BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022098
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H8S|A Chain A, Crystal Structure Of Human Appl2barph Domain
 pdb|4H8S|B Chain B, Crystal Structure Of Human Appl2barph Domain
 pdb|4H8S|C Chain C, Crystal Structure Of Human Appl2barph Domain
 pdb|4H8S|D Chain D, Crystal Structure Of Human Appl2barph Domain
          Length = 407

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 143 GFQPCEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILS 198
           GF   +I   K G  +F+   D+F  S + M++++       E E +R  + E+LS
Sbjct: 225 GFAHGQINFFKKGAEMFSKRMDSFLSSVADMVQSI-QVELEAEAEKMRVSQQELLS 279


>pdb|3U52|A Chain A, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
           Hydroxylase From Pseudomonas Sp. Ox1
 pdb|3U52|B Chain B, X-Ray Crystal Structure Of Xenon-Pressurized Phenol
           Hydroxylase From Pseudomonas Sp. Ox1
          Length = 511

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 210 YREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243
           Y +V  QF+   +R A +MQAIDEL   + + HA
Sbjct: 115 YSKVGRQFSGAGARVACQMQAIDELRHSQTQQHA 148


>pdb|2INP|A Chain A, Structure Of The Phenol Hydroxylase-Regulatory Protein
           Complex
 pdb|2INP|B Chain B, Structure Of The Phenol Hydroxylase-Regulatory Protein
           Complex
          Length = 494

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 210 YREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243
           Y +V  QF+   +R A +MQAIDEL   + + HA
Sbjct: 110 YSKVGRQFSGAGARVACQMQAIDELRHSQTQQHA 143


>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
          Length = 854

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 175 EALCAAPFTEEKENLRAVEAEILSKRAELSKFESEY---REVLAQFTEMTSR 223
           EAL      + +E L+A+EAEI     E++K  +E+   RE+L +  E   R
Sbjct: 418 EALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHR 469


>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
           Chloride And Adp
          Length = 397

 Score = 27.7 bits (60), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 175 EALCAAPFTEEKENLRAVEAEILSKRAELSKFESEY---REVLAQFTEMTSR 223
           EAL      + +E L+A+EAEI     E++K  +E+   RE+L +  E   R
Sbjct: 281 EALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHR 332


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.368 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,635,594
Number of Sequences: 62578
Number of extensions: 270713
Number of successful extensions: 1047
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 13
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)