPE 155 (170)
T ss_pred --CCceeEEEEEecCCc
Confidence 899999998776653
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=9.4e-13 Score=90.52 Aligned_cols=64 Identities=36% Similarity=0.669 Sum_probs=60.6
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 204 ~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
+|+|+|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|.+|+ .++|..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 48999999999999999999999999999999886 778999999999999999999 99999988
No 87
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=3.8e-13 Score=106.07 Aligned_cols=132 Identities=21% Similarity=0.363 Sum_probs=105.9
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS- 128 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~- 128 (302)
....+|+++....+|++..+..-++.-...+....-...+ ........+.++||+||.++++|..|.+.|+.||.+..
T Consensus 48 ~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas-~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~ 126 (203)
T KOG0131|consen 48 QKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS-AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISP 126 (203)
T ss_pred ccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc-cccccccccccccccccCcchhHHHHHHHHHhccccccC
Confidence 3578999988888888887777777444444433322222 33334445589999999999999999999999998765
Q ss_pred EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCccc
Q 022096 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSR 182 (302)
Q Consensus 129 v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 182 (302)
-+++++..||.++|+|||.|.+.+.+.+|+..++|..+..+.++|.++..+...
T Consensus 127 P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 127 PKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred CcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCC
Confidence 478899999999999999999999999999999999999999999999765543
No 88
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5e-13 Score=104.73 Aligned_cols=77 Identities=25% Similarity=0.457 Sum_probs=71.3
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+||+..+++.+|..+|..||.|..|.|-+.+. |||||+|+++.+|+.|+ .|||+.|-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~c----------- 73 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDIC----------- 73 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCcccc-----------
Confidence 48899999999999999999999999999999988753 69999999999999999 99999999
Q ss_pred CceEEeeccccCCC
Q 022096 281 NYVLFVSFTYSKPS 294 (302)
Q Consensus 281 g~~l~v~~a~~k~~ 294 (302)
|..+.|.++.-..+
T Consensus 74 G~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 74 GSRIRVELSTGRPR 87 (195)
T ss_pred CceEEEEeecCCcc
Confidence 88999999877665
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=9.8e-12 Score=110.10 Aligned_cols=77 Identities=31% Similarity=0.358 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....+||.||.+.+..+.|++.|.--|.|+.|.+--|+. |.++|+|.++|.++-.|-.||..|++.-+..++..+..
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 356799999999999999999999999999999988866 79999999999999999999999998777777766665
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=89.65 Aligned_cols=63 Identities=37% Similarity=0.662 Sum_probs=60.2
Q ss_pred EccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 207 VGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 207 v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
|+|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|+ .|+|..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 5799999999999999999999999999999878999999999999999999999 99999988
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.41 E-value=6.2e-13 Score=119.26 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=68.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCH--HHHHHHH-HhCCccccceeeeccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD--AERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~--~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
...+|||+||++.+++++|...|+.||.|.+|.|++. +| ||||||+|.+. .++.+|+ .|||..+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWK-------- 76 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK-------- 76 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeec--------
Confidence 3478999999999999999999999999999999944 66 99999999987 6899999 99999999
Q ss_pred cCCCceEEeecccc
Q 022096 278 FPFNYVLFVSFTYS 291 (302)
Q Consensus 278 ~~~g~~l~v~~a~~ 291 (302)
|+.|+|.-|.+
T Consensus 77 ---GR~LKVNKAKP 87 (759)
T PLN03213 77 ---GGRLRLEKAKE 87 (759)
T ss_pred ---CceeEEeeccH
Confidence 89999988754
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-13 Score=110.90 Aligned_cols=82 Identities=26% Similarity=0.397 Sum_probs=77.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||++|-..+++.-|...|-+||.|.+|.++.|.+++++||||||+|.-.++|..|+ .||+..+.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---------- 78 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---------- 78 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----------
Confidence 3489999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEeeccccCC
Q 022096 280 FNYVLFVSFTYSKP 293 (302)
Q Consensus 280 ~g~~l~v~~a~~k~ 293 (302)
|++|.|+||.+..
T Consensus 79 -GrtirVN~AkP~k 91 (298)
T KOG0111|consen 79 -GRTIRVNLAKPEK 91 (298)
T ss_pred -ceeEEEeecCCcc
Confidence 8999999997643
No 93
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=1.9e-12 Score=92.69 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=68.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
+-.+.|||+|||+++|.++..++|.+||.|..|+|-..++ .+|-|||.|++..+|.+|+ .|+|..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~--------- 83 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVD--------- 83 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccC---------
Confidence 3447899999999999999999999999999999977665 5889999999999999999 99999999
Q ss_pred CCCceEEeecccc
Q 022096 279 PFNYVLFVSFTYS 291 (302)
Q Consensus 279 ~~g~~l~v~~a~~ 291 (302)
++.|.|-|-..
T Consensus 84 --~ryl~vlyyq~ 94 (124)
T KOG0114|consen 84 --NRYLVVLYYQP 94 (124)
T ss_pred --CceEEEEecCH
Confidence 67777766443
No 94
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.40 E-value=1e-11 Score=111.71 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=125.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLS-VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
....|-+++||+.||++||.++|+..-.|.. |.++.++ .+++.|-|||+|.+.+.|++|+ .-|...|..|-|.|-.+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeehh
Confidence 4578999999999999999999998865555 5566764 4789999999999999999999 56778888888888765
Q ss_pred ccCcccccc-------------------hh---------------h------------------------------ccCC
Q 022096 177 IDMNSRTRN-------------------AE---------------A------------------------------LISP 192 (302)
Q Consensus 177 ~~~~~~~~~-------------------~~---------------~------------------------------~~~~ 192 (302)
......... .. . ....
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 321110000 00 0 0000
Q ss_pred CC-----cc-------cccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 022096 193 PK-----KI-------FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260 (302)
Q Consensus 193 ~~-----~~-------~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A 260 (302)
+. .. ........++.++||+..++.+|..+|+..-.+ .|.|-... +|+..|-|+|+|.+.++|..|
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~A 337 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGA 337 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC-CCccCCcceeecccchhhHhh
Confidence 00 00 001112678999999999999999999977444 67776664 799999999999999999999
Q ss_pred HHhCCccccce
Q 022096 261 LSLNGTVESHT 271 (302)
Q Consensus 261 l~l~g~~~~~~ 271 (302)
+.-++..+.++
T Consensus 338 mskd~anm~hr 348 (510)
T KOG4211|consen 338 MGKDGANMGHR 348 (510)
T ss_pred hccCCcccCcc
Confidence 98777777743
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1e-12 Score=120.83 Aligned_cols=164 Identities=24% Similarity=0.425 Sum_probs=133.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC-----------C-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF-----------G-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
.+.++|+++|+.++++.+..+|..- | .+..+.+-. .+.+||++|.+.+.|..|+ .+++..+
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~at~~~-~~~~~~f 247 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEATEAM-ALDGIIF 247 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCchhhhh-cccchhh
Confidence 5789999999999999999988653 3 255555533 3459999999999999999 8999999
Q ss_pred CCceEEEEEcccCcccccchhhc------cCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCC
Q 022096 167 GGREMRVRFSIDMNSRTRNAEAL------ISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG 240 (302)
Q Consensus 167 ~g~~l~v~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~ 240 (302)
.|+.+++................ .............+.++|+|||..+++++++++...||.++...++.|..+
T Consensus 248 ~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~ 327 (500)
T KOG0120|consen 248 EGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT 327 (500)
T ss_pred CCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc
Confidence 99999987655443332222111 111222233455688999999999999999999999999999999999999
Q ss_pred CCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 241 QTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 241 g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
|.++||||.+|.++.....|+ .|||..++
T Consensus 328 g~skg~af~ey~dpsvtd~A~agLnGm~lg 357 (500)
T KOG0120|consen 328 GNSKGFAFCEYCDPSVTDQAIAGLNGMQLG 357 (500)
T ss_pred ccccceeeeeeeCCcchhhhhcccchhhhc
Confidence 999999999999999999999 99999999
No 96
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=1.4e-12 Score=119.06 Aligned_cols=81 Identities=27% Similarity=0.496 Sum_probs=77.4
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
+.+||+|+|+++++++|..+|+..|.|.+++++.|+++|+.+||||++|.+.++|..|+ .|||..++ |
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~-----------g 87 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN-----------G 87 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC-----------C
Confidence 78999999999999999999999999999999999999999999999999999999999 99999999 8
Q ss_pred ceEEeeccccCCC
Q 022096 282 YVLFVSFTYSKPS 294 (302)
Q Consensus 282 ~~l~v~~a~~k~~ 294 (302)
+.|+|.|+.....
T Consensus 88 r~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 88 RKLRVNYASNRKN 100 (435)
T ss_pred ceEEeecccccch
Confidence 9999999865443
No 97
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=7.4e-13 Score=115.33 Aligned_cols=167 Identities=17% Similarity=0.217 Sum_probs=119.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKPF----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
-.|-+++||+++++.|+.++|.+- |..+.|.+++. -+|+..|-|||.|..+++|+.|+ .-|...++-|-|.+-.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHHH
Confidence 467888999999999999999632 35667777775 45999999999999999999999 5566667666666544
Q ss_pred cccCcccccchhh----cc----------CCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCC-eEE--EEEEecC
Q 022096 176 SIDMNSRTRNAEA----LI----------SPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVS--ARVLHDR 238 (302)
Q Consensus 176 a~~~~~~~~~~~~----~~----------~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~--v~i~~~~ 238 (302)
+.......--... .. .+...........+|.+++||+..+.++|..||..|-. |.. |.+..+.
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 4321111000000 00 01111122234689999999999999999999988864 433 7777774
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 239 ~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.|+..|-|||+|.+.++|..|. .-+.+.+.
T Consensus 320 -qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk 350 (508)
T KOG1365|consen 320 -QGRPSGEAFIQMRNAERARAAAQKCHKKLMK 350 (508)
T ss_pred -CCCcChhhhhhhhhhHHHHHHHHHHHHhhcc
Confidence 6999999999999999999998 65555543
No 98
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.36 E-value=3.2e-11 Score=104.93 Aligned_cols=176 Identities=16% Similarity=0.179 Sum_probs=127.8
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCCcCCc
Q 022096 92 EPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL--DGSDVGGR 169 (302)
Q Consensus 92 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~ 169 (302)
.+.+...+-.|+|+||-..++|.||.+.++.||.|..|.++..+ ..|.|+|++.+.|+.|+..- +...+.|+
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCc
Confidence 33444556789999999999999999999999999998876542 37999999999999999543 33335788
Q ss_pred eEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEE
Q 022096 170 EMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFI 249 (302)
Q Consensus 170 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV 249 (302)
.--+.++..+.-.+...+.. .+ +.---+.|-|--+.+|-+-|+.++...|.|.+|.|++. +|. -|+|
T Consensus 98 ~Al~NyStsq~i~R~g~es~--~p------N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmV 164 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESA--TP------NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMV 164 (494)
T ss_pred hhhcccchhhhhccCCCCCC--CC------CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEE
Confidence 87777775443222221100 00 01122455666789999999999999999999988876 343 4999
Q ss_pred EeCCHHHHHHHH-HhCCcccc-ceeeeccccCCCceEEe
Q 022096 250 SFSSDAERDAAL-SLNGTVES-HTVAFQPLFPFNYVLFV 286 (302)
Q Consensus 250 ~f~~~~~A~~Al-~l~g~~~~-~~~~~~~~~~~g~~l~v 286 (302)
+|++.+.|++|. .|||..|. +.+..+..+...-+|.|
T Consensus 165 EFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV 203 (494)
T KOG1456|consen 165 EFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNV 203 (494)
T ss_pred eechhHHHHHHHhhcccccccccceeEEEEecCcceeee
Confidence 999999999999 99999988 54444444444444443
No 99
>smart00361 RRM_1 RNA recognition motif.
Probab=99.35 E-value=3e-12 Score=88.48 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=55.9
Q ss_pred HHHHHHhhc----CCCCeeEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 113 ISELLEMFK----PFGTVLSVE-VSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 113 ~~~l~~~f~----~~G~v~~v~-i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999996 7777666 899999999999999999999999999999999986
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.34 E-value=5.1e-12 Score=83.35 Aligned_cols=56 Identities=29% Similarity=0.663 Sum_probs=51.1
Q ss_pred HHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 116 LLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 116 l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
|.++|++||+|..+.+..+. +|+|||+|.+.++|.+|++.|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999998753 589999999999999999999999999999999986
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.34 E-value=1.2e-11 Score=85.33 Aligned_cols=73 Identities=38% Similarity=0.663 Sum_probs=66.5
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCc
Q 022096 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNY 282 (302)
Q Consensus 204 ~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~ 282 (302)
+|+|+|||..+++++|+++|+.||.|..+.+..++.+ ..+|+|||+|.+.++|..|+ .+++..+. |+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~-----------~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG-----------GR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC-----------Ce
Confidence 4899999999999999999999999999999988754 78999999999999999999 99999988 77
Q ss_pred eEEeec
Q 022096 283 VLFVSF 288 (302)
Q Consensus 283 ~l~v~~ 288 (302)
.+.|.+
T Consensus 69 ~~~v~~ 74 (74)
T cd00590 69 PLRVEF 74 (74)
T ss_pred EEEEeC
Confidence 777764
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=6.9e-12 Score=109.24 Aligned_cols=78 Identities=36% Similarity=0.594 Sum_probs=74.4
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+.+++++|.++|..||.|..+.+..++.+|+++|||||+|.+.++|..|+ .++|..|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----------- 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----------- 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC-----------
Confidence 589999999999999999999999999999999999889999999999999999999999 99999999
Q ss_pred CceEEeeccc
Q 022096 281 NYVLFVSFTY 290 (302)
Q Consensus 281 g~~l~v~~a~ 290 (302)
|+.|.|.++.
T Consensus 184 ~~~~~v~~~~ 193 (306)
T COG0724 184 GRPLRVQKAQ 193 (306)
T ss_pred CceeEeeccc
Confidence 8888888865
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.1e-11 Score=85.62 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=49.1
Q ss_pred HHHHHHhhc----cCCCeEEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 216 PEDLRNHFG----RFGTVVSAR-VLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 216 ~~~L~~~f~----~~G~i~~v~-i~~~~~~--g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
+++|+++|+ .||.|.+|. |..++.+ +.++|||||+|.+.++|.+|+ .|||+.+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~ 63 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD 63 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 578888888 999999995 7777666 999999999999999999999 99999999
No 104
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.29 E-value=1.2e-11 Score=81.50 Aligned_cols=55 Identities=31% Similarity=0.548 Sum_probs=49.7
Q ss_pred HHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 219 LRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 219 L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
|+++|++||.|.++.+..+. +|+|||+|.+.++|..|+ .|||..+. |+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~-----------g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFN-----------GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEET-----------TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEC-----------CcEEEEEEC
Confidence 68999999999999997764 578999999999999999 99999999 899999986
No 105
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.8e-12 Score=107.70 Aligned_cols=84 Identities=26% Similarity=0.421 Sum_probs=79.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
++...|||..|.+-++.++|.-+|+.||.|.+|.|++|..||.+..||||+|.+.+++++|.-.|++..|++|.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 6543
No 106
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=6.1e-13 Score=126.35 Aligned_cols=136 Identities=19% Similarity=0.277 Sum_probs=120.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..++||+||+..+.+.+|...|..+|.+..+++.-....++.+|+||++|..++++.+|+. ++...+.|+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK--------- 736 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK--------- 736 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh---------
Confidence 4679999999999999999999999998888877555778999999999999999999994 444444441
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
..++|.|+|+..|.+.|+.++..+|.+++++++..+ .|+++|.|+|.|.++.+|.
T Consensus 737 ------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 737 ------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADAS 791 (881)
T ss_pred ------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhh
Confidence 469999999999999999999999999999988886 6999999999999999999
Q ss_pred HHH-HhCCcccc
Q 022096 259 AAL-SLNGTVES 269 (302)
Q Consensus 259 ~Al-~l~g~~~~ 269 (302)
++. +.++..+.
T Consensus 792 ~~~~s~d~~~~r 803 (881)
T KOG0128|consen 792 RKVASVDVAGKR 803 (881)
T ss_pred hhcccchhhhhh
Confidence 999 88888877
No 107
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.23 E-value=1.7e-11 Score=103.48 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=82.3
Q ss_pred hhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEE
Q 022096 66 AVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGY 145 (302)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~af 145 (302)
+.++...+++-...+.....+.+... ....++|+|+||.+.++.++|+..|++||.|.+|.|++| |+|
T Consensus 49 aedairNLhgYtLhg~nInVeaSksK----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~f 116 (346)
T KOG0109|consen 49 AEDAIRNLHGYTLHGVNINVEASKSK----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAF 116 (346)
T ss_pred cHHHHhhcccceecceEEEEEecccc----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeE
Confidence 33444446665555554443322211 234588999999999999999999999999999999987 999
Q ss_pred EEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 146 LTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 146 v~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
|.|...++|..|++.|+|.+|+|+.++|+.+..+
T Consensus 117 vh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred EEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 9999999999999999999999999999998654
No 108
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=6.6e-11 Score=111.56 Aligned_cols=110 Identities=19% Similarity=0.429 Sum_probs=88.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.-++|||||+|+..++|.||..+|+.||+|.+|.++- ++|+|||.+.+..+|++|+..|++..+.++.|+|.|+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 3479999999999999999999999999999999976 5789999999999999999999999999999999999
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhc
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFG 224 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~ 224 (302)
..+..+. ....... ..+-|.-+||.--.++|..+++
T Consensus 493 ~g~G~ks-e~k~~wD-----------~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 493 VGKGPKS-EYKDYWD-----------VELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ccCCcch-hhhhhhh-----------cccCeeEeehHhcCHHHHHhhh
Confidence 8776554 1111110 2233444687665566777764
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=7.1e-11 Score=95.29 Aligned_cols=84 Identities=26% Similarity=0.354 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPF-GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
......++|+.+|.-+.+.+|..+|.+| |.|.++++-+++.||.++|||||+|.+.+.|.-|-+.||++.|.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445789999999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred EcccC
Q 022096 175 FSIDM 179 (302)
Q Consensus 175 ~a~~~ 179 (302)
+-.+.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87544
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.17 E-value=5e-11 Score=104.22 Aligned_cols=177 Identities=18% Similarity=0.262 Sum_probs=141.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~a 176 (302)
...+.|++++.+.+.+.++..++..+|.+....+........++|++++.|...+.+..|+ .+.+ ..+.++.+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCccc
Confidence 4588999999999999999999999998888888877788899999999999999999999 5555 4667777666555
Q ss_pred ccCcccccchhhccCCCCcccccCCCceE-EEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKL-YVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 255 (302)
........... .. .......++ +++++++.+++++|+.+|..+|.|..+++..+..++..+|||+|+|.+..
T Consensus 166 ~~~~~~~~n~~------~~-~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 166 TRRGLRPKNKL------SR-LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccccccccchh------cc-cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 44331111110 01 111222445 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 256 ERDAALSLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 256 ~A~~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
.+..++..++..+. ++.+.+.+....+
T Consensus 239 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 239 SKKLALNDQTRSIG-----------GRPLRLEEDEPRP 265 (285)
T ss_pred hHHHHhhcccCccc-----------CcccccccCCCCc
Confidence 99999933777787 7888888876553
No 111
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.2e-12 Score=101.99 Aligned_cols=135 Identities=24% Similarity=0.295 Sum_probs=117.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|+...++|+-|.++|-+-|+|..|.|..++. +..+ ||||.|.++-+..-|++.+||..+.++.+.|.+
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~---- 83 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL---- 83 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc----
Confidence 8999999999999999999999999999999988744 6666 999999999999999999999999999988754
Q ss_pred cccccchhhccCCCCcccccCCCceEEEcc----CCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGN----LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 255 (302)
+.++ |...++++.+...|+.-|.+..+++.++. .|+.+-++|+.+.-..
T Consensus 84 --------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 84 --------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLC 136 (267)
T ss_pred --------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhh
Confidence 4455 67788999999999999999999999986 4889999999998776
Q ss_pred HHHHHH-HhCCcc
Q 022096 256 ERDAAL-SLNGTV 267 (302)
Q Consensus 256 ~A~~Al-~l~g~~ 267 (302)
..-.++ ..++..
T Consensus 137 ~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 137 AVPFALDLYQGLE 149 (267)
T ss_pred cCcHHhhhhcccC
Confidence 666676 544444
No 112
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.17 E-value=1.5e-10 Score=105.65 Aligned_cols=87 Identities=22% Similarity=0.353 Sum_probs=80.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
......++|||.+|...+...+|+.+|++||+|...+|+.+..+...+.|+||++.+.++|.+||..||.+.|+||.|.|
T Consensus 400 grs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 400 GRSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred cccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 34556799999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred EEcccCc
Q 022096 174 RFSIDMN 180 (302)
Q Consensus 174 ~~a~~~~ 180 (302)
..++...
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9987543
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=4.7e-11 Score=99.66 Aligned_cols=87 Identities=30% Similarity=0.599 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
+.-+++++|||-.||.+..+.+|..+|-.||.|.+.++..|+.|+.+|.|+||.|.|+.+|+.||..+||..|+=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCc
Q 022096 174 RFSIDMN 180 (302)
Q Consensus 174 ~~a~~~~ 180 (302)
....+++
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8876554
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.14 E-value=1.4e-10 Score=101.72 Aligned_cols=153 Identities=20% Similarity=0.220 Sum_probs=108.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
...+|||++||.+++++++++.|.+||.|..+.++.|+.+.+++||+||+|.+++++.+++ ...-+.|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 3569999999999999999999999999999999999999999999999999999999999 778889999999999998
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEE-------EEEecCCCCCcceEEEEE
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA-------RVLHDRKGQTTRVFGFIS 250 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v-------~i~~~~~~g~~~G~afV~ 250 (302)
++............. ..-.|+....+.-.|..+|.-||.+..- -. +-. ...+.|.+|..
T Consensus 175 pk~~~~~~~~~~~~~------------~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~-~~~-~~~~~g~g~~~ 240 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTR------------GKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGR-RYG-PLFNGGSGYPE 240 (311)
T ss_pred chhhccccccccccc------------cccccccccccccccchhccccCcccccccccccccc-ccc-cccCCCccccc
Confidence 765544332111110 1111233333333444455444443200 00 000 01356789999
Q ss_pred eCCHHHHHHHH-HhCC
Q 022096 251 FSSDAERDAAL-SLNG 265 (302)
Q Consensus 251 f~~~~~A~~Al-~l~g 265 (302)
|.+......+. .+++
T Consensus 241 ~~~~~~~~~~~~~~~~ 256 (311)
T KOG4205|consen 241 FGNSGLGFGYGNKLNR 256 (311)
T ss_pred cCccccccccccccCC
Confidence 98777776666 6665
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=9.1e-11 Score=92.89 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=69.2
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||.++-+.+|.++|-+||.|..|.+...+ ..-+||||+|+++.+|+.|+ .-||..+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdyd---------- 71 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYD---------- 71 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccC----------
Confidence 34889999999999999999999999999999875442 23569999999999999999 99999999
Q ss_pred CCceEEeeccccC
Q 022096 280 FNYVLFVSFTYSK 292 (302)
Q Consensus 280 ~g~~l~v~~a~~k 292 (302)
|..|.|.|+..-
T Consensus 72 -g~rLRVEfprgg 83 (241)
T KOG0105|consen 72 -GCRLRVEFPRGG 83 (241)
T ss_pred -cceEEEEeccCC
Confidence 899999998654
No 116
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.13 E-value=4.7e-11 Score=99.02 Aligned_cols=160 Identities=16% Similarity=0.287 Sum_probs=124.2
Q ss_pred CEEEEcCCCCCCCHHH-H--HHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 100 CELYVCNLPRSFDISE-L--LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~-l--~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...+++|+-..+..+- | ...|+.+-.....+++++. .+.-++++|+.|.....-.++-..-++..+.-+.++....
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 5567777766665554 3 6777777767777777774 4778899999999988888887666777776666555433
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
...... .-..-.+...+||++.|.-+++++-|...|.+|-.....++++|+-||+++||+||.|.+..+
T Consensus 176 tswedP-----------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 176 TSWEDP-----------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred cccCCc-----------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 222111 111122445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HhCCccccce
Q 022096 257 RDAAL-SLNGTVESHT 271 (302)
Q Consensus 257 A~~Al-~l~g~~~~~~ 271 (302)
+..|+ .|||+.++.+
T Consensus 245 ~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSR 260 (290)
T ss_pred HHHHHHhhcccccccc
Confidence 99999 9999999943
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.12 E-value=2e-10 Score=92.64 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=72.2
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccC-CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRF-GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~-G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
.....-+++..+|.-+.+.+|..+|.++ |.|..+++.+++.||.++|||||+|++.+.|.-|- .||++.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~------- 118 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM------- 118 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh-------
Confidence 3445678999999999999999999998 67888999999999999999999999999999999 99999999
Q ss_pred ccCCCceEEeecccc
Q 022096 277 LFPFNYVLFVSFTYS 291 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~ 291 (302)
++.|+|.|--+
T Consensus 119 ----e~lL~c~vmpp 129 (214)
T KOG4208|consen 119 ----EHLLECHVMPP 129 (214)
T ss_pred ----hheeeeEEeCc
Confidence 67777766543
No 118
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.11 E-value=2.6e-10 Score=93.53 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=72.4
Q ss_pred ceEEEccCCCCCCHHHHHH----hhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 203 HKLYVGNLSWAVKPEDLRN----HFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~----~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
.+|||.||+..+..++|+. +|++||.|.+|...+ +.+.||-|||.|.+.+.|..|+ .|+|..|.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFy-------- 78 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFY-------- 78 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCccc--------
Confidence 4999999999999998888 999999999998765 4568899999999999999999 99999999
Q ss_pred cCCCceEEeeccccCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.+++.||.++...-
T Consensus 79 ---gK~mriqyA~s~sdii 94 (221)
T KOG4206|consen 79 ---GKPMRIQYAKSDSDII 94 (221)
T ss_pred ---CchhheecccCccchh
Confidence 8999999998887643
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.6e-10 Score=98.78 Aligned_cols=84 Identities=27% Similarity=0.453 Sum_probs=78.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
.+.+.|||=.|.+-+++++|.-+|+.||.|.+|.|++|..||.+--||||+|++.++.++|. +|++-.|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID--------- 307 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID--------- 307 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---------
Confidence 34588999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
.+.|+|.|+++-.+
T Consensus 308 --DrRIHVDFSQSVsk 321 (479)
T KOG0415|consen 308 --DRRIHVDFSQSVSK 321 (479)
T ss_pred --cceEEeehhhhhhh
Confidence 89999999877655
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.00 E-value=3.4e-09 Score=92.77 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=119.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.+...|-.++||+..++.+|..+|.-..-...-..+.....|+..|.+.|.|.+.|.-+-|+ +-+...+.+|.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeecc
Confidence 34467888999999999999999975532222222222344677789999999999999999 55777889999999877
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhcc---C-CCeEEEEEEecCCCCCcceEEEEEeC
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR---F-GTVVSARVLHDRKGQTTRVFGFISFS 252 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~---~-G~i~~v~i~~~~~~g~~~G~afV~f~ 252 (302)
....--.-. ................-.|.+++||+++++.|+.+||.+ . |....|.+++.+ +|+.+|-|||.|.
T Consensus 137 ~ge~f~~ia-gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa 214 (508)
T KOG1365|consen 137 TGEEFLKIA-GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFA 214 (508)
T ss_pred CchhheEec-CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEec
Confidence 543322111 111111111122233467899999999999999999952 2 245666666654 7999999999999
Q ss_pred CHHHHHHHHHhCCcccc
Q 022096 253 SDAERDAALSLNGTVES 269 (302)
Q Consensus 253 ~~~~A~~Al~l~g~~~~ 269 (302)
.+++|+.||.-|...++
T Consensus 215 ~ee~aq~aL~khrq~iG 231 (508)
T KOG1365|consen 215 CEEDAQFALRKHRQNIG 231 (508)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999955555555
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=4.9e-10 Score=107.40 Aligned_cols=164 Identities=18% Similarity=0.257 Sum_probs=134.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++||+|||+..+++.+|+..|..+|.|.+|.|-.-+ -+.-.-||||.|.+...+-+|...+.+..|....+++.+
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3457899999999999999999999999999999986542 244455999999999999999999999888655655555
Q ss_pred cccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 022096 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (302)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 255 (302)
...+ ....+.+++++|+.-+....|...|..||.|..|.+-... -||+|+|++..
T Consensus 448 G~~k-------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq------~yayi~yes~~ 502 (975)
T KOG0112|consen 448 GQPK-------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ------PYAYIQYESPP 502 (975)
T ss_pred cccc-------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC------cceeeecccCc
Confidence 4321 1233679999999999999999999999999998775543 28999999999
Q ss_pred HHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 256 ERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 256 ~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
.|+.|+ .|-|..+++ | .+.+.|.|+....+
T Consensus 503 ~aq~a~~~~rgap~G~-----P----~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGG-----P----PRRLRVDLASPPGA 533 (975)
T ss_pred cchhhHHHHhcCcCCC-----C----CcccccccccCCCC
Confidence 999999 999999994 2 67789998866544
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=1.2e-08 Score=74.18 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=69.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC----CceEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG----GREMRV 173 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~l~v 173 (302)
+||+|+|||...|.++|.+++.. .|...-+.++.|..++.+.|||||.|.+++.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999998865 367778899999999999999999999999999999999999984 456677
Q ss_pred EEccc
Q 022096 174 RFSID 178 (302)
Q Consensus 174 ~~a~~ 178 (302)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77643
No 123
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.87 E-value=4e-09 Score=89.40 Aligned_cols=85 Identities=20% Similarity=0.341 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
....+.+.+||+|+.+.+|.+++..+|+.||.|..+.|+.|+.+|.++||+||+|.+.+.+..+++ |+|..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 445567899999999999999999999999999999999999999999999999999999999995 9999999999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
.+..-.
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 887544
No 124
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=8.1e-09 Score=89.49 Aligned_cols=80 Identities=16% Similarity=0.368 Sum_probs=68.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCcCCceE
Q 022096 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREM 171 (302)
Q Consensus 93 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l 171 (302)
+.....-.+|||+||-..++|.+|+++|.+||+|+.|.++.. +|+|||+|.+.++|++|...+ +...|+|+.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 334444589999999999999999999999999999999874 459999999999999999765 4455699999
Q ss_pred EEEEccc
Q 022096 172 RVRFSID 178 (302)
Q Consensus 172 ~v~~a~~ 178 (302)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999876
No 125
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.85 E-value=5e-08 Score=91.44 Aligned_cols=171 Identities=14% Similarity=0.035 Sum_probs=124.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
..+.+.+-+.+.+++.++.|++++|... .|..+.|..++..+-..|.++|.|....++++|+ .-|...+-.|.+.+..
T Consensus 308 v~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P 385 (944)
T KOG4307|consen 308 VSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGP 385 (944)
T ss_pred cchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecC
Confidence 3455778889999999999999999654 3666666666665555889999999999999999 5577777888888876
Q ss_pred cccCcccccc------h--------------hhccCCCCc--ccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEE-E
Q 022096 176 SIDMNSRTRN------A--------------EALISPPKK--IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-A 232 (302)
Q Consensus 176 a~~~~~~~~~------~--------------~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~-v 232 (302)
.....-.... . ......+.. ........+|||..||..+++.++.++|...-.|++ |
T Consensus 386 ~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 386 PGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred CCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 5322111000 0 000000011 122344689999999999999999999988777777 6
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 233 ~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.|.+.+ +++-++.|||.|..++++.+|+ --+-..++
T Consensus 466 ~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 466 ELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred EeccCC-cccccchhhheeccccccchhhhcccccccC
Confidence 666665 7889999999999999999888 55555566
No 126
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.5e-08 Score=85.66 Aligned_cols=81 Identities=25% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..+|+|.|||+.++++||+++|..||.+..+-+-.+ ..|++.|.|=|.|...++|.+|++.++|..++|+.+++.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 378999999999999999999999999998888887 6699999999999999999999999999999999999988754
Q ss_pred Cc
Q 022096 179 MN 180 (302)
Q Consensus 179 ~~ 180 (302)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.77 E-value=2.6e-08 Score=86.42 Aligned_cols=78 Identities=27% Similarity=0.446 Sum_probs=68.4
Q ss_pred cccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH--HhCCccccceeee
Q 022096 197 FVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL--SLNGTVESHTVAF 274 (302)
Q Consensus 197 ~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al--~l~g~~~~~~~~~ 274 (302)
+....-.+|||+||-..+++.+|+++|.+||.|+.|++...+ |+|||+|.+.+.|+.|. .+|...+.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~----- 291 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN----- 291 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeec-----
Confidence 344555899999999999999999999999999999998764 48999999999999998 67766667
Q ss_pred ccccCCCceEEeecccc
Q 022096 275 QPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~ 291 (302)
|++|.|.|..+
T Consensus 292 ------G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 ------GFRLKIKWGRP 302 (377)
T ss_pred ------ceEEEEEeCCC
Confidence 89999999887
No 128
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=2e-08 Score=95.23 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=68.2
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
+||||++|+..+++.||..+|+.||.|.+|.++.. ||+|||.+...++|.+|+ +|.+..+. +
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~-----------~ 484 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVA-----------D 484 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhccccc-----------c
Confidence 88999999999999999999999999999988664 579999999999999999 99988888 7
Q ss_pred ceEEeeccccCC
Q 022096 282 YVLFVSFTYSKP 293 (302)
Q Consensus 282 ~~l~v~~a~~k~ 293 (302)
+.|++.|+..+.
T Consensus 485 k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 485 KTIKIAWAVGKG 496 (894)
T ss_pred eeeEEeeeccCC
Confidence 899999987664
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=1.4e-08 Score=93.10 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=104.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|+|-|||..+++++|..+|+.||+|..|+.-.. .+|..||+|.+..+|++|++.|++.++.|+.|......
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~ 148 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA 148 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 3489999999999999999999999999999766544 56899999999999999999999999999998832221
Q ss_pred cCcccccchh----hccCC-CCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeC
Q 022096 178 DMNSRTRNAE----ALISP-PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252 (302)
Q Consensus 178 ~~~~~~~~~~----~~~~~-~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 252 (302)
.......... ..... ....+..-....+++ .|++..+..-+...++-+|.+.. +-.... .---|++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-----~hq~~~~~~ 221 (549)
T KOG4660|consen 149 RRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLL-----NHQRFVEFA 221 (549)
T ss_pred cccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccch-----hhhhhhhhc
Confidence 1111110000 00000 000111111233333 38888888777777888887665 322111 113678888
Q ss_pred CHHHHHHHH-HhCCcccc
Q 022096 253 SDAERDAAL-SLNGTVES 269 (302)
Q Consensus 253 ~~~~A~~Al-~l~g~~~~ 269 (302)
+..++..++ .+ |..+.
T Consensus 222 ~~~s~a~~~~~~-G~~~s 238 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLIS 238 (549)
T ss_pred cccchhhcccCC-ceecC
Confidence 888885555 33 55555
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.74 E-value=9.3e-10 Score=97.37 Aligned_cols=150 Identities=23% Similarity=0.301 Sum_probs=119.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-cCCceEEEEEccc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGGREMRVRFSID 178 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~a~~ 178 (302)
..+|++||.+.++..+|..+|..--.-.+-.++. -.||+||.+.+...|.+|++.++|.. +.|+.+.|..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999997642111111221 24799999999999999999999966 7999999988876
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEE-ecCCCCCcceEEEEEeCCHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVL-HDRKGQTTRVFGFISFSSDAER 257 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~-~~~~~g~~~G~afV~f~~~~~A 257 (302)
+..+. +.+-|+|+|+..-++.|..+...||.++.+... .+.++- ..=|+|...+.+
T Consensus 76 kkqrs-------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQRS-------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQH 132 (584)
T ss_pred HHHHh-------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHH
Confidence 54322 458899999999999999999999999998654 344332 234789999999
Q ss_pred HHHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 258 DAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 258 ~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
..|+ +|+|..+. +..++++|-
T Consensus 133 ~~ai~kl~g~Q~e-----------n~~~k~~Yi 154 (584)
T KOG2193|consen 133 RQAIHKLNGPQLE-----------NQHLKVGYI 154 (584)
T ss_pred HHHHHhhcchHhh-----------hhhhhcccC
Confidence 9999 99999999 777888774
No 131
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.64 E-value=7.4e-08 Score=87.94 Aligned_cols=79 Identities=25% Similarity=0.395 Sum_probs=66.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..+|||+|||++++..+|+++|..||.|....|......++...||||+|.+.+.+..|++ -+-..++|++|.|+--..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 3569999999999999999999999999998886543334444899999999999999994 457778999999987654
No 132
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.63 E-value=6e-08 Score=82.23 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=72.8
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~ 280 (302)
....+||+|+.+.++.+++...|+.||.|..+.|..|+..|.++||+||+|.+.+.+..|+.|||..+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~----------- 168 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIP----------- 168 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccc-----------
Confidence 347899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecccc
Q 022096 281 NYVLFVSFTYS 291 (302)
Q Consensus 281 g~~l~v~~a~~ 291 (302)
++.+.|.+..-
T Consensus 169 ~~~i~vt~~r~ 179 (231)
T KOG4209|consen 169 GPAIEVTLKRT 179 (231)
T ss_pred cccceeeeeee
Confidence 66666666543
No 133
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.62 E-value=3.8e-08 Score=86.53 Aligned_cols=165 Identities=19% Similarity=0.129 Sum_probs=122.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..|.|.||.+.++.++++.+|+-.|+|.++.++.+... ......|||-|.+...+..|. .|.++.|-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 58999999999999999999999999999998764222 345568999999999999998 88889998998888766
Q ss_pred ccCcccccchhh---------------------------------ccCCCCccc------ccCCCceEEEccCCCCCCHH
Q 022096 177 IDMNSRTRNAEA---------------------------------LISPPKKIF------VYESPHKLYVGNLSWAVKPE 217 (302)
Q Consensus 177 ~~~~~~~~~~~~---------------------------------~~~~~~~~~------~~~~~~~l~v~nlp~~~~~~ 217 (302)
.........+-. ....+.-.. ..+...++++.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 432211110000 000000000 00112679999999999999
Q ss_pred HHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCcccc
Q 022096 218 DLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVES 269 (302)
Q Consensus 218 ~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~ 269 (302)
++-+.|..+|.|....+-... ..-+|.|+|....+...|+.++|+.+.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 999999999999888765443 234688999998889999999998876
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.62 E-value=1.2e-07 Score=80.21 Aligned_cols=67 Identities=27% Similarity=0.394 Sum_probs=63.2
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
..+|+|.|||+.++++||+++|..||.++.+-+.+++ .|++.|.|-|.|...++|.+|+ .+||..+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld 150 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALD 150 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccC
Confidence 3789999999999999999999999999999999996 7999999999999999999999 99997777
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.55 E-value=4.5e-07 Score=74.25 Aligned_cols=87 Identities=24% Similarity=0.313 Sum_probs=72.3
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD-RKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~-~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
-++|||.+||.++...+|+.+|..|-..+...+... +.....+-+|||.|.+.++|..|+ .|||..|+. .
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp--------E 105 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP--------E 105 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc--------c
Confidence 489999999999999999999999877666655543 333456679999999999999999 999999983 2
Q ss_pred CCceEEeeccccCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~ 296 (302)
.+..|++.+|+++.+..
T Consensus 106 ~~stLhiElAKSNtK~k 122 (284)
T KOG1457|consen 106 TGSTLHIELAKSNTKRK 122 (284)
T ss_pred cCceeEeeehhcCcccc
Confidence 27899999998877644
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.54 E-value=7.4e-08 Score=80.26 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
...+||.|.|..+++.+.|...|.+|-.-...++++|..||+++||+||.|.+..++.+|+..++|.-++.|.|+...+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 45789999999999999999999999888889999999999999999999999999999999999999999999887665
Q ss_pred cC
Q 022096 178 DM 179 (302)
Q Consensus 178 ~~ 179 (302)
.+
T Consensus 269 wk 270 (290)
T KOG0226|consen 269 WK 270 (290)
T ss_pred HH
Confidence 44
No 137
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.54 E-value=8.8e-07 Score=64.44 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=70.6
Q ss_pred ceEEEccCCCCCCHHHHHHhhcc--CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~--~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
++|.|+|+|-..+.++|.+++.. .|...-+.++.|-.++-+.|||||-|.+++.|.+-. .++|+.+.. ..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~-------~~ 74 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN-------FN 74 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc-------CC
Confidence 68999999999999999999854 356788899999888999999999999999999998 999999862 22
Q ss_pred CCceEEeeccccC
Q 022096 280 FNYVLFVSFTYSK 292 (302)
Q Consensus 280 ~g~~l~v~~a~~k 292 (302)
..|...|+||.-.
T Consensus 75 s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 75 SKKVCEISYARIQ 87 (97)
T ss_pred CCcEEEEehhHhh
Confidence 3788888888643
No 138
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.49 E-value=4.3e-07 Score=85.34 Aligned_cols=77 Identities=22% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLS-VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...|||.+||..+++.++.++|...-.|+. |.|-+. -+++.++.|||.|.+++++.+|...-+.+-+..|.|+|...
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 567999999999999999999988777776 666554 45778899999999999999998666777778888988764
No 139
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.49 E-value=5e-07 Score=83.16 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=72.7
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..+.|+|.+|...+-..+|+.+|++||.|.-..|+.+.-+--.+.|+||++.+.++|.+|| .||.+.+.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---------- 473 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---------- 473 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----------
Confidence 3478999999999999999999999999999999998766667999999999999999999 99999999
Q ss_pred CCceEEeeccccC
Q 022096 280 FNYVLFVSFTYSK 292 (302)
Q Consensus 280 ~g~~l~v~~a~~k 292 (302)
|++|.|.-+++.
T Consensus 474 -GrmISVEkaKNE 485 (940)
T KOG4661|consen 474 -GRMISVEKAKNE 485 (940)
T ss_pred -ceeeeeeecccC
Confidence 788888776554
No 140
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=4.5e-07 Score=85.43 Aligned_cols=83 Identities=30% Similarity=0.426 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP---ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~---~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
.+..++|||+||++.++++.|...|+.||+|..|+|+.-+ +..+.+-+|||.|-+..+|++|++.|+|..+.++.++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3446899999999999999999999999999999998642 2245667899999999999999999999999999999
Q ss_pred EEEccc
Q 022096 173 VRFSID 178 (302)
Q Consensus 173 v~~a~~ 178 (302)
+.|+..
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999843
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.41 E-value=7.5e-07 Score=61.86 Aligned_cols=68 Identities=37% Similarity=0.467 Sum_probs=47.9
Q ss_pred CEEEEcCCCCCCCHHH----HHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 100 CELYVCNLPRSFDISE----LLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~----l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
..|+|.|||.+.+... |+.++.-|| .|.+|. .|.|+|.|.+++.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 556666776 676651 2579999999999999999999999999999999
Q ss_pred Ecc
Q 022096 175 FSI 177 (302)
Q Consensus 175 ~a~ 177 (302)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.3e-07 Score=85.33 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
.+..+|+|-|||..+++++|..+|+.||.|+.|+.-+ ..+|..||+|.|..+|++|+ .|+++.|.+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 3458899999999999999999999999999976544 45689999999999999999 999999994
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=2.4e-07 Score=75.61 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=67.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
+..++|||.|+...++++.|.++|-+-|.|.+|.|..++ .+..+ ||||.|+++.+..-|+ .+||-.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~--------- 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLE--------- 75 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhc---------
Confidence 344899999999999999999999999999999998886 56666 9999999999999999 99999988
Q ss_pred CCCceEEeec
Q 022096 279 PFNYVLFVSF 288 (302)
Q Consensus 279 ~~g~~l~v~~ 288 (302)
++.+++.+
T Consensus 76 --~~e~q~~~ 83 (267)
T KOG4454|consen 76 --EDEEQRTL 83 (267)
T ss_pred --cchhhccc
Confidence 56666665
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.35 E-value=1.6e-06 Score=75.47 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=69.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccccee
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTV 272 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~ 272 (302)
...|||.|||.++|.+++.++|++||.|.. |.+.++. .|.-+|=|++.|.-.++...|+ .||+..+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r--- 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELR--- 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccccc---
Confidence 366999999999999999999999997653 7777885 4999999999999999999999 99999999
Q ss_pred eeccccCCCceEEeeccc
Q 022096 273 AFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~ 290 (302)
|+.|+|.-|.
T Consensus 210 --------g~~~rVerAk 219 (382)
T KOG1548|consen 210 --------GKKLRVERAK 219 (382)
T ss_pred --------CcEEEEehhh
Confidence 8899988774
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=1.1e-06 Score=80.49 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=65.7
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNY 282 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~ 282 (302)
..|||+|||.+++.++|.++|..||.|+...|....-.++...||||+|.+.+++..|+.-+-..++ ++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig-----------~~ 357 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIG-----------GR 357 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccC-----------Ce
Confidence 5599999999999999999999999999998887643444458999999999999999965555555 88
Q ss_pred eEEeecccc
Q 022096 283 VLFVSFTYS 291 (302)
Q Consensus 283 ~l~v~~a~~ 291 (302)
.|.|.-+..
T Consensus 358 kl~Veek~~ 366 (419)
T KOG0116|consen 358 KLNVEEKRP 366 (419)
T ss_pred eEEEEeccc
Confidence 888887655
No 146
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=3.5e-08 Score=94.59 Aligned_cols=165 Identities=17% Similarity=0.108 Sum_probs=126.0
Q ss_pred CCCCEEEEcCCCCCCCHH-HHHHhhcCCCCeeEEEEeeCCCCCCccc-EEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDIS-ELLEMFKPFGTVLSVEVSRNPETGISRG-CGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~-~l~~~f~~~G~v~~v~i~~~~~~~~~~g-~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
...+...+.|+.+..... ..+..|..+|.|+.|++..... ..+.+ ++++++....+++.|. .-.+..+.++.+.|.
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~-k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF-KAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVG 646 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc-cccccchhhhhhccccchhhcc-cccccccCCccccCC
Confidence 345778888998877666 5788889999999999987322 22233 7889999999999998 788888999999888
Q ss_pred EcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCH
Q 022096 175 FSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (302)
Q Consensus 175 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 254 (302)
.+......... .........-.++|+.||+..+.+++|...|..+|.+..+++.-..+.++.||+|||+|..+
T Consensus 647 ~ad~~~~~~~~-------kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~ 719 (881)
T KOG0128|consen 647 LADAEEKEENF-------KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKP 719 (881)
T ss_pred CCCchhhhhcc-------CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecC
Confidence 87654321110 00000011226799999999999999999999999999888876677899999999999999
Q ss_pred HHHHHHH-HhCCccccc
Q 022096 255 AERDAAL-SLNGTVESH 270 (302)
Q Consensus 255 ~~A~~Al-~l~g~~~~~ 270 (302)
+++.+|+ ..++..++.
T Consensus 720 ~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 720 EHAGAAVAFRDSCFFGK 736 (881)
T ss_pred Cchhhhhhhhhhhhhhh
Confidence 9999999 555555443
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=1.1e-06 Score=72.92 Aligned_cols=71 Identities=25% Similarity=0.528 Sum_probs=62.5
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
..+||++||+.+.+.+|..+|..||.+.+|.+.. ||+||+|.+..+|..|+ .|||+.|. +
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~-----------~ 62 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELC-----------G 62 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceec-----------c
Confidence 3689999999999999999999999999987643 48999999999999999 99999999 4
Q ss_pred ceEEeeccccC
Q 022096 282 YVLFVSFTYSK 292 (302)
Q Consensus 282 ~~l~v~~a~~k 292 (302)
-.+.|.|+..+
T Consensus 63 e~~vve~~r~~ 73 (216)
T KOG0106|consen 63 ERLVVEHARGK 73 (216)
T ss_pred eeeeeeccccc
Confidence 55778887753
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=1.2e-05 Score=55.93 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=46.2
Q ss_pred ceEEEccCCCCCCHHH----HHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 203 HKLYVGNLSWAVKPED----LRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~----L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
..|+|.|||...+... |++++..+|. |..|. . |-|+|.|.+.+.|.+|. .|+|..+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---~-------~tAilrF~~~~~A~RA~KRmegEdVf------- 65 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---G-------GTAILRFPNQEFAERAQKRMEGEDVF------- 65 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T-------T-EEEEESSHHHHHHHHHHHTT--SS-------
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---C-------CEEEEEeCCHHHHHHHHHhhcccccc-------
Confidence 4689999999888654 6667778875 66551 1 25999999999999999 99999999
Q ss_pred ccCCCceEEeeccccCCC
Q 022096 277 LFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~ 294 (302)
|..|.|+|......
T Consensus 66 ----G~kI~v~~~~~~r~ 79 (90)
T PF11608_consen 66 ----GNKISVSFSPKNRE 79 (90)
T ss_dssp ----SS--EEESS--S--
T ss_pred ----cceEEEEEcCCccc
Confidence 78899999754443
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.1e-05 Score=59.94 Aligned_cols=71 Identities=25% Similarity=0.439 Sum_probs=45.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-----CcCCceEEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS-----DVGGREMRVR 174 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~ 174 (302)
..|+|.|++..++.++|++.|++||.|..|.+.+... .|||.|.+.+.|++|++.+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 5689999999999999999999999999998876432 6999999999999999876433 4567666665
Q ss_pred Ec
Q 022096 175 FS 176 (302)
Q Consensus 175 ~a 176 (302)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.05 E-value=4.9e-06 Score=73.02 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=77.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVL--------SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
....-+|||-+||..+++++|.++|.++|.|. .|.|.++++|++.||-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 44457899999999999999999999999876 3778889999999999999999999999999999999999
Q ss_pred CceEEEEEcccCc
Q 022096 168 GREMRVRFSIDMN 180 (302)
Q Consensus 168 g~~l~v~~a~~~~ 180 (302)
|.+|+|..+..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887655
No 151
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.05 E-value=2e-06 Score=71.99 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=63.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCC--------CCcccE----EEEEeCCHHHHHHHHHHhCCCC
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET--------GISRGC----GYLTMGSINSAKNAIIALDGSD 165 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--------~~~~g~----afv~f~~~~~a~~a~~~l~~~~ 165 (302)
....||+++||+.++..-|+++|+.||.|-+|.+-....+ |.++++ |.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999999765444 334433 6799999999999999999999
Q ss_pred cCCce
Q 022096 166 VGGRE 170 (302)
Q Consensus 166 ~~g~~ 170 (302)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.05 E-value=8.2e-06 Score=71.62 Aligned_cols=81 Identities=27% Similarity=0.386 Sum_probs=73.9
Q ss_pred CCEEE-EcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 99 PCELY-VCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 99 ~~~l~-v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++| |+||++.+++++|+.+|..+|.|..+++..++.++.++|||||.|.....+.+++.. ....+.|+++.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 45566 999999999999999999999999999999999999999999999999999999966 7888999999998876
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
+..
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 543
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.04 E-value=9.3e-06 Score=76.82 Aligned_cols=79 Identities=32% Similarity=0.584 Sum_probs=67.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecC---CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeec
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR---KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~---~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~ 275 (302)
...+.|||+||+++++++.|...|..||.|..|+|+.-. +..+.+-+|||.|.+..+|++|+ .|+|..+.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~------ 245 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM------ 245 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee------
Confidence 345789999999999999999999999999999998764 22556679999999999999999 99999988
Q ss_pred cccCCCceEEeecc
Q 022096 276 PLFPFNYVLFVSFT 289 (302)
Q Consensus 276 ~~~~~g~~l~v~~a 289 (302)
+..+++-|.
T Consensus 246 -----~~e~K~gWg 254 (877)
T KOG0151|consen 246 -----EYEMKLGWG 254 (877)
T ss_pred -----eeeeeeccc
Confidence 566666665
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.2e-05 Score=59.82 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=35.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
..|+|.|++..++.++|++.|++||.|..|.+.+... -|+|.|.+.+.|+.|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHH
Confidence 4689999999999999999999999999998887653 4999999999999998
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.89 E-value=3e-05 Score=67.43 Aligned_cols=79 Identities=23% Similarity=0.422 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCCHHH----H--HHhhcCCCCeeEEEEeeCCCC-CCcccE--EEEEeCCHHHHHHHHHHhCCCCcCCc
Q 022096 99 PCELYVCNLPRSFDISE----L--LEMFKPFGTVLSVEVSRNPET-GISRGC--GYLTMGSINSAKNAIIALDGSDVGGR 169 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~----l--~~~f~~~G~v~~v~i~~~~~~-~~~~g~--afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (302)
..-+||-+||+.+..++ | .++|++||.|..|.|-+..-. ....+. .||+|.+.|+|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998876665 2 678999999998877543211 111122 49999999999999999999999999
Q ss_pred eEEEEEcc
Q 022096 170 EMRVRFSI 177 (302)
Q Consensus 170 ~l~v~~a~ 177 (302)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998864
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.86 E-value=9.8e-06 Score=70.63 Aligned_cols=77 Identities=22% Similarity=0.246 Sum_probs=69.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..+|||||-|++|++||.+.+...| .+.++++..++.+|++||||.|...+..+.++.++.|-..+|+|+.-.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 5689999999999999999998877 6888899999999999999999999999999999999999999988776544
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.85 E-value=1.8e-05 Score=69.50 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--------SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
....+|||-+||..+++.+|..+|.++|.|+ .|.|-++++|++.+|-|.|.|++...|+.|+ -++++.|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~- 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC- 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc-
Confidence 3347899999999999999999999999764 4777889999999999999999999999999 99999999
Q ss_pred eeeeccccCCCceEEeeccccCC
Q 022096 271 TVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+..|+|+++..+.
T Consensus 143 ----------gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 ----------GNTIKVSLAERRT 155 (351)
T ss_pred ----------CCCchhhhhhhcc
Confidence 7788888887665
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.79 E-value=5.9e-05 Score=65.61 Aligned_cols=80 Identities=18% Similarity=0.344 Sum_probs=62.3
Q ss_pred CCceEEEccCCCCCCHHH------HHHhhccCCCeEEEEEEecCCC-CCcceE--EEEEeCCHHHHHHHH-HhCCccccc
Q 022096 201 SPHKLYVGNLSWAVKPED------LRNHFGRFGTVVSARVLHDRKG-QTTRVF--GFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~------L~~~f~~~G~i~~v~i~~~~~~-g~~~G~--afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
..+-+||-+|++.+-.|+ =.++|.+||.|.+|.|-+.... +...+. .||.|.+.++|.+|+ ..||..+.
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 346789999999887766 3578999999999988665311 112222 499999999999999 99999999
Q ss_pred eeeeccccCCCceEEeecccc
Q 022096 271 TVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~~a~~ 291 (302)
|+.|+.+|-+-
T Consensus 192 ----------Gr~lkatYGTT 202 (480)
T COG5175 192 ----------GRVLKATYGTT 202 (480)
T ss_pred ----------CceEeeecCch
Confidence 78888887643
No 159
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=8.2e-05 Score=62.51 Aligned_cols=86 Identities=30% Similarity=0.383 Sum_probs=75.6
Q ss_pred HHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEE
Q 022096 153 SAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA 232 (302)
Q Consensus 153 ~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v 232 (302)
-|+.|-..|++....|+.|.|.++.. ..|+|.||..-++.+.|.+.|+.||.|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------AELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------ceEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 35556667899999999999999854 469999999999999999999999999998
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh
Q 022096 233 RVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263 (302)
Q Consensus 233 ~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l 263 (302)
.+..|. .++..|-++|+|...-.|.+|+ ..
T Consensus 62 v~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 62 VAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 888884 6888999999999999999998 54
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.71 E-value=0.00015 Score=53.10 Aligned_cols=67 Identities=22% Similarity=0.260 Sum_probs=46.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHhCCccccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR-VLHDR------KGQTTRVFGFISFSSDAERDAALSLNGTVESH 270 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~-i~~~~------~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~ 270 (302)
+-|.|.|.|.. ....+.+.|++||.|.+.. +.++. .......+..|+|.++.+|.+||.-||+.+++
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g 80 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSG 80 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETT
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcC
Confidence 56899999988 5578999999999987764 11110 00112238999999999999999999999985
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=8.4e-05 Score=68.83 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=57.3
Q ss_pred ceEEEccCCCCCC------HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 203 HKLYVGNLSWAVK------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 203 ~~l~v~nlp~~~~------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
..|+|.|+|---. ..-|.++|+++|+|..+.++.+.++| ++||.|++|.+..+|..|+ .|||+.+..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecc
Confidence 6789999984221 23578899999999999999997655 9999999999999999999 999999884
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=6.7e-05 Score=64.11 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=62.5
Q ss_pred eEEEccC--CCCCC---HHHHHHhhccCCCeEEEEEEecCCCCCcce-EEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 204 KLYVGNL--SWAVK---PEDLRNHFGRFGTVVSARVLHDRKGQTTRV-FGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 204 ~l~v~nl--p~~~~---~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G-~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
.|.++|+ +-.++ ++++++-+++||.|.+|.|+..+..-...- -.||+|..+++|.+|+ -|||++|+|+++.+.
T Consensus 283 vlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~ 362 (378)
T KOG1996|consen 283 VLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSAC 362 (378)
T ss_pred HHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehe
Confidence 3555554 23444 357899999999999999988753321111 3799999999999999 999999998887777
Q ss_pred ccCCCceEEeecc
Q 022096 277 LFPFNYVLFVSFT 289 (302)
Q Consensus 277 ~~~~g~~l~v~~a 289 (302)
++...+.-...+|
T Consensus 363 Fyn~ekfs~~ela 375 (378)
T KOG1996|consen 363 FYNLEKFSNLELA 375 (378)
T ss_pred eccHHhhhhhhhh
Confidence 7766655444443
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.57 E-value=0.00018 Score=46.40 Aligned_cols=52 Identities=19% Similarity=0.398 Sum_probs=41.9
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
+.|.|.|.+....+ .+..+|..||.|.++.+....+ +.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~~~------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPESTN------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCCCc------EEEEEECCHHHHHhhC
Confidence 46788888876664 5666888999999998873332 7999999999999986
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.00018 Score=46.37 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=42.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (302)
+.|-|.|.+.+..+.. ..+|..||+|..+.+... .-..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 6788999998777554 458889999999988632 238999999999999985
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.00018 Score=66.67 Aligned_cols=79 Identities=22% Similarity=0.323 Sum_probs=64.9
Q ss_pred CCEEEEcCCCCCC--CH----HHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC-CceE
Q 022096 99 PCELYVCNLPRSF--DI----SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREM 171 (302)
Q Consensus 99 ~~~l~v~nLp~~~--t~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l 171 (302)
...|+|-|+|--- .- .-|..+|+++|+|....++-+.. |..+||.|++|.+..+|+.|++.|||+.|+ .+++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3689999999532 22 34678999999999999998866 459999999999999999999999999984 6777
Q ss_pred EEEEccc
Q 022096 172 RVRFSID 178 (302)
Q Consensus 172 ~v~~a~~ 178 (302)
.|..-++
T Consensus 137 ~v~~f~d 143 (698)
T KOG2314|consen 137 FVRLFKD 143 (698)
T ss_pred Eeehhhh
Confidence 7766543
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.20 E-value=0.00016 Score=63.30 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=60.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCC--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccce
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHT 271 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~--i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~ 271 (302)
.++||+||-|-+|++||.+.+...|. +.+++++.++..|+++|||+|-..+.....+.+ .|--+.+.+.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 68999999999999999999988874 888889999999999999999999988888888 7777777753
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.18 E-value=0.0015 Score=47.83 Aligned_cols=75 Identities=25% Similarity=0.270 Sum_probs=50.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE-EeeCC------CCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE-
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVE-VSRNP------ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM- 171 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~-i~~~~------~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l- 171 (302)
+.|.|-|.|.. ....+.+.|++||.|.+.. +.++. ..........|+|.+..+|.+|| ..||..+.|..+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEEE
Confidence 67999999988 5577888999999998775 11100 00112347899999999999999 889999988654
Q ss_pred EEEEc
Q 022096 172 RVRFS 176 (302)
Q Consensus 172 ~v~~a 176 (302)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 46665
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.17 E-value=0.00073 Score=60.83 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=56.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeC---CCC--CCc--------ccEEEEEeCCHHHHHHHHHHhCC
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN---PET--GIS--------RGCGYLTMGSINSAKNAIIALDG 163 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~---~~~--~~~--------~g~afv~f~~~~~a~~a~~~l~~ 163 (302)
...++|.+.|||.+-.-+.|.++|+.+|.|..|+|..- +.+ +.. +-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35799999999999888999999999999999999764 222 222 44699999999999999977755
Q ss_pred CCc
Q 022096 164 SDV 166 (302)
Q Consensus 164 ~~~ 166 (302)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 443
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.001 Score=61.36 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=59.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~ 159 (302)
-...+|||||+||.-++.++|..+|. -||-|..+-|=.|++-+-++|-|=|+|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 34469999999999999999999998 69999999999998889999999999999999999995
No 170
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.08 E-value=0.00042 Score=62.30 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=53.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEec---CCCCC----------cceEEEEEeCCHHHHHHHH-Hh
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD---RKGQT----------TRVFGFISFSSDAERDAAL-SL 263 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~---~~~g~----------~~G~afV~f~~~~~A~~Al-~l 263 (302)
..++|.+.|||.+-.-+-|.++|..+|.|+.|+|+.- ++.++ .+-+|+|+|+..+.|.+|. .|
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 4589999999999999999999999999999999987 43322 2457999999999999999 55
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.08 E-value=0.00026 Score=59.54 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=58.7
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCC--------CCcc----eEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG--------QTTR----VFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~--------g~~~----G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
..||+.++|+.++...|+++|+.||.|-.|.+-+...+ |..+ --|+|+|.+...|..+. .|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 57999999999999999999999999999999876544 2222 24789999999998888 99999999
Q ss_pred ce
Q 022096 270 HT 271 (302)
Q Consensus 270 ~~ 271 (302)
++
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 64
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.99 E-value=0.0023 Score=49.83 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=45.6
Q ss_pred HHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCceEEeecccc
Q 022096 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 217 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
.+|.+.|..||.+.=||+.-+. -+|.|.+-+.|.+|+.|+|..++ |+.|+|..+.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~~--------mwVTF~dg~sALaals~dg~~v~-----------g~~l~i~LKtp 106 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGDT--------MWVTFRDGQSALAALSLDGIQVN-----------GRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETTC--------EEEEESSCHHHHHHHHGCCSEET-----------TEEEEEEE---
T ss_pred HHHHHHHHhCCceEEEEEeCCe--------EEEEECccHHHHHHHccCCcEEC-----------CEEEEEEeCCc
Confidence 3678888999998888777653 79999999999999999999999 88888888654
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.92 E-value=0.0027 Score=49.48 Aligned_cols=72 Identities=31% Similarity=0.430 Sum_probs=52.2
Q ss_pred CEEEEcCCCC------CCCH---HHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce
Q 022096 100 CELYVCNLPR------SFDI---SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (302)
Q Consensus 100 ~~l~v~nLp~------~~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (302)
.||.|.=+.. ...+ .+|.+.|..||++.-|+++.+ --+|+|.+-++|.+|+ .++|..+.|+.
T Consensus 28 aTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~ 98 (146)
T PF08952_consen 28 ATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRT 98 (146)
T ss_dssp -EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEE
T ss_pred ceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEE
Confidence 5677765541 2222 367888999999998888765 4799999999999999 89999999999
Q ss_pred EEEEEcccCc
Q 022096 171 MRVRFSIDMN 180 (302)
Q Consensus 171 l~v~~a~~~~ 180 (302)
|+|....+..
T Consensus 99 l~i~LKtpdW 108 (146)
T PF08952_consen 99 LKIRLKTPDW 108 (146)
T ss_dssp EEEEE-----
T ss_pred EEEEeCCccH
Confidence 9998876543
No 174
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.79 E-value=0.0067 Score=40.14 Aligned_cols=54 Identities=15% Similarity=0.344 Sum_probs=45.2
Q ss_pred CceEEEccCCCCCCHHHHHHhhccC---CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRF---GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~---G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l 263 (302)
+..|+|+|+. +++.++|+.+|..| .....|..+-|.. |=|.|.+.+.|.+|| .|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 3679999996 68889999999998 2356788888853 889999999999999 54
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.77 E-value=0.00064 Score=57.33 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=52.5
Q ss_pred HHHHHhhc-CCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 114 SELLEMFK-PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 114 ~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+++...|+ +||+|+++.|-.+ ..-.-.|-+||.|...++|++|++.|||.-+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 8999999977655 334577889999999999999999999999999999998874
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.73 E-value=0.0043 Score=53.34 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=51.8
Q ss_pred HHHHHhhcCCCCeeEEEEeeCCCCCCcc-cEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 114 SELLEMFKPFGTVLSVEVSRNPETGISR-GCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 114 ~~l~~~f~~~G~v~~v~i~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+++++-.++||.|.+|.|...+...... --.||+|...++|.+|+-.|||..|+||.++..+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5678889999999999887653322221 237999999999999999999999999999887764
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.53 E-value=0.021 Score=39.98 Aligned_cols=54 Identities=19% Similarity=0.482 Sum_probs=41.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (302)
...+|. .|..+...||.++|+.||.|. |..+.|. -|||...+.+.|..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 556665 999999999999999999876 6666652 69999999999999998775
No 178
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.53 E-value=0.0056 Score=60.12 Aligned_cols=80 Identities=21% Similarity=0.314 Sum_probs=68.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMR 172 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~ 172 (302)
.....+.+|+++|..++....|...|..||.|..|.+-.. .-||+|+|.+...++.|++.+.|..|+| +.+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3445688999999999999999999999999998776432 2399999999999999999999999964 7799
Q ss_pred EEEcccCc
Q 022096 173 VRFSIDMN 180 (302)
Q Consensus 173 v~~a~~~~ 180 (302)
|.++....
T Consensus 525 vdla~~~~ 532 (975)
T KOG0112|consen 525 VDLASPPG 532 (975)
T ss_pred cccccCCC
Confidence 99886543
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.50 E-value=0.0027 Score=59.51 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc---CCceEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKP-FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV---GGREMR 172 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~l~ 172 (302)
.....|+|.||-.-.|.-+|+.++.+ +|.|++..| |+ -+..|||.|.+.++|-.....|||..| +++.|.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 34678999999999999999999985 667777633 21 355799999999999999999999998 678899
Q ss_pred EEEcc
Q 022096 173 VRFSI 177 (302)
Q Consensus 173 v~~a~ 177 (302)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 98874
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.46 E-value=0.0012 Score=55.78 Aligned_cols=61 Identities=20% Similarity=0.336 Sum_probs=48.7
Q ss_pred HHHHHhhc-cCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 217 EDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 217 ~~L~~~f~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
+++...|+ +||.|+++.|..+- .-.-+|-++|.|...++|++|+ .|||..|. |+.|+..+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~-----------G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYN-----------GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCcccc-----------CCcceeeec
Confidence 34555555 89999999877764 3455788999999999999999 99999999 677776664
No 181
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.21 E-value=0.0056 Score=54.68 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=59.2
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHhCCccccceee
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAALSLNGTVESHTVA 273 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~ 273 (302)
..|.|.||.++++.++++.+|.-.|.|.++.+..+... ....-.|||.|.|...+..|-.|-++.|-++.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdral 81 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRAL 81 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeE
Confidence 47999999999999999999999999999999875322 344568999999999999999887777664443
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.14 E-value=0.0082 Score=49.01 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcC-CCCe---eEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCcC---C-
Q 022096 99 PCELYVCNLPRSFDISELLEMFKP-FGTV---LSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDVG---G- 168 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~-~G~v---~~v~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g- 168 (302)
...|.|++||+.+|++++.+.++. ++.. ..+.-...... .....-|||.|.+.+++....+.++|+.|. |
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 478999999999999999998887 7765 33331122111 122345999999999999999999998873 2
Q ss_pred -ceEEEEEccc
Q 022096 169 -REMRVRFSID 178 (302)
Q Consensus 169 -~~l~v~~a~~ 178 (302)
....|++|--
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 2345666643
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.13 E-value=0.033 Score=36.89 Aligned_cols=55 Identities=13% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC---CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF---GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~---G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (302)
...|+|+|+.. ++.+||+.+|..| .....|..+-|. -|=|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 36899999964 8889999999988 135578888774 4889999999999999654
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.10 E-value=0.031 Score=39.13 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=39.3
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~ 264 (302)
+..+|. .|..+...||.++|+.||.|. |..+.|. -|||...+.+.|..|+ .++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 445555 999999999999999999975 5555553 3999999999999998 664
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.02 E-value=0.097 Score=39.14 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=50.9
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
..+.+...|+-++.++|..+.+.+-. |..++|++|.. .++-.++++|.+.++|..-. ..||+.|+
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34455556666677778777776654 88999999853 46678999999999999998 99999988
No 186
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.78 E-value=0.0083 Score=56.36 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=62.2
Q ss_pred ccCCCceEEEccCCCCCCHHHHHHhhc-cCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeec
Q 022096 198 VYESPHKLYVGNLSWAVKPEDLRNHFG-RFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQ 275 (302)
Q Consensus 198 ~~~~~~~l~v~nlp~~~~~~~L~~~f~-~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~ 275 (302)
.....+.|+|.||-..+|.-+|+.++. ..|.|.+..|-+- +..|||.|.+.++|.... +|||-.+-
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP------ 507 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWP------ 507 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccC------
Confidence 445568899999999999999999998 5566776633222 236999999999999999 99999865
Q ss_pred cccCCCceEEeecccc
Q 022096 276 PLFPFNYVLFVSFTYS 291 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~ 291 (302)
...++.|.+.|...
T Consensus 508 --~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 508 --PSNPKHLIADFVRA 521 (718)
T ss_pred --CCCCceeEeeecch
Confidence 11278888888643
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.69 E-value=0.075 Score=41.09 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=56.9
Q ss_pred CCCCCEEEEcCCCCCCC----HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 96 RARPCELYVCNLPRSFD----ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
.++-.+|.|+=|...+. -..+...++.||+|.+|.+.-. ..|.|.|.+..+|-+|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34457898987766653 2345556788999999987532 3699999999999999977765 6788899
Q ss_pred EEEEccc
Q 022096 172 RVRFSID 178 (302)
Q Consensus 172 ~v~~a~~ 178 (302)
.+.|...
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9988653
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.67 E-value=0.0046 Score=54.35 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCCHHHH---HHhhcCCCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 99 PCELYVCNLPRSFDISEL---LEMFKPFGTVLSVEVSRNPE----TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l---~~~f~~~G~v~~v~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
..-+||-+|+.....+++ .+.|.+||.|..|.+-++.- .+..- -++|+|...++|..||...+|..++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 356889999987655544 35789999999998877652 12222 28999999999999999999999999998
Q ss_pred EEEEccc
Q 022096 172 RVRFSID 178 (302)
Q Consensus 172 ~v~~a~~ 178 (302)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 8777643
No 189
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.66 E-value=0.00054 Score=61.51 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=99.2
Q ss_pred ccCccCCCCCCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhh
Q 022096 41 PKLSSCWSRSHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMF 120 (302)
Q Consensus 41 p~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f 120 (302)
.+.+.+...--+.+|++++...+..+..+.+.++++.+..+...+.+-. .......+.+-|+|+|+...++.|..++
T Consensus 25 ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s---v~kkqrsrk~Qirnippql~wevld~Ll 101 (584)
T KOG2193|consen 25 AKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS---VPKKQRSRKIQIRNIPPQLQWEVLDSLL 101 (584)
T ss_pred ccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch---hhHHHHhhhhhHhcCCHHHHHHHHHHHH
Confidence 3455666666788999988887778888888888877666555443222 1223345779999999999999999999
Q ss_pred cCCCCeeEEEEee-CCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 121 KPFGTVLSVEVSR-NPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 121 ~~~G~v~~v~i~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+||.+++|..+. +.++- ..-|+|.+.+.+.-|+..|+|..+....++|.|-.
T Consensus 102 ~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 102 AQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 9999999987643 22221 23368899999999999999999999999998864
No 190
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.64 E-value=0.015 Score=49.18 Aligned_cols=76 Identities=24% Similarity=0.322 Sum_probs=63.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc----CCceEEEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV----GGREMRVRF 175 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~----~g~~l~v~~ 175 (302)
..|+|.||..-+..+.|..-|+.||+|+.-.++.| ..++..|-++|.|...-.|.+|...+...-| .++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 67999999999999999999999999998877777 5588888999999999999999987743322 466666654
Q ss_pred c
Q 022096 176 S 176 (302)
Q Consensus 176 a 176 (302)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 4
No 191
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.63 E-value=0.61 Score=40.55 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCC-------CCCcccEEEEEeCCHHHHHHHH----HHhCC--C
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE-------TGISRGCGYLTMGSINSAKNAI----IALDG--S 164 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~-------~~~~~g~afv~f~~~~~a~~a~----~~l~~--~ 164 (302)
..|.|.+.|+..+++--.+...|.+||+|++|.++.+.. .........+.|-+.+.+.-.+ +.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999999999999998751 1233346788999988776443 44443 3
Q ss_pred CcCCceEEEEEcccCccc-c--cchhhcc-----CC-CCcccccCCCceEEEccCCCCC-CHHHHHHhh---ccCC----
Q 022096 165 DVGGREMRVRFSIDMNSR-T--RNAEALI-----SP-PKKIFVYESPHKLYVGNLSWAV-KPEDLRNHF---GRFG---- 227 (302)
Q Consensus 165 ~~~g~~l~v~~a~~~~~~-~--~~~~~~~-----~~-~~~~~~~~~~~~l~v~nlp~~~-~~~~L~~~f---~~~G---- 227 (302)
.+....|.+.+..-+-.. . ....... .. ..........+.|.|.-- ..+ .++-+.+.+ ..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 356777887776421111 0 1100000 00 001122345577777643 344 333333332 2222
Q ss_pred CeEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHH---HhCCcccc
Q 022096 228 TVVSARVLHDRKG--QTTRVFGFISFSSDAERDAAL---SLNGTVES 269 (302)
Q Consensus 228 ~i~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~Al---~l~g~~~~ 269 (302)
.+++|.++.-.+. .-+.-||.+.|-+..-|...+ ..++...+
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~ 219 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLG 219 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccC
Confidence 3788888765322 334569999999999998888 45566655
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=0.039 Score=47.81 Aligned_cols=63 Identities=27% Similarity=0.228 Sum_probs=49.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCcccccee
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTV 272 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~ 272 (302)
.=|.|.+.|+.-. .-|..+|++||.|.+..... +|. |-+|.|.+..+|++||.-||+.|++.+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ngN---wMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NGN---WMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CCc---eEEEEecchhHHHHhhhhcCeeeccce
Confidence 5577888886544 46788999999987775542 232 899999999999999999999998644
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.12 E-value=0.36 Score=36.07 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=48.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
..+.+...|+.++-++|..+.+.+- .|..++|++|.. .++=.+.+.|.+.++|....+.+||..+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 4444445555566667776666654 577889998733 25556889999999999999999999984
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.95 E-value=0.049 Score=44.48 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=45.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhcc-CCCe---EEEEEEecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGR-FGTV---VSARVLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~-~G~i---~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
..+|.|++||+.++++++.+.++. ++.- ..+.-...... ...-.-|||.|.+.+++..-. .++|..|.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 468999999999999999998887 6654 33331122111 112345999999999988888 99998866
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.66 E-value=0.29 Score=44.96 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=57.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
.+.|.|-.+|..++--||..+...+- .|..+++++|.. .++=...|.|.+.++|....+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 68999999999999999999998765 689999999632 23335889999999999999999999984
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.52 E-value=0.022 Score=50.22 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=58.4
Q ss_pred ceEEEccCCCCCCHHHHH---HhhccCCCeEEEEEEecCC--C--CCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 203 HKLYVGNLSWAVKPEDLR---NHFGRFGTVVSARVLHDRK--G--QTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~---~~f~~~G~i~~v~i~~~~~--~--g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
+.+||-+|+..+.++.+- +.|.+||.|.+|.+.++.. . +-.- -++|.|...++|..|| ..+|..+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~d----- 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDD----- 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhh-----
Confidence 557888888777655443 4788999999999988752 1 1111 2799999999999999 99999988
Q ss_pred ccccCCCceEEeeccccC
Q 022096 275 QPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~k 292 (302)
|+.|+.+|...|
T Consensus 152 ------g~~lka~~gttk 163 (327)
T KOG2068|consen 152 ------GRALKASLGTTK 163 (327)
T ss_pred ------hhhhHHhhCCCc
Confidence 666666666554
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.50 E-value=0.02 Score=52.55 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=61.5
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSF-DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~-t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
+.+.+-+.-.|+.. +-++|..+|.+||+|..|.+-... -.|.|+|.+..+|-+|. ..++..|+||.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 34556666667665 568999999999999999885432 25899999999998888 78999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
.+-
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 763
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.26 E-value=0.13 Score=48.30 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=59.3
Q ss_pred CccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--C
Q 022096 89 SVEEPRSRARPCELYVCNLPRSFDISELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG--S 164 (302)
Q Consensus 89 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~ 164 (302)
..++-+...+.+.|.++-||..+-.++++.+|.. |-++.+|.+-.+. -=||+|++..+|+.|.+.|.. .
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk 237 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVK 237 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHH
Confidence 3334444555688999999999999999999965 6678888875542 269999999999999987754 3
Q ss_pred CcCCceEEE
Q 022096 165 DVGGREMRV 173 (302)
Q Consensus 165 ~~~g~~l~v 173 (302)
+|.|+.|..
T Consensus 238 ~fqgKpImA 246 (684)
T KOG2591|consen 238 TFQGKPIMA 246 (684)
T ss_pred hhcCcchhh
Confidence 466766544
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.09 E-value=0.11 Score=37.01 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=46.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCCC--cCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHH
Q 022096 144 GYLTMGSINSAKNAIIALDGSD--VGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRN 221 (302)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~ 221 (302)
|.|+|.+.+-|++.++ ...+. ++++.+.|....-.........- ......++|.|.|||...++++|++
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv--------~~~vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQV--------FSGVSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEE--------EEcccCCEEEEeCCCCCCChhhhee
Confidence 6899999999999994 33333 46667666554222111111100 0123447899999999999999988
Q ss_pred hhc
Q 022096 222 HFG 224 (302)
Q Consensus 222 ~f~ 224 (302)
.++
T Consensus 72 ~Le 74 (88)
T PF07292_consen 72 KLE 74 (88)
T ss_pred eEE
Confidence 764
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.97 E-value=0.13 Score=42.23 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=46.3
Q ss_pred CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCcCCceEEEEEcccC
Q 022096 112 DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRVRFSIDM 179 (302)
Q Consensus 112 t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~a~~~ 179 (302)
....|+++|..++.+.....++. -+-..|.|.+.+.|.+|...|+ +..+.|..++|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999888877764 2358999999999999999999 99999999999998543
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.32 E-value=0.24 Score=45.43 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=58.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
...|+|-.+|-.++--||..|+..+-. |.+++|++|.. ..+-..+|.|.+..+|..-. .+||+.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 478999999999999999999987654 99999999753 35567999999999999999 99999988
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.16 E-value=0.051 Score=51.94 Aligned_cols=121 Identities=9% Similarity=0.046 Sum_probs=82.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+..+|||+|+...+..+-++.++..+|-|.+++.+. |||..|.......+|+..++...++|..+.+..-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 347899999999999999999999999998887654 89999999999999998999999999988876642
Q ss_pred cCcccccchhhccCC-CCcccccCCCceEEEccCCCCCCHHHHHHhhccCC
Q 022096 178 DMNSRTRNAEALISP-PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G 227 (302)
..-............ ..........+..+|.|+|-...+....+.+.--+
T Consensus 110 q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~ 160 (668)
T KOG2253|consen 110 QTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISS 160 (668)
T ss_pred hhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccc
Confidence 211111111100000 00000111135577888887777666666664433
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.77 E-value=0.062 Score=52.76 Aligned_cols=72 Identities=29% Similarity=0.290 Sum_probs=58.6
Q ss_pred EEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCce
Q 022096 205 LYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYV 283 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~ 283 (302)
.++.|.+-..+...|..+|++||.|.+++.+++-+ .|.|+|...+.|..|+ +|+|+.+... |-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~---------g~P 365 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVT---------GAP 365 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCccccc---------CCc
Confidence 44455556677788999999999999999988865 5999999999999999 9999996622 455
Q ss_pred EEeecccc
Q 022096 284 LFVSFTYS 291 (302)
Q Consensus 284 l~v~~a~~ 291 (302)
.+|+||+.
T Consensus 366 s~V~~ak~ 373 (1007)
T KOG4574|consen 366 SRVSFAKT 373 (1007)
T ss_pred eeEEeccc
Confidence 77887754
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.71 E-value=0.55 Score=32.33 Aligned_cols=58 Identities=14% Similarity=0.316 Sum_probs=35.9
Q ss_pred CCCHHHHHHhhcCCC-----CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 110 SFDISELLEMFKPFG-----TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 110 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.++..+|..++...+ .|-.|+|..+ |+||+-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467788888886653 4667877654 89999866 5889999999999999999999865
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.97 E-value=0.69 Score=40.35 Aligned_cols=75 Identities=19% Similarity=0.222 Sum_probs=55.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce-EEEEEcc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE-MRVRFSI 177 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-l~v~~a~ 177 (302)
..-|-|-++|+.-. .-|..+|++||.|..+.... +--+-+|.|.+.-+|.+|| ..+|..|+|.. |-|..+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecC
Confidence 35677778887544 45678899999998765542 2238899999999999999 77999997755 4566655
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
++..
T Consensus 269 Dksv 272 (350)
T KOG4285|consen 269 DKSV 272 (350)
T ss_pred CHHH
Confidence 5443
No 206
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.93 E-value=0.84 Score=43.11 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhcc--CCC
Q 022096 151 INSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR--FGT 228 (302)
Q Consensus 151 ~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~--~G~ 228 (302)
.+--..+++...+..++.+-.+|.... ..+.|.|+-||..+-.|+++.+|.. +-.
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~-----------------------kRcIvilREIpettp~e~Vk~lf~~encPk 203 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNH-----------------------KRCIVILREIPETTPIEVVKALFKGENCPK 203 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCc-----------------------ceeEEEEeecCCCChHHHHHHHhccCCCCC
Confidence 344455555556666666655554331 2267889999999999999999964 667
Q ss_pred eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 229 VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 229 i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
+.+|.+-.+.. =||+|++..||+.|.
T Consensus 204 ~iscefa~N~n-------WyITfesd~DAQqAy 229 (684)
T KOG2591|consen 204 VISCEFAHNDN-------WYITFESDTDAQQAY 229 (684)
T ss_pred ceeeeeeecCc-------eEEEeecchhHHHHH
Confidence 88888777642 699999999999997
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.90 E-value=0.66 Score=31.20 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=42.8
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 110 SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 110 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
.++-++++..+..|+-. +|..| .+| -||.|.+.++|++|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778999999999742 23344 333 489999999999999999999887777654
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.76 E-value=0.47 Score=36.81 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=49.4
Q ss_pred CCceEEEccCCCCCC----HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeec
Q 022096 201 SPHKLYVGNLSWAVK----PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQ 275 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~----~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~ 275 (302)
+..+|.|+=|..++. -..+...++.||.|.+|...-.+ -|.|.|.|..+|=+|+ ++... ..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~-~p------ 150 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSR-AP------ 150 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCC-CC------
Confidence 346788866655543 33455566889999999764332 3999999999999999 66653 33
Q ss_pred cccCCCceEEeecc
Q 022096 276 PLFPFNYVLFVSFT 289 (302)
Q Consensus 276 ~~~~~g~~l~v~~a 289 (302)
|..++++|-
T Consensus 151 -----gtm~qCsWq 159 (166)
T PF15023_consen 151 -----GTMFQCSWQ 159 (166)
T ss_pred -----CceEEeecc
Confidence 677888874
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.38 E-value=0.41 Score=39.31 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=42.8
Q ss_pred CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC--CccccceeeeccccCCCceEEeeccc
Q 022096 215 KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 215 ~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~--g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
....|+++|..|+.+....+++. -+ -..|.|.+.++|.+|. .|+ +..+. |..++|-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s--Fr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~-----------g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS--FR----RIRVVFESPESAQRARQLLHWDGTSFN-----------GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT--TT----EEEEE-SSTTHHHHHHHTST--TSEET-----------TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC--CC----EEEEEeCCHHHHHHHHHHhcccccccC-----------CCceEEEEcc
Confidence 45789999999999887777765 33 3899999999999999 999 88888 6677777764
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.26 E-value=0.18 Score=49.68 Aligned_cols=71 Identities=27% Similarity=0.325 Sum_probs=60.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc--CCceEEEEEcc
Q 022096 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--GGREMRVRFSI 177 (302)
Q Consensus 101 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~a~ 177 (302)
+..+.|.+-..+-.-|..+|.+||.|.+.+.+++.. .|.|+|...+.|..|++.|+|.++ -|-+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 345556666677788999999999999999988754 799999999999999999999986 68888888875
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.24 E-value=0.14 Score=47.13 Aligned_cols=72 Identities=21% Similarity=0.337 Sum_probs=55.9
Q ss_pred ceEEEccCCCCC-CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAV-KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~-~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
+.|-+.-.|+.. +-++|...|.+||.|..|.|-.... .|.|+|.+..+|.+|-..++..|+ |
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avln-----------n 435 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLN-----------N 435 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceec-----------C
Confidence 334445556555 4578999999999999998876633 499999999999888888888888 6
Q ss_pred ceEEeecccc
Q 022096 282 YVLFVSFTYS 291 (302)
Q Consensus 282 ~~l~v~~a~~ 291 (302)
+.|+|-|-..
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 7777777544
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.47 E-value=4 Score=27.43 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=38.5
Q ss_pred CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 213 AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 213 ~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.++-++++..+..|+- .+|..|+ +| =||.|.+..+|+++. ..||+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-CE-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 5677899999999954 2344564 43 599999999999999 99999877
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.59 E-value=6.2 Score=37.72 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=62.0
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeeEEEEeeCC----------CCCC---------------------
Q 022096 96 RARPCELYVCNLPRS-FDISELLEMFKPF----GTVLSVEVSRNP----------ETGI--------------------- 139 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~~~~----------~~~~--------------------- 139 (302)
....++|-|-|+.|+ +.-.+|..+|+.| |.|.+|.|.... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445689999999985 7889999998766 689999986421 1111
Q ss_pred ----------------cccEEEEEeCCHHHHHHHHHHhCCCCcC--CceEEEEEcc
Q 022096 140 ----------------SRGCGYLTMGSINSAKNAIIALDGSDVG--GREMRVRFSI 177 (302)
Q Consensus 140 ----------------~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~ 177 (302)
-.=||.|+|.+.+.|.+.++.++|..+. |..|.+.+-.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 0126899999999999999999999995 5666666543
No 214
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.28 E-value=4.5 Score=27.71 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=35.0
Q ss_pred CCCCHHHHHHhhccCCC-----eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEE
Q 022096 212 WAVKPEDLRNHFGRFGT-----VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLF 285 (302)
Q Consensus 212 ~~~~~~~L~~~f~~~G~-----i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~ 285 (302)
..++..+|..++...+. |-.|.|..+ |+||+-.. +.|..++ .|++..+. |+.+.
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~-----------gk~v~ 70 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIK-----------GKKVR 70 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SS-----------S----
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCC-----------CeeEE
Confidence 45677888888876643 777887665 79999975 5788888 99999999 78887
Q ss_pred eecc
Q 022096 286 VSFT 289 (302)
Q Consensus 286 v~~a 289 (302)
|..|
T Consensus 71 ve~A 74 (74)
T PF03880_consen 71 VERA 74 (74)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 7653
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.18 E-value=1.6 Score=34.32 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=71.6
Q ss_pred EEEcCCC--CCCCHHHHHHhhcC-CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 102 LYVCNLP--RSFDISELLEMFKP-FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 102 l~v~nLp--~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
..|+.+. ...+-..|...+.+ ++....+.+..- ..++..+.|.+.+++.+++ ......++|..+.+....+
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~ 91 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSP 91 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhcc
Confidence 4444442 23455555555533 233223333322 2368999999999999998 4555667888888876653
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCC-CCHHHHHHhhccCCCeEEEEEE
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVL 235 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~~~~~L~~~f~~~G~i~~v~i~ 235 (302)
........ ......=|.|.|||.. .+++-|+.+.+.+|.+.++...
T Consensus 92 ~~~~~~~~-----------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 92 DFNPSEVK-----------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccccc-----------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 22111100 0011234788999976 5778899999999999887543
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.86 E-value=6.7 Score=35.76 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=49.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVE 268 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~ 268 (302)
+-.+.|-|.++|.....+||...|+.|+. =-+|.++-|. .||-.|.+...|..||.|-..++
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~l 451 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWL 451 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceE
Confidence 45688999999999999999999999975 4455555553 69999999999999997744443
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=77.57 E-value=1.3 Score=42.67 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=51.4
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
...++||+|+...+..+-++.+...+|.|....... |||..|..+..+.+|+ .++-..++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCC
Confidence 347899999999999999999999999987764433 7999999999999999 77777676
No 218
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=74.23 E-value=4.7 Score=32.63 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=41.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHH
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG--ISRGCGYLTMGSINSAKNAII 159 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~ 159 (302)
..+++|.. +.+..-++|..+-+ |.+.+|.+-+. ..+ ..+|-.||+|.+.+.|.++++
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~-~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRH-GNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeecccc-CCCCCCCCCceEEEeecHHHHHhhhh
Confidence 35778887 44444555666655 88888887554 333 678999999999999999884
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.91 E-value=6.7 Score=34.10 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=36.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCH
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~ 151 (302)
.-|+++||+.++.-.||+..+.+.|.+- ..|-+ ..+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 5599999999999999999998887432 33333 23667899999764
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=70.67 E-value=3.4 Score=35.73 Aligned_cols=76 Identities=21% Similarity=0.424 Sum_probs=48.5
Q ss_pred cCCCCCCCCCEEEEcCCCCCC------------CHHHHHHhhcCCCCeeEEEEee-C----CCCCCc-----ccEEE---
Q 022096 91 EEPRSRARPCELYVCNLPRSF------------DISELLEMFKPFGTVLSVEVSR-N----PETGIS-----RGCGY--- 145 (302)
Q Consensus 91 ~~~~~~~~~~~l~v~nLp~~~------------t~~~l~~~f~~~G~v~~v~i~~-~----~~~~~~-----~g~af--- 145 (302)
++......+.+|++.+||-.+ +++.|+..|..||.|..|.|+. | .-+|+. +||+|
T Consensus 141 demkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~d 220 (445)
T KOG2891|consen 141 DEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGD 220 (445)
T ss_pred hccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcc
Confidence 334444556789999998432 5678999999999999998853 2 223433 44433
Q ss_pred ------EEeCCHHHHHHHHHHhCCCCc
Q 022096 146 ------LTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 146 ------v~f~~~~~a~~a~~~l~~~~~ 166 (302)
|+|..-.--..|+..|.|..+
T Consensus 221 lffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 221 LFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 444444444566666766655
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=67.39 E-value=5.4 Score=32.36 Aligned_cols=75 Identities=15% Similarity=0.290 Sum_probs=53.9
Q ss_pred CEEEEcCCCCCCCH-----HHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc-eEEE
Q 022096 100 CELYVCNLPRSFDI-----SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR-EMRV 173 (302)
Q Consensus 100 ~~l~v~nLp~~~t~-----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~v 173 (302)
.++++.+++..+-. .....+|.+|.+..-.++++ +.+..-|.|.+++.|..|...+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 66888888865422 23456667666555444444 334567899999999999999999999888 8888
Q ss_pred EEcccCc
Q 022096 174 RFSIDMN 180 (302)
Q Consensus 174 ~~a~~~~ 180 (302)
.++....
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 8876543
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=65.19 E-value=24 Score=24.89 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=40.9
Q ss_pred EEEccCCCCCCHHHHHHhhcc-CCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 205 LYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~-~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
-|..-++...+..+|++.++. ||. |.+|....-+. + .--|||.+....+|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHH
Confidence 444557899999999999987 664 88888777652 2 225999999988887765
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.61 E-value=16 Score=33.37 Aligned_cols=56 Identities=21% Similarity=0.433 Sum_probs=46.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL 161 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 161 (302)
-.+.|-|.|+|.....+||...|+.|+. --.|+.+-|. .||..|.+...|..|+ .+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh-hc
Confidence 3688999999999888999999999974 4456666553 6999999999999999 44
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.01 E-value=11 Score=28.53 Aligned_cols=57 Identities=18% Similarity=0.307 Sum_probs=31.8
Q ss_pred eEEEccCCCC---------CCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHH-HHHHHh
Q 022096 204 KLYVGNLSWA---------VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAALSL 263 (302)
Q Consensus 204 ~l~v~nlp~~---------~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A-~~Al~l 263 (302)
++.|-|++.. .+.+.|.+.|+.|..+ +|+.+.++. -++|+++|+|...-.. ..|+.|
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHHH
Confidence 4556666433 3457899999999876 477777754 4789999999875443 555533
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.82 E-value=38 Score=23.48 Aligned_cols=54 Identities=7% Similarity=0.129 Sum_probs=40.2
Q ss_pred EEEccCCCCCCHHHHHHhhcc-CCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 205 LYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~-~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
-|+..++...+..+|++.++. ||. |.+|....-+. + .--|||.+...+.|...-
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 455668999999999999986 564 88887766642 2 224999998888886654
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.78 E-value=37 Score=32.71 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=60.9
Q ss_pred cCCCceEEEccCCCC-CCHHHHHHhhccC----CCeEEEEEEecCC----------CCC---------------------
Q 022096 199 YESPHKLYVGNLSWA-VKPEDLRNHFGRF----GTVVSARVLHDRK----------GQT--------------------- 242 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~-~~~~~L~~~f~~~----G~i~~v~i~~~~~----------~g~--------------------- 242 (302)
...+++|-|-||.|. +.-++|..+|..| |.|.+|.|....- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456688999999985 5678888888654 4799998876320 011
Q ss_pred ----------------cceEEEEEeCCHHHHHHHH-HhCCcccc--ceeeeccccCCC
Q 022096 243 ----------------TRVFGFISFSSDAERDAAL-SLNGTVES--HTVAFQPLFPFN 281 (302)
Q Consensus 243 ----------------~~G~afV~f~~~~~A~~Al-~l~g~~~~--~~~~~~~~~~~g 281 (302)
.--||.|+|.+...|...- .-+|..|. +.+.-.+++|.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 1238999999999999888 99999998 444555566655
No 227
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.47 E-value=36 Score=30.42 Aligned_cols=55 Identities=27% Similarity=0.267 Sum_probs=36.8
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhh
Q 022096 144 GYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHF 223 (302)
Q Consensus 144 afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f 223 (302)
|||+|.+..+|..|.+.+....- +.+.+..|.. +..|.=.||..+..+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APe-----------------------P~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPE-----------------------PDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCC-----------------------cccccccccCCChHHHHHHHHH
Confidence 79999999999999975444332 4446665522 2456677776666666665544
No 228
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.38 E-value=18 Score=27.26 Aligned_cols=49 Identities=16% Similarity=0.162 Sum_probs=27.8
Q ss_pred EEEEcCCCCCC---------CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHH
Q 022096 101 ELYVCNLPRSF---------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSIN 152 (302)
Q Consensus 101 ~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~ 152 (302)
++.|-|++... +.+.|.+.|..|..+. ++.+.++. .+.|++.|.|.+.-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCCh
Confidence 46666776433 4578999999998775 66666543 58899999997643
No 229
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=48.12 E-value=42 Score=29.41 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=35.8
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCH
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 254 (302)
...|+++||+.++.-.||+..+.+-|.+- ..|.... ++|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg----~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKG----HFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeec----CCcceeEecCCc
Confidence 36799999999999999999998877532 2232221 456699999775
No 230
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=46.36 E-value=30 Score=23.31 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=43.4
Q ss_pred HHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 114 SELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 114 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
++|.+-|...| +|..|.-+..+.++...-.-||+.....+...+ ++=..+.|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 46778888888 788888888776777777888888765553332 34455678888887764
No 231
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=44.69 E-value=11 Score=34.39 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=51.6
Q ss_pred CCEEEEcCCCCCCCHH--------HHHHhhcC--CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHH
Q 022096 99 PCELYVCNLPRSFDIS--------ELLEMFKP--FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAII 159 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~ 159 (302)
.+.+|+.+.....+.+ ++...|.. .+.+..+.+.++.....++|..|++|...+.++++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4778998888766554 89999998 6788888888887678899999999999999999873
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.57 E-value=46 Score=22.00 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.1
Q ss_pred HHHHHhhcCCCCeeEEEE
Q 022096 114 SELLEMFKPFGTVLSVEV 131 (302)
Q Consensus 114 ~~l~~~f~~~G~v~~v~i 131 (302)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999886555
No 233
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=44.46 E-value=32 Score=23.28 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=42.2
Q ss_pred HHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 114 SELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 114 ~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+|.+-|...| ++..+.-+..++++.+.-.-+|+.....+... .|+=..+.|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 78889888877766666677777765432222 334455688888887653
No 234
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=42.86 E-value=50 Score=24.76 Aligned_cols=114 Identities=18% Similarity=0.303 Sum_probs=62.0
Q ss_pred CCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--cCCceEEEEEcccCccccc
Q 022096 107 LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD--VGGREMRVRFSIDMNSRTR 184 (302)
Q Consensus 107 Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~a~~~~~~~~ 184 (302)
||+-+ +.|.+.|+.-|+|.+|-.+.. |.+ ..|+-.++|.. ++|. |++.-........-
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtq-------------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQ-------------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEec-------------cCC----chhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 66654 468999999999998865542 111 11222445543 3555 55543321111000
Q ss_pred chhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhcc---CCCeEEEEEEecCCCCCcceEEEEEeCCH
Q 022096 185 NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGR---FGTVVSARVLHDRKGQTTRVFGFISFSSD 254 (302)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~---~G~i~~v~i~~~~~~g~~~G~afV~f~~~ 254 (302)
...+. ..+.+| -|+.++-.+|+++|.+ |..|.+-.+.+|.-.--+-..||.-|...
T Consensus 71 -----~gTPs------gnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 -----QGTPS------GNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred -----ecCCC------CCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 00000 012222 5788999999999964 55666666666632222344788888755
No 235
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=41.76 E-value=28 Score=30.28 Aligned_cols=127 Identities=15% Similarity=0.255 Sum_probs=69.2
Q ss_pred EEEEEeCC----HHHHHHHHHHhCCCCc--CC--ceEEEEEcccCcc--cccchhhccCC---CCcccccCCCceEEEcc
Q 022096 143 CGYLTMGS----INSAKNAIIALDGSDV--GG--REMRVRFSIDMNS--RTRNAEALISP---PKKIFVYESPHKLYVGN 209 (302)
Q Consensus 143 ~afv~f~~----~~~a~~a~~~l~~~~~--~g--~~l~v~~a~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~l~v~n 209 (302)
.-||.|.. ..-..+.+..|+|..+ .| -.|+|.-+..+-. ........... -......+.+.+|++.+
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ 156 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAG 156 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecC
Confidence 56787754 4455666767777655 12 2333333221111 11111111111 11112235567899999
Q ss_pred CCCC------------CCHHHHHHhhccCCCeEEEEEEecC-----CCCCc-----ceEE---------EEEeCCHHHHH
Q 022096 210 LSWA------------VKPEDLRNHFGRFGTVVSARVLHDR-----KGQTT-----RVFG---------FISFSSDAERD 258 (302)
Q Consensus 210 lp~~------------~~~~~L~~~f~~~G~i~~v~i~~~~-----~~g~~-----~G~a---------fV~f~~~~~A~ 258 (302)
||.. -+++.|+..|+.||.|..|.|+.-. -+|+. .||+ ||+|..-....
T Consensus 157 ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa 236 (445)
T KOG2891|consen 157 IPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFA 236 (445)
T ss_pred CcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHH
Confidence 8853 3567899999999999999887531 22333 3343 35555555566
Q ss_pred HHH-HhCCcccc
Q 022096 259 AAL-SLNGTVES 269 (302)
Q Consensus 259 ~Al-~l~g~~~~ 269 (302)
.|+ .|.|..+.
T Consensus 237 ~amdalr~~k~a 248 (445)
T KOG2891|consen 237 QAMDALRGMKLA 248 (445)
T ss_pred HHHHHHhcchHH
Confidence 677 77666543
No 236
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.01 E-value=20 Score=25.59 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFK 121 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~ 121 (302)
...++|.|.|||..+++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3458999999999999999997653
No 237
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=40.93 E-value=65 Score=31.63 Aligned_cols=74 Identities=11% Similarity=0.078 Sum_probs=61.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.+||+.|--..-+..-+..++...+.+...+++.....+..-+-++++|..+..+..|. .|.+..+..+.+.+.
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks~ 585 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKSH 585 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceecc
Confidence 38999998888899999999999999999888887777766678999999999998776 677777766555553
No 238
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.17 E-value=50 Score=29.09 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=44.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCC-------CCCcceEEEEEeCCHHHHH
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK-------GQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~-------~g~~~G~afV~f~~~~~A~ 258 (302)
.+.|.+.|+..+++--.+...|.+||.|++|.++.+.. .....--..+-|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 36788999999988888888899999999999998761 1122335788888876654
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.49 E-value=42 Score=30.60 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=49.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
..|.|.+||+..++.+|.+...++-. +....+...... ..-.+.|||.|.+.++.......++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 67999999999999999888887643 333333321111 12256689999999999888888898886
No 240
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.39 E-value=7.1 Score=36.07 Aligned_cols=77 Identities=8% Similarity=-0.107 Sum_probs=60.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
...|+..+|...++.++.-+|..||-|.-+..-+.-..|...-.+|+.-.. +.+..+|+.+.-..+.|-.+++..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346788999999999999999999999988876665556666678887654 56778887777777778777777664
No 241
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.94 E-value=9.9 Score=35.19 Aligned_cols=64 Identities=8% Similarity=-0.078 Sum_probs=49.3
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~ 267 (302)
.+.++..+|...+++++.-.|+.||.|.-+...+.-++|-..-.+||.-.. .+|..++ .+--+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~ 68 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQT 68 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhh
Confidence 346788899999999999999999999999887776777777788888765 4566666 443333
No 242
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=36.14 E-value=1.2e+02 Score=23.86 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=38.7
Q ss_pred eEEEccCCCCCCHHHHHHhhcc-CCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 022096 204 KLYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAA 260 (302)
Q Consensus 204 ~l~v~nlp~~~~~~~L~~~f~~-~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~A 260 (302)
.-|+.-++...+..+|++.++. |+. |.+|..+.-+. |. --|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHH
Confidence 3455558899999999999986 664 88887776643 21 2499999777766543
No 243
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=34.39 E-value=20 Score=32.83 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=48.6
Q ss_pred CceEEEccCCCCCCH--------HHHHHhhcc--CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 202 PHKLYVGNLSWAVKP--------EDLRNHFGR--FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~--------~~L~~~f~~--~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
.+.+|+.+.+..-.. +++...|.. ++.+..++.-++.....++|.-|++|...+.|++++
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 366777777765544 489999999 667888888888766778999999999999999887
No 244
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.54 E-value=86 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC
Q 022096 140 SRGCGYLTMGSINSAKNAIIALDG 163 (302)
Q Consensus 140 ~~g~afv~f~~~~~a~~a~~~l~~ 163 (302)
.+||-||+=.+..++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 789999999999999999965543
No 245
>PRK11901 hypothetical protein; Reviewed
Probab=30.53 E-value=1.5e+02 Score=26.57 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHHHhCCC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYL--TMGSINSAKNAIIALDGS 164 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv--~f~~~~~a~~a~~~l~~~ 164 (302)
..+|-|-.+ .+++.|..+..+++ +..+++.+....|+.- |..| .|.+.++|..|+..|-..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 456666665 45788888888776 4556666654545443 4333 789999999999887643
No 246
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.31 E-value=66 Score=29.41 Aligned_cols=68 Identities=15% Similarity=0.153 Sum_probs=48.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
...+.|.+||...++.+|.+...++-. +....+.....+ ..-.+.|||.|...++...-. ..+|..|-
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 367899999999999999988877543 433433322111 123567999999999976666 78888765
No 247
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.30 E-value=78 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.093 Sum_probs=24.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 142 GCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 142 g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
.+.+|.|.+..+|-+|-+.|....+.++.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 378999999999999998888776655543
No 248
>CHL00030 rpl23 ribosomal protein L23
Probab=28.37 E-value=1.8e+02 Score=20.91 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=26.3
Q ss_pred EEEccCCCCCCHHHHHHhhcc-CCC-eEEEEEEecC
Q 022096 205 LYVGNLSWAVKPEDLRNHFGR-FGT-VVSARVLHDR 238 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~-~G~-i~~v~i~~~~ 238 (302)
-|+.-++...+..+|++.++. ||. |.+|....-+
T Consensus 21 ~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~ 56 (93)
T CHL00030 21 QYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLP 56 (93)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcC
Confidence 455568999999999999987 664 8888776654
No 249
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=27.63 E-value=8.8 Score=36.54 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=51.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (302)
.++||++|+++.++-.+|..++..+--+..+-+-..........++.|+|...-....|+..||+..+.-..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 578999999999999999999998765555544333222345557888997766666666677777664433
No 250
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.16 E-value=87 Score=25.61 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=38.5
Q ss_pred ceEEEccCCCCCCH-----HHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 203 HKLYVGNLSWAVKP-----EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 203 ~~l~v~nlp~~~~~-----~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
..+.+-+++..+-. .....+|.+|....-.++++ +.+...|-|.+++.|..|. .++++.|.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~ 78 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNG 78 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCC
Confidence 44555566544322 23444555554433333333 3345788999999999999 999999984
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.71 E-value=10 Score=36.20 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=51.8
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.++++++|+++.++-.+|..++..+-.+..+-+..+....+..-+++|.|+---....|. +||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 478999999999999999999999877766655444323334446889998777777777 78877765
No 252
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=26.03 E-value=1.9e+02 Score=21.12 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=25.1
Q ss_pred CCCHHHHHHhh-ccCCCeEEEEEEecC----CCCCcceEEEEEeCCHHHHHH
Q 022096 213 AVKPEDLRNHF-GRFGTVVSARVLHDR----KGQTTRVFGFISFSSDAERDA 259 (302)
Q Consensus 213 ~~~~~~L~~~f-~~~G~i~~v~i~~~~----~~g~~~G~afV~f~~~~~A~~ 259 (302)
..+..+|++-+ +.|+.=.+..++..- -.|+++|||.| |.+.+.|.+
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 55667777655 345542233333321 23677888876 566665553
No 253
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.80 E-value=1.5e+02 Score=20.92 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.5
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
.|.+|+|..-...|+-+|||=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 46788888877679999999999987
No 254
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=23.91 E-value=17 Score=32.71 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=38.8
Q ss_pred HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 022096 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164 (302)
Q Consensus 113 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (302)
...+.+++.+.|.|..-.+.+-. +-|.+||..-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF----NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF----NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh----cCccceEEEEcHHHHHHHHHHHHhc
Confidence 46788888899988876666543 5678999999999999999988865
No 255
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.90 E-value=49 Score=19.26 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=10.2
Q ss_pred CCCCHHHHHHhhcCCCC
Q 022096 109 RSFDISELLEMFKPFGT 125 (302)
Q Consensus 109 ~~~t~~~l~~~f~~~G~ 125 (302)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 35788999999987653
No 256
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=23.59 E-value=2.4e+02 Score=26.24 Aligned_cols=37 Identities=24% Similarity=0.441 Sum_probs=28.4
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeeEEEEe
Q 022096 96 RARPCELYVCNLPRS-FDISELLEMFKPF----GTVLSVEVS 132 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~v~~v~i~ 132 (302)
.....+|-|-||.|+ +...+|...|+.| |.+..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 334578999999985 7788998888765 678888765
No 257
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.03 E-value=2.2e+02 Score=18.35 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=33.0
Q ss_pred HHHHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCcc
Q 022096 217 EDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTV 267 (302)
Q Consensus 217 ~~L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~ 267 (302)
.++-++|.+.|. |.++.+....+ +++-.+.+.+.+.|.++|.-+|..
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~~G~~ 63 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKEAGFA 63 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHHCCCE
Confidence 577888887774 88887755422 367777788877888887666654
No 258
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=7.4e+02 Score=24.45 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCC-----c-CCceEEEEEcccCccccc
Q 022096 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSD-----V-GGREMRVRFSIDMNSRTR 184 (302)
Q Consensus 113 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~-----~-~g~~l~v~~a~~~~~~~~ 184 (302)
-++|.+.|..-+-+..|.+.. -||-++.+.....+....+.+. +.. . .|+++.|+++.+
T Consensus 60 A~~i~~~l~~~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa------ 126 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA------ 126 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC------
Confidence 356667776666677777743 2455555555444444444443 222 2 578999999854
Q ss_pred chhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecC
Q 022096 185 NAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDR 238 (302)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~ 238 (302)
++..-++||.+-..+-=+.|..+++..|. |.....+-|.
T Consensus 127 ---------------NptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 127 ---------------NPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred ---------------CCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 22356899999999999999999999985 8888877774
No 259
>PF05953 Allatostatin: Allatostatin; InterPro: IPR010276 This family consists of allatostatins, bombystatins, helicostatins, cydiastatins and schistostatin from several insect species. Allatostatins (ASTs) of the Tyr/Phe-Xaa-Phe-Gly Leu/Ile-NH2 family are a group of insect neuropeptides that inhibit juvenile hormone biosynthesis by the corpora allata [].; GO: 0005184 neuropeptide hormone activity
Probab=22.08 E-value=67 Score=13.48 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=5.0
Q ss_pred CCCCCCCC
Q 022096 294 SCRTFGVG 301 (302)
Q Consensus 294 ~~~~~~~~ 301 (302)
....||+|
T Consensus 4 ~~Y~FGLG 11 (11)
T PF05953_consen 4 PMYSFGLG 11 (11)
T ss_pred CccccCcC
Confidence 34667776
No 260
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.98 E-value=2.2e+02 Score=22.38 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=25.2
Q ss_pred eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 022096 126 VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163 (302)
Q Consensus 126 v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (302)
|.+|.++.. ..||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 666666554 689999999988888888865543
No 261
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.33 E-value=2e+02 Score=20.39 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=30.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMG 149 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~ 149 (302)
.-|||+|++..+.|.-...+.+..++-.-+-+..+ . + ..||+|-+..
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~-~-n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD-N-N-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc-C-C-CCCEEEEEeC
Confidence 56999999988877655555554444333333333 2 2 7789998874
No 262
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.12 E-value=1.9e+02 Score=20.96 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.7
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
.|++|+|.+-...|+-+|||-|.|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 46788887765668889999999987
No 263
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.10 E-value=71 Score=27.23 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.7
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEE
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR 233 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~ 233 (302)
..++|+-|+|...+++-|..+.++.|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 37899999999999999999999998665543
Done!