Query 022097
Match_columns 302
No_of_seqs 141 out of 304
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 08:00:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05705 DUF829: Eukaryotic pr 100.0 3.1E-28 6.8E-33 220.0 11.1 141 13-159 91-240 (240)
2 KOG2521 Uncharacterized conser 99.9 5.4E-26 1.2E-30 219.6 6.2 126 97-223 225-350 (350)
3 PF00326 Peptidase_S9: Prolyl 97.5 0.00025 5.4E-09 62.4 7.0 69 96-164 143-211 (213)
4 TIGR01738 bioH putative pimelo 97.0 0.0016 3.4E-08 55.5 6.1 60 95-159 186-245 (245)
5 TIGR02427 protocat_pcaD 3-oxoa 96.6 0.0046 9.9E-08 52.7 6.0 61 95-160 191-251 (251)
6 TIGR03611 RutD pyrimidine util 96.6 0.0057 1.2E-07 52.9 6.3 61 95-160 196-256 (257)
7 PRK11460 putative hydrolase; P 96.5 0.02 4.2E-07 52.1 9.8 77 96-177 147-223 (232)
8 PLN02652 hydrolase; alpha/beta 96.4 0.0081 1.8E-07 59.4 7.1 68 95-164 322-389 (395)
9 PRK00175 metX homoserine O-ace 96.4 0.012 2.6E-07 57.1 8.2 68 95-163 307-375 (379)
10 PHA02857 monoglyceride lipase; 96.4 0.01 2.2E-07 53.7 7.0 65 95-162 207-273 (276)
11 PRK10749 lysophospholipase L2; 96.3 0.013 2.9E-07 55.4 7.6 67 95-161 257-328 (330)
12 PLN03087 BODYGUARD 1 domain co 96.3 0.0081 1.8E-07 61.3 6.3 63 96-162 417-479 (481)
13 PF02230 Abhydrolase_2: Phosph 96.2 0.019 4.1E-07 51.1 7.9 61 97-162 155-215 (216)
14 TIGR02240 PHA_depoly_arom poly 96.2 0.014 3.1E-07 53.1 6.7 62 95-162 205-266 (276)
15 COG1506 DAP2 Dipeptidyl aminop 96.1 0.023 4.9E-07 59.3 8.9 74 91-164 545-618 (620)
16 PRK06765 homoserine O-acetyltr 96.1 0.019 4.1E-07 56.8 7.9 66 95-161 321-387 (389)
17 PLN02965 Probable pheophorbida 96.1 0.015 3.3E-07 52.4 6.7 61 96-161 192-252 (255)
18 PRK10566 esterase; Provisional 96.1 0.027 5.8E-07 50.2 8.1 61 97-162 186-248 (249)
19 TIGR03056 bchO_mg_che_rel puta 96.0 0.017 3.8E-07 51.1 6.5 60 96-160 219-278 (278)
20 TIGR01392 homoserO_Ac_trn homo 95.9 0.023 5.1E-07 54.2 7.4 65 95-160 286-351 (351)
21 PLN02679 hydrolase, alpha/beta 95.8 0.033 7.2E-07 53.6 8.0 66 96-162 291-357 (360)
22 PLN02824 hydrolase, alpha/beta 95.8 0.026 5.6E-07 51.8 6.7 62 95-161 232-293 (294)
23 PF01738 DLH: Dienelactone hyd 95.7 0.052 1.1E-06 48.0 8.0 69 95-163 143-211 (218)
24 PRK03592 haloalkane dehalogena 95.6 0.033 7.1E-07 51.1 6.8 66 95-164 226-291 (295)
25 TIGR01250 pro_imino_pep_2 prol 95.6 0.036 7.8E-07 48.4 6.7 60 95-160 229-288 (288)
26 PRK07581 hypothetical protein; 95.5 0.041 9E-07 51.9 7.2 64 96-164 274-338 (339)
27 PLN02298 hydrolase, alpha/beta 95.4 0.04 8.6E-07 51.7 6.5 65 95-162 249-317 (330)
28 PRK08775 homoserine O-acetyltr 95.3 0.024 5.2E-07 53.9 5.0 65 95-163 275-340 (343)
29 TIGR03343 biphenyl_bphD 2-hydr 95.3 0.049 1.1E-06 48.9 6.6 61 95-160 221-281 (282)
30 PRK06489 hypothetical protein; 94.9 0.06 1.3E-06 51.6 6.5 62 95-162 290-357 (360)
31 PRK03204 haloalkane dehalogena 94.9 0.06 1.3E-06 49.9 6.3 58 97-159 227-285 (286)
32 PRK10349 carboxylesterase BioH 94.8 0.068 1.5E-06 47.7 5.9 61 95-160 194-254 (256)
33 PRK11126 2-succinyl-6-hydroxy- 94.7 0.083 1.8E-06 46.3 6.3 56 95-161 186-241 (242)
34 PRK14875 acetoin dehydrogenase 94.7 0.048 1E-06 51.3 5.1 59 95-161 312-370 (371)
35 TIGR03695 menH_SHCHC 2-succiny 94.7 0.093 2E-06 44.3 6.3 60 95-160 192-251 (251)
36 TIGR01607 PST-A Plasmodium sub 94.5 0.12 2.6E-06 49.5 7.4 63 96-160 269-331 (332)
37 PLN02385 hydrolase; alpha/beta 94.5 0.099 2.1E-06 49.8 6.6 65 95-162 277-345 (349)
38 PRK00870 haloalkane dehalogena 94.4 0.079 1.7E-06 48.9 5.7 64 95-161 237-300 (302)
39 PLN03084 alpha/beta hydrolase 94.3 0.14 3E-06 50.6 7.5 60 95-160 323-382 (383)
40 PRK10673 acyl-CoA esterase; Pr 94.3 0.13 2.8E-06 45.3 6.6 62 95-161 193-254 (255)
41 PLN02578 hydrolase 94.3 0.13 2.8E-06 49.3 6.9 60 95-160 294-353 (354)
42 PF12697 Abhydrolase_6: Alpha/ 94.2 0.073 1.6E-06 44.2 4.5 54 96-154 175-228 (228)
43 COG2267 PldB Lysophospholipase 94.0 0.15 3.3E-06 48.5 6.9 68 95-164 226-296 (298)
44 PLN02872 triacylglycerol lipas 94.0 0.15 3.4E-06 50.6 7.1 64 97-163 325-390 (395)
45 PF07859 Abhydrolase_3: alpha/ 93.6 0.096 2.1E-06 45.5 4.3 44 99-144 168-211 (211)
46 PF03583 LIP: Secretory lipase 93.2 0.31 6.7E-06 46.3 7.4 56 97-152 219-275 (290)
47 KOG1454 Predicted hydrolase/ac 93.1 0.32 6.9E-06 47.1 7.5 60 98-162 265-324 (326)
48 PLN02211 methyl indole-3-aceta 92.9 0.31 6.6E-06 45.2 6.7 59 97-161 211-269 (273)
49 PF00561 Abhydrolase_1: alpha/ 92.7 0.16 3.5E-06 43.2 4.3 57 95-156 173-229 (230)
50 PRK10162 acetyl esterase; Prov 92.5 0.49 1.1E-05 45.0 7.8 44 98-143 249-292 (318)
51 PRK05855 short chain dehydroge 92.4 0.18 3.9E-06 50.2 4.8 62 96-163 232-293 (582)
52 TIGR01836 PHA_synth_III_C poly 92.3 0.32 6.9E-06 46.5 6.2 63 96-161 285-349 (350)
53 PLN02894 hydrolase, alpha/beta 92.1 0.46 1E-05 46.9 7.3 65 96-165 324-388 (402)
54 PLN02511 hydrolase 92.0 0.26 5.6E-06 48.4 5.3 69 95-167 296-370 (388)
55 PLN02442 S-formylglutathione h 92.0 0.78 1.7E-05 42.9 8.3 60 96-165 216-276 (283)
56 PF12695 Abhydrolase_5: Alpha/ 91.4 0.31 6.8E-06 39.1 4.3 44 95-141 102-145 (145)
57 PRK05077 frsA fermentation/res 91.0 0.67 1.4E-05 46.1 7.1 61 95-163 353-413 (414)
58 TIGR03100 hydr1_PEP hydrolase, 90.6 0.59 1.3E-05 43.3 5.9 64 96-160 206-273 (274)
59 COG1647 Esterase/lipase [Gener 90.3 0.38 8.3E-06 45.1 4.4 65 95-161 179-243 (243)
60 COG0596 MhpC Predicted hydrola 90.0 0.88 1.9E-05 37.5 5.9 60 96-159 220-279 (282)
61 COG0400 Predicted esterase [Ge 90.0 0.75 1.6E-05 42.1 6.0 61 96-162 145-205 (207)
62 TIGR02821 fghA_ester_D S-formy 89.8 0.72 1.6E-05 42.7 5.8 46 97-142 211-257 (275)
63 COG0412 Dienelactone hydrolase 89.8 1.8 3.9E-05 39.9 8.4 48 95-142 156-203 (236)
64 COG1073 Hydrolases of the alph 89.3 1.1 2.5E-05 39.5 6.5 64 98-163 233-298 (299)
65 PLN02980 2-oxoglutarate decarb 89.0 0.8 1.7E-05 53.3 6.6 67 95-163 1566-1640(1655)
66 PRK11071 esterase YqiA; Provis 88.2 1.3 2.7E-05 39.2 6.0 55 96-160 135-189 (190)
67 TIGR01249 pro_imino_pep_1 prol 88.0 1 2.2E-05 42.0 5.5 56 97-160 248-303 (306)
68 PRK13604 luxD acyl transferase 86.1 1.3 2.8E-05 43.0 5.2 91 96-200 201-292 (307)
69 PRK10985 putative hydrolase; P 85.8 1.5 3.3E-05 41.4 5.4 62 95-160 253-318 (324)
70 KOG2551 Phospholipase/carboxyh 83.6 3.6 7.8E-05 38.6 6.7 70 88-165 154-223 (230)
71 KOG2984 Predicted hydrolase [G 83.2 1.5 3.3E-05 41.1 4.0 63 95-162 214-276 (277)
72 PRK05371 x-prolyl-dipeptidyl a 83.1 5.5 0.00012 43.1 8.8 69 95-164 453-521 (767)
73 TIGR01838 PHA_synth_I poly(R)- 81.4 2 4.4E-05 44.6 4.6 50 96-149 414-463 (532)
74 PRK10115 protease 2; Provision 81.0 5.1 0.00011 42.7 7.6 58 95-154 603-664 (686)
75 KOG3043 Predicted hydrolase re 80.9 3.1 6.8E-05 39.2 5.2 47 95-141 162-209 (242)
76 PF08386 Abhydrolase_4: TAP-li 79.9 5.1 0.00011 32.2 5.6 59 98-161 35-93 (103)
77 COG0429 Predicted hydrolase of 78.6 5.5 0.00012 39.4 6.3 75 83-161 257-339 (345)
78 PF08840 BAAT_C: BAAT / Acyl-C 76.3 4.1 9E-05 36.7 4.5 46 96-141 114-162 (213)
79 COG3243 PhaC Poly(3-hydroxyalk 74.2 3.5 7.6E-05 42.0 3.8 51 95-149 328-378 (445)
80 COG0657 Aes Esterase/lipase [L 73.8 5.7 0.00012 37.1 4.9 42 98-141 246-287 (312)
81 KOG4391 Predicted alpha/beta h 73.7 7.8 0.00017 36.8 5.7 67 95-165 219-285 (300)
82 KOG2100 Dipeptidyl aminopeptid 73.6 13 0.00029 40.2 8.2 70 96-165 680-750 (755)
83 PRK07868 acyl-CoA synthetase; 70.8 12 0.00026 41.4 7.2 63 95-161 295-360 (994)
84 KOG1455 Lysophospholipase [Lip 69.3 6.8 0.00015 38.3 4.4 64 95-160 244-310 (313)
85 PF06821 Ser_hydrolase: Serine 68.9 6 0.00013 34.8 3.7 54 98-159 115-169 (171)
86 TIGR01839 PHA_synth_II poly(R) 67.4 11 0.00024 39.6 5.8 51 95-149 439-489 (560)
87 PF05705 DUF829: Eukaryotic pr 65.4 1.8 3.9E-05 39.1 -0.4 157 99-269 67-240 (240)
88 KOG4178 Soluble epoxide hydrol 62.6 39 0.00085 33.3 8.2 61 96-162 257-320 (322)
89 KOG1552 Predicted alpha/beta h 62.1 11 0.00024 36.0 4.2 63 95-162 190-252 (258)
90 TIGR01849 PHB_depoly_PhaZ poly 57.5 23 0.0005 35.8 5.8 66 96-161 336-405 (406)
91 COG3545 Predicted esterase of 57.1 22 0.00047 32.4 5.0 55 96-159 116-176 (181)
92 KOG1838 Alpha/beta hydrolase [ 56.7 24 0.00052 35.8 5.8 81 84-167 306-393 (409)
93 KOG1515 Arylacetamide deacetyl 55.9 33 0.00071 33.8 6.5 48 99-148 270-317 (336)
94 KOG2112 Lysophospholipase [Lip 54.2 19 0.0004 33.4 4.2 60 97-161 144-203 (206)
95 KOG2382 Predicted alpha/beta h 52.8 26 0.00056 34.4 5.1 64 94-162 250-313 (315)
96 PF11144 DUF2920: Protein of u 51.1 26 0.00056 35.5 5.0 38 98-135 294-331 (403)
97 PF05728 UPF0227: Uncharacteri 45.2 41 0.00089 30.1 4.9 54 96-159 133-186 (187)
98 PF09752 DUF2048: Uncharacteri 45.0 25 0.00054 35.0 3.7 58 98-160 290-347 (348)
99 COG2021 MET2 Homoserine acetyl 43.7 63 0.0014 32.5 6.3 61 96-161 305-367 (368)
100 COG3040 Blc Bacterial lipocali 41.7 45 0.00097 30.1 4.5 39 98-137 132-170 (174)
101 PF09497 Med12: Transcription 39.8 9.7 0.00021 28.9 0.0 20 248-267 36-55 (64)
102 PF05448 AXE1: Acetyl xylan es 39.3 52 0.0011 31.9 5.0 68 86-161 251-319 (320)
103 KOG2624 Triglyceride lipase-ch 38.1 78 0.0017 32.0 6.1 52 95-147 330-381 (403)
104 PF08538 DUF1749: Protein of u 37.7 18 0.00038 35.3 1.4 31 96-126 231-262 (303)
105 PF14417 MEDS: MEDS: MEthanoge 36.6 36 0.00077 30.1 3.1 68 124-200 6-74 (191)
106 PF03959 FSH1: Serine hydrolas 33.2 55 0.0012 29.2 3.8 42 93-137 157-198 (212)
107 PF14412 AHH: A nuclease famil 30.7 97 0.0021 24.7 4.5 78 106-196 17-104 (109)
108 PF06342 DUF1057: Alpha/beta h 30.6 93 0.002 30.4 5.0 30 96-125 211-240 (297)
109 KOG0622 Ornithine decarboxylas 28.3 1.1E+02 0.0025 31.3 5.4 43 112-158 191-233 (448)
110 PF08357 SEFIR: SEFIR domain; 27.8 63 0.0014 26.9 3.1 52 99-154 2-54 (150)
111 TIGR01840 esterase_phb esteras 27.7 60 0.0013 28.5 3.1 30 97-126 167-197 (212)
112 PF05321 HHA: Haemolysin expre 27.6 16 0.00034 27.4 -0.6 8 257-265 47-54 (57)
113 KOG4667 Predicted esterase [Li 27.1 70 0.0015 30.5 3.4 56 94-155 196-251 (269)
114 KOG4409 Predicted hydrolase/ac 26.9 1.3E+02 0.0029 30.2 5.5 62 96-161 302-363 (365)
115 PF06500 DUF1100: Alpha/beta h 26.7 33 0.00071 34.9 1.3 109 96-217 188-301 (411)
116 PRK10391 oriC-binding nucleoid 25.4 19 0.00041 28.0 -0.5 15 252-266 51-66 (71)
117 PRK10477 outer membrane lipopr 25.3 97 0.0021 27.1 3.9 38 97-135 134-171 (177)
118 PRK10945 gene expression modul 24.1 18 0.00039 28.2 -0.8 10 256-266 58-67 (72)
119 COG1654 BirA Biotin operon rep 23.0 98 0.0021 24.3 3.1 22 113-134 33-54 (79)
120 PF11339 DUF3141: Protein of u 22.6 1.1E+02 0.0023 32.5 4.1 50 95-144 295-351 (581)
121 COG2945 Predicted hydrolase of 21.9 1.7E+02 0.0038 27.2 4.9 60 94-160 146-205 (210)
122 PF15585 Imm46: Immunity prote 21.5 2.4E+02 0.0051 24.4 5.3 65 101-165 11-80 (129)
123 PF01676 Metalloenzyme: Metall 21.3 1.1E+02 0.0023 28.4 3.5 44 116-160 129-172 (252)
124 PF01488 Shikimate_DH: Shikima 21.2 32 0.0007 28.6 0.1 12 256-267 104-115 (135)
125 PF08212 Lipocalin_2: Lipocali 20.9 95 0.0021 26.0 2.9 36 99-135 105-140 (143)
126 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.7 2.9E+02 0.0064 25.9 6.4 43 113-160 117-160 (275)
127 TIGR01391 dnaG DNA primase, ca 20.7 4.3E+02 0.0093 26.5 7.9 65 98-170 300-369 (415)
128 COG4757 Predicted alpha/beta h 20.6 2E+02 0.0043 27.8 5.1 64 96-161 215-279 (281)
129 KOG2203 GTP-binding protein [G 20.3 50 0.0011 35.3 1.2 84 112-197 437-529 (772)
130 PF04504 DUF573: Protein of un 20.1 1.1E+02 0.0025 24.6 3.0 57 104-195 7-63 (98)
131 COG3208 GrsT Predicted thioest 20.1 1.6E+02 0.0034 28.1 4.4 62 94-160 173-234 (244)
No 1
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=99.95 E-value=3.1e-28 Score=220.03 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=92.9
Q ss_pred CcccchhhhcCceEEEEeCCCCCCcchhhhc-cccccccccccchh----HHHHHHHH-HHHhhhccccccccc---hhh
Q 022097 13 NVDESRLIRSCVAGQIYDSSPVDFTSDFCAR-FGLHPTIQKIPGLS----KLVSWVAK-GVTSGLDGLCLTRFE---PQR 83 (302)
Q Consensus 13 ~~~~yq~v~~rI~G~IfDS~Pgd~t~~~g~~-~~l~p~i~~~~~~~----~l~~wla~-~i~s~l~~l~l~~f~---~~r 83 (302)
+.++++.+.++|+|+|||||||.++....++ ++. .++... .....+.. .+.......+..... ...
T Consensus 91 ~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (240)
T PF05705_consen 91 SRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSA-----ALPKSSPRWFVPLWPLLQFLLRLSIISYFIFGYPDVQEYY 165 (240)
T ss_pred hcccccccccccceeEEeCCCCccccccHHHHHHH-----HcCccchhhHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3445788899999999999999765421111 111 011110 00000000 000000011111111 111
Q ss_pred HHHHHHhhcCCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHH
Q 022097 84 AEYWRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 159 (302)
Q Consensus 84 ~~~~~~L~~~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl 159 (302)
..+++.+ ...+..+|+|||||++|++|+|++||+|++++|++|++|+.++|++|+||+|+|+||++||++|.+||
T Consensus 166 ~~~~~~~-~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 166 RRALNDF-ANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred HHHHhhh-hcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 2333333 23456789999999999999999999999999999999999999999999999999999999999998
No 2
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=5.4e-26 Score=219.55 Aligned_cols=126 Identities=32% Similarity=0.444 Sum_probs=119.3
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhccc
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEI 176 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~~ 176 (302)
..++||+||++|.|+|+++||++++..+++|+.|+.++|++|+||+|+|.||..|++++.+|++++...+...++.++..
T Consensus 225 ~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~H~~h~r~~p~~y~~~~~~Fl~~~~~~~~~~~~~~~~~ 304 (350)
T KOG2521|consen 225 PWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSEHVAHFRSFPKTYLKKCSEFLRSVISSYNLKNRILGIR 304 (350)
T ss_pred cccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCccceeeeccCcHHHHHHHHHHHHhcccccCCccCcccee
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998888766666
Q ss_pred cCCCCccchhhhhhhhhhhhhccccccccccccCCCCcccccCcccc
Q 022097 177 SGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEPSDHFFLPSSTEL 223 (302)
Q Consensus 177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 223 (302)
..-+ .+|++++++|+|.++|.|.|+++||.|..+.|||++|+|.+|
T Consensus 305 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~~ 350 (350)
T KOG2521|consen 305 ADSA-GDDPLTEKICSLFQVTLNLNRSSRRSPLVLDDHLEVPSSIPY 350 (350)
T ss_pred ecCC-CCchHHHHHHHHHHHHhccchhhhcccccccceeeccccCCC
Confidence 6544 999999999999999999999999999999999999999886
No 3
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.53 E-value=0.00025 Score=62.42 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHh
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
..+|.|++++++|++||.+..+++++.+++.|.+++...|++..|.--...+..++...+.+|+++.+.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~ 211 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLK 211 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcC
Confidence 567999999999999999999999999999999999999999999555566677888889999998754
No 4
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=97.01 E-value=0.0016 Score=55.51 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=50.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 159 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl 159 (302)
...+|.|+++++.|.++|.+..+...+... +++.+.++++.|..++ .+|+++.+.|.+|+
T Consensus 186 ~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 186 NISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIFAKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred cCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHhhC
Confidence 466899999999999999887766554332 5788899999999988 58999999999884
No 5
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=96.64 E-value=0.0046 Score=52.68 Aligned_cols=61 Identities=23% Similarity=0.432 Sum_probs=50.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+++++.|.++|.+.++++.+... ..+.+.++++.|..++ .+|+++.+.+.+|++
T Consensus 191 ~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 191 AIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIPCV-EQPEAFNAALRDFLR 251 (251)
T ss_pred hcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcccc-cChHHHHHHHHHHhC
Confidence 356799999999999999988777655542 3577889999999987 679999999999873
No 6
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.56 E-value=0.0057 Score=52.86 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=50.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+++++.|.++|++..+++.+... +++.+.+++..|.-++ .+|+++.+.|.+|++
T Consensus 196 ~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 196 RIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPYGGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred ccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECCCCCCccc-cCHHHHHHHHHHHhc
Confidence 356799999999999999998877665432 4577788999999654 799999999999986
No 7
>PRK11460 putative hydrolase; Provisional
Probab=96.53 E-value=0.02 Score=52.13 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 175 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~ 175 (302)
..+|.|.+++++|++||++..++..+.+++.|.+|+.+.+++..|.= ..+....+.+|+++.+..-.-...|-|.
T Consensus 147 ~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 221 (232)
T PRK11460 147 TATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAI-----DPRLMQFALDRLRYTVPKRYWDEALSGG 221 (232)
T ss_pred CCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-----CHHHHHHHHHHHHHHcchhhHHHHhccC
Confidence 45799999999999999999999999999999999999998888864 3456677888888877554444567665
Q ss_pred cc
Q 022097 176 IS 177 (302)
Q Consensus 176 ~~ 177 (302)
+-
T Consensus 222 ~~ 223 (232)
T PRK11460 222 KP 223 (232)
T ss_pred cC
Confidence 55
No 8
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=96.42 E-value=0.0081 Score=59.41 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=57.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHh
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
...+|.|+++|++|.++|.+..++.++.+.. .+++.+.|+++.|.-++-.+|+++++.+.+|++..+.
T Consensus 322 ~I~vPvLIi~G~~D~vvp~~~a~~l~~~~~~--~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 322 SVTVPFMVLHGTADRVTDPLASQDLYNEAAS--RHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhcCC--CCceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 4568999999999999999888888776533 3577888999999998888999999999999997553
No 9
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=96.41 E-value=0.012 Score=57.12 Aligned_cols=68 Identities=25% Similarity=0.340 Sum_probs=59.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc-CCCCCccccccChHhHHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL-NGSPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F-e~SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
...+|.|++.++.|.++|.+..++.++.....|-.++.+.+ ++..|..++ .+|+++.++|.+||+++.
T Consensus 307 ~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~~~l~~i~~~~GH~~~l-e~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 307 RIKARFLVVSFTSDWLFPPARSREIVDALLAAGADVSYAEIDSPYGHDAFL-LDDPRYGRLVRAFLERAA 375 (379)
T ss_pred cCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCCeEEEEeCCCCCchhHh-cCHHHHHHHHHHHHHhhh
Confidence 45689999999999999999999998888877777887766 589999776 889999999999999754
No 10
>PHA02857 monoglyceride lipase; Provisional
Probab=96.39 E-value=0.01 Score=53.72 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=54.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC--hHhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~fl~k~ 162 (302)
...+|.|++.+++|.++|.+..+++++.... +++.+.+++..|.-|.-.. .++.++.+.+|+++.
T Consensus 207 ~i~~Pvliv~G~~D~i~~~~~~~~l~~~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 207 KIKTPILILQGTNNEISDVSGAYYFMQHANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred cCCCCEEEEecCCCCcCChHHHHHHHHHccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 4668999999999999999988888776533 6889999999999998744 678888899999875
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=96.30 E-value=0.013 Score=55.44 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=56.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCC---ceEEEEcCCCCCccccccC--hHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGG---DVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~---~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~fl~k 161 (302)
....|.|+|+++.|.+++.+..+.+++..++.|. +++.+.|+++.|.-++-.+ .++.++.+.+|+++
T Consensus 257 ~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~ 328 (330)
T PRK10749 257 DITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNR 328 (330)
T ss_pred CCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999999888877663 4678999999999987655 67788888888865
No 12
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=96.27 E-value=0.0081 Score=61.26 Aligned_cols=63 Identities=14% Similarity=0.245 Sum_probs=54.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
..+|.|+|+++.|.++|.+..+.+++... +++.+.+++..|+.++..+|++|.+.+.+||+..
T Consensus 417 I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~~ 479 (481)
T PLN03087 417 LKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEEIWRRS 479 (481)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhcc
Confidence 56899999999999999998877755542 4788899999999999999999999999999753
No 13
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=96.24 E-value=0.019 Score=51.13 Aligned_cols=61 Identities=30% Similarity=0.349 Sum_probs=49.1
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
.+|.+++++++|+++|.+..++..+.+++.|.+|+.+.|++..|-- +.+....+.+|+++.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~~ 215 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEI-----SPEELRDLREFLEKH 215 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhhh
Confidence 5699999999999999999999999999999999999999887743 355567899999875
No 14
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=96.15 E-value=0.014 Score=53.05 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=49.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
...+|.|+|+++.|+++|.+..+++.+... + .+.+.+++ .|..|. .+|+++.++|.+|+++.
T Consensus 205 ~i~~P~lii~G~~D~~v~~~~~~~l~~~~~--~--~~~~~i~~-gH~~~~-e~p~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 205 KIQQPTLVLAGDDDPIIPLINMRLLAWRIP--N--AELHIIDD-GHLFLI-TRAEAVAPIIMKFLAEE 266 (276)
T ss_pred cCCCCEEEEEeCCCCcCCHHHHHHHHHhCC--C--CEEEEEcC-CCchhh-ccHHHHHHHHHHHHHHh
Confidence 456799999999999999998888776553 2 34455665 898876 69999999999999864
No 15
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=96.14 E-value=0.023 Score=59.27 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=60.8
Q ss_pred hcCCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHh
Q 022097 91 YNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 91 ~~~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
+......+|.|+|.|++|.-||.+.-+.+++.++.+|.+|+.+.|++..|.=-...|-.+..+.+.+|+++.+.
T Consensus 545 ~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~~~~ 618 (620)
T COG1506 545 FYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKRHLK 618 (620)
T ss_pred hhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHHhc
Confidence 34456789999999999999999999999999999999999999999999655545555556666677766543
No 16
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=96.13 E-value=0.019 Score=56.81 Aligned_cols=66 Identities=17% Similarity=0.299 Sum_probs=58.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|++.++.|.++|.+..++.++.....|-+++.+.+++ ..|..|+ .+|+++.++|.+|+++
T Consensus 321 ~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~l-e~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 321 NIEANVLMIPCKQDLLQPPRYNYKMVDILQKQGKYAEVYEIESINGHMAGV-FDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhh-cCHHHHHHHHHHHHcc
Confidence 3568999999999999999999998888877677788888885 8999988 6999999999999975
No 17
>PLN02965 Probable pheophorbidase
Probab=96.12 E-value=0.015 Score=52.40 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=51.1
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...|.|+|+++.|.++|.+..+.+++... ..+.+.++++.|.-|+ .+|++..++|.+|+++
T Consensus 192 i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~~GH~~~~-e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 192 EKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLEDSDHSAFF-SVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecCCCCchhh-cCHHHHHHHHHHHHHH
Confidence 56899999999999999976666654443 2467889999999998 8999999999999875
No 18
>PRK10566 esterase; Provisional
Probab=96.11 E-value=0.027 Score=50.17 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=51.4
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCc--eEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGD--VKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~--V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
.+|.|++++++|+++|++..+++.+..++.|.. ++.+.++++.|.- .|+ ....+.+|+++.
T Consensus 186 ~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~----~~~-~~~~~~~fl~~~ 248 (249)
T PRK10566 186 DRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRI----TPE-ALDAGVAFFRQH 248 (249)
T ss_pred CCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCcc----CHH-HHHHHHHHHHhh
Confidence 479999999999999999999999999999874 7888899998862 344 467888888864
No 19
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.03 E-value=0.017 Score=51.14 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=49.0
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
..+|.|+|+++.|.++|.+.+++.++... +++.+.+++..|..++ .+|+++.+.|.+|++
T Consensus 219 i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 219 ITIPLHLIAGEEDKAVPPDESKRAATRVP----TATLHVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred CCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeEEEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 46799999999999999988877765543 3567788888887765 479999999999974
No 20
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=95.94 E-value=0.023 Score=54.17 Aligned_cols=65 Identities=26% Similarity=0.270 Sum_probs=53.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEE-EcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLV-KLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~-~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+|.++.|.++|.+.++++++...+....|+.+ .++++.|..|+ .+|+++.++|.+|++
T Consensus 286 ~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~~i~~~~GH~~~l-e~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 286 RIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYVEIESPYGHDAFL-VETDQVEELIRGFLR 351 (351)
T ss_pred hCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEEEeCCCCCcchhh-cCHHHHHHHHHHHhC
Confidence 346899999999999999999999988887654444333 46789999998 689999999999974
No 21
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=95.83 E-value=0.033 Score=53.63 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=52.3
Q ss_pred CCCCEEEEecCCCCccChHH-HHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQV-IYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kd-VE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
..+|.|+|+++.|.++|.+. +.+++++..+.=-+++.+.++++.|.-|+ .+|++..+.|.+|+++.
T Consensus 291 i~~PtLii~G~~D~~~p~~~~~~~~~~~l~~~ip~~~l~~i~~aGH~~~~-E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 291 ISLPILVLWGDQDPFTPLDGPVGKYFSSLPSQLPNVTLYVLEGVGHCPHD-DRPDLVHEKLLPWLAQL 357 (360)
T ss_pred cCCCEEEEEeCCCCCcCchhhHHHHHHhhhccCCceEEEEcCCCCCCccc-cCHHHHHHHHHHHHHhc
Confidence 56899999999999999763 33455555443335788899999999887 56999999999999863
No 22
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=95.78 E-value=0.026 Score=51.76 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=49.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|+|+++.|.++|.+..+.. ++.--..+.+.+++..|.-|+ .+|++..+.|.+|+++
T Consensus 232 ~i~~P~lvi~G~~D~~~~~~~~~~~----~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 232 AVKCPVLIAWGEKDPWEPVELGRAY----ANFDAVEDFIVLPGVGHCPQD-EAPELVNPLIESFVAR 293 (294)
T ss_pred hcCCCeEEEEecCCCCCChHHHHHH----HhcCCccceEEeCCCCCChhh-hCHHHHHHHHHHHHhc
Confidence 3568999999999999998766552 222223577889999999997 8899999999999975
No 23
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=95.66 E-value=0.052 Score=48.00 Aligned_cols=69 Identities=23% Similarity=0.265 Sum_probs=48.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
...+|.|++++++|++++.+.++++.+.+++.|.+++.+.|++..|-=-.+..+..-..+-.+-|++.+
T Consensus 143 ~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~~a~~~~~ 211 (218)
T PF01738_consen 143 KIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAEDAWQRTL 211 (218)
T ss_dssp G--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHHHHHHHHH
T ss_pred ccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999976666666222333444444433
No 24
>PRK03592 haloalkane dehalogenase; Provisional
Probab=95.63 E-value=0.033 Score=51.08 Aligned_cols=66 Identities=17% Similarity=0.251 Sum_probs=52.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHh
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
...+|.|+|+++.|.+++....++.+.+.-. ..+.+.++++.|.-|+ .+|++..+++.+|+++...
T Consensus 226 ~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~~-e~p~~v~~~i~~fl~~~~~ 291 (295)
T PRK03592 226 TSDVPKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQE-DSPEEIGAAIAAWLRRLRL 291 (295)
T ss_pred cCCCCeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhhh-cCHHHHHHHHHHHHHHhcc
Confidence 3578999999999999966656655544332 4677788999999996 6799999999999987543
No 25
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=95.61 E-value=0.036 Score=48.44 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=47.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+++++.|.+ +.+..+..++... .++.+.+++..|..++. +|+++.+.|.+|++
T Consensus 229 ~i~~P~lii~G~~D~~-~~~~~~~~~~~~~----~~~~~~~~~~gH~~~~e-~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 229 EIKVPTLLTVGEFDTM-TPEAAREMQELIA----GSRLVVFPDGSHMTMIE-DPEVYFKLLSDFIR 288 (288)
T ss_pred ccCCCEEEEecCCCcc-CHHHHHHHHHhcc----CCeEEEeCCCCCCcccC-CHHHHHHHHHHHhC
Confidence 3568999999999985 5566665554332 45678899999998885 89999999999974
No 26
>PRK07581 hypothetical protein; Validated
Probab=95.52 E-value=0.041 Score=51.86 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCccccccChHhHHHHHHHHHHHHHh
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
..+|.|+|+++.|.++|.+..+..++... +.+.+.+++ +.|..++ ..|+++.+.|.+|+++..+
T Consensus 274 I~~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~~~-~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 274 ITAKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLAGF-GQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccccc-cCcHHHHHHHHHHHHHHHh
Confidence 56899999999999999987776654432 357788898 8999977 7788899999999998654
No 27
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=95.37 E-value=0.04 Score=51.69 Aligned_cols=65 Identities=18% Similarity=0.255 Sum_probs=48.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccCh----HhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYP----IQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hP----eeY~~aV~~fl~k~ 162 (302)
...+|.|+++++.|.++|.+..+++++..... +.+.+.|+++.|.-++- +| +++++.+.+|+.+.
T Consensus 249 ~i~~PvLii~G~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e-~pd~~~~~~~~~i~~fl~~~ 317 (330)
T PLN02298 249 DVSIPFIVLHGSADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFG-EPDENIEIVRRDILSWLNER 317 (330)
T ss_pred hcCCCEEEEecCCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecC-CCHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999998887766433 46788898877765542 34 45666777777654
No 28
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=95.35 E-value=0.024 Score=53.90 Aligned_cols=65 Identities=18% Similarity=0.189 Sum_probs=53.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC-CCCccccccChHhHHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG-SPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~-SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
...+|.|+++++.|.++|.+.++++++... -+.+.+.+++ +.|..++ .+|++..++|.+|++++-
T Consensus 275 ~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~---p~a~l~~i~~~aGH~~~l-E~Pe~~~~~l~~FL~~~~ 340 (343)
T PRK08775 275 AIRVPTVVVAVEGDRLVPLADLVELAEGLG---PRGSLRVLRSPYGHDAFL-KETDRIDAILTTALRSTG 340 (343)
T ss_pred cCCCCeEEEEeCCCEeeCHHHHHHHHHHcC---CCCeEEEEeCCccHHHHh-cCHHHHHHHHHHHHHhcc
Confidence 456899999999999999887777665553 2467888984 8998888 589999999999998654
No 29
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=95.30 E-value=0.049 Score=48.94 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+++++.|++++.+..++.++.+. +++.+.++++.|.- +..+|++..++|.+|++
T Consensus 221 ~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 221 EIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVFSRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred hCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEeCCCCcCC-cccCHHHHHHHHHHHhh
Confidence 356799999999999999887777666543 47778899999996 55889999999999985
No 30
>PRK06489 hypothetical protein; Provisional
Probab=94.95 E-value=0.06 Score=51.63 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=48.9
Q ss_pred CCCCCEEEEecCCCCccChHHH--HHHHHHHHHCCCceEEEEcCCC----CCccccccChHhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVI--YNFARHLLALGGDVKLVKLNGS----PHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdV--E~ha~ear~~G~~V~~~~Fe~S----pHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
...+|.|++.++.|.++|.+.. +.+++... +.+.+.++++ .|+.| .+|++|.++|.+|+++.
T Consensus 290 ~I~~PvLvI~G~~D~~~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 290 KIKAPVLAINSADDERNPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred hCCCCEEEEecCCCcccChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhc
Confidence 3568999999999999998754 44433332 3577888986 99885 59999999999999864
No 31
>PRK03204 haloalkane dehalogenase; Provisional
Probab=94.95 E-value=0.06 Score=49.92 Aligned_cols=58 Identities=22% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCEEEEecCCCCccChHHH-HHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVI-YNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 159 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdV-E~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl 159 (302)
.+|.|+|+++.|.+++...+ +.+.+... +.+.+.++++.|.-|+ .+|++..+.+.+|+
T Consensus 227 ~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~~~~i~~aGH~~~~-e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKDVAFRPKTILPRLRATFP----DHVLVELPNAKHFIQE-DAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCCcccCcHHHHHHHHHhcC----CCeEEEcCCCcccccc-cCHHHHHHHHHHhc
Confidence 68999999999999876543 33333222 4677889999999888 78999999999986
No 32
>PRK10349 carboxylesterase BioH; Provisional
Probab=94.75 E-value=0.068 Score=47.74 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=48.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+|.++.|.++|.+..+.+.+... +.+.+.++++.|..++ .+|++..++|.+|-+
T Consensus 194 ~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~i~~~gH~~~~-e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 194 NVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYIFAKAAHAPFI-SHPAEFCHLLVALKQ 254 (256)
T ss_pred hcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEEeCCCCCCccc-cCHHHHHHHHHHHhc
Confidence 456899999999999999776554444332 4577889999999988 799999999998865
No 33
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=94.73 E-value=0.083 Score=46.34 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=45.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|+++++.|.++. ..++ . ...+.+.+++..|.-|+ .+|+++.+.|.+|+++
T Consensus 186 ~i~~P~lii~G~~D~~~~-----~~~~---~--~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 186 ALTFPFYYLCGERDSKFQ-----ALAQ---Q--LALPLHVIPNAGHNAHR-ENPAAFAASLAQILRL 241 (242)
T ss_pred ccCCCeEEEEeCCcchHH-----HHHH---H--hcCeEEEeCCCCCchhh-hChHHHHHHHHHHHhh
Confidence 356799999999998652 2222 1 26788899999999987 8899999999999975
No 34
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=94.72 E-value=0.048 Score=51.26 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=48.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|+++++.|.++|++..+.. .-.++.+.+++..|..++ .+|++..+.|.+|+++
T Consensus 312 ~i~~Pvlii~g~~D~~vp~~~~~~l-------~~~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 312 SLAIPVLVIWGEQDRIIPAAHAQGL-------PDGVAVHVLPGAGHMPQM-EAAADVNRLLAEFLGK 370 (371)
T ss_pred cCCCCEEEEEECCCCccCHHHHhhc-------cCCCeEEEeCCCCCChhh-hCHHHHHHHHHHHhcc
Confidence 3568999999999999998765432 235778899999998765 5899999999999875
No 35
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=94.66 E-value=0.093 Score=44.31 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=46.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|++.++.|.+++ +..+.+.+..-.++.+.++++.|..++ .+|++..+.+.+|++
T Consensus 192 ~~~~P~l~i~g~~D~~~~-----~~~~~~~~~~~~~~~~~~~~~gH~~~~-e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 192 ALTIPVLYLCGEKDEKFV-----QIAKEMQKLLPNLTLVIIANAGHNIHL-ENPEAFAKILLAFLE 251 (251)
T ss_pred CCCCceEEEeeCcchHHH-----HHHHHHHhcCCCCcEEEEcCCCCCcCc-cChHHHHHHHHHHhC
Confidence 356899999999998753 234455555556788889999999888 569999999999873
No 36
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=94.55 E-value=0.12 Score=49.48 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=53.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...|.|+|.++.|.+++.+..+++++.+.. -+++.+.|+++.|.-+.-.++++..+.+.+|++
T Consensus 269 ~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 269 KDIPILFIHSKGDCVCSYEGTVSFYNKLSI--SNKELHTLEDMDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCEEEEEeCCCCccCHHHHHHHHHhccC--CCcEEEEECCCCCCCccCCCHHHHHHHHHHHhh
Confidence 357999999999999999888877665543 257788899999999998888999999999875
No 37
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=94.48 E-value=0.099 Score=49.76 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=49.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHh----HHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQ----YRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPee----Y~~aV~~fl~k~ 162 (302)
...+|.|+|++++|.++|.+..+++.+.+.. -+++.+.++++.|.-+. .+|++ ..+.+.+|+++.
T Consensus 277 ~i~~P~Lii~G~~D~vv~~~~~~~l~~~~~~--~~~~l~~i~~~gH~l~~-e~p~~~~~~v~~~i~~wL~~~ 345 (349)
T PLN02385 277 EVSLPLLILHGEADKVTDPSVSKFLYEKASS--SDKKLKLYEDAYHSILE-GEPDEMIFQVLDDIISWLDSH 345 (349)
T ss_pred cCCCCEEEEEeCCCCccChHHHHHHHHHcCC--CCceEEEeCCCeeeccc-CCChhhHHHHHHHHHHHHHHh
Confidence 4578999999999999999888887766543 25678889999997544 56776 455567777654
No 38
>PRK00870 haloalkane dehalogenase; Provisional
Probab=94.40 E-value=0.079 Score=48.92 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=49.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|+|+++.|.++|... +++.+.... .-.+..+.++++.|.-|+ .+|++..+.+.+|+++
T Consensus 237 ~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~-~~~~~~~~i~~~gH~~~~-e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 237 RWDKPFLTAFSDSDPITGGGD-AILQKRIPG-AAGQPHPTIKGAGHFLQE-DSGEELAEAVLEFIRA 300 (302)
T ss_pred cCCCceEEEecCCCCcccCch-HHHHhhccc-ccccceeeecCCCccchh-hChHHHHHHHHHHHhc
Confidence 467899999999999999865 555544432 112445678999999764 8899999999999975
No 39
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=94.32 E-value=0.14 Score=50.60 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+++++.|.+++.+..+++++.. +.+.+..+++.|.-|+ .+|++..++|.+|+.
T Consensus 323 ~i~vPvLiI~G~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 323 NWKTPITVCWGLRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred cCCCCEEEEeeCCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 35789999999999999998877766642 4577889999999998 799999999999986
No 40
>PRK10673 acyl-CoA esterase; Provisional
Probab=94.27 E-value=0.13 Score=45.35 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=49.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
...+|.|+|+++.|++++.+..+..++.. -+++.+.+++..|.-++ .+|+++.+.|.+|+++
T Consensus 193 ~~~~P~l~i~G~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~-~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 193 AWPHPALFIRGGNSPYVTEAYRDDLLAQF----PQARAHVIAGAGHWVHA-EKPDAVLRAIRRYLND 254 (255)
T ss_pred CCCCCeEEEECCCCCCCCHHHHHHHHHhC----CCcEEEEeCCCCCeeec-cCHHHHHHHHHHHHhc
Confidence 34689999999999999976655554433 35677889999997654 6799999999999975
No 41
>PLN02578 hydrolase
Probab=94.25 E-value=0.13 Score=49.33 Aligned_cols=60 Identities=23% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
...+|.|+|+++.|.++|.+..++..+... +. +.+.. ++.|+.|. .+|+++.++|.+|++
T Consensus 294 ~i~~PvLiI~G~~D~~v~~~~~~~l~~~~p--~a--~l~~i-~~GH~~~~-e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 294 KLSCPLLLLWGDLDPWVGPAKAEKIKAFYP--DT--TLVNL-QAGHCPHD-EVPEQVNKALLEWLS 353 (354)
T ss_pred cCCCCEEEEEeCCCCCCCHHHHHHHHHhCC--CC--EEEEe-CCCCCccc-cCHHHHHHHHHHHHh
Confidence 357899999999999999988776655442 23 34445 57898875 689999999999986
No 42
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=94.19 E-value=0.073 Score=44.25 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=42.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAA 154 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~a 154 (302)
..+|.|+++++.|.+++.+.++++.+.. -+++.+.++++.|..++. +|++..++
T Consensus 175 ~~~pvl~i~g~~D~~~~~~~~~~~~~~~----~~~~~~~~~~~gH~~~~~-~p~~~~~a 228 (228)
T PF12697_consen 175 IKVPVLVIHGEDDPIVPPESAEELADKL----PNAELVVIPGAGHFLFLE-QPDEVAEA 228 (228)
T ss_dssp SSSEEEEEEETTSSSSHHHHHHHHHHHS----TTEEEEEETTSSSTHHHH-SHHHHHHH
T ss_pred cCCCeEEeecCCCCCCCHHHHHHHHHHC----CCCEEEEECCCCCccHHH-CHHHHhcC
Confidence 4689999999999999966665555433 368899999999998885 88876553
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=94.02 E-value=0.15 Score=48.51 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCc-eEEEEcCCCCCccccccCh--HhHHHHHHHHHHHHHh
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGD-VKLVKLNGSPHIGHYEYYP--IQYRAAITGLLEKAAS 164 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~-V~~~~Fe~SpHV~H~R~hP--eeY~~aV~~fl~k~~~ 164 (302)
....|.|.+++++|.++++ ++...+-.+..|.. ++.+.+++.-|=-|.-.+. +++++.+.+|+.+...
T Consensus 226 ~~~~PvLll~g~~D~vv~~--~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 226 AIALPVLLLQGGDDRVVDN--VEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred cccCCEEEEecCCCccccC--cHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 4567999999999999997 56666666666665 7999999999999999999 9999999999987643
No 44
>PLN02872 triacylglycerol lipase
Probab=93.98 E-value=0.15 Score=50.60 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=51.2
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCcccc--ccChHhHHHHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHY--EYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~--R~hPeeY~~aV~~fl~k~~ 163 (302)
..|.+.+||++|.+++.++++..++++.. .++.+.+++..|..++ ...|++-.+.|.+|+++..
T Consensus 325 ~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~ 390 (395)
T PLN02872 325 SLPLWMGYGGTDGLADVTDVEHTLAELPS---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLG 390 (395)
T ss_pred CccEEEEEcCCCCCCCHHHHHHHHHHCCC---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhh
Confidence 57999999999999999999888876643 3567788888887443 4668888899999998644
No 45
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=93.58 E-value=0.096 Score=45.49 Aligned_cols=44 Identities=36% Similarity=0.415 Sum_probs=38.3
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCcccc
Q 022097 99 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHY 144 (302)
Q Consensus 99 PrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~ 144 (302)
|.++++++.|.+++ +.+.+++++++.|.+|+.+.+++.+|+=+|
T Consensus 168 p~~i~~g~~D~l~~--~~~~~~~~L~~~gv~v~~~~~~g~~H~f~~ 211 (211)
T PF07859_consen 168 PTLIIHGEDDVLVD--DSLRFAEKLKKAGVDVELHVYPGMPHGFFM 211 (211)
T ss_dssp EEEEEEETTSTTHH--HHHHHHHHHHHTT-EEEEEEETTEETTGGG
T ss_pred CeeeeccccccchH--HHHHHHHHHHHCCCCEEEEEECCCeEEeeC
Confidence 88889999998874 788999999999999999999999997554
No 46
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=93.22 E-value=0.31 Score=46.26 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=49.1
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCC-CceEEEEcCCCCCccccccChHhHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALG-GDVKLVKLNGSPHIGHYEYYPIQYR 152 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G-~~V~~~~Fe~SpHV~H~R~hPeeY~ 152 (302)
..|.++.+|..|++||+...++.++++.++| .+|+.+......|++-+...-....
T Consensus 219 ~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~a~V~~~~~~~~~H~~~~~~~~~~a~ 275 (290)
T PF03583_consen 219 TVPVLIYQGTADEVVPPADTDALVAKWCAAGGADVEYVRYPGGGHLGAAFASAPDAL 275 (290)
T ss_pred CCCEEEEecCCCCCCChHHHHHHHHHHHHcCCCCEEEEecCCCChhhhhhcCcHHHH
Confidence 5799999999999999999999999999999 7999999999999887655544433
No 47
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=93.11 E-value=0.32 Score=47.07 Aligned_cols=60 Identities=25% Similarity=0.511 Sum_probs=51.7
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
+|.|++.++.|+++|.+..+++.++. -.++.+.=++..|+-|+ .-||++.+.+..||...
T Consensus 265 ~pvlii~G~~D~~~p~~~~~~~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 265 CPVLIIWGDKDQIVPLELAEELKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARL 324 (326)
T ss_pred CceEEEEcCcCCccCHHHHHHHHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHh
Confidence 79999999999999988555544443 56788889999999999 99999999999999865
No 48
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=92.85 E-value=0.31 Score=45.19 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=46.4
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
..|.|||+++.|.++|.+..+.+++... |. +.+..+ +.|..++ .+|++-.+.|.++...
T Consensus 211 ~vP~l~I~g~~D~~ip~~~~~~m~~~~~--~~--~~~~l~-~gH~p~l-s~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 211 KVPRVYIKTLHDHVVKPEQQEAMIKRWP--PS--QVYELE-SDHSPFF-STPFLLFGLLIKAAAS 269 (273)
T ss_pred ccceEEEEeCCCCCCCHHHHHHHHHhCC--cc--EEEEEC-CCCCccc-cCHHHHHHHHHHHHHH
Confidence 4699999999999999998888776643 33 455555 7898887 8999998888877554
No 49
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=92.67 E-value=0.16 Score=43.23 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=44.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAIT 156 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~ 156 (302)
...+|.|+++++.|.++|++.++..++... ..+.+.++++.|..++ .+|++..+.|.
T Consensus 173 ~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~~~-~~~~~~~~~i~ 229 (230)
T PF00561_consen 173 NIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFAFL-EGPDEFNEIII 229 (230)
T ss_dssp TTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTHHH-HSHHHHHHHHH
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHHHh-cCHHhhhhhhc
Confidence 477899999999999999998888444333 3888999999999844 56777766654
No 50
>PRK10162 acetyl esterase; Provisional
Probab=92.51 E-value=0.49 Score=45.01 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=40.2
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccc
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH 143 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H 143 (302)
.|.++++++.|++.+ +.+.+++.+++.|.+|+.+.|++-.|.=.
T Consensus 249 Pp~~i~~g~~D~L~d--e~~~~~~~L~~aGv~v~~~~~~g~~H~f~ 292 (318)
T PRK10162 249 PPCFIAGAEFDPLLD--DSRLLYQTLAAHQQPCEFKLYPGTLHAFL 292 (318)
T ss_pred CCeEEEecCCCcCcC--hHHHHHHHHHHcCCCEEEEEECCCceehh
Confidence 389999999999986 78999999999999999999999999754
No 51
>PRK05855 short chain dehydrogenase; Validated
Probab=92.39 E-value=0.18 Score=50.17 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=48.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
..+|.|+|+++.|+++|.+..+.+.+... ..+.+.++ +.|..|+ .+|+++.++|.+|+.+..
T Consensus 232 ~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~~-e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 232 TDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLPM-SHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred ccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcchh-hChhHHHHHHHHHHHhcc
Confidence 56899999999999999887776654332 24556666 5799985 689999999999999753
No 52
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=92.30 E-value=0.32 Score=46.49 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=49.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC--hHhHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~~aV~~fl~k 161 (302)
..+|.|+++++.|.++|++.++...+.... -+++.+.++ +.|++.+-.- +++=|.++.+|+++
T Consensus 285 i~~Pvliv~G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~-~gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 285 IKMPILNIYAERDHLVPPDASKALNDLVSS--EDYTELSFP-GGHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHcCC--CCeEEEEcC-CCCEEEEECchhHhhhhHHHHHHHHh
Confidence 568999999999999999998877775532 356666676 7999988765 58888888888764
No 53
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=92.13 E-value=0.46 Score=46.85 Aligned_cols=65 Identities=12% Similarity=0.079 Sum_probs=49.5
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhh
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
..+|.|+||++.|.+++ ...++.. +..+..++.+.++++.|.-|+ .+|+++.++|.+|++..+..
T Consensus 324 I~vP~liI~G~~D~i~~-~~~~~~~---~~~~~~~~~~~i~~aGH~~~~-E~P~~f~~~l~~~~~~~~~~ 388 (402)
T PLN02894 324 WKVPTTFIYGRHDWMNY-EGAVEAR---KRMKVPCEIIRVPQGGHFVFL-DNPSGFHSAVLYACRKYLSP 388 (402)
T ss_pred CCCCEEEEEeCCCCCCc-HHHHHHH---HHcCCCCcEEEeCCCCCeeec-cCHHHHHHHHHHHHHHhccC
Confidence 46899999999998876 4444432 233446888999999997665 48999999999998865554
No 54
>PLN02511 hydrolase
Probab=92.04 E-value=0.26 Score=48.36 Aligned_cols=69 Identities=22% Similarity=0.260 Sum_probs=50.4
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHh------HHHHHHHHHHHHHhhhH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQ------YRAAITGLLEKAASVYS 167 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPee------Y~~aV~~fl~k~~~~~~ 167 (302)
...+|.|+|++++|+++|.+.+.... + +..-.++.+..+++.|++++-. |+. +.+.|.+|++.......
T Consensus 296 ~I~vPtLiI~g~dDpi~p~~~~~~~~--~-~~~p~~~l~~~~~gGH~~~~E~-p~~~~~~~w~~~~i~~Fl~~~~~~~~ 370 (388)
T PLN02511 296 HVRVPLLCIQAANDPIAPARGIPRED--I-KANPNCLLIVTPSGGHLGWVAG-PEAPFGAPWTDPVVMEFLEALEEGKS 370 (388)
T ss_pred cCCCCeEEEEcCCCCcCCcccCcHhH--H-hcCCCEEEEECCCcceeccccC-CCCCCCCccHHHHHHHHHHHHHHhcc
Confidence 46789999999999999987553211 1 2233688899999999999854 554 46788899987665543
No 55
>PLN02442 S-formylglutathione hydrolase
Probab=91.98 E-value=0.78 Score=42.93 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=50.1
Q ss_pred CCCCEEEEecCCCCccChH-HHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhh
Q 022097 96 LGTPFLIICSDNDELAPQQ-VIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~k-dVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
..+|.|+++++.|++++.. ..+.+.+.+++.|.+++.+.+++..|- |..+..|+++.+.-
T Consensus 216 ~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~~g~~~~~~~~pg~~H~----------~~~~~~~i~~~~~~ 276 (283)
T PLN02442 216 VSATILIDQGEADKFLKEQLLPENFEEACKEAGAPVTLRLQPGYDHS----------YFFIATFIDDHINH 276 (283)
T ss_pred cCCCEEEEECCCCccccccccHHHHHHHHHHcCCCeEEEEeCCCCcc----------HHHHHHHHHHHHHH
Confidence 5679999999999999974 478899999999999999999999996 44777777766543
No 56
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=91.36 E-value=0.31 Score=39.08 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=36.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCc
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHI 141 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV 141 (302)
....|.++++++.|++++.+.+++..++++ .+++...+++..|.
T Consensus 102 ~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 102 KIRIPVLFIHGENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TTTSEEEEEEETT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred ccCCcEEEEEECCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 345699999999999999998888877776 67899999999984
No 57
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=90.96 E-value=0.67 Score=46.14 Aligned_cols=61 Identities=21% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
...+|.|+++++.|+++|.++.+.+++.. -+.+.+.++++ |+-..|++....+.+|+++.+
T Consensus 353 ~i~~PvLiI~G~~D~ivP~~~a~~l~~~~----~~~~l~~i~~~----~~~e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 353 RCPTPMLSGYWKNDPFSPEEDSRLIASSS----ADGKLLEIPFK----PVYRNFDKALQEISDWLEDRL 413 (414)
T ss_pred CCCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCeEEEccCC----CccCCHHHHHHHHHHHHHHHh
Confidence 35689999999999999999988665433 24567778886 344588999999999998764
No 58
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=90.57 E-value=0.59 Score=43.26 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCCCEEEEecCCCCccChHHHHH-H-HHHHHH-CC-CceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYN-F-ARHLLA-LG-GDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~-h-a~ear~-~G-~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
..+|.|++||..|..++ +..+. | .+.+++ .+ -.|+.+.++++.|+-+....+++..+.|.+||+
T Consensus 206 ~~~P~ll~~g~~D~~~~-~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 206 FQGPVLFILSGNDLTAQ-EFADSVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred cCCcEEEEEcCcchhHH-HHHHHhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 36799999999999863 22222 1 144444 34 579999999999999999999999999999986
No 59
>COG1647 Esterase/lipase [General function prediction only]
Probab=90.33 E-value=0.38 Score=45.13 Aligned_cols=65 Identities=25% Similarity=0.299 Sum_probs=57.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
....|.+.+-++.|++||.+..+-...+..+- +.+...|++|.||=-.-...|.-.++|..||++
T Consensus 179 ~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 179 KIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred hcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 35679999999999999999999888887653 778899999999998888899999999999873
No 60
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=90.01 E-value=0.88 Score=37.54 Aligned_cols=60 Identities=32% Similarity=0.546 Sum_probs=43.0
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 159 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl 159 (302)
...|.|++++..|.+.|....+...+.... ..+.+.++++.|..|+.. |+.+++.+.+++
T Consensus 220 ~~~P~l~i~g~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~gH~~~~~~-p~~~~~~i~~~~ 279 (282)
T COG0596 220 ITVPTLIIHGEDDPVVPAELARRLAAALPN---DARLVVIPGAGHFPHLEA-PEAFAAALLAFL 279 (282)
T ss_pred CCCCeEEEecCCCCcCCHHHHHHHHhhCCC---CceEEEeCCCCCcchhhc-HHHHHHHHHHHH
Confidence 447999999999988776653333222222 678888999999998754 558888877744
No 61
>COG0400 Predicted esterase [General function prediction only]
Probab=90.00 E-value=0.75 Score=42.08 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=49.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
...|.|.++++.|++||...-++..+..++.|.+|+.+.++ ..| - ..++++ +++.+||.+.
T Consensus 145 ~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH---~-i~~e~~-~~~~~wl~~~ 205 (207)
T COG0400 145 AGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGH---E-IPPEEL-EAARSWLANT 205 (207)
T ss_pred CCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCC---c-CCHHHH-HHHHHHHHhc
Confidence 45699999999999999999999999999999999999988 444 3 234444 6667777654
No 62
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=89.83 E-value=0.72 Score=42.69 Aligned_cols=46 Identities=20% Similarity=0.157 Sum_probs=40.3
Q ss_pred CCCEEEEecCCCCccCh-HHHHHHHHHHHHCCCceEEEEcCCCCCcc
Q 022097 97 GTPFLIICSDNDELAPQ-QVIYNFARHLLALGGDVKLVKLNGSPHIG 142 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~-kdVE~ha~ear~~G~~V~~~~Fe~SpHV~ 142 (302)
..|.++.+++.|+++|. ...+.+.+.+++.|.+|+...+++..|.=
T Consensus 211 ~~plli~~G~~D~~v~~~~~~~~~~~~l~~~g~~v~~~~~~g~~H~f 257 (275)
T TIGR02821 211 HSTILIDQGTADQFLDEQLRPDAFEQACRAAGQALTLRRQAGYDHSY 257 (275)
T ss_pred CCCeeEeecCCCcccCccccHHHHHHHHHHcCCCeEEEEeCCCCccc
Confidence 44677779999999998 57888999999999999999999999973
No 63
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.82 E-value=1.8 Score=39.92 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=43.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCcc
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIG 142 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~ 142 (302)
..++|.|.+|++.|..+|.+.++.+.++.++.|.+++.+.|.+..|.=
T Consensus 156 ~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 156 KIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred cccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 467899999999999999999999999999999999999999966643
No 64
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=89.32 E-value=1.1 Score=39.49 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChH--hHHHHHHHHHHHHH
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI--QYRAAITGLLEKAA 163 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPe--eY~~aV~~fl~k~~ 163 (302)
.|-|++.+..|.+||....++....++.. ..+....++..|.-=+...+. +|+..+.+|+++.+
T Consensus 233 ~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 233 RPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred cceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999988876 667777778887766655664 89999999998754
No 65
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=89.01 E-value=0.8 Score=53.34 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=50.6
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHC-------CC-ceEEEEcCCCCCccccccChHhHHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLAL-------GG-DVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAA 163 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~-------G~-~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~ 163 (302)
...+|.|+|+++.|.+++ +..+++.+...+. +. .++.+.++++.|..|+ .+|+++.++|.+|+++..
T Consensus 1566 ~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~~~~~a~lvvI~~aGH~~~l-E~Pe~f~~~I~~FL~~~~ 1640 (1655)
T PLN02980 1566 QCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDKGKEIIEIVEIPNCGHAVHL-ENPLPVIRALRKFLTRLH 1640 (1655)
T ss_pred hCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccccccceEEEEECCCCCchHH-HCHHHHHHHHHHHHHhcc
Confidence 356899999999999886 4444444433221 11 2688999999999987 789999999999999744
No 66
>PRK11071 esterase YqiA; Provisional
Probab=88.20 E-value=1.3 Score=39.17 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=42.9
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
..+|.+.+.+++|++||++.-.+..+.+ +....+|+-| --.+.++|+..+.+|++
T Consensus 135 ~~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH---~f~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 135 SPDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNH---AFVGFERYFNQIVDFLG 189 (190)
T ss_pred ChhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCc---chhhHHHhHHHHHHHhc
Confidence 4567788999999999999988888843 2335566555 44778999999999975
No 67
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=87.99 E-value=1 Score=42.00 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=40.9
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
.+|.|++.++.|.++|.+..+++++... +.+.+.++++.|. -.+|+.. ++|.+|++
T Consensus 248 ~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~---~~~~~~~-~~i~~~~~ 303 (306)
T TIGR01249 248 NIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHS---AFDPNNL-AALVHALE 303 (306)
T ss_pred CCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCC---CCChHHH-HHHHHHHH
Confidence 4699999999999999988877776643 3566667766555 5688877 55555554
No 68
>PRK13604 luxD acyl transferase; Provisional
Probab=86.10 E-value=1.3 Score=43.03 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=64.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 175 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~ 175 (302)
...|-|+|++++|++||.+.++++.+.++. .+.+.+.++++-|.=+ .+ .-.+++|.+..... .++|+..
T Consensus 201 l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kkl~~i~Ga~H~l~--~~----~~~~~~~~~~~~~~---~~~~~~~ 269 (307)
T PRK13604 201 LDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCKLYSLIGSSHDLG--EN----LVVLRNFYQSVTKA---AIALDNG 269 (307)
T ss_pred cCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcEEEEeCCCccccC--cc----hHHHHHHHHHHHHH---HheecCC
Confidence 446999999999999999999999998754 5788999999998633 22 23456676654433 3567776
Q ss_pred ccCCCCccchhhhh-hhhhhhhhccc
Q 022097 176 ISGMEGTHDEISEL-ICDLQNVAVNS 200 (302)
Q Consensus 176 ~~~~~g~~~~~~~~-~~~~~~~~~~~ 200 (302)
..++ .++|.|| +-+|--+++|-
T Consensus 270 ~~~~---~~~~~~~~~~~~~~~~~~~ 292 (307)
T PRK13604 270 SLDL---DVDIIEPSFEDLTSATVKE 292 (307)
T ss_pred cccc---cccccCCCHHHHHHHHHHH
Confidence 6654 4666666 45565555543
No 69
>PRK10985 putative hydrolase; Provisional
Probab=85.77 E-value=1.5 Score=41.43 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=44.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC--hHhHH--HHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY--PIQYR--AAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h--PeeY~--~aV~~fl~ 160 (302)
...+|.|+|.++.|++++.+.++...+ .--+++.+.+++..|++++..- +.++| +.+.+|++
T Consensus 253 ~i~~P~lii~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~ 318 (324)
T PRK10985 253 QIRKPTLIIHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLT 318 (324)
T ss_pred CCCCCEEEEecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHH
Confidence 456799999999999999887766422 2235788899999999999752 23344 23556664
No 70
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=83.63 E-value=3.6 Score=38.58 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=54.4
Q ss_pred HHhhcCCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhh
Q 022097 88 RALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 88 ~~L~~~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
+..+...++.+|.|-+|++.|.++|....+.+++..++. .+..... ||+-=....|.+.+.+|++....-
T Consensus 154 ~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a-----~vl~Hpg---gH~VP~~~~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 154 DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA-----TVLEHPG---GHIVPNKAKYKEKIADFIQSFLQE 223 (230)
T ss_pred hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC-----eEEecCC---CccCCCchHHHHHHHHHHHHHHHh
Confidence 333444578899999999999999999999999998765 4444443 577777789999999998865543
No 71
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=83.19 E-value=1.5 Score=41.09 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
...+|.|++.++.|++|+...|. ++...++ --+.+.|....|==|+| +++++.+.|.+|+++.
T Consensus 214 ~vkcPtli~hG~kDp~~~~~hv~-fi~~~~~---~a~~~~~peGkHn~hLr-ya~eFnklv~dFl~~~ 276 (277)
T KOG2984|consen 214 QVKCPTLIMHGGKDPFCGDPHVC-FIPVLKS---LAKVEIHPEGKHNFHLR-YAKEFNKLVLDFLKST 276 (277)
T ss_pred cccCCeeEeeCCcCCCCCCCCcc-chhhhcc---cceEEEccCCCcceeee-chHHHHHHHHHHHhcc
Confidence 46789999999999999977654 4444443 24567899999999987 8999999999999863
No 72
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=83.14 E-value=5.5 Score=43.14 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=56.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHh
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAAS 164 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~ 164 (302)
...+|.|++.+..|..++.+...+..+.++++|.+++....+ ..|+.-....+.+|.+.+..|+...+.
T Consensus 453 kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~-g~H~~~~~~~~~d~~e~~~~Wfd~~Lk 521 (767)
T PRK05371 453 KIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQ-GGHVYPNNWQSIDFRDTMNAWFTHKLL 521 (767)
T ss_pred CCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeC-CCccCCCchhHHHHHHHHHHHHHhccc
Confidence 567899999999999999999999999999999988886654 467655555577888888888876554
No 73
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=81.37 E-value=2 Score=44.60 Aligned_cols=50 Identities=34% Similarity=0.392 Sum_probs=40.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 149 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPe 149 (302)
..+|.|++.++.|.++|++.++...+. .+ ..+...++++.|+.|+-.-|-
T Consensus 414 I~vPvLvV~G~~D~IvP~~sa~~l~~~---i~-~~~~~vL~~sGHi~~ienPp~ 463 (532)
T TIGR01838 414 VKVPVYIIATREDHIAPWQSAYRGAAL---LG-GPKTFVLGESGHIAGVVNPPS 463 (532)
T ss_pred CCCCEEEEeeCCCCcCCHHHHHHHHHH---CC-CCEEEEECCCCCchHhhCCCC
Confidence 568999999999999999988866543 34 456678999999999877664
No 74
>PRK10115 protease 2; Provisional
Probab=80.95 E-value=5.1 Score=42.67 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=45.5
Q ss_pred CCCCCEE-EEecCCCCccChHHHHHHHHHHHHCCCceEEEEc---CCCCCccccccChHhHHHH
Q 022097 95 DLGTPFL-IICSDNDELAPQQVIYNFARHLLALGGDVKLVKL---NGSPHIGHYEYYPIQYRAA 154 (302)
Q Consensus 95 ~~~aPrL-YLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F---e~SpHV~H~R~hPeeY~~a 154 (302)
....|.| ++.|.+|+-||+..-+++++++|++|.+++.+.| .++.|- ......++++.
T Consensus 603 ~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg--~~~~r~~~~~~ 664 (686)
T PRK10115 603 AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHG--GKSGRFKSYEG 664 (686)
T ss_pred ccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCC--CCcCHHHHHHH
Confidence 4567955 5599999999999999999999999999999999 666665 33445555444
No 75
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=80.89 E-value=3.1 Score=39.17 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCC-ceEEEEcCCCCCc
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGG-DVKLVKLNGSPHI 141 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~-~V~~~~Fe~SpHV 141 (302)
+..+|.|+|+++.|.++|.++|.+.-+..+++-. .-..+.|.+-.|-
T Consensus 162 ~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~~~~~~v~~f~g~~HG 209 (242)
T KOG3043|consen 162 NVKAPILFLFAELDEDVPPKDVKAWEEKLKENPAVGSQVKTFSGVGHG 209 (242)
T ss_pred cCCCCEEEEeecccccCCHHHHHHHHHHHhcCcccceeEEEcCCccch
Confidence 5678999999999999999999988877776522 1246678887773
No 76
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=79.89 E-value=5.1 Score=32.16 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=46.9
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
.|.|+|=++.|+++|++..++.++.... -.++.+++..|..+....+-- .++|.+||.+
T Consensus 35 ~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~~~s~C~-~~~v~~yl~~ 93 (103)
T PF08386_consen 35 PPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYAGGSPCV-DKAVDDYLLD 93 (103)
T ss_pred CCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceecCCChHH-HHHHHHHHHc
Confidence 6999999999999999988888877653 378899999999997555554 3666666653
No 77
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=78.59 E-value=5.5 Score=39.44 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=53.5
Q ss_pred hHHHHHHhhcC---CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCcccccc---ChHhHH--HH
Q 022097 83 RAEYWRALYNS---VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY---YPIQYR--AA 154 (302)
Q Consensus 83 r~~~~~~L~~~---~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~---hPeeY~--~a 154 (302)
..+||++--+- .....|.|+||+++|++++.++|.+.... +.=.|..+..+...|||-+.. +|. +| +.
T Consensus 257 a~dYYr~aSs~~~L~~Ir~PtLii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~-~W~~~r 332 (345)
T COG0429 257 AEDYYRQASSLPLLPKIRKPTLIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQ-MWLEQR 332 (345)
T ss_pred HHHHHHhccccccccccccceEEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccch-hhHHHH
Confidence 45788752111 24668999999999999999988887655 445799999999999999883 343 33 33
Q ss_pred HHHHHHH
Q 022097 155 ITGLLEK 161 (302)
Q Consensus 155 V~~fl~k 161 (302)
+-+|++.
T Consensus 333 i~~~l~~ 339 (345)
T COG0429 333 ILDWLDP 339 (345)
T ss_pred HHHHHHH
Confidence 4555543
No 78
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=76.30 E-value=4.1 Score=36.73 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHH-HHHHCCCc--eEEEEcCCCCCc
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFAR-HLLALGGD--VKLVKLNGSPHI 141 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~-ear~~G~~--V~~~~Fe~SpHV 141 (302)
..+|-|++.|++|.+.|.....+.+. ++++.|.+ ++...+++..|.
T Consensus 114 i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 114 IKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp --SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred cCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 56899999999999999888877655 45667766 788888776665
No 79
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=74.16 E-value=3.5 Score=41.97 Aligned_cols=51 Identities=31% Similarity=0.418 Sum_probs=42.3
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 149 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPe 149 (302)
...+|.+.+++++|.|+||+.|-.-+ +-.|.+|+.+.. +|.|.+-+-.||.
T Consensus 328 ~It~pvy~~a~~~DhI~P~~Sv~~g~---~l~~g~~~f~l~-~sGHIa~vVN~p~ 378 (445)
T COG3243 328 DITCPVYNLAAEEDHIAPWSSVYLGA---RLLGGEVTFVLS-RSGHIAGVVNPPG 378 (445)
T ss_pred hcccceEEEeecccccCCHHHHHHHH---HhcCCceEEEEe-cCceEEEEeCCcc
Confidence 36689999999999999999886654 445558888877 5999999999885
No 80
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=73.77 E-value=5.7 Score=37.14 Aligned_cols=42 Identities=31% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCc
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHI 141 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV 141 (302)
.|.+.+.++.|.+.+ +.+.+++.+++.|..|+...|++..|.
T Consensus 246 PP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~~~g~~H~ 287 (312)
T COG0657 246 PPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRVYPGMIHG 287 (312)
T ss_pred CCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEEeCCccee
Confidence 389999999999999 899999999999999999999999993
No 81
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=73.68 E-value=7.8 Score=36.84 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=49.8
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhh
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
..+.|.|||=+.+|+|||+.......+..-+. ..+...|.+..|-.---. +-||+++.+|+.+....
T Consensus 219 ~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~--~Krl~eFP~gtHNDT~i~--dGYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 219 QCRMPFLFISGLKDELVPPVMMRQLYELCPSR--TKRLAEFPDGTHNDTWIC--DGYFQAIEDFLAEVVKS 285 (300)
T ss_pred cccCceEEeecCccccCCcHHHHHHHHhCchh--hhhheeCCCCccCceEEe--ccHHHHHHHHHHHhccC
Confidence 35679999999999999998777766654322 345567888777554443 57999999999976653
No 82
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=73.56 E-value=13 Score=40.19 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=54.7
Q ss_pred CCCCE-EEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhh
Q 022097 96 LGTPF-LIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 96 ~~aPr-LYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
.+.|. |++.+++|+-|+.+.--.+++.++.+|++.+...|+++.|-==.+.--..+...+..|+..|...
T Consensus 680 ~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~~~~~~~~~~ 750 (755)
T KOG2100|consen 680 IKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLDRFLRDCFGS 750 (755)
T ss_pred hccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHHHHHHHHcCc
Confidence 44577 99999999999999999999999999999999999999885333332244456667777765544
No 83
>PRK07868 acyl-CoA synthetase; Validated
Probab=70.82 E-value=12 Score=41.40 Aligned_cols=63 Identities=14% Similarity=0.198 Sum_probs=49.9
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEE-EEcCCCCCcccccc--ChHhHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKL-VKLNGSPHIGHYEY--YPIQYRAAITGLLEK 161 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~-~~Fe~SpHV~H~R~--hPeeY~~aV~~fl~k 161 (302)
...+|.|+++++.|.++|.+.++...+..- ..+. +.+.+..|.+++-. -|++=|-.|.+++++
T Consensus 295 ~i~~P~L~i~G~~D~ivp~~~~~~l~~~i~----~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 295 DITCPVLAFVGEVDDIGQPASVRGIRRAAP----NAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred hCCCCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 355799999999999999999888865442 2233 56778888888765 489999999999995
No 84
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=69.33 E-value=6.8 Score=38.31 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC---hHhHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY---PIQYRAAITGLLE 160 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h---PeeY~~aV~~fl~ 160 (302)
....|-|++.+++|.+++.+..+++.+.|.++ |.+.+.++|--|.-|.-.- -+.+.+.+.+.++
T Consensus 244 ~vtvPflilHG~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~ 310 (313)
T KOG1455|consen 244 EVTVPFLILHGTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLD 310 (313)
T ss_pred cccccEEEEecCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHH
Confidence 35569999999999999999999999999886 8899999999999886333 2445555555554
No 85
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=68.93 E-value=6 Score=34.77 Aligned_cols=54 Identities=28% Similarity=0.235 Sum_probs=33.6
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC-hHhHHHHHHHHH
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY-PIQYRAAITGLL 159 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h-PeeY~~aV~~fl 159 (302)
.|.+.+.|++|+.+|++.-+++++.+.. + |...++.||+... --..|..+.+.|
T Consensus 115 ~~~~viaS~nDp~vp~~~a~~~A~~l~a-----~---~~~~~~~GHf~~~~G~~~~p~~~~~l 169 (171)
T PF06821_consen 115 FPSIVIASDNDPYVPFERAQRLAQRLGA-----E---LIILGGGGHFNAASGFGPWPEGLDLL 169 (171)
T ss_dssp CCEEEEEETTBSSS-HHHHHHHHHHHT------E---EEEETS-TTSSGGGTHSS-HHHHHHH
T ss_pred CCeEEEEcCCCCccCHHHHHHHHHHcCC-----C---eEECCCCCCcccccCCCchHHHHHHh
Confidence 4779999999999999988888888754 2 3344677776543 223344444433
No 86
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=67.36 E-value=11 Score=39.60 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=41.1
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPI 149 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPe 149 (302)
.+.+|.+.+.+++|.|+||+.+...++.. |-+++.+.. .|.|++-+-.-|-
T Consensus 439 ~I~~Pvl~va~~~DHIvPw~s~~~~~~l~---gs~~~fvl~-~gGHIggivnpP~ 489 (560)
T TIGR01839 439 KVKCDSFSVAGTNDHITPWDAVYRSALLL---GGKRRFVLS-NSGHIQSILNPPG 489 (560)
T ss_pred cCCCCeEEEecCcCCcCCHHHHHHHHHHc---CCCeEEEec-CCCccccccCCCC
Confidence 35689999999999999999998886644 447776666 6889998877664
No 87
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=65.39 E-value=1.8 Score=39.07 Aligned_cols=157 Identities=15% Similarity=0.077 Sum_probs=92.9
Q ss_pred CEEEEecCCC-CccChHHHHHHHHHHHHCC--Cc-eEEEEcCCCCCccccccChHhHHHHHHHHHH-------HHHhhhH
Q 022097 99 PFLIICSDND-ELAPQQVIYNFARHLLALG--GD-VKLVKLNGSPHIGHYEYYPIQYRAAITGLLE-------KAASVYS 167 (302)
Q Consensus 99 PrLYLYSkaD-~LVp~kdVE~ha~ear~~G--~~-V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~-------k~~~~~~ 167 (302)
+++++.+=.. -..-+..+.+..+...+-+ .+ +....|+.+|+..++ ...-+++.+...... .......
T Consensus 67 ~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (240)
T PF05705_consen 67 PPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTY-SSSARAFSAALPKSSPRWFVPLWPLLQFL 145 (240)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCcccc-ccHHHHHHHHcCccchhhHHHHHHHHHHH
Confidence 4667665544 3333344444333333212 23 888999999999999 666666666532221 1111111
Q ss_pred HHhhhhccccCCCCccchhhhhhhhhhhhhccccccccccccCC--CCcccccCccccc--cCCCCCcccccccCcccCC
Q 022097 168 QRIRQLGEISGMEGTHDEISELICDLQNVAVNSNQSLRRVAVEP--SDHFFLPSSTELH--SQESGSLQDERNSRSVYLP 243 (302)
Q Consensus 168 ~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (302)
... .-+..-++..++.....++.++.....| .-+.|+-|..+-- .++++...+|+|+.-..+-
T Consensus 146 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~ 212 (240)
T PF05705_consen 146 LRL-------------SIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVR 212 (240)
T ss_pred HHH-------------HHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEE
Confidence 111 1122223333333333444455555555 4488898888866 8888999998887443333
Q ss_pred C--CCCCccchhhhhhhcccccCCCcCc
Q 022097 244 T--PSISAHSVLGEFLFDVCVPKNVEGW 269 (302)
Q Consensus 244 ~--~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (302)
. =.-+||-...+.-.|.|+.+..|.|
T Consensus 213 ~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 213 AEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred EecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 2 3348999999999999999998887
No 88
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=62.59 E-value=39 Score=33.30 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=42.6
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHC-CCceEEEEcCCCCCcccccc--ChHhHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLAL-GGDVKLVKLNGSPHIGHYEY--YPIQYRAAITGLLEKA 162 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~-G~~V~~~~Fe~SpHV~H~R~--hPeeY~~aV~~fl~k~ 162 (302)
...|.+++|+..|.+.+.. .|.+..|+. =..-+.+.-+ |+||+-+ +|++-.+++.+|+++.
T Consensus 257 i~iPv~fi~G~~D~v~~~p---~~~~~~rk~vp~l~~~vv~~---~~gH~vqqe~p~~v~~~i~~f~~~~ 320 (322)
T KOG4178|consen 257 ITIPVLFIWGDLDPVLPYP---IFGELYRKDVPRLTERVVIE---GIGHFVQQEKPQEVNQAILGFINSF 320 (322)
T ss_pred cccceEEEEecCcccccch---hHHHHHHHhhccccceEEec---CCcccccccCHHHHHHHHHHHHHhh
Confidence 4469999999999999988 444444432 1112445554 6666655 5999999999999864
No 89
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=62.07 E-value=11 Score=35.98 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
...+|.|++.+.+|++||+..=.+..+..+++ |+-..=.+..|..-.+ +.+|...+.+|....
T Consensus 190 ~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~---~epl~v~g~gH~~~~~--~~~yi~~l~~f~~~~ 252 (258)
T KOG1552|consen 190 KITCPVLIIHGTDDEVVDFSHGKALYERCKEK---VEPLWVKGAGHNDIEL--YPEYIEHLRRFISSV 252 (258)
T ss_pred eccCCEEEEecccCceecccccHHHHHhcccc---CCCcEEecCCCccccc--CHHHHHHHHHHHHHh
Confidence 35689999999999999999888888888774 5555556778876554 457888888887654
No 90
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=57.52 E-value=23 Score=35.79 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=52.7
Q ss_pred CC-CCEEEEecCCCCccChHHHHHHHHHHHHCCC-ceEEEEcCCCCCcccccc--ChHhHHHHHHHHHHH
Q 022097 96 LG-TPFLIICSDNDELAPQQVIYNFARHLLALGG-DVKLVKLNGSPHIGHYEY--YPIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~-aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~-~V~~~~Fe~SpHV~H~R~--hPeeY~~aV~~fl~k 161 (302)
.. +|-|-+.++.|.|+||+..+...+.....+- +.+...+.+..|+|-+-. -+++=|-.|.+|+.+
T Consensus 336 I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~ 405 (406)
T TIGR01849 336 ITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRR 405 (406)
T ss_pred CcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHh
Confidence 45 8999999999999999999998887655443 455677778888888744 478888888888864
No 91
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=57.13 E-value=22 Score=32.35 Aligned_cols=55 Identities=25% Similarity=0.279 Sum_probs=41.4
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC------hHhHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY------PIQYRAAITGLL 159 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h------PeeY~~aV~~fl 159 (302)
..=|.+.+-|++|+.++++.-+..++.|-.. |-+-.|.||+-.+ |+-| ..+.+|+
T Consensus 116 lpfps~vvaSrnDp~~~~~~a~~~a~~wgs~--------lv~~g~~GHiN~~sG~g~wpeg~-~~l~~~~ 176 (181)
T COG3545 116 LPFPSVVVASRNDPYVSYEHAEDLANAWGSA--------LVDVGEGGHINAESGFGPWPEGY-ALLAQLL 176 (181)
T ss_pred CCCceeEEEecCCCCCCHHHHHHHHHhccHh--------heecccccccchhhcCCCcHHHH-HHHHHHh
Confidence 4459999999999999999999999998764 4466788887665 5555 3344443
No 92
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=56.70 E-value=24 Score=35.80 Aligned_cols=81 Identities=20% Similarity=0.270 Sum_probs=55.3
Q ss_pred HHHHHHh---hcCCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCcccccc---ChHhHHHH-HH
Q 022097 84 AEYWRAL---YNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY---YPIQYRAA-IT 156 (302)
Q Consensus 84 ~~~~~~L---~~~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~---hPeeY~~a-V~ 156 (302)
.+||+.- ..-...+.|-|+|.|.+|+++|...|- .+..+++= .|-.+.=.-..|.|-+.. .+..|... +.
T Consensus 306 deYY~~aSs~~~v~~I~VP~L~ina~DDPv~p~~~ip--~~~~~~np-~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ 382 (409)
T KOG1838|consen 306 DEYYKKASSSNYVDKIKVPLLCINAADDPVVPEEAIP--IDDIKSNP-NVLLVITSHGGHLGFLEGLWPSARTWMDKLLV 382 (409)
T ss_pred HHHHhhcchhhhcccccccEEEEecCCCCCCCcccCC--HHHHhcCC-cEEEEEeCCCceeeeeccCCCccchhHHHHHH
Confidence 4667532 111246789999999999999976443 34444432 455555566677777777 67788888 89
Q ss_pred HHHHHHHhhhH
Q 022097 157 GLLEKAASVYS 167 (302)
Q Consensus 157 ~fl~k~~~~~~ 167 (302)
+||.++.....
T Consensus 383 ef~~~~~~~~~ 393 (409)
T KOG1838|consen 383 EFLGNAIFQDE 393 (409)
T ss_pred HHHHHHHhhhc
Confidence 99998877643
No 93
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=55.91 E-value=33 Score=33.80 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=42.3
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccCh
Q 022097 99 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYP 148 (302)
Q Consensus 99 PrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hP 148 (302)
|.|++-.+.|.|.+ +-...++++++.|++|+...+++-.|+.|....-
T Consensus 270 ~tlv~~ag~D~L~D--~~~~Y~~~Lkk~Gv~v~~~~~e~~~H~~~~~~~~ 317 (336)
T KOG1515|consen 270 PTLVVVAGYDVLRD--EGLAYAEKLKKAGVEVTLIHYEDGFHGFHILDPS 317 (336)
T ss_pred ceEEEEeCchhhhh--hhHHHHHHHHHcCCeEEEEEECCCeeEEEecCCc
Confidence 68999999999996 4567888999999999988999999999998765
No 94
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=54.15 E-value=19 Score=33.39 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=45.3
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
..|-+-.+++.|++||.+--++..+..++.|.+++.+-|++-.| .- -|+|- ..|..|+++
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h---~~-~~~e~-~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGH---ST-SPQEL-DDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccc---cc-cHHHH-HHHHHHHHH
Confidence 35789999999999999999999999999999866666665544 32 35554 556666654
No 95
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=52.75 E-value=26 Score=34.44 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHH
Q 022097 94 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 162 (302)
Q Consensus 94 ~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~ 162 (302)
.+...|.||+....+.-++-+....+..-... |+.+.++++.|.=|+ ..|++...+|.+|++..
T Consensus 250 ~~~~~pvlfi~g~~S~fv~~~~~~~~~~~fp~----~e~~~ld~aGHwVh~-E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 250 GPYTGPVLFIKGLQSKFVPDEHYPRMEKIFPN----VEVHELDEAGHWVHL-EKPEEFIESISEFLEEP 313 (315)
T ss_pred cccccceeEEecCCCCCcChhHHHHHHHhccc----hheeecccCCceeec-CCHHHHHHHHHHHhccc
Confidence 45567999999999999987654444443332 888899999999997 57999999999998753
No 96
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=51.06 E-value=26 Score=35.51 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 135 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F 135 (302)
+-..-.+|..|+++|.++=+++++..+++|++|+....
T Consensus 294 ~~yvsYHs~~D~~~p~~~K~~l~~~l~~lgfda~l~lI 331 (403)
T PF11144_consen 294 IIYVSYHSIKDDLAPAEDKEELYEILKNLGFDATLHLI 331 (403)
T ss_pred eEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 35566789999999999999999999999999998887
No 97
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=45.23 E-value=41 Score=30.12 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.8
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLL 159 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl 159 (302)
...+.+.|-++.|++++|+.-.+.. .|. .....+|+ +|--.+-++|...|.+|+
T Consensus 133 ~~~~~lvll~~~DEvLd~~~a~~~~-----~~~--~~~i~~gg---dH~f~~f~~~l~~i~~f~ 186 (187)
T PF05728_consen 133 NPERYLVLLQTGDEVLDYREAVAKY-----RGC--AQIIEEGG---DHSFQDFEEYLPQIIAFL 186 (187)
T ss_pred CCccEEEEEecCCcccCHHHHHHHh-----cCc--eEEEEeCC---CCCCccHHHHHHHHHHhh
Confidence 3468999999999999996443332 233 23455666 777888999999999886
No 98
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=44.98 E-value=25 Score=34.97 Aligned_cols=58 Identities=19% Similarity=0.377 Sum_probs=47.2
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
....+++.++|.-||-..|.++-+.|. |..|+. -+..||+-|-.|.+-|.++|.+.++
T Consensus 290 ~~ii~V~A~~DaYVPr~~v~~Lq~~WP--GsEvR~---l~gGHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 290 SAIIFVAAKNDAYVPRHGVLSLQEIWP--GSEVRY---LPGGHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred CcEEEEEecCceEechhhcchHHHhCC--CCeEEE---ecCCcEEEeeechHHHHHHHHHHhh
Confidence 366788999999999998887766663 455544 4669999999999999999988765
No 99
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=43.70 E-value=63 Score=32.46 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=48.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccc--cccChHhHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH--YEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H--~R~hPeeY~~aV~~fl~k 161 (302)
.++|.|.+=...|-+-|.++..+.++..+..|. .+.+ +|+| || +-.+.+.|-..|.+||+.
T Consensus 305 i~~~~lv~gi~sD~lfp~~~~~~~~~~L~~~~~---~~~i-~S~~-GHDaFL~e~~~~~~~i~~fL~~ 367 (368)
T COG2021 305 IKAPVLVVGITSDWLFPPELQRALAEALPAAGA---LREI-DSPY-GHDAFLVESEAVGPLIRKFLAL 367 (368)
T ss_pred CccCEEEEEecccccCCHHHHHHHHHhccccCc---eEEe-cCCC-CchhhhcchhhhhHHHHHHhhc
Confidence 568999999999999999999999999988775 4455 3666 66 334566677889998863
No 100
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=41.68 E-value=45 Score=30.15 Aligned_cols=39 Identities=18% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG 137 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~ 137 (302)
...|+|||++=.+- -+..+++.+++|++|++|....|..
T Consensus 132 r~ylWlLsRtP~~s-~~~~~~ml~~ak~~Gfdv~~li~~~ 170 (174)
T COG3040 132 REYLWLLSRTPTLS-QETLKRMLEIAKRRGFDVSKLIFVQ 170 (174)
T ss_pred cceEEEEecCCCCC-HHHHHHHHHHHHHcCCCcceeEecC
Confidence 37999999986554 4678999999999999999999864
No 101
>PF09497 Med12: Transcription mediator complex subunit Med12; InterPro: IPR019035 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med12 is a component of the evolutionarily conserved Mediator complex []. The Med12 subunit may specifically regulate transcription of targets of the Wnt signaling pathway and SHH signaling pathway. Med12 is a negative regulator of the Gli3-dependent sonic hedgehog signaling pathway via its interaction with Gli3 within the Mediator. A complex is formed between Med12, Med13, CDK8 and CycC which is responsible for suppression of transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=39.84 E-value=9.7 Score=28.91 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=18.4
Q ss_pred CccchhhhhhhcccccCCCc
Q 022097 248 SAHSVLGEFLFDVCVPKNVE 267 (302)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~ 267 (302)
=|||.=|+.|||.|.-+||.
T Consensus 36 iPhg~k~~~ll~~l~~~~VP 55 (64)
T PF09497_consen 36 IPHGIKKEELLEQLCEYNVP 55 (64)
T ss_pred CCCcccHHHHHHHHHHcCCC
Confidence 39999999999999999986
No 102
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=39.33 E-value=52 Score=31.85 Aligned_cols=68 Identities=16% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHhhcCCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhH-HHHHHHHHHH
Q 022097 86 YWRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQY-RAAITGLLEK 161 (302)
Q Consensus 86 ~~~~L~~~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY-~~aV~~fl~k 161 (302)
|+|...-....++|.|+-.+-.|++||...+-+....+.. +.+.+.+....|= .+.++ ++...+|+++
T Consensus 251 Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i~~---~K~l~vyp~~~He-----~~~~~~~~~~~~~l~~ 319 (320)
T PF05448_consen 251 YFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAIPG---PKELVVYPEYGHE-----YGPEFQEDKQLNFLKE 319 (320)
T ss_dssp TT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC--S---SEEEEEETT--SS-----TTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhccCC---CeeEEeccCcCCC-----chhhHHHHHHHHHHhc
Confidence 3343333345789999999999999999999888887754 6888999887773 33444 7888888765
No 103
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=38.06 E-value=78 Score=32.04 Aligned_cols=52 Identities=17% Similarity=0.077 Sum_probs=37.5
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccC
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYY 147 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~h 147 (302)
.+.+|....||++|-+++.+||+.+......... ...+.+++=.|..=+-.+
T Consensus 330 ~i~~P~~l~~g~~D~l~~~~DV~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~ 381 (403)
T KOG2624|consen 330 NIKVPTALYYGDNDWLADPEDVLILLLVLPNSVI-KYIVPIPEYNHLDFIWGL 381 (403)
T ss_pred ccccCEEEEecCCcccCCHHHHHHHHHhcccccc-cccccCCCccceeeeecc
Confidence 3568999999999999999999999888776544 333335555555544433
No 104
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=37.75 E-value=18 Score=35.35 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=8.6
Q ss_pred CCCCEEEEecCCCCccC-hHHHHHHHHHHHHC
Q 022097 96 LGTPFLIICSDNDELAP-QQVIYNFARHLLAL 126 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp-~kdVE~ha~ear~~ 126 (302)
+..|-|+|||.+|+-|| |-|.++++++|++.
T Consensus 231 v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a 262 (303)
T PF08538_consen 231 VSKPLLVLYSGKDEYVPPWVDKEALLERWKAA 262 (303)
T ss_dssp --S-EEEEEE--TT------------------
T ss_pred CCCceEEEecCCCceecccccccccccccccc
Confidence 45699999999999986 47788899999863
No 105
>PF14417 MEDS: MEDS: MEthanogen/methylotroph, DcmR Sensory domain
Probab=36.59 E-value=36 Score=30.07 Aligned_cols=68 Identities=13% Similarity=0.078 Sum_probs=44.9
Q ss_pred HHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhccccCCCCc-cchhhhhhhhhhhhhccc
Q 022097 124 LALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEISGMEGT-HDEISELICDLQNVAVNS 200 (302)
Q Consensus 124 r~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 200 (302)
|..|.++-. ...-..|+.++-..+++|++.+..|++..+.. ||..=+=.. .+...++...|++.....
T Consensus 6 r~s~~~~~~-~~~~g~H~c~~Y~~~~e~~~~~~~Fi~~GL~~--------ge~~l~v~~~~~~~~~l~~~L~~~~~d~ 74 (191)
T PF14417_consen 6 RKSGIDAIG-DIPWGDHICAFYDDEEELLEVLVPFIREGLAR--------GERCLYVAPDPRRVEELRDELRKAGPDV 74 (191)
T ss_pred ccccCcccc-CCCCCceEEEEECCHHHHHHHHHHHHHHHHHC--------CCeEEEEECCCCCHHHHHHHHHhcCCch
Confidence 445666554 56667899999999999999999999977665 222222112 344455566777664443
No 106
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=33.24 E-value=55 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.316 Sum_probs=28.5
Q ss_pred CCCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCC
Q 022097 93 SVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNG 137 (302)
Q Consensus 93 ~~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~ 137 (302)
......|.|-+++++|.+++.+.-+.+++..... .+...+++
T Consensus 157 ~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g 198 (212)
T PF03959_consen 157 EPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG 198 (212)
T ss_dssp -TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS
T ss_pred cccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC
Confidence 3456789999999999999999889998888774 44445543
No 107
>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH
Probab=30.75 E-value=97 Score=24.71 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCCccChHHH---HHHHHHHHHCCCceE----EEEcCCC---CCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhcc
Q 022097 106 DNDELAPQQVI---YNFARHLLALGGDVK----LVKLNGS---PHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGE 175 (302)
Q Consensus 106 kaD~LVp~kdV---E~ha~ear~~G~~V~----~~~Fe~S---pHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~ 175 (302)
.+-.|||.+.. ...-..+++.|+++. .+.-..+ .=..|-..||.+|-+.|.+=|+++..
T Consensus 17 qaHHII~~~~~~~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~~~~~~H~g~H~~~Y~~~V~~~L~~~~~----------- 85 (109)
T PF14412_consen 17 QAHHIIPKNNFERSPKLRKILEKYGIDINDPENGVWLPNSEKPGRPPHRGRHPNEYNKYVRERLDKIEN----------- 85 (109)
T ss_pred ccceecCccchhccHHHHHHHHHcCCCcCCccceeeeeccCCCCcCCcCCCCcHHHHHHHHHHHHHHHH-----------
Confidence 44556666643 444455567787742 2222211 11235589999999999998888776
Q ss_pred ccCCCCccchhhhhhhhhhhh
Q 022097 176 ISGMEGTHDEISELICDLQNV 196 (302)
Q Consensus 176 ~~~~~g~~~~~~~~~~~~~~~ 196 (302)
...+..+++.+-+..|++-
T Consensus 86 --~~~~~~~~~~~~l~~i~~~ 104 (109)
T PF14412_consen 86 --SKKENREEFRKELQKIKNE 104 (109)
T ss_pred --HhhcCHHHHHHHHHHHHHH
Confidence 1223455555555555543
No 108
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=30.63 E-value=93 Score=30.42 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLA 125 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~ 125 (302)
..+|.||.||..|.||.-+.+++.+..-+.
T Consensus 211 ~~ikvli~ygg~DhLIEeeI~~E~a~~f~~ 240 (297)
T PF06342_consen 211 KPIKVLIAYGGKDHLIEEEISFEFAMKFKG 240 (297)
T ss_pred CCCcEEEEEcCcchhhHHHHHHHHHHHhCC
Confidence 447999999999999999999999886643
No 109
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=28.29 E-value=1.1e+02 Score=31.33 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=38.7
Q ss_pred ChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHH
Q 022097 112 PQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGL 158 (302)
Q Consensus 112 p~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~f 158 (302)
.-++++.+.+.++++|.+|.-+.| |||--+.+++-|.+++.+.
T Consensus 191 ~~~~~~~lLd~ak~l~lnvvGvsf----HvGSgc~d~~~y~~Ai~dA 233 (448)
T KOG0622|consen 191 SLDNCRHLLDMAKELELNVVGVSF----HVGSGCTDLQAYRDAISDA 233 (448)
T ss_pred CHHHHHHHHHHHHHcCceEEEEEE----EecCCCCCHHHHHHHHHHH
Confidence 567899999999999999999988 8999999999999998653
No 110
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.78 E-value=63 Score=26.88 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=37.8
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHC-CCceEEEEcCCCCCccccccChHhHHHH
Q 022097 99 PFLIICSDNDELAPQQVIYNFARHLLAL-GGDVKLVKLNGSPHIGHYEYYPIQYRAA 154 (302)
Q Consensus 99 PrLYLYSkaD~LVp~kdVE~ha~ear~~-G~~V~~~~Fe~SpHV~H~R~hPeeY~~a 154 (302)
+.++.||. |.--.-+-|.++++.+++. |++|..=.|+... ++ +..|.++...
T Consensus 2 kVfI~Ys~-d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~-i~--~~g~~~W~~~ 54 (150)
T PF08357_consen 2 KVFISYSH-DSEEHKEWVLALAEFLRQNCGIDVILDQWELNE-IA--RQGPPRWMER 54 (150)
T ss_pred eEEEEeCC-CCHHHHHHHHHHHHHHHhccCCceeecHHhhcc-cc--cCCHHHHHHH
Confidence 46788998 5555568899999999999 9999988887522 11 3356666544
No 111
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=27.71 E-value=60 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCE-EEEecCCCCccChHHHHHHHHHHHHC
Q 022097 97 GTPF-LIICSDNDELAPQQVIYNFARHLLAL 126 (302)
Q Consensus 97 ~aPr-LYLYSkaD~LVp~kdVE~ha~ear~~ 126 (302)
..|. +++.++.|.+||.+..++.++.+++.
T Consensus 167 ~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 167 PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 4465 57889999999999999999999886
No 112
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=27.59 E-value=16 Score=27.36 Aligned_cols=8 Identities=63% Similarity=1.086 Sum_probs=1.7
Q ss_pred hhcccccCC
Q 022097 257 LFDVCVPKN 265 (302)
Q Consensus 257 ~~~~~~~~~ 265 (302)
||| ||||.
T Consensus 47 lyD-kVP~~ 54 (57)
T PF05321_consen 47 LYD-KVPKS 54 (57)
T ss_dssp --S-S--CH
T ss_pred hhh-hCCHH
Confidence 444 44443
No 113
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=27.05 E-value=70 Score=30.48 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=41.3
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHH
Q 022097 94 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAI 155 (302)
Q Consensus 94 ~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV 155 (302)
.+..||.|=.|+.+|.+||-++-.++|+.... -+.+.-|+.-|. |-.|.++-...+
T Consensus 196 Id~~C~VLTvhGs~D~IVPve~AkefAk~i~n----H~L~iIEgADHn--yt~~q~~l~~lg 251 (269)
T KOG4667|consen 196 IDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN----HKLEIIEGADHN--YTGHQSQLVSLG 251 (269)
T ss_pred cCccCceEEEeccCCceeechhHHHHHHhccC----CceEEecCCCcC--ccchhhhHhhhc
Confidence 56789999999999999999999999988765 345666777774 344444443333
No 114
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=26.92 E-value=1.3e+02 Score=30.18 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
..+|.++||+..|=+=. ..=.+.-..+.. ..|+...-.++.|- -|-.+|+.+.+.|.+++++
T Consensus 302 ~~~pv~fiyG~~dWmD~-~~g~~~~~~~~~--~~~~~~~v~~aGHh-vylDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 302 KDVPVTFIYGDRDWMDK-NAGLEVTKSLMK--EYVEIIIVPGAGHH-VYLDNPEFFNQIVLEECDK 363 (365)
T ss_pred cCCCEEEEecCcccccc-hhHHHHHHHhhc--ccceEEEecCCCce-eecCCHHHHHHHHHHHHhc
Confidence 35799999999885432 222222222212 23666666666662 2567799999999999875
No 115
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=26.65 E-value=33 Score=34.88 Aligned_cols=109 Identities=21% Similarity=0.252 Sum_probs=61.7
Q ss_pred CCCCEEEEecCCCCccChHHHHHHH-HHHHHCCCceEEEEcCCCCCccc--cccChHhHHHHHHHHHHHHHhhhHHHhhh
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFA-RHLLALGGDVKLVKLNGSPHIGH--YEYYPIQYRAAITGLLEKAASVYSQRIRQ 172 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha-~ear~~G~~V~~~~Fe~SpHV~H--~R~hPeeY~~aV~~fl~k~~~~~~~~~~l 172 (302)
...|.+.+++.-|.+-. |.-... +.+..+|+-+-.+.-.|..+..| ++.+-++++++|-+++....-+=..++++
T Consensus 188 ~p~P~VIv~gGlDs~qe--D~~~l~~~~l~~rGiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~~ 265 (411)
T PF06500_consen 188 KPYPTVIVCGGLDSLQE--DLYRLFRDYLAPRGIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLDYLASRPWVDHTRVGA 265 (411)
T ss_dssp S-EEEEEEE--TTS-GG--GGHHHHHCCCHHCT-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred CCCCEEEEeCCcchhHH--HHHHHHHHHHHhCCCEEEEEccCCCcccccCCCCcCHHHHHHHHHHHHhcCCccChhheEE
Confidence 34599999999998874 333333 34678999998888888777665 46667799999999988754332234455
Q ss_pred hccccCCCCccchhhhhhhhhhhhhccccccccc-cccCC-CCcccc
Q 022097 173 LGEISGMEGTHDEISELICDLQNVAVNSNQSLRR-VAVEP-SDHFFL 217 (302)
Q Consensus 173 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~f~~ 217 (302)
-|-++|- . --++-|+...+ +|+. |+++| .+|||.
T Consensus 266 ~G~SfGG---y-------~AvRlA~le~~-RlkavV~~Ga~vh~~ft 301 (411)
T PF06500_consen 266 WGFSFGG---Y-------YAVRLAALEDP-RLKAVVALGAPVHHFFT 301 (411)
T ss_dssp EEETHHH---H-------HHHHHHHHTTT-T-SEEEEES---SCGGH
T ss_pred EEeccch---H-------HHHHHHHhccc-ceeeEeeeCchHhhhhc
Confidence 5555543 1 22333444444 7777 56676 477664
No 116
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=25.38 E-value=19 Score=27.99 Aligned_cols=15 Identities=60% Similarity=0.833 Sum_probs=8.9
Q ss_pred hhhhhhhcc-cccCCC
Q 022097 252 VLGEFLFDV-CVPKNV 266 (302)
Q Consensus 252 ~~~~~~~~~-~~~~~~ 266 (302)
+.|--|||+ ||||.|
T Consensus 51 ~~~~kLyD~gkVP~sV 66 (71)
T PRK10391 51 VSGGRLFDLGQVPKSV 66 (71)
T ss_pred HhCccccccccCCHHH
Confidence 345456774 677665
No 117
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=25.28 E-value=97 Score=27.13 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=31.0
Q ss_pred CCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 022097 97 GTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 135 (302)
Q Consensus 97 ~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F 135 (302)
....++|||++= -++.+..+++.+.++++|+++....|
T Consensus 134 ~~~~~wIlsR~p-~l~~~~~~~~~~~~~~~G~d~~~l~~ 171 (177)
T PRK10477 134 DRDYLWILSRTP-TISDEVKQQMLAVATREGFDVSKLIW 171 (177)
T ss_pred CCCEEEEEeCCC-CCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 357999999864 44567889999999999999877776
No 118
>PRK10945 gene expression modulator; Provisional
Probab=24.15 E-value=18 Score=28.21 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=4.6
Q ss_pred hhhcccccCCC
Q 022097 256 FLFDVCVPKNV 266 (302)
Q Consensus 256 ~~~~~~~~~~~ 266 (302)
-||| ||||.|
T Consensus 58 KLyD-kVP~~v 67 (72)
T PRK10945 58 KLYD-KIPSSV 67 (72)
T ss_pred hhHh-hcCHHH
Confidence 3444 444443
No 119
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=23.02 E-value=98 Score=24.33 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHCCCceEEEE
Q 022097 113 QQVIYNFARHLLALGGDVKLVK 134 (302)
Q Consensus 113 ~kdVE~ha~ear~~G~~V~~~~ 134 (302)
-..|.+||+.+|+.|++|+.+.
T Consensus 33 RtaVwK~Iq~Lr~~G~~I~s~~ 54 (79)
T COG1654 33 RTAVWKHIQQLREEGVDIESVR 54 (79)
T ss_pred HHHHHHHHHHHHHhCCceEecC
Confidence 3579999999999999998764
No 120
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=22.55 E-value=1.1e+02 Score=32.49 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=34.2
Q ss_pred CCCCCEEEEecCCCCccChHHHHHHH-------HHHHHCCCceEEEEcCCCCCcccc
Q 022097 95 DLGTPFLIICSDNDELAPQQVIYNFA-------RHLLALGGDVKLVKLNGSPHIGHY 144 (302)
Q Consensus 95 ~~~aPrLYLYSkaD~LVp~kdVE~ha-------~ear~~G~~V~~~~Fe~SpHV~H~ 144 (302)
+.++|...++|+.|.|+|.+.+-..| ++.+..|-.+-...=+.-.|-|-+
T Consensus 295 ~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHLGIF 351 (581)
T PF11339_consen 295 NIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHLGIF 351 (581)
T ss_pred hCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCceEEE
Confidence 46789999999999999999884443 455666766555444444444443
No 121
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.93 E-value=1.7e+02 Score=27.18 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=44.4
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 94 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 94 ~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
.+.++|-|+++.++|+++++..+-+-+ ++.+.+.+.-.++-|-=|-+. ++-.++|.+||+
T Consensus 146 ~P~P~~~lvi~g~~Ddvv~l~~~l~~~-----~~~~~~~i~i~~a~HFF~gKl--~~l~~~i~~~l~ 205 (210)
T COG2945 146 APCPSPGLVIQGDADDVVDLVAVLKWQ-----ESIKITVITIPGADHFFHGKL--IELRDTIADFLE 205 (210)
T ss_pred cCCCCCceeEecChhhhhcHHHHHHhh-----cCCCCceEEecCCCceecccH--HHHHHHHHHHhh
Confidence 466789999999999888766554332 337888888999999866554 456677778775
No 122
>PF15585 Imm46: Immunity protein 46
Probab=21.54 E-value=2.4e+02 Score=24.43 Aligned_cols=65 Identities=26% Similarity=0.298 Sum_probs=44.6
Q ss_pred EEEecCCCC-ccChHHHHHHHHHHHHCCCc--eEEEEcCCC--CCccccccChHhHHHHHHHHHHHHHhh
Q 022097 101 LIICSDNDE-LAPQQVIYNFARHLLALGGD--VKLVKLNGS--PHIGHYEYYPIQYRAAITGLLEKAASV 165 (302)
Q Consensus 101 LYLYSkaD~-LVp~kdVE~ha~ear~~G~~--V~~~~Fe~S--pHV~H~R~hPeeY~~aV~~fl~k~~~~ 165 (302)
.+=|+.+|. .-.-+.+.+..+...++++. |.....+|+ -|++.+-.|+-+++..|-+..++...+
T Consensus 11 ~~s~~~~D~~~~~~~~~~~i~~~i~~~~~~~~~~L~~~NG~~~l~~~g~~NHr~~~~~eii~lf~~i~e~ 80 (129)
T PF15585_consen 11 RESYSDEDDEAKLEKIIQEIQERISELDWGGLVDLRAMNGSYFLHFGGLSNHRGQEAPEIIELFERIAEI 80 (129)
T ss_pred ecccccCcchhhHHHHHHHHHHHHHhcCCCCeEEEEecCCcEEEEEccccCCCccchHHHHHHHHHHHHh
Confidence 345666776 33344455555555666665 666655555 599999999999999998888876665
No 123
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=21.31 E-value=1.1e+02 Score=28.38 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=35.6
Q ss_pred HHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 116 IYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 116 VE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
+++.++.+++..++.-.+.+.+.-.+||- .++++|.++|+.+=+
T Consensus 129 ~~~~~~~l~~~~~~~v~~~~~~~D~~GH~-~~~~~~~~~ie~~D~ 172 (252)
T PF01676_consen 129 AEAAIEALKKDKYDFVFVHVKGTDEAGHR-GDPEAYIEAIERIDR 172 (252)
T ss_dssp HHHHHHHHHHTTSSEEEEEEEHHHHHHTT-T-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCeEEEeecCcchhhcc-CCHHHHHHHHHHHHH
Confidence 57778888888899988888899999995 689999998775544
No 124
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.20 E-value=32 Score=28.64 Aligned_cols=12 Identities=25% Similarity=0.930 Sum_probs=8.4
Q ss_pred hhhcccccCCCc
Q 022097 256 FLFDVCVPKNVE 267 (302)
Q Consensus 256 ~~~~~~~~~~~~ 267 (302)
++||++||.||+
T Consensus 104 ~v~Dla~Pr~i~ 115 (135)
T PF01488_consen 104 LVIDLAVPRDID 115 (135)
T ss_dssp EEEES-SS-SB-
T ss_pred ceeccccCCCCC
Confidence 789999999997
No 125
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=20.92 E-value=95 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=27.1
Q ss_pred CEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc
Q 022097 99 PFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL 135 (302)
Q Consensus 99 PrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F 135 (302)
-.|+|.|++ +-.+.+.+++..+.++++|+++....+
T Consensus 105 ~~~WILsR~-p~~~~~~~~~~~~~~~~~G~d~~~l~~ 140 (143)
T PF08212_consen 105 EYLWILSRT-PQLSEETYAEILDRAKQQGYDVSKLIW 140 (143)
T ss_dssp CEEEEEESS-SS--HHHHHHHHHHHHHTT--GGGEEE
T ss_pred CEEEEEeCC-CCCCHHHHHHHHHHHHHcCCCHHHeEE
Confidence 689999998 666888999999999999999865544
No 126
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.71 E-value=2.9e+02 Score=25.92 Aligned_cols=43 Identities=14% Similarity=-0.004 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHCCCceEE-EEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 113 QQVIYNFARHLLALGGDVKL-VKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 113 ~kdVE~ha~ear~~G~~V~~-~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
.+.+++.++.+|++|..|.. +.+.++ .+..|+.|.+.+.+..+
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~~~~-----~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICYTGS-----PVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCC-----CCCCHHHHHHHHHHHHH
Confidence 56788888888999987754 344444 46677777777666544
No 127
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=20.65 E-value=4.3e+02 Score=26.49 Aligned_cols=65 Identities=32% Similarity=0.444 Sum_probs=47.2
Q ss_pred CCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHH-----HHHHHHHHHHhhhHHHh
Q 022097 98 TPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRA-----AITGLLEKAASVYSQRI 170 (302)
Q Consensus 98 aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~-----aV~~fl~k~~~~~~~~~ 170 (302)
++.++|+-.+|.- .-+.+++.++.+.+.|..|....+++ -+||++|.. ++.+.++++........
T Consensus 300 ~~~vvl~~D~D~a-G~~aa~r~~~~l~~~g~~v~v~~lp~-------gkDpdd~l~~~g~~~~~~~l~~a~~~~~f~~ 369 (415)
T TIGR01391 300 ADEIILCFDGDKA-GRKAALRAIELLLPLGINVKVIKLPG-------GKDPDEYLRKEGVEALKKLLENSKSLIEFLI 369 (415)
T ss_pred CCeEEEEeCCCHH-HHHHHHHHHHHHHHcCCeEEEEECCC-------CCCHHHHHHHhCHHHHHHHHhcCCCHHHHHH
Confidence 3689999999973 44567777888888899999888864 379999975 46666666444443333
No 128
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=20.63 E-value=2e+02 Score=27.81 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEc-CCCCCccccccChHhHHHHHHHHHHH
Q 022097 96 LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKL-NGSPHIGHYEYYPIQYRAAITGLLEK 161 (302)
Q Consensus 96 ~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~F-e~SpHV~H~R~hPeeY~~aV~~fl~k 161 (302)
+++|.+++-..+|+-+|+..++.++.--++. ..++..- +.-.-+|||+-..+......+++|+.
T Consensus 215 VrtPi~~~~~~DD~w~P~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w 279 (281)
T COG4757 215 VRTPITFSRALDDPWAPPASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGW 279 (281)
T ss_pred hcCceeeeccCCCCcCCHHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHh
Confidence 5679999999999999999999998866553 2222211 11125999998888776666666653
No 129
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=20.27 E-value=50 Score=35.32 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHC------CCceEEEEcCCCCCccccccCh-HhHHHHHHHHHHHHHhh--hHHHhhhhccccCCCCc
Q 022097 112 PQQVIYNFARHLLAL------GGDVKLVKLNGSPHIGHYEYYP-IQYRAAITGLLEKAASV--YSQRIRQLGEISGMEGT 182 (302)
Q Consensus 112 p~kdVE~ha~ear~~------G~~V~~~~Fe~SpHV~H~R~hP-eeY~~aV~~fl~k~~~~--~~~~~~l~~~~~~~~g~ 182 (302)
-.+|||+|+..+|.. |.--+...++=|.||-|+-.++ ++-|..|.+.++..-.+ |--...+.|...|+ .
T Consensus 437 ls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~evW~ti~n~f~~e~n~av~~~~~~~~~f~~~~--d 514 (772)
T KOG2203|consen 437 LSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKEVWDTIRNLFRRETNTAVYGLSNAVYGFEIGL--D 514 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhccccccHHHHHHHHHhccchhHHHHhhccccccccc--c
Confidence 357999999877643 2223445688899999999986 88999998877764433 44445888999888 5
Q ss_pred cchhhhhhhhhhhhh
Q 022097 183 HDEISELICDLQNVA 197 (302)
Q Consensus 183 ~~~~~~~~~~~~~~~ 197 (302)
+.+..+-+-||++-|
T Consensus 515 e~t~~~m~~nlk~~a 529 (772)
T KOG2203|consen 515 EETRDKMVKNLKNYA 529 (772)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666677788888754
No 130
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=20.15 E-value=1.1e+02 Score=24.61 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=37.5
Q ss_pred ecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHHHHHhhhHHHhhhhccccCCCCcc
Q 022097 104 CSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKAASVYSQRIRQLGEISGMEGTH 183 (302)
Q Consensus 104 YSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~k~~~~~~~~~~l~~~~~~~~g~~ 183 (302)
.|++|+|. -++.+++-..+.|. .|...+.++.+++...+.. +.+.
T Consensus 7 WS~eDEi~---iL~gl~~~~~~~G~------------------~p~~d~~~f~~~vk~~l~~--------------~~s~ 51 (98)
T PF04504_consen 7 WSEEDEIV---ILQGLIDFRAKTGK------------------SPQPDMNAFYDFVKGSLSF--------------DVSK 51 (98)
T ss_pred CCchHHHH---HHHHHHHHHHhcCC------------------CCCccHHHHHHHHHHHccC--------------CCCH
Confidence 78999998 57778887777776 3444666777776655443 3355
Q ss_pred chhhhhhhhhhh
Q 022097 184 DEISELICDLQN 195 (302)
Q Consensus 184 ~~~~~~~~~~~~ 195 (302)
.++.+-|..|++
T Consensus 52 ~Ql~~KirrLK~ 63 (98)
T PF04504_consen 52 NQLYDKIRRLKK 63 (98)
T ss_pred HHHHHHHHHHHH
Confidence 566666666654
No 131
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.12 E-value=1.6e+02 Score=28.05 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=44.2
Q ss_pred CCCCCCEEEEecCCCCccChHHHHHHHHHHHHCCCceEEEEcCCCCCccccccChHhHHHHHHHHHH
Q 022097 94 VDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLE 160 (302)
Q Consensus 94 ~~~~aPrLYLYSkaD~LVp~kdVE~ha~ear~~G~~V~~~~Fe~SpHV~H~R~hPeeY~~aV~~fl~ 160 (302)
.+..+|...+.++.|.+|.++++.+..++++. +.+.+.|+|. |- ++.+..++-.+.+.+.|.
T Consensus 173 ~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdGg-HF-fl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 173 APLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDGG-HF-FLNQQREEVLARLEQHLA 234 (244)
T ss_pred CCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecCc-ce-ehhhhHHHHHHHHHHHhh
Confidence 46789999999999999998877766655554 7889999863 21 334445566666555554
Done!