Query 022101
Match_columns 302
No_of_seqs 182 out of 377
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:01:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fsd_A RBP, putative baseplate 28.3 14 0.00049 30.0 0.4 41 82-127 25-65 (142)
2 1xhj_A Nitrogen fixation prote 18.7 1.5E+02 0.0052 22.4 4.5 48 115-166 33-83 (88)
3 1x3x_A Cytochrome B5; hemoprot 18.6 66 0.0022 23.6 2.4 28 99-127 6-34 (82)
4 1cxy_A Cytochrome B5; helix, b 17.7 70 0.0024 24.0 2.4 29 98-127 9-38 (90)
5 2nvm_A FDXN element excision c 17.6 1E+02 0.0036 25.2 3.5 42 110-163 71-113 (126)
6 1hko_A Cytochrome B5; electron 17.5 79 0.0027 24.5 2.7 28 99-127 11-39 (104)
7 2ibj_A Cytochrome B5, CYTB5; F 17.3 73 0.0025 23.7 2.4 29 98-127 8-37 (88)
8 3fpn_A Geobacillus stearotherm 16.3 1.2E+02 0.004 24.2 3.6 35 91-126 25-61 (119)
9 3lf5_A Cytochrome B5 reductase 16.3 98 0.0033 23.2 2.9 28 99-127 8-36 (88)
10 4gb7_A 6-aminohexanoate-dimer 15.8 2.2E+02 0.0077 26.5 6.0 44 102-148 103-156 (422)
No 1
>2fsd_A RBP, putative baseplate protein; lactococcus lactis, receptor binding protein, head domain, viral protein; 2.30A {Unidentified phage}
Probab=28.26 E-value=14 Score=30.01 Aligned_cols=41 Identities=22% Similarity=0.497 Sum_probs=22.7
Q ss_pred cchhhHhhccCccccCCCCHHHHHHhhccCeeEEEEECCEEEEEec
Q 022101 82 DYFRWIHEDLSPWKVTGITRDMLERANQTAHFRLILVNNKVYIHKY 127 (302)
Q Consensus 82 ~~F~qI~~DL~Pw~~~GItre~lera~~~g~~Rv~I~nGklYv~~~ 127 (302)
-||+.|..|+ ||.. |+|.. -....|..|..|.||-.|++..
T Consensus 25 i~~~~~~~Di-PWTD--i~RAS--GVGssG~L~ARI~NGV~Y~~~~ 65 (142)
T 2fsd_A 25 LYFQGNKKDI-PWTD--LNRAS--GVGSTGILQARIINGVIYVRGN 65 (142)
T ss_dssp --------CE-EEEE--CEECT--TCCSSSEEEEEEETTEEEEEEE
T ss_pred eecccccccC-Cccc--ccccc--ccCccceeeeeEeccEEEEecC
Confidence 4788888776 7873 44311 0123688999999999999874
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=18.72 E-value=1.5e+02 Score=22.44 Aligned_cols=48 Identities=13% Similarity=0.051 Sum_probs=34.1
Q ss_pred EEEECCEEEEEeccCCC--CchhHHHH-HHHHHHHHHcCCCCCCcEEEeeCCCCc
Q 022101 115 LILVNNKVYIHKYKQSI--QTRDVFTI-WGILQLLRKYPGRLPDLELMFDCDDRP 166 (302)
Q Consensus 115 v~I~nGklYv~~~~~~~--~sR~~ftl-~~il~lL~~~~~~LPDmEFvfN~~D~P 166 (302)
+-|.+|.+||.-.|.+- ++- ..|+ .+|.++|+. .+|++.-+..+.|.-
T Consensus 33 v~v~~g~V~V~L~GaC~gCpss-~~TLk~gIE~~L~~---~vPev~~V~~v~~~~ 83 (88)
T 1xhj_A 33 VDVEDGIVKLQLHGACGTCPSS-TITLKAGIERALHE---EVPGVIEVEQVFLEH 83 (88)
T ss_dssp EECCSSEEEEEEESSCCSSCHH-HHHHHHHHHHHHHH---HSTTCCEEEEEECCC
T ss_pred EEEECCEEEEEEeecCCCCcch-HHHHHHHHHHHHHH---hCCCceEEEeccccc
Confidence 44568999998876443 333 3445 489999987 579999888887763
No 3
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=18.59 E-value=66 Score=23.65 Aligned_cols=28 Identities=14% Similarity=0.385 Sum_probs=19.6
Q ss_pred CCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 99 ITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 99 Itre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
+|+++|.+-...+.+ .+|++|++| |..+
T Consensus 6 ~t~~ev~~h~~~~~~-wv~i~g~VYDvT~f 34 (82)
T 1x3x_A 6 YTKEEVAKHNTQNDL-WIIYDGEVHDMTSF 34 (82)
T ss_dssp ECHHHHHTCEETTEE-EEEETTEEEECGGG
T ss_pred cCHHHHHhhCCCCCE-EEEECCEEEECCcc
Confidence 678888774333444 789999999 5444
No 4
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=17.67 E-value=70 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=20.0
Q ss_pred CCCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 98 GItre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 9 ~~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 38 (90)
T 1cxy_A 9 VFTLEQVAEHHSPDDC-WMAIHGKVYDLTPY 38 (90)
T ss_dssp BCCHHHHTTCEETTEE-EEEETTEEEECTTT
T ss_pred CcCHHHHHHhcCCCCE-EEEECCEEEECccc
Confidence 4788888664334444 789999999 4444
No 5
>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} SCOP: d.326.1.1
Probab=17.57 E-value=1e+02 Score=25.17 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=27.1
Q ss_pred cCeeEEEEECCEEEEEeccCCCCchhHHHHHHHH-HHHHHcCCCCCCcEEEeeCC
Q 022101 110 TAHFRLILVNNKVYIHKYKQSIQTRDVFTIWGIL-QLLRKYPGRLPDLELMFDCD 163 (302)
Q Consensus 110 ~g~~Rv~I~nGklYv~~~~~~~~sR~~ftl~~il-~lL~~~~~~LPDmEFvfN~~ 163 (302)
+..+++.|+|||++++.. .+- .+|. +|+++ .+|--+.|+-..
T Consensus 71 ~~iiHldIkdgKIWIq~D----~TE-----~gIa~eLv~~---GIPk~DIVLgFh 113 (126)
T 2nvm_A 71 HIILYLQIQNGKIWIEED----STN-----LAIVDEMLVA---GIPQTDIILGFH 113 (126)
T ss_dssp EEEEEEEEETTEEEEEEC----SST-----THHHHHHHHT---TCCGGGEEETTS
T ss_pred EEEEEEEEeCCeEEEEeC----Cch-----hhHHHHHHHc---CCCHHHEEEccC
Confidence 356899999999999984 222 2443 34443 777666555443
No 6
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=17.49 E-value=79 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=19.9
Q ss_pred CCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 99 ITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 99 Itre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 11 ~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 39 (104)
T 1hko_A 11 YTLEEIQKHNNSKST-WLILHYKVYDLTKF 39 (104)
T ss_dssp ECHHHHHHCBSSSSB-EEEETTEEEEHHHH
T ss_pred cCHHHHHHhcCCCCE-EEEECCEEEECCcc
Confidence 678899774434444 689999999 5444
No 7
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=17.32 E-value=73 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=20.2
Q ss_pred CCCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 98 GItre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
-+|+++|.+-...+.+ .+|++|+|| |..+
T Consensus 8 ~~t~~ev~~h~~~~~~-wv~i~g~VYDvT~f 37 (88)
T 2ibj_A 8 YFTRAEVAKNNTKDKN-WFIIHNNVYDVTAF 37 (88)
T ss_dssp EECHHHHHTSEETTEE-EEEETTEEEECGGG
T ss_pred ccCHHHHHHhCCCCCE-EEEECCEEEECCcc
Confidence 3678888764434444 789999999 5555
No 8
>3fpn_A Geobacillus stearothermophilus UVRA interaction domain; UVRA, nucleotide excision repair, DNA repair, DNA binding protein; 1.80A {Geobacillus stearothermophilus}
Probab=16.33 E-value=1.2e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=26.0
Q ss_pred cCccc--cCCCCHHHHHHhhccCeeEEEEECCEEEEEe
Q 022101 91 LSPWK--VTGITRDMLERANQTAHFRLILVNNKVYIHK 126 (302)
Q Consensus 91 L~Pw~--~~GItre~lera~~~g~~Rv~I~nGklYv~~ 126 (302)
|+|-- ..|--++.++..++.|..|+.| ||++|-.+
T Consensus 25 LAPvv~~rKg~~~~ll~~l~~~Gf~Rvrv-DGe~~~l~ 61 (119)
T 3fpn_A 25 LAPIVSGKKGTHAKTLEDIRKQGYVRVRI-DREMRELT 61 (119)
T ss_dssp EEEEEEEECSCCHHHHHHHHHTTCCEEEE-TTEEEETT
T ss_pred EEEEeeCCCCcHHHHHHHHHhCCCeEEEE-CCEEEecC
Confidence 35543 2577788999998899999766 89988544
No 9
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=16.29 E-value=98 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=19.8
Q ss_pred CCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 99 ITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 99 Itre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
+|.++|.+-...+.+ .+|++|++| |..+
T Consensus 8 ~t~~Ev~~h~~~~~~-wv~i~g~VYDvT~f 36 (88)
T 3lf5_A 8 VTEEELKKHNKKDDC-WICIRGFVYNVSPY 36 (88)
T ss_dssp ECHHHHHHCEETTEE-EEEETTEEEECGGG
T ss_pred eCHHHHHhhCCCCCE-EEEECCEEEECccc
Confidence 568888774444554 678899999 6555
No 10
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=15.84 E-value=2.2e+02 Score=26.47 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=26.3
Q ss_pred HHHHHhhccCeeEEEEECCEEEEEeccCCCC----------chhHHHHHHHHHHHHH
Q 022101 102 DMLERANQTAHFRLILVNNKVYIHKYKQSIQ----------TRDVFTIWGILQLLRK 148 (302)
Q Consensus 102 e~lera~~~g~~Rv~I~nGklYv~~~~~~~~----------sR~~ftl~~il~lL~~ 148 (302)
+.+++..-.| -++|+||++-.|.|...+. ++ .+|-.++.+|+.+
T Consensus 103 ~~l~~~~t~a--~lV~k~GkIv~E~Y~~~~~~dt~~~i~SvtK-s~ta~~i~~lve~ 156 (422)
T 4gb7_A 103 ELLDDNKTDA--FVVVHNGQLVYERYFNGYNESEPHGMASLAK-VFTGAIIQSLAEE 156 (422)
T ss_dssp HHHHHTTEEE--EEEEETTEEEEEEECTTCCTTSCEECGGGGH-HHHHHHHHHHHHT
T ss_pred HHHHhcCCCE--EEEEECCEEEEEeCCCCCCCCCeeeeeeccH-HHHHHHHHHHHHc
Confidence 3444443334 3799999999888754321 34 3444566666664
Done!