Query 022101
Match_columns 302
No_of_seqs 182 out of 377
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2458 Endoplasmic reticulum 100.0 1.2E-64 2.7E-69 494.9 16.6 242 43-292 94-340 (528)
2 PF05686 Glyco_transf_90: Glyc 100.0 1.5E-55 3.2E-60 431.1 16.2 201 76-277 1-201 (395)
3 smart00672 CAP10 Putative lipo 100.0 4.2E-31 9.1E-36 245.7 10.5 122 152-273 1-123 (256)
4 PF07436 Curto_V3: Curtovirus 32.7 19 0.0004 28.4 0.6 23 3-25 10-32 (87)
5 PF01043 SecA_PP_bind: SecA pr 20.7 71 0.0015 26.5 2.0 33 113-147 79-113 (113)
6 TIGR02542 B_forsyth_147 Bacter 19.9 1.1E+02 0.0024 26.2 3.0 32 84-117 91-123 (145)
7 KOG0125 Ataxin 2-binding prote 19.1 1.1E+02 0.0025 30.4 3.2 37 119-162 96-132 (376)
8 KOG3198 Signal recognition par 16.6 2E+02 0.0044 25.4 3.9 34 110-151 75-110 (152)
9 PF01344 Kelch_1: Kelch motif; 16.5 2E+02 0.0043 18.7 3.1 15 112-126 4-18 (47)
10 PF08869 XisI: XisI protein; 14.3 1.7E+02 0.0037 24.4 2.8 40 111-161 57-96 (111)
No 1
>KOG2458 consensus Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif [General function prediction only]
Probab=100.00 E-value=1.2e-64 Score=494.88 Aligned_cols=242 Identities=54% Similarity=1.048 Sum_probs=221.0
Q ss_pred cccccC---C-CCCCcCCCCCCCCCCCcCCCCCCCCCCCCCCCcchhhHhhccCccccCCCCHHHHHHhhccCeeEEEEE
Q 022101 43 TPLNCV---K-NQTQTCPTNYPKTSQTQESISDYSIPPTSTCPDYFRWIHEDLSPWKVTGITRDMLERANQTAHFRLILV 118 (302)
Q Consensus 43 ~~~~~~---~-~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~C~~~F~qI~~DL~Pw~~~GItre~lera~~~g~~Rv~I~ 118 (302)
+.|.|+ + +.+++||++...... .+..++..++..+|||||+|||+||.||+++||||+++++|++.+++|++|+
T Consensus 94 ~~l~cs~~s~~~~~~~~p~~~~~~s~--~~~~~~~~~~~~tCPDyfrWIheDL~Pw~etgItre~~erak~~a~fr~vI~ 171 (528)
T KOG2458|consen 94 YRLYCSLFSGLKREVLCPSSHVSKSP--YILKNPVYHESCTCPDYFRWIHEDLCPWRETGITREMAERAKRKAHFRLVIK 171 (528)
T ss_pred hhhhhhhhhcccccccccccccccCc--cccCCCCCCCCCCCCcHHHHHHHhcCccccccchHHHhhhhhcccceeeeee
Confidence 457883 2 567889998655532 2234477889999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeccCCCCchhHHHHHHHHHHHHHcCCCCCCcEEEeeCCCCccccccCCCCCCCCCCCCeEEecCCCCCceeee
Q 022101 119 NNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVF 198 (302)
Q Consensus 119 nGklYv~~~~~~~~sR~~ftl~~il~lL~~~~~~LPDmEFvfN~~D~P~v~~~~~~g~~~~~~~Pvfsyck~~~~~DIl~ 198 (302)
+|++||+.|++++++|++||+||++|||+++|++|||+||+|||+|||.|.+.+|+| + .+|+|||+||++.+++||||
T Consensus 172 ~g~~yv~~Y~ks~qtrd~ft~wgilqLlr~ypgklPDlElmf~~~D~P~v~~~~~~~-~-~~ppPlF~yCg~~~s~DIVf 249 (528)
T KOG2458|consen 172 EGRLYVENYRKSIQTRDVFTIWGILQLLRTYPGKLPDLELMFNCGDWPLVRKKDFQG-T-PPPPPLFSYCGSSESLDIVF 249 (528)
T ss_pred cCceehhhhhhhhcccchHHHHHHHHHHHhcCCCCCCceeeeecCCccccchhhccC-C-CCCCCeEeecCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999988 3 48999999999999999999
Q ss_pred cCCCccccccccccchHHHHHHHHcccCCCCCCCCcCcEEEeeCCCCh-HhHHHHHhccccCCCCcccceEEeccccccc
Q 022101 199 PDWSFWGWAEINIKPWESLLRELKEGNNGRNWIDREPYAYWKGNPFVA-ETRRDLLTCNLSDKHDWNARLYVQVISFIYI 277 (302)
Q Consensus 199 PDwsFWgWpe~~I~pw~~~~~~i~e~~~~~pW~~K~pkafWRG~~~~~-~~R~~Ll~~~~s~~~~w~a~v~~~dW~~~~~ 277 (302)
|||+||||+|++|++|+.++++|.|||++++|.+|.|+||||||++++ ++|++||+||.+.-.||+++++.|||.+|.
T Consensus 250 Pdwsfwgw~e~nik~w~~~~~~~~egn~~~~W~~r~~yAywrGnp~v~e~~rl~ll~cn~s~~~d~~~~~y~qdw~~E~- 328 (528)
T KOG2458|consen 250 PDWSFWGWAEVNIKPWEKLLEDIVEGNKRPKWKNKNPYAYWRGNPSVAERLRLDLLSCNNSELVDANATLYFQDWSKES- 328 (528)
T ss_pred cCccccCChhhcccccchHHHHHHhhccCCCcccCCceeEecCCCCccccchhhhhhcCCchhhchhhhhHHHhhhhhh-
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999998765
Q ss_pred eeccCCCCCcchHHH
Q 022101 278 THLCSKIPGFNFFLI 292 (302)
Q Consensus 278 ~~~~~~~~~~~~~~~ 292 (302)
.+| .++++||..
T Consensus 329 -~~G--~k~s~l~dq 340 (528)
T KOG2458|consen 329 -KLG--FKQSNLFDQ 340 (528)
T ss_pred -hcc--ccccchhhh
Confidence 455 777777654
No 2
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=100.00 E-value=1.5e-55 Score=431.12 Aligned_cols=201 Identities=53% Similarity=1.099 Sum_probs=190.7
Q ss_pred CCCCCCcchhhHhhccCccccCCCCHHHHHHhhccCeeEEEEECCEEEEEeccCCCCchhHHHHHHHHHHHHHcCCCCCC
Q 022101 76 PTSTCPDYFRWIHEDLSPWKVTGITRDMLERANQTAHFRLILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPD 155 (302)
Q Consensus 76 ~~~~C~~~F~qI~~DL~Pw~~~GItre~lera~~~g~~Rv~I~nGklYv~~~~~~~~sR~~ftl~~il~lL~~~~~~LPD 155 (302)
++.+||+||+||++||+||+++|||+++|++++..+++|++|+||||||+.+++++++|++||+|+|++|+++++++|||
T Consensus 1 ~~~~cp~~f~~I~~dl~~w~~~gIt~~~l~~~~~~~~~r~~I~~g~lYv~~~~~~~~tR~~~t~~~l~~ll~~~p~~lPD 80 (395)
T PF05686_consen 1 SNSQCPDYFRQIHRDLAPWRETGITREMLDRARRRAMFRYVIKDGRLYVESYREMFQTRDMFTLWGLLQLLRRYPGRLPD 80 (395)
T ss_pred CCCCCCccHHHHHHHHHHhhcCCCCHHHHHHHHhcCceEEEEECCEEEEEecccccchhHHHHHHHHHHHHHhCcCCCCC
Confidence 36799999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCccccccCCCCCCCCCCCCeEEecCCCCCceeeecCCCccccccccccchHHHHHHHHcccCCCCCCCCcC
Q 022101 156 LELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVFPDWSFWGWAEINIKPWESLLRELKEGNNGRNWIDREP 235 (302)
Q Consensus 156 mEFvfN~~D~P~v~~~~~~g~~~~~~~Pvfsyck~~~~~DIl~PDwsFWgWpe~~I~pw~~~~~~i~e~~~~~pW~~K~p 235 (302)
|||+|||+|+|.+.+.++.|+.. +++|||+||++.++.|||||||+||||||++|++|+.+++++.+++.++||++|+|
T Consensus 81 ~Ef~~n~~D~P~~~~~~~~~~~~-~~~Pifs~~~~~~~~DIl~Pd~~fwgw~e~~i~~w~~~~~~i~~~~~~~pW~~K~p 159 (395)
T PF05686_consen 81 VEFMFNCDDWPVVRKDDYQGPSA-PPPPIFSYCKSSDTADILFPDFSFWGWPEINIGPWDEDRKDIKEGNERVPWEDKKP 159 (395)
T ss_pred eeEEeECCCCccccccccCCCCc-chhhheeeccccCcCccccCCccccccccccCCchHHHhhhhhccccCCChhhccc
Confidence 99999999999999887666443 78999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCChHhHHHHHhccccCCCCcccceEEeccccccc
Q 022101 236 YAYWKGNPFVAETRRDLLTCNLSDKHDWNARLYVQVISFIYI 277 (302)
Q Consensus 236 kafWRG~~~~~~~R~~Ll~~~~s~~~~w~a~v~~~dW~~~~~ 277 (302)
+|||||+++++..|++|++|+++++++|+|+++.+||..+..
T Consensus 160 ~afWRG~~~~~~~R~~L~~~~~~~~~~~~a~i~~~d~~~~~~ 201 (395)
T PF05686_consen 160 KAFWRGSPTVAETRQRLVRCSRSHPDLWDARITKQDWDKEYK 201 (395)
T ss_pred ceEECCCcCCCcchhHHHHHhccCCccceeeechhhhhhhcc
Confidence 999999999888999999999999999999999999986644
No 3
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=99.97 E-value=4.2e-31 Score=245.66 Aligned_cols=122 Identities=52% Similarity=1.061 Sum_probs=111.7
Q ss_pred CCCCcEEEeeCCCCccccccCCCCCCCCCCCCeEEecCCCCCceeeecCCCcc-ccccccccchHHHHHHHHcccCCCCC
Q 022101 152 RLPDLELMFDCDDRPVIRSRDYSGPNNKGPPPLFRYSGDRWTMDIVFPDWSFW-GWAEINIKPWESLLRELKEGNNGRNW 230 (302)
Q Consensus 152 ~LPDmEFvfN~~D~P~v~~~~~~g~~~~~~~Pvfsyck~~~~~DIl~PDwsFW-gWpe~~I~pw~~~~~~i~e~~~~~pW 230 (302)
+|||+||+||++|+|.+.+..+.+.+..+++|||||||..++.|||||||+|| ||||.++++|+.++.+|.+++.++||
T Consensus 1 ~lPD~ef~~n~~D~p~~~~~~~~~~~~~~~~Pifs~~k~~~~~DIl~P~~~~w~~w~~~~~~~~~~~~~~~~~~~~~~pW 80 (256)
T smart00672 1 RVPDLELMFNCRDWPLINKKSFASYNQHAPPPLFSYCGSDEYLDIVFPDWSFWAGWPEVNGRPWDKDLMELEEGNKRTKW 80 (256)
T ss_pred CCCCeeeeeeCCCccccccCCCCCcccCCCCCeEEecCCCCCCceEecCHHHhCCCccccCcchHHHHHHHHhhhcCCCc
Confidence 58999999999999999887654422246899999999999999999999999 99999999999999999999999999
Q ss_pred CCCcCcEEEeeCCCChHhHHHHHhccccCCCCcccceEEeccc
Q 022101 231 IDREPYAYWKGNPFVAETRRDLLTCNLSDKHDWNARLYVQVIS 273 (302)
Q Consensus 231 ~~K~pkafWRG~~~~~~~R~~Ll~~~~s~~~~w~a~v~~~dW~ 273 (302)
++|+++|||||+++++.+|++|++|+++++++|||+++.++|.
T Consensus 81 ~~K~~~a~WRG~~~~~~~R~~Lv~~~~~~p~~~da~~~~~~~~ 123 (256)
T smart00672 81 SDKNAYAYWRGNPTVASERLDLIKCNQSSPELVNARITIQDWP 123 (256)
T ss_pred cccCcCccccCCCCCCcchHHHHHHhcCCcccceeEEEEecCC
Confidence 9999999999999977789999999988888999999999986
No 4
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=32.71 E-value=19 Score=28.44 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=18.8
Q ss_pred ccceehhhhccCceeeeeeecCc
Q 022101 3 ELFAFSIILQSNFSVHNISRNKT 25 (302)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (302)
-||.|||+||+.-.+-+.|-.++
T Consensus 10 LlFifsillQsgtNfYGTfqSgs 32 (87)
T PF07436_consen 10 LLFIFSILLQSGTNFYGTFQSGS 32 (87)
T ss_pred HHHHHHHHHhcCCceeeeeccch
Confidence 37899999999988888776654
No 5
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=20.70 E-value=71 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=21.8
Q ss_pred eEEEEECCEEEEEec--cCCCCchhHHHHHHHHHHHH
Q 022101 113 FRLILVNNKVYIHKY--KQSIQTRDVFTIWGILQLLR 147 (302)
Q Consensus 113 ~Rv~I~nGklYv~~~--~~~~~sR~~ftl~~il~lL~ 147 (302)
..|+|.||++-+.+. |+..+.|-. -.||||+|.
T Consensus 79 ~dYiV~dg~V~IVDe~TGR~m~gRrw--s~GLHQaIE 113 (113)
T PF01043_consen 79 VDYIVRDGEVVIVDEFTGRIMPGRRW--SDGLHQAIE 113 (113)
T ss_dssp TSEEEETTEEEEBCTTTTSEBTT--S--TTTHHHHHH
T ss_pred cceEEEcCEEEEEECCCCCcCCCCcC--CchhhHhhC
Confidence 368999999998883 444444411 248999874
No 6
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=19.93 E-value=1.1e+02 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.520 Sum_probs=22.1
Q ss_pred hhhHhhccCccccCCCCHHHHHH-hhccCeeEEEE
Q 022101 84 FRWIHEDLSPWKVTGITRDMLER-ANQTAHFRLIL 117 (302)
Q Consensus 84 F~qI~~DL~Pw~~~GItre~ler-a~~~g~~Rv~I 117 (302)
+++|.+.---+. |||||.+.+ +...|..|+..
T Consensus 91 ~r~iF~Epm~YQ--GITReQV~rdGLP~GsYRiCF 123 (145)
T TIGR02542 91 LRQIFREPMVYQ--GITREQVQRDGLPEGSYRICF 123 (145)
T ss_pred HHHHHhhhhhhc--cccHHHHhhcCCCCCceEEEE
Confidence 467766554454 999999977 56667766543
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=19.10 E-value=1.1e+02 Score=30.39 Aligned_cols=37 Identities=19% Similarity=0.494 Sum_probs=27.3
Q ss_pred CCEEEEEeccCCCCchhHHHHHHHHHHHHHcCCCCCCcEEEeeC
Q 022101 119 NNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFDC 162 (302)
Q Consensus 119 nGklYv~~~~~~~~sR~~ftl~~il~lL~~~~~~LPDmEFvfN~ 162 (302)
..||||... -|.+|+ --|-.|-.+| |++=|||++||-
T Consensus 96 pkRLhVSNI--PFrFRd----pDL~aMF~kf-G~VldVEIIfNE 132 (376)
T KOG0125|consen 96 PKRLHVSNI--PFRFRD----PDLRAMFEKF-GKVLDVEIIFNE 132 (376)
T ss_pred CceeEeecC--CccccC----ccHHHHHHhh-CceeeEEEEecc
Confidence 457888774 466775 3556677777 889999999985
No 8
>KOG3198 consensus Signal recognition particle, subunit Srp19 [Intracellular trafficking, secretion, and vesicular transport]
Probab=16.65 E-value=2e+02 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=23.3
Q ss_pred cCeeEEEEE--CCEEEEEeccCCCCchhHHHHHHHHHHHHHcCC
Q 022101 110 TAHFRLILV--NNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPG 151 (302)
Q Consensus 110 ~g~~Rv~I~--nGklYv~~~~~~~~sR~~ftl~~il~lL~~~~~ 151 (302)
.|-+|++++ ||+||+... .+|. .+++++....|+
T Consensus 75 ~GRVRvqlk~edG~l~~~~~----~sr~----~~~~~~a~~ip~ 110 (152)
T KOG3198|consen 75 PGRVRVQLKNEDGTLYVIAF----ISRK----SLMLPIAEMIPE 110 (152)
T ss_pred CceEEEEeeccCCcEEeecc----hhHH----HHHHHhhhhCcc
Confidence 577899997 899999874 5664 355555555444
No 9
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=16.47 E-value=2e+02 Score=18.71 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=12.8
Q ss_pred eeEEEEECCEEEEEe
Q 022101 112 HFRLILVNNKVYIHK 126 (302)
Q Consensus 112 ~~Rv~I~nGklYv~~ 126 (302)
.+.+++.+|++||..
T Consensus 4 ~~~~~~~~~~iyv~G 18 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIG 18 (47)
T ss_dssp SEEEEEETTEEEEEE
T ss_pred cCEEEEECCEEEEEe
Confidence 456899999999987
No 10
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=14.28 E-value=1.7e+02 Score=24.43 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=23.8
Q ss_pred CeeEEEEECCEEEEEeccCCCCchhHHHHHHHHHHHHHcCCCCCCcEEEee
Q 022101 111 AHFRLILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRKYPGRLPDLELMFD 161 (302)
Q Consensus 111 g~~Rv~I~nGklYv~~~~~~~~sR~~ftl~~il~lL~~~~~~LPDmEFvfN 161 (302)
..+|+-|+|||++++..+ +- .+|-.-|.+ ..+|-=+.|+-
T Consensus 57 ~~iH~dI~dgKIWIq~d~----TE-----~gIa~eLve--~GVpk~dIVLg 96 (111)
T PF08869_consen 57 CLIHLDIKDGKIWIQRDG----TE-----DGIAEELVE--AGVPKEDIVLG 96 (111)
T ss_dssp EEEEEEEETTEEEEEEES----SS-----SHHHHHHHH--TT--GGGEEET
T ss_pred EEEEEEEECCeEEEEcCc----hh-----hHHHHHHHH--cCCCHHHEEEc
Confidence 468999999999999842 22 244344443 26775555543
Done!