Query 022101
Match_columns 302
No_of_seqs 182 out of 377
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 14:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022101.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022101hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1veha_ d.52.8.1 (A:) HIRA-int 34.1 24 0.0018 25.3 4.5 49 114-165 39-89 (92)
2 d1xhja_ d.52.8.1 (A:) Nitrogen 20.7 64 0.0047 22.7 4.7 47 114-163 32-80 (88)
3 d1tf5a1 a.162.1.1 (A:227-348) 20.5 22 0.0016 26.7 2.0 33 114-148 79-113 (122)
4 d1kbia2 d.120.1.1 (A:1-97) Fla 18.0 28 0.0021 24.8 2.1 29 98-127 10-39 (97)
5 d2ozga1 d.106.1.4 (A:291-395) 16.8 69 0.005 22.7 4.1 19 110-128 32-50 (105)
6 d1nkta1 a.162.1.1 (A:226-349) 16.5 21 0.0015 27.0 1.0 33 114-148 81-115 (124)
7 d1cxya_ d.120.1.1 (A:) Cytochr 13.8 48 0.0035 22.5 2.4 28 99-127 5-33 (81)
8 d2nlva1 d.326.1.1 (A:1-111) Hy 12.5 73 0.0053 23.6 3.2 40 111-162 57-97 (111)
9 d1soxa2 d.120.1.1 (A:3-93) Sul 12.4 45 0.0033 23.2 1.9 28 99-127 5-34 (91)
10 d2etva1 c.92.2.4 (A:25-358) Pu 11.9 40 0.0029 28.1 1.7 43 116-158 249-292 (334)
No 1
>d1veha_ d.52.8.1 (A:) HIRA-interacting protein 5, HIRIP5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.07 E-value=24 Score=25.33 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=35.4
Q ss_pred EEEEECCEEEEEeccCCCC-chhHHHH-HHHHHHHHHcCCCCCCcEEEeeCCCC
Q 022101 114 RLILVNNKVYIHKYKQSIQ-TRDVFTI-WGILQLLRKYPGRLPDLELMFDCDDR 165 (302)
Q Consensus 114 Rv~I~nGklYv~~~~~~~~-sR~~ftl-~~il~lL~~~~~~LPDmEFvfN~~D~ 165 (302)
-+-|.+|.|||+-.+.+.. .-...|+ .+|.++|+. .+|.+.=|+.+.|.
T Consensus 39 lv~v~~g~V~v~l~GaC~gCp~s~~Tlk~~Ie~~L~~---~vpev~~V~~v~~~ 89 (92)
T d1veha_ 39 YRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQF---YIPEVEGVEQVSGP 89 (92)
T ss_dssp EEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHH---HCSSCCCEEECSCS
T ss_pred EEEeeCCeEEEEEccCCCCChhHHHHHHHHHHHHHHH---HCCCcceEEEcCCC
Confidence 4678999999998765443 1122343 788888887 68999989888774
No 2
>d1xhja_ d.52.8.1 (A:) Nitrogen fixation protein NifU homolog SE0630 {Staphylococcus epidermidis [TaxId: 1282]}
Probab=20.68 E-value=64 Score=22.70 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=32.5
Q ss_pred EEEEECCEEEEEeccCCCC-chhHHHH-HHHHHHHHHcCCCCCCcEEEeeCC
Q 022101 114 RLILVNNKVYIHKYKQSIQ-TRDVFTI-WGILQLLRKYPGRLPDLELMFDCD 163 (302)
Q Consensus 114 Rv~I~nGklYv~~~~~~~~-sR~~ftl-~~il~lL~~~~~~LPDmEFvfN~~ 163 (302)
-+-|.+|.+||.-.+.+-. .-...|+ .+|.++|+. .+|++.=+.++.
T Consensus 32 lv~v~~g~V~v~l~GaC~gC~~s~~Tlk~~Ie~~L~~---~vpev~~V~~V~ 80 (88)
T d1xhja_ 32 LVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHE---EVPGVIEVEQVF 80 (88)
T ss_dssp EEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHH---HSTTCCEEEEEE
T ss_pred EEeccCCEEEEEecCCCCCCccHHHHHHHHHHHHHHH---HCCCCceEEEec
Confidence 3567899999998765433 2223445 788899987 688877776653
No 3
>d1tf5a1 a.162.1.1 (A:227-348) Pre-protein crosslinking domain of SecA {Bacillus subtilis [TaxId: 1423]}
Probab=20.46 E-value=22 Score=26.72 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=24.0
Q ss_pred EEEEECCEEEEEec--cCCCCchhHHHHHHHHHHHHH
Q 022101 114 RLILVNNKVYIHKY--KQSIQTRDVFTIWGILQLLRK 148 (302)
Q Consensus 114 Rv~I~nGklYv~~~--~~~~~sR~~ftl~~il~lL~~ 148 (302)
.|+|+||++-+++. |+...-|.. -.||||+|..
T Consensus 79 ~YiV~~~~v~ivDe~TGR~~~gr~~--~~GlhQaiEa 113 (122)
T d1tf5a1 79 DYVVEDGQVVIVDSFTGRLMKGRRY--SEGLHQAIEA 113 (122)
T ss_dssp TEEEETTEEEEBCTTTCCBCTTCCC--STTHHHHHHH
T ss_pred ceeecCCeEEEEeccCCCCccCccc--CcHHHHHHHH
Confidence 58999999998883 555554421 2499999975
No 4
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.97 E-value=28 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 98 GITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 98 GItre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
.||.++|.+-...+.+ .+|++|+|| +..+
T Consensus 10 ~it~~EV~~H~~~~d~-Wvvi~g~VYDvT~f 39 (97)
T d1kbia2 10 KISPAEVAKHNKPDDC-WVVINGYVYDLTRF 39 (97)
T ss_dssp CBCTTHHHHCEETTEE-EEEETTEEEECTTT
T ss_pred ccCHHHHHHhCCCCCE-EEEECCEEEecchh
Confidence 5888898775444555 799999999 5444
No 5
>d2ozga1 d.106.1.4 (A:291-395) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=16.75 E-value=69 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=16.3
Q ss_pred cCeeEEEEECCEEEEEecc
Q 022101 110 TAHFRLILVNNKVYIHKYK 128 (302)
Q Consensus 110 ~g~~Rv~I~nGklYv~~~~ 128 (302)
.|.+++.|.+|+.-++...
T Consensus 32 ~G~~~l~~~~G~~~v~~~~ 50 (105)
T d2ozga1 32 QGKFILSVANGKSEVTKGG 50 (105)
T ss_dssp SEEEEEEEETTEEEEEECS
T ss_pred CceEEEEEeCCeEEEeECC
Confidence 5889999999999988743
No 6
>d1nkta1 a.162.1.1 (A:226-349) Pre-protein crosslinking domain of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.45 E-value=21 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=23.9
Q ss_pred EEEEECCEEEEEec--cCCCCchhHHHHHHHHHHHHH
Q 022101 114 RLILVNNKVYIHKY--KQSIQTRDVFTIWGILQLLRK 148 (302)
Q Consensus 114 Rv~I~nGklYv~~~--~~~~~sR~~ftl~~il~lL~~ 148 (302)
.|+|.||++-+++. |+...-|.. -.||||+|..
T Consensus 81 dYiV~d~~v~ivDe~TGR~~~grr~--s~GLHQaiEa 115 (124)
T d1nkta1 81 DYIVRDGEVLIVDEFTGRVLIGRRY--NEGMHQAIEA 115 (124)
T ss_dssp TEEECSSCEEEBCSSSCCBCTTCCC--STTHHHHHHH
T ss_pred eEEEecCeEEEEeccCCCcccCCCc--ChHHHHHHHH
Confidence 69999999998883 555554421 2499999975
No 7
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira vacuolata [TaxId: 1054]}
Probab=13.78 E-value=48 Score=22.54 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=19.2
Q ss_pred CCHHHHHHhhccCeeEEEEECCEEE-EEec
Q 022101 99 ITRDMLERANQTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 99 Itre~lera~~~g~~Rv~I~nGklY-v~~~ 127 (302)
+|.++|.+-...+.+ .+|++|+|| |..+
T Consensus 5 ~t~~ev~~H~~~~d~-Wivi~g~VYDvT~f 33 (81)
T d1cxya_ 5 FTLEQVAEHHSPDDC-WMAIHGKVYDLTPY 33 (81)
T ss_dssp CCHHHHTTCEETTEE-EEEETTEEEECTTT
T ss_pred cCHHHHHhhCCCCCE-EEEECCEEEeccce
Confidence 678888664334444 688999999 5444
No 8
>d2nlva1 d.326.1.1 (A:1-111) Hypothetical protein Ava3825 {Anabaena variabilis [TaxId: 1172]}
Probab=12.52 E-value=73 Score=23.59 Aligned_cols=40 Identities=8% Similarity=0.226 Sum_probs=25.7
Q ss_pred CeeEEEEECCEEEEEeccCCCCchhHHHHHHH-HHHHHHcCCCCCCcEEEeeC
Q 022101 111 AHFRLILVNNKVYIHKYKQSIQTRDVFTIWGI-LQLLRKYPGRLPDLELMFDC 162 (302)
Q Consensus 111 g~~Rv~I~nGklYv~~~~~~~~sR~~ftl~~i-l~lL~~~~~~LPDmEFvfN~ 162 (302)
..+|+-|+|||++++..+ ... || .+|+++ .+|-=+.|+-.
T Consensus 57 ~~iHldI~d~KIWIq~D~--TE~-------gIa~eLv~~---GVPk~dIVLgF 97 (111)
T d2nlva1 57 CVIHFDIKDGKIWLQQNL--TDR-------NPAEELVMM---GVPREDIVLGL 97 (111)
T ss_dssp EEEEEEEETTEEEEEEEC--SSS-------CHHHHHHHT---TCCGGGEEETT
T ss_pred EEEEEEEeCCeEEEEeCC--ccc-------cHHHHHHHc---CCCHHHEEEec
Confidence 468999999999999842 222 22 245554 77755555443
No 9
>d1soxa2 d.120.1.1 (A:3-93) Sulfite oxidase, N-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=12.38 E-value=45 Score=23.23 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=18.2
Q ss_pred CCHHHHHHhh-ccCeeEEEEECCEEE-EEec
Q 022101 99 ITRDMLERAN-QTAHFRLILVNNKVY-IHKY 127 (302)
Q Consensus 99 Itre~lera~-~~g~~Rv~I~nGklY-v~~~ 127 (302)
+|+++|.+-. ..+.+ .+|++|+|| |..+
T Consensus 5 ~T~~Ev~~H~~~~~~~-Wiii~g~VYDvT~f 34 (91)
T d1soxa2 5 YTREEVGRHRSPEERV-WVTHGTDVFDVTDF 34 (91)
T ss_dssp ECHHHHTTCEETTTEE-EEEETTEEEECTTT
T ss_pred cCHHHHHHhCCCCCce-EEEECCEEEeccce
Confidence 5788886632 23323 689999999 5544
No 10
>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189 {Thermotoga maritima [TaxId: 2336]}
Probab=11.90 E-value=40 Score=28.15 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=24.6
Q ss_pred EEECCEEEEEeccCCCCchhHHHHHHHHHHHHH-cCCCCCCcEE
Q 022101 116 ILVNNKVYIHKYKQSIQTRDVFTIWGILQLLRK-YPGRLPDLEL 158 (302)
Q Consensus 116 ~I~nGklYv~~~~~~~~sR~~ftl~~il~lL~~-~~~~LPDmEF 158 (302)
.|+|||+|.......+..+..-.+.+++.|.+. +|+..+|+++
T Consensus 249 AVkngrVy~v~~~~~~~~~~~~~~~~~~~lAk~lyPe~F~did~ 292 (334)
T d2etva1 249 AVKRGKVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDP 292 (334)
T ss_dssp HHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHHHCGGGCTTCCH
T ss_pred hhhcCcEEEECchhhccCChhHHHHHHHHHHHHhCcccCCCCCH
Confidence 368999997653333333321123445444433 7888898875
Done!