Query 022098
Match_columns 302
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:00:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0713 Molecular chaperone (D 100.0 6E-36 1.3E-40 285.3 4.1 225 1-257 102-326 (336)
2 KOG1690 emp24/gp25L/p24 family 91.1 1.5 3.2E-05 41.1 8.8 29 148-176 93-123 (215)
3 COG1422 Predicted membrane pro 84.1 2.3 5E-05 39.5 5.5 40 194-233 72-112 (201)
4 PF03961 DUF342: Protein of un 64.4 1.2E+02 0.0027 30.4 12.2 62 187-248 334-408 (451)
5 KOG1962 B-cell receptor-associ 63.5 31 0.00068 32.5 7.3 59 187-245 151-209 (216)
6 PF05546 She9_MDM33: She9 / Md 63.0 38 0.00081 31.8 7.7 52 187-238 32-83 (207)
7 cd07651 F-BAR_PombeCdc15_like 60.8 60 0.0013 29.6 8.6 56 187-242 150-205 (236)
8 PF13711 DUF4160: Domain of un 58.4 20 0.00043 26.9 4.3 46 156-204 17-62 (66)
9 KOG2589 Histone tail methylase 58.1 8.9 0.00019 39.1 3.0 79 89-179 175-253 (453)
10 PF08053 Tna_leader: Tryptopha 56.3 5.7 0.00012 25.3 0.8 15 287-301 10-24 (24)
11 PF10805 DUF2730: Protein of u 54.4 74 0.0016 26.2 7.4 52 187-238 49-102 (106)
12 PRK14143 heat shock protein Gr 54.1 81 0.0017 29.9 8.4 45 187-231 67-111 (238)
13 PF02183 HALZ: Homeobox associ 53.8 52 0.0011 23.6 5.6 37 205-241 2-38 (45)
14 PRK09806 tryptophanase leader 53.6 6.8 0.00015 25.3 0.9 15 287-301 10-24 (26)
15 cd07655 F-BAR_PACSIN The F-BAR 52.6 82 0.0018 29.4 8.2 52 186-237 167-218 (258)
16 COG1777 Predicted transcriptio 51.7 98 0.0021 29.4 8.5 96 148-243 72-174 (217)
17 PF01105 EMP24_GP25L: emp24/gp 51.1 5 0.00011 33.2 0.0 64 152-215 70-140 (183)
18 PRK14154 heat shock protein Gr 51.0 83 0.0018 29.4 7.9 45 187-231 52-96 (208)
19 PF01025 GrpE: GrpE; InterPro 50.8 33 0.00072 29.2 5.0 61 187-247 11-80 (165)
20 PRK14139 heat shock protein Gr 50.5 96 0.0021 28.4 8.1 45 187-231 32-76 (185)
21 PF13094 CENP-Q: CENP-Q, a CEN 49.5 1.4E+02 0.003 25.7 8.6 58 187-244 27-84 (160)
22 PF14453 ThiS-like: ThiS-like 48.4 14 0.0003 28.1 2.0 22 140-161 33-54 (57)
23 PF10498 IFT57: Intra-flagella 47.2 1.1E+02 0.0024 30.5 8.6 62 185-249 253-314 (359)
24 PF08317 Spc7: Spc7 kinetochor 46.7 1.2E+02 0.0026 29.3 8.6 53 187-239 216-268 (325)
25 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.3 1.5E+02 0.0033 24.9 8.2 51 187-240 17-67 (132)
26 PRK14162 heat shock protein Gr 45.8 1.2E+02 0.0027 27.9 8.1 45 187-231 39-83 (194)
27 PRK14148 heat shock protein Gr 45.7 1.3E+02 0.0028 27.8 8.2 45 187-231 40-84 (195)
28 PRK14158 heat shock protein Gr 45.5 1.5E+02 0.0031 27.4 8.5 46 187-232 40-85 (194)
29 smart00787 Spc7 Spc7 kinetocho 45.4 1.2E+02 0.0027 29.6 8.4 53 187-239 211-263 (312)
30 cd07647 F-BAR_PSTPIP The F-BAR 43.0 1.7E+02 0.0037 26.8 8.6 54 187-240 153-206 (239)
31 COG4026 Uncharacterized protei 42.7 1.4E+02 0.0031 29.0 8.1 53 195-247 113-167 (290)
32 KOG0774 Transcription factor P 42.5 67 0.0014 31.7 6.0 39 196-237 102-140 (334)
33 PF11418 Scaffolding_pro: Phi2 42.2 74 0.0016 26.6 5.4 63 186-248 11-73 (97)
34 PHA03161 hypothetical protein; 41.9 97 0.0021 27.9 6.5 47 187-233 61-107 (150)
35 PRK14140 heat shock protein Gr 41.4 1.7E+02 0.0036 27.0 8.2 45 187-231 37-81 (191)
36 PF05278 PEARLI-4: Arabidopsis 40.4 1.4E+02 0.0031 29.1 7.9 40 189-228 202-241 (269)
37 PHA00489 scaffolding protein 40.4 82 0.0018 26.5 5.4 58 186-243 12-69 (101)
38 PF12325 TMF_TATA_bd: TATA ele 40.2 1.4E+02 0.0031 25.4 7.2 24 187-210 23-46 (120)
39 PRK11637 AmiB activator; Provi 40.2 1.6E+02 0.0035 29.2 8.6 28 187-214 47-74 (428)
40 PRK14145 heat shock protein Gr 39.9 1.9E+02 0.004 26.9 8.3 45 187-231 45-89 (196)
41 cd07681 F-BAR_PACSIN3 The F-BA 38.8 1.2E+02 0.0026 29.1 7.1 49 186-234 167-215 (258)
42 PHA02562 46 endonuclease subun 38.6 1.9E+02 0.0042 29.0 8.9 71 177-247 289-369 (562)
43 PF10146 zf-C4H2: Zinc finger- 38.4 2.7E+02 0.0057 26.3 9.2 25 187-211 25-49 (230)
44 KOG0964 Structural maintenance 38.3 1.3E+02 0.0028 34.5 8.1 56 188-243 419-474 (1200)
45 PRK14155 heat shock protein Gr 37.5 1.1E+02 0.0023 28.6 6.4 43 188-230 14-56 (208)
46 PRK14147 heat shock protein Gr 37.4 1.5E+02 0.0033 26.6 7.2 45 187-231 18-62 (172)
47 PF04949 Transcrip_act: Transc 36.5 2.4E+02 0.0051 25.7 8.1 53 187-239 91-143 (159)
48 PRK14160 heat shock protein Gr 36.2 2.2E+02 0.0048 26.7 8.2 45 187-231 61-105 (211)
49 cd07672 F-BAR_PSTPIP2 The F-BA 36.2 1.8E+02 0.0039 27.2 7.7 48 186-233 153-200 (240)
50 PRK09039 hypothetical protein; 36.0 2.7E+02 0.0059 27.4 9.3 67 187-253 144-214 (343)
51 PF08614 ATG16: Autophagy prot 35.4 2.6E+02 0.0056 25.0 8.3 50 187-236 130-179 (194)
52 PF04111 APG6: Autophagy prote 34.9 3.2E+02 0.0069 26.6 9.5 36 187-222 50-85 (314)
53 PF09903 DUF2130: Uncharacteri 34.7 2.1E+02 0.0046 27.4 8.1 62 187-248 173-238 (267)
54 PF06103 DUF948: Bacterial pro 34.6 2.2E+02 0.0048 22.1 7.9 56 187-242 26-81 (90)
55 smart00721 BAR BAR domain. 34.1 1E+02 0.0022 27.0 5.5 36 202-240 171-206 (239)
56 COG3883 Uncharacterized protei 34.0 2.8E+02 0.0061 27.0 8.8 58 187-244 45-105 (265)
57 PRK14144 heat shock protein Gr 33.9 1.8E+02 0.0039 27.0 7.3 45 187-231 45-89 (199)
58 PRK14151 heat shock protein Gr 33.6 2.2E+02 0.0047 25.8 7.6 45 187-231 20-64 (176)
59 PF04888 SseC: Secretion syste 33.4 3.1E+02 0.0067 25.9 9.0 62 187-248 244-305 (306)
60 PRK14141 heat shock protein Gr 33.3 1.9E+02 0.0042 27.0 7.4 41 191-231 35-75 (209)
61 PF10211 Ax_dynein_light: Axon 32.9 3.7E+02 0.0081 24.3 9.2 49 196-244 122-170 (189)
62 PRK05771 V-type ATP synthase s 32.7 3E+02 0.0066 29.0 9.6 36 187-222 215-250 (646)
63 PRK14153 heat shock protein Gr 32.7 1.4E+02 0.003 27.6 6.2 45 187-231 33-77 (194)
64 PF15030 DUF4527: Protein of u 31.9 2.9E+02 0.0063 27.1 8.4 60 187-246 16-75 (277)
65 PRK14146 heat shock protein Gr 31.6 2.5E+02 0.0054 26.3 7.8 45 187-231 54-98 (215)
66 PRK14156 heat shock protein Gr 31.4 2E+02 0.0043 26.2 7.0 40 191-230 31-70 (177)
67 KOG0239 Kinesin (KAR3 subfamil 31.4 2.3E+02 0.005 30.7 8.6 64 188-251 249-315 (670)
68 PF05377 FlaC_arch: Flagella a 31.2 2E+02 0.0043 21.9 5.8 6 230-235 36-41 (55)
69 cd00890 Prefoldin Prefoldin is 30.9 2.7E+02 0.0059 22.3 7.2 17 152-168 65-81 (129)
70 PF14347 DUF4399: Domain of un 30.8 38 0.00083 27.3 2.1 25 142-166 49-74 (87)
71 PF02388 FemAB: FemAB family; 30.1 2.8E+02 0.006 27.7 8.4 70 170-240 231-301 (406)
72 PRK14157 heat shock protein Gr 30.1 1.8E+02 0.004 27.6 6.7 40 191-230 81-120 (227)
73 PF05852 DUF848: Gammaherpesvi 29.6 2.2E+02 0.0049 25.4 6.8 39 187-225 61-99 (146)
74 PF03791 KNOX2: KNOX2 domain ; 29.3 2.3E+02 0.005 21.2 5.8 27 201-227 9-35 (52)
75 PF01920 Prefoldin_2: Prefoldi 29.1 2.7E+02 0.0059 21.5 7.2 62 148-217 37-99 (106)
76 PF07888 CALCOCO1: Calcium bin 28.7 3E+02 0.0065 29.4 8.7 50 191-240 161-217 (546)
77 PHA02562 46 endonuclease subun 28.4 3.4E+02 0.0073 27.3 8.7 19 193-211 298-316 (562)
78 PF10368 YkyA: Putative cell-w 27.9 2.3E+02 0.005 26.0 6.9 45 202-246 90-135 (204)
79 PF12777 MT: Microtubule-bindi 27.7 3.5E+02 0.0075 26.3 8.4 37 187-223 228-264 (344)
80 PRK13452 atpC F0F1 ATP synthas 27.1 3.1E+02 0.0068 23.8 7.3 37 189-225 92-131 (145)
81 TIGR02616 tnaC_leader tryptoph 27.0 34 0.00073 22.5 0.9 17 285-301 6-22 (26)
82 PF08654 DASH_Dad2: DASH compl 26.9 2.3E+02 0.005 23.6 6.1 54 192-245 2-61 (103)
83 cd07671 F-BAR_PSTPIP1 The F-BA 26.8 4.5E+02 0.0097 24.6 8.7 49 187-235 153-201 (242)
84 PF10146 zf-C4H2: Zinc finger- 26.7 3.6E+02 0.0079 25.4 8.1 51 187-237 53-103 (230)
85 PRK04778 septation ring format 26.7 2E+02 0.0044 29.9 7.0 56 187-242 348-403 (569)
86 PF14523 Syntaxin_2: Syntaxin- 26.5 3.1E+02 0.0067 21.3 6.7 33 197-229 67-99 (102)
87 KOG1850 Myosin-like coiled-coi 26.4 2.9E+02 0.0062 28.2 7.6 58 187-245 116-173 (391)
88 PF11594 Med28: Mediator compl 26.1 2.6E+02 0.0056 23.9 6.3 47 187-238 15-61 (106)
89 PRK09039 hypothetical protein; 25.9 4.7E+02 0.01 25.8 9.0 54 187-240 137-190 (343)
90 PRK10884 SH3 domain-containing 25.8 2.5E+02 0.0055 25.9 6.8 46 200-245 92-137 (206)
91 PF05377 FlaC_arch: Flagella a 25.7 1.9E+02 0.0042 21.9 4.9 37 188-224 8-44 (55)
92 PRK14161 heat shock protein Gr 25.7 3.6E+02 0.0079 24.4 7.6 41 190-230 22-62 (178)
93 COG1579 Zn-ribbon protein, pos 25.5 3.7E+02 0.008 25.7 7.9 52 187-241 117-168 (239)
94 KOG0964 Structural maintenance 25.5 2.5E+02 0.0053 32.5 7.6 51 186-236 327-377 (1200)
95 COG1579 Zn-ribbon protein, pos 25.3 2.7E+02 0.0059 26.6 7.0 43 187-229 10-52 (239)
96 PF08939 DUF1917: Domain of un 25.3 45 0.00098 31.7 1.9 18 152-169 192-209 (243)
97 PF09866 DUF2093: Uncharacteri 24.9 43 0.00093 24.3 1.3 10 152-161 2-11 (42)
98 PF08641 Mis14: Kinetochore pr 24.9 4.4E+02 0.0095 22.5 8.2 47 175-221 27-75 (139)
99 KOG4405 GDP dissociation inhib 24.7 43 0.00094 35.1 1.7 27 161-202 42-68 (547)
100 PF13863 DUF4200: Domain of un 24.4 3.8E+02 0.0083 21.7 8.5 20 189-208 9-28 (126)
101 TIGR02169 SMC_prok_A chromosom 24.2 1.9E+02 0.0041 31.4 6.5 32 207-238 985-1016(1164)
102 COG5200 LUC7 U1 snRNP componen 24.0 5E+02 0.011 25.1 8.4 77 169-247 94-172 (258)
103 PF09554 RE_HaeII: HaeII restr 23.8 32 0.0007 34.0 0.6 60 2-66 159-221 (338)
104 PF04111 APG6: Autophagy prote 23.6 5.6E+02 0.012 25.0 9.0 41 187-227 43-83 (314)
105 cd07657 F-BAR_Fes_Fer The F-BA 23.5 5.1E+02 0.011 24.2 8.4 37 189-225 114-150 (237)
106 cd07680 F-BAR_PACSIN1 The F-BA 23.5 4.9E+02 0.011 24.9 8.4 50 186-235 167-216 (258)
107 KOG1962 B-cell receptor-associ 23.5 2.9E+02 0.0063 26.2 6.8 45 183-227 154-198 (216)
108 PF05278 PEARLI-4: Arabidopsis 23.2 5.5E+02 0.012 25.1 8.8 60 187-246 193-252 (269)
109 PF10481 CENP-F_N: Cenp-F N-te 23.0 3.6E+02 0.0078 26.8 7.5 62 184-245 15-90 (307)
110 PF12777 MT: Microtubule-bindi 23.0 4.3E+02 0.0092 25.7 8.1 45 184-228 5-49 (344)
111 PF04151 PPC: Bacterial pre-pe 22.7 58 0.0012 23.9 1.7 17 147-163 54-70 (70)
112 PF03607 DCX: Doublecortin; I 22.6 67 0.0015 23.7 2.0 28 140-168 33-60 (60)
113 PF09728 Taxilin: Myosin-like 22.1 3.5E+02 0.0075 26.4 7.2 53 187-239 114-166 (309)
114 PF03792 PBC: PBC domain; Int 21.8 2.4E+02 0.0052 26.3 5.8 38 197-237 107-144 (191)
115 PRK00409 recombination and DNA 21.7 5.5E+02 0.012 28.2 9.3 34 194-227 530-563 (782)
116 TIGR01069 mutS2 MutS2 family p 21.5 5.6E+02 0.012 28.2 9.3 32 194-225 525-556 (771)
117 PF06148 COG2: COG (conserved 21.5 1.4E+02 0.0031 24.9 4.0 49 187-242 62-110 (133)
118 PRK14163 heat shock protein Gr 21.5 5.2E+02 0.011 24.3 8.0 42 189-230 42-83 (214)
119 PF11559 ADIP: Afadin- and alp 21.2 5.1E+02 0.011 21.9 8.9 48 187-234 73-120 (151)
120 PF13851 GAS: Growth-arrest sp 21.0 6.4E+02 0.014 23.0 9.3 18 229-246 114-131 (201)
121 PF05717 TnpB_IS66: IS66 Orf2 21.0 96 0.0021 25.8 2.8 30 61-93 31-60 (107)
122 PF12325 TMF_TATA_bd: TATA ele 20.7 4.7E+02 0.01 22.4 7.0 40 195-234 62-101 (120)
123 PRK12765 flagellar capping pro 20.7 4.3E+02 0.0094 28.1 8.1 51 187-237 539-589 (595)
124 PF02996 Prefoldin: Prefoldin 20.6 4.4E+02 0.0096 21.0 6.9 18 151-168 54-71 (120)
125 KOG2002 TPR-containing nuclear 20.5 1E+03 0.022 27.6 11.0 19 222-240 858-876 (1018)
126 cd07664 BAR_SNX2 The Bin/Amphi 20.5 5.4E+02 0.012 24.2 7.9 44 187-230 133-188 (234)
127 PF00038 Filament: Intermediat 20.1 7.1E+02 0.015 23.2 8.7 47 201-247 244-290 (312)
128 PF05086 Dicty_REP: Dictyostel 20.0 4E+02 0.0087 30.0 7.8 69 170-245 812-885 (911)
No 1
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-36 Score=285.26 Aligned_cols=225 Identities=27% Similarity=0.297 Sum_probs=210.1
Q ss_pred ChhhhhhccCCcccccccHHHHHHHHcCCceeEeecCccceeeeeecceeeEEEEEeCHHhhccceEEEEEeCCCCceEE
Q 022098 1 MFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKL 80 (302)
Q Consensus 1 vfgALFskLGVPI~T~Is~kVLeeA~nG~v~v~~L~~G~~~~~kVeKQ~AhFy~v~itee~~~~GvVi~c~S~~~sKFKL 80 (302)
+|+|+|+++|| +|+++++++| ++.|..|+..|++|++|||.++++++.+.+||++.|+++.+++||+
T Consensus 102 ~f~~~f~dfg~----~~~g~~~~e~---------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~ 168 (336)
T KOG0713|consen 102 IFSAFFGDFGV----TVGGNPLEEA---------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRL 168 (336)
T ss_pred hHHHhhccccc----ccCCCcccCC---------CCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChh
Confidence 68999999999 8999999999 8899999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCcceEEEeeeccccCcceeeeeeeecceeeecccccchhhhcCCCChhhhhcccCccccceeeccCCceEEE
Q 022098 81 LYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFA 160 (302)
Q Consensus 81 l~FD~e~~Gg~~l~lQEdS~K~~k~T~A~myFlpf~vy~l~~~~n~~~~~kd~~~a~F~~Ld~fq~~e~~~L~pG~Hlf~ 160 (302)
++|+++++||+...|||..-++++. ..+....++...+|++|+.++++++..++.+.|++|
T Consensus 169 ~~~~~~~~~g~~~~~q~~~~~~~~~-------------------~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 229 (336)
T KOG0713|consen 169 EMFTQQEGPGRFQMLQEAVCDECPN-------------------VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDG 229 (336)
T ss_pred hheeeccCCChhhhhhhhhhccCCc-------------------cceeecCCceeeeeeecccCCceeeeeccCCcceec
Confidence 9999999988888899876666655 333456888889999999999999999999999999
Q ss_pred EecCcccccceEEEEEEEcCCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 161 VYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 161 VYGDNwf~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
|||||||+.+.|++..++..+.+.+.+.+.++|++|+.++.||..|+.||++|++++.++..++..+.++++.+|+.|+.
T Consensus 230 ~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~ 309 (336)
T KOG0713|consen 230 VPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNE 309 (336)
T ss_pred ccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCCCcCCC
Q 022098 241 IHASYTTAPPMKRSTSK 257 (302)
Q Consensus 241 iy~s~~~~~~~~~~~~~ 257 (302)
+++.|++.++....++.
T Consensus 310 ~~~~~~t~~~~~~~~~~ 326 (336)
T KOG0713|consen 310 KGNLYVTFDVEFPKSSL 326 (336)
T ss_pred hcceeEEecccCccccc
Confidence 99999999877654333
No 2
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.11 E-value=1.5 Score=41.08 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=24.0
Q ss_pred ceeeccCCceEEEEec--CcccccceEEEEE
Q 022098 148 EITELKAGTHVFAVYG--DNFFKSASYMIEA 176 (302)
Q Consensus 148 e~~~L~pG~Hlf~VYG--DNwf~~~~ytie~ 176 (302)
+-+.+.||+|-||+|- ++||.+++-.+.+
T Consensus 93 tFta~~~GeH~IC~~s~s~awf~~aklRvhl 123 (215)
T KOG1690|consen 93 TFTALTPGEHRICIQSNSTAWFNGAKLRVHL 123 (215)
T ss_pred EEEccCCCceEEEEecccchhhccceEEEEE
Confidence 4478889999999983 5999999877666
No 3
>COG1422 Predicted membrane protein [Function unknown]
Probab=84.08 E-value=2.3 Score=39.54 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Q 022098 194 AEILSKRAELSKFESEYREVLA-QFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 194 ~~l~~KK~EL~~Fe~EY~eak~-kf~ev~~r~~~e~~~i~~ 233 (302)
+.|.+.+++++.||.||+||++ ..+++++|++++..++-+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~ 112 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMD 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3577889999999999999987 588899999988777643
No 4
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.35 E-value=1.2e+02 Score=30.37 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHH-------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYRE-------------VLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 248 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~e-------------ak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~ 248 (302)
++++.++.++...+++|.+++..... .++.+..+...+.+..+++.+|..+..++.+++...
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777777777766533 335677777777777788888888777777776655
No 5
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=63.55 E-value=31 Score=32.48 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 245 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~ 245 (302)
++.....+.+...++|+++-++++-.|..+.+++....+.-..|.|-||..=+...++.
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 44566666777777777777777777777777777777777788888886644444443
No 6
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=62.95 E-value=38 Score=31.82 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQR 238 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~R 238 (302)
..|..+..++...=.+|.....+=++|++.|+.++.+-.+-.-++++||...
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566666777777777777777788888899999999998889999999763
No 7
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=60.80 E-value=60 Score=29.56 Aligned_cols=56 Identities=13% Similarity=0.257 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 242 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy 242 (302)
.++.+.+..+.....+++..+.+|..+...+.....+|.+++..+-+.+-.=|+-.
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~R 205 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEER 205 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999988766665444433
No 8
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=58.42 E-value=20 Score=26.87 Aligned_cols=46 Identities=26% Similarity=0.250 Sum_probs=33.8
Q ss_pred ceEEEEecCcccccceEEEEEEEcCCChhhhhhHHHHHHHHHHHHHHHH
Q 022098 156 THVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELS 204 (302)
Q Consensus 156 ~Hlf~VYGDNwf~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~ 204 (302)
-|+-+.||| ..|+|.|.-+......-...+++.|++=+..-+++|.
T Consensus 17 pHvHv~~g~---~~a~i~l~~l~~~~G~l~~k~l~~i~~~i~~~~~~l~ 62 (66)
T PF13711_consen 17 PHVHVRYGG---FEAKIWLEPLEVNEGFLPRKELRKILEWIEENQEELL 62 (66)
T ss_pred CeEEEEcCC---cEEEEEecchHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 399999999 7888888875553333334678888888888777775
No 9
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=58.09 E-value=8.9 Score=39.11 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=48.5
Q ss_pred CcceEEEeeeccccCcceeeeeeeecceeeecccccchhhhcCCCChhhhhcccCccccceeeccCCceEEEEecCcccc
Q 022098 89 GGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQPCEITELKAGTHVFAVYGDNFFK 168 (302)
Q Consensus 89 Gg~~l~lQEdS~K~~k~T~A~myFlpf~vy~l~~~~n~~~~~kd~~~a~F~~Ld~fq~~e~~~L~pG~Hlf~VYGDNwf~ 168 (302)
||=-.+++-+++|. .|-++.=|--.-|.|=..|+-..+-+.+.|- ..-..-|+||+-+=|.||+|||-
T Consensus 175 g~nDFSvmyStRk~----caqLwLGPaafINHDCrpnCkFvs~g~~tac--------vkvlRDIePGeEITcFYgs~fFG 242 (453)
T KOG2589|consen 175 GGNDFSVMYSTRKR----CAQLWLGPAAFINHDCRPNCKFVSTGRDTAC--------VKVLRDIEPGEEITCFYGSGFFG 242 (453)
T ss_pred cCCceeeeeecccc----hhhheeccHHhhcCCCCCCceeecCCCceee--------eehhhcCCCCceeEEeecccccC
Confidence 44345556665554 2444444433334444446655444555552 22346789999999999999999
Q ss_pred cceEEEEEEEc
Q 022098 169 SASYMIEALCA 179 (302)
Q Consensus 169 ~~~ytie~l~~ 179 (302)
.-|-.-+|..-
T Consensus 243 ~~N~~CeC~TC 253 (453)
T KOG2589|consen 243 ENNEECECVTC 253 (453)
T ss_pred CCCceeEEeec
Confidence 88876666543
No 10
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=56.29 E-value=5.7 Score=25.25 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=11.1
Q ss_pred CceeeecccccccCC
Q 022098 287 KKWFNIHLKADKRNK 301 (302)
Q Consensus 287 ~kw~~~~~~~~~~~~ 301 (302)
.|||||.-|.-+.+|
T Consensus 10 skwfnidnkivdhrp 24 (24)
T PF08053_consen 10 SKWFNIDNKIVDHRP 24 (24)
T ss_pred eeeEeccCeecccCC
Confidence 589999887665544
No 11
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.39 E-value=74 Score=26.19 Aligned_cols=52 Identities=21% Similarity=0.386 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSK--RAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQR 238 (302)
Q Consensus 187 ~~I~~vE~~l~~K--K~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~R 238 (302)
..++.+|.++... +.++.+++-+..++.....++-.++..-..-++-||..+
T Consensus 49 ~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~~ 102 (106)
T PF10805_consen 49 RRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLENE 102 (106)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999 999999999999999999999999998877777777654
No 12
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.07 E-value=81 Score=29.93 Aligned_cols=45 Identities=27% Similarity=0.475 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..++++|...+.++..++..|+-+++-|+-.-.|..++...+
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~ 111 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDL 111 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999887663
No 13
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.80 E-value=52 Score=23.64 Aligned_cols=37 Identities=16% Similarity=0.392 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022098 205 KFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 241 (302)
Q Consensus 205 ~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~i 241 (302)
+.|.+|.-.++.|+...+.|.....+.+.|.++-..+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998888888887766544
No 14
>PRK09806 tryptophanase leader peptide; Provisional
Probab=53.59 E-value=6.8 Score=25.30 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=11.7
Q ss_pred CceeeecccccccCC
Q 022098 287 KKWFNIHLKADKRNK 301 (302)
Q Consensus 287 ~kw~~~~~~~~~~~~ 301 (302)
.|||||.-|.-+.+|
T Consensus 10 skwfnidnkivdhrp 24 (26)
T PRK09806 10 SKWFNIDNKIVDHRP 24 (26)
T ss_pred eeEEeccCeeeccCC
Confidence 589999888766655
No 15
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=52.56 E-value=82 Score=29.41 Aligned_cols=52 Identities=15% Similarity=0.415 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
..+|.+++.++.....++.+-+.+|..+.....+...+|.++|..+=+.+-.
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~ 218 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQE 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999998887655543
No 16
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=51.72 E-value=98 Score=29.38 Aligned_cols=96 Identities=15% Similarity=0.236 Sum_probs=68.2
Q ss_pred ceeeccCCceEEEEecCcccccceEEEEEE-------EcCCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 022098 148 EITELKAGTHVFAVYGDNFFKSASYMIEAL-------CAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEM 220 (302)
Q Consensus 148 e~~~L~pG~Hlf~VYGDNwf~~~~ytie~l-------~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev 220 (302)
-.--|.-+.||+-.|+-|+|..-.|-++.= +++.-....+.|-+.=+.++.+.+++..+....++..+++.++
T Consensus 72 KYY~Is~~~rleV~lsp~~f~~~~~~~~~~~l~~~r~~~~~~~~s~~~~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el 151 (217)
T COG1777 72 KYYMISRNLRLEVTLSPNFFGAERFDLEEDDLESERSEVSKLFKSPEGISELISRLLEINREIEELSRAQTELQKQLNEL 151 (217)
T ss_pred ceeeccCCeEEEEEecCcccceeccCccccchhhhhcchhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677889999999999998877776652 1111112224466666778888888889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhh
Q 022098 221 TSRYAQEMQAIDELLKQRNEIHA 243 (302)
Q Consensus 221 ~~r~~~e~~~i~~LL~~Re~iy~ 243 (302)
..|.+.+-.+.+....+|.-.+.
T Consensus 152 ~~rik~~ied~~~~~~~~~vl~~ 174 (217)
T COG1777 152 MDRIKEEIEDKDGDMTERIVLEY 174 (217)
T ss_pred HHHHHHHHhcccchHHHHHHHHH
Confidence 99988776666665555544443
No 17
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=51.15 E-value=5 Score=33.22 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccCCceEEEEecCccc----ccceEEEEEEEcC-C--ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 022098 152 LKAGTHVFAVYGDNFF----KSASYMIEALCAA-P--FTEEKENLRAVEAEILSKRAELSKFESEYREVLA 215 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf----~~~~ytie~l~~~-~--~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~ 215 (302)
-++|+|-||+.+..+- +.+++.|..-... + .....+.+..+|.+|......|+..+.+....+.
T Consensus 70 ~~~G~y~iCf~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~ 140 (183)
T PF01105_consen 70 KESGEYQICFDNSSSSFSPSKRVSFDIDVGNENKDYKNVAKKEHLDPLEESLEKLESNLKEIKDEQKYLRE 140 (183)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccCCCEEEEEEcCCCCccccEEEEEEEEEeecccchhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999876 3444444442211 1 1222366777777777777777666666554333
No 18
>PRK14154 heat shock protein GrpE; Provisional
Probab=50.96 E-value=83 Score=29.41 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
-.+..++++|...++++..++..|.-+++-|+-.-.|..++.+.+
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888899999999999999888888877663
No 19
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=50.81 E-value=33 Score=29.25 Aligned_cols=61 Identities=16% Similarity=0.348 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHhhhhcc
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA---------IDELLKQRNEIHASYTT 247 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~---------i~~LL~~Re~iy~s~~~ 247 (302)
.++..++.+|....+++.+++..|..+.+.++.+..|+..+.+. +.+||.-.+.+...+-.
T Consensus 11 ~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 11 EEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666666777766677777666666655443 44566666555544444
No 20
>PRK14139 heat shock protein GrpE; Provisional
Probab=50.48 E-value=96 Score=28.40 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..++++|...++++..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~ 76 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKA 76 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888999999999999999999999999999887664
No 21
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.51 E-value=1.4e+02 Score=25.74 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s 244 (302)
+..+..|.+|..-.+-|..++.|+....+.++.....+.+....+..+-++|++--..
T Consensus 27 ~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 27 DRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788999999999999999999999999999999999999989998888887554433
No 22
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=48.39 E-value=14 Score=28.05 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=20.5
Q ss_pred cccCccccceeeccCCceEEEE
Q 022098 140 KLDGFQPCEITELKAGTHVFAV 161 (302)
Q Consensus 140 ~Ld~fq~~e~~~L~pG~Hlf~V 161 (302)
=|.||+..+-..|+.|++||++
T Consensus 33 I~NGF~~~~d~~L~e~D~v~~I 54 (57)
T PF14453_consen 33 ILNGFPTKEDIELKEGDEVFLI 54 (57)
T ss_pred EEcCcccCCccccCCCCEEEEE
Confidence 6899999999999999999986
No 23
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.22 E-value=1.1e+02 Score=30.53 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCC
Q 022098 185 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAP 249 (302)
Q Consensus 185 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~~ 249 (302)
..++|..=|..|-+ .|...-.||+.++.+..++..+|.+-...|.++..+=.+|-.++-.+.
T Consensus 253 ~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK 314 (359)
T PF10498_consen 253 TLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVK 314 (359)
T ss_pred HHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544 556666789999999999999998888888887777677766665554
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.71 E-value=1.2e+02 Score=29.29 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 239 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re 239 (302)
++|...+.+|..+|.++...+.+-.+...+.++..++-.+...+|.++=+.|+
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888899999999988888888888888877777777776655554
No 25
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.31 E-value=1.5e+02 Score=24.93 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
+.+...+.++...|.+|..-...+++|..+|+.=+.++..- +..|=..|++
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~---~~~L~~lr~e 67 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAED---IKELQQLREE 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHH
Confidence 56788889999999999999999999999999877777744 4444444443
No 26
>PRK14162 heat shock protein GrpE; Provisional
Probab=45.85 E-value=1.2e+02 Score=27.90 Aligned_cols=45 Identities=27% Similarity=0.432 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
+.+..++.+|...+.++..++..|.-+++-|+-.-.|+.++.+.+
T Consensus 39 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~ 83 (194)
T PRK14162 39 NPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQL 83 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888899999999999999999999999999999999887653
No 27
>PRK14148 heat shock protein GrpE; Provisional
Probab=45.67 E-value=1.3e+02 Score=27.79 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..++.+|...++++..++..|.-+++-|+-...|..++...+
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~ 84 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNA 84 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788889999999999999999999999999999999886654
No 28
>PRK14158 heat shock protein GrpE; Provisional
Probab=45.54 E-value=1.5e+02 Score=27.44 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 232 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~ 232 (302)
+.+..+|.+|...+.|+..++..|.-+++-|+-.-.|..+|.+.+.
T Consensus 40 ~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 40 DRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688999999999999999999999999999999999998877643
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=45.39 E-value=1.2e+02 Score=29.62 Aligned_cols=53 Identities=25% Similarity=0.357 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 239 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re 239 (302)
++|.++..+|..+|+++..++.+-.+...+-++.+++-.+-..+|.++=+.++
T Consensus 211 ~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 211 EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999988888888877777777766654443
No 30
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=43.05 E-value=1.7e+02 Score=26.84 Aligned_cols=54 Identities=7% Similarity=0.209 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
.++.+++.++...+.++.+-+.+|..+...+..+..+|.+++..+=+.+-.=|+
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe 206 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEE 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999999999999998887766644333
No 31
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=42.70 E-value=1.4e+02 Score=28.99 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 022098 195 EILSKRAELSKFE--SEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 247 (302)
Q Consensus 195 ~l~~KK~EL~~Fe--~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~ 247 (302)
.-...|.=|..++ ++|++.+..|++.-.++.+...+-.+|+++-++.-..|-.
T Consensus 113 ~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 113 KNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777 7888888888888888888877878888777766666543
No 32
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=42.45 E-value=67 Score=31.73 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022098 196 ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 196 l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
-...|..|.+...+|..-+++|+++++.|+ +.|..||.+
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneft---thV~nlL~e 140 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFT---THVMNLLRE 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 456888899999999999999999999998 668888865
No 33
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=42.20 E-value=74 Score=26.57 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 248 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~ 248 (302)
+++|-.-|..-..+-+-|.+++.-|......|.++|+-++.-+.+-++|+..-+.++......
T Consensus 11 LnkL~npEl~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 11 LNKLGNPELTESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 367777787778888899999999999999999999999988899999999999998665544
No 34
>PHA03161 hypothetical protein; Provisional
Probab=41.87 E-value=97 Score=27.87 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~ 233 (302)
..|..++..|..|++|+..+..-=+......++.+.|..+.++++..
T Consensus 61 ~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~ 107 (150)
T PHA03161 61 GMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHF 107 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999999886676777777777776655444443
No 35
>PRK14140 heat shock protein GrpE; Provisional
Probab=41.39 E-value=1.7e+02 Score=27.00 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
+.|.+.+++|...++|+..++..|.-+++-|+-.-.|...+.+.+
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~ 81 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAA 81 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888889999999999999999999999999988887653
No 36
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.39 E-value=1.4e+02 Score=29.07 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 022098 189 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEM 228 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~ 228 (302)
|...+.+|....+||.+-|.|+.+++.+.+++.+|+.+-.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555556666666667777777777777666543
No 37
>PHA00489 scaffolding protein
Probab=40.38 E-value=82 Score=26.48 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~ 243 (302)
+++|-+-|..-..+-+-|.+++.-|......|.++|.-++.-+.+-++|+..-.+++.
T Consensus 12 LnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFr 69 (101)
T PHA00489 12 LNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFR 69 (101)
T ss_pred HHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 3777777888888888899999999999999999999888888888999988888873
No 38
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.22 E-value=1.4e+02 Score=25.45 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEY 210 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY 210 (302)
..|+..|.++..-|.|+..++.+-
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r 46 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAER 46 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666665555443
No 39
>PRK11637 AmiB activator; Provisional
Probab=40.21 E-value=1.6e+02 Score=29.21 Aligned_cols=28 Identities=14% Similarity=0.400 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVL 214 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak 214 (302)
++|++++.+|.....+|.+.+.+=.++.
T Consensus 47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~ 74 (428)
T PRK11637 47 DQLKSIQQDIAAKEKSVRQQQQQRASLL 74 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444444433333
No 40
>PRK14145 heat shock protein GrpE; Provisional
Probab=39.87 E-value=1.9e+02 Score=26.87 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..++++|...++++..++.-|.-+++-|+-.-.|...+.+.+
T Consensus 45 ~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 45 DEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888999999999999999999999999999999887663
No 41
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=38.76 E-value=1.2e+02 Score=29.11 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 234 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~L 234 (302)
.++++++.+.+..-+.++.+-+.+|+++...-...+.+|.++|..+=+.
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~ 215 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEI 215 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999988775443
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=38.62 E-value=1.9e+02 Score=29.03 Aligned_cols=71 Identities=14% Similarity=0.367 Sum_probs=36.8
Q ss_pred EEcCCChhhhhhHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 022098 177 LCAAPFTEEKENLRAVEAEILSKRAELSKFES----------EYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 177 l~~~~~~~~~~~I~~vE~~l~~KK~EL~~Fe~----------EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
+|..++++....+..++.++...+.++..++. +|.++..+..+.-.++.+.+..+..+...+..+-.+..
T Consensus 289 ~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~ 368 (562)
T PHA02562 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE 368 (562)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666544444455555555555555554444 44444444444444455555555555555555555444
Q ss_pred c
Q 022098 247 T 247 (302)
Q Consensus 247 ~ 247 (302)
.
T Consensus 369 ~ 369 (562)
T PHA02562 369 E 369 (562)
T ss_pred H
Confidence 3
No 43
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.44 E-value=2.7e+02 Score=26.31 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYR 211 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~ 211 (302)
+.+...|.-|...++||+.+..|++
T Consensus 25 ~~~e~ee~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 25 ESLENEEKCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 44
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=38.30 E-value=1.3e+02 Score=34.52 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 022098 188 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~ 243 (302)
+|.++|.++..+=+++.+++..-.+.+.+-++.-+.+...+++.++|+..|.+++-
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666666677777777777666553
No 45
>PRK14155 heat shock protein GrpE; Provisional
Probab=37.49 E-value=1.1e+02 Score=28.59 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 188 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
.....+.+|...++|+..++..|.-+++-|+-.-.|..+|.+.
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~ 56 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMND 56 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777888888888888988999999888888887665
No 46
>PRK14147 heat shock protein GrpE; Provisional
Probab=37.43 E-value=1.5e+02 Score=26.60 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
......+.+|...++|+..++..|+-+.+-|+-.-.|..++.+.+
T Consensus 18 ~~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~ 62 (172)
T PRK14147 18 PETDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQA 62 (172)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456778888888899999999999999999999888876653
No 47
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=36.47 E-value=2.4e+02 Score=25.68 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 239 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re 239 (302)
-+|..+-.+|..-..--.+=+.||.+|+..|.|....=.+.....-+|+.+=+
T Consensus 91 kkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 91 KKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777788999999999999987776666666666665433
No 48
>PRK14160 heat shock protein GrpE; Provisional
Probab=36.23 E-value=2.2e+02 Score=26.68 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..+++++...++++..++..|+-+++-|+-.-.|..++.+.+
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888889989999999888888876653
No 49
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=36.18 E-value=1.8e+02 Score=27.24 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~ 233 (302)
..+++++++.+..-+.++.+-+.+|..+...+.++..+|.+++...-+
T Consensus 153 ~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~ 200 (240)
T cd07672 153 VKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACE 200 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366889999999999999999999999999999999999998765433
No 50
>PRK09039 hypothetical protein; Validated
Probab=35.95 E-value=2.7e+02 Score=27.36 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHhhh---hccCCCCCC
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA-IDELLKQRNEIHAS---YTTAPPMKR 253 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~-i~~LL~~Re~iy~s---~~~~~~~~~ 253 (302)
.+|..+++||...-.+|...|....++..+.++.-.++..-... +.+|-.-|.+++.. ++..++..+
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~ir 214 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIR 214 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcE
Confidence 33444555555555555555555555555555555555554433 55555667777633 344444443
No 51
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=35.38 E-value=2.6e+02 Score=24.97 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 236 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~ 236 (302)
++|...+..|..|.+-+..++-||....-.|.-+-.|+.....+=++|+.
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777777777777777777666666666554
No 52
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.92 E-value=3.2e+02 Score=26.61 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 222 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 222 (302)
++|+.+|.+......||..++.|..++.+.=.+...
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666554444333333
No 53
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=34.73 E-value=2.1e+02 Score=27.39 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREV----LAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 248 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~ea----k~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~ 248 (302)
-+++...+....|-..|-.|+.+++.- ...|+.|..++..+..+++.+.+.|+.....++.+
T Consensus 173 ~~~k~~~~~~~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~ 238 (267)
T PF09903_consen 173 AKYKKEQENKKEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSS 238 (267)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666667777888887654 46788999999999999999999999999998844
No 54
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=34.60 E-value=2.2e+02 Score=22.11 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 242 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy 242 (302)
..++++++.+..-.+++.....|-.+....-.+++++.....+.++.+...=.++=
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g 81 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLG 81 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55888888899999999999999999999999999999999998888877655443
No 55
>smart00721 BAR BAR domain.
Probab=34.06 E-value=1e+02 Score=27.03 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=28.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 202 ELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 202 EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
+|.+.+.|+..|+..|+++...+..+ +-.++..|..
T Consensus 171 kl~~~e~el~~ak~~fe~~~~~l~~~---l~~l~~~~~~ 206 (239)
T smart00721 171 KLAKAEEELRKAKQEFEESNAQLVEE---LPQLVASRVD 206 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHH
Confidence 45558899999999999999888865 5556666665
No 56
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.99 E-value=2.8e+02 Score=26.98 Aligned_cols=58 Identities=16% Similarity=0.323 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHhhh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS---RYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~---r~~~e~~~i~~LL~~Re~iy~s 244 (302)
.+.+.++.+|...=+++......-.+.+++.++.-. +|+++-.++.+-|.+|++++..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666655 4444545555668888888765
No 57
>PRK14144 heat shock protein GrpE; Provisional
Probab=33.91 E-value=1.8e+02 Score=27.01 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..+..+++.|...+.|+..++..|.-+++-|+-.-.|...|.+..
T Consensus 45 ~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~ 89 (199)
T PRK14144 45 PSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANA 89 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888999999999999999999988876653
No 58
>PRK14151 heat shock protein GrpE; Provisional
Probab=33.61 E-value=2.2e+02 Score=25.78 Aligned_cols=45 Identities=11% Similarity=0.145 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
.....++++|...++|+..++..|.-+.+-|+-.-.|..+|.+..
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777888888888888888888888888888776553
No 59
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=33.39 E-value=3.1e+02 Score=25.85 Aligned_cols=62 Identities=16% Similarity=0.385 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccC
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 248 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~ 248 (302)
.++.+..+++...+..+..++.-...+++.|.+..+.+.+.+..+-..+..+-+.....+..
T Consensus 244 ~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~Ia~~ 305 (306)
T PF04888_consen 244 KEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSGDTQAQIASS 305 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56888888888899999999999999999999999999999999999999888877766654
No 60
>PRK14141 heat shock protein GrpE; Provisional
Probab=33.31 E-value=1.9e+02 Score=26.95 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 191 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 191 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
..|.+|...++|+..++..|.-+++-|+-.-.|..+|.+.+
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~ 75 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADA 75 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777778888888888888888888776653
No 61
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=32.92 E-value=3.7e+02 Score=24.27 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 022098 196 ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 196 l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s 244 (302)
......++..+++|..+...+..++..++........+.+...++.|.+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ 170 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQE 170 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555555555555555543
No 62
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.75 E-value=3e+02 Score=28.97 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 222 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 222 (302)
+.|+++++++...++|+.+.+.|-++....+.....
T Consensus 215 ~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~ 250 (646)
T PRK05771 215 ELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777666555554433
No 63
>PRK14153 heat shock protein GrpE; Provisional
Probab=32.69 E-value=1.4e+02 Score=27.64 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
+++...+.+|...+.++..++..|.-+++-|+-.-.|..++.+.+
T Consensus 33 ~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~ 77 (194)
T PRK14153 33 PEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEEN 77 (194)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667778888888888999999999999999888888776653
No 64
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=31.92 E-value=2.9e+02 Score=27.07 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
-.++..-.|+++.+-.|++--.-+||.++..+|++.-..+.+..+++|.+++.++.-..+
T Consensus 16 L~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVt 75 (277)
T PF15030_consen 16 LRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVT 75 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccc
Confidence 568899999999999999999999999999999999999999999999999988764443
No 65
>PRK14146 heat shock protein GrpE; Provisional
Probab=31.59 E-value=2.5e+02 Score=26.26 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 231 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i 231 (302)
+.+...+++|...+.++..++..|+-+++-|+-.-.|..++...+
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~ 98 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSI 98 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667788888999999999999999999999999998876653
No 66
>PRK14156 heat shock protein GrpE; Provisional
Probab=31.41 E-value=2e+02 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 191 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 191 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
..+++|...++++..++..|+-+++-|+-.-.|..++...
T Consensus 31 ~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 31 PEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999998887665
No 67
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=31.40 E-value=2.3e+02 Score=30.72 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHhhhhccCCCC
Q 022098 188 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL---KQRNEIHASYTTAPPM 251 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL---~~Re~iy~s~~~~~~~ 251 (302)
.+...++.+..-+.+...+..|+-+.+........+++.......+-+ .+|.++|+.+.-..--
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344455555555666666667777777777666777777766677777 8899999988755433
No 68
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.24 E-value=2e+02 Score=21.87 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=2.4
Q ss_pred HHHHHH
Q 022098 230 AIDELL 235 (302)
Q Consensus 230 ~i~~LL 235 (302)
.|.+||
T Consensus 36 nvk~ll 41 (55)
T PF05377_consen 36 NVKDLL 41 (55)
T ss_pred HHHHHH
Confidence 334444
No 69
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.86 E-value=2.7e+02 Score=22.30 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=10.4
Q ss_pred ccCCceEEEEecCcccc
Q 022098 152 LKAGTHVFAVYGDNFFK 168 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf~ 168 (302)
|.+.++++---|.|||-
T Consensus 65 i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 65 VKDDDKVLVDLGTGVYV 81 (129)
T ss_pred ECCCCEEEEEecCCEEE
Confidence 34566666666766663
No 70
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=30.78 E-value=38 Score=27.31 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=18.2
Q ss_pred cCccccceeeccCCceEEE-EecCcc
Q 022098 142 DGFQPCEITELKAGTHVFA-VYGDNF 166 (302)
Q Consensus 142 d~fq~~e~~~L~pG~Hlf~-VYGDNw 166 (302)
+.=|......|.||+|.+. ++||+-
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~~d~~ 74 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQLGDGD 74 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEeCCCC
Confidence 4445556678999999998 567654
No 71
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=30.10 E-value=2.8e+02 Score=27.66 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=32.9
Q ss_pred ceEEEEEEEcCCChhhh-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 170 ASYMIEALCAAPFTEEK-ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 170 ~~ytie~l~~~~~~~~~-~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
+.+.|--+-....-+.. ++|.+.+++|....+.|.+-. -...-++..++-...+.++.+++.+|++....
T Consensus 231 a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 231 AKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp EEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred eEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444334333333333 445555555555444444333 22333444555555666666666676665543
No 72
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.09 E-value=1.8e+02 Score=27.59 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 191 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 191 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
.+|.+|...++|+..++..|.-+++.|+-.-.|..+|.+.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~ 120 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDR 120 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777777777777777777777766554
No 73
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=29.63 E-value=2.2e+02 Score=25.40 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
+.+..++..|..++.|+..+..-=+.-....++.+.+..
T Consensus 61 ~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~ 99 (146)
T PF05852_consen 61 NKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVE 99 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 567778888888888887766533333344444444443
No 74
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=29.29 E-value=2.3e+02 Score=21.24 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 022098 201 AELSKFESEYREVLAQFTEMTSRYAQE 227 (302)
Q Consensus 201 ~EL~~Fe~EY~eak~kf~ev~~r~~~e 227 (302)
-||++|=.-|-.++.+|.+-..|--+|
T Consensus 9 pELDqFMeaYc~~L~kykeeL~~p~~E 35 (52)
T PF03791_consen 9 PELDQFMEAYCDMLVKYKEELQRPFQE 35 (52)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999888877653
No 75
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.08 E-value=2.7e+02 Score=21.51 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=33.7
Q ss_pred ceeeccCCceEEEEecCcccccceEEEEEEEcCCChhhh-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 022098 148 EITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEK-ENLRAVEAEILSKRAELSKFESEYREVLAQF 217 (302)
Q Consensus 148 e~~~L~pG~Hlf~VYGDNwf~~~~ytie~l~~~~~~~~~-~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf 217 (302)
+...+.++..++.-.|+=|+.. +.+...... +.+..++..|...++++...+.++.+.++..
T Consensus 37 eL~~l~~~~~~y~~vG~~fv~~--------~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 37 ELEKLDDDRKVYKSVGKMFVKQ--------DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHTSSTT-EEEEEETTEEEEE--------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcchhHHHHhHHHHHh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888889876543 222222233 4455555555555555555555555544443
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=28.75 E-value=3e+02 Score=29.43 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 191 AVEAEILSKRAELSKFESEYRE-------VLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 191 ~vE~~l~~KK~EL~~Fe~EY~e-------ak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
.+|.+....+.++..++.+... ...++++++......+.+.+.|..++.+
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 3444444455555555555555555544
No 77
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.35 E-value=3.4e+02 Score=27.32 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 022098 193 EAEILSKRAELSKFESEYR 211 (302)
Q Consensus 193 E~~l~~KK~EL~~Fe~EY~ 211 (302)
+..+....+++..++.+..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~ 316 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLE 316 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433
No 78
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=27.85 E-value=2.3e+02 Score=25.99 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhhhc
Q 022098 202 ELSKFESEYREVLAQFTEMTS-RYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 202 EL~~Fe~EY~eak~kf~ev~~-r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
-|..-+.|+..|....+.+-. ....+-..+.+.|+.|..+|+.|.
T Consensus 90 ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~ 135 (204)
T PF10368_consen 90 AIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLY 135 (204)
T ss_dssp HHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433 255666778889999999988775
No 79
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.72 E-value=3.5e+02 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSR 223 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r 223 (302)
+++...+++|..++.+|...+....+....|++.+..
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e 264 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKE 264 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888888888888888888888777764
No 80
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=27.14 E-value=3.1e+02 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHH
Q 022098 189 LRAVEAEILSKRAELSKFE---SEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe---~EY~eak~kf~ev~~r~~ 225 (302)
+.++|..+..-++.|++.+ .++..|..+...+..|+.
T Consensus 92 ~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~ 131 (145)
T PRK13452 92 QAEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLK 131 (145)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665532 356667777777777766
No 81
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=26.96 E-value=34 Score=22.53 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=11.8
Q ss_pred cCCceeeecccccccCC
Q 022098 285 KKKKWFNIHLKADKRNK 301 (302)
Q Consensus 285 ~~~kw~~~~~~~~~~~~ 301 (302)
.-+|||||.-+.+.--|
T Consensus 6 ~~s~WfniD~rIsf~FP 22 (26)
T TIGR02616 6 VLSKWFNIDNRISFFFP 22 (26)
T ss_pred cCCceEEcchhheeccc
Confidence 35799999877665433
No 82
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=26.94 E-value=2.3e+02 Score=23.64 Aligned_cols=54 Identities=19% Similarity=0.366 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhHH--HHHHHHHH-HHHHHHHHH---HhHHHHHHHHHHHHHHhhhh
Q 022098 192 VEAEILSKRAELSKFES--EYREVLAQ-FTEMTSRYA---QEMQAIDELLKQRNEIHASY 245 (302)
Q Consensus 192 vE~~l~~KK~EL~~Fe~--EY~eak~k-f~ev~~r~~---~e~~~i~~LL~~Re~iy~s~ 245 (302)
++++|..||.||..++. .+...++. .+++-.++. .-++.|...|..=+.+..+.
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~I 61 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAI 61 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHH
Confidence 46889999999977653 22222222 222222332 23345555666555555443
No 83
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=26.77 E-value=4.5e+02 Score=24.63 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 235 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL 235 (302)
.++.+++.++...+.++.+=+.+|..+...+.++..+|.+++..+=+.+
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~ 201 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVF 201 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588899999999999999999999999999999999999887755443
No 84
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.74 E-value=3.6e+02 Score=25.41 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
+.|+.|...|...=+.+.+-+.|=.+.+..-.....-|...+.+||+++++
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554544445555666677788888766
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.67 E-value=2e+02 Score=29.93 Aligned_cols=56 Identities=14% Similarity=0.337 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 242 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy 242 (302)
+.++.++.+|....+++...+....+....|.++..++....+.++++-+.+.++.
T Consensus 348 ~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~ 403 (569)
T PRK04778 348 ESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLS 403 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444444433333333333444444433333334433333333
No 86
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=26.54 E-value=3.1e+02 Score=21.30 Aligned_cols=33 Identities=21% Similarity=0.508 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Q 022098 197 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQ 229 (302)
Q Consensus 197 ~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~ 229 (302)
...|-...++..+|..++..|..+..+|.+.+.
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677788888999999999988888876544
No 87
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=26.37 E-value=2.9e+02 Score=28.16 Aligned_cols=58 Identities=14% Similarity=0.355 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 245 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~ 245 (302)
..|.+|+++|..-|.++.++-.+--+.-.++.++..+|...++.||.+...-+ .+..|
T Consensus 116 vtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql 173 (391)
T KOG1850|consen 116 VTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQL 173 (391)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45889999999999999999888888899999999999999999988877665 55544
No 88
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=26.12 E-value=2.6e+02 Score=23.88 Aligned_cols=47 Identities=32% Similarity=0.444 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQR 238 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~R 238 (302)
+-+|+.|+=-+.||.+|+-.+.|+. -++=.+.|++|++.-++||..=
T Consensus 15 D~aRq~e~~FlqKr~~LS~~kpe~~-----lkEEi~eLK~ElqRKe~Ll~Kh 61 (106)
T PF11594_consen 15 DVARQMEAFFLQKRFELSAYKPEQV-----LKEEINELKEELQRKEQLLQKH 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999999998886 3344556677777777777443
No 89
>PRK09039 hypothetical protein; Validated
Probab=25.91 E-value=4.7e+02 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
..|..+-.||..-|..|...+.+-.++.++-.+.-.++......++.+|++|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~ 190 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQ 190 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888889999999999999999999999999999999999999999988643
No 90
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.80 E-value=2.5e+02 Score=25.93 Aligned_cols=46 Identities=9% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Q 022098 200 RAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 245 (302)
Q Consensus 200 K~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~ 245 (302)
|..|.++|.|..+++++..++...+.+...+..+-+.+++...+++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L 137 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGL 137 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
No 91
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.74 E-value=1.9e+02 Score=21.94 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 022098 188 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRY 224 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~ 224 (302)
++-+++..|.+-|+|+++...+--+...-...+..=|
T Consensus 8 ~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 8 ELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333333333
No 92
>PRK14161 heat shock protein GrpE; Provisional
Probab=25.71 E-value=3.6e+02 Score=24.44 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 190 RAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 190 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
...+++|...++++..++..|.-+++-|+-.-.|..++.+.
T Consensus 22 ~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~ 62 (178)
T PRK14161 22 ETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDE 62 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888888888888888888888888877665
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.52 E-value=3.7e+02 Score=25.74 Aligned_cols=52 Identities=27% Similarity=0.391 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 241 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~i 241 (302)
+.+...++++...+.+|.+.+....++.+..++.+..-.++ ...+..+|+++
T Consensus 117 ~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~---~~~~~~~~~~L 168 (239)
T COG1579 117 EEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE---GQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 56777778888888888888888888888888777766644 33444555443
No 94
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.52 E-value=2.5e+02 Score=32.47 Aligned_cols=51 Identities=29% Similarity=0.393 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 236 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~ 236 (302)
...++.++..|..++.||.+.++.|.+....=.-.-.|+....+.-.+||.
T Consensus 327 l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~ 377 (1200)
T KOG0964|consen 327 LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA 377 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999988877766666677766666666653
No 95
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=25.28 E-value=2.7e+02 Score=26.61 Aligned_cols=43 Identities=5% Similarity=0.078 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQ 229 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~ 229 (302)
-.|+.+..++.+.......++.+|..|++..+.+-.++..-..
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~ 52 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEI 52 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555555666665555555555554443333
No 96
>PF08939 DUF1917: Domain of unknown function (DUF1917); InterPro: IPR015034 This family includes various hypothetical proteins.; PDB: 1ZTP_B 2Q4K_C.
Probab=25.25 E-value=45 Score=31.68 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=12.2
Q ss_pred ccCCceEEEEecCccccc
Q 022098 152 LKAGTHVFAVYGDNFFKS 169 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf~~ 169 (302)
=..+.||||||-.||..-
T Consensus 192 ~~~~~~vIcVYT~Df~D~ 209 (243)
T PF08939_consen 192 DGDDRRVICVYTPDFRDR 209 (243)
T ss_dssp TTSS-EEEEEEES-TT-H
T ss_pred CCCCCEEEEEECCCCCCH
Confidence 347889999999998653
No 97
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=24.88 E-value=43 Score=24.28 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=8.4
Q ss_pred ccCCceEEEE
Q 022098 152 LKAGTHVFAV 161 (302)
Q Consensus 152 L~pG~Hlf~V 161 (302)
|+||+|+.|-
T Consensus 2 l~pG~~V~CA 11 (42)
T PF09866_consen 2 LSPGSFVRCA 11 (42)
T ss_pred ccCCCEEEEE
Confidence 6899999984
No 98
>PF08641 Mis14: Kinetochore protein Mis14 like; InterPro: IPR013950 Mis14 is a kinetochore protein which is known to be recruited to kinetochores independently of CENP-A [].
Probab=24.87 E-value=4.4e+02 Score=22.50 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=35.4
Q ss_pred EEEEcCCChhhh-hhHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHH
Q 022098 175 EALCAAPFTEEK-ENLRAVEAEILSKRAELSKFESEY-REVLAQFTEMT 221 (302)
Q Consensus 175 e~l~~~~~~~~~-~~I~~vE~~l~~KK~EL~~Fe~EY-~eak~kf~ev~ 221 (302)
+--.+.|++.++ ++|+.++.++...=.++.++.+.| +.+...|...+
T Consensus 27 ~~~~~EPfD~~L~~rv~~l~~~~e~~~v~va~lRr~~P~~i~~~~~~~~ 75 (139)
T PF08641_consen 27 EAEEYEPFDLELNERVRSLYDQLEDLTVEVAQLRRDYPRKIAEAYAKSL 75 (139)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344678999999 789999999998888888888888 44444554333
No 99
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.66 E-value=43 Score=35.08 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=18.7
Q ss_pred EecCcccccceEEEEEEEcCCChhhhhhHHHHHHHHHHHHHH
Q 022098 161 VYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAE 202 (302)
Q Consensus 161 VYGDNwf~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~E 202 (302)
-||+|| ++|++. .|.++|..-+.+|.+
T Consensus 42 yYGg~w---aSfSms------------~ihe~~e~~l~~~d~ 68 (547)
T KOG4405|consen 42 YYGGNW---ASFSMS------------MIHEVEEAALTKKDH 68 (547)
T ss_pred ccCCcc---cceeec------------hhhhhhHHHHhhhhc
Confidence 499999 788876 466666665555544
No 100
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.41 E-value=3.8e+02 Score=21.66 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 022098 189 LRAVEAEILSKRAELSKFES 208 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~ 208 (302)
+-.|+..|..||.|+.....
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~ 28 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREE 28 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 101
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=24.19 E-value=1.9e+02 Score=31.39 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022098 207 ESEYREVLAQFTEMTSRYAQEMQAIDELLKQR 238 (302)
Q Consensus 207 e~EY~eak~kf~ev~~r~~~e~~~i~~LL~~R 238 (302)
+.+|.....+++.+......-++.|..|=+.|
T Consensus 985 ~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~ 1016 (1164)
T TIGR02169 985 LKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444
No 102
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=24.04 E-value=5e+02 Score=25.13 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=49.6
Q ss_pred cceEEEEEEEcCC--ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 022098 169 SASYMIEALCAAP--FTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 169 ~~~ytie~l~~~~--~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
++|=.|.+--+.. ..++..+|+++|..+..-=.-+--.=.|. +|+++-+.|-.-..+- .+...|...|++||..+.
T Consensus 94 ~cn~~I~~a~~~~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~-dalakrk~V~~a~~~f-~el~rl~~~rkei~~~v~ 171 (258)
T COG5200 94 SCNDGIRAAGLEDRTTPEEFGKIKEKEELFNRVDESIGELGMEG-DALAKRKLVERACSAF-NELERLREERKEIKEAVY 171 (258)
T ss_pred HhcchhhhhhhhccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4555555533322 34455889999888877666665555554 4566655544433332 568889999999999987
Q ss_pred c
Q 022098 247 T 247 (302)
Q Consensus 247 ~ 247 (302)
+
T Consensus 172 s 172 (258)
T COG5200 172 S 172 (258)
T ss_pred H
Confidence 4
No 103
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=23.81 E-value=32 Score=34.03 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=36.0
Q ss_pred hhhhhhccCCcccccccHHH---HHHHHcCCceeEeecCccceeeeeecceeeEEEEEeCHHhhccce
Q 022098 2 FAALFSKLGVPIKTTVSATV---LEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGF 66 (302)
Q Consensus 2 fgALFskLGVPI~T~Is~kV---LeeA~nG~v~v~~L~~G~~~~~kVeKQ~AhFy~v~itee~~~~Gv 66 (302)
|-+|.+.|||.|.-+++-+- |.|--+-+-.+..|.... ---++.||||+|-||.. |+.|+
T Consensus 159 f~~li~~l~v~v~i~~~~~n~~Ll~Ef~dft~kil~l~~~~----~~~~~~Aki~RVGVTNA-ADRGL 221 (338)
T PF09554_consen 159 FETLINQLNVKVEIDLPENNYDLLKEFEDFTKKILNLNPSN----PSLTLNAKIYRVGVTNA-ADRGL 221 (338)
T ss_pred HHHHHHHhCcEEEEecCchhhHHHHHHHHHHHHHhccCCCC----ccccccceeEEeccccc-hhcch
Confidence 45566789999988887653 333323222333332221 12368899999999987 45554
No 104
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.59 E-value=5.6e+02 Score=24.96 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 227 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 227 (302)
+.+..++.+|.....|-..+..|..++....+++.....+.
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~l 83 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEEL 83 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444443
No 105
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=23.54 E-value=5.1e+02 Score=24.21 Aligned_cols=37 Identities=19% Similarity=0.460 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022098 189 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
...+..++..--+||.+.+..|..+....+.+-.+|+
T Consensus 114 ~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e 150 (237)
T cd07657 114 RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFE 150 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666665555555555543
No 106
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=23.51 E-value=4.9e+02 Score=24.93 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022098 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 235 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL 235 (302)
...+.++..++...+.+..+=+.+|..++....+.+.+|..++..+=+-+
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~ 216 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQC 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 36788888999999999999999999999999999999999988765443
No 107
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=23.47 E-value=2.9e+02 Score=26.15 Aligned_cols=45 Identities=20% Similarity=0.282 Sum_probs=34.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 022098 183 TEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 227 (302)
Q Consensus 183 ~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 227 (302)
+...+++...|+++..+..+|..-++.+.+.+++.++...-|-..
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 444577888888888888888888888888888877776655544
No 108
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.23 E-value=5.5e+02 Score=25.12 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
.+....+..|..++.||...+.|-.++.+...++..|.+.-....-+|=-+|-.+...+.
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888889999999999999999999999998777777777666766665544
No 109
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.04 E-value=3.6e+02 Score=26.85 Aligned_cols=62 Identities=16% Similarity=0.274 Sum_probs=38.2
Q ss_pred hhhhhHHHHHHHHHHHHHHH--HhhHHHHH-----HHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHhhhh
Q 022098 184 EEKENLRAVEAEILSKRAEL--SKFESEYR-----EVLAQFTEMTSRYAQE-------MQAIDELLKQRNEIHASY 245 (302)
Q Consensus 184 ~~~~~I~~vE~~l~~KK~EL--~~Fe~EY~-----eak~kf~ev~~r~~~e-------~~~i~~LL~~Re~iy~s~ 245 (302)
..+.+|+++|.|+...++|- ++|+=|=. +.+.+.++....|+.. ++.-+.|=+.|+.|-.++
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 45699999999999888874 34554444 3455555555544433 333455556666665544
No 110
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=23.01 E-value=4.3e+02 Score=25.74 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 022098 184 EEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEM 228 (302)
Q Consensus 184 ~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~ 228 (302)
...++|.+++.++..-+.+|...+++-.+....-+++......++
T Consensus 5 ~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~ 49 (344)
T PF12777_consen 5 NGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQ 49 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888877777777776665443
No 111
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=22.75 E-value=58 Score=23.95 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=13.0
Q ss_pred cceeeccCCceEEEEec
Q 022098 147 CEITELKAGTHVFAVYG 163 (302)
Q Consensus 147 ~e~~~L~pG~Hlf~VYG 163 (302)
+....++||++++.|||
T Consensus 54 i~~~~~~~GtYyi~V~~ 70 (70)
T PF04151_consen 54 ITFTAPAAGTYYIRVYG 70 (70)
T ss_dssp EEEEESSSEEEEEEEE-
T ss_pred EEEEcCCCEEEEEEEEC
Confidence 34456889999999997
No 112
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=22.62 E-value=67 Score=23.71 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=18.5
Q ss_pred cccCccccceeeccCCceEEEEecCcccc
Q 022098 140 KLDGFQPCEITELKAGTHVFAVYGDNFFK 168 (302)
Q Consensus 140 ~Ld~fq~~e~~~L~pG~Hlf~VYGDNwf~ 168 (302)
.+|+=+.....+|+.|.+++|+ |..=||
T Consensus 33 t~~G~~V~~l~~l~dg~~yVa~-g~e~fk 60 (60)
T PF03607_consen 33 TLDGKRVKSLDELEDGGSYVAS-GREPFK 60 (60)
T ss_dssp ETTSSEESSGGGS-TTEEEEEE-SSSS--
T ss_pred CCCCCEeCCHHHHCCCCEEEEE-cCCcCC
Confidence 4556555566789999999999 665553
No 113
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=22.09 E-value=3.5e+02 Score=26.40 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 239 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re 239 (302)
..|.+|.++|....+.-.+...|..+...++..+...|..-.+..+.+++.++
T Consensus 114 ~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~ke 166 (309)
T PF09728_consen 114 ATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKE 166 (309)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56889999999988888888889999999999999999988888888888775
No 114
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.77 E-value=2.4e+02 Score=26.32 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=32.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022098 197 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 197 ~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
...|..|.++...|..-+++|+++...|+ ..|..||.+
T Consensus 107 ~dYr~kL~~ir~~y~~el~kye~ac~eF~---~hV~~lLre 144 (191)
T PF03792_consen 107 SDYRAKLSQIRQIYHSELEKYEQACNEFT---EHVMNLLRE 144 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHH
Confidence 56888889999999999999999888887 668888864
No 115
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=21.66 E-value=5.5e+02 Score=28.23 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 022098 194 AEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 227 (302)
Q Consensus 194 ~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e 227 (302)
.++..++.|+.+...|..+.++.+++-..++.++
T Consensus 530 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~ 563 (782)
T PRK00409 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEE 563 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444444444444433
No 116
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.52 E-value=5.6e+02 Score=28.17 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022098 194 AEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 194 ~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
.++..++.|+.+...|..+.++++++-..++.
T Consensus 525 ~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~ 556 (771)
T TIGR01069 525 KELEQKNEHLEKLLKEQEKLKKELEQEMEELK 556 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333
No 117
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.50 E-value=1.4e+02 Score=24.87 Aligned_cols=49 Identities=27% Similarity=0.433 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 242 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy 242 (302)
..|..++..|...|..|..|+.+-..+... ..+..+++...|..|..+-
T Consensus 62 ~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~-------l~~~~~~i~~~l~~~~~l~ 110 (133)
T PF06148_consen 62 TNLVGMDEKIEELRKPLSQFREEVESVRDE-------LDNTQEEIEDKLEERKELR 110 (133)
T ss_dssp ------------HHHHHHHHHHHHHHHHHS--------STTHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888776655544 4444455555565555543
No 118
>PRK14163 heat shock protein GrpE; Provisional
Probab=21.49 E-value=5.2e+02 Score=24.34 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 189 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
+...+.+|...++++..++..|.-+++-|+-.-.|..++.+.
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~ 83 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVT 83 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777777777777777777766554
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=21.23 E-value=5.1e+02 Score=21.91 Aligned_cols=48 Identities=17% Similarity=0.341 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 234 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~L 234 (302)
..+...+.++.....|+...+...+.+.++..........+++++..+
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666777777777777777777777777777666666665544
No 120
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=21.03 E-value=6.4e+02 Score=22.99 Aligned_cols=18 Identities=22% Similarity=0.501 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhhhhc
Q 022098 229 QAIDELLKQRNEIHASYT 246 (302)
Q Consensus 229 ~~i~~LL~~Re~iy~s~~ 246 (302)
+....|-.+|+++|..|.
T Consensus 114 qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 114 QRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555544
No 121
>PF05717 TnpB_IS66: IS66 Orf2 like protein; InterPro: IPR008878 Thess proteins are found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.98 E-value=96 Score=25.78 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=24.4
Q ss_pred hhccceEEEEEeCCCCceEEEEeeccCCCcceE
Q 022098 61 EARAGFVCRVQSSDKSKFKLLYFDREGTGGLSL 93 (302)
Q Consensus 61 ~~~~GvVi~c~S~~~sKFKLl~FD~e~~Gg~~l 93 (302)
|...|-+..-.+-.+++.|+|++|.+ |+-|
T Consensus 31 dp~~g~~fvF~nr~r~riKiL~wd~~---G~~L 60 (107)
T PF05717_consen 31 DPFSGDLFVFCNRRRDRIKILYWDGD---GFWL 60 (107)
T ss_pred CCCcceEEEEEeccCCceEEEeccCC---ceEE
Confidence 45678888888889999999999996 5455
No 122
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.75 E-value=4.7e+02 Score=22.36 Aligned_cols=40 Identities=18% Similarity=0.408 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022098 195 EILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 234 (302)
Q Consensus 195 ~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~L 234 (302)
.+.....++..++.++.+...+|+.+..=|.+..+++++|
T Consensus 62 ~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 62 ELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3455566777778888888888888888888777777776
No 123
>PRK12765 flagellar capping protein; Provisional
Probab=20.67 E-value=4.3e+02 Score=28.11 Aligned_cols=51 Identities=6% Similarity=0.210 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022098 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
..|++++.++..--.-|...+.-|++=-.+++.++++|.+....+..+|.+
T Consensus 539 ~~~~~l~~~~~~~~~rl~~~~~r~~~qf~alD~~i~~l~~t~s~l~~~~~~ 589 (595)
T PRK12765 539 NEIKSLTTSKESTQELIDTKYETMANKWLQYDSIIAKLEQQFSTLKNMINA 589 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 557888888888888888888888877788889999998888777777654
No 124
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=20.62 E-value=4.4e+02 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.414 Sum_probs=10.4
Q ss_pred eccCCceEEEEecCcccc
Q 022098 151 ELKAGTHVFAVYGDNFFK 168 (302)
Q Consensus 151 ~L~pG~Hlf~VYGDNwf~ 168 (302)
.|...++++-=-|.|||-
T Consensus 54 ~i~~~~~vlV~lG~~~~v 71 (120)
T PF02996_consen 54 KIPDTDKVLVSLGAGYYV 71 (120)
T ss_dssp E-SSTTEEEEEEETTEEE
T ss_pred EeCCCCEEEEEeeCCeEE
Confidence 344556666666777663
No 125
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=20.53 E-value=1e+03 Score=27.62 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=11.2
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 022098 222 SRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 222 ~r~~~e~~~i~~LL~~Re~ 240 (302)
.+=++|...-.+|.++|++
T Consensus 858 r~~eee~~~r~~l~~qr~e 876 (1018)
T KOG2002|consen 858 RKEEEEKARREKLEKQREE 876 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555556677777754
No 126
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.45 E-value=5.4e+02 Score=24.15 Aligned_cols=44 Identities=16% Similarity=0.232 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHhHHH
Q 022098 187 ENLRAVEAEILSKRAELSKF------------ESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~F------------e~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
...+.++..|..||.-+.++ +.|++++..+.+++..+|..-...
T Consensus 133 ~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~ 188 (234)
T cd07664 133 QKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKT 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666544433 346665555555444444443333
No 127
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.10 E-value=7.1e+02 Score=23.17 Aligned_cols=47 Identities=11% Similarity=0.179 Sum_probs=24.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 022098 201 AELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 247 (302)
Q Consensus 201 ~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~ 247 (302)
..|...+..|..-...|+..+..+..+...+..-+..-..=|..+++
T Consensus 244 ~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 244 RQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555556666666655555555545444444555544
No 128
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=20.05 E-value=4e+02 Score=30.03 Aligned_cols=69 Identities=14% Similarity=0.322 Sum_probs=48.4
Q ss_pred ceEEEEEEEcC--C--Chhhh-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 022098 170 ASYMIEALCAA--P--FTEEK-ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 170 ~~ytie~l~~~--~--~~~~~-~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s 244 (302)
-+|+|.|+-.. . .++.. +.|...+..--.+ +++|..+..++++.+..|-.+-+.++.|=+.-+.|++.
T Consensus 812 F~FsISCl~isFsttlISK~kL~~l~t~~~~ky~~-------~~n~l~~~~k~~~L~~~Fi~~~~~~n~lt~le~~l~~~ 884 (911)
T PF05086_consen 812 FSFSISCLKISFSTTLISKNKLNNLKTIVPDKYNK-------EKNLLRKQDKCEKLKKNFISKLKELNKLTKLEEYLISQ 884 (911)
T ss_pred eEEEEEEEEEEEeEEEEehhhhhhhhhhhhHhHhh-------hhhHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 36788887542 2 23333 6666665532222 34577888889999999988888888888888999999
Q ss_pred h
Q 022098 245 Y 245 (302)
Q Consensus 245 ~ 245 (302)
|
T Consensus 885 f 885 (911)
T PF05086_consen 885 F 885 (911)
T ss_pred H
Confidence 8
Done!