Query 022096
Match_columns 302
No_of_seqs 264 out of 2549
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.2E-37 7.6E-42 261.2 19.2 167 98-292 14-181 (213)
2 1l3k_A Heterogeneous nuclear r 100.0 4.5E-37 1.6E-41 255.3 20.4 180 97-299 11-190 (196)
3 1fxl_A Paraneoplastic encephal 100.0 1.7E-36 5.7E-41 245.2 21.7 165 99-289 2-167 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 9.9E-37 3.4E-41 247.0 20.2 165 99-289 3-168 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 1.3E-36 4.5E-41 245.6 19.8 164 100-290 1-165 (166)
6 2qfj_A FBP-interacting repress 100.0 1.1E-36 3.8E-41 256.7 19.0 181 99-296 28-209 (216)
7 2cjk_A Nuclear polyadenylated 100.0 4.7E-37 1.6E-41 248.8 14.0 165 99-293 3-167 (167)
8 3smz_A Protein raver-1, ribonu 100.0 4.6E-35 1.6E-39 257.4 21.9 211 50-294 54-266 (284)
9 3nmr_A Cugbp ELAV-like family 100.0 8.8E-35 3E-39 236.9 21.0 167 98-289 2-174 (175)
10 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-34 5.6E-39 254.9 18.3 210 52-293 80-292 (292)
11 3tyt_A Heterogeneous nuclear r 100.0 1.3E-33 4.4E-38 236.4 18.6 172 98-276 3-198 (205)
12 1fje_B Nucleolin RBD12, protei 100.0 1.1E-34 3.9E-39 236.7 11.8 165 96-293 10-175 (175)
13 2g4b_A Splicing factor U2AF 65 100.0 8.4E-34 2.9E-38 230.7 16.5 157 99-290 4-172 (172)
14 2yh0_A Splicing factor U2AF 65 100.0 1.5E-33 5.2E-38 234.4 17.9 179 99-295 4-197 (198)
15 3pgw_A U1-A; protein-RNA compl 100.0 4.1E-32 1.4E-36 238.3 21.4 176 97-290 7-281 (282)
16 3smz_A Protein raver-1, ribonu 100.0 1.5E-31 5E-36 235.0 20.7 155 99-294 22-177 (284)
17 2adc_A Polypyrimidine tract-bi 100.0 9.8E-32 3.4E-36 229.1 18.4 176 97-292 32-228 (229)
18 1qm9_A Polypyrimidine tract-bi 100.0 5.2E-32 1.8E-36 225.5 15.9 174 99-292 3-197 (198)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-31 5.5E-36 235.7 16.6 162 94-294 36-199 (292)
20 3sde_A Paraspeckle component 1 100.0 7.1E-31 2.4E-35 228.1 19.9 159 97-293 20-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.3E-24 1.1E-28 172.0 15.1 153 128-297 2-155 (158)
22 4f25_A Polyadenylate-binding p 99.9 7.4E-24 2.5E-28 160.8 9.8 109 99-218 5-113 (115)
23 2i2y_A Fusion protein consists 99.9 4.3E-23 1.5E-27 164.0 10.7 139 138-294 10-150 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.8E-22 6.2E-27 148.9 10.8 81 98-178 18-98 (99)
25 3s8s_A Histone-lysine N-methyl 99.9 1.9E-21 6.5E-26 146.1 10.6 85 98-182 5-89 (110)
26 4fxv_A ELAV-like protein 1; RN 99.9 3.9E-21 1.3E-25 141.7 10.6 79 202-291 19-98 (99)
27 2lxi_A RNA-binding protein 10; 99.8 7E-22 2.4E-26 143.5 4.6 82 100-181 2-85 (91)
28 2lkz_A RNA-binding protein 5; 99.8 3.8E-21 1.3E-25 140.4 8.1 80 99-178 9-94 (95)
29 2cq0_A Eukaryotic translation 99.8 2.3E-20 7.8E-25 138.6 12.2 87 95-181 11-97 (103)
30 3md1_A Nuclear and cytoplasmic 99.8 2.6E-20 8.9E-25 132.6 11.0 80 100-179 2-81 (83)
31 1p27_B RNA-binding protein 8A; 99.8 2.4E-20 8.3E-25 139.2 11.2 85 96-180 20-104 (106)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-20 6.7E-25 134.5 10.2 82 98-179 5-86 (87)
33 2kn4_A Immunoglobulin G-bindin 99.8 1.1E-20 3.7E-25 151.4 9.7 131 51-181 11-152 (158)
34 2jrs_A RNA-binding protein 39; 99.8 5.7E-20 1.9E-24 137.7 12.9 86 94-179 21-106 (108)
35 2dnm_A SRP46 splicing factor; 99.8 2.2E-20 7.7E-25 138.6 10.6 87 95-181 9-95 (103)
36 2dnz_A Probable RNA-binding pr 99.8 4.5E-20 1.5E-24 134.9 12.0 84 98-181 4-87 (95)
37 2dgo_A Cytotoxic granule-assoc 99.8 6.2E-20 2.1E-24 139.0 13.0 89 95-183 11-99 (115)
38 2dgs_A DAZ-associated protein 99.8 4.8E-20 1.7E-24 135.8 12.0 85 97-182 8-92 (99)
39 1whw_A Hypothetical protein ri 99.8 3.4E-20 1.2E-24 136.6 10.9 84 98-181 7-90 (99)
40 3p5t_L Cleavage and polyadenyl 99.8 5.2E-21 1.8E-25 138.6 6.3 81 100-180 2-84 (90)
41 2cpz_A CUG triplet repeat RNA- 99.8 5.5E-20 1.9E-24 139.3 12.2 86 96-181 22-107 (115)
42 2do4_A Squamous cell carcinoma 99.8 7.8E-20 2.7E-24 135.0 12.6 84 96-180 14-97 (100)
43 2lxi_A RNA-binding protein 10; 99.8 5.6E-21 1.9E-25 138.6 6.2 84 203-297 2-88 (91)
44 1x5u_A Splicing factor 3B subu 99.8 5.9E-20 2E-24 136.8 11.6 87 95-181 11-97 (105)
45 2la6_A RNA-binding protein FUS 99.8 8.3E-20 2.8E-24 134.6 12.3 83 95-177 9-99 (99)
46 2x1f_A MRNA 3'-END-processing 99.8 4.3E-20 1.5E-24 135.3 10.6 84 99-182 2-85 (96)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.2E-20 1.1E-24 132.8 9.5 80 98-177 6-85 (85)
48 3lqv_A PRE-mRNA branch site pr 99.8 1.6E-20 5.6E-25 142.2 8.4 103 98-228 7-109 (115)
49 2e5h_A Zinc finger CCHC-type a 99.8 7.1E-20 2.4E-24 133.5 11.1 81 97-177 14-94 (94)
50 2d9p_A Polyadenylate-binding p 99.8 1.2E-19 4.1E-24 134.7 12.5 84 97-182 13-96 (103)
51 1oo0_B CG8781-PA, drosophila Y 99.8 3.9E-20 1.3E-24 139.0 10.0 86 95-180 22-107 (110)
52 2cph_A RNA binding motif prote 99.8 8.9E-20 3.1E-24 136.3 11.8 87 95-181 11-99 (107)
53 1x4h_A RNA-binding protein 28; 99.8 6.9E-20 2.4E-24 137.8 11.1 88 95-182 11-104 (111)
54 3s8s_A Histone-lysine N-methyl 99.8 8.2E-20 2.8E-24 137.1 11.3 82 201-293 5-87 (110)
55 1x5s_A Cold-inducible RNA-bind 99.8 5.3E-20 1.8E-24 136.3 10.1 86 97-182 10-95 (102)
56 3md3_A Nuclear and cytoplasmic 99.8 9.6E-20 3.3E-24 146.3 12.4 127 51-177 39-165 (166)
57 3ns6_A Eukaryotic translation 99.8 1.5E-20 5E-25 138.9 7.0 81 99-179 6-93 (100)
58 2dnh_A Bruno-like 5, RNA bindi 99.8 1.9E-19 6.3E-24 134.1 13.1 85 97-182 13-100 (105)
59 1x5t_A Splicing factor 3B subu 99.8 3.7E-20 1.3E-24 135.6 8.9 85 98-182 4-89 (96)
60 2cqc_A Arginine/serine-rich sp 99.8 6.4E-20 2.2E-24 134.0 10.2 81 97-177 13-93 (95)
61 2lea_A Serine/arginine-rich sp 99.8 1.9E-20 6.6E-25 145.9 7.8 125 143-296 6-131 (135)
62 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.7E-20 1.6E-24 136.6 9.3 85 98-182 11-95 (102)
63 3s7r_A Heterogeneous nuclear r 99.8 1.1E-19 3.7E-24 130.6 10.6 79 97-176 9-87 (87)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.9E-20 2.7E-24 147.5 11.0 139 146-295 11-155 (165)
65 2dgp_A Bruno-like 4, RNA bindi 99.8 8.2E-20 2.8E-24 136.3 10.2 87 95-181 9-98 (106)
66 2dng_A Eukaryotic translation 99.8 1.8E-19 6E-24 133.8 11.8 83 97-181 13-95 (103)
67 2cpf_A RNA binding motif prote 99.8 6E-20 2.1E-24 135.0 9.0 84 98-181 4-90 (98)
68 2hvz_A Splicing factor, argini 99.8 2.8E-20 9.7E-25 137.6 7.2 100 100-211 1-100 (101)
69 2fy1_A RNA-binding motif prote 99.8 1.9E-19 6.4E-24 136.6 11.8 83 98-181 6-88 (116)
70 1s79_A Lupus LA protein; RRM, 99.8 7.3E-20 2.5E-24 135.7 9.2 80 98-179 10-89 (103)
71 2lkz_A RNA-binding protein 5; 99.8 2.9E-20 9.9E-25 135.7 6.8 81 200-291 7-94 (95)
72 4a8x_A RNA-binding protein wit 99.8 7.5E-20 2.6E-24 131.6 8.9 82 98-179 3-85 (88)
73 2kxn_B Transformer-2 protein h 99.8 9.9E-20 3.4E-24 140.7 10.1 85 96-180 43-127 (129)
74 2lea_A Serine/arginine-rich sp 99.8 3.7E-20 1.3E-24 144.3 7.5 89 93-181 41-129 (135)
75 1p1t_A Cleavage stimulation fa 99.8 8.3E-20 2.8E-24 135.7 9.0 85 99-183 8-92 (104)
76 3md1_A Nuclear and cytoplasmic 99.8 2.7E-19 9.2E-24 127.3 11.2 80 203-293 2-82 (83)
77 1wi8_A EIF-4B, eukaryotic tran 99.8 1.8E-19 6.2E-24 133.9 10.6 84 97-182 13-97 (104)
78 2div_A TRNA selenocysteine ass 99.8 1.3E-19 4.5E-24 133.5 9.5 82 98-179 8-94 (99)
79 2cpe_A RNA-binding protein EWS 99.8 1.7E-19 5.7E-24 136.2 10.3 87 96-182 12-106 (113)
80 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.1E-19 7.3E-24 129.0 10.3 82 201-293 5-87 (87)
81 2khc_A Testis-specific RNP-typ 99.8 1.3E-19 4.3E-24 138.0 9.6 79 98-176 39-117 (118)
82 2dnz_A Probable RNA-binding pr 99.8 4.6E-19 1.6E-23 129.4 12.2 87 201-298 4-91 (95)
83 3ucg_A Polyadenylate-binding p 99.8 1.8E-19 6.1E-24 130.0 9.7 79 100-179 7-85 (89)
84 3n9u_C Cleavage and polyadenyl 99.8 1.2E-19 4E-24 144.9 9.3 82 99-180 55-138 (156)
85 3ex7_B RNA-binding protein 8A; 99.8 2.3E-19 7.8E-24 138.1 10.6 88 95-182 18-105 (126)
86 2cqd_A RNA-binding region cont 99.8 2.6E-19 9E-24 135.8 10.7 84 96-180 14-97 (116)
87 1whw_A Hypothetical protein ri 99.8 4E-19 1.4E-23 130.8 11.3 90 200-300 6-96 (99)
88 1u6f_A Tcubp1, RNA-binding pro 99.8 5.5E-19 1.9E-23 138.3 12.8 87 96-182 39-125 (139)
89 2cq0_A Eukaryotic translation 99.8 5.5E-19 1.9E-23 131.1 12.0 87 199-296 12-99 (103)
90 2dhg_A TRNA selenocysteine ass 99.8 1.8E-19 6.1E-24 133.9 9.3 85 97-182 7-93 (104)
91 2m2b_A RNA-binding protein 10; 99.8 9.9E-20 3.4E-24 141.2 8.2 85 96-181 20-110 (131)
92 2cq3_A RNA-binding protein 9; 99.8 6.6E-19 2.3E-23 130.6 12.3 85 96-182 12-96 (103)
93 2ywk_A Putative RNA-binding pr 99.8 1.8E-19 6.1E-24 131.6 9.0 80 97-177 14-93 (95)
94 3ulh_A THO complex subunit 4; 99.8 4E-19 1.4E-23 132.7 10.9 80 97-177 27-106 (107)
95 2rs2_A Musashi-1, RNA-binding 99.8 2.3E-19 7.8E-24 134.6 9.5 83 98-181 24-106 (109)
96 2dgs_A DAZ-associated protein 99.8 7.7E-19 2.6E-23 129.3 12.2 87 200-297 8-94 (99)
97 1x5u_A Splicing factor 3B subu 99.8 4.6E-19 1.6E-23 131.9 11.1 89 200-299 13-102 (105)
98 2cqp_A RNA-binding protein 12; 99.8 2.1E-19 7.3E-24 132.0 9.1 82 98-179 14-95 (98)
99 2mss_A Protein (musashi1); RNA 99.8 8.9E-20 3E-24 127.3 6.6 75 101-176 1-75 (75)
100 2dh8_A DAZ-associated protein 99.8 1.4E-19 4.9E-24 134.7 8.1 85 96-181 13-97 (105)
101 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.1E-19 1.7E-23 131.3 11.0 85 96-182 12-96 (103)
102 3p5t_L Cleavage and polyadenyl 99.8 9.5E-20 3.2E-24 131.9 6.8 82 203-295 2-86 (90)
103 2do0_A HnRNP M, heterogeneous 99.8 1.2E-18 4.3E-23 131.5 13.3 84 97-181 13-96 (114)
104 2do4_A Squamous cell carcinoma 99.8 1.2E-18 4E-23 128.6 12.7 84 200-295 15-99 (100)
105 2dgv_A HnRNP M, heterogeneous 99.8 5.3E-19 1.8E-23 128.3 10.7 82 97-180 6-87 (92)
106 2cq4_A RNA binding motif prote 99.8 2.1E-19 7.2E-24 135.9 8.6 81 99-180 25-105 (114)
107 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-18 3.8E-23 132.1 12.6 87 199-296 12-99 (115)
108 1x4e_A RNA binding motif, sing 99.8 7.1E-20 2.4E-24 131.0 5.6 79 98-176 4-82 (85)
109 1p27_B RNA-binding protein 8A; 99.8 8.1E-19 2.8E-23 130.8 11.5 84 200-294 21-105 (106)
110 1x5o_A RNA binding motif, sing 99.8 2.4E-18 8.1E-23 130.0 14.3 83 96-179 22-112 (114)
111 2x1f_A MRNA 3'-END-processing 99.8 4.7E-19 1.6E-23 129.8 9.8 83 202-295 2-85 (96)
112 2cpz_A CUG triplet repeat RNA- 99.8 8.3E-19 2.8E-23 132.8 11.5 86 200-296 23-109 (115)
113 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-19 4.8E-24 126.9 6.7 76 100-176 1-76 (77)
114 2ek1_A RNA-binding protein 12; 99.8 1.4E-19 4.9E-24 132.2 7.0 80 98-177 14-93 (95)
115 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.4E-24 133.0 7.6 81 97-179 17-98 (100)
116 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.7E-19 2.6E-23 140.3 11.7 85 97-181 37-121 (156)
117 2cqc_A Arginine/serine-rich sp 99.8 1.1E-18 3.8E-23 127.3 11.5 81 200-291 13-94 (95)
118 2cqg_A TDP-43, TAR DNA-binding 99.8 9.6E-19 3.3E-23 129.8 11.2 84 96-181 12-95 (103)
119 2dng_A Eukaryotic translation 99.8 1.4E-18 4.9E-23 128.8 12.1 86 200-297 13-98 (103)
120 2dgw_A Probable RNA-binding pr 99.8 1.1E-18 3.7E-23 126.5 11.0 80 97-179 8-87 (91)
121 1x4b_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 136.1 7.6 82 99-181 27-108 (116)
122 1x5t_A Splicing factor 3B subu 99.8 4.6E-19 1.6E-23 129.7 8.9 86 201-297 4-91 (96)
123 2jrs_A RNA-binding protein 39; 99.8 1.2E-18 4.3E-23 130.3 11.4 83 200-293 24-107 (108)
124 2dnm_A SRP46 splicing factor; 99.8 6.5E-19 2.2E-23 130.7 9.7 87 199-296 10-97 (103)
125 3r27_A HnRNP L, heterogeneous 99.8 7E-19 2.4E-23 128.6 9.6 78 96-179 18-97 (100)
126 1sjq_A Polypyrimidine tract-bi 99.8 2.7E-19 9.3E-24 132.1 7.5 80 97-182 14-95 (105)
127 2kt5_A RNA and export factor-b 99.8 2.3E-18 8E-23 132.1 13.1 84 96-180 32-115 (124)
128 2dis_A Unnamed protein product 99.8 5.5E-19 1.9E-23 132.4 9.3 84 98-181 7-94 (109)
129 2qfj_A FBP-interacting repress 99.8 2.2E-18 7.4E-23 144.6 14.0 130 51-180 68-206 (216)
130 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-18 3.7E-23 129.2 10.7 87 200-297 10-97 (102)
131 2cqd_A RNA-binding region cont 99.8 1.5E-18 5.2E-23 131.6 11.8 88 200-299 15-103 (116)
132 1x4h_A RNA-binding protein 28; 99.8 1.7E-18 5.9E-23 130.1 11.9 87 200-297 13-106 (111)
133 2ki2_A SS-DNA binding protein 99.8 8.7E-20 3E-24 132.0 4.6 80 100-180 2-81 (90)
134 2la6_A RNA-binding protein FUS 99.8 1.6E-18 5.3E-23 127.7 11.4 80 200-290 11-99 (99)
135 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.3E-19 2.5E-23 125.6 9.3 80 200-290 5-85 (85)
136 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.4E-19 2.9E-23 129.8 9.9 86 200-296 10-96 (102)
137 2g4b_A Splicing factor U2AF 65 99.8 1E-18 3.5E-23 141.3 11.4 123 51-176 49-171 (172)
138 3pgw_S U1-70K; protein-RNA com 99.8 2.6E-20 8.9E-25 172.2 2.0 84 200-294 100-184 (437)
139 2dgx_A KIAA0430 protein; RRM d 99.8 6.3E-19 2.2E-23 129.1 9.0 80 98-180 8-91 (96)
140 2cpf_A RNA binding motif prote 99.8 9.7E-19 3.3E-23 128.5 9.9 86 201-297 4-93 (98)
141 2cq1_A PTB-like protein L; RRM 99.8 2.4E-18 8.3E-23 126.8 12.0 80 97-182 13-94 (101)
142 2cpi_A CCR4-NOT transcription 99.8 6.8E-19 2.3E-23 132.5 9.2 84 97-180 13-102 (111)
143 2nlw_A Eukaryotic translation 99.8 6.6E-19 2.3E-23 131.2 9.1 81 97-179 13-100 (105)
144 2cpi_A CCR4-NOT transcription 99.8 1.9E-18 6.4E-23 130.0 11.6 90 200-301 13-109 (111)
145 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.5E-23 128.8 11.1 81 97-179 13-94 (104)
146 2dnh_A Bruno-like 5, RNA bindi 99.8 2.8E-18 9.5E-23 127.7 12.4 85 200-296 13-101 (105)
147 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-18 3.8E-23 131.0 10.3 85 200-295 24-109 (110)
148 1x4a_A Splicing factor, argini 99.8 1.5E-18 5.2E-23 130.1 10.8 83 96-181 19-101 (109)
149 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-18 3.9E-23 129.1 9.8 81 97-180 13-93 (102)
150 2e5h_A Zinc finger CCHC-type a 99.8 1.7E-18 5.8E-23 126.2 10.6 80 200-290 14-94 (94)
151 2d9p_A Polyadenylate-binding p 99.8 3.2E-18 1.1E-22 126.9 12.2 84 200-296 13-97 (103)
152 2cpx_A Hypothetical protein FL 99.8 3.9E-19 1.3E-23 134.5 7.3 87 96-182 22-108 (115)
153 2cph_A RNA binding motif prote 99.8 2.3E-18 7.8E-23 128.6 11.4 86 199-295 12-100 (107)
154 3ns6_A Eukaryotic translation 99.8 1.9E-19 6.6E-24 132.9 5.4 81 202-293 6-94 (100)
155 2jwn_A Embryonic polyadenylate 99.8 8.8E-19 3E-23 134.5 9.3 80 100-180 37-116 (124)
156 2cpe_A RNA-binding protein EWS 99.8 1.8E-18 6.2E-23 130.5 10.9 89 199-298 12-109 (113)
157 4f02_A Polyadenylate-binding p 99.8 2.1E-19 7.3E-24 150.9 6.2 129 50-180 54-182 (213)
158 2yh0_A Splicing factor U2AF 65 99.8 1.8E-18 6E-23 143.1 11.6 129 51-180 49-195 (198)
159 2ad9_A Polypyrimidine tract-bi 99.8 1.9E-18 6.5E-23 130.7 10.7 81 97-183 29-111 (119)
160 4f25_A Polyadenylate-binding p 99.8 1.6E-18 5.3E-23 131.3 10.3 79 202-293 5-84 (115)
161 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-18 5.2E-23 139.9 10.9 87 96-182 69-155 (165)
162 2fy1_A RNA-binding motif prote 99.8 2.2E-18 7.6E-23 130.6 11.2 85 200-296 5-90 (116)
163 3s7r_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 123.5 10.8 79 200-289 9-87 (87)
164 2wbr_A GW182, gawky, LD47780P; 99.8 5.2E-19 1.8E-23 124.9 6.9 72 99-176 7-78 (89)
165 2err_A Ataxin-2-binding protei 99.8 1.2E-18 4.1E-23 130.7 9.3 81 97-179 27-107 (109)
166 1wel_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 134.1 9.2 83 97-180 23-105 (124)
167 2dhg_A TRNA selenocysteine ass 99.8 2.3E-18 7.7E-23 127.9 10.7 86 200-297 7-95 (104)
168 2div_A TRNA selenocysteine ass 99.8 1.7E-18 5.8E-23 127.4 9.9 84 200-294 7-96 (99)
169 1wi8_A EIF-4B, eukaryotic tran 99.8 2.8E-18 9.5E-23 127.5 11.0 85 200-296 13-98 (104)
170 1u6f_A Tcubp1, RNA-binding pro 99.8 4.8E-18 1.6E-22 133.0 12.9 89 199-298 39-128 (139)
171 1wex_A Hypothetical protein (r 99.8 2.6E-18 8.8E-23 127.5 10.8 81 96-182 12-94 (104)
172 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-18 7.5E-23 128.4 10.4 85 200-295 11-99 (106)
173 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.4E-18 4.9E-23 136.0 9.7 80 97-176 61-140 (140)
174 2kxn_B Transformer-2 protein h 99.8 2.2E-18 7.4E-23 133.2 10.6 84 199-293 43-127 (129)
175 2db1_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 132.1 9.3 81 97-179 15-98 (118)
176 3ucg_A Polyadenylate-binding p 99.8 2.6E-18 8.9E-23 123.8 10.2 80 203-293 7-86 (89)
177 2i2y_A Fusion protein consists 99.8 1.1E-18 3.9E-23 138.4 9.1 122 52-179 12-148 (150)
178 1b7f_A Protein (SXL-lethal pro 99.8 4.4E-18 1.5E-22 136.9 12.4 124 51-176 43-168 (168)
179 2hgl_A HNRPF protein, heteroge 99.8 1.1E-18 3.9E-23 135.6 8.6 79 98-178 43-124 (136)
180 2cpy_A RNA-binding protein 12; 99.8 9.3E-19 3.2E-23 132.4 7.9 81 98-180 14-95 (114)
181 2krb_A Eukaryotic translation 99.8 5.6E-19 1.9E-23 125.2 6.3 72 100-173 2-80 (81)
182 1x4d_A Matrin 3; structural ge 99.8 1.4E-18 4.7E-23 128.1 8.5 77 98-180 14-93 (102)
183 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.6E-18 1.6E-22 135.7 11.9 90 200-300 37-127 (156)
184 2mss_A Protein (musashi1); RNA 99.8 1.1E-18 3.6E-23 121.8 7.1 75 204-289 1-75 (75)
185 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.4E-23 135.5 7.7 84 200-295 21-111 (131)
186 1iqt_A AUF1, heterogeneous nuc 99.8 3.7E-19 1.3E-23 124.1 4.7 75 101-176 1-75 (75)
187 1s79_A Lupus LA protein; RRM, 99.8 2E-18 6.9E-23 127.9 9.0 79 201-291 10-88 (103)
188 2fc9_A NCL protein; structure 99.8 3.2E-18 1.1E-22 126.5 10.0 81 97-181 13-93 (101)
189 2cqp_A RNA-binding protein 12; 99.8 1.9E-18 6.3E-23 127.0 8.6 83 200-293 13-96 (98)
190 2cqg_A TDP-43, TAR DNA-binding 99.8 1.4E-17 4.7E-22 123.4 13.4 88 199-298 12-99 (103)
191 2ywk_A Putative RNA-binding pr 99.8 3.6E-18 1.2E-22 124.7 9.9 80 200-291 14-94 (95)
192 2fc8_A NCL protein; structure 99.8 6.3E-18 2.2E-22 125.0 11.3 84 95-181 11-94 (102)
193 3n9u_C Cleavage and polyadenyl 99.8 2.1E-18 7E-23 137.6 9.2 81 201-292 54-137 (156)
194 2do0_A HnRNP M, heterogeneous 99.8 1.3E-17 4.6E-22 125.8 13.3 87 200-298 13-100 (114)
195 1x4f_A Matrin 3; structural ge 99.8 4.7E-18 1.6E-22 127.1 10.6 80 96-181 22-104 (112)
196 2dh8_A DAZ-associated protein 99.8 3.5E-18 1.2E-22 127.1 9.9 88 199-297 13-100 (105)
197 2dgw_A Probable RNA-binding pr 99.8 7.1E-18 2.4E-22 122.1 11.2 83 200-295 8-90 (91)
198 2cpj_A Non-POU domain-containi 99.8 5.9E-18 2E-22 124.6 10.9 79 96-180 12-90 (99)
199 2rs2_A Musashi-1, RNA-binding 99.8 4.1E-18 1.4E-22 127.7 10.2 85 200-295 23-107 (109)
200 1p1t_A Cleavage stimulation fa 99.8 2.6E-18 8.9E-23 127.6 9.0 82 202-294 8-90 (104)
201 1x4e_A RNA binding motif, sing 99.8 1.2E-18 4.3E-23 124.5 6.9 79 201-290 4-83 (85)
202 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-18 4.7E-23 128.2 7.2 82 200-293 17-99 (100)
203 2dnq_A RNA-binding protein 4B; 99.8 6.1E-18 2.1E-22 122.2 10.5 78 97-182 6-83 (90)
204 1fje_B Nucleolin RBD12, protei 99.8 2.8E-18 9.6E-23 139.2 9.7 124 50-179 51-174 (175)
205 1wez_A HnRNP H', FTP-3, hetero 99.8 4.9E-18 1.7E-22 125.7 10.1 86 200-298 13-98 (102)
206 3ulh_A THO complex subunit 4; 99.8 6.2E-18 2.1E-22 126.2 10.7 79 200-290 27-106 (107)
207 2dnn_A RNA-binding protein 12; 99.8 2.3E-18 7.7E-23 128.8 8.2 77 99-178 16-92 (109)
208 1fxl_A Paraneoplastic encephal 99.8 5.8E-18 2E-22 135.9 11.2 124 51-176 42-167 (167)
209 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.1E-17 3.6E-22 124.1 11.8 86 199-297 12-98 (103)
210 2dgv_A HnRNP M, heterogeneous 99.7 7.7E-18 2.6E-22 122.1 10.8 84 200-296 6-90 (92)
211 3nmr_A Cugbp ELAV-like family 99.7 7.8E-18 2.7E-22 136.3 12.0 125 51-176 45-174 (175)
212 2khc_A Testis-specific RNP-typ 99.7 2.9E-18 1E-22 130.3 8.9 81 199-290 37-118 (118)
213 2e5j_A Methenyltetrahydrofolat 99.7 7.2E-18 2.5E-22 123.6 10.7 79 97-180 17-95 (97)
214 2a3j_A U1 small nuclear ribonu 99.7 4.1E-18 1.4E-22 130.9 9.7 82 97-181 27-112 (127)
215 2cq3_A RNA-binding protein 9; 99.7 1.5E-17 5.2E-22 123.2 12.5 85 200-297 13-98 (103)
216 3ex7_B RNA-binding protein 8A; 99.7 4.6E-18 1.6E-22 130.8 9.9 86 200-296 20-106 (126)
217 3q2s_C Cleavage and polyadenyl 99.7 2.4E-18 8.3E-23 145.9 9.0 82 98-179 67-150 (229)
218 1why_A Hypothetical protein ri 99.7 7.2E-18 2.5E-22 123.6 10.2 78 97-180 15-94 (97)
219 4a8x_A RNA-binding protein wit 99.7 3.3E-18 1.1E-22 123.0 8.2 81 202-293 4-86 (88)
220 2lmi_A GRSF-1, G-rich sequence 99.7 1.6E-18 5.3E-23 129.6 6.6 80 98-179 10-92 (107)
221 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-19 1.1E-23 131.8 2.9 81 98-180 16-96 (101)
222 1l3k_A Heterogeneous nuclear r 99.7 5.7E-18 2E-22 139.8 10.7 131 51-183 53-187 (196)
223 2jvr_A Nucleolar protein 3; RN 99.7 1.9E-18 6.6E-23 129.5 7.0 78 98-179 27-105 (111)
224 1x4b_A Heterogeneous nuclear r 99.7 1E-17 3.4E-22 127.0 10.9 87 201-298 26-112 (116)
225 2ek1_A RNA-binding protein 12; 99.7 2.6E-18 8.8E-23 125.4 7.3 80 201-291 14-94 (95)
226 2dgx_A KIAA0430 protein; RRM d 99.7 8.4E-18 2.9E-22 123.1 9.8 81 200-294 7-92 (96)
227 1sjq_A Polypyrimidine tract-bi 99.7 5.4E-18 1.9E-22 125.1 8.6 80 200-296 14-96 (105)
228 1x4c_A Splicing factor, argini 99.7 1.2E-17 4.1E-22 124.9 10.7 78 97-181 13-95 (108)
229 2ytc_A PRE-mRNA-splicing facto 99.7 9.2E-18 3.2E-22 119.8 9.5 75 97-177 10-85 (85)
230 2jvo_A Nucleolar protein 3; nu 99.7 7.4E-18 2.5E-22 126.1 9.3 77 97-181 29-105 (108)
231 2lcw_A RNA-binding protein FUS 99.6 1.5E-19 5.2E-24 137.1 0.0 85 98-182 6-98 (116)
232 1x4g_A Nucleolysin TIAR; struc 99.7 4E-18 1.4E-22 127.8 7.7 80 97-182 23-102 (109)
233 2ki2_A SS-DNA binding protein 99.7 1.3E-18 4.3E-23 125.8 4.8 82 203-296 2-84 (90)
234 1x5o_A RNA binding motif, sing 99.7 2.3E-17 7.9E-22 124.5 11.7 90 200-293 23-113 (114)
235 1nu4_A U1A RNA binding domain; 99.7 3.8E-18 1.3E-22 125.0 7.1 82 97-181 6-91 (97)
236 2dis_A Unnamed protein product 99.7 9.6E-18 3.3E-22 125.6 9.5 85 201-296 7-96 (109)
237 1fjc_A Nucleolin RBD2, protein 99.7 3.6E-18 1.2E-22 124.9 6.9 79 97-180 14-92 (96)
238 2xs2_A Deleted in azoospermia- 99.7 1.9E-18 6.6E-23 127.9 5.4 80 98-180 8-87 (102)
239 2fc9_A NCL protein; structure 99.7 1.9E-17 6.7E-22 122.2 10.8 86 200-300 13-99 (101)
240 2jwn_A Embryonic polyadenylate 99.7 1.3E-17 4.4E-22 127.9 10.1 82 202-294 36-117 (124)
241 2kt5_A RNA and export factor-b 99.7 3.6E-17 1.2E-21 125.4 12.6 86 199-296 32-118 (124)
242 2kvi_A Nuclear polyadenylated 99.7 1.1E-17 3.9E-22 122.3 9.3 78 96-181 7-85 (96)
243 2cjk_A Nuclear polyadenylated 99.7 3.5E-18 1.2E-22 137.4 7.2 125 50-179 42-166 (167)
244 1x4a_A Splicing factor, argini 99.7 3.8E-17 1.3E-21 122.4 12.4 85 200-298 20-105 (109)
245 2cq4_A RNA binding motif prote 99.7 4.3E-18 1.5E-22 128.6 7.2 81 202-293 25-105 (114)
246 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.9E-18 1.3E-22 119.4 6.4 76 203-290 1-77 (77)
247 3r27_A HnRNP L, heterogeneous 99.7 1.1E-17 3.9E-22 122.2 9.1 77 200-293 19-98 (100)
248 1wg5_A Heterogeneous nuclear r 99.7 1.7E-17 5.7E-22 123.3 10.1 82 200-293 13-95 (104)
249 2wbr_A GW182, gawky, LD47780P; 99.7 9.1E-18 3.1E-22 118.6 8.1 72 202-290 7-79 (89)
250 2j8a_A Histone-lysine N-methyl 99.7 5.6E-18 1.9E-22 127.6 7.3 79 100-178 3-95 (136)
251 2la4_A Nuclear and cytoplasmic 99.7 7E-18 2.4E-22 124.6 7.8 74 99-178 27-100 (101)
252 2dgt_A RNA-binding protein 30; 99.7 2.1E-17 7.2E-22 119.9 10.2 78 96-181 7-84 (92)
253 2dha_A FLJ20171 protein; RRM d 99.7 3E-18 1E-22 130.8 5.9 80 98-179 22-105 (123)
254 2cpy_A RNA-binding protein 12; 99.7 6.1E-18 2.1E-22 127.8 7.5 82 200-293 13-95 (114)
255 2db1_A Heterogeneous nuclear r 99.7 9.6E-18 3.3E-22 127.5 8.5 81 200-292 15-98 (118)
256 2xnq_A Nuclear polyadenylated 99.7 2.3E-17 7.7E-22 121.0 10.1 76 96-179 19-95 (97)
257 2nlw_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 123.6 9.3 82 200-294 13-102 (105)
258 2fc8_A NCL protein; structure 99.7 5.4E-17 1.9E-21 120.0 12.0 86 199-298 12-98 (102)
259 2cq1_A PTB-like protein L; RRM 99.7 4.1E-17 1.4E-21 120.3 11.1 80 200-296 13-95 (101)
260 2dnn_A RNA-binding protein 12; 99.7 9.4E-18 3.2E-22 125.4 7.6 77 202-291 16-92 (109)
261 2hgl_A HNRPF protein, heteroge 99.7 8.9E-18 3.1E-22 130.5 7.8 81 200-292 42-125 (136)
262 2dgu_A Heterogeneous nuclear r 99.7 2.3E-17 7.7E-22 122.3 9.6 78 98-183 10-87 (103)
263 2cpd_A Apobec-1 stimulating pr 99.7 3.9E-17 1.3E-21 120.1 10.7 77 97-181 13-91 (99)
264 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.5E-17 8.6E-22 128.8 10.2 80 199-289 60-140 (140)
265 1iqt_A AUF1, heterogeneous nuc 99.7 4E-18 1.4E-22 118.8 4.8 75 204-289 1-75 (75)
266 1whx_A Hypothetical protein ri 99.7 1.7E-17 5.8E-22 124.7 8.5 75 99-179 10-84 (111)
267 2err_A Ataxin-2-binding protei 99.7 1.9E-17 6.5E-22 124.1 8.7 80 200-292 27-107 (109)
268 2dnp_A RNA-binding protein 14; 99.7 2.4E-17 8.2E-22 119.1 8.9 76 97-180 7-82 (90)
269 2ad9_A Polypyrimidine tract-bi 99.7 3.4E-17 1.2E-21 123.8 10.0 82 200-298 29-113 (119)
270 2hgn_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 132.7 5.2 81 97-180 44-124 (139)
271 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5E-22 127.4 8.0 78 98-178 41-120 (126)
272 1wel_A RNA-binding protein 12; 99.7 7.3E-18 2.5E-22 129.3 6.1 82 200-292 23-104 (124)
273 1wf1_A RNA-binding protein RAL 99.7 3.8E-17 1.3E-21 122.6 9.8 75 98-180 26-101 (110)
274 2f3j_A RNA and export factor b 99.7 3.1E-17 1.1E-21 133.5 10.0 82 97-179 86-167 (177)
275 2a3j_A U1 small nuclear ribonu 99.7 3E-17 1E-21 126.1 9.2 80 200-293 27-111 (127)
276 2krb_A Eukaryotic translation 99.7 1.3E-17 4.6E-22 118.0 6.7 65 203-269 2-73 (81)
277 2e5g_A U6 snRNA-specific termi 99.7 3.2E-17 1.1E-21 119.4 8.9 77 98-180 7-83 (94)
278 2dnq_A RNA-binding protein 4B; 99.7 1E-16 3.6E-21 115.7 11.3 80 200-298 6-86 (90)
279 1wex_A Hypothetical protein (r 99.7 5.4E-17 1.8E-21 120.3 10.0 80 200-296 13-95 (104)
280 3pgw_S U1-70K; protein-RNA com 99.7 3E-17 1E-21 151.7 10.5 85 97-181 100-184 (437)
281 2lmi_A GRSF-1, G-rich sequence 99.7 9.6E-18 3.3E-22 125.3 5.8 81 200-292 9-92 (107)
282 2hvz_A Splicing factor, argini 99.7 2.5E-17 8.5E-22 121.6 7.8 81 203-299 1-82 (101)
283 2cqh_A IGF-II mRNA-binding pro 99.7 2E-17 6.9E-22 120.2 7.2 77 98-181 7-85 (93)
284 1x4c_A Splicing factor, argini 99.7 1.1E-16 3.9E-21 119.6 11.4 79 200-296 13-97 (108)
285 1fj7_A Nucleolin RBD1, protein 99.7 5.1E-18 1.8E-22 125.3 3.6 84 200-295 15-98 (101)
286 2e44_A Insulin-like growth fac 99.7 5E-17 1.7E-21 118.8 8.8 78 98-179 14-92 (96)
287 1wg1_A KIAA1579 protein, homol 99.7 4.8E-17 1.6E-21 117.0 8.5 74 98-178 4-77 (88)
288 1x5p_A Negative elongation fac 99.7 1.2E-16 3.9E-21 117.1 10.6 78 96-181 12-89 (97)
289 3q2s_C Cleavage and polyadenyl 99.7 3.7E-17 1.3E-21 138.6 8.8 80 201-291 67-149 (229)
290 3egn_A RNA-binding protein 40; 99.7 8.5E-18 2.9E-22 132.2 4.4 85 97-181 43-132 (143)
291 1x4d_A Matrin 3; structural ge 99.7 4.5E-17 1.5E-21 120.0 8.0 78 200-294 13-94 (102)
292 2cpx_A Hypothetical protein FL 99.7 2.2E-17 7.6E-22 124.8 6.0 86 200-296 23-109 (115)
293 2dha_A FLJ20171 protein; RRM d 99.7 3E-17 1E-21 125.3 6.6 80 200-291 21-104 (123)
294 1fjc_A Nucleolin RBD2, protein 99.7 5.3E-17 1.8E-21 118.6 7.6 81 200-296 14-95 (96)
295 2cpj_A Non-POU domain-containi 99.7 1.2E-16 4.3E-21 117.4 9.5 78 200-294 13-91 (99)
296 2diu_A KIAA0430 protein; struc 99.7 1.2E-16 4.1E-21 113.9 8.8 72 100-181 9-86 (96)
297 2dnl_A Cytoplasmic polyadenyla 99.7 7.9E-17 2.7E-21 121.7 8.5 76 98-176 7-85 (114)
298 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 129.2 4.9 84 200-296 44-127 (139)
299 1x4g_A Nucleolysin TIAR; struc 99.7 1.4E-16 4.9E-21 119.2 9.7 81 200-297 23-104 (109)
300 2lcw_A RNA-binding protein FUS 99.5 2.5E-18 8.5E-23 130.4 0.0 87 201-298 6-101 (116)
301 2e5i_A Heterogeneous nuclear r 99.7 5.9E-16 2E-20 117.9 13.1 75 100-180 26-103 (124)
302 1nu4_A U1A RNA binding domain; 99.7 4.2E-17 1.4E-21 119.4 6.4 81 200-294 6-91 (97)
303 3zzy_A Polypyrimidine tract-bi 99.7 1.8E-16 6.1E-21 121.4 10.1 76 100-180 29-107 (130)
304 2jvr_A Nucleolar protein 3; RN 99.7 6.4E-17 2.2E-21 121.2 7.4 78 202-294 28-107 (111)
305 2e5j_A Methenyltetrahydrofolat 99.7 1.7E-16 5.8E-21 116.2 9.4 79 200-294 17-96 (97)
306 2xs2_A Deleted in azoospermia- 99.7 6.5E-17 2.2E-21 119.6 7.1 82 202-296 9-90 (102)
307 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.3E-21 115.4 10.1 75 200-293 20-96 (97)
308 2hgm_A HNRPF protein, heteroge 99.7 5E-17 1.7E-21 124.4 6.5 79 200-291 40-120 (126)
309 1x4f_A Matrin 3; structural ge 99.7 6.7E-17 2.3E-21 120.9 6.9 78 200-294 23-104 (112)
310 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-16 6.6E-21 125.7 10.0 78 99-180 46-125 (164)
311 2la4_A Nuclear and cytoplasmic 99.7 1.3E-16 4.5E-21 117.7 8.4 74 202-292 27-101 (101)
312 3d2w_A TAR DNA-binding protein 99.7 1.6E-16 5.6E-21 114.4 8.5 75 97-180 9-85 (89)
313 2ytc_A PRE-mRNA-splicing facto 99.7 2.5E-16 8.4E-21 112.4 9.4 74 200-290 10-85 (85)
314 3beg_B Splicing factor, argini 99.7 9.9E-17 3.4E-21 121.3 7.7 75 98-179 15-94 (115)
315 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-16 7.9E-21 117.9 9.6 76 200-294 29-105 (108)
316 1why_A Hypothetical protein ri 99.7 3.9E-16 1.3E-20 114.3 10.6 81 200-295 15-96 (97)
317 2cq2_A Hypothetical protein LO 99.7 8.5E-17 2.9E-21 120.4 7.1 76 98-179 24-106 (114)
318 2dgu_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 115.7 10.5 79 200-297 9-88 (103)
319 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-16 4.9E-21 120.4 8.0 81 200-294 6-87 (115)
320 2kvi_A Nuclear polyadenylated 99.7 2.3E-16 7.8E-21 115.3 8.7 79 200-297 8-88 (96)
321 2dgt_A RNA-binding protein 30; 99.7 6.4E-16 2.2E-20 112.0 10.9 79 200-297 8-87 (92)
322 1wf1_A RNA-binding protein RAL 99.7 1.4E-16 4.7E-21 119.5 7.5 76 202-296 27-104 (110)
323 2cpd_A Apobec-1 stimulating pr 99.7 8.7E-16 3E-20 112.8 11.7 77 200-295 13-92 (99)
324 3zzy_A Polypyrimidine tract-bi 99.7 7.6E-16 2.6E-20 117.9 11.2 76 203-292 29-106 (130)
325 3pgw_A U1-A; protein-RNA compl 99.7 6.6E-16 2.2E-20 134.9 12.4 75 98-177 206-281 (282)
326 2dnp_A RNA-binding protein 14; 99.7 5.8E-16 2E-20 111.7 10.0 78 200-296 7-85 (90)
327 2pe8_A Splicing factor 45; RRM 99.7 7E-16 2.4E-20 114.5 10.3 81 98-178 7-93 (105)
328 2j8a_A Histone-lysine N-methyl 99.6 3.1E-16 1.1E-20 118.1 8.2 77 203-290 3-94 (136)
329 1sjr_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 122.4 10.7 79 202-293 46-125 (164)
330 1whx_A Hypothetical protein ri 99.6 2.6E-16 8.8E-21 118.2 7.7 74 202-292 10-84 (111)
331 2hzc_A Splicing factor U2AF 65 99.6 2E-16 6.9E-21 113.3 6.5 70 99-175 6-86 (87)
332 2f3j_A RNA and export factor b 99.6 3.3E-16 1.1E-20 127.5 8.4 82 200-293 86-168 (177)
333 2bz2_A Negative elongation fac 99.6 7.8E-16 2.7E-20 117.4 10.0 77 97-181 37-113 (121)
334 2cq2_A Hypothetical protein LO 99.6 3.1E-16 1.1E-20 117.4 7.3 82 200-294 23-108 (114)
335 3tyt_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 130.2 8.6 123 52-176 41-204 (205)
336 2diu_A KIAA0430 protein; struc 99.6 7.6E-16 2.6E-20 109.8 8.6 71 203-294 10-86 (96)
337 2voo_A Lupus LA protein; RNA-b 99.6 1E-15 3.5E-20 126.3 10.6 80 99-180 109-188 (193)
338 2e44_A Insulin-like growth fac 99.6 8.5E-16 2.9E-20 112.2 9.1 79 201-294 14-94 (96)
339 2adc_A Polypyrimidine tract-bi 99.6 2.4E-15 8.4E-20 127.5 13.1 122 52-178 71-227 (229)
340 2e5i_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 114.2 12.0 76 203-293 26-103 (124)
341 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-16 5.8E-21 114.0 5.1 77 98-181 4-80 (88)
342 1wg1_A KIAA1579 protein, homol 99.6 7.7E-16 2.6E-20 110.6 8.5 75 201-293 4-79 (88)
343 3egn_A RNA-binding protein 40; 99.6 1.4E-16 4.9E-21 125.1 4.8 83 200-293 43-131 (143)
344 2e5g_A U6 snRNA-specific termi 99.6 1.9E-15 6.5E-20 109.9 10.3 80 201-296 7-86 (94)
345 2cqh_A IGF-II mRNA-binding pro 99.6 4.5E-16 1.5E-20 113.0 6.9 78 200-295 6-86 (93)
346 2pe8_A Splicing factor 45; RRM 99.6 2E-15 6.8E-20 112.0 10.4 81 200-291 6-93 (105)
347 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.5E-20 110.3 8.3 78 200-294 9-86 (89)
348 1qm9_A Polypyrimidine tract-bi 99.6 1.5E-15 5.3E-20 125.6 10.4 121 53-178 41-196 (198)
349 1x5p_A Negative elongation fac 99.6 3.8E-15 1.3E-19 109.0 11.3 78 200-296 13-91 (97)
350 3sde_A Paraspeckle component 1 99.6 1.4E-15 4.8E-20 131.5 9.8 121 51-180 56-180 (261)
351 2voo_A Lupus LA protein; RNA-b 99.6 3.5E-15 1.2E-19 123.1 10.9 122 150-291 63-186 (193)
352 3beg_B Splicing factor, argini 99.6 2.1E-15 7.1E-20 114.0 8.5 78 201-296 15-98 (115)
353 2dnl_A Cytoplasmic polyadenyla 99.6 2.3E-15 7.8E-20 113.6 7.8 67 201-268 7-80 (114)
354 3u1l_A PRE-mRNA-splicing facto 99.6 2.9E-15 9.9E-20 126.7 8.7 79 96-180 131-230 (240)
355 1wf0_A TDP-43, TAR DNA-binding 99.6 3.7E-15 1.3E-19 107.0 6.3 79 201-296 4-82 (88)
356 2dit_A HIV TAT specific factor 99.6 2.6E-14 8.8E-19 107.4 11.1 81 96-180 12-103 (112)
357 2bz2_A Negative elongation fac 99.6 1.2E-14 4E-19 110.8 9.2 77 200-295 37-114 (121)
358 2hzc_A Splicing factor U2AF 65 99.5 1.2E-14 4.2E-19 103.8 7.5 69 202-287 6-85 (87)
359 3v4m_A Splicing factor U2AF 65 99.5 1.5E-14 5.2E-19 107.2 7.9 81 98-178 4-96 (105)
360 1jmt_A Splicing factor U2AF 35 99.5 3.1E-15 1.1E-19 110.8 3.2 72 104-176 20-103 (104)
361 2dit_A HIV TAT specific factor 99.5 7.4E-14 2.5E-18 104.9 10.7 81 200-295 13-105 (112)
362 3v4m_A Splicing factor U2AF 65 99.5 2.9E-14 9.8E-19 105.7 7.9 79 201-290 4-95 (105)
363 3ue2_A Poly(U)-binding-splicin 99.5 4.3E-14 1.5E-18 106.9 8.8 80 98-177 19-107 (118)
364 3u1l_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.2E-19 120.7 8.0 90 200-295 132-232 (240)
365 1jmt_A Splicing factor U2AF 35 99.5 1.2E-14 4E-19 107.7 3.6 71 207-289 20-103 (104)
366 3ue2_A Poly(U)-binding-splicin 99.5 1.2E-13 4.1E-18 104.4 8.2 79 201-290 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.3E-17 95.7 10.5 74 100-180 11-91 (100)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 2.7E-12 9.3E-17 93.9 10.3 66 212-295 27-93 (100)
369 3tht_A Alkylated DNA repair pr 99.4 8.2E-13 2.8E-17 117.5 8.3 76 96-177 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.4 3.3E-12 1.1E-16 95.8 9.2 77 98-178 6-92 (114)
371 3tht_A Alkylated DNA repair pr 99.3 1.8E-12 6E-17 115.4 7.8 64 200-269 16-82 (345)
372 3s6e_A RNA-binding protein 39; 99.3 5.1E-12 1.8E-16 94.8 8.0 76 201-291 6-92 (114)
373 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.2E-15 87.5 9.6 76 97-178 16-95 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 2E-10 6.8E-15 81.1 7.2 72 99-179 7-86 (91)
375 2dnr_A Synaptojanin-1; RRM dom 99.1 3.2E-10 1.1E-14 80.0 8.1 73 201-292 6-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.1 4.8E-10 1.6E-14 84.2 8.6 65 199-269 15-84 (121)
377 3dxb_A Thioredoxin N-terminall 99.0 1E-09 3.5E-14 92.1 9.0 67 111-177 141-211 (222)
378 3dxb_A Thioredoxin N-terminall 99.0 1.5E-09 5E-14 91.2 8.0 66 214-290 141-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 2.2E-09 7.4E-14 76.1 6.1 73 200-291 13-94 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.9 1.4E-09 4.7E-14 77.1 4.1 70 98-176 14-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.8 1.8E-08 6.2E-13 72.8 7.7 71 200-287 19-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5.4E-07 1.9E-11 65.1 8.0 72 99-176 21-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 8.8E-06 3E-10 58.3 10.0 87 99-215 8-99 (104)
384 1wey_A Calcipressin 1; structu 97.8 3.8E-05 1.3E-09 55.3 5.7 74 99-178 5-83 (104)
385 1uw4_A UPF3X; nonsense mediate 97.8 8.7E-05 3E-09 52.5 7.3 67 100-166 2-70 (91)
386 1wwh_A Nucleoporin 35, nucleop 97.6 0.00016 5.6E-09 53.4 7.4 62 202-270 24-85 (119)
387 1whv_A Poly(A)-specific ribonu 97.6 0.00037 1.3E-08 49.3 8.3 55 99-162 16-70 (100)
388 2dhx_A Poly (ADP-ribose) polym 97.4 0.0013 4.6E-08 47.0 9.5 55 201-263 7-66 (104)
389 1wey_A Calcipressin 1; structu 97.4 0.00043 1.5E-08 49.8 6.7 75 201-292 4-84 (104)
390 1uw4_A UPF3X; nonsense mediate 97.4 0.0011 3.9E-08 46.7 8.6 68 203-270 2-72 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0012 4.2E-08 48.7 7.1 71 99-177 24-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.1 0.001 3.5E-08 47.2 5.4 54 100-162 7-60 (101)
393 1whv_A Poly(A)-specific ribonu 97.0 0.0037 1.3E-07 44.2 7.5 53 202-263 16-69 (100)
394 2l08_A Regulator of nonsense t 96.9 0.00093 3.2E-08 47.5 4.0 67 100-166 10-78 (97)
395 3ctr_A Poly(A)-specific ribonu 96.4 0.0051 1.8E-07 43.6 5.2 53 203-264 7-60 (101)
396 2l08_A Regulator of nonsense t 95.7 0.013 4.6E-07 41.5 4.7 68 203-270 10-80 (97)
397 3p3d_A Nucleoporin 53; structu 95.7 0.0072 2.5E-07 45.3 3.4 68 203-271 8-89 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.7 0.0056 1.9E-07 56.2 3.2 54 99-158 53-106 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.007 2.4E-07 55.6 3.2 59 201-265 52-110 (464)
400 3p3d_A Nucleoporin 53; structu 95.3 0.017 5.8E-07 43.2 4.2 76 100-177 8-97 (132)
401 3d45_A Poly(A)-specific ribonu 87.7 1.6 5.4E-05 40.6 8.0 56 99-163 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 79.1 5.6 0.00019 36.9 7.8 53 203-264 441-494 (507)
403 2g0c_A ATP-dependent RNA helic 53.1 14 0.00048 24.1 3.6 58 110-176 12-74 (76)
404 4e8u_A Putative uncharacterize 42.1 69 0.0023 24.9 6.3 56 203-261 13-80 (172)
405 4eyt_A Telomerase associated p 41.7 81 0.0028 21.5 8.3 51 203-261 13-63 (129)
406 4e8u_A Putative uncharacterize 40.8 62 0.0021 25.1 5.9 49 100-151 13-72 (172)
407 3j21_T 50S ribosomal protein L 33.5 96 0.0033 21.0 5.3 54 205-261 25-80 (86)
408 3lpe_A Putative transcription 31.1 86 0.003 21.3 4.9 33 125-162 39-71 (92)
409 2i9x_A Putative septation prot 26.0 99 0.0034 21.0 4.3 26 228-253 5-30 (87)
410 2ia9_A Putative septation prot 22.0 1.3E+02 0.0043 21.1 4.3 26 228-253 5-30 (100)
411 2i9z_A Putative septation prot 21.6 1.3E+02 0.0045 21.2 4.3 26 228-253 5-30 (105)
412 4eyt_A Telomerase associated p 20.2 2.1E+02 0.0073 19.4 7.5 67 99-175 12-78 (129)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.2e-37 Score=261.17 Aligned_cols=167 Identities=25% Similarity=0.430 Sum_probs=152.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+.++|||+|||+++|+++|+++|++||+|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHH
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER 257 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A 257 (302)
....... ....+|||+|||+.+++++|+++|++||.|.+|+|++|. +.++|||||+|.+.++|
T Consensus 94 ~~~~~~~---------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRK---------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHH---------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHH
T ss_pred ccccccc---------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHH
Confidence 5432221 123689999999999999999999999999999999985 45899999999999999
Q ss_pred HHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 258 DAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 258 ~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
.+|+ .|||..|+ |+.|.|+|+.++
T Consensus 157 ~~Ai~~lng~~~~-----------g~~i~V~~a~~~ 181 (213)
T 4f02_A 157 ERAIEKMNGMLLN-----------DRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHTTCEET-----------TEECEEEECCCH
T ss_pred HHHHHHhCCCEEC-----------CEEEEEEEcCCC
Confidence 9999 99999999 899999998764
No 2
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.5e-37 Score=255.31 Aligned_cols=180 Identities=21% Similarity=0.313 Sum_probs=151.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 345899999999999999999999999999999999999999999999999999999999995 5999999999999998
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
......... ......++|||+|||+.+++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++
T Consensus 90 ~~~~~~~~~-----------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 90 VSREDSQRP-----------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp CC----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCccccccc-----------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 654332211 112344899999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHhCCccccceeeeccccCCCceEEeeccccCCCCCCCC
Q 022096 257 RDAALSLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCRTFG 299 (302)
Q Consensus 257 A~~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~~~~ 299 (302)
|.+|+..+|..++ |+.|.|.|+.++......+
T Consensus 159 A~~A~~~~~~~~~-----------G~~i~v~~a~~k~~~~~~~ 190 (196)
T 1l3k_A 159 VDKIVIQKYHTVN-----------GHNCEVRKALSKQEMASAS 190 (196)
T ss_dssp HHHHHHCSCCEET-----------TEECEEEECC---------
T ss_pred HHHHHHhCCcEEC-----------CEEEEEEecCChhHhcccc
Confidence 9999966899999 8999999999988766543
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.7e-36 Score=245.18 Aligned_cols=165 Identities=26% Similarity=0.453 Sum_probs=150.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 38999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
.... ....+|||+|||+.+++++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|.
T Consensus 82 ~~~~-----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 82 SSAS-----------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp CCGG-----------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccc-----------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 4321 23478999999999999999999999999999999999889999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
+|+ .|||..+.++ ...|.|+||
T Consensus 145 ~A~~~l~g~~~~g~---------~~~i~v~~A 167 (167)
T 1fxl_A 145 EAIKGLNGQKPSGA---------TEPITVKFA 167 (167)
T ss_dssp HHHHHHTTCCCTTC---------SSCCEEEEC
T ss_pred HHHHHhcCCccCCC---------ccceEEEeC
Confidence 999 8999999931 134888775
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=9.9e-37 Score=247.02 Aligned_cols=165 Identities=24% Similarity=0.443 Sum_probs=152.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 82 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP 82 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence 48999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
.... ...++|+|+|||..+++++|+++|++||.|..+.+.+++.+|+++|||||+|.+.++|.
T Consensus 83 ~~~~-----------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 83 GGES-----------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp CSST-----------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Cccc-----------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 4321 23478999999999999999999999999999999999889999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
+|+ .|||..+.+. ++.|.|+||
T Consensus 146 ~A~~~l~g~~~~g~---------~~~l~V~~A 168 (168)
T 1b7f_A 146 EAISALNNVIPEGG---------SQPLSVRLA 168 (168)
T ss_dssp HHHHHHTTCCCTTC---------SSCCEEEEC
T ss_pred HHHHHhcCCEecCC---------CeEEEEEeC
Confidence 999 8999999721 489999886
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-36 Score=245.56 Aligned_cols=164 Identities=22% Similarity=0.402 Sum_probs=151.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|||+++|+++|+++|++||.|.+|++++++. ++++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999854 789999999999999999999999999999999999998654
Q ss_pred cccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDA 259 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~ 259 (302)
... ......+|||+|||+.+++++|+++|++||.|.++.+.+++.+|.++|||||+|.+.++|.+
T Consensus 80 ~~~---------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQS---------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CCC---------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CCC---------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 321 12345789999999999999999999999999999999999899999999999999999999
Q ss_pred HH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 260 AL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 260 Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
|+ .|||..++ |+.|.|+||.
T Consensus 145 A~~~l~g~~~~-----------g~~i~v~~a~ 165 (166)
T 3md3_A 145 AMDSMQGQDLN-----------GRPLRINWAA 165 (166)
T ss_dssp HHHHHTTCEET-----------TEECEEEESC
T ss_pred HHHHhCCCccC-----------CcEEEEEecC
Confidence 99 89999999 8999999986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.1e-36 Score=256.74 Aligned_cols=181 Identities=19% Similarity=0.316 Sum_probs=157.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++|+++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 37999999999999999999999999999999999988999999999999999999999999999999999999988765
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
........... .......++|||+|||+.+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.
T Consensus 108 ~~~~~~~~~~~------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 108 IGQAQPIIDQL------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp CGGGHHHHHHH------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ccccchhhhhh------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 44322111100 011234589999999999999999999999999999999999989999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
+|+ .|||..|+ |+.|.|.|+..+..+.
T Consensus 182 ~A~~~l~g~~~~-----------g~~i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 182 DAVSSMNLFDLG-----------GQYLRVGKAVTPPMPL 209 (216)
T ss_dssp HHHHHHTTCBCS-----------SSBCEEEECSSCSSTT
T ss_pred HHHHHccCCEeC-----------CcEEEEEEecCCCCCC
Confidence 999 89999999 8999999998886544
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.7e-37 Score=248.78 Aligned_cols=165 Identities=21% Similarity=0.442 Sum_probs=151.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++|+++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++ ++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 4899999999999999999999999999999999999999999999999999999999997 46789999999998754
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
.... ....+|||+|||+.+++++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|.
T Consensus 81 ~~~~-----------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 81 RDEQ-----------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 143 (167)
T ss_dssp HHHH-----------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHH
T ss_pred hhhc-----------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 3221 12368999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 259 AALSLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 259 ~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+|+.+||..++ |+.|.|.|+.+|+
T Consensus 144 ~A~~~~~~~~~-----------g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 144 RVCQNKFIDFK-----------DRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHCSEECSS-----------SSCEEEEECCCCC
T ss_pred HHHhCCCEEeC-----------CeEEEEeecCCCC
Confidence 99999999999 8999999998864
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.6e-35 Score=257.38 Aligned_cols=211 Identities=18% Similarity=0.202 Sum_probs=182.3
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++++++.+...+++..+.+.+++....+...... .....++|||+|||+++++++|+++|++||.|..+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~--------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~ 125 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ--------LQPTDALLCVANLPPSLTQQQFEELVRPFGSLERC 125 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE--------ECCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE--------ecCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEE
Confidence 4567899988888888888888888766544332221 12234799999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEcc
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGN 209 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 209 (302)
+++.+..+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++....... .....++|||+|
T Consensus 126 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~~--------------~~~~~~~l~v~n 191 (284)
T 3smz_A 126 FLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTP--------------ALLHSRCLCVDR 191 (284)
T ss_dssp EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCCT--------------TTTSCSEEEEEC
T ss_pred EEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCCc--------------ccCCccEEEEec
Confidence 999999999999999999999999999999999999999999999986543211 113457899999
Q ss_pred CCCCC-CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEee
Q 022096 210 LSWAV-KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVS 287 (302)
Q Consensus 210 lp~~~-~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~ 287 (302)
||+.+ ++++|+++|+.||.|.+|.|.++. +|+++|+|||+|.+.++|.+|+ .|||..++ |+.|.|+
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-----------g~~l~v~ 259 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG-----------GSHLRVS 259 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET-----------TEECEEE
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC-----------CeEEEEE
Confidence 99996 999999999999999999999997 7999999999999999999999 89999998 8999999
Q ss_pred ccccCCC
Q 022096 288 FTYSKPS 294 (302)
Q Consensus 288 ~a~~k~~ 294 (302)
|+.++..
T Consensus 260 ~a~~~~~ 266 (284)
T 3smz_A 260 FCAPGPP 266 (284)
T ss_dssp ECCSSSC
T ss_pred EecCCCc
Confidence 9987754
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.8e-35 Score=236.95 Aligned_cols=167 Identities=22% Similarity=0.412 Sum_probs=147.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCCcC---CceEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG--ISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMR 172 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~ 172 (302)
+.++|||+|||+++|+++|+++|++||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 35899999999999999999999999999999999998876 89999999999999999999999998875 67888
Q ss_pred EEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeC
Q 022096 173 VRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFS 252 (302)
Q Consensus 173 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~ 252 (302)
+.++...... ....++|||+|||+.+++++|+++|++||.|.+|.+.+++ +|+++|||||+|.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKNN----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCCS----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred Eccccccccc----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 8877543221 1234789999999999999999999999999999999996 5999999999999
Q ss_pred CHHHHHHHH-HhCCccccceeeeccccCCCceEEeecc
Q 022096 253 SDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFT 289 (302)
Q Consensus 253 ~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a 289 (302)
+.++|.+|+ .|||..+.+ ..++.|.|+||
T Consensus 145 ~~~~A~~A~~~l~g~~~~~--------g~~~~l~V~~a 174 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTME--------GCSSPMVVKFA 174 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCT--------TCSSCCEEEEC
T ss_pred CHHHHHHHHHHhcCCcccC--------CCCCCeEEEec
Confidence 999999999 999988762 01389999987
No 10
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-34 Score=254.88 Aligned_cols=210 Identities=19% Similarity=0.275 Sum_probs=167.7
Q ss_pred CcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEE
Q 022096 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFG-TVLSVE 130 (302)
Q Consensus 52 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~ 130 (302)
.++++++.+...+++..+. .+++....+...... ....++|||+|||+++++++|+++|++|| .|..|+
T Consensus 80 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~ 149 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVS---------HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIR 149 (292)
T ss_dssp SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE---------ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEE
T ss_pred CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEE---------ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEE
Confidence 4689997777777766666 466554433322211 12358999999999999999999999999 999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccC
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNL 210 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 210 (302)
++++.. |.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.+.....+. .......++|||+||
T Consensus 150 i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~----------~~~~~~~~~l~v~nl 218 (292)
T 2ghp_A 150 LPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT----------DSATLEGREIMIRNL 218 (292)
T ss_dssp CC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------------CCTTTEEEEEEE
T ss_pred EEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc----------cccCCCCceEEEECC
Confidence 998865 889999999999999999999999999999999999998755433221 012244589999999
Q ss_pred CCC-CCHHHHHHhhccCCCeEEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCceEEeec
Q 022096 211 SWA-VKPEDLRNHFGRFGTVVSARVLHDRK-GQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNYVLFVSF 288 (302)
Q Consensus 211 p~~-~~~~~L~~~f~~~G~i~~v~i~~~~~-~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~ 288 (302)
|+. +++++|+++|++||.|..|+|+++.. +|.++|||||+|.+.++|.+|+.|||..++ |+.|.|+|
T Consensus 219 p~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~-----------g~~i~V~~ 287 (292)
T 2ghp_A 219 STELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLG-----------NREISVSL 287 (292)
T ss_dssp CTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEET-----------TEEEEEEE
T ss_pred CcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEEC-----------CcEEEEEE
Confidence 999 99999999999999999999999876 599999999999999999999999999999 89999999
Q ss_pred cccCC
Q 022096 289 TYSKP 293 (302)
Q Consensus 289 a~~k~ 293 (302)
+.+|+
T Consensus 288 a~~k~ 292 (292)
T 2ghp_A 288 ADKKP 292 (292)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 99874
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.3e-33 Score=236.39 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=139.9
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLP-RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+||| +.+++++|+++|++||.|.+|+++++ .+|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35899999999 89999999999999999999999875 4799999999999999999999999999999999998
Q ss_pred ccCcccccch----------hhccCC-CCc---------ccccCCCceEEEccCCCCCCHHHHHHhhccCCCe--EEEEE
Q 022096 177 IDMNSRTRNA----------EALISP-PKK---------IFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTV--VSARV 234 (302)
Q Consensus 177 ~~~~~~~~~~----------~~~~~~-~~~---------~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i--~~v~i 234 (302)
.......+.. ...... ..+ .....+.++|||+|||+++++++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 7543211100 000000 000 0012345789999999999999999999999998 89999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 235 LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 235 ~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
+.+. +..+|||||+|.+.++|.+|+ .|||..+.++-...|
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 8875 556799999999999999999 999999996544444
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.1e-34 Score=236.75 Aligned_cols=165 Identities=20% Similarity=0.305 Sum_probs=144.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|.+||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 344589999999999999999999999998776 34455567899999999999999999999 6999999999999999
Q ss_pred cccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHH
Q 022096 176 SIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDA 255 (302)
Q Consensus 176 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~ 255 (302)
+....... ....++|||+|||+.+++++|+++|++||.|..+ ..+|.++|||||+|.+.+
T Consensus 88 ~~~~~~~~---------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~ 147 (175)
T 1fje_B 88 PKGRDSKK---------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA 147 (175)
T ss_dssp CCCSSCST---------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHH
T ss_pred CCCccccc---------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHH
Confidence 87543221 1234799999999999999999999999988765 457899999999999999
Q ss_pred HHHHHH-HhCCccccceeeeccccCCCceEEeeccccCC
Q 022096 256 ERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 256 ~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
+|.+|+ .|||..++ |+.|.|+|+.+|+
T Consensus 148 ~A~~A~~~l~g~~~~-----------g~~i~v~~a~~k~ 175 (175)
T 1fje_B 148 DAEKNLEEKQGAEID-----------GRSVSLYYTGEKG 175 (175)
T ss_dssp HHHHHHHHHTEEEET-----------TEEEEEEECSSCC
T ss_pred HHHHHHHHhCCCEEC-----------CeEEEEEecCCCC
Confidence 999999 89999999 8999999998774
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=8.4e-34 Score=230.72 Aligned_cols=157 Identities=22% Similarity=0.443 Sum_probs=142.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
.++|||+|||+++|+++|+++|++| | .|.++.+.+ ++|||||+|.+.++|.+|+ .++|..+.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4899999999999999999999999 6 677776643 5799999999999999999 99999999
Q ss_pred CceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEE
Q 022096 168 GREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFG 247 (302)
Q Consensus 168 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~a 247 (302)
|+.|.|.++...... ...++|||+|||+.+++++|+++|++||.|..+.+.+++.+|+++|||
T Consensus 77 g~~i~v~~~~~~~~~-----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~a 139 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPL-----------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 139 (172)
T ss_dssp TEECEEECCSSCCCC-----------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEE
T ss_pred CceeeecCCcccCCC-----------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEE
Confidence 999999987543221 224889999999999999999999999999999999998899999999
Q ss_pred EEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 248 FISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 248 fV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
||+|.+.++|.+|+ .|||..++ |+.|.|+||.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~-----------g~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLG-----------DKKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEET-----------TEECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEEC-----------CeEEEEEeCC
Confidence 99999999999999 89999999 8999999974
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.5e-33 Score=234.36 Aligned_cols=179 Identities=21% Similarity=0.368 Sum_probs=149.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
.++|||+|||+++++++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 4899999999999999999999999 4 5555555 446899999999999999999 89999999
Q ss_pred CceEEEEEcccCcccccchhhccC---CCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcc
Q 022096 168 GREMRVRFSIDMNSRTRNAEALIS---PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTR 244 (302)
Q Consensus 168 g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~ 244 (302)
|+.|.|.++............... ...........++|||+|||+.+++++|+++|++||.|.+|.+.+++.+|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999998765332211111000 00111123456899999999999999999999999999999999998899999
Q ss_pred eEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCC
Q 022096 245 VFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 245 G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
|||||+|.+.++|.+|+ .|||..++ |+.|.|+|+.++.+.
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~-----------g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLG-----------DKKLLVQRASVGAKN 197 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEET-----------TEECEEEESCCCCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEEC-----------CEEEEEEECCCCCCC
Confidence 99999999999999999 89999999 899999999887653
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=4.1e-32 Score=238.34 Aligned_cols=176 Identities=22% Similarity=0.352 Sum_probs=145.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
...++|||+|||+++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 345899999999999999976 8999999999999886 588999999999999999999999999999999999
Q ss_pred EEEcccCcccccchhhcc-----------------------CC-------------------------------------
Q 022096 173 VRFSIDMNSRTRNAEALI-----------------------SP------------------------------------- 192 (302)
Q Consensus 173 v~~a~~~~~~~~~~~~~~-----------------------~~------------------------------------- 192 (302)
|.++.............. ..
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 999865442100000000 00
Q ss_pred ----------------------------------CCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecC
Q 022096 193 ----------------------------------PKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR 238 (302)
Q Consensus 193 ----------------------------------~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~ 238 (302)
..........++|||+|||+.+++++|+++|++||.|.+|++..++
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 0000122345889999999999999999999999999999999764
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 239 ~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
+|||||+|.+.++|.+|+ .|||..+.+ |+.|+|+|++
T Consensus 244 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~----------g~~l~v~~ak 281 (282)
T 3pgw_A 244 -----HDIAFVEFDNEVQAGAARDALQGFKITQ----------NNAMKISFAK 281 (282)
T ss_pred -----CcEEEEEeCCHHHHHHHHHHcCCcEeCC----------CCEEEEEEec
Confidence 589999999999999999 899999884 7899999975
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.5e-31 Score=235.03 Aligned_cols=155 Identities=18% Similarity=0.274 Sum_probs=144.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++|+++|+++|++|| |..|.+ +.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~- 93 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP- 93 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-
Confidence 38999999999999999999999999 999888 4578999999999999999999999999999999999853
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERD 258 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~ 258 (302)
...+|||+|||+.+++++|+++|++||.|..+.+++++.+|+++|||||+|.+.++|.
T Consensus 94 ----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 151 (284)
T 3smz_A 94 ----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAA 151 (284)
T ss_dssp ----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHH
Confidence 2268999999999999999999999999999999999989999999999999999999
Q ss_pred HHH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 259 AAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 259 ~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
+|+ .|||..++ |+.|.|.|+..+..
T Consensus 152 ~A~~~l~~~~~~-----------g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 152 RAKSDLLGKPLG-----------PRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHHTTCEET-----------TEECEEEECCGGGC
T ss_pred HHHHHhCCCEeC-----------CcEEEEEECCCCCC
Confidence 999 99999999 88999999876653
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=9.8e-32 Score=229.06 Aligned_cols=176 Identities=25% Similarity=0.307 Sum_probs=145.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 97 ARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
...++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|++|++.|+|..+.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3458999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred cccCcccccchhh---------------ccCCCC---cccccCCCceEEEccCCCCCCHHHHHHhhccCC-CeEEEEEEe
Q 022096 176 SIDMNSRTRNAEA---------------LISPPK---KIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLH 236 (302)
Q Consensus 176 a~~~~~~~~~~~~---------------~~~~~~---~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G-~i~~v~i~~ 236 (302)
+............ ....+. ......+.++|||+|||+.+++++|+++|++|| .|.+|+++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 8754221111000 000000 001123458999999999999999999999999 999999976
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 237 DRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 237 ~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
+ .+|||||+|.+.++|.+|+ .|||..+++ |+.|.|+|+.++
T Consensus 187 ~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~----------g~~l~v~~a~~~ 228 (229)
T 2adc_A 187 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGE----------NHHLRVSFSKST 228 (229)
T ss_dssp S-----STTCEEEEESSHHHHHHHHHHHTTCBSSS----------SCBCEEEECSSC
T ss_pred C-----CCcEEEEEECCHHHHHHHHHHHCCCccCC----------CCeEEEEEecCC
Confidence 4 3679999999999999999 899999874 689999998764
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=5.2e-32 Score=225.46 Aligned_cols=174 Identities=24% Similarity=0.296 Sum_probs=144.3
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 99 PCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 99 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.++|||+|||+ ++++++|+++|++||.|.+|++++++ +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 48999999999 99999999999999999999998874 7899999999999999999999999999999999987
Q ss_pred cCcccccchhhc---------------cC---CCCcccccCCCceEEEccCCCCCCHHHHHHhhccCC-CeEEEEEEecC
Q 022096 178 DMNSRTRNAEAL---------------IS---PPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDR 238 (302)
Q Consensus 178 ~~~~~~~~~~~~---------------~~---~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G-~i~~v~i~~~~ 238 (302)
............ .. .........+.++|||+|||+.+++++|+++|++|| .|.+|++.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 543211110000 00 000001123468999999999999999999999999 99999997652
Q ss_pred CCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccC
Q 022096 239 KGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 239 ~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k 292 (302)
+|+|||+|.+.++|.+|+ .|||..+++ |+.|.|+|+.++
T Consensus 158 -----~g~afV~f~~~~~A~~A~~~l~g~~~~~----------g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 -----RKMALIQMGSVEEAVQALIDLHNHDLGE----------NHHLRVSFSKST 197 (198)
T ss_dssp -----SSCEEEECSSHHHHHHHHHHHTSSCCSS----------CCSCCEEEECCC
T ss_pred -----CcEEEEEeCCHHHHHHHHHHhcCCccCC----------CCeEEEEeeccc
Confidence 689999999999999999 899999874 689999998764
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.6e-31 Score=235.69 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=138.5
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
......++|||+|||+++|+++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|+ .++|..+.|+.|.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 112 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAI-TKTHKVVGQNEIIV 112 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHH-TTTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEE
Confidence 34455699999999999999999999999999999999998643 5899999999999999999 69999999999999
Q ss_pred EEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCC-CeEEEEEEecCCCCCcceEEEEEeC
Q 022096 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFS 252 (302)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~G~afV~f~ 252 (302)
.++. .++|||+|||+.+++++|+++|+.|| .|..|.+++++. |.++|||||+|.
T Consensus 113 ~~~~------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~ 167 (292)
T 2ghp_A 113 SHLT------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVT 167 (292)
T ss_dssp EECC------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECS
T ss_pred EECC------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEEC
Confidence 9862 37899999999999999999999999 999999999875 889999999999
Q ss_pred CHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 253 SDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 253 ~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
+.++|.+|+ .|||..+. |+.|.|.|+.++..
T Consensus 168 ~~~~a~~A~~~l~g~~~~-----------g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 168 SKEDARYCVEKLNGLKIE-----------GYTLVTKVSNPLEK 199 (292)
T ss_dssp SHHHHHHHHHHHTTCEET-----------TEECEEEECCCC--
T ss_pred CHHHHHHHHHHhCCCEeC-----------CcEEEEEECCCCcc
Confidence 999999999 79999999 88999999876654
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=7.1e-31 Score=228.07 Aligned_cols=159 Identities=28% Similarity=0.406 Sum_probs=141.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 3458999999999999999999999999999999965 4789999999999999999999999999999999998
Q ss_pred ccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHH
Q 022096 177 IDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAE 256 (302)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~ 256 (302)
.+ ..+|||+|||+.+++++|+++|+.||.|.+|.|+.+ .+|+++|||||+|.+.++
T Consensus 94 ~~-----------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 94 TH-----------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPP 149 (261)
T ss_dssp CC-----------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHH
T ss_pred cc-----------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHH
Confidence 53 368999999999999999999999999999999999 589999999999999999
Q ss_pred HHHHH-Hh-CCccccceeeeccccCCCceEEeeccccCC
Q 022096 257 RDAAL-SL-NGTVESHTVAFQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 257 A~~Al-~l-~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~ 293 (302)
|.+|+ .| +|..+. ...++.|.|.++....
T Consensus 150 A~~A~~~l~~~~~~~--------~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 150 ARKALERCGDGAFLL--------TTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHHHHSCEES--------SSSCCBCEEEECCCEE
T ss_pred HHHHHHHhcCCeEEe--------cCCCceEEEeeccccC
Confidence 99999 88 444442 1126778888876543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=3.3e-24 Score=171.99 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=116.4
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEE
Q 022096 128 SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYV 207 (302)
Q Consensus 128 ~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 207 (302)
.++|+.+.. .++|||||+|.+.++|++|++.+++....+..+.+........... ..............++|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE----GSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC----CCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc----cccccccccCCCCCCEEEE
Confidence 466777643 6899999999999999999988876544333333322111000000 0000111112234589999
Q ss_pred ccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEe
Q 022096 208 GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFV 286 (302)
Q Consensus 208 ~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v 286 (302)
+|||+.+++++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|+ .|||..+. |+.|.|
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-----------g~~l~v 144 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-----------GRELRV 144 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS-----------SSEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC-----------CeEEEE
Confidence 999999999999999999999999999999989999999999999999999999 89999999 899999
Q ss_pred eccccCCCCCC
Q 022096 287 SFTYSKPSCRT 297 (302)
Q Consensus 287 ~~a~~k~~~~~ 297 (302)
.|+.++.....
T Consensus 145 ~~a~~~~~~~~ 155 (158)
T 2kn4_A 145 QMARYGRPPDS 155 (158)
T ss_dssp EEECCSSCCCC
T ss_pred EECCCCCCCCC
Confidence 99988765443
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=7.4e-24 Score=160.83 Aligned_cols=109 Identities=22% Similarity=0.336 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++|+++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|++|++.|+|..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3689999999999999999999999999999999985 45899999999999999999999999999999999999876
Q ss_pred CcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHH
Q 022096 179 MNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPED 218 (302)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~ 218 (302)
+......... ......+|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~---------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGA---------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------
T ss_pred cccccccccc---------ccCCCCceEeCCCCCCccccc
Confidence 5433221111 112235799999999999863
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=4.3e-23 Score=164.03 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=113.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCH
Q 022096 138 GISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKP 216 (302)
Q Consensus 138 ~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~ 216 (302)
...+|+++|+|.+.++|++|++.+ ||..++| .+.+.++........... ..............++|||+|||+.+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH-HHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS-SCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc-cccccccccCCCCCCEEEEeCCCCCCCH
Confidence 568899999999999999999999 9999999 999987754322111100 0011111223345689999999999999
Q ss_pred HHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCC
Q 022096 217 EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 217 ~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~ 294 (302)
++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|+ .|||..+. |+.|.|.|+.++.+
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~-----------g~~l~v~~a~~~~r 150 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLC-----------GCRVRVELSNGEKR 150 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSS-----------SSCCEEEECCCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEEC-----------CeEEEEEEcCCCCC
Confidence 999999999999999999887 5789999999999999999 89999998 89999999988753
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=148.87 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=77.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+++|||+|||+++|+++|+++|++||+|.+|++++++.+|.++|||||+|.+.++|++|++.|||..|.|+.|+|.+|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred c
Q 022096 178 D 178 (302)
Q Consensus 178 ~ 178 (302)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=146.12 Aligned_cols=85 Identities=22% Similarity=0.261 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred cCccc
Q 022096 178 DMNSR 182 (302)
Q Consensus 178 ~~~~~ 182 (302)
.....
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 55443
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=141.67 Aligned_cols=79 Identities=24% Similarity=0.446 Sum_probs=76.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+++++++|+++|++||.|.+|+|++|+.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----------- 87 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----------- 87 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET-----------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC-----------
Confidence 478999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CceEEeecccc
Q 022096 281 NYVLFVSFTYS 291 (302)
Q Consensus 281 g~~l~v~~a~~ 291 (302)
|+.|.|+||.+
T Consensus 88 gr~l~V~~AkP 98 (99)
T 4fxv_A 88 SKTIKVSYARP 98 (99)
T ss_dssp TEECEEEECCB
T ss_pred CEEEEEEEeeC
Confidence 89999999864
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=7e-22 Score=143.45 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=76.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC-CCCcCCceEEEEEcc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD-GSDVGGREMRVRFSI 177 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~a~ 177 (302)
++|||+|||+++|+++|+++|++|| .|.+|+|++++.+|.++|||||+|.+.++|.+|++.++ +..++||.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999998774 567999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 28
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-21 Score=140.40 Aligned_cols=80 Identities=15% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCC--eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC----cCCceEE
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGT--VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD----VGGREMR 172 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~--v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~----~~g~~l~ 172 (302)
-.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|.+|++.|||.. ++||.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 378999999999999999999999995 6799999999999999999999999999999999999974 8999999
Q ss_pred EEEccc
Q 022096 173 VRFSID 178 (302)
Q Consensus 173 v~~a~~ 178 (302)
|++|..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999853
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=138.60 Aligned_cols=87 Identities=21% Similarity=0.394 Sum_probs=81.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++..+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=2.6e-20 Score=132.60 Aligned_cols=80 Identities=33% Similarity=0.557 Sum_probs=77.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
.+|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999754
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=139.17 Aligned_cols=85 Identities=16% Similarity=0.340 Sum_probs=80.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+..+.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97653
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=134.48 Aligned_cols=82 Identities=26% Similarity=0.497 Sum_probs=76.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||.++++++|+++|++||.|.+|++++++.++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 34899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred cC
Q 022096 178 DM 179 (302)
Q Consensus 178 ~~ 179 (302)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 54
No 33
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1.1e-20 Score=151.40 Aligned_cols=131 Identities=24% Similarity=0.246 Sum_probs=101.0
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcC-----------CCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHh
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD-----------DDSSVEEPRSRARPCELYVCNLPRSFDISELLEM 119 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~ 119 (302)
..+||+++.....+++..+....++.......... ..............++|||+|||+++++++|+++
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46788997777777777766554432211111000 0001111222344689999999999999999999
Q ss_pred hcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcc
Q 022096 120 FKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNS 181 (302)
Q Consensus 120 f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~ 181 (302)
|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.....
T Consensus 91 F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 91 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999998999999999999999999999999999999999999999976543
No 34
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=137.69 Aligned_cols=86 Identities=33% Similarity=0.572 Sum_probs=80.6
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 94 RSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 94 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
......++|||+|||+++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
.++..+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998654
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=138.63 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9976543
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=134.86 Aligned_cols=84 Identities=29% Similarity=0.520 Sum_probs=79.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
.+..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6543
No 37
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=6.2e-20 Score=139.01 Aligned_cols=89 Identities=24% Similarity=0.465 Sum_probs=82.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCcccc
Q 022096 175 FSIDMNSRT 183 (302)
Q Consensus 175 ~a~~~~~~~ 183 (302)
++..+....
T Consensus 91 ~a~~~~~~~ 99 (115)
T 2dgo_A 91 WATRKPPAP 99 (115)
T ss_dssp ESSCCCCCS
T ss_pred EccCCCCCC
Confidence 998765443
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=135.81 Aligned_cols=85 Identities=26% Similarity=0.448 Sum_probs=79.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++ |++..|.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 345899999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 765443
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=136.58 Aligned_cols=84 Identities=21% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
+.++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
.+..
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 7654
No 40
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=5.2e-21 Score=138.56 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=73.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
.+|||+|||+++++++|+++|++|| .|.+|++++++.+|+++|||||+|.+.++|++|++.|||..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=5.5e-20 Score=139.33 Aligned_cols=86 Identities=29% Similarity=0.567 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34558999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 976544
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=134.96 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 97654
No 43
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=5.6e-21 Score=138.64 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=77.1
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC-CccccceeeeccccC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN-GTVESHTVAFQPLFP 279 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~-g~~~~~~~~~~~~~~ 279 (302)
++|||+|||+++++++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|+ .++ +..++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---------- 71 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---------- 71 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----------
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----------
Confidence 6899999999999999999999999 7999999999999999999999999999999999 664 55688
Q ss_pred CCceEEeeccccCCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|+|+.++++..+
T Consensus 72 -gr~i~V~~a~~~~~~~~ 88 (91)
T 2lxi_A 72 -GQKVSMHYSDPKPKINE 88 (91)
T ss_dssp -TEEEEEECCCSCCCCSC
T ss_pred -CEEEEEEEcCCCCCCCC
Confidence 89999999998877543
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=136.83 Aligned_cols=87 Identities=25% Similarity=0.367 Sum_probs=81.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++..+..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9976543
No 45
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=134.57 Aligned_cols=83 Identities=25% Similarity=0.430 Sum_probs=78.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLS--------VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
.....++|||+|||+++++++|+++|++||.|.. |++++++.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445699999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CCceEEEEEcc
Q 022096 167 GGREMRVRFSI 177 (302)
Q Consensus 167 ~g~~l~v~~a~ 177 (302)
.|+.|+|.+|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=4.3e-20 Score=135.34 Aligned_cols=84 Identities=20% Similarity=0.470 Sum_probs=79.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||.++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred Cccc
Q 022096 179 MNSR 182 (302)
Q Consensus 179 ~~~~ 182 (302)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=3.2e-20 Score=132.76 Aligned_cols=80 Identities=28% Similarity=0.421 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999873
No 48
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1.6e-20 Score=142.22 Aligned_cols=103 Identities=25% Similarity=0.381 Sum_probs=91.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|.++++ +.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4589999999999999999999999999999999976 5569999999999999999999999999999999999986
Q ss_pred cCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCCC
Q 022096 178 DMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFGT 228 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~ 228 (302)
..... ++++...++++|.++|++||.
T Consensus 84 ~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 43211 566778889999999999985
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=133.53 Aligned_cols=81 Identities=26% Similarity=0.501 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|||..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 022096 177 I 177 (302)
Q Consensus 177 ~ 177 (302)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=134.65 Aligned_cols=84 Identities=30% Similarity=0.475 Sum_probs=78.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|+++.+ ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 35589999999999999999999999999999999998 7999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 776543
No 51
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.9e-20 Score=139.00 Aligned_cols=86 Identities=20% Similarity=0.353 Sum_probs=80.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCc
Q 022096 175 FSIDMN 180 (302)
Q Consensus 175 ~a~~~~ 180 (302)
++..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 52
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.9e-20 Score=136.27 Aligned_cols=87 Identities=24% Similarity=0.442 Sum_probs=80.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCcCCceEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRN-PETGISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREMR 172 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~-~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~ 172 (302)
.....++|||+|||+++++++|+++|++||.|..|+|+++ +.++.++|||||+|.+.++|.+|++.| ||..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3445689999999999999999999999999999999998 789999999999999999999999999 99999999999
Q ss_pred EEEcccCcc
Q 022096 173 VRFSIDMNS 181 (302)
Q Consensus 173 v~~a~~~~~ 181 (302)
|.++..+..
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999976544
No 53
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=137.80 Aligned_cols=88 Identities=22% Similarity=0.422 Sum_probs=81.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC------CCCcCC
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD------GSDVGG 168 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~------~~~~~g 168 (302)
.....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|.+|++.|| +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 33456899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ceEEEEEcccCccc
Q 022096 169 REMRVRFSIDMNSR 182 (302)
Q Consensus 169 ~~l~v~~a~~~~~~ 182 (302)
+.|.|.++..+...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999766443
No 54
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=137.15 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=77.5
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
+.++|||+|||+.+++++|+++|++||.|.+|.|++|+.+|+++|||||+|.+.++|.+|+ .|||+.+.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---------- 74 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---------- 74 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----------
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----------
Confidence 4579999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCceEEeeccccCC
Q 022096 280 FNYVLFVSFTYSKP 293 (302)
Q Consensus 280 ~g~~l~v~~a~~k~ 293 (302)
|+.|.|.++..+.
T Consensus 75 -gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 75 -GNIIHAQLDIKGQ 87 (110)
T ss_dssp -TEECEEEECSTTH
T ss_pred -CeEEEEEECCCCc
Confidence 8999999986553
No 55
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=136.34 Aligned_cols=86 Identities=30% Similarity=0.516 Sum_probs=80.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.+.++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 765543
No 56
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.82 E-value=9.6e-20 Score=146.25 Aligned_cols=127 Identities=25% Similarity=0.348 Sum_probs=107.3
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++++++.....+++..+.+.+++....+...................++|||+|||+++++++|+++|++||.|..+.
T Consensus 39 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 39 KNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 46789998888888888888788887665544433322223334455678999999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
++++..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 119 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 119 VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 99999999999999999999999999999999999999999999985
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.5e-20 Score=138.93 Aligned_cols=81 Identities=22% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCEEEEcCCCC------CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC-ceE
Q 022096 99 PCELYVCNLPR------SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-REM 171 (302)
Q Consensus 99 ~~~l~v~nLp~------~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l 171 (302)
.++|||+|||+ ++++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 37999999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEcccC
Q 022096 172 RVRFSIDM 179 (302)
Q Consensus 172 ~v~~a~~~ 179 (302)
.|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99999654
No 58
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.9e-19 Score=134.09 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC---ceEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG---REMRV 173 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~l~v 173 (302)
...++|||+|||+++++++|+++|++||.|..|+|++++ +|.++|||||+|.+.++|++|++.|||..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999996 79999999999999999999999999999988 99999
Q ss_pred EEcccCccc
Q 022096 174 RFSIDMNSR 182 (302)
Q Consensus 174 ~~a~~~~~~ 182 (302)
.++..+...
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999766543
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.7e-20 Score=135.60 Aligned_cols=85 Identities=26% Similarity=0.563 Sum_probs=79.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSV-EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++||.|..| ++++++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45899999999999999999999999999999 99999899999999999999999999999999999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 765543
No 60
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=134.01 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c
Q 022096 177 I 177 (302)
Q Consensus 177 ~ 177 (302)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 61
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.9e-20 Score=145.94 Aligned_cols=125 Identities=20% Similarity=0.320 Sum_probs=81.6
Q ss_pred EEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHh
Q 022096 143 CGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNH 222 (302)
Q Consensus 143 ~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~ 222 (302)
|+|+.|.+...+..|+..++|....|+.- +.+. .........++|||+|||+.+++++|+++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-----------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~ 67 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-----------------RPPPDVEGMTSLKVDNLTYRTSPDTLRRV 67 (135)
T ss_dssp ------------------------------CCSC-----------------CSCSSGGGCCCEEEECCCSSCHHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC-----------------CCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 68889999999999999998877666541 1111 01112234588999999999999999999
Q ss_pred hccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCCC
Q 022096 223 FGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 223 f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~~ 296 (302)
|++||.|..|.|++++.+++++|||||+|.+.++|.+|+ .|||..+. |+.|.|.|+..+....
T Consensus 68 F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~-----------g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 68 FEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-----------GRELRVQMARYGRPPD 131 (135)
T ss_dssp HGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS-----------SSCCEEEECCCCCCCT
T ss_pred HHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC-----------CEEEEEEECCCCCCCc
Confidence 999999999999999989999999999999999999999 89999999 8999999998776543
No 62
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.7e-20 Score=136.63 Aligned_cols=85 Identities=27% Similarity=0.415 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCccc
Q 022096 178 DMNSR 182 (302)
Q Consensus 178 ~~~~~ 182 (302)
.+...
T Consensus 91 ~~~~~ 95 (102)
T 2cqb_A 91 PMRIK 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 63
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.1e-19 Score=130.64 Aligned_cols=79 Identities=22% Similarity=0.434 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|+ .+++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 34589999999999999999999999999999999999999999999999999999999999 56888999999999875
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=7.9e-20 Score=147.46 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=79.5
Q ss_pred EEeCCHHHHHHHHHHhCCCCcC--CceEEEEEcccCcccccchh---hccCCCCcccccCCCceEEEccCCCCCCHHHHH
Q 022096 146 LTMGSINSAKNAIIALDGSDVG--GREMRVRFSIDMNSRTRNAE---ALISPPKKIFVYESPHKLYVGNLSWAVKPEDLR 220 (302)
Q Consensus 146 v~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~ 220 (302)
.+|.+.++|+.++..+++.... |+.+.+..+........... ...............++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999999987764 77666655322111000000 000011111223446889999999999999999
Q ss_pred HhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccccCCCC
Q 022096 221 NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 221 ~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|. |+.|.|.|+..+...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-----------g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM-----------GQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET-----------TEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC-----------CEEEEEEEecCCCCC
Confidence 99999999999999999999999999999999999999999 89999999 899999999877654
No 65
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=8.2e-20 Score=136.26 Aligned_cols=87 Identities=25% Similarity=0.454 Sum_probs=80.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc---CCceE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV---GGREM 171 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~l 171 (302)
.....++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 334568999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred EEEEcccCcc
Q 022096 172 RVRFSIDMNS 181 (302)
Q Consensus 172 ~v~~a~~~~~ 181 (302)
.|.++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999976543
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.8e-19 Score=133.78 Aligned_cols=83 Identities=28% Similarity=0.468 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++|| |..|+|++++.+++++|||||+|.+.++|++|+ .|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3458999999999999999999999997 999999999999999999999999999999999 99999999999999999
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
..+..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76544
No 67
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6e-20 Score=135.02 Aligned_cols=84 Identities=25% Similarity=0.380 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPE---TGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~---~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
+.++|||+|||+++++++|+++|++||.|..|++++++. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 458999999999999999999999999999999998876 66999999999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++..+..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9976543
No 68
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-20 Score=137.59 Aligned_cols=100 Identities=27% Similarity=0.395 Sum_probs=83.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|||+++++++|+++|++||.|..|.++++ ++|||||+|.+.++|++|++.|+|..+.|+.|.|.++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999986 7899999999999999999999999999999999999876
Q ss_pred cccccchhhccCCCCcccccCCCceEEEccCC
Q 022096 180 NSRTRNAEALISPPKKIFVYESPHKLYVGNLS 211 (302)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 211 (302)
.......... .......+|||+||+
T Consensus 76 ~~~~~~~~~~-------~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPP-------ARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCC-------CSCCCCSCCCSCCCC
T ss_pred CCcccCCCCC-------ccccCCCceecCCCC
Confidence 5332211111 111335789999986
No 69
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=136.61 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=78.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 44899999999999999999999999999999999997 89999999999999999999999999999999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
....
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=135.75 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++|+++|+++|++||.|.+|+|++++. |.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 348999999999999999999999999999999999977 9999999999999999999996 99999999999999986
Q ss_pred cC
Q 022096 178 DM 179 (302)
Q Consensus 178 ~~ 179 (302)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 71
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=135.69 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC--eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc----cccee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT--VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV----ESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~--i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~----~~~~~ 272 (302)
....+|||+|||+.+|+++|+++|++||. |.+|++++|+.+|++||||||+|.+.++|.+|+ .|||.. ++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~--- 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID--- 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET---
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC---
Confidence 34489999999999999999999999995 779999999999999999999999999999999 999974 55
Q ss_pred eeccccCCCceEEeecccc
Q 022096 273 AFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~ 291 (302)
|+.|.|+||.+
T Consensus 84 --------Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 --------GKTIGVDFAKS 94 (95)
T ss_dssp --------TEEEEEEECCC
T ss_pred --------CEEEEEEEccC
Confidence 89999999875
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=7.5e-20 Score=131.63 Aligned_cols=82 Identities=18% Similarity=0.445 Sum_probs=77.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI-SRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++||.|..|.++.++.++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 358999999999999999999999999999999999887766 9999999999999999999999999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 73
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=9.9e-20 Score=140.71 Aligned_cols=85 Identities=27% Similarity=0.448 Sum_probs=79.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++.|+|..|.|+.|.|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+..+.
T Consensus 123 a~~~~ 127 (129)
T 2kxn_B 123 SITKR 127 (129)
T ss_dssp CSSSS
T ss_pred ecCCC
Confidence 87654
No 74
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.7e-20 Score=144.31 Aligned_cols=89 Identities=28% Similarity=0.372 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 93 PRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 93 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
+......++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|++|++.|||..|.|+.|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 33444568999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcccCcc
Q 022096 173 VRFSIDMNS 181 (302)
Q Consensus 173 v~~a~~~~~ 181 (302)
|.++.....
T Consensus 121 V~~a~~~~~ 129 (135)
T 2lea_A 121 VQMARYGRP 129 (135)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.3e-20 Score=135.73 Aligned_cols=85 Identities=25% Similarity=0.444 Sum_probs=80.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 38999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred Ccccc
Q 022096 179 MNSRT 183 (302)
Q Consensus 179 ~~~~~ 183 (302)
.....
T Consensus 88 ~~~~~ 92 (104)
T 1p1t_A 88 EKNKE 92 (104)
T ss_dssp TTHHH
T ss_pred ccchh
Confidence 65443
No 76
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.7e-19 Score=127.30 Aligned_cols=80 Identities=30% Similarity=0.513 Sum_probs=77.0
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
.+|||+|||+.+++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|+ .|||..+. |
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~-----------g 70 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN-----------G 70 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET-----------T
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC-----------C
Confidence 58999999999999999999999999999999999989999999999999999999999 89999999 8
Q ss_pred ceEEeeccccCC
Q 022096 282 YVLFVSFTYSKP 293 (302)
Q Consensus 282 ~~l~v~~a~~k~ 293 (302)
+.|.|+|+.++.
T Consensus 71 ~~l~v~~a~~~~ 82 (83)
T 3md1_A 71 RPLRINWAAKLE 82 (83)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEecCcCC
Confidence 999999998875
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=133.94 Aligned_cols=84 Identities=21% Similarity=0.476 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET-GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
...++|||+|||+++++++|+++|++|| |..|+|++++.+ ++++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4458999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9776543
No 78
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=133.45 Aligned_cols=82 Identities=20% Similarity=0.411 Sum_probs=78.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCee-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce----EE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVL-SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE----MR 172 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~-~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~----l~ 172 (302)
..++|||+|||+++++++|+++|++||.|. .|++++++.++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 458999999999999999999999999999 9999999999999999999999999999999999999999999 99
Q ss_pred EEEcccC
Q 022096 173 VRFSIDM 179 (302)
Q Consensus 173 v~~a~~~ 179 (302)
|.++...
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9998654
No 79
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=136.21 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=80.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVL--------SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
....++|||+|||+++++++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred CceEEEEEcccCccc
Q 022096 168 GREMRVRFSIDMNSR 182 (302)
Q Consensus 168 g~~l~v~~a~~~~~~ 182 (302)
|+.|.|.++..+...
T Consensus 92 g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 92 GSKLKVSLARKKPPM 106 (113)
T ss_dssp TEECEEECSSCCCCS
T ss_pred CCEEEEEECCCCCCC
Confidence 999999999765443
No 80
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=2.1e-19 Score=129.00 Aligned_cols=82 Identities=24% Similarity=0.465 Sum_probs=75.6
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---------- 74 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---------- 74 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----------
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----------
Confidence 3478999999999999999999999999999999999889999999999999999999999 89999999
Q ss_pred CCceEEeeccccCC
Q 022096 280 FNYVLFVSFTYSKP 293 (302)
Q Consensus 280 ~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+.+++
T Consensus 75 -g~~l~v~~a~~kp 87 (87)
T 3bs9_A 75 -GRQIRTNWATRKP 87 (87)
T ss_dssp -TEECEEEEEC---
T ss_pred -CeEEEEEecCCCC
Confidence 8999999998764
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.3e-19 Score=137.97 Aligned_cols=79 Identities=32% Similarity=0.653 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|++|++.|||..|+|+.|+|.++
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999999987
No 82
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=129.44 Aligned_cols=87 Identities=25% Similarity=0.394 Sum_probs=81.7
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++||.|.+|.+.+++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---------- 73 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---------- 73 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----------
Confidence 4589999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCceEEeeccccCCCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+.++...+.-
T Consensus 74 -g~~l~V~~a~~~~~~~~~ 91 (95)
T 2dnz_A 74 -GRPMRVGHVTERLDGGSG 91 (95)
T ss_dssp -SSCCEEEESSCCCCCCCC
T ss_pred -CcEEEEEEcccccCCCCC
Confidence 899999999988776544
No 83
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=1.8e-19 Score=129.99 Aligned_cols=79 Identities=25% Similarity=0.349 Sum_probs=76.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|+ .+||..+.|+.|.|.++...
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 79999999999999999999999999999999999889999999999999999999999 99999999999999998653
No 84
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=144.86 Aligned_cols=82 Identities=22% Similarity=0.360 Sum_probs=78.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.++|||+|||+++++++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 38999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 135 ~~~~ 138 (156)
T 3n9u_C 135 TRQN 138 (156)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 6543
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.3e-19 Score=138.15 Aligned_cols=88 Identities=16% Similarity=0.326 Sum_probs=81.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 33456899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EcccCccc
Q 022096 175 FSIDMNSR 182 (302)
Q Consensus 175 ~a~~~~~~ 182 (302)
++..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99766544
No 86
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=135.78 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=78.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++.+++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34558999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+....
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97543
No 87
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=130.85 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=83.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 76 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ--------- 76 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 34589999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTFGV 300 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~~~ 300 (302)
|+.|.|.++..+.....-+.
T Consensus 77 --g~~l~V~~a~~~~~~~~~~~ 96 (99)
T 1whw_A 77 --GRMLHVLPSTIKKEASQSGP 96 (99)
T ss_dssp --SCEEEEEECCCCSTTCCCCC
T ss_pred --CcEEEEEEcCCCcccccCCC
Confidence 89999999999887655543
No 88
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=138.33 Aligned_cols=87 Identities=28% Similarity=0.443 Sum_probs=81.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|+.||.|..|+|++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9766544
No 89
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=131.07 Aligned_cols=87 Identities=22% Similarity=0.359 Sum_probs=81.6
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-------- 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD-------- 83 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC--------
Confidence 355689999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 84 ---g~~l~v~~a~~~~~~~ 99 (103)
T 2cq0_A 84 ---HLILNVEWAKPSTNSG 99 (103)
T ss_dssp ---TEECEEEESSCCCCSC
T ss_pred ---CcEEEEEECCCCCCCC
Confidence 8999999998887654
No 90
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=133.94 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-cCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKP-FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~l~v~ 174 (302)
...++|||+|||+++++++|+++|++ ||.|..|+|++++ +|.++|||||+|.+.++|.+|++.|+|.. |.|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 34589999999999999999999999 9999999999997 89999999999999999999999999999 999999999
Q ss_pred EcccCccc
Q 022096 175 FSIDMNSR 182 (302)
Q Consensus 175 ~a~~~~~~ 182 (302)
++..+...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99765443
No 91
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-20 Score=141.21 Aligned_cols=85 Identities=19% Similarity=0.389 Sum_probs=78.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----CcCCc
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLS--VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS----DVGGR 169 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~ 169 (302)
....++|||+|||+++|+++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|++.|||. .+.||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345589999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred eEEEEEcccCcc
Q 022096 170 EMRVRFSIDMNS 181 (302)
Q Consensus 170 ~l~v~~a~~~~~ 181 (302)
.|.|.++.....
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 92
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.6e-19 Score=130.63 Aligned_cols=85 Identities=32% Similarity=0.471 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|++++. .++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34558999999999999999999999999999999998854 3899999999999999999999999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9766543
No 93
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=131.64 Aligned_cols=80 Identities=24% Similarity=0.347 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|++++++. +.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 3458999999999999999999999999999999999975 999999999999999999999999999999999999987
Q ss_pred c
Q 022096 177 I 177 (302)
Q Consensus 177 ~ 177 (302)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=4e-19 Score=132.71 Aligned_cols=80 Identities=24% Similarity=0.356 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+.+++++|+++|++||.|..|+++.++ +|.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 445899999999999999999999999999999999997 8999999999999999999999999999999999999997
Q ss_pred c
Q 022096 177 I 177 (302)
Q Consensus 177 ~ 177 (302)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=2.3e-19 Score=134.61 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.+ +..|+|+.|.|.++.
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~ 102 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAF 102 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEcc
Confidence 3489999999999999999999999999999999999999999999999999999999999765 688999999999997
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
.+..
T Consensus 103 ~~~~ 106 (109)
T 2rs2_A 103 PRRA 106 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 96
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.7e-19 Score=129.31 Aligned_cols=87 Identities=24% Similarity=0.383 Sum_probs=81.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+|+.|||..+.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~---------- 77 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIM---------- 77 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSS----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEEC----------
Confidence 4458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeeccccCCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 78 -g~~l~V~~a~~~~~~~~ 94 (99)
T 2dgs_A 78 -GKKVEVKRAEPRDSKSS 94 (99)
T ss_dssp -SCBCEEEECCCCCCCCC
T ss_pred -CeEEEEEECCCCcccCC
Confidence 89999999998876554
No 97
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.6e-19 Score=131.93 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 83 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY--------- 83 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---------
Confidence 45689999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTFG 299 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~~ 299 (302)
|+.|.|.|+..+.....-|
T Consensus 84 --g~~l~v~~a~~~~~~~~~~ 102 (105)
T 1x5u_A 84 --GKPIRVNKASAHNKNLSGP 102 (105)
T ss_dssp --SCBCEEEETTTTSCCCCCC
T ss_pred --CeEEEEEECCCCCcCCCCC
Confidence 8999999999888766544
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=132.05 Aligned_cols=82 Identities=22% Similarity=0.403 Sum_probs=77.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 34899999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred cC
Q 022096 178 DM 179 (302)
Q Consensus 178 ~~ 179 (302)
..
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 99
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=8.9e-20 Score=127.29 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=71.9
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 101 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
+|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++ ++|..+.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999995 9999999999999875
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=134.73 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|++++++.++.++|||||+|.+.++|++|++. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34558999999999999999999999999999999999999999999999999999999999977 99999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 876543
No 101
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=131.26 Aligned_cols=85 Identities=22% Similarity=0.398 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|++++.+ ++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 345589999999999999999999999999999999998543 689999999999999999999999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9775443
No 102
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=9.5e-20 Score=131.87 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=71.7
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
.+|||+|||+.+++++|+++|++|| .|.+|+++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---------- 71 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---------- 71 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----------
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----------
Confidence 5799999999999999999999999 9999999999999999999999999999999999 99999999
Q ss_pred CCceEEeeccccCCCC
Q 022096 280 FNYVLFVSFTYSKPSC 295 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.++.++...
T Consensus 72 -gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 72 -GQNPVVTPSNKLEHH 86 (90)
T ss_dssp -SCCCEECCC------
T ss_pred -CEEEEEEECCCCccc
Confidence 899999999887654
No 103
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=131.55 Aligned_cols=84 Identities=25% Similarity=0.322 Sum_probs=77.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|+|+.++ ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345899999999999999999999999999999999996 5999999999999999999999999999999999999998
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 75433
No 104
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=128.59 Aligned_cols=84 Identities=20% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+..++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 84 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK--------- 84 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 445899999999999999999999999999999999998 8999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 85 --g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 85 --ENIIKVAISNSGPSS 99 (100)
T ss_dssp --SCEEEEEECCCCSCC
T ss_pred --CEEEEEEECCCCCCC
Confidence 899999999887653
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=5.3e-19 Score=128.31 Aligned_cols=82 Identities=30% Similarity=0.581 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|+++++ ++.++|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 34589999999999999999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 84 ~~~~ 87 (92)
T 2dgv_A 84 RNAS 87 (92)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 7654
No 106
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=135.88 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=77.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 489999999999999999999999999999999999999999999999999999999999 9999999999999999865
Q ss_pred Cc
Q 022096 179 MN 180 (302)
Q Consensus 179 ~~ 180 (302)
+.
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 107
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=1.1e-18 Score=132.07 Aligned_cols=87 Identities=24% Similarity=0.473 Sum_probs=81.1
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-------- 83 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG-------- 83 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET--------
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--------
Confidence 345689999999999999999999999999999999999889999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+....
T Consensus 84 ---g~~l~V~~a~~~~~~~ 99 (115)
T 2dgo_A 84 ---GRQIRTNWATRKPPAP 99 (115)
T ss_dssp ---TEECEEEESSCCCCCS
T ss_pred ---CEEEEEEEccCCCCCC
Confidence 8999999998876644
No 108
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.1e-20 Score=131.00 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++||.|..|+++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999987654
No 109
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.1e-19 Score=130.81 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=79.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.+++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 91 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--------- 91 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---------
Confidence 44588999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+.++..
T Consensus 92 --g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 92 --GQPISVDWCFVRGP 105 (106)
T ss_dssp --SSBCEEEESEESSC
T ss_pred --CcEEEEEeecCCCC
Confidence 89999999988754
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-18 Score=130.02 Aligned_cols=83 Identities=35% Similarity=0.586 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc--------C
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--------G 167 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--------~ 167 (302)
....++|||+|||+++++++|+++|++||.|..|+|++++ ++.++|||||+|.+.++|.+|++.|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999 5
Q ss_pred CceEEEEEcccC
Q 022096 168 GREMRVRFSIDM 179 (302)
Q Consensus 168 g~~l~v~~a~~~ 179 (302)
++.|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998643
No 111
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=4.7e-19 Score=129.75 Aligned_cols=83 Identities=17% Similarity=0.366 Sum_probs=78.7
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+.+++++|+++|++||.|.+|.+.+++.+|+++|||||+|.+.++|.+|+ .|||..++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----------- 70 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----------- 70 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET-----------
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC-----------
Confidence 478999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CceEEeeccccCCCC
Q 022096 281 NYVLFVSFTYSKPSC 295 (302)
Q Consensus 281 g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 71 g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 71 SRFLKCGYSSNSDIS 85 (96)
T ss_dssp TEECEEEECSCSSGG
T ss_pred CeEEEEEEcCCCCCC
Confidence 899999999887653
No 112
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=8.3e-19 Score=132.80 Aligned_cols=86 Identities=30% Similarity=0.450 Sum_probs=80.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+|+ .|||..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 93 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG--------- 93 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 44589999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 94 --g~~l~V~~a~~~~~~~ 109 (115)
T 2cpz_A 94 --MKRLKVQLKRSKNDSK 109 (115)
T ss_dssp --TEECEEECCCCSCCCC
T ss_pred --CEEEEEEEcCCCCcCC
Confidence 8999999998876644
No 113
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-19 Score=126.85 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=73.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
++|||+|||+++++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|++|++.++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999998888 9999999999986
No 114
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.4e-19 Score=132.16 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34899999999999999999999999999999999998999999999999999999999999999999999999999874
No 115
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=132.96 Aligned_cols=81 Identities=23% Similarity=0.487 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNP-ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~-~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
...++|||+|||+++++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+ .|+|..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3458999999999999999999999999 9999999998 68999999999999999999999 9999999999999999
Q ss_pred cccC
Q 022096 176 SIDM 179 (302)
Q Consensus 176 a~~~ 179 (302)
+..+
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8654
No 116
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=7.7e-19 Score=140.29 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=80.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|++|++.||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 76544
No 117
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=127.35 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=76.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 83 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD--------- 83 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 44589999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCceEEeecccc
Q 022096 279 PFNYVLFVSFTYS 291 (302)
Q Consensus 279 ~~g~~l~v~~a~~ 291 (302)
|+.|.|.|+.+
T Consensus 84 --g~~l~v~~a~~ 94 (95)
T 2cqc_A 84 --GRRIRVSGPSS 94 (95)
T ss_dssp --TEEEEEECCSC
T ss_pred --CEEEEEEecCC
Confidence 89999999864
No 118
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=129.77 Aligned_cols=84 Identities=25% Similarity=0.416 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|++|++ ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3455899999999999999999999999999999999999999999999999999999999996 57789999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 976544
No 119
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.4e-18 Score=128.82 Aligned_cols=86 Identities=22% Similarity=0.407 Sum_probs=80.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++|| |.+|.|++++.+|+++|||||+|.+.++|.+|+.|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~---------- 81 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLG---------- 81 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEET----------
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeEC----------
Confidence 4568999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred CCceEEeeccccCCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+..+.....
T Consensus 82 -g~~l~V~~a~~~~~~~~ 98 (103)
T 2dng_A 82 -DRSLRVDIAEGRKQDKS 98 (103)
T ss_dssp -TEECEEEECCCCCCCCS
T ss_pred -CeEEEEEEecCCCCCCC
Confidence 89999999988776543
No 120
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=126.49 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++| .|..|+++++ .+|+++|||||+|.+.++|.+|++ +||..|.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 345899999999999999999999999 9999999999 889999999999999999999998 9999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
..+
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 765
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-19 Score=136.08 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|..|+|++++.++.++|||||+|.+.++|++|++. ++..|.|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 48999999999999999999999999999999999999999999999999999999999966 99999999999999976
Q ss_pred Ccc
Q 022096 179 MNS 181 (302)
Q Consensus 179 ~~~ 181 (302)
+..
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 644
No 122
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=129.71 Aligned_cols=86 Identities=26% Similarity=0.501 Sum_probs=80.4
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
..++|||+|||+.+++++|+++|++||.|..+ +|++++.+|.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 74 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC--------- 74 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 45899999999999999999999999999999 99999889999999999999999999999 79999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++...+.
T Consensus 75 --g~~l~v~~a~~~~~~~~ 91 (96)
T 1x5t_A 75 --NRPITVSYAFKKDSKGS 91 (96)
T ss_dssp --TEECEEEESCCCCCCCC
T ss_pred --CEEEEEEEecccCCCCC
Confidence 89999999988776543
No 123
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=130.33 Aligned_cols=83 Identities=29% Similarity=0.507 Sum_probs=78.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~--------- 94 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA--------- 94 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 45689999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|+++.++.
T Consensus 95 --g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 95 --GRPMKVGHVTERT 107 (108)
T ss_dssp --SSCCEEECSCSSC
T ss_pred --CEEEEEEEcccCC
Confidence 8999999998764
No 124
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.5e-19 Score=130.66 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=80.8
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|..|.|.+++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-------- 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD-------- 81 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT--------
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC--------
Confidence 345689999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+....
T Consensus 82 ---g~~l~V~~a~~~~~~~ 97 (103)
T 2dnm_A 82 ---GRELRVQVARYGRRDL 97 (103)
T ss_dssp ---TBCCEEEECSSCCSCC
T ss_pred ---CcEEEEEECCcCCCCC
Confidence 8999999998776543
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=7e-19 Score=128.63 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC--cCCceEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD--VGGREMRV 173 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~--~~g~~l~v 173 (302)
..+.++|||+|||+++|+++|+++|++||.|.+|++++ .||||||+|.+.++|.+|++.|++.. +.||.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34558999999999999999999999999999999985 46899999999999999999999886 78999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
.++..+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 126
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.7e-19 Score=132.11 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CCcCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG--SDVGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~--~~~~g~~l~v~ 174 (302)
...++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|++|++.|++ ..|.||.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 34589999999999999999999999999999999875 68999999999999999988864 68999999999
Q ss_pred EcccCccc
Q 022096 175 FSIDMNSR 182 (302)
Q Consensus 175 ~a~~~~~~ 182 (302)
++..+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99765443
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=2.3e-18 Score=132.09 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+++.++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97543
No 128
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=132.41 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCcCCceEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVS-RNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRV 173 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v 173 (302)
..++|||+|||+++++++|+++|++||. |..|.++ .++.+|.++|||||+|.+.++|.+|++.|+ +..+.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4589999999999999999999999998 9999998 888889999999999999999999999896 58999999999
Q ss_pred EEcccCcc
Q 022096 174 RFSIDMNS 181 (302)
Q Consensus 174 ~~a~~~~~ 181 (302)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99976544
No 129
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.78 E-value=2.2e-18 Score=144.55 Aligned_cols=130 Identities=22% Similarity=0.345 Sum_probs=106.1
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCC---------CCCCCCCEEEEcCCCCCCCHHHHHHhhc
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEP---------RSRARPCELYVCNLPRSFDISELLEMFK 121 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~v~nLp~~~t~~~l~~~f~ 121 (302)
..++++++.+...+++..+.+.+++....+............. ......++|||+|||+++++++|+++|+
T Consensus 68 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~ 147 (216)
T 2qfj_A 68 KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE 147 (216)
T ss_dssp CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT
T ss_pred ccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh
Confidence 4688999888888888888887888766554433221111110 0123458999999999999999999999
Q ss_pred CCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCc
Q 022096 122 PFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (302)
Q Consensus 122 ~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 180 (302)
+||.|..|++++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++....
T Consensus 148 ~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 148 AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999997654
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=129.22 Aligned_cols=87 Identities=26% Similarity=0.492 Sum_probs=81.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 80 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD--------- 80 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 44589999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+..+...+.
T Consensus 81 --g~~l~v~~a~~~~~~~~ 97 (102)
T 1x5s_A 81 --GRQIRVDQAGKSSDNRS 97 (102)
T ss_dssp --SCCCEEEEEECCCCCCC
T ss_pred --CeEEEEEECCCCCCCCC
Confidence 89999999988876544
No 131
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=131.56 Aligned_cols=88 Identities=25% Similarity=0.429 Sum_probs=80.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|+ .||+ .+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--------- 84 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--------- 84 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---------
Confidence 45689999999999999999999999999999999999999999999999999999999999 8898 788
Q ss_pred CCCceEEeeccccCCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTFG 299 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~~ 299 (302)
|+.|.|.|+..+..++..+
T Consensus 85 --g~~l~V~~a~~~~~~~~~~ 103 (116)
T 2cqd_A 85 --GRKANVNLAYLGAKPRSLQ 103 (116)
T ss_dssp --TEECEEEESTTTCCCCCCC
T ss_pred --CEEEEEEEcccCCCccccC
Confidence 8999999998876665543
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.7e-18 Score=130.11 Aligned_cols=87 Identities=17% Similarity=0.304 Sum_probs=81.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC------Ccccccee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN------GTVESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~------g~~~~~~~ 272 (302)
...++|||+|||+.+++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|+ .|| |..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~--- 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD--- 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc---
Confidence 45689999999999999999999999999999999999999999999999999999999999 899 99998
Q ss_pred eeccccCCCceEEeeccccCCCCCC
Q 022096 273 AFQPLFPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 90 --------g~~l~v~~a~~~~~~~~ 106 (111)
T 1x4h_A 90 --------GRQLKVDLAVTRDEAAS 106 (111)
T ss_dssp --------SCEEEEECCCCCCCCCC
T ss_pred --------CEEEEEEECCCCccCCC
Confidence 89999999998876554
No 133
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=8.7e-20 Score=131.99 Aligned_cols=80 Identities=31% Similarity=0.467 Sum_probs=74.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999764
Q ss_pred c
Q 022096 180 N 180 (302)
Q Consensus 180 ~ 180 (302)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 134
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=127.68 Aligned_cols=80 Identities=21% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
...++|||+|||+.+++++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~- 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC-
Confidence 44589999999999999999999999999999 999999999999999999999999999999 89999999
Q ss_pred eeeeccccCCCceEEeeccc
Q 022096 271 TVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~~a~ 290 (302)
|+.|.|.+|+
T Consensus 90 ----------g~~l~V~~A~ 99 (99)
T 2la6_A 90 ----------GNPIKVSFAT 99 (99)
T ss_dssp ----------SSBCEEEECC
T ss_pred ----------CcEEEEEecC
Confidence 8999999874
No 135
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=7.3e-19 Score=125.62 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 75 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--------- 75 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 34589999999999999999999999999999999999889999999999999999999999 99999999
Q ss_pred CCCceEEeeccc
Q 022096 279 PFNYVLFVSFTY 290 (302)
Q Consensus 279 ~~g~~l~v~~a~ 290 (302)
|+.|.|+|+.
T Consensus 76 --g~~l~v~~ak 85 (85)
T 3mdf_A 76 --GRTIRVNLAK 85 (85)
T ss_dssp --TEECEEEECC
T ss_pred --CcEEEEEEcC
Confidence 8999999874
No 136
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.4e-19 Score=129.81 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=80.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 80 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF--------- 80 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 45589999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 81 --g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 81 --GRTIRVNLAKPMRIKE 96 (102)
T ss_dssp --TEEEEEEECCCCCCCC
T ss_pred --CcEEEEEeCCCCCCCC
Confidence 8999999998877654
No 137
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.78 E-value=1e-18 Score=141.26 Aligned_cols=123 Identities=18% Similarity=0.312 Sum_probs=101.0
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++++++.....+++..+. .+++....+......... ........++|||+|||+++++++|+++|++||.|..|.
T Consensus 49 ~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~--~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 125 (172)
T 2g4b_A 49 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPH--DYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFN 125 (172)
T ss_dssp TTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCS--SCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEE
T ss_pred CCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCc--ccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEE
Confidence 34799997777777777776 777766544433222111 112233468999999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
+++++.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+|
T Consensus 126 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 126 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp EEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 9999889999999999999999999999999999999999999987
No 138
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=2.6e-20 Score=172.20 Aligned_cols=84 Identities=14% Similarity=0.368 Sum_probs=79.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|.++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~--------- 170 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID--------- 170 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---------
Confidence 44579999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+..+..
T Consensus 171 --gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 171 --GRRVLVDVERGRTV 184 (437)
T ss_pred --CEEEEEEEeCCCCC
Confidence 89999999987654
No 139
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=129.09 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=74.4
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 98 RPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
..++|||+|||+++++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|++|++.|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34799999999999999999 99999999999999998665 899999999999999999999999999999999
Q ss_pred EEcccCc
Q 022096 174 RFSIDMN 180 (302)
Q Consensus 174 ~~a~~~~ 180 (302)
.++....
T Consensus 85 ~~a~~~~ 91 (96)
T 2dgx_A 85 SLATGAS 91 (96)
T ss_dssp EECCCSS
T ss_pred EEcCCCC
Confidence 9996543
No 140
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=9.7e-19 Score=128.50 Aligned_cols=86 Identities=20% Similarity=0.361 Sum_probs=79.3
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCC---CCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRK---GQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~---~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
..++|||+|||+.+++++|+++|++||.|..|.|.+++. +++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~------- 76 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD------- 76 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET-------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC-------
Confidence 458999999999999999999999999999999999876 6699999999999999999999 89999999
Q ss_pred ccCCCceEEeeccccCCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+..+.....
T Consensus 77 ----g~~l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 77 ----GHKLEVRISERATKPAS 93 (98)
T ss_dssp ----TEECEEECSSCSSCCCC
T ss_pred ----CeEEEEEEccCCCCCCC
Confidence 89999999988776543
No 141
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=126.84 Aligned_cols=80 Identities=15% Similarity=0.267 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCCcCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL--DGSDVGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l--~~~~~~g~~l~v~ 174 (302)
.+.++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45589999999999999999999999999999998864 789999999999999999876 4677999999999
Q ss_pred EcccCccc
Q 022096 175 FSIDMNSR 182 (302)
Q Consensus 175 ~a~~~~~~ 182 (302)
++..+...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2cq1_A 87 YSNHKELK 94 (101)
T ss_dssp ECSCSSCC
T ss_pred EcCcccCc
Confidence 99765443
No 142
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=6.8e-19 Score=132.47 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HhhcCCCCeeEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHHHhCCCCcCCce
Q 022096 97 ARPCELYVCNLPRSFDISELL---EMFKPFGTVLSVEVSRNPETG---ISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~v~~v~i~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (302)
...++|||+|||+++++++|+ ++|++||.|..|.|++++.++ +++|||||+|.+.++|++|++.|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345899999999999999999 999999999999999887654 56699999999999999999999999999999
Q ss_pred EEEEEcccCc
Q 022096 171 MRVRFSIDMN 180 (302)
Q Consensus 171 l~v~~a~~~~ 180 (302)
|.|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999997654
No 143
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=131.17 Aligned_cols=81 Identities=22% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc-
Q 022096 97 ARPCELYVCNLPRSF------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR- 169 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~- 169 (302)
...++|||+|||+.+ ++++|+++|++||.|..|.|+ +.+|+++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 345899999999999 789999999999999999998 37799999999999999999999999999999999
Q ss_pred eEEEEEcccC
Q 022096 170 EMRVRFSIDM 179 (302)
Q Consensus 170 ~l~v~~a~~~ 179 (302)
.|.|.++.+.
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998654
No 144
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=130.04 Aligned_cols=90 Identities=17% Similarity=0.260 Sum_probs=80.6
Q ss_pred CCCceEEEccCCCCCCHHHHH---HhhccCCCeEEEEEEecCCCC---CcceEEEEEeCCHHHHHHHH-HhCCcccccee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLR---NHFGRFGTVVSARVLHDRKGQ---TTRVFGFISFSSDAERDAAL-SLNGTVESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~---~~f~~~G~i~~v~i~~~~~~g---~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~ 272 (302)
...++|||+|||+.+++++|+ ++|++||.|.+|.|.+++.++ +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~--- 89 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD--- 89 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---
Confidence 345899999999999999999 999999999999999987654 56699999999999999999 89999999
Q ss_pred eeccccCCCceEEeeccccCCCCCCCCCC
Q 022096 273 AFQPLFPFNYVLFVSFTYSKPSCRTFGVG 301 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~k~~~~~~~~~ 301 (302)
|+.|.|+|+.++. +..||..
T Consensus 90 --------gr~l~V~~a~~k~-~~~~~~s 109 (111)
T 2cpi_A 90 --------GRTLKASLGTTKY-CSYSGPS 109 (111)
T ss_dssp --------TEEEEEESCCCCS-CSSTTTC
T ss_pred --------CEEEEEEeccccc-ccccCCC
Confidence 8999999999987 5556653
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=128.84 Aligned_cols=81 Identities=19% Similarity=0.234 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLS-VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~-v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
...++|||+|||+++++++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|++|++. ++..|.||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 34589999999999999999999999999987 889888 7899999999999999999999966 99999999999999
Q ss_pred cccC
Q 022096 176 SIDM 179 (302)
Q Consensus 176 a~~~ 179 (302)
+..+
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8654
No 146
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=2.8e-18 Score=127.68 Aligned_cols=85 Identities=28% Similarity=0.422 Sum_probs=78.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|++++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------- 82 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTM--------- 82 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCC---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccC---------
Confidence 446899999999999999999999999999999999998 7999999999999999999999 89999988
Q ss_pred CCC---ceEEeeccccCCCCC
Q 022096 279 PFN---YVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g---~~l~v~~a~~k~~~~ 296 (302)
+ +.|.|.|+..+....
T Consensus 83 --gg~~~~l~V~~a~~~~~~~ 101 (105)
T 2dnh_A 83 --PGASSSLVVKFADTDKESG 101 (105)
T ss_dssp --TTCSSCCEEEESCSSCCCS
T ss_pred --CCCCccEEEEECccCcccC
Confidence 5 999999998877543
No 147
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=1.1e-18 Score=131.02 Aligned_cols=85 Identities=15% Similarity=0.305 Sum_probs=79.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------- 94 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM--------- 94 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 45589999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 95 --g~~l~V~~a~~~~~~ 109 (110)
T 1oo0_B 95 --GQTIQVDWCFVKGPK 109 (110)
T ss_dssp --TEECEEEESEESSCC
T ss_pred --CcEEEEEEcccCCCC
Confidence 899999999887653
No 148
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=130.05 Aligned_cols=83 Identities=20% Similarity=0.444 Sum_probs=75.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|+|..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+.....
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 976543
No 149
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=129.13 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|++||.+ .|+|++++ +++++|||||+|.+.++|++|| .+|+..|.||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEEC
Confidence 345899999999999999999999999954 99999997 8999999999999999999999 68999999999999988
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 150
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=126.15 Aligned_cols=80 Identities=23% Similarity=0.414 Sum_probs=76.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 84 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF--------- 84 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---------
Confidence 44589999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred CCCceEEeeccc
Q 022096 279 PFNYVLFVSFTY 290 (302)
Q Consensus 279 ~~g~~l~v~~a~ 290 (302)
|+.|.|+||+
T Consensus 85 --g~~l~v~~ak 94 (94)
T 2e5h_A 85 --GRVIKASIAI 94 (94)
T ss_dssp --TEEEEEEECC
T ss_pred --CcEEEEEecC
Confidence 8999999974
No 151
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=126.89 Aligned_cols=84 Identities=35% Similarity=0.572 Sum_probs=78.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 81 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA--------- 81 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 45689999999999999999999999999999999998 8999999999999999999999 89999998
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 82 --g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 82 --TKPLYVALAQRKEERQ 97 (103)
T ss_dssp --SSBCEEEECSSCCCCC
T ss_pred --CcEEEEEEecccccCC
Confidence 8999999998877644
No 152
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-19 Score=134.54 Aligned_cols=87 Identities=21% Similarity=0.289 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999985433322223688999999999999999999999999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9766543
No 153
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=128.55 Aligned_cols=86 Identities=21% Similarity=0.403 Sum_probs=80.0
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEec-CCCCCcceEEEEEeCCHHHHHHHH-Hh-CCccccceeeec
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHD-RKGQTTRVFGFISFSSDAERDAAL-SL-NGTVESHTVAFQ 275 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~-~~~g~~~G~afV~f~~~~~A~~Al-~l-~g~~~~~~~~~~ 275 (302)
....++|||+|||+.+++++|+++|++||.|..|.|+++ +.+++++|||||+|.+.++|.+|+ .| ||..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~------ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY------ 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS------
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC------
Confidence 345689999999999999999999999999999999999 789999999999999999999999 89 999999
Q ss_pred cccCCCceEEeeccccCCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 86 -----g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 86 -----GRRLVLEWADSEVTV 100 (107)
T ss_dssp -----SCBCEEEECCCCCCC
T ss_pred -----CCEEEEEeCCCCCCC
Confidence 899999999887653
No 154
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=1.9e-19 Score=132.89 Aligned_cols=81 Identities=20% Similarity=0.200 Sum_probs=76.8
Q ss_pred CceEEEccCCC------CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 202 PHKLYVGNLSW------AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 202 ~~~l~v~nlp~------~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
.++|||+|||+ .+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----- 80 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD----- 80 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS-----
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC-----
Confidence 47899999999 9999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCCC-ceEEeeccccCC
Q 022096 275 QPLFPFN-YVLFVSFTYSKP 293 (302)
Q Consensus 275 ~~~~~~g-~~l~v~~a~~k~ 293 (302)
| +.|.|+++.++.
T Consensus 81 ------g~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 81 ------LKHRLFLYTMKDVE 94 (100)
T ss_dssp ------SSCBCEEEESHHHH
T ss_pred ------CCeEEEEEECchhh
Confidence 7 999999987653
No 155
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=8.8e-19 Score=134.46 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
++|||+|||+++++++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++...
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 89999999999999999999999999999999999999999999999999999999999 89999999999999998754
Q ss_pred c
Q 022096 180 N 180 (302)
Q Consensus 180 ~ 180 (302)
.
T Consensus 116 ~ 116 (124)
T 2jwn_A 116 M 116 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=130.45 Aligned_cols=89 Identities=21% Similarity=0.257 Sum_probs=82.0
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeE--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--------SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~--------~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
....++|||+|||+.+++++|+++|++||.|. .|+|+.++.+|+++|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999999 6999999889999999999999999999999 89999999
Q ss_pred ceeeeccccCCCceEEeeccccCCCCCCC
Q 022096 270 HTVAFQPLFPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 270 ~~~~~~~~~~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.++..+......
T Consensus 92 -----------g~~l~V~~a~~~~~~~~~ 109 (113)
T 2cpe_A 92 -----------GSKLKVSLARKKPPMNSG 109 (113)
T ss_dssp -----------TEECEEECSSCCCCSTTC
T ss_pred -----------CCEEEEEECCCCCCCCCC
Confidence 899999999988765543
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.77 E-value=2.1e-19 Score=150.93 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=102.8
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++|+++.+...+++..+.+.+++....+...................++|||+|||+++|+++|+++|++||.|..|
T Consensus 54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~ 133 (213)
T 4f02_A 54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 133 (213)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred CCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEE
Confidence 34678999888888888888888877665544332221111111222235789999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCc
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 180 (302)
+|+++. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++..+.
T Consensus 134 ~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 134 KVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred EeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 999874 4589999999999999999999999999999999999997643
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.77 E-value=1.8e-18 Score=143.12 Aligned_cols=129 Identities=17% Similarity=0.256 Sum_probs=102.1
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCc------------------cCCCCCCCCCEEEEcCCCCCCC
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSV------------------EEPRSRARPCELYVCNLPRSFD 112 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~v~nLp~~~t 112 (302)
..++|+++.+...+++..+. .+++....+.......... .........++|||+|||++++
T Consensus 49 ~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 127 (198)
T 2yh0_A 49 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLN 127 (198)
T ss_dssp TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCC
T ss_pred CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCC
Confidence 45799998777777777776 6666543332211110000 0111124568999999999999
Q ss_pred HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCc
Q 022096 113 ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMN 180 (302)
Q Consensus 113 ~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~ 180 (302)
+++|+++|++||.|..|++++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.++.
T Consensus 128 ~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 128 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999998899999999999999999999999999999999999999997653
No 159
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=130.71 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCcCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~v~ 174 (302)
.+.++|||+|||+++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.++ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 34589999999999999999999999999999999875 7999999999999999999887 468999999999
Q ss_pred EcccCcccc
Q 022096 175 FSIDMNSRT 183 (302)
Q Consensus 175 ~a~~~~~~~ 183 (302)
++..+....
T Consensus 103 ~a~~k~~~~ 111 (119)
T 2ad9_A 103 FSNHKELKT 111 (119)
T ss_dssp ECSSSSCCC
T ss_pred EccCCCCCc
Confidence 997655443
No 160
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.77 E-value=1.6e-18 Score=131.31 Aligned_cols=79 Identities=23% Similarity=0.518 Sum_probs=73.2
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
..+|||+|||+++++++|+++|++||.|.+|+|++++ +.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----------- 71 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN----------- 71 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEET-----------
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEEC-----------
Confidence 3689999999999999999999999999999999985 458999999999999999999 99999999
Q ss_pred CceEEeeccccCC
Q 022096 281 NYVLFVSFTYSKP 293 (302)
Q Consensus 281 g~~l~v~~a~~k~ 293 (302)
|+.|.|.++.++.
T Consensus 72 g~~i~V~~a~~~~ 84 (115)
T 4f25_A 72 DRKVFVGRFKSRK 84 (115)
T ss_dssp TEECEEEESSCCC
T ss_pred CEEEEEEECCCcc
Confidence 8999999987654
No 161
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.5e-18 Score=139.87 Aligned_cols=87 Identities=20% Similarity=0.362 Sum_probs=80.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+.+++++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccc
Q 022096 176 SIDMNSR 182 (302)
Q Consensus 176 a~~~~~~ 182 (302)
+..+...
T Consensus 149 a~~~~~~ 155 (165)
T 1rk8_A 149 CFVKGPK 155 (165)
T ss_dssp SEECC--
T ss_pred ecCCCCC
Confidence 9766543
No 162
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=130.65 Aligned_cols=85 Identities=25% Similarity=0.441 Sum_probs=79.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|..++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~--------- 74 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLH--------- 74 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 445899999999999999999999999999999999998 8999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+....
T Consensus 75 --g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 75 --GKAIKVEQAKKPSFQS 90 (116)
T ss_dssp --SSBCEEEECCCSSCSS
T ss_pred --CEEEEEEECCCCCCCC
Confidence 8999999998776543
No 163
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.77 E-value=2.4e-18 Score=123.50 Aligned_cols=79 Identities=30% Similarity=0.500 Sum_probs=74.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+.++|..+.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~---------- 78 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLD---------- 78 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEET----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEEC----------
Confidence 4458999999999999999999999999999999999999999999999999999999999977888888
Q ss_pred CCceEEeecc
Q 022096 280 FNYVLFVSFT 289 (302)
Q Consensus 280 ~g~~l~v~~a 289 (302)
|+.|.|.+|
T Consensus 79 -g~~i~v~~A 87 (87)
T 3s7r_A 79 -GRVIDPKKA 87 (87)
T ss_dssp -TEEEEEEEC
T ss_pred -CEEEEEEeC
Confidence 889998875
No 164
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=5.2e-19 Score=124.93 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.|||..+.||+|+|.+|
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 36899999999999999999999999999999965 6899999999999999999999999999999999988
No 165
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=130.65 Aligned_cols=81 Identities=33% Similarity=0.500 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||.++++++|+++|++||.|..|++++++ +.++|||||+|.+.++|++|++.|+|..+.|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345899999999999999999999999999999999874 458999999999999999999999999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=134.08 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|++||+ +||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 345899999999999999999999999999987777777899999999999999999999997 9999999999999998
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6543
No 167
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=127.94 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=79.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhcc-CCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc-ccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGR-FGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV-ESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~-~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~-~~~~~~~~~ 276 (302)
...++|||+|||+.+++++|+++|++ ||.|.+|.|++++ +|+++|||||+|.+.++|.+|+ .|||.. +.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~------- 78 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG------- 78 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS-------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC-------
Confidence 44589999999999999999999999 9999999999998 9999999999999999999999 899999 88
Q ss_pred ccCCCceEEeeccccCCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 79 ----g~~l~v~~a~~~~~~~~ 95 (104)
T 2dhg_A 79 ----SKPVRLSVAIPKASRVK 95 (104)
T ss_dssp ----SSCCCCCBCCCCCSCCC
T ss_pred ----CEeEEEEEccCCCcCCC
Confidence 89999999987766543
No 168
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=127.45 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=77.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeE-EEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV-SARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~-~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
...++|||+|||+.+++++|+++|++||.|. +|+|++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-------- 78 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP-------- 78 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES--------
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC--------
Confidence 3458999999999999999999999999999 9999999999999999999999999999999 89999999
Q ss_pred cCCCce----EEeeccccCCC
Q 022096 278 FPFNYV----LFVSFTYSKPS 294 (302)
Q Consensus 278 ~~~g~~----l~v~~a~~k~~ 294 (302)
|+. |.|+|+.....
T Consensus 79 ---g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 79 ---GATPAKRFKLNYATYSGP 96 (99)
T ss_dssp ---SCSSCEECCEEETTCCSS
T ss_pred ---CCCcceeEEEeecCCCCC
Confidence 677 99999877654
No 169
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=127.51 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=79.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG-QTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++|| |.+|.|++++.+ |+++|||||+|.+.++|.+|+.|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~--------- 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG--------- 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEET---------
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeC---------
Confidence 4558999999999999999999999999 999999999887 99999999999999999999999999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 83 --g~~l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 83 --NKRIRVDVADQAQDKD 98 (104)
T ss_dssp --TEECEEEECCCCCCCC
T ss_pred --CcEEEEEEccCCCCCC
Confidence 8999999998887654
No 170
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=4.8e-18 Score=132.96 Aligned_cols=89 Identities=27% Similarity=0.400 Sum_probs=82.6
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|+.||.|.+|.|++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-------- 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL-------- 110 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--------
Confidence 455689999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+..+......
T Consensus 111 ---g~~l~v~~a~~~~~~~~~ 128 (139)
T 1u6f_A 111 ---NKRLKVALAASGHQRPGI 128 (139)
T ss_dssp ---SCEEEEEESSCCCCCCCS
T ss_pred ---CeEEEEEECCCCCCCCCC
Confidence 899999999888765544
No 171
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=127.46 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CcCCceEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS--DVGGREMRV 173 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~v 173 (302)
..+.++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++. .+.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 344589999999999999999999999999999999863 789999999999999999988764 489999999
Q ss_pred EEcccCccc
Q 022096 174 RFSIDMNSR 182 (302)
Q Consensus 174 ~~a~~~~~~ 182 (302)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999765443
No 172
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=2.2e-18 Score=128.45 Aligned_cols=85 Identities=21% Similarity=0.316 Sum_probs=79.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccc---cceeeec
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVE---SHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~---~~~~~~~ 275 (302)
...++|||+|||+.+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+ .|||..+ .
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~------ 84 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM------ 84 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC------
Confidence 44589999999999999999999999999999999999999999999999999999999999 8999987 5
Q ss_pred cccCCCceEEeeccccCCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+..+...
T Consensus 85 -----g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 85 -----NRPIQVKPADSESRG 99 (106)
T ss_dssp -----SSCCEEEECCCCSCC
T ss_pred -----CceEEEEECCccccc
Confidence 899999999887654
No 173
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=135.99 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|++++++.+++++|||||+|.+.++|++|++.|||..|.|+.|+|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999875
No 174
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=2.2e-18 Score=133.17 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=79.3
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|+ .|||..|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~-------- 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD-------- 114 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--------
Confidence 345689999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCC
Q 022096 278 FPFNYVLFVSFTYSKP 293 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+..+.
T Consensus 115 ---g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 115 ---GRRIRVDFSITKR 127 (129)
T ss_dssp ---SSCCEESCCSSSS
T ss_pred ---CEEEEEEEecCCC
Confidence 8999999998765
No 175
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-18 Score=132.11 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
...++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|++ +|+..|.||.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 34589999999999999999999999999 89999999976 9999999999999999999997 9999999999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998643
No 176
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=2.6e-18 Score=123.80 Aligned_cols=80 Identities=24% Similarity=0.420 Sum_probs=76.4
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNY 282 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~ 282 (302)
++|||+|||+.+++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|+.|||..+. |+
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~-----------g~ 75 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFR-----------GR 75 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEET-----------TE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEEC-----------Cc
Confidence 7899999999999999999999999999999999998999999999999999999999999999999 89
Q ss_pred eEEeeccccCC
Q 022096 283 VLFVSFTYSKP 293 (302)
Q Consensus 283 ~l~v~~a~~k~ 293 (302)
.|.|.++.++.
T Consensus 76 ~l~V~~a~~~~ 86 (89)
T 3ucg_A 76 QIKVIPKRTNR 86 (89)
T ss_dssp ECEEEETTTTS
T ss_pred EEEEEEccCCC
Confidence 99999987653
No 177
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.1e-18 Score=138.36 Aligned_cols=122 Identities=28% Similarity=0.315 Sum_probs=92.8
Q ss_pred CcceeEEEeeecchhhhhhhhh-cCCCCCCCCCcCCCCC--------------ccCCCCCCCCCEEEEcCCCCCCCHHHH
Q 022096 52 PAGFRSVLAVVDEEAVVVEDEI-NGKDNVGGNEVDDDSS--------------VEEPRSRARPCELYVCNLPRSFDISEL 116 (302)
Q Consensus 52 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~v~nLp~~~t~~~l 116 (302)
..|+..+.....+++..+.+.+ ++....+ ....+... ..........++|||+|||+++++++|
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l 90 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTEL 90 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHH
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 3455554566666666666666 5544443 21111111 112233445699999999999999999
Q ss_pred HHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 117 LEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 117 ~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.++
T Consensus 91 ~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 91 ERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999999999886 6899999999999999999999999999999999998654
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.76 E-value=4.4e-18 Score=136.92 Aligned_cols=124 Identities=22% Similarity=0.315 Sum_probs=101.6
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++++++.....+++..+.+.+++....+........ .........++|||+|||.++++++|+++|++||.|..+.
T Consensus 43 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~--~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 120 (168)
T 1b7f_A 43 YSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA--RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKN 120 (168)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC--CCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEE
T ss_pred ccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec--CCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEE
Confidence 35689998887777777777777776654433222111 1112234568999999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a 176 (302)
++++..+|.++|||||+|.+.++|.+|++.|||..+.| +.|+|.+|
T Consensus 121 i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 121 ILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 99998899999999999999999999999999999988 99999875
No 179
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.1e-18 Score=135.58 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
..++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|++|++ +|+..|.||.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 4589999999999999999999999999 89999999977 9999999999999999999997 99999999999999
Q ss_pred Eccc
Q 022096 175 FSID 178 (302)
Q Consensus 175 ~a~~ 178 (302)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9854
No 180
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-19 Score=132.36 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTV-LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++|+++|+++|++||.| ..|+|++++ +|+++|||||+|.+.++|++|++. |+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 45899999999999999999999999999 899999997 899999999999999999999965 999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6544
No 181
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.76 E-value=5.6e-19 Score=125.17 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=67.9
Q ss_pred CEEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc-eEE
Q 022096 100 CELYVCNLPRSF------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR-EMR 172 (302)
Q Consensus 100 ~~l~v~nLp~~~------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~l~ 172 (302)
++|||+|||+.+ ++++|+++|++||.|.+|.++ +.+|+++|||||+|.+.++|.+|++.|||..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 789999999999 789999999999999999987 46799999999999999999999999999999999 887
Q ss_pred E
Q 022096 173 V 173 (302)
Q Consensus 173 v 173 (302)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 182
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=128.15 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--CcCCceEEEE
Q 022096 98 RPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS--DVGGREMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~--~~~g~~l~v~ 174 (302)
+.++|||+|||+ ++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .|.||.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 458999999999 9999999999999999999999875 479999999999999999998865 4899999999
Q ss_pred EcccCc
Q 022096 175 FSIDMN 180 (302)
Q Consensus 175 ~a~~~~ 180 (302)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 997543
No 183
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.6e-18 Score=135.73 Aligned_cols=90 Identities=24% Similarity=0.392 Sum_probs=82.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|++++.++.++|||||+|.+.++|.+|+ .|||..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~--------- 107 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD--------- 107 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 34589999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTFGV 300 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~~~ 300 (302)
|+.|.|.|+.++...+.+|-
T Consensus 108 --g~~l~V~~a~~~~~~~~~~~ 127 (156)
T 1h2v_Z 108 --DRIIRTDWDAGFKEGRQYGR 127 (156)
T ss_dssp --TEECEEEEESCCCTTCC---
T ss_pred --CeEEEEEECCCCCCcCCCCC
Confidence 89999999998887776654
No 184
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.1e-18 Score=121.77 Aligned_cols=75 Identities=27% Similarity=0.433 Sum_probs=71.7
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCce
Q 022096 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNYV 283 (302)
Q Consensus 204 ~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~~ 283 (302)
+|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+.|||..++ |+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~-----------g~~ 69 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN-----------NKM 69 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSS-----------SCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEEC-----------CEE
Confidence 489999999999999999999999999999999998999999999999999999999999999999 889
Q ss_pred EEeecc
Q 022096 284 LFVSFT 289 (302)
Q Consensus 284 l~v~~a 289 (302)
|.|.+|
T Consensus 70 l~v~~A 75 (75)
T 2mss_A 70 VECKKA 75 (75)
T ss_dssp CEEECC
T ss_pred EEEEeC
Confidence 998875
No 185
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=135.52 Aligned_cols=84 Identities=20% Similarity=0.279 Sum_probs=78.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEE--EEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCc----ccccee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGT----VESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~--v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~----~~~~~~ 272 (302)
...++|||+|||+.+++++|+++|++||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+ .|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45689999999999999999999999999977 99999999999999999999999 999999 99999 888
Q ss_pred eeccccCCCceEEeeccccCCCC
Q 022096 273 AFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|+|+.++.+.
T Consensus 97 --------gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 --------GKTINVEFAKGSKRD 111 (131)
T ss_dssp --------GCCCCCEECCCSCCC
T ss_pred --------CEEEEEEECCCCCCC
Confidence 899999999877554
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=3.7e-19 Score=124.09 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 101 ELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 101 ~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
+|||+|||+++++++|+++|++||.|..|.+++++.+|.++|||||+|.+.++|++|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999995 6999999999999875
No 187
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=127.92 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=73.7
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~ 280 (302)
..++|||+|||+++++++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|+.+||..+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~----------- 77 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYK----------- 77 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCT-----------
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEEC-----------
Confidence 347899999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred CceEEeecccc
Q 022096 281 NYVLFVSFTYS 291 (302)
Q Consensus 281 g~~l~v~~a~~ 291 (302)
|+.|.|.++..
T Consensus 78 gr~l~V~~~~~ 88 (103)
T 1s79_A 78 ETDLLILFKDD 88 (103)
T ss_dssp TTTCEEEEHHH
T ss_pred CEEEEEEEchH
Confidence 89999987643
No 188
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=126.48 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 345899999999999999999999999987 56666 67999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
..+..
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76543
No 189
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=126.98 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--------- 83 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG--------- 83 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---------
Confidence 44588999999999999999999999999999989999889999999999999999999999 99999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.++..+.
T Consensus 84 --g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 84 --SRKVKLVLGSGPS 96 (98)
T ss_dssp --TEECEEEESSCSS
T ss_pred --CeEEEEEEcCCCC
Confidence 8999999987654
No 190
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=123.44 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=79.8
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
....++|||+|||+.+++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|+. ++..+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--------- 81 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMID--------- 81 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEET---------
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeC---------
Confidence 3456899999999999999999999999999999999999899999999999999999999996 466777
Q ss_pred CCCceEEeeccccCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+.++.....-
T Consensus 82 --g~~l~v~~a~~~~~~~~~ 99 (103)
T 2cqg_A 82 --GRWCDCKLPNSKQSQDSG 99 (103)
T ss_dssp --TEEEEEECCCTTCCCCCS
T ss_pred --CeEEEEEecCCCCcCCCC
Confidence 899999999998876543
No 191
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=124.66 Aligned_cols=80 Identities=29% Similarity=0.376 Sum_probs=75.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|.+++. |+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 83 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLY--------- 83 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 3458999999999999999999999999999999999985 999999999999999999999 89999999
Q ss_pred CCCceEEeecccc
Q 022096 279 PFNYVLFVSFTYS 291 (302)
Q Consensus 279 ~~g~~l~v~~a~~ 291 (302)
|+.|.|.|+.+
T Consensus 84 --g~~l~V~~a~~ 94 (95)
T 2ywk_A 84 --GRPINVSGPSS 94 (95)
T ss_dssp --TEECEEECCCC
T ss_pred --CCEEEEEEcCC
Confidence 89999999864
No 192
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.3e-18 Score=125.04 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=76.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 95 SRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 95 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
.....++|||+|||+++++++|+++|+.|+ .|+++.++.++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344568999999999999999999999884 68888898899999999999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++..+..
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9976544
No 193
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=137.60 Aligned_cols=81 Identities=20% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
..++|||+|||+.+++++|+++|++|| .|.+|+|+.|+.+|+++|||||+|.+.++|.+|+ .|||..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~-------- 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN-------- 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET--------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC--------
Confidence 347999999999999999999999999 9999999999999999999999999999999999 99999999
Q ss_pred cCCCceEEeeccccC
Q 022096 278 FPFNYVLFVSFTYSK 292 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k 292 (302)
|+.|.|.++..+
T Consensus 126 ---Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 126 ---GEKVDVRPATRQ 137 (156)
T ss_dssp ---TEECEEEECCHH
T ss_pred ---CeEeEEEEcCCC
Confidence 899999998654
No 194
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=125.84 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=79.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|+.++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 82 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLF--------- 82 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 445899999999999999999999999999999999997 5999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+........+
T Consensus 83 --g~~l~v~~a~~~~~~~~~ 100 (114)
T 2do0_A 83 --DRPMHVKMDERALPKGDF 100 (114)
T ss_dssp --TEECEEEECSCCCCCSCC
T ss_pred --CCEEEEEEcccCCCCCCC
Confidence 899999999765554443
No 195
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=127.14 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCCcCCceEE
Q 022096 96 RARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD--GSDVGGREMR 172 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~l~ 172 (302)
....++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345689999999998 99999999999999999999974 47899999999999999999886 4569999999
Q ss_pred EEEcccCcc
Q 022096 173 VRFSIDMNS 181 (302)
Q Consensus 173 v~~a~~~~~ 181 (302)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999976543
No 196
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=127.12 Aligned_cols=88 Identities=23% Similarity=0.393 Sum_probs=80.7
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
....++|||+|||+.+++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|.+|+..||..|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~--------- 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLD--------- 83 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEET---------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeEC---------
Confidence 35568999999999999999999999999999999999999999999999999999999999944999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.++.++.....
T Consensus 84 --g~~l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 84 --GRNIDPKPCTPRGMQPS 100 (105)
T ss_dssp --TEEEBCCCSCCSSCCTT
T ss_pred --CEEEEEEEccCCCCCCC
Confidence 89999999988876543
No 197
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.1e-18 Score=122.10 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=77.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++| .|.+|+|+++ .+|+++|||||+|.+.++|.+|+.|||..++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~---------- 75 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMG---------- 75 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEET----------
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeC----------
Confidence 345899999999999999999999999 9999999999 6899999999999999999999999999999
Q ss_pred CCceEEeeccccCCCC
Q 022096 280 FNYVLFVSFTYSKPSC 295 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.++.+++.+
T Consensus 76 -gr~i~v~~a~~~~~s 90 (91)
T 2dgw_A 76 -GRYIEVFREKSGPSS 90 (91)
T ss_dssp -TEEEEEEEESSCCCC
T ss_pred -CcEEEEEECCcCCCC
Confidence 899999999888654
No 198
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=124.56 Aligned_cols=79 Identities=25% Similarity=0.507 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 345589999999999999999999999999999999854 68999999999999999999999999999999999
Q ss_pred cccCc
Q 022096 176 SIDMN 180 (302)
Q Consensus 176 a~~~~ 180 (302)
+..+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 97654
No 199
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=127.71 Aligned_cols=85 Identities=28% Similarity=0.509 Sum_probs=76.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++||.|.+|+|++++.+|+++|||||+|.+.++|.+|+..+|..++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~---------- 92 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD---------- 92 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEET----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCC----------
Confidence 4458999999999999999999999999999999999999999999999999999999999954568888
Q ss_pred CCceEEeeccccCCCC
Q 022096 280 FNYVLFVSFTYSKPSC 295 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.++.++...
T Consensus 93 -g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 93 -SKTIDPKVAFPRRAQ 107 (109)
T ss_dssp -TEEEEEEECCCCCCC
T ss_pred -CEEEEEEEccCCCCC
Confidence 899999999887654
No 200
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=127.56 Aligned_cols=82 Identities=28% Similarity=0.460 Sum_probs=78.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+.+++++|+++|++||.|..|.+++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----------- 76 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----------- 76 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS-----------
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC-----------
Confidence 378999999999999999999999999999999999989999999999999999999999 89999998
Q ss_pred CceEEeeccccCCC
Q 022096 281 NYVLFVSFTYSKPS 294 (302)
Q Consensus 281 g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+.++..
T Consensus 77 g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 77 GRALRVDNAASEKN 90 (104)
T ss_dssp SSCBEEEETTCTTH
T ss_pred CcEEEEEeCCCccc
Confidence 89999999987654
No 201
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-18 Score=124.45 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=73.7
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++||.|.+|.++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---------- 73 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---------- 73 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----------
Confidence 4589999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCceEEeeccc
Q 022096 280 FNYVLFVSFTY 290 (302)
Q Consensus 280 ~g~~l~v~~a~ 290 (302)
|+.|+++++.
T Consensus 74 -g~~~~~~~~~ 83 (85)
T 1x4e_A 74 -AQMAKQSGPS 83 (85)
T ss_dssp -EESCCSSCCC
T ss_pred -eEEEeecCCC
Confidence 7777777654
No 202
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=128.25 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDR-KGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~-~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++|| |.+|+|++++ .+|+++|||||+|.+.++|.+|+.|||..+.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~--------- 86 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG--------- 86 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBT---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEEC---------
Confidence 4458999999999999999999999999 9999999998 6899999999999999999999999999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.++.++.
T Consensus 87 --g~~l~V~~a~~~~ 99 (100)
T 2j76_E 87 --NRRIRVDVADQAQ 99 (100)
T ss_dssp --TBCCCCEECCCSC
T ss_pred --CeEEEEEeccCCC
Confidence 8999999998765
No 203
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=122.24 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|+++ +|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 345899999999999999999999999999999997 579999999999999999999999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 765443
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.75 E-value=2.8e-18 Score=139.24 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=99.4
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++|+++.....+++..+. ++++....+...................++|||+|||+++++++|+++|++||.|..+
T Consensus 51 ~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 51 GTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp ETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred CccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 356789997777777777776 5777666554443333332333344456899999999999999999999999988766
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
..++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.++
T Consensus 130 -----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 -----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp -----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred -----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 467899999999999999999999999999999999999999654
No 205
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=125.72 Aligned_cols=86 Identities=9% Similarity=0.104 Sum_probs=78.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+++++++|+++|++||.+ +|+|++++ +|+++|||||+|.+.++|.+||.+|+..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~---------- 80 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQ---------- 80 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSS----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeEC----------
Confidence 445899999999999999999999999955 99999998 899999999999999999999988999999
Q ss_pred CCceEEeeccccCCCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~~~ 298 (302)
++.|.|..+......+..
T Consensus 81 -gr~i~V~~~~~~~~~~~~ 98 (102)
T 1wez_A 81 -HRYVELFLNSTAGTSGSG 98 (102)
T ss_dssp -SSCCEEEEECCCCCCCCC
T ss_pred -CcEEEEEECCCCCCCCCC
Confidence 899999998887776543
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=6.2e-18 Score=126.22 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|+.++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 96 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD--------- 96 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 456899999999999999999999999999999999998 9999999999999999999999 89999999
Q ss_pred CCCceEEeeccc
Q 022096 279 PFNYVLFVSFTY 290 (302)
Q Consensus 279 ~~g~~l~v~~a~ 290 (302)
|+.|.|+|+.
T Consensus 97 --g~~l~V~~a~ 106 (107)
T 3ulh_A 97 --GRPMNIQLVT 106 (107)
T ss_dssp --TEECEEEEEC
T ss_pred --CcEEEEEEeC
Confidence 8999999975
No 207
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=128.82 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++|+++|+++|++| .|..|+|++++. |+++|||||+|.+.++|++|+ .+|+..|+||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4799999999999999999999999 899999999965 999999999999999999999 7999999999999988854
No 208
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.75 E-value=5.8e-18 Score=135.90 Aligned_cols=124 Identities=23% Similarity=0.417 Sum_probs=100.1
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++++++.....+++..+.+.+++....+......... ........++|||+|||.++++++|+++|++||.|..++
T Consensus 42 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~--~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~ 119 (167)
T 1fxl_A 42 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 119 (167)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE
T ss_pred cceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC--CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEE
Confidence 456899988777777777777787765544332221111 111223458999999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce--EEEEEc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE--MRVRFS 176 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~a 176 (302)
++.+..+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.||
T Consensus 120 i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 120 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 9999889999999999999999999999999999999975 788775
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=124.08 Aligned_cols=86 Identities=24% Similarity=0.394 Sum_probs=77.7
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|.+|.|++++.+ ++|||||+|.+.++|.+|+ .|||..+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~-------- 81 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKIL-------- 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEET--------
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcC--------
Confidence 345689999999999999999999999999999999998543 6899999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+..+.....
T Consensus 82 ---g~~l~V~~a~~~~~~~~ 98 (103)
T 2cqi_A 82 ---GKEVKVNWATTPSSQKS 98 (103)
T ss_dssp ---TEEEEEEECCCTTCCCC
T ss_pred ---CCeEEEEECCCCccccc
Confidence 89999999988765543
No 210
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=7.7e-18 Score=122.13 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.+.++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~--------- 74 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLS--------- 74 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 44589999999999999999999999999999999985 7899999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++..+.
T Consensus 75 --g~~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 75 --GREIDVRIDRNASGPS 90 (92)
T ss_dssp --TBCCCCEECSCCSSCC
T ss_pred --CcEEEEEEcCCCCCCC
Confidence 8999999998876643
No 211
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=7.8e-18 Score=136.30 Aligned_cols=125 Identities=20% Similarity=0.357 Sum_probs=99.7
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcC--CCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVD--DDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLS 128 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~ 128 (302)
..++++++.....+++..+.+.+++....+..... ..............++|||+|||+++|+++|+++|++||.|..
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~ 124 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEE
Confidence 46789998888888888888888876544322111 1111112222335689999999999999999999999999999
Q ss_pred EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC---CceEEEEEc
Q 022096 129 VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG---GREMRVRFS 176 (302)
Q Consensus 129 v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~a 176 (302)
|.++++. +|.++|||||+|.+.++|.+|++.|||..+. |+.|.|.+|
T Consensus 125 v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 125 CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999985 5999999999999999999999999998875 499999987
No 212
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=2.9e-18 Score=130.33 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=75.8
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~-------- 108 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG-------- 108 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC--------
Confidence 345689999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred cCCCceEEeeccc
Q 022096 278 FPFNYVLFVSFTY 290 (302)
Q Consensus 278 ~~~g~~l~v~~a~ 290 (302)
|+.|.|.|++
T Consensus 109 ---g~~l~V~~ak 118 (118)
T 2khc_A 109 ---TKRLKVQLKK 118 (118)
T ss_dssp ---TEECCEEEC-
T ss_pred ---CEEEEEEecC
Confidence 8999999873
No 213
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.2e-18 Score=123.62 Aligned_cols=79 Identities=24% Similarity=0.426 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|. +.++.+ .++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3458999999999999999999999999997 677653 58899999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 214
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=130.92 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
...++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 345899999999999999876 6999999999988754 578999999999999999999999999999999999
Q ss_pred EEEcccCcc
Q 022096 173 VRFSIDMNS 181 (302)
Q Consensus 173 v~~a~~~~~ 181 (302)
|.++..+..
T Consensus 104 V~~a~~~~~ 112 (127)
T 2a3j_A 104 ITFSETPQS 112 (127)
T ss_dssp EEECCCCCH
T ss_pred EEEccCcch
Confidence 999976543
No 215
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=123.21 Aligned_cols=85 Identities=27% Similarity=0.567 Sum_probs=77.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.|++++. .++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 81 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE--------- 81 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 4568999999999999999999999999999999999864 38999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 82 --g~~l~v~~a~~~~~~~~ 98 (103)
T 2cq3_A 82 --GRKIEVNNATARVMTNS 98 (103)
T ss_dssp --TEECEEEECCSSCCCCC
T ss_pred --CEEEEEEEcccCCCCCC
Confidence 89999999988876543
No 216
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=4.6e-18 Score=130.79 Aligned_cols=86 Identities=17% Similarity=0.323 Sum_probs=80.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|||..|.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 90 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM--------- 90 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---------
Confidence 44589999999999999999999999999999999999989999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|+|+..+....
T Consensus 91 --g~~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 91 --GQPISVDWCFVRGPPK 106 (126)
T ss_dssp --SSBCEEEESEESSSCC
T ss_pred --CeEEEEEEecCCCCCC
Confidence 8999999998776654
No 217
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.4e-18 Score=145.87 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=77.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFG--TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
..++|||+|||+++|+++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 347899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 022096 176 SIDM 179 (302)
Q Consensus 176 a~~~ 179 (302)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 218
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=123.61 Aligned_cols=78 Identities=22% Similarity=0.419 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC--CceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG--GREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~--g~~l~v~ 174 (302)
...++|||+|||+++++++|+++|++||.|..|.+.++ +|||||+|.+.++|++|++.|||..+. |+.|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 34589999999999999999999999999999999764 789999999999999999999999999 9999999
Q ss_pred EcccCc
Q 022096 175 FSIDMN 180 (302)
Q Consensus 175 ~a~~~~ 180 (302)
++..+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 997653
No 219
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=122.98 Aligned_cols=81 Identities=16% Similarity=0.336 Sum_probs=75.5
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCC-cceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQT-TRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~-~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
.++|||+|||+.+++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---------- 73 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---------- 73 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----------
Confidence 47899999999999999999999999999999999987766 9999999999999999999 89999999
Q ss_pred CCceEEeeccccCC
Q 022096 280 FNYVLFVSFTYSKP 293 (302)
Q Consensus 280 ~g~~l~v~~a~~k~ 293 (302)
|+.|.|+++.++.
T Consensus 74 -g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 74 -GQEITATAVLAPW 86 (88)
T ss_dssp -TEECEEEEECCCC
T ss_pred -CeEEEEEECCCCC
Confidence 8999999987653
No 220
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=129.59 Aligned_cols=80 Identities=19% Similarity=0.190 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGT---VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~---v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
..++|||+|||+++|+++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|++|++ +|+..++||.|.|.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 4589999999999999999999999998 89999999977 9999999999999999999997 99999999999999
Q ss_pred EcccC
Q 022096 175 FSIDM 179 (302)
Q Consensus 175 ~a~~~ 179 (302)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98653
No 221
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=3.3e-19 Score=131.80 Aligned_cols=81 Identities=22% Similarity=0.305 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999999888 677777889999999999999999999997 99999999999999997
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 222
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=5.7e-18 Score=139.78 Aligned_cols=131 Identities=17% Similarity=0.276 Sum_probs=93.7
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCC----CCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCe
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDD----SSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTV 126 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v 126 (302)
..++|+++.+...+++..+.+. ++....+....... ............++|||+|||+++++++|+++|++||.|
T Consensus 53 ~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i 131 (196)
T 1l3k_A 53 RSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131 (196)
T ss_dssp CEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCE
T ss_pred CccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCe
Confidence 3578999777766666666544 43332222111110 011111222345899999999999999999999999999
Q ss_pred eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccCcccc
Q 022096 127 LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDMNSRT 183 (302)
Q Consensus 127 ~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~~~~~ 183 (302)
..|.+++++.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.++....
T Consensus 132 ~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred EEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 9999999988999999999999999999999954 8999999999999997765443
No 223
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=1.9e-18 Score=129.52 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 458999999999999999999999999 8999988643 48899999999999999999999999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 224
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=127.00 Aligned_cols=87 Identities=29% Similarity=0.435 Sum_probs=80.4
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~ 280 (302)
..++|||+|||+.+++++|+++|++||.|..|.|++++.+|+++|||||+|.+.++|.+|+..||..|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~----------- 94 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSID----------- 94 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEET-----------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEEC-----------
Confidence 348999999999999999999999999999999999999999999999999999999999944999999
Q ss_pred CceEEeeccccCCCCCCC
Q 022096 281 NYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 281 g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.++.++.....-
T Consensus 95 g~~l~V~~a~~~~~~~~~ 112 (116)
T 1x4b_A 95 GRVVEPKRAVAREESGSG 112 (116)
T ss_dssp TEEEEEECCSSCCCCCCS
T ss_pred CEEEEEEECCCCccCCCC
Confidence 899999999988776543
No 225
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=2.6e-18 Score=125.42 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=74.5
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---------- 83 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---------- 83 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----------
Confidence 3489999999999999999999999999999999999889999999999999999999999 89999999
Q ss_pred CCceEEeecccc
Q 022096 280 FNYVLFVSFTYS 291 (302)
Q Consensus 280 ~g~~l~v~~a~~ 291 (302)
|+.|.|.++.+
T Consensus 84 -gr~l~v~~a~s 94 (95)
T 2ek1_A 84 -SRKVKLSGPSS 94 (95)
T ss_dssp -TEECEEECCC-
T ss_pred -CcEEEEEeccC
Confidence 89999998764
No 226
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=123.06 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCceEEEccCCCCCCHHHHH----HhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
...++|||+|||+.+++++|+ ++|++||.|.+|+|++++.+ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~----- 78 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIG----- 78 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEET-----
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEEC-----
Confidence 345899999999999999999 99999999999999999765 899999999999999999 89999999
Q ss_pred ccccCCCceEEeeccccCCC
Q 022096 275 QPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|+++.++..
T Consensus 79 ------gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 79 ------SKKILVSLATGASG 92 (96)
T ss_dssp ------TEEEEEEECCCSSC
T ss_pred ------CeEEEEEEcCCCCC
Confidence 89999999977654
No 227
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=125.11 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCC--ccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG--TVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g--~~~~~~~~~~~ 276 (302)
...++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+ .|++ ..+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~------- 80 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR------- 80 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC-------
Confidence 34589999999999999999999999999999999875 689999999999999999 7864 6788
Q ss_pred ccCCCceEEeeccccCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|+|+..+....
T Consensus 81 ----Gr~l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 81 ----GQPIYIQFSNHKELKT 96 (105)
T ss_dssp ----TEECCBCCCSSSSCCC
T ss_pred ----CEEEEEEEcCCCCCCc
Confidence 8999999998776544
No 228
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=124.94 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC-----ceE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-----REM 171 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-----~~l 171 (302)
...++|||+|||+++++++|+++|++||.|..|.|+.+ |||||+|.+.++|++||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 34589999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEEcccCcc
Q 022096 172 RVRFSIDMNS 181 (302)
Q Consensus 172 ~v~~a~~~~~ 181 (302)
.|.++..+..
T Consensus 86 ~V~~a~~~~~ 95 (108)
T 1x4c_A 86 RVKVDGPRSP 95 (108)
T ss_dssp EEEESSCCSC
T ss_pred EEEeCCCCCC
Confidence 9999987544
No 229
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.2e-18 Score=119.85 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=69.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCCcCCceEEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIAL-DGSDVGGREMRVRF 175 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~ 175 (302)
...++|||+|||.++++++|+++|++||.|..|++++ ++|||||+|.+.++|.+|++.| +|..+.|+.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 4458999999999999999999999999999999986 3789999999999999999888 99999999999998
Q ss_pred cc
Q 022096 176 SI 177 (302)
Q Consensus 176 a~ 177 (302)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 230
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=7.4e-18 Score=126.06 Aligned_cols=77 Identities=26% Similarity=0.418 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|.++ +|||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 345899999999999999999999999999999997 689999999999999999999999999999999998
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
.....
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 76543
No 231
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-19 Score=137.11 Aligned_cols=85 Identities=24% Similarity=0.385 Sum_probs=79.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLS--------VEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR 169 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 169 (302)
+.++|||+|||+++++++|+++|++||.|.. |+++.++.+++++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4489999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred eEEEEEcccCccc
Q 022096 170 EMRVRFSIDMNSR 182 (302)
Q Consensus 170 ~l~v~~a~~~~~~ 182 (302)
.|.|.++..+...
T Consensus 86 ~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 86 PIKVSFATRRADF 98 (116)
Confidence 9999999766544
No 232
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=127.78 Aligned_cols=80 Identities=18% Similarity=0.493 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||.++++++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 34589999999999999999999999999999999875 789999999999999999999999999999999999
Q ss_pred ccCccc
Q 022096 177 IDMNSR 182 (302)
Q Consensus 177 ~~~~~~ 182 (302)
..+...
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 765443
No 233
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.3e-18 Score=125.82 Aligned_cols=82 Identities=26% Similarity=0.498 Sum_probs=72.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
++|||+|||+.+++++|+++|++||.|.+|.+.+++.+|+++|||||+|.+.+ |.+|+ .|||..+. |
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~-----------g 69 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM-----------G 69 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS-----------S
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC-----------C
Confidence 57999999999999999999999999999999999989999999999999999 99999 89999999 8
Q ss_pred ceEEeeccccCCCCC
Q 022096 282 YVLFVSFTYSKPSCR 296 (302)
Q Consensus 282 ~~l~v~~a~~k~~~~ 296 (302)
+.|.|++|..+....
T Consensus 70 ~~l~V~~a~~~~~~~ 84 (90)
T 2ki2_A 70 RTIRVTEANPKKSLE 84 (90)
T ss_dssp SSCSEEEC-------
T ss_pred eEEEEEEcCCCCCCC
Confidence 999999998876654
No 234
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=124.55 Aligned_cols=90 Identities=27% Similarity=0.464 Sum_probs=78.7
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|++++ +|+++|||||+|.+.++|.+|+ .|||..+.++... .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~---~ 98 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV---S 98 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS---C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc---c
Confidence 455899999999999999999999999999999999998 8999999999999999999999 8999999643211 1
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
..++.|.|.|+.++.
T Consensus 99 ~~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 99 APTEPLLCKFSGPSS 113 (114)
T ss_dssp CCSSCBEEEECCCSC
T ss_pred CCCCceeEEccCCCC
Confidence 138899999998653
No 235
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.8e-18 Score=125.04 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 97 ARPCELYVCNLPRSFDISELL----EMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
...++|||+|||+++++++|+ ++|++||.|..|.+++ +|.++|||||+|.+.++|.+|++.|||..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345899999999999999999 9999999999999874 477899999999999999999999999999999999
Q ss_pred EEEcccCcc
Q 022096 173 VRFSIDMNS 181 (302)
Q Consensus 173 v~~a~~~~~ 181 (302)
|.++.....
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999976543
No 236
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=125.59 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=77.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHH-HhC--Cccccceeeec
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVL-HDRKGQTTRVFGFISFSSDAERDAAL-SLN--GTVESHTVAFQ 275 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~-~~~~~g~~~G~afV~f~~~~~A~~Al-~l~--g~~~~~~~~~~ 275 (302)
..++|||+|||+.+++++|+++|++||. |.+|.++ .++.+|+++|||||+|.+.++|.+|+ .|| +..+.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~------ 80 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW------ 80 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT------
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec------
Confidence 4589999999999999999999999998 9999998 88888999999999999999999999 896 58888
Q ss_pred cccCCCceEEeeccccCCCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 81 -----g~~l~V~~a~~~~~~~ 96 (109)
T 2dis_A 81 -----GHQIAVDWAEPEIDVD 96 (109)
T ss_dssp -----TBCCEEEESCSSCSTT
T ss_pred -----CCeEEEEEcCCCCCcC
Confidence 8999999998877643
No 237
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-18 Score=124.94 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=71.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 345899999999999999999999999988766 356889999999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 238
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=1.9e-18 Score=127.87 Aligned_cols=80 Identities=19% Similarity=0.418 Sum_probs=75.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|++++++ +|.++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34899999999999999999999999999999999997 89999999999999999999996 9999999999999987
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 554
No 239
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=122.19 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=77.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 79 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE--------- 79 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 456899999999999999999999999977 56666 58999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTFGV 300 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~~~ 300 (302)
|+.|.|.|+.++.+.+.-+.
T Consensus 80 --g~~l~v~~a~~~~~~~~~~~ 99 (101)
T 2fc9_A 80 --GRAIRLELQGPRGSPNSGPS 99 (101)
T ss_dssp --TEEEEEEECSSCCCCCCCSS
T ss_pred --CeEEEEEEcCCCCCCCCCCC
Confidence 89999999999988766543
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.3e-17 Score=127.88 Aligned_cols=82 Identities=23% Similarity=0.417 Sum_probs=77.5
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
.++|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+.|||..|. |
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~-----------g 104 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFR-----------G 104 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEET-----------T
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeEC-----------C
Confidence 47999999999999999999999999999999999988999999999999999999999999999999 8
Q ss_pred ceEEeeccccCCC
Q 022096 282 YVLFVSFTYSKPS 294 (302)
Q Consensus 282 ~~l~v~~a~~k~~ 294 (302)
+.|.|.|+.....
T Consensus 105 ~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 105 RTIKVLPKRTNMP 117 (124)
T ss_dssp EECEEEESSCCCS
T ss_pred eEEEEEECCCCCC
Confidence 9999999876544
No 241
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=3.6e-17 Score=125.42 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=79.8
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|.+|.|.+++ +|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-------- 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD-------- 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS--------
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC--------
Confidence 3556899999999999999999999999999999999998 8999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+....
T Consensus 103 ---g~~l~V~~a~~~~~~~ 118 (124)
T 2kt5_A 103 ---GRPMDIQLVASQIDLE 118 (124)
T ss_dssp ---SCEEEEEEECCTTCCC
T ss_pred ---CcEEEEEEeCCCCCCC
Confidence 8999999998776544
No 242
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=122.32 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=70.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 96 RARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 96 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
..+.++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34458999999998 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++.....
T Consensus 79 ~a~~~~~ 85 (96)
T 2kvi_A 79 VSSSNAR 85 (96)
T ss_dssp EEECCCC
T ss_pred EcCcCCC
Confidence 9976543
No 243
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.73 E-value=3.5e-18 Score=137.42 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=95.7
Q ss_pred CCCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 022096 50 SHPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSV 129 (302)
Q Consensus 50 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v 129 (302)
...++|+++.....+++..+... .....+........ .........++|||+|||+++++++|+++|++||.|..+
T Consensus 42 g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~--~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 42 GRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA--IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp SSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC--CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred CCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc--cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 35678999777777776666653 11111111110000 000111235799999999999999999999999999999
Q ss_pred EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcccC
Q 022096 130 EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSIDM 179 (302)
Q Consensus 130 ~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~~ 179 (302)
+++.++.+|.++|||||+|.+.++|.+|++ ++|..+.|+.|.|.++.++
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998899999999999999999999996 9999999999999999754
No 244
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=122.38 Aligned_cols=85 Identities=21% Similarity=0.398 Sum_probs=76.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|..+ ++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 87 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD--------- 87 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 45589999999999999999999999999999999654 558999999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+..+.....-
T Consensus 88 --g~~l~V~~a~~~~~~~~~ 105 (109)
T 1x4a_A 88 --GYRLRVEFPRSGRGTGSG 105 (109)
T ss_dssp --TEECEEECCCCCCCCCCC
T ss_pred --CeEEEEEEcccCCCCCCC
Confidence 899999999988766543
No 245
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-18 Score=128.61 Aligned_cols=81 Identities=19% Similarity=0.385 Sum_probs=77.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
.++|||+|||+.+++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|.+|+.|||..|. |
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~-----------g 93 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLL-----------G 93 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEET-----------T
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeC-----------C
Confidence 47999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ceEEeeccccCC
Q 022096 282 YVLFVSFTYSKP 293 (302)
Q Consensus 282 ~~l~v~~a~~k~ 293 (302)
+.|.|.|+..+.
T Consensus 94 ~~l~V~~a~~~~ 105 (114)
T 2cq4_A 94 VPIIVQASQAEK 105 (114)
T ss_dssp EEEEEEEHHHHH
T ss_pred eEEEEEecCCCc
Confidence 999999987654
No 246
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-18 Score=119.41 Aligned_cols=76 Identities=30% Similarity=0.557 Sum_probs=71.3
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
++|||+|||+.+++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|+ .++ ..+. |
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~-----------g 68 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD-----------S 68 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS-----------S
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC-----------C
Confidence 47999999999999999999999999999999999989999999999999999999999 777 8888 8
Q ss_pred ceEEeeccc
Q 022096 282 YVLFVSFTY 290 (302)
Q Consensus 282 ~~l~v~~a~ 290 (302)
+.|.|.+|.
T Consensus 69 ~~l~v~~a~ 77 (77)
T 1uaw_A 69 KTIDPKVAF 77 (77)
T ss_dssp CCCEEEECC
T ss_pred EEEEEEecC
Confidence 899998863
No 247
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=122.17 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=69.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc--ccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV--ESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~--~~~~~~~~~ 276 (302)
.+.++|||+|||+++++++|+++|++||.|.+|++++ .||||||+|.+.++|.+|+ .|||.. +.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~------- 85 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA------- 85 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET-------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC-------
Confidence 3458899999999999999999999999999999985 3689999999999999999 999876 56
Q ss_pred ccCCCceEEeeccccCC
Q 022096 277 LFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~ 293 (302)
|+.|.|+|+..+.
T Consensus 86 ----Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 86 ----GHPAFVNYSTSQK 98 (100)
T ss_dssp ----TEEEEEEECSCSC
T ss_pred ----CcEEEEEeccccc
Confidence 8999999998764
No 248
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=123.32 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=74.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~-v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+ |.|+.+ .+|+++|||||+|.+.++|.+|+..||..++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~--------- 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIG--------- 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhC---------
Confidence 44589999999999999999999999999988 888888 6899999999999999999999944999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.++..+.
T Consensus 83 --gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 83 --HRYIEIFKSSRAE 95 (104)
T ss_dssp --SSCCEEEEECTTT
T ss_pred --CcEEEEEECCHHH
Confidence 8999998886654
No 249
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=9.1e-18 Score=118.56 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=67.7
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
...|+|+||++.+++++|+++|.+||.|.++.+.. +||||||+|.++++|.+|+ .|||..+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----------- 69 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLA----------- 69 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEET-----------
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEEC-----------
Confidence 36799999999999999999999999999999865 6899999999999999999 99999999
Q ss_pred CceEEeeccc
Q 022096 281 NYVLFVSFTY 290 (302)
Q Consensus 281 g~~l~v~~a~ 290 (302)
|+.|.|++|.
T Consensus 70 gr~I~V~~A~ 79 (89)
T 2wbr_A 70 NTTIFAESPS 79 (89)
T ss_dssp TEEEEEECCC
T ss_pred CcEEEEEECC
Confidence 8999999984
No 250
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.6e-18 Score=127.64 Aligned_cols=79 Identities=20% Similarity=0.312 Sum_probs=72.2
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCCC
Q 022096 100 CELYVCNL----PRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS----INS----AKNAII--ALDGSD 165 (302)
Q Consensus 100 ~~l~v~nL----p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 165 (302)
.+|||+|| |+.+++.+|+++|++||+|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 899998 789999
Q ss_pred cCCceEEEEEccc
Q 022096 166 VGGREMRVRFSID 178 (302)
Q Consensus 166 ~~g~~l~v~~a~~ 178 (302)
|+||.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 251
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=7e-18 Score=124.61 Aligned_cols=74 Identities=23% Similarity=0.489 Sum_probs=69.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||.++++++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.++..
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 48999999999999999999999999999999983 679999999999999999999999999999999998854
No 252
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=119.89 Aligned_cols=78 Identities=23% Similarity=0.402 Sum_probs=71.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|||+++++++|+++|++||.|..|.++++ ||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 344589999999999999999999999999999999753 999999999999999999999999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 976543
No 253
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=130.84 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCe----eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTV----LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v----~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
..++|||+|||+++|+++|+++|++||.| ..|+|+++ .+|+++|||||+|.+.++|++|++ .|+..|.||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEEE
Confidence 45899999999999999999999999975 68999998 589999999999999999999996 4999999999999
Q ss_pred EEcccC
Q 022096 174 RFSIDM 179 (302)
Q Consensus 174 ~~a~~~ 179 (302)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988543
No 254
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=127.82 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCe-EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV-VSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i-~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|+.||.| ..|+|++++ +|+++|||||+|.+.++|.+|+.+||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~--------- 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLN--------- 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEET---------
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccC---------
Confidence 445899999999999999999999999999 899999998 899999999999999999999955999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.++..+.
T Consensus 83 --gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 83 --GREAFVHVVTLED 95 (114)
T ss_dssp --TEEEEEEEECHHH
T ss_pred --CeEEEEEECCHHH
Confidence 8999999987654
No 255
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=9.6e-18 Score=127.52 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=75.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~ 276 (302)
...++|||+|||+++++++|+++|+.||. |..|+|++++. |+++|||||+|.+.++|.+|+.|||..|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~------- 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMG------- 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEET-------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeEC-------
Confidence 44589999999999999999999999999 89999999986 99999999999999999999999999999
Q ss_pred ccCCCceEEeeccccC
Q 022096 277 LFPFNYVLFVSFTYSK 292 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k 292 (302)
|+.|.|.++..+
T Consensus 87 ----gr~i~V~~a~~~ 98 (118)
T 2db1_A 87 ----HRYIEVFKSHRT 98 (118)
T ss_dssp ----TEEEEEEEECHH
T ss_pred ----CeEEEEEECCHH
Confidence 899999887543
No 256
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=2.3e-17 Score=120.98 Aligned_cols=76 Identities=18% Similarity=0.418 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 96 RARPCELYVCNLPR-SFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 96 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
....++|||+|||+ ++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EcccC
Q 022096 175 FSIDM 179 (302)
Q Consensus 175 ~a~~~ 179 (302)
++..+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98653
No 257
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=123.60 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=74.4
Q ss_pred CCCceEEEccCCCCC------CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccccee
Q 022096 200 ESPHKLYVGNLSWAV------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~------~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~ 272 (302)
...++|||+|||+.+ ++++|+++|++||.|.+|.|+ +.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~--- 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD--- 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS---
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC---
Confidence 335899999999999 789999999999999999988 358999999999999999999999 89999999
Q ss_pred eeccccCCCc-eEEeeccccCCC
Q 022096 273 AFQPLFPFNY-VLFVSFTYSKPS 294 (302)
Q Consensus 273 ~~~~~~~~g~-~l~v~~a~~k~~ 294 (302)
|+ .|.|+++....+
T Consensus 88 --------g~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 88 --------KQHTFRVNLFTDFDK 102 (105)
T ss_dssp --------TTCEEEEECSCCCCC
T ss_pred --------CCceEEEEEcchHhh
Confidence 88 999999876654
No 258
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.4e-17 Score=119.97 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=77.6
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|+.|+ .|.++.++.+++++|||||+|.+.++|.+|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~-------- 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID-------- 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET--------
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC--------
Confidence 34568999999999999999999999873 6788889889999999999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+.++.....-
T Consensus 81 ---g~~l~V~~a~~~~~~~~~ 98 (102)
T 2fc8_A 81 ---GNKVTLDWAKPKGEGGSG 98 (102)
T ss_dssp ---TEECEEEECCCCCSSSCS
T ss_pred ---CeEEEEEEecCCCCCCCC
Confidence 899999999988776544
No 259
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=120.25 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=70.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh--CCccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL--NGTVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l--~g~~~~~~~~~~~ 276 (302)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|+ .| ++..+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~------- 79 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR------- 79 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC-------
Confidence 45589999999999999999999999999999998865 689999999999999999 66 466787
Q ss_pred ccCCCceEEeeccccCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|+|+..+...+
T Consensus 80 ----Gr~l~V~~a~~~~~~~ 95 (101)
T 2cq1_A 80 ----NQPIYIQYSNHKELKT 95 (101)
T ss_dssp ----TEECEEEECSCSSCCC
T ss_pred ----CcEEEEEEcCcccCcC
Confidence 8999999998776544
No 260
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9.4e-18 Score=125.44 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=71.7
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
..+|||+|||+++++++|+++|++| .|.+|.|++++. |+++|||||+|.+.++|.+|+.|||..|+ |
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~-----------g 82 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMI-----------Q 82 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEET-----------T
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeEC-----------C
Confidence 4789999999999999999999999 899999999975 99999999999999999999999999999 7
Q ss_pred ceEEeecccc
Q 022096 282 YVLFVSFTYS 291 (302)
Q Consensus 282 ~~l~v~~a~~ 291 (302)
+.|.|..+..
T Consensus 83 r~i~V~~a~~ 92 (109)
T 2dnn_A 83 RYVEVSPATE 92 (109)
T ss_dssp EEEEEEECCH
T ss_pred eEEEEEECCc
Confidence 8888877654
No 261
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=8.9e-18 Score=130.51 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=75.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~ 276 (302)
...++|||+|||+++++++|+++|++||. |.+|+|++++. |+++|||||+|.+.++|.+|+.|||..++
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~------- 113 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMG------- 113 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESS-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEEC-------
Confidence 34589999999999999999999999999 89999999986 99999999999999999999999999999
Q ss_pred ccCCCceEEeeccccC
Q 022096 277 LFPFNYVLFVSFTYSK 292 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k 292 (302)
|+.|.|.++..+
T Consensus 114 ----gr~i~V~~a~~~ 125 (136)
T 2hgl_A 114 ----HRYIEVFKSHRT 125 (136)
T ss_dssp ----SSEEEEEECCHH
T ss_pred ----CEEEEEEECChH
Confidence 899999988654
No 262
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=2.3e-17 Score=122.32 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|..|.+++ |||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 448999999999999999999999999999999874 599999999999999999999999999999999998
Q ss_pred cCcccc
Q 022096 178 DMNSRT 183 (302)
Q Consensus 178 ~~~~~~ 183 (302)
.+....
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 765443
No 263
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=120.14 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPF--GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
...++|||+|||+++++++|+++|++| |.|..|++. +|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345899999999999999999999999 999998875 5699999999999999999999999999999999
Q ss_pred EcccCcc
Q 022096 175 FSIDMNS 181 (302)
Q Consensus 175 ~a~~~~~ 181 (302)
++..+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 264
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=128.83 Aligned_cols=80 Identities=24% Similarity=0.366 Sum_probs=75.1
Q ss_pred cCCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 199 YESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
....++|||+|||+.+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-------- 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF-------- 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET--------
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC--------
Confidence 345689999999999999999999999999999999999989999999999999999999999 99999999
Q ss_pred cCCCceEEeecc
Q 022096 278 FPFNYVLFVSFT 289 (302)
Q Consensus 278 ~~~g~~l~v~~a 289 (302)
|+.|.|.||
T Consensus 132 ---g~~l~v~~A 140 (140)
T 2ku7_A 132 ---GRTIRVNLA 140 (140)
T ss_dssp ---TEEEEEEC-
T ss_pred ---CEEEEEEeC
Confidence 899999885
No 265
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=4e-18 Score=118.79 Aligned_cols=75 Identities=27% Similarity=0.349 Sum_probs=70.4
Q ss_pred eEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCce
Q 022096 204 KLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNYV 283 (302)
Q Consensus 204 ~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~~ 283 (302)
+|||+|||+.+++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|+.++|..+. |+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~-----------g~~ 69 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVG-----------LSK 69 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBT-----------TBC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeEC-----------CEE
Confidence 589999999999999999999999999999999999999999999999999999999977999998 788
Q ss_pred EEeecc
Q 022096 284 LFVSFT 289 (302)
Q Consensus 284 l~v~~a 289 (302)
|.|.+|
T Consensus 70 l~v~~a 75 (75)
T 1iqt_A 70 CEIKVA 75 (75)
T ss_dssp CCEEEC
T ss_pred EEEEEC
Confidence 888764
No 266
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-17 Score=124.73 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|..|.|++ ++|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 47999999999999999999999999999998874 578999999999999999999999999999999999975
Q ss_pred C
Q 022096 179 M 179 (302)
Q Consensus 179 ~ 179 (302)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 267
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.9e-17 Score=124.08 Aligned_cols=80 Identities=29% Similarity=0.600 Sum_probs=74.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.+++ +.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~--------- 95 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE--------- 95 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 456899999999999999999999999999999999985 458999999999999999999 89999999
Q ss_pred CCCceEEeeccccC
Q 022096 279 PFNYVLFVSFTYSK 292 (302)
Q Consensus 279 ~~g~~l~v~~a~~k 292 (302)
|+.|.|.++.++
T Consensus 96 --g~~l~V~~a~~~ 107 (109)
T 2err_A 96 --GRKIEVNNATAR 107 (109)
T ss_dssp --TEECEEEECCCS
T ss_pred --CEEEEEEECCCC
Confidence 899999998876
No 268
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=119.06 Aligned_cols=76 Identities=25% Similarity=0.456 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|+++++ ||||+|.+.++|++|++.|||..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 34589999999999999999999999999999999743 9999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 269
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-17 Score=123.82 Aligned_cols=82 Identities=13% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCC--ccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG--TVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g--~~~~~~~~~~~ 276 (302)
.+.++|||+|||+++++++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|+ .|++ ..+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~------- 95 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR------- 95 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC-------
Confidence 34588999999999999999999999999999999876 689999999999999999 7875 5677
Q ss_pred ccCCCceEEeeccccCCCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|+|+..+.--...
T Consensus 96 ----Gr~l~V~~a~~k~~~~~~ 113 (119)
T 2ad9_A 96 ----GQPIYIQFSNHKELKTDS 113 (119)
T ss_dssp ----TBCCEEEECSSSSCCCCC
T ss_pred ----CeEEEEEEccCCCCCccc
Confidence 899999999887765544
No 270
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.4e-18 Score=132.71 Aligned_cols=81 Identities=15% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++|+++|+++|++|| |..|+|++++. |+++|||||+|.+.++|++|| .+|+..|.||.|.|..+
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3458999999999999999999999999 77999999976 999999999999999999999 89999999999999998
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 121 ~~~~ 124 (139)
T 2hgn_A 121 STTG 124 (139)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7544
No 271
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.5e-17 Score=127.37 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCee--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVL--SVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~--~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
..++|||+|||+++|+++|+++|++| .|. .|+|++++. |+++|||||+|.+.++|++|++ +++..|.||.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 34889999999999999999999999 566 899999977 9999999999999999999995 688999999999988
Q ss_pred ccc
Q 022096 176 SID 178 (302)
Q Consensus 176 a~~ 178 (302)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 272
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.3e-18 Score=129.35 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=75.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||.|||..|+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~---------- 92 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMG---------- 92 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCST----------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeEC----------
Confidence 4458999999999999999999999999999877777777999999999999999999999999999999
Q ss_pred CCceEEeeccccC
Q 022096 280 FNYVLFVSFTYSK 292 (302)
Q Consensus 280 ~g~~l~v~~a~~k 292 (302)
|+.|.|.++..+
T Consensus 93 -gr~i~V~~a~~~ 104 (124)
T 1wel_A 93 -NRFIQVHPITKK 104 (124)
T ss_dssp -TSCBEEEEECHH
T ss_pred -CcEEEEEECCHH
Confidence 899999998654
No 273
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=3.8e-17 Score=122.60 Aligned_cols=75 Identities=16% Similarity=0.395 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|++|++.|+|..|.|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 5789999999999999999999999999999999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 274
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=3.1e-17 Score=133.53 Aligned_cols=82 Identities=23% Similarity=0.346 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+++++++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999997 8999999999999999999999999999999999999998
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 275
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=126.11 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=71.9
Q ss_pred CCCceEEEccCCCCCCHHHHH----HhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----- 98 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----- 98 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCT-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeC-----
Confidence 445899999999999999876 6999999999988753 6789999999999999999999 99999999
Q ss_pred ccccCCCceEEeeccccCC
Q 022096 275 QPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~k~ 293 (302)
|+.|.|+|+..+.
T Consensus 99 ------gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 99 ------GNPLVITFSETPQ 111 (127)
T ss_dssp ------TSCCEEEECCCCC
T ss_pred ------CCEEEEEEccCcc
Confidence 8999999998764
No 276
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=117.98 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=61.3
Q ss_pred ceEEEccCCCCC------CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 203 HKLYVGNLSWAV------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 203 ~~l~v~nlp~~~------~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
++|||+|||+.+ ++++|+++|++||.|.+|.+. +.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 689999999999 679999999999999999987 358999999999999999999999 89999999
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=119.40 Aligned_cols=77 Identities=26% Similarity=0.481 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|.+| +.++.+|. ||||+|.+.++|.+|++ |+|..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 34799999999999999999999999999987 66666665 99999999999999998 99999999999999876
Q ss_pred cCc
Q 022096 178 DMN 180 (302)
Q Consensus 178 ~~~ 180 (302)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 278
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=115.68 Aligned_cols=80 Identities=19% Similarity=0.397 Sum_probs=73.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 68 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH--------- 68 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS---------
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC---------
Confidence 445899999999999999999999999999999987 579999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.|+.++.....-
T Consensus 69 --g~~l~v~~a~~~~~~~~~ 86 (90)
T 2dnq_A 69 --GVNINVEASKNKSKASSG 86 (90)
T ss_dssp --SCBCEEECSSCCCCCCSS
T ss_pred --CcEEEEEECCCCCCCCCC
Confidence 899999999988776543
No 279
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=120.29 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=70.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc--ccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV--ESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~--~~~~~~~~~ 276 (302)
.+.++|||+|||+.+++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|+ .|++.. +.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~------- 79 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA------- 79 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC-------
Confidence 44589999999999999999999999999999998764 689999999999999999 787654 66
Q ss_pred ccCCCceEEeeccccCCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|+|+..+...+
T Consensus 80 ----Gr~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 80 ----GQQAFFNYSTSKRITR 95 (104)
T ss_dssp ----SSBCEEEECSSSSCCC
T ss_pred ----CEEEEEEEccCccccC
Confidence 8999999998776543
No 280
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=3e-17 Score=151.75 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|||+.+|+++|..+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 76543
No 281
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-18 Score=125.26 Aligned_cols=81 Identities=17% Similarity=0.183 Sum_probs=74.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC---eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT---VVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~---i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~ 276 (302)
...++|||+|||+++++++|+++|+.||. |..|.|++++. |+++|||||+|.+.++|.+|+.+||..++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~------- 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMG------- 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSS-------
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeC-------
Confidence 44589999999999999999999999988 99999999987 99999999999999999999999999999
Q ss_pred ccCCCceEEeeccccC
Q 022096 277 LFPFNYVLFVSFTYSK 292 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k 292 (302)
|+.|.|.++..+
T Consensus 81 ----gr~i~V~~a~~~ 92 (107)
T 2lmi_A 81 ----QRYVEVYEINNE 92 (107)
T ss_dssp ----SSCCCCEECCHH
T ss_pred ----CeEEEEEECCHH
Confidence 888988887654
No 282
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.5e-17 Score=121.62 Aligned_cols=81 Identities=23% Similarity=0.441 Sum_probs=75.2
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g 281 (302)
++|||+|||+.+++++|+++|++||.|.+|.+.++ ++|||||+|.+.++|.+|+ .|||..+. |
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~-----------g 64 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVIC-----------G 64 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSS-----------S
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeEC-----------C
Confidence 47999999999999999999999999999999887 6889999999999999999 89999999 8
Q ss_pred ceEEeeccccCCCCCCCC
Q 022096 282 YVLFVSFTYSKPSCRTFG 299 (302)
Q Consensus 282 ~~l~v~~a~~k~~~~~~~ 299 (302)
+.|.|.|+..+.+...+|
T Consensus 65 ~~l~V~~a~~~~~~~~~~ 82 (101)
T 2hvz_A 65 SRVRVELSTGMPRRSRFD 82 (101)
T ss_dssp CCCEEEESSSCCCSSCCC
T ss_pred cEEEEEEccCCCCcccCC
Confidence 999999999988766654
No 283
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=120.21 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CCcCCceEEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGT-VLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG-SDVGGREMRVRF 175 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~ 175 (302)
..++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..+.|+.|.|.+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4489999999999999999999999999 6666653 578999999999999999999999 999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 976544
No 284
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=119.58 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=73.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~--------- 76 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR--------- 76 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEE---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCcc---------
Confidence 34589999999999999999999999999999999887 79999999999999999 89999999
Q ss_pred CCC-----ceEEeeccccCCCCC
Q 022096 279 PFN-----YVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g-----~~l~v~~a~~k~~~~ 296 (302)
| +.|.|.++.++....
T Consensus 77 --g~~~~~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 77 --SHEGETAYIRVKVDGPRSPSY 97 (108)
T ss_dssp --CTTSCEEEEEEEESSCCSCCC
T ss_pred --CCcCcceEEEEEeCCCCCCCC
Confidence 7 999999998877654
No 285
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-18 Score=125.32 Aligned_cols=84 Identities=20% Similarity=0.309 Sum_probs=76.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+.+++++|+++|++||.|.. .++.+..+|+++|||||+|.+.++|.+|+.|||..+.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~---------- 83 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVF---------- 83 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBT----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEEC----------
Confidence 34689999999999999999999999999888 6777777899999999999999999999999999999
Q ss_pred CCceEEeeccccCCCC
Q 022096 280 FNYVLFVSFTYSKPSC 295 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.++.++...
T Consensus 84 -g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 84 -GNEIKLEKPKGRDGT 98 (101)
T ss_dssp -TBCCEEECCSCCCCS
T ss_pred -CcEEEEEEcCCCCCC
Confidence 899999999877654
No 286
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=118.78 Aligned_cols=78 Identities=24% Similarity=0.340 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSV-EVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
..++|||+|||+++++++|+++|++||.|..| .++.++.++ .|||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999 488876544 3999999999999999999999999999999999
Q ss_pred ccC
Q 022096 177 IDM 179 (302)
Q Consensus 177 ~~~ 179 (302)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 765
No 287
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=4.8e-17 Score=117.02 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++| .|..|++. +++|||||+|.+.++|++|++.|||..+.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 34889999999999999999999999 99999884 588999999999999999999999999999999999985
Q ss_pred c
Q 022096 178 D 178 (302)
Q Consensus 178 ~ 178 (302)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 288
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=117.14 Aligned_cols=78 Identities=23% Similarity=0.467 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 96 RARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
....++|||+|| ++++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345589999996 89999999999999999999984 4789999999999999999999999999999999999
Q ss_pred cccCcc
Q 022096 176 SIDMNS 181 (302)
Q Consensus 176 a~~~~~ 181 (302)
+..+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976544
No 289
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=3.7e-17 Score=138.56 Aligned_cols=80 Identities=20% Similarity=0.353 Sum_probs=75.0
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCC--CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFG--TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G--~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
..++|||+||++.+++++|+++|++|| .|.+|+|++|+.+|+++|||||+|.+.++|.+|| .|||..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~-------- 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH-------- 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT--------
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC--------
Confidence 347899999999999999999999999 9999999999999999999999999999999999 89999999
Q ss_pred cCCCceEEeecccc
Q 022096 278 FPFNYVLFVSFTYS 291 (302)
Q Consensus 278 ~~~g~~l~v~~a~~ 291 (302)
|+.|.|.|+..
T Consensus 139 ---Gr~l~V~~a~~ 149 (229)
T 3q2s_C 139 ---GQNPVVTPVNK 149 (229)
T ss_dssp ---TBCCEEEECCH
T ss_pred ---CEEeEEEECCC
Confidence 89999999854
No 290
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=8.5e-18 Score=132.23 Aligned_cols=85 Identities=21% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE--V---SRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~--i---~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
...++|||+|||+++|+++|+++|++||.|..+. + ++...+|.++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3458999999999999999999999999988741 1 1112468899999999999999999999999999999999
Q ss_pred EEEEcccCcc
Q 022096 172 RVRFSIDMNS 181 (302)
Q Consensus 172 ~v~~a~~~~~ 181 (302)
.|.++.....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 291
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=120.01 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=69.2
Q ss_pred CCCceEEEccCCC-CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc--ccceeeec
Q 022096 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV--ESHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v~nlp~-~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~--~~~~~~~~ 275 (302)
.+.++|||+|||+ .+++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|+ .|||.. +.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~------ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF------ 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET------
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC------
Confidence 3558999999999 9999999999999999999999876 368999999999999999 888754 77
Q ss_pred cccCCCceEEeeccccCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|+|+..+..
T Consensus 81 -----Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 81 -----GKPVRVHLSQKYKR 94 (102)
T ss_dssp -----TEECEEEEECCCTT
T ss_pred -----CcEEEEEECCCCCC
Confidence 89999999986543
No 292
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-17 Score=124.83 Aligned_cols=86 Identities=27% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..+.+..+..+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--------- 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY--------- 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 44589999999999999999999999999854433333337889999999999999999999 89999998
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+....
T Consensus 94 --g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 94 --GKILVIEFGKNKKQRS 109 (115)
T ss_dssp --SCBCEEEECCCCSCCC
T ss_pred --CcEEEEEEccCCCCCC
Confidence 8999999998876543
No 293
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=125.32 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCe----EEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeec
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTV----VSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i----~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~ 275 (302)
....+|||+|||+++++++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|.+|+..|+..|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~------ 93 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLG------ 93 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESS------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeC------
Confidence 345899999999999999999999999875 699999995 899999999999999999999955999999
Q ss_pred cccCCCceEEeecccc
Q 022096 276 PLFPFNYVLFVSFTYS 291 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~ 291 (302)
++.|.|..+..
T Consensus 94 -----gR~i~V~~a~~ 104 (123)
T 2dha_A 94 -----KRYIELFRSTA 104 (123)
T ss_dssp -----SCEECCEEECH
T ss_pred -----CeEEEEEECCH
Confidence 78888877643
No 294
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=5.3e-17 Score=118.64 Aligned_cols=81 Identities=19% Similarity=0.305 Sum_probs=72.6
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+ .|||..+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 79 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID--------- 79 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 345899999999999999999999999988766 347899999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++...+
T Consensus 80 --g~~l~v~~a~~~~~~~ 95 (96)
T 1fjc_A 80 --GRSVSLYYTGEKGGTR 95 (96)
T ss_dssp --TEEEEEEECSSSCCCC
T ss_pred --CeEEEEEEcCCCCCCC
Confidence 8999999998877643
No 295
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=117.39 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~--------- 77 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR--------- 77 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC---------
Confidence 45589999999999999999999999999999999854 689999999999999999 99999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+.++..
T Consensus 78 --g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 78 --GKQLRVRFACHSAS 91 (99)
T ss_dssp --TBCCEEEESSCCSC
T ss_pred --CceEEEEEcCCCCC
Confidence 89999999988654
No 296
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=113.91 Aligned_cols=72 Identities=32% Similarity=0.390 Sum_probs=64.8
Q ss_pred CE-EEEcCCCCCCCHHH----HHHhhcCC-CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 100 CE-LYVCNLPRSFDISE----LLEMFKPF-GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 100 ~~-l~v~nLp~~~t~~~----l~~~f~~~-G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
.+ |||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+|..+.||.|+|
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 45 99999999999988 55899999 599988 23 99999999999999999999999999999999
Q ss_pred EEcccCcc
Q 022096 174 RFSIDMNS 181 (302)
Q Consensus 174 ~~a~~~~~ 181 (302)
.+|..+..
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99976543
No 297
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.9e-17 Score=121.67 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPET---GISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVR 174 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 174 (302)
..++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|++|++.|++ ++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 348999999999999999999999999999 888888777 79999999999999999999998843 677777776
Q ss_pred Ec
Q 022096 175 FS 176 (302)
Q Consensus 175 ~a 176 (302)
.+
T Consensus 84 ~~ 85 (114)
T 2dnl_A 84 SS 85 (114)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 298
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.8e-17 Score=129.21 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+++++++|+++|++|| |.+|.|++|++ |+++|||||+|.+.++|.+||.+|+..|.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~---------- 111 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQ---------- 111 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSS----------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEEC----------
Confidence 3457999999999999999999999999 66999999986 99999999999999999999999999999
Q ss_pred CCceEEeeccccCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~ 296 (302)
++.|.|..+..+...+
T Consensus 112 -gR~i~V~~a~~~~~~~ 127 (139)
T 2hgn_A 112 -HRYIELFLNSTTGASN 127 (139)
T ss_dssp -SCCCCCEECCCSCC--
T ss_pred -CEEEEEEECCCCCCCC
Confidence 8899999888776543
No 299
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=119.24 Aligned_cols=81 Identities=22% Similarity=0.451 Sum_probs=74.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 87 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE--------- 87 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET---------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 34589999999999999999999999999999999886 689999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 88 --g~~l~v~~a~~~~~~~~ 104 (109)
T 1x4g_A 88 --GHVVKCYWGKESPDMTS 104 (109)
T ss_dssp --TEECEEECCCCCCSSCC
T ss_pred --CcEEEEEecCCCCCCCC
Confidence 89999999988876543
No 300
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.5e-18 Score=130.39 Aligned_cols=87 Identities=20% Similarity=0.258 Sum_probs=80.5
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccce
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVS--------ARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHT 271 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~--------v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~ 271 (302)
..++|||+|||+.+++++|+++|++||.|.. |.|+.++.+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 83 (116)
Confidence 4578999999999999999999999999999 999999889999999999999999999999 89999999
Q ss_pred eeeccccCCCceEEeeccccCCCCCCC
Q 022096 272 VAFQPLFPFNYVLFVSFTYSKPSCRTF 298 (302)
Q Consensus 272 ~~~~~~~~~g~~l~v~~a~~k~~~~~~ 298 (302)
|+.|.|.++.++.....-
T Consensus 84 ---------g~~l~V~~a~~~~~~~~g 101 (116)
T 2lcw_A 84 ---------GNPIKVSFATRRADFNRG 101 (116)
Confidence 899999999888765443
No 301
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=5.9e-16 Score=117.94 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=67.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC-GYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a 176 (302)
..|||+||++.+++++|+++|++||.|.+|.|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45789999999999999999999999999999752 276 9999999999999999999999987 69999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7654
No 302
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=4.2e-17 Score=119.38 Aligned_cols=81 Identities=22% Similarity=0.399 Sum_probs=74.0
Q ss_pred CCCceEEEccCCCCCCHHHHH----HhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLR----NHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~----~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +|.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----- 77 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY----- 77 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEET-----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC-----
Confidence 445899999999999999999 9999999999998874 5778999999999999999999 89999998
Q ss_pred ccccCCCceEEeeccccCCC
Q 022096 275 QPLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|+|+.++..
T Consensus 78 ------g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 ------DKPMRIQYAKTDSD 91 (97)
T ss_dssp ------TEECEEEECSSCCT
T ss_pred ------CcEEEEEEccCCCc
Confidence 89999999988654
No 303
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=1.8e-16 Score=121.37 Aligned_cols=76 Identities=26% Similarity=0.353 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGC-GYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a 176 (302)
..|||+||++.+|+++|+++|++||.|.+|.++.+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 57889999999999999999999999999998864 3677 9999999999999999999999988 99999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
+...
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 7653
No 304
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=6.4e-17 Score=121.21 Aligned_cols=78 Identities=19% Similarity=0.114 Sum_probs=69.4
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
.++|||+|||+++++++|+++|++|| .|..+.|..+ +++|||||+|.+.++|++|+ .|||..+.
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---------- 93 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFR---------- 93 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEET----------
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEEC----------
Confidence 47899999999999999999999999 8999988543 47899999999999999999 99999999
Q ss_pred CCceEEeeccccCCC
Q 022096 280 FNYVLFVSFTYSKPS 294 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.++..++.
T Consensus 94 -Gr~i~V~~a~~~p~ 107 (111)
T 2jvr_A 94 -GSVITVERDDNPPP 107 (111)
T ss_dssp -TEEEEEEESCC---
T ss_pred -CeEEEEEECCCCCC
Confidence 89999999876643
No 305
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=116.24 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|. +.++.+ +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~--------- 82 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG--------- 82 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS---------
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 4458999999999999999999999999997 666654 57899999999999999999 99999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.++.++..
T Consensus 83 --g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 83 --TDTLRVALARQQRD 96 (97)
T ss_dssp --SSCCEEEECCCCCC
T ss_pred --CcEEEEEEcCCCCC
Confidence 89999999988754
No 306
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=6.5e-17 Score=119.56 Aligned_cols=82 Identities=21% Similarity=0.450 Sum_probs=74.6
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFN 281 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g 281 (302)
.++|||+|||+.+++++|+++|++||.|.+|.+++++ +|+++|||||+|.+.++|.+|+. +|..++ |
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~-----------g 75 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFH-----------G 75 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEET-----------T
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeEC-----------C
Confidence 4799999999999999999999999999999999998 99999999999999999999999 999999 8
Q ss_pred ceEEeeccccCCCCC
Q 022096 282 YVLFVSFTYSKPSCR 296 (302)
Q Consensus 282 ~~l~v~~a~~k~~~~ 296 (302)
+.|.|.++..+..-.
T Consensus 76 ~~l~v~~a~~~~~~~ 90 (102)
T 2xs2_A 76 KKLKLGPAIRKQNLS 90 (102)
T ss_dssp EECEEEEEEECC---
T ss_pred EEEEEEECCcCcchh
Confidence 889988887766543
No 307
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=2.4e-16 Score=115.44 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=69.4
Q ss_pred CCCceEEEccCCC-CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 200 ~~~~~l~v~nlp~-~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
...++|||+|||+ .+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~-------- 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF-------- 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET--------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC--------
Confidence 4458999999998 99999999999999999999983 689999999999999999 89999999
Q ss_pred cCCCceEEeeccccCC
Q 022096 278 FPFNYVLFVSFTYSKP 293 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+..+.
T Consensus 84 ---g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 84 ---GKKLILEVSSSNA 96 (97)
T ss_dssp ---TEECEEEECCCCC
T ss_pred ---CEEEEEEecCCCC
Confidence 8999999988765
No 308
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=5e-17 Score=124.38 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeE--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVV--SARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPL 277 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~--~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~ 277 (302)
...++|||+|||+++++++|+++|++| .|. +|+|++|+. |+++|||||+|.+.++|.+|+.+++..|+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~-------- 109 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIG-------- 109 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBT--------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEEC--------
Confidence 345889999999999999999999999 566 999999986 99999999999999999999976888898
Q ss_pred cCCCceEEeecccc
Q 022096 278 FPFNYVLFVSFTYS 291 (302)
Q Consensus 278 ~~~g~~l~v~~a~~ 291 (302)
|+.|.|..+..
T Consensus 110 ---gR~I~V~~a~~ 120 (126)
T 2hgm_A 110 ---HRYIEVFKSSQ 120 (126)
T ss_dssp ---TBCCCCEEECH
T ss_pred ---CEEEEEEECCH
Confidence 78888877654
No 309
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.7e-17 Score=120.87 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=68.4
Q ss_pred CCCceEEEccCCCC-CCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCC--ccccceeeec
Q 022096 200 ESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG--TVESHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v~nlp~~-~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g--~~~~~~~~~~ 275 (302)
.+.++|||+|||++ +++++|+++|++||.|.+|+|++ +||||||+|.+.++|.+|+ .||+ ..+.
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~------ 90 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQ------ 90 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSS------
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceEC------
Confidence 45689999999998 99999999999999999999974 4689999999999999999 7865 4577
Q ss_pred cccCCCceEEeeccccCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|+|+..+..
T Consensus 91 -----Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 91 -----GRCVKVDLSEKYKK 104 (112)
T ss_dssp -----SSCCEEEEECSCSS
T ss_pred -----CEEEEEEECccccc
Confidence 89999999876543
No 310
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=1.9e-16 Score=125.71 Aligned_cols=78 Identities=26% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC--ceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG--REMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~a 176 (302)
..+|||+||++.+|+++|+++|++||+|.+|.|..+ .++|||||+|.+.++|++|++.|||..|.| +.|+|.++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 367999999999999999999999999999999754 257899999999999999999999999965 99999999
Q ss_pred ccCc
Q 022096 177 IDMN 180 (302)
Q Consensus 177 ~~~~ 180 (302)
..+.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 7653
No 311
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.3e-16 Score=117.69 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=69.0
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+.+++++|+++|++||.|.+|++. +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----------- 89 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQ----------- 89 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEET-----------
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeEC-----------
Confidence 4799999999999999999999999999999987 35789999999999999999 99999999
Q ss_pred CceEEeeccccC
Q 022096 281 NYVLFVSFTYSK 292 (302)
Q Consensus 281 g~~l~v~~a~~k 292 (302)
|+.|.|.|+.++
T Consensus 90 g~~l~V~~a~~~ 101 (101)
T 2la4_A 90 GRNLRTGWGKER 101 (101)
T ss_dssp TEECCCCBCCCC
T ss_pred CeEEEEEeccCC
Confidence 899999998764
No 312
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.6e-16 Score=114.42 Aligned_cols=75 Identities=19% Similarity=0.338 Sum_probs=63.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc--CCceEEEE
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV--GGREMRVR 174 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~--~g~~l~v~ 174 (302)
....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++ ++|..+ .|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 34589999999999999999999999999999999875 78999999999999984 455554 69999999
Q ss_pred EcccCc
Q 022096 175 FSIDMN 180 (302)
Q Consensus 175 ~a~~~~ 180 (302)
++.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 987543
No 313
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=112.36 Aligned_cols=74 Identities=28% Similarity=0.451 Sum_probs=68.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh-CCccccceeeeccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL-NGTVESHTVAFQPL 277 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l-~g~~~~~~~~~~~~ 277 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|+ .| ||..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~-------- 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN-------- 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET--------
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC--------
Confidence 45589999999999999999999999999999999874 689999999999999999 78 999999
Q ss_pred cCCCceEEeeccc
Q 022096 278 FPFNYVLFVSFTY 290 (302)
Q Consensus 278 ~~~g~~l~v~~a~ 290 (302)
|+.|.|.|++
T Consensus 76 ---g~~l~v~~ak 85 (85)
T 2ytc_A 76 ---GRRLNVKWGR 85 (85)
T ss_dssp ---TEECCEEECC
T ss_pred ---CCEEEEEecC
Confidence 8999999874
No 314
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=9.9e-17 Score=121.32 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce-----EE
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE-----MR 172 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~-----l~ 172 (302)
..++|||+|||+++++++|+++|++||+|..|.|+.+ |||||+|.+.++|++||+.|||..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3589999999999999999999999999999999875 89999999999999999999999999998 77
Q ss_pred EEEcccC
Q 022096 173 VRFSIDM 179 (302)
Q Consensus 173 v~~a~~~ 179 (302)
|..+...
T Consensus 88 v~~~~~~ 94 (115)
T 3beg_B 88 VKVDGPR 94 (115)
T ss_dssp EEECC--
T ss_pred eccCCCC
Confidence 7766543
No 315
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=2.3e-16 Score=117.88 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=70.3
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~--------- 91 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA--------- 91 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 445899999999999999999999999999999997 689999999999999999 89999998
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+..+..
T Consensus 92 --g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 92 --NQPLEVVYSKLPAK 105 (108)
T ss_dssp --TEECEEESCSCCC-
T ss_pred --CeEEEEEEecCCCC
Confidence 89999999987765
No 316
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=114.28 Aligned_cols=81 Identities=26% Similarity=0.396 Sum_probs=71.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
.+.++|||+|||+.+++++|+++|++||.|.+|.+.++ +|||||+|.+.++|.+|+ .|||..+.+.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~------- 81 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGP------- 81 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSS-------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCC-------
Confidence 34589999999999999999999999999999998754 679999999999999999 8999998721
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 82 --g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 82 --DRRLRVDFAKSGPSS 96 (97)
T ss_dssp --SCBCEEEECCCCCCC
T ss_pred --CcEEEEEECCCCCCC
Confidence 589999999887653
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.5e-17 Score=120.41 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=68.4
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc-----CCce
Q 022096 98 RPCELYV--CNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV-----GGRE 170 (302)
Q Consensus 98 ~~~~l~v--~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~-----~g~~ 170 (302)
+.++||| +||++++++++|+++|++||.|.+|.|+. .+|||||+|.+.++|++|++.|||..+ .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3588999 77999999999999999999999998864 378999999999999999999999988 6899
Q ss_pred EEEEEcccC
Q 022096 171 MRVRFSIDM 179 (302)
Q Consensus 171 l~v~~a~~~ 179 (302)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999988643
No 318
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=3.7e-16 Score=115.73 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=71.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.+++ |||||+|.+.++|.+|+ .|||..+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~--------- 71 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLE--------- 71 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccC---------
Confidence 4458999999999999999999999999999999873 48999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+.++.....
T Consensus 72 --g~~l~v~~a~~~~~~~~ 88 (103)
T 2dgu_A 72 --GENIEIVFAKPPDQKRK 88 (103)
T ss_dssp --TEEEEEEECCCCCCCCC
T ss_pred --CCEEEEEEcCCCcccch
Confidence 89999999988766443
No 319
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=1.4e-16 Score=120.35 Aligned_cols=81 Identities=25% Similarity=0.425 Sum_probs=73.2
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.++++ +.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--------- 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS--------- 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC---------
Confidence 34589999999999999999999999999999999876 446999999999999999999 89999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+.++..
T Consensus 74 --g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 74 --NRYLVVLYYNANRA 87 (115)
T ss_dssp --SCBCEEEECCHHHH
T ss_pred --CeEEEEEEecCChh
Confidence 89999999976443
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.3e-16 Score=115.33 Aligned_cols=79 Identities=23% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCceEEEccCCC-CCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccc
Q 022096 200 ESPHKLYVGNLSW-AVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPL 277 (302)
Q Consensus 200 ~~~~~l~v~nlp~-~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~ 277 (302)
...++|||+|||+ .+++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~-------- 71 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNF-------- 71 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCB--------
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeC--------
Confidence 4458999999998 99999999999999999999984 679999999999999999 89999999
Q ss_pred cCCCceEEeeccccCCCCCC
Q 022096 278 FPFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 278 ~~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|.|+..+.++..
T Consensus 72 ---g~~l~V~~a~~~~~~~~ 88 (96)
T 2kvi_A 72 ---GKKLILEVSSSNARPQF 88 (96)
T ss_dssp ---TTTBCEEEEECCCC---
T ss_pred ---CcEEEEEEcCcCCCCCC
Confidence 89999999988776543
No 321
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=6.4e-16 Score=111.98 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=71.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.++ ||||+|.+.++|.+|+ .|||..+.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~--------- 70 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQ--------- 70 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeC---------
Confidence 44589999999999999999999999999999999743 8999999999999999 99999999
Q ss_pred CCCceEEeeccccCCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCRT 297 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~~ 297 (302)
|+.|.|+|+.++.....
T Consensus 71 --g~~l~V~~a~~~~~~~~ 87 (92)
T 2dgt_A 71 --GKRMHVQLSTSRLRTAS 87 (92)
T ss_dssp --TEEEEEEESSCCCSCCC
T ss_pred --CcEEEEEEccCCCCCCC
Confidence 89999999988766543
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=1.4e-16 Score=119.53 Aligned_cols=76 Identities=26% Similarity=0.477 Sum_probs=69.8
Q ss_pred CceEEEccCCCC-CCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 202 PHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 202 ~~~l~v~nlp~~-~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
.++|||+|||+. +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|+ .|||..+.
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~---------- 88 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA---------- 88 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET----------
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC----------
Confidence 479999999999 999999999999999999998 4689999999999999999 99999999
Q ss_pred CCceEEeeccccCCCCC
Q 022096 280 FNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+..+...+
T Consensus 89 -g~~l~V~~a~~~~~~~ 104 (110)
T 1wf1_A 89 -GQTLDINMAGEPKPDR 104 (110)
T ss_dssp -TEECCEEESCCCCSCC
T ss_pred -CeEEEEEECCCCCCCC
Confidence 8999999998655443
No 323
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.7e-16 Score=112.83 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=70.4
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccC--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRF--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
...++|||+|||+.+++++|+++|++| |.|..|.+. +|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~------- 77 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD------- 77 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET-------
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC-------
Confidence 445899999999999999999999999 899998764 569999999999999999 89999999
Q ss_pred ccCCCceEEeeccccCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++.+.
T Consensus 78 ----g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 78 ----GSPIEVTLAKPVDKD 92 (99)
T ss_dssp ----TEEEEEECCCCCCCC
T ss_pred ----CcEEEEEECCCCCCC
Confidence 899999999887764
No 324
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=7.6e-16 Score=117.87 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=66.4
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF-GFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
..|||+||++.+++++|+++|++||.|.+|+++.+ .+|| |||+|.+.++|.+|+ .|||+.|.+.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--------- 94 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA--------- 94 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETT---------
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCC---------
Confidence 57889999999999999999999999999998764 2577 999999999999999 9999999821
Q ss_pred CceEEeeccccC
Q 022096 281 NYVLFVSFTYSK 292 (302)
Q Consensus 281 g~~l~v~~a~~k 292 (302)
.+.|+|.|++.+
T Consensus 95 ~~~LrI~~ak~~ 106 (130)
T 3zzy_A 95 CCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEEEECSCS
T ss_pred CcEEEEEecCCC
Confidence 277888887654
No 325
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=6.6e-16 Score=134.91 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC-CceEEEEEc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFS 176 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a 176 (302)
..++|||+|||.++++++|+++|++||.|.+|+++.++ +|||||+|.+.++|.+|++.|||..|. |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 45889999999999999999999999999999999753 589999999999999999999999999 999999998
Q ss_pred c
Q 022096 177 I 177 (302)
Q Consensus 177 ~ 177 (302)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 4
No 326
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=111.70 Aligned_cols=78 Identities=28% Similarity=0.480 Sum_probs=71.0
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|.+|.+.++ ||||+|.+.++|.+|+ .|||..+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~--------- 69 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVK--------- 69 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEET---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 44589999999999999999999999999999999744 8999999999999999 89999999
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 70 --g~~l~v~~a~~~~~~~ 85 (90)
T 2dnp_A 70 --GKRINVELSTKGQKKS 85 (90)
T ss_dssp --TEECEEEESCCCCCCC
T ss_pred --CcEEEEEECCCCCCCC
Confidence 8999999998876543
No 327
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=7e-16 Score=114.48 Aligned_cols=81 Identities=20% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhhcCCCCeeEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 98 RPCELYVCNLPR-----SFDISELLEMFKPFGTVLSVEVSRNPET-GISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 98 ~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
.+++|+|+||.. +-++++|+++|++||.|.+|.|++++.+ +.++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 458999999963 2378999999999999999999998654 6899999999999999999999999999999999
Q ss_pred EEEEccc
Q 022096 172 RVRFSID 178 (302)
Q Consensus 172 ~v~~a~~ 178 (302)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999853
No 328
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.1e-16 Score=118.13 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=68.3
Q ss_pred ceEEEccC----CCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHH---HhCCcc
Q 022096 203 HKLYVGNL----SWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS----DAE----RDAAL---SLNGTV 267 (302)
Q Consensus 203 ~~l~v~nl----p~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~----~~~----A~~Al---~l~g~~ 267 (302)
..|||+|| |+.+++++|+++|++||.|.++.++.|++||+++|||||+|.+ +++ |.+|+ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 67776 379999
Q ss_pred ccceeeeccccCCCceEEeeccc
Q 022096 268 ESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 268 ~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
|+ |+.|.|.+..
T Consensus 83 I~-----------Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IM-----------GFKFEVILNK 94 (136)
T ss_dssp ET-----------TEEEEEEECC
T ss_pred ec-----------CcEEEEEECc
Confidence 99 7888888754
No 329
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=7.2e-16 Score=122.42 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=69.1
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
..+|||+||++.+++++|+++|++||.|.+|+|..+. ++|||||+|.+.++|.+|+ .|||..|.+.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--------- 112 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNA--------- 112 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSS---------
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCC---------
Confidence 3678999999999999999999999999999987542 5799999999999999999 9999999621
Q ss_pred CceEEeeccccCC
Q 022096 281 NYVLFVSFTYSKP 293 (302)
Q Consensus 281 g~~l~v~~a~~k~ 293 (302)
++.|.|+|+..+.
T Consensus 113 g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 113 CCTLRIDFSKLTS 125 (164)
T ss_dssp CSCEEEEECSSSS
T ss_pred CcEEEEEEecCCc
Confidence 4888888887653
No 330
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=118.25 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=68.3
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
.++|||+|||+.+++++|+++|++||.|.+|.+.+ ++|||||+|.+.++|.+|+ .|||..+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~----------- 72 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFH----------- 72 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSS-----------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEEC-----------
Confidence 47899999999999999999999999999998864 5679999999999999999 99999999
Q ss_pred CceEEeeccccC
Q 022096 281 NYVLFVSFTYSK 292 (302)
Q Consensus 281 g~~l~v~~a~~k 292 (302)
|+.|.|.|+...
T Consensus 73 g~~l~V~~a~~~ 84 (111)
T 1whx_A 73 HVPLYLEWAPIG 84 (111)
T ss_dssp SSBCEEEEEETT
T ss_pred CeEEEEEECCCC
Confidence 899999998654
No 331
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=2e-16 Score=113.27 Aligned_cols=70 Identities=26% Similarity=0.567 Sum_probs=65.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF----G-------TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .|||..+.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4899999999999999999999999 8 9999998764 789999999999999999 99999999
Q ss_pred CceEEEEE
Q 022096 168 GREMRVRF 175 (302)
Q Consensus 168 g~~l~v~~ 175 (302)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 332
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=3.3e-16 Score=127.48 Aligned_cols=82 Identities=26% Similarity=0.311 Sum_probs=76.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|||+.+++++|+++|++||.|..|.|..++ +|.++|||||+|.+.++|.+|+ .|||..+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~--------- 155 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD--------- 155 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---------
Confidence 456899999999999999999999999999999999998 8999999999999999999999 89999999
Q ss_pred CCCceEEeeccccCC
Q 022096 279 PFNYVLFVSFTYSKP 293 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+....
T Consensus 156 --Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 156 --GRPMDIQLVASQI 168 (177)
T ss_dssp --SSBCEEEEESSGG
T ss_pred --CEEEEEEEecCCC
Confidence 8999999987654
No 333
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=7.8e-16 Score=117.36 Aligned_cols=77 Identities=23% Similarity=0.477 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
...++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 34689999996 69999999999999999999986 47899999999999999999999999999999999999
Q ss_pred ccCcc
Q 022096 177 IDMNS 181 (302)
Q Consensus 177 ~~~~~ 181 (302)
..+..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 76543
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=117.37 Aligned_cols=82 Identities=20% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCCceEEE--ccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccc-cceeeec
Q 022096 200 ESPHKLYV--GNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVE-SHTVAFQ 275 (302)
Q Consensus 200 ~~~~~l~v--~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~-~~~~~~~ 275 (302)
.+.++||| +||++.+++++|+++|++||.|.+|.++. .||||||+|.+.++|.+|+ .|||+.+ .
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~------ 90 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVD------ 90 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEEC------
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcc------
Confidence 34578999 77999999999999999999999998764 2689999999999999999 9999987 1
Q ss_pred cccCCCceEEeeccccCCC
Q 022096 276 PLFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 276 ~~~~~g~~l~v~~a~~k~~ 294 (302)
....++.|.|.|+..-+.
T Consensus 91 -~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 91 -DLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp -TTSCEEECEEEEESCCCC
T ss_pred -ccCCCcEEEEEecccCcc
Confidence 011178899999875543
No 335
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=3.8e-16 Score=130.19 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=93.7
Q ss_pred CcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCC-----c---------------------c---------CCCCC
Q 022096 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSS-----V---------------------E---------EPRSR 96 (302)
Q Consensus 52 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~---------------------~---------~~~~~ 96 (302)
+++++++.....+++..+.+.+++....+......... . . .....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 47999988888888888888888766543221100000 0 0 00011
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe--eEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCc----e
Q 022096 97 ARPCELYVCNLPRSFDISELLEMFKPFGTV--LSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGR----E 170 (302)
Q Consensus 97 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v--~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~ 170 (302)
.+.++|||+|||+++|+++|+++|++||.| .+++++.+. +..+|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345789999999999999999999999999 899998774 55679999999999999999999999999876 5
Q ss_pred EEEEEc
Q 022096 171 MRVRFS 176 (302)
Q Consensus 171 l~v~~a 176 (302)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 336
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-16 Score=109.76 Aligned_cols=71 Identities=23% Similarity=0.222 Sum_probs=63.9
Q ss_pred ceEEEccCCCCCCHHH----HHHhhccCC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecc
Q 022096 203 HKLYVGNLSWAVKPED----LRNHFGRFG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQP 276 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~----L~~~f~~~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~ 276 (302)
+.|||+|||+.+++++ |+++|++|| .|.+| ++ |+|||+|.+.++|.+|+ .|||..+.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~------- 72 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVF------- 72 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSS-------
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccC-------
Confidence 3499999999999887 568999995 99988 33 89999999999999999 99999999
Q ss_pred ccCCCceEEeeccccCCC
Q 022096 277 LFPFNYVLFVSFTYSKPS 294 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~ 294 (302)
||.|+|+||..++.
T Consensus 73 ----gr~i~v~~A~~~sd 86 (96)
T 2diu_A 73 ----GNRIIVSFTPKNRE 86 (96)
T ss_dssp ----SSCCEEESSCCSCC
T ss_pred ----CceEEEEecCCCcc
Confidence 89999999988765
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1e-15 Score=126.32 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEccc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSID 178 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~~ 178 (302)
.++|||+|||+++++++|+++|++||.|..|+|+++. +|.++|||||+|.+.++|.+|++. .+..++|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhHH
Confidence 4899999999999999999999999999999999985 499999999999999999999954 45689999999998865
Q ss_pred Cc
Q 022096 179 MN 180 (302)
Q Consensus 179 ~~ 180 (302)
..
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 338
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=112.18 Aligned_cols=79 Identities=25% Similarity=0.295 Sum_probs=71.6
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEE-EEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSA-RVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v-~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
..++|||+|||+.+++++|+++|++||.|.+| .++.++.+| .|||+|.+.++|.+|+ .|||..+.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~--------- 80 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLE--------- 80 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCS---------
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 45899999999999999999999999999999 488887554 3999999999999999 89999999
Q ss_pred CCCceEEeeccccCCC
Q 022096 279 PFNYVLFVSFTYSKPS 294 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~ 294 (302)
|+.|.|.|+.++..
T Consensus 81 --g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 81 --NFTLKVAYIPDEMA 94 (96)
T ss_dssp --SCBCEEEECCCCCS
T ss_pred --CcEEEEEEcCcccc
Confidence 89999999988743
No 339
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=2.4e-15 Score=127.46 Aligned_cols=122 Identities=23% Similarity=0.269 Sum_probs=94.8
Q ss_pred CcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCcc---------------------------------CCCCCCC
Q 022096 52 PAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------------------------------EPRSRAR 98 (302)
Q Consensus 52 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~ 98 (302)
+++|+++.+...+++..+.+.+++....+........... .......
T Consensus 71 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (229)
T 2adc_A 71 KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPP 150 (229)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCC
Confidence 3789998888877888787777776554432211100000 0001233
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC-CceEEEEEc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFS 176 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a 176 (302)
.++|||+|||..+++++|+++|++|| .|..|+++.+ .+|||||+|.+.++|.+|++.|+|..+. |+.|+|.++
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a 225 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFS 225 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEEC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEe
Confidence 68999999999999999999999999 9999999764 4789999999999999999999999999 999999998
Q ss_pred cc
Q 022096 177 ID 178 (302)
Q Consensus 177 ~~ 178 (302)
.+
T Consensus 226 ~~ 227 (229)
T 2adc_A 226 KS 227 (229)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 340
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.7e-15 Score=114.24 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=65.0
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceE-EEEEeCCHHHHHHHH-HhCCccccceeeeccccCC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVF-GFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~-afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~ 280 (302)
..|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|..|+ .|||..|.+.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~--------- 90 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAG--------- 90 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTT---------
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCC---------
Confidence 45789999999999999999999999999999752 276 999999999999999 9999999831
Q ss_pred CceEEeeccccCC
Q 022096 281 NYVLFVSFTYSKP 293 (302)
Q Consensus 281 g~~l~v~~a~~k~ 293 (302)
++.|.|+||..+.
T Consensus 91 ~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 91 CCTLKIEYARPTR 103 (124)
T ss_dssp BSEEEEECCSCSC
T ss_pred CeEEEEEEecCCc
Confidence 2578888876653
No 341
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-16 Score=114.04 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 98 RPCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
..++|||+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++++. .+..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 3589999999999999999999999999999999865 78999999999999986532 1334589999999987
Q ss_pred cCcc
Q 022096 178 DMNS 181 (302)
Q Consensus 178 ~~~~ 181 (302)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 342
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.63 E-value=7.7e-16 Score=110.62 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++| .|.++++. +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---------- 66 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFR---------- 66 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEET----------
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeEC----------
Confidence 34789999999999999999999999 99999884 57899999999999999999 89999999
Q ss_pred CCceEEeeccccCC
Q 022096 280 FNYVLFVSFTYSKP 293 (302)
Q Consensus 280 ~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+..+.
T Consensus 67 -g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 67 -GKDLIVQLQPTDA 79 (88)
T ss_dssp -TEEEEEEECCCCC
T ss_pred -CcEEEEEEcCCCc
Confidence 8999999986543
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=1.4e-16 Score=125.14 Aligned_cols=83 Identities=28% Similarity=0.372 Sum_probs=71.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEE--E---EecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSAR--V---LHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~--i---~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~ 273 (302)
...++|||+|||+.+++++|+++|++||.|..+. + ++...+|+++|||||+|.+.++|.+|+ .|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 4558999999999999999999999999987641 0 111236889999999999999999999 89999999
Q ss_pred eccccCCCceEEeeccccCC
Q 022096 274 FQPLFPFNYVLFVSFTYSKP 293 (302)
Q Consensus 274 ~~~~~~~g~~l~v~~a~~k~ 293 (302)
|+.|.|.|+....
T Consensus 119 -------g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 -------GKPMVVQFARSAR 131 (143)
T ss_dssp -------TEECEEEECCCSC
T ss_pred -------CcEEEEEECCCCC
Confidence 8999999997654
No 344
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.9e-15 Score=109.91 Aligned_cols=80 Identities=21% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~ 280 (302)
..++|||+|||+.+++++|+++|++||.|.+| +.++.+|+ ||||+|.+.++|.+|+.|||..+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~----------- 70 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLG----------- 70 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEET-----------
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEEC-----------
Confidence 34799999999999999999999999999987 66666665 999999999999999999999999
Q ss_pred CceEEeeccccCCCCC
Q 022096 281 NYVLFVSFTYSKPSCR 296 (302)
Q Consensus 281 g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.++.++....
T Consensus 71 g~~l~V~~a~~~~~~~ 86 (94)
T 2e5g_A 71 GHRLRVRPREQKEFQS 86 (94)
T ss_dssp TEECCCBCSCCSCCCC
T ss_pred CEEEEEEECCcCCCCC
Confidence 8999999987665543
No 345
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.5e-16 Score=112.99 Aligned_cols=78 Identities=28% Similarity=0.417 Sum_probs=68.9
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCC-eEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCC-ccccceeeecc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGT-VVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNG-TVESHTVAFQP 276 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~-i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g-~~~~~~~~~~~ 276 (302)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+ .||| ..+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~------- 71 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELH------- 71 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEET-------
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeEC-------
Confidence 34589999999999999999999999999 6666652 4689999999999999999 8999 8898
Q ss_pred ccCCCceEEeeccccCCCC
Q 022096 277 LFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 277 ~~~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+.++...
T Consensus 72 ----g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 72 ----GKIMEVDYSVSKKLR 86 (93)
T ss_dssp ----TEECEEEECCCCCCC
T ss_pred ----CEEEEEEEccCcccc
Confidence 899999999887553
No 346
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.63 E-value=2e-15 Score=112.00 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCCceEEEccCCC-----CCCHHHHHHhhccCCCeEEEEEEecCCC-CCcceEEEEEeCCHHHHHHHH-HhCCcccccee
Q 022096 200 ESPHKLYVGNLSW-----AVKPEDLRNHFGRFGTVVSARVLHDRKG-QTTRVFGFISFSSDAERDAAL-SLNGTVESHTV 272 (302)
Q Consensus 200 ~~~~~l~v~nlp~-----~~~~~~L~~~f~~~G~i~~v~i~~~~~~-g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~ 272 (302)
.+.++|+|+||.. +-++++|++.|++||.|.+|.|++++.+ ++++|||||+|.+.++|.+|+ .|||+.|.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 4458999999963 2368999999999999999999998654 689999999999999999999 99999999
Q ss_pred eeccccCCCceEEeecccc
Q 022096 273 AFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~ 291 (302)
|+.|.|.|+..
T Consensus 83 --------Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 --------GRVVKACFYNL 93 (105)
T ss_dssp --------TEECEEEECCH
T ss_pred --------CcEEEEEEcCH
Confidence 89999999854
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1e-15 Score=110.25 Aligned_cols=78 Identities=23% Similarity=0.366 Sum_probs=62.5
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccC
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~ 279 (302)
...++|||+|||+++++++|+++|++||.|.+|+|+++ +||||||+|.+.++|.+ |+|..+..
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~---~~~~~~~~--------- 71 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS---LCGEDLII--------- 71 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH---HTTCEEEE---------
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH---HcCCCccc---------
Confidence 34589999999999999999999999999999999875 78999999999999883 45554331
Q ss_pred CCceEEeeccccCCC
Q 022096 280 FNYVLFVSFTYSKPS 294 (302)
Q Consensus 280 ~g~~l~v~~a~~k~~ 294 (302)
.|+.|.|+++.++..
T Consensus 72 ~g~~v~v~~a~~k~~ 86 (89)
T 3d2w_A 72 KGISVHISNAEPKHN 86 (89)
T ss_dssp TTEEEEEEECC----
T ss_pred CCEEEEEEEcCCCCc
Confidence 188999999987654
No 348
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=125.56 Aligned_cols=121 Identities=23% Similarity=0.273 Sum_probs=94.8
Q ss_pred cceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCcc---------------------------------CCCCCCCC
Q 022096 53 AGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVE---------------------------------EPRSRARP 99 (302)
Q Consensus 53 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~ 99 (302)
++++++.....+++..+.+.+++....+........... ........
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 789998888888888887777776654433221100000 00112346
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC-CceEEEEEcc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFG-TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG-GREMRVRFSI 177 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G-~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~a~ 177 (302)
++|||+|||..+++++|+++|++|| .|..|+++.+ .+|||||+|.+.++|.+|++.|||..+. |+.|+|.++.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 8999999999999999999999999 9999999764 3789999999999999999999999999 9999999986
Q ss_pred c
Q 022096 178 D 178 (302)
Q Consensus 178 ~ 178 (302)
+
T Consensus 196 ~ 196 (198)
T 1qm9_A 196 S 196 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 349
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.8e-15 Score=108.96 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|+ .+++++|+++|++||.|.+|.|. +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~--------- 75 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE--------- 75 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET---------
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC---------
Confidence 34589999995 89999999999999999999984 46789999999999999999 99999998
Q ss_pred CCCceEEeeccccCCCCC
Q 022096 279 PFNYVLFVSFTYSKPSCR 296 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~~ 296 (302)
|+.|.|.|+.++....
T Consensus 76 --g~~l~v~~a~~~~~~~ 91 (97)
T 1x5p_A 76 --SVQLKVNIARKQPMLD 91 (97)
T ss_dssp --TEEEEEECCSSCCCCC
T ss_pred --CeEEEEEECCCCCCCC
Confidence 8999999998876543
No 350
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.61 E-value=1.4e-15 Score=131.54 Aligned_cols=121 Identities=18% Similarity=0.165 Sum_probs=98.6
Q ss_pred CCcceeEEEeeecchhhhhhhhhcCCCCCCCCCcCCCCCccCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE
Q 022096 51 HPAGFRSVLAVVDEEAVVVEDEINGKDNVGGNEVDDDSSVEEPRSRARPCELYVCNLPRSFDISELLEMFKPFGTVLSVE 130 (302)
Q Consensus 51 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~ 130 (302)
..++++++.....+++..+...+++....+....... ....++|||+|||+.+|+++|+++|++||.|..|.
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~--------a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~ 127 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF--------ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAV 127 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE--------CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEE
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee--------cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 4579999888777777777777887665443322211 12347999999999999999999999999999999
Q ss_pred EeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCC-cC---CceEEEEEcccCc
Q 022096 131 VSRNPETGISRGCGYLTMGSINSAKNAIIALDGSD-VG---GREMRVRFSIDMN 180 (302)
Q Consensus 131 i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~-~~---g~~l~v~~a~~~~ 180 (302)
++.+ .+|.++|||||+|.+.++|.+|++.|++.. +. |+.|.|.++....
T Consensus 128 i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 128 VVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred eeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999 689999999999999999999999995544 44 9999999987653
No 351
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3.5e-15 Score=123.06 Aligned_cols=122 Identities=12% Similarity=0.118 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHh--CCCCcCCceEEEEEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCCHHHHHHhhccCC
Q 022096 150 SINSAKNAIIAL--DGSDVGGREMRVRFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVKPEDLRNHFGRFG 227 (302)
Q Consensus 150 ~~~~a~~a~~~l--~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~L~~~f~~~G 227 (302)
+.+.+..|+... ....+.+....|.............. .......++|||+|||+.+++++|+++|++||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDE--------YKNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHH--------HHHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchh--------hhhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 567778888655 33344555555554421110000000 00011237899999999999999999999999
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCCCceEEeecccc
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
.|..|+++++. +|+++|||||+|.+.++|.+|+.+.+..+. |+.|.|.++..
T Consensus 135 ~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~-----------Gr~l~V~~~~~ 186 (193)
T 2voo_A 135 QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYK-----------ETDLLILFKDD 186 (193)
T ss_dssp CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEET-----------TEECEEEETTT
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeEC-----------CEEEEEEEhHH
Confidence 99999999987 599999999999999999999955556788 88999988654
No 352
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=2.1e-15 Score=114.01 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=65.4
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFP 279 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~ 279 (302)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|+ .|||..|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~---------- 77 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFR---------- 77 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCC----------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEEC----------
Confidence 3489999999999999999999999999999999876 79999999999999999 89999999
Q ss_pred CCce-----EEeeccccCCCCC
Q 022096 280 FNYV-----LFVSFTYSKPSCR 296 (302)
Q Consensus 280 ~g~~-----l~v~~a~~k~~~~ 296 (302)
|+. +.|..+..+....
T Consensus 78 -gr~~~~~~i~v~~~~~~~~~~ 98 (115)
T 3beg_B 78 -SHEGETAYIRVKVDGPRSPSY 98 (115)
T ss_dssp -CTTSCCCBCEEEECC----CC
T ss_pred -CcEeeeEEEEeccCCCCCCCC
Confidence 555 6777766555443
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=113.58 Aligned_cols=67 Identities=21% Similarity=0.478 Sum_probs=60.8
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCC---CCcceEEEEEeCCHHHHHHHH-Hh---CCccc
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKG---QTTRVFGFISFSSDAERDAAL-SL---NGTVE 268 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~---g~~~G~afV~f~~~~~A~~Al-~l---~g~~~ 268 (302)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|+ .| ||+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 458899999999999999999999999999 888888777 799999999999999999999 77 66654
No 354
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2.9e-15 Score=126.67 Aligned_cols=79 Identities=19% Similarity=0.326 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCC---------CHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 96 RARPCELYVCNLPRSF---------DISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
....++|||+||+..+ ++++|+.+|++||+|.+|+|+. ++|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4456999999999998 7999999999999999999985 479999999999999999999999999
Q ss_pred ------------CCceEEEEEcccCc
Q 022096 167 ------------GGREMRVRFSIDMN 180 (302)
Q Consensus 167 ------------~g~~l~v~~a~~~~ 180 (302)
.|+.|.|.||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.7e-15 Score=106.95 Aligned_cols=79 Identities=18% Similarity=0.357 Sum_probs=65.6
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccceeeeccccCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTVAFQPLFPF 280 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~~~~~~~~~ 280 (302)
..++|||+|||+.+++++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|+.. +..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~----------- 66 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIK----------- 66 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEET-----------
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeC-----------
Confidence 3489999999999999999999999999999999865 689999999999999764321 22234
Q ss_pred CceEEeeccccCCCCC
Q 022096 281 NYVLFVSFTYSKPSCR 296 (302)
Q Consensus 281 g~~l~v~~a~~k~~~~ 296 (302)
++.|.|+++.++....
T Consensus 67 g~~l~v~~a~~~~~~~ 82 (88)
T 1wf0_A 67 GISVHISNAEPKHNSN 82 (88)
T ss_dssp TEEEEEECCCCCCCCC
T ss_pred CEEEEEEecCCCCCCC
Confidence 8999999998876643
No 356
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=107.42 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCCC-----------HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 022096 96 RARPCELYVCNLPRSFD-----------ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGS 164 (302)
Q Consensus 96 ~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~ 164 (302)
....++|+|+||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999954332 5899999999999999966 553 38999999999999999999999999
Q ss_pred CcCCceEEEEEcccCc
Q 022096 165 DVGGREMRVRFSIDMN 180 (302)
Q Consensus 165 ~~~g~~l~v~~a~~~~ 180 (302)
.|.||.|.|.++.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997654
No 357
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.56 E-value=1.2e-14 Score=110.77 Aligned_cols=77 Identities=26% Similarity=0.407 Sum_probs=69.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeecccc
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLF 278 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~ 278 (302)
...++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|.+|+ .|||..+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~--------- 99 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE--------- 99 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS---------
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC---------
Confidence 34589999995 69999999999999999999985 46789999999999999999 99999998
Q ss_pred CCCceEEeeccccCCCC
Q 022096 279 PFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 279 ~~g~~l~v~~a~~k~~~ 295 (302)
|+.|.|.|+..+...
T Consensus 100 --g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 100 --SVQLKVNIARKQPML 114 (121)
T ss_dssp --SCBCEEEECCSSCC-
T ss_pred --CeEEEEEEeCCCCCC
Confidence 899999999887653
No 358
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.54 E-value=1.2e-14 Score=103.85 Aligned_cols=69 Identities=26% Similarity=0.555 Sum_probs=63.5
Q ss_pred CceEEEccCCCCCCHHHHHHhhccC----C-------CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRF----G-------TVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~----G-------~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~ 270 (302)
.++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+.|||..+.
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~- 78 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ- 78 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC-
Confidence 4899999999999999999999999 8 8999988755 68999999999999999999999999
Q ss_pred eeeeccccCCCceEEee
Q 022096 271 TVAFQPLFPFNYVLFVS 287 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~ 287 (302)
|+.|.|+
T Consensus 79 ----------g~~l~V~ 85 (87)
T 2hzc_A 79 ----------GQSLKIR 85 (87)
T ss_dssp ----------TEECEEE
T ss_pred ----------CeEEEEe
Confidence 7787776
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=1.5e-14 Score=107.24 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=70.6
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHhhcCCCCeeEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCC
Q 022096 98 RPCELYVCNL--PRSFD--------ISELLEMFKPFGTVLSVEVSRNPET--GISRGCGYLTMGSINSAKNAIIALDGSD 165 (302)
Q Consensus 98 ~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~v~~v~i~~~~~~--~~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (302)
+++.|.|.|+ |.+.. +++|++.|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4588999998 33332 3689999999999999999988754 4689999999999999999999999999
Q ss_pred cCCceEEEEEccc
Q 022096 166 VGGREMRVRFSID 178 (302)
Q Consensus 166 ~~g~~l~v~~a~~ 178 (302)
+.||.|.|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999753
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=3.1e-15 Score=110.82 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=64.3
Q ss_pred EcCCCCCCCHHHHHHhh------------cCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceE
Q 022096 104 VCNLPRSFDISELLEMF------------KPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREM 171 (302)
Q Consensus 104 v~nLp~~~t~~~l~~~f------------~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l 171 (302)
+.|||+.+++++|++.| ++||.|.+|.|+++.. ++++|||||+|.+.++|.+|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 9999999999998854 7899999999999999999999999999999999
Q ss_pred EEEEc
Q 022096 172 RVRFS 176 (302)
Q Consensus 172 ~v~~a 176 (302)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.4e-14 Score=104.88 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=69.4
Q ss_pred CCCceEEEccCCCCCC-----------HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcc
Q 022096 200 ESPHKLYVGNLSWAVK-----------PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTV 267 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~-----------~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~ 267 (302)
...++|+|+||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|+ .|||+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4458999999954432 5899999999999999965 554 37999999999999999999 999999
Q ss_pred ccceeeeccccCCCceEEeeccccCCCC
Q 022096 268 ESHTVAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 268 ~~~~~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
+. |+.|.|.|+.++...
T Consensus 89 ~~-----------gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FG-----------GRQITAQAWDGTTDY 105 (112)
T ss_dssp ET-----------TEECEEEECCSCCCS
T ss_pred EC-----------CcEEEEEEeCCCCCc
Confidence 99 899999999887654
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=2.9e-14 Score=105.74 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCceEEEccC--CCCCC--------HHHHHHhhccCCCeEEEEEEecCCC--CCcceEEEEEeCCHHHHHHHH-HhCCcc
Q 022096 201 SPHKLYVGNL--SWAVK--------PEDLRNHFGRFGTVVSARVLHDRKG--QTTRVFGFISFSSDAERDAAL-SLNGTV 267 (302)
Q Consensus 201 ~~~~l~v~nl--p~~~~--------~~~L~~~f~~~G~i~~v~i~~~~~~--g~~~G~afV~f~~~~~A~~Al-~l~g~~ 267 (302)
+.+.|.|.|+ |..+. +++|++.|++||.|.+|.|++++.+ ++++|+|||+|.+.++|.+|+ .|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33443 3689999999999999999998755 468999999999999999999 999999
Q ss_pred ccceeeeccccCCCceEEeeccc
Q 022096 268 ESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 268 ~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
|+ |+.|.|+|..
T Consensus 84 f~-----------GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA-----------NRVVVTKYCD 95 (105)
T ss_dssp ET-----------TEECEEEEEC
T ss_pred eC-----------CCEEEEEEeC
Confidence 99 8999999864
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=4.3e-14 Score=106.88 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHhhcCCCCeeEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC
Q 022096 98 RPCELYVCNLPR--S---FDISELLEMFKPFGTVLSVEVSRNPE----TGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (302)
Q Consensus 98 ~~~~l~v~nLp~--~---~t~~~l~~~f~~~G~v~~v~i~~~~~----~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (302)
++++|+|+|+-. + --++||++.|++||.|.+|.|++++. ++.++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 458999999942 2 23689999999999999999998854 46788999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 022096 169 REMRVRFSI 177 (302)
Q Consensus 169 ~~l~v~~a~ 177 (302)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999974
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.7e-14 Score=120.73 Aligned_cols=90 Identities=20% Similarity=0.256 Sum_probs=68.4
Q ss_pred CCCceEEEccCCCCC---------CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 200 ESPHKLYVGNLSWAV---------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~---------~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
...++|||+||+..+ ++++|+++|++||.|.+|+|+. ++|||||+|.+.++|+.|+ .|||+.|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 345899999999998 7999999999999999999985 4689999999999999999 99999991
Q ss_pred ce-eeeccccCCCceEEeeccccCCCC
Q 022096 270 HT-VAFQPLFPFNYVLFVSFTYSKPSC 295 (302)
Q Consensus 270 ~~-~~~~~~~~~g~~l~v~~a~~k~~~ 295 (302)
.. -..-.--..|+.|.|.||..++.+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 00 000000001899999999876654
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=1.2e-14 Score=107.68 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=62.2
Q ss_pred EccCCCCCCHHHHHHhh------------ccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceee
Q 022096 207 VGNLSWAVKPEDLRNHF------------GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273 (302)
Q Consensus 207 v~nlp~~~~~~~L~~~f------------~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~ 273 (302)
+.||++.+++++|++.| ++||.|.+|.|.++. +++++|||||+|.+.++|.+|+ .|||+.+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---- 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---- 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEET----
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEEC----
Confidence 56777777887777666 999999999999986 4899999999999999999999 99999999
Q ss_pred eccccCCCceEEeecc
Q 022096 274 FQPLFPFNYVLFVSFT 289 (302)
Q Consensus 274 ~~~~~~~g~~l~v~~a 289 (302)
|+.|.|.|+
T Consensus 95 -------Gr~i~v~~s 103 (104)
T 1jmt_A 95 -------GQPIHAELS 103 (104)
T ss_dssp -------TEECCEEEC
T ss_pred -------CEEEEEEEc
Confidence 888888875
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.2e-13 Score=104.43 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=68.6
Q ss_pred CCceEEEccCC--CCC---CHHHHHHhhccCCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 201 SPHKLYVGNLS--WAV---KPEDLRNHFGRFGTVVSARVLHDRK----GQTTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 201 ~~~~l~v~nlp--~~~---~~~~L~~~f~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
+.++|+|.|+- .++ .+++|++.|++||.|.+|.|++++. +++++|++||+|.+.++|.+|+ .|||+.|+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 45889999984 222 3689999999999999999999864 4678899999999999999999 99999999
Q ss_pred eeeeccccCCCceEEeeccc
Q 022096 271 TVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~~a~ 290 (302)
|+.|.|+|..
T Consensus 98 ----------GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ----------GRKVVAEVYD 107 (118)
T ss_dssp ----------TEECEEEEEC
T ss_pred ----------CcEEEEEEcC
Confidence 8899998864
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=95.74 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=62.5
Q ss_pred CEEEEcCCC-------CCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEE
Q 022096 100 CELYVCNLP-------RSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMR 172 (302)
Q Consensus 100 ~~l~v~nLp-------~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~ 172 (302)
.+|.|.-.. ..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|++|++.++ .+.|+.|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEE
Confidence 456666544 458999999999999999999998 3589999999999999999998744 46899999
Q ss_pred EEEcccCc
Q 022096 173 VRFSIDMN 180 (302)
Q Consensus 173 v~~a~~~~ 180 (302)
|.++..+.
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99987654
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-12 Score=93.93 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred CCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeeccc
Q 022096 212 WAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSFTY 290 (302)
Q Consensus 212 ~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~a~ 290 (302)
..+++++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|+ .+++ +. ++.|+|+|+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~-----------g~~l~V~~a~ 88 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LV-----------DNPLKISWLE 88 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CS-----------SSBCEEECSS
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CC-----------CCeEEEEEcc
Confidence 568999999999999999999997 468999999999999999999 7555 33 7899999998
Q ss_pred cCCCC
Q 022096 291 SKPSC 295 (302)
Q Consensus 291 ~k~~~ 295 (302)
.+.+.
T Consensus 89 ~~~~~ 93 (100)
T 2d9o_A 89 GQPQD 93 (100)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=8.2e-13 Score=117.48 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=65.2
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCc---CCc-
Q 022096 96 RARPCELYVCN--LPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDV---GGR- 169 (302)
Q Consensus 96 ~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~- 169 (302)
..+.++|||+| |++.+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||..+ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34458999999 578999999999999999999987753 479999999999999999999999988 356
Q ss_pred -eEEEEEcc
Q 022096 170 -EMRVRFSI 177 (302)
Q Consensus 170 -~l~v~~a~ 177 (302)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 56677763
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.35 E-value=3.3e-12 Score=95.84 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCC----------HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcC
Q 022096 98 RPCELYVCNLPRSFD----------ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVG 167 (302)
Q Consensus 98 ~~~~l~v~nLp~~~t----------~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 167 (302)
.++.|.+.|+=.... ++||++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|++.|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 457899999853221 35789999999999999997653 5899999999999999999999999999
Q ss_pred CceEEEEEccc
Q 022096 168 GREMRVRFSID 178 (302)
Q Consensus 168 g~~l~v~~a~~ 178 (302)
||.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=1.8e-12 Score=115.35 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCCceEEEcc--CCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 200 ESPHKLYVGN--LSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 200 ~~~~~l~v~n--lp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
.+..+|||+| |++.+++++|+++|++||.|.+|.+.. +||||||+|.+.++|++|+ .|||+.+.
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 4568999999 579999999999999999999987753 4789999999999999999 99999873
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=5.1e-12 Score=94.76 Aligned_cols=76 Identities=14% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCceEEEccCCCCC----------CHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCcccc
Q 022096 201 SPHKLYVGNLSWAV----------KPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVES 269 (302)
Q Consensus 201 ~~~~l~v~nlp~~~----------~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~ 269 (302)
+.++|.|.|+=..- .+++|++.|++||.|.+|.|.++. .+|+|||+|.+.++|.+|+ .|||+.|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34789999984322 136899999999999999997653 5899999999999999999 99999999
Q ss_pred ceeeeccccCCCceEEeecccc
Q 022096 270 HTVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 270 ~~~~~~~~~~~g~~l~v~~a~~ 291 (302)
|+.|.|.|+..
T Consensus 82 -----------GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 -----------GKMITAAYVPL 92 (114)
T ss_dssp -----------TEECEEEEECH
T ss_pred -----------CEEEEEEEEcH
Confidence 89999998743
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=1.2e-10 Score=87.46 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCCcCCceEE
Q 022096 97 ARPCELYVCNLPRS-FDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGS-INSAKNAIIALD--GSDVGGREMR 172 (302)
Q Consensus 97 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--~~~~~g~~l~ 172 (302)
..+..|+|+||+.. +++++|+++|++||+|..|.++++.. .|||+|.+ .++|..|++.++ +..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 45689999999999 99999999999999999999998755 59999999 899999999994 7778999999
Q ss_pred EEEccc
Q 022096 173 VRFSID 178 (302)
Q Consensus 173 v~~a~~ 178 (302)
+.....
T Consensus 90 ~evL~G 95 (121)
T 1owx_A 90 WEVLEG 95 (121)
T ss_dssp EEECCH
T ss_pred EEECCC
Confidence 987653
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2e-10 Score=81.07 Aligned_cols=72 Identities=22% Similarity=0.305 Sum_probs=61.5
Q ss_pred CCEEEEcCCCC----CCCH----HHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCce
Q 022096 99 PCELYVCNLPR----SFDI----SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGRE 170 (302)
Q Consensus 99 ~~~l~v~nLp~----~~t~----~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 170 (302)
..||+|.-.+. ..-. .+|.+.|.+||+|..++++.++ +||+|.+.++|.+|++ |||..+.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 46888887762 2322 5789999999999999999873 8999999999999996 9999999999
Q ss_pred EEEEEcccC
Q 022096 171 MRVRFSIDM 179 (302)
Q Consensus 171 l~v~~a~~~ 179 (302)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.2e-10 Score=80.00 Aligned_cols=73 Identities=23% Similarity=0.322 Sum_probs=62.0
Q ss_pred CCceEEEccCC----CCCCH----HHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCcccccee
Q 022096 201 SPHKLYVGNLS----WAVKP----EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESHTV 272 (302)
Q Consensus 201 ~~~~l~v~nlp----~~~~~----~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~~~ 272 (302)
+..+|+|.-.+ .++-+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|+.|||..++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~--- 74 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELL--- 74 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEET---
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeC---
Confidence 34678777766 23333 6799999999999999999985 89999999999999999999999
Q ss_pred eeccccCCCceEEeeccccC
Q 022096 273 AFQPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 273 ~~~~~~~~g~~l~v~~a~~k 292 (302)
|+.|+|+++++.
T Consensus 75 --------Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 --------NRTITIALKSPS 86 (91)
T ss_dssp --------TEEEEEEECCCS
T ss_pred --------CeEEEEEeCCCC
Confidence 899999998754
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=4.8e-10 Score=84.24 Aligned_cols=65 Identities=18% Similarity=0.061 Sum_probs=57.9
Q ss_pred cCCCceEEEccCCCC-CCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCC-HHHHHHHH-HhC--Ccccc
Q 022096 199 YESPHKLYVGNLSWA-VKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSS-DAERDAAL-SLN--GTVES 269 (302)
Q Consensus 199 ~~~~~~l~v~nlp~~-~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~-~~~A~~Al-~l~--g~~~~ 269 (302)
...+..|+|+||++. +++++|+++|++||.|..|.+.++.. .|||+|.+ ..+|..|+ .|| |..|.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 355689999999999 99999999999999999999999875 49999999 89999999 884 66676
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.00 E-value=1e-09 Score=92.15 Aligned_cols=67 Identities=21% Similarity=0.143 Sum_probs=60.7
Q ss_pred CCHHHHHHhhcCCCCeeEEEEeeCC----CCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEcc
Q 022096 111 FDISELLEMFKPFGTVLSVEVSRNP----ETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFSI 177 (302)
Q Consensus 111 ~t~~~l~~~f~~~G~v~~v~i~~~~----~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a~ 177 (302)
-.+++|++.|++||.|.++.|+++. .++.++|++||+|.+.++|.+|++.|||..+.||.|.|.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998553 455899999999999999999999999999999999999975
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.95 E-value=1.5e-09 Score=91.20 Aligned_cols=66 Identities=20% Similarity=0.283 Sum_probs=58.7
Q ss_pred CCHHHHHHhhccCCCeEEEEEEecCC----CCCcceEEEEEeCCHHHHHHHH-HhCCccccceeeeccccCCCceEEeec
Q 022096 214 VKPEDLRNHFGRFGTVVSARVLHDRK----GQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAFQPLFPFNYVLFVSF 288 (302)
Q Consensus 214 ~~~~~L~~~f~~~G~i~~v~i~~~~~----~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~~~~~~~g~~l~v~~ 288 (302)
-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|+ .|||+.++ ||.|.++|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-----------gr~i~~~~ 209 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-----------GRKVVAEV 209 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS-----------SSBCEEEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC-----------CeEEEEEE
Confidence 35689999999999999999996643 4589999999999999999999 99999999 88888888
Q ss_pred cc
Q 022096 289 TY 290 (302)
Q Consensus 289 a~ 290 (302)
..
T Consensus 210 ~~ 211 (222)
T 3dxb_A 210 YD 211 (222)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=2.2e-09 Score=76.11 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCceEEEccCCCC-----CCH----HHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccc
Q 022096 200 ESPHKLYVGNLSWA-----VKP----EDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270 (302)
Q Consensus 200 ~~~~~l~v~nlp~~-----~~~----~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~ 270 (302)
.+..+|+|.-++.. +-+ .+|.+.|++||.|..+++..|+ +||+|.+.++|.+|+.|||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~- 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVK- 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEET-
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeC-
Confidence 34478999888643 322 5699999999999999999985 99999999999999999999999
Q ss_pred eeeeccccCCCceEEeecccc
Q 022096 271 TVAFQPLFPFNYVLFVSFTYS 291 (302)
Q Consensus 271 ~~~~~~~~~~g~~l~v~~a~~ 291 (302)
|+.|+|+++.+
T Consensus 84 ----------Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 ----------GRAVKISGPSS 94 (95)
T ss_dssp ----------TEEEEEECCCC
T ss_pred ----------CeEEEEeccCC
Confidence 89999998754
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.4e-09 Score=77.12 Aligned_cols=70 Identities=21% Similarity=0.354 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCC------CCH---HHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC
Q 022096 98 RPCELYVCNLPRS------FDI---SELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG 168 (302)
Q Consensus 98 ~~~~l~v~nLp~~------~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 168 (302)
+..||+|.-++.. .++ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+||+ |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3478999888743 221 4689999999999999999873 9999999999999996 99999999
Q ss_pred ceEEEEEc
Q 022096 169 REMRVRFS 176 (302)
Q Consensus 169 ~~l~v~~a 176 (302)
|.|+|.+.
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999864
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.8e-08 Score=72.78 Aligned_cols=71 Identities=20% Similarity=0.149 Sum_probs=64.1
Q ss_pred CCCceEEEccCCCCCCHHHHHHhhccC-----CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceee
Q 022096 200 ESPHKLYVGNLSWAVKPEDLRNHFGRF-----GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVA 273 (302)
Q Consensus 200 ~~~~~l~v~nlp~~~~~~~L~~~f~~~-----G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~ 273 (302)
+..++|-+-|||..+++..|+.+.+++ |.|.+|.+..|-.+ |+|+|.|...|.+|. .|||..|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G------Aivef~d~~~AgKasLaL~G~ef~---- 88 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG------AIIIFRDSKFAAKMLMILNGSQFQ---- 88 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE------EEEECSCHHHHHHHHHHHSSEEET----
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc------eEEEEccchhhHHHHhhcCCeeec----
Confidence 345899999999999999999999999 99999999998643 999999999999998 99999999
Q ss_pred eccccCCCceEEee
Q 022096 274 FQPLFPFNYVLFVS 287 (302)
Q Consensus 274 ~~~~~~~g~~l~v~ 287 (302)
|+.|++.
T Consensus 89 -------gr~Lr~g 95 (117)
T 2l9w_A 89 -------GKVIRSG 95 (117)
T ss_dssp -------TEEEEEE
T ss_pred -------CeEEEec
Confidence 6777764
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.48 E-value=5.4e-07 Score=65.12 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC-----CCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPF-----GTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
.++|-+-|||-.+++..|+.+.+++ |.+..|.++.|.. -|+|+|.+...|-+|.=.|+|.+|.||+|+|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 4899999999999999999999999 9999999998743 5999999999999999899999999999999
Q ss_pred EEc
Q 022096 174 RFS 176 (302)
Q Consensus 174 ~~a 176 (302)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 754
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=8.8e-06 Score=58.31 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=71.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcC-----CCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 99 PCELYVCNLPRSFDISELLEMFKP-----FGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~-----~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
..+|.|.|||..+.++.|.-+|+. -|+|..+.... +-|+|+|.+.+.|++.+ .-..+.|.|..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeEEEE
Confidence 479999999999999999999976 25888887754 36999999999999999 45578899999999
Q ss_pred EEcccCcccccchhhccCCCCcccccCCCceEEEccCCCCCC
Q 022096 174 RFSIDMNSRTRNAEALISPPKKIFVYESPHKLYVGNLSWAVK 215 (302)
Q Consensus 174 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 215 (302)
....... ..+|++.||++.++
T Consensus 79 ~P~~~~~---------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA---------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC---------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC---------------------cceEeeecCCCCCC
Confidence 8764432 26788999988765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.78 E-value=3.8e-05 Score=55.26 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=63.5
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEE
Q 022096 99 PCELYVCNLPRSF-D----ISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRV 173 (302)
Q Consensus 99 ~~~l~v~nLp~~~-t----~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v 173 (302)
+.+|+|.||+.++ + .+.++++|..|+++......+.-. -..|.|.+.++|.+|-..||+..+.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4799999998765 2 257899999999988887776532 4789999999999999999999999999999
Q ss_pred EEccc
Q 022096 174 RFSID 178 (302)
Q Consensus 174 ~~a~~ 178 (302)
.++..
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99973
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=8.7e-05 Score=52.47 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=56.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCC--cccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGI--SRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
++|.|++||+.+||+++.+.++....+.....+..+.+.. .-.-|||.|.+.+++....+.++|+.|
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 5799999999999999999999998888777766543322 334599999999999999999999998
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.64 E-value=0.00016 Score=53.43 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=52.3
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCCccccc
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNGTVESH 270 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g~~~~~ 270 (302)
.+-|.|.+.|... ...+...|++||.|.+...... .-+-.|+|.++.+|++||..||+.+++
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~kNG~ii~g 85 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSKDGRIFGE 85 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHhCCeEecC
Confidence 4789999999885 6788899999999998876222 238999999999999999999999984
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.60 E-value=0.00037 Score=49.31 Aligned_cols=55 Identities=16% Similarity=0.404 Sum_probs=46.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (302)
.+.++| ++|..+...||.++|+.||-|. |+.+-|. .|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 366777 9999999999999999999544 7777763 69999999999999997653
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=0.0013 Score=47.02 Aligned_cols=55 Identities=27% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCceEEEccCCCCCCHHHHHHhhcc---C--CCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHh
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGR---F--GTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSL 263 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~---~--G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l 263 (302)
...+|.|.|||..++++.|.-+|+. - |.|..|....+ -|+|+|.+.+.|++.|+-
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~--------~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC--------GGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT--------EEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC--------cEEEEEcChHHHHHHhcC
Confidence 3478999999999999999999986 2 46988877552 399999999999999944
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.41 E-value=0.00043 Score=49.77 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCceEEEccCCCCC-C----HHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhCCccccceeee
Q 022096 201 SPHKLYVGNLSWAV-K----PEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLNGTVESHTVAF 274 (302)
Q Consensus 201 ~~~~l~v~nlp~~~-~----~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~g~~~~~~~~~ 274 (302)
-+++|+|.||+.++ . .+.++++|..|+.+.....++.= . -..|.|.++++|.+|. .||+..+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--R----Rirv~F~~~~~A~~AR~~Lh~~~f~----- 72 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--K----RVRINFSNPLSAADARLRLHKTEFL----- 72 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--T----EEEEECSSTTHHHHHHHTSTTSEET-----
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--e----EEEEEeCChHHHHHHHHHhccceec-----
Confidence 35889999998765 2 25788999999988777666652 2 3899999999999999 99999999
Q ss_pred ccccCCCceEEeeccccC
Q 022096 275 QPLFPFNYVLFVSFTYSK 292 (302)
Q Consensus 275 ~~~~~~g~~l~v~~a~~k 292 (302)
|+.++|=|+..-
T Consensus 73 ------g~~~r~YFgq~~ 84 (104)
T 1wey_A 73 ------GKEMKLYFAQTL 84 (104)
T ss_dssp ------TEECEEECCCCS
T ss_pred ------CceeEEEecCCC
Confidence 788888887643
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.39 E-value=0.0011 Score=46.70 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=56.7
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ--TTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
.+|.|++||+.++++++.+.++....+........+.+. ..-.-|||.|.+.+++..-. .+||..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 479999999999999999999999888777777765332 23456999999999998888 999998773
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.17 E-value=0.0012 Score=48.75 Aligned_cols=71 Identities=23% Similarity=0.256 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCC-ceEEEEEcc
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGG-REMRVRFSI 177 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~a~ 177 (302)
.+.|.|-+.|... ...+...|++||.|.+..... ......|.|.+..+|++|| ..||..|.| -.|-|.+..
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECC
Confidence 3789999999985 567888999999999887622 2348999999999999999 789999975 666776654
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.05 E-value=0.001 Score=47.20 Aligned_cols=54 Identities=19% Similarity=0.419 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (302)
+.++| ++|..+...||..+|+.|| -..|+.+-|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999 3446777663 69999999999999998764
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.95 E-value=0.0037 Score=44.22 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=44.6
Q ss_pred CceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-Hh
Q 022096 202 PHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SL 263 (302)
Q Consensus 202 ~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l 263 (302)
.+.++| +.|.++...||.++|+.||.| .|+.+-|. -|||.|.+++.|..|+ .+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 356777 999999999999999999964 46666663 4999999999999999 55
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.88 E-value=0.00093 Score=47.46 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=50.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCCc
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETG--ISRGCGYLTMGSINSAKNAIIALDGSDV 166 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~~~~~ 166 (302)
-+|.|+.||+.+||+++.+.++.+=++.....+....+. ..-.-|||.|.+.++.....+.++|..|
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 579999999999999999888876554333333222211 1223489999999999999999999988
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.42 E-value=0.0051 Score=43.61 Aligned_cols=53 Identities=26% Similarity=0.387 Sum_probs=44.1
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~ 264 (302)
+.++| +.|.++...||.++|+.||.| .|..+-|. -|||.|.+++.|..|+ .+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999999999943 46666663 4999999999999999 554
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.75 E-value=0.013 Score=41.48 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=49.8
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCC--CcceEEEEEeCCHHHHHHHH-HhCCccccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQ--TTRVFGFISFSSDAERDAAL-SLNGTVESH 270 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g--~~~G~afV~f~~~~~A~~Al-~l~g~~~~~ 270 (302)
-+|.|+.||+.+|++++.+.++..-.+........+.+. ..-.-|||.|.+.++...-. ..+|..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 579999999999999999888776554333333322111 11234899999999999888 999999773
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.75 E-value=0.0072 Score=45.27 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=49.0
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEE-EEEEecC--------CC----C-CcceEEEEEeCCHHHHHHHHHhCCccc
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVS-ARVLHDR--------KG----Q-TTRVFGFISFSSDAERDAALSLNGTVE 268 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~-v~i~~~~--------~~----g-~~~G~afV~f~~~~~A~~Al~l~g~~~ 268 (302)
.-|.|.|.|.... ..+.+.|++||.|.+ +...++. +. . ....|..|+|.++.+|.+||.-||+.|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 5688888976554 578889999999765 2211100 00 0 124589999999999999999999999
Q ss_pred cce
Q 022096 269 SHT 271 (302)
Q Consensus 269 ~~~ 271 (302)
++.
T Consensus 87 ~G~ 89 (132)
T 3p3d_A 87 NGV 89 (132)
T ss_dssp TTE
T ss_pred CcE
Confidence 964
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.66 E-value=0.0056 Score=56.19 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAI 158 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~ 158 (302)
.|.|+|. .|..+++.+|.+.|++||+|.++.+.++. | -||.|+|.+.+++..++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHH
Confidence 3899997 79999999999999999999999887652 2 59999999999999776
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.52 E-value=0.007 Score=55.57 Aligned_cols=59 Identities=5% Similarity=0.140 Sum_probs=43.3
Q ss_pred CCceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHhCC
Q 022096 201 SPHKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAALSLNG 265 (302)
Q Consensus 201 ~~~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al~l~g 265 (302)
..++|+|. .|..+++.+|.++|++||.|.++....+. | -||.|+|.+.+++..++...+
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhccC
Confidence 34789997 79999999999999999999999776653 3 499999999999988874333
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.34 E-value=0.017 Score=43.25 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=55.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeeC--------CCCC-----CcccEEEEEeCCHHHHHHHHHHhCCCC
Q 022096 100 CELYVCNLPRSFDISELLEMFKPFGTVLSV-EVSRN--------PETG-----ISRGCGYLTMGSINSAKNAIIALDGSD 165 (302)
Q Consensus 100 ~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v-~i~~~--------~~~~-----~~~g~afv~f~~~~~a~~a~~~l~~~~ 165 (302)
..|.|-+.|.+.. ..+.+.|++||.|.+- .+.+. +... .......|+|.+..+|.+|| ..||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCeE
Confidence 5788999977655 4567789999998762 21110 0000 12456799999999999999 889999
Q ss_pred cCCceEEEEEcc
Q 022096 166 VGGREMRVRFSI 177 (302)
Q Consensus 166 ~~g~~l~v~~a~ 177 (302)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887763
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.75 E-value=1.6 Score=40.64 Aligned_cols=56 Identities=16% Similarity=0.371 Sum_probs=45.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDG 163 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~ 163 (302)
...++|+ +|..+...+|.++|+.||.+ +|+.+-+ ..|||.|.+.+.|..+++.+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3567776 99999999999999999954 4555544 2699999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=79.09 E-value=5.6 Score=36.92 Aligned_cols=53 Identities=26% Similarity=0.379 Sum_probs=42.5
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH-HhC
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL-SLN 264 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al-~l~ 264 (302)
..++++ +|..+...+|.+.|+.||.+ +|+.+-+. .|||.|.+.+.|..++ .++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 555665 88899999999999999964 45554442 5999999999999999 765
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.06 E-value=14 Score=24.11 Aligned_cols=58 Identities=9% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCHHHHHHhhcCCC-----CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEEc
Q 022096 110 SFDISELLEMFKPFG-----TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRFS 176 (302)
Q Consensus 110 ~~t~~~l~~~f~~~G-----~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~a 176 (302)
.++..+|..++..-+ .|-.|.+..+ |.||+-.. +.+.++++.|++..+.|+.+.|+.+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 355567777665433 4556766443 78998876 5678888899999999999998775
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.10 E-value=69 Score=24.87 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=38.8
Q ss_pred ceEEEccCCC-C--------CCHHHHHHhh--ccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHH-HHHH
Q 022096 203 HKLYVGNLSW-A--------VKPEDLRNHF--GRFGTVVSARVLHDRKGQTTRVFGFISFSSDAER-DAAL 261 (302)
Q Consensus 203 ~~l~v~nlp~-~--------~~~~~L~~~f--~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A-~~Al 261 (302)
-++.|-|+|. . .+..+|++.| +.|..++ |+.+.++. -++|+|.|+|...-.. ..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 3566777775 2 3447899977 9997755 77777754 3789999999875432 4444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=41.69 E-value=81 Score=21.49 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=41.6
Q ss_pred ceEEEccCCCCCCHHHHHHhhccCCCeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 203 HKLYVGNLSWAVKPEDLRNHFGRFGTVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 203 ~~l~v~nlp~~~~~~~L~~~f~~~G~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
+-+.|-|+|..+-..++.-.....|---.+..+-. -|.+.|.+.++...|+
T Consensus 13 clikiinipqgtlkaevvlavrhlgyefycdyidg--------qamirfqnsdeqrlai 63 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG--------QAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS--------CEEEEESSHHHHHHHH
T ss_pred cEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC--------eeEEEecCChHHHHHH
Confidence 67889999999988888877777787666655433 2999999999999998
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=40.78 E-value=62 Score=25.12 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=35.4
Q ss_pred CEEEEcCCCC-C--------CCHHHHHHhh--cCCCCeeEEEEeeCCCCCCcccEEEEEeCCH
Q 022096 100 CELYVCNLPR-S--------FDISELLEMF--KPFGTVLSVEVSRNPETGISRGCGYLTMGSI 151 (302)
Q Consensus 100 ~~l~v~nLp~-~--------~t~~~l~~~f--~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~ 151 (302)
=.+.|-|+|. . ....+|++.| ..|.++. |+.+.++ ..+.|++.|.|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 3567778886 2 3347899977 9998866 6666653 34889999999874
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.53 E-value=96 Score=20.99 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=38.9
Q ss_pred EEEccCCCCCCHHHHHHhhcc-CC-CeEEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 022096 205 LYVGNLSWAVKPEDLRNHFGR-FG-TVVSARVLHDRKGQTTRVFGFISFSSDAERDAAL 261 (302)
Q Consensus 205 l~v~nlp~~~~~~~L~~~f~~-~G-~i~~v~i~~~~~~g~~~G~afV~f~~~~~A~~Al 261 (302)
-++.-++...+..+|++.++. || .|.+|....-+. | .--|+|.+....+|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-G--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-S--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-C--ceEEEEEcCCCCcHHHHH
Confidence 344557889999999999976 56 388887776542 2 225999998877776544
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.06 E-value=86 Score=21.31 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=24.8
Q ss_pred CeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 022096 125 TVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALD 162 (302)
Q Consensus 125 ~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 162 (302)
+|.++.++.. ..||.||++...++...+++...
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCT
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCC
Confidence 3666666542 78999999999998888885443
No 409
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=26.02 E-value=99 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.2
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
.|++|+|.+-...|+-+|||=|.|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 48889888877778999999999975
No 410
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=21.96 E-value=1.3e+02 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
.|.+|+|.+-...|+-+|||=|.|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58889888877678999999999975
No 411
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.62 E-value=1.3e+02 Score=21.18 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.6
Q ss_pred CeEEEEEEecCCCCCcceEEEEEeCC
Q 022096 228 TVVSARVLHDRKGQTTRVFGFISFSS 253 (302)
Q Consensus 228 ~i~~v~i~~~~~~g~~~G~afV~f~~ 253 (302)
.|++|+|.+-...|+-+|||=|.|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 47888888777778899999999975
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.17 E-value=2.1e+02 Score=19.40 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=48.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHHHhCCCCcCCceEEEEE
Q 022096 99 PCELYVCNLPRSFDISELLEMFKPFGTVLSVEVSRNPETGISRGCGYLTMGSINSAKNAIIALDGSDVGGREMRVRF 175 (302)
Q Consensus 99 ~~~l~v~nLp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 175 (302)
.+-|-|-|+|..+-..++.-.....|---.|..+- |.|.|.|.+.++-..|++.|-+. .+.+|.++.
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 37788999999988888777777777655665543 46999999999999999876322 234445443
Done!