Your job contains 1 sequence.
>022104
MSSSAMDAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAK
VYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSV
DSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKL
QPVPPSVSFKGEGHGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI
KHNRGSKLIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT
IN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022104
(302 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2129420 - symbol:AT4G17760 species:3702 "Arabi... 1240 2.9e-126 1
UNIPROTKB|E1C4I3 - symbol:RAD1 "Uncharacterized protein" ... 233 6.0e-22 2
MGI|MGI:1316678 - symbol:Rad1 "RAD1 homolog (S. pombe)" s... 227 1.6e-21 2
RGD|1306496 - symbol:Rad1 "RAD1 homolog (S. pombe)" speci... 223 4.1e-21 2
UNIPROTKB|Q8AY27 - symbol:rad1 "PCNA-like DNA checkpoint ... 220 8.4e-21 2
ZFIN|ZDB-GENE-040426-1873 - symbol:rad1 "RAD1 homolog (S.... 220 1.1e-20 2
UNIPROTKB|O60671 - symbol:RAD1 "Cell cycle checkpoint pro... 213 4.5e-20 2
UNIPROTKB|F1SND5 - symbol:RAD1 "Uncharacterized protein" ... 211 7.3e-20 2
UNIPROTKB|E1BB72 - symbol:RAD1 "Uncharacterized protein" ... 206 2.4e-19 2
UNIPROTKB|E2QYH8 - symbol:RAD1 "Uncharacterized protein" ... 195 9.7e-16 2
FB|FBgn0026778 - symbol:Rad1 "Radiation insensitive 1" sp... 152 1.1e-08 1
DICTYBASE|DDB_G0269378 - symbol:rad1 "checkpoint clamp co... 124 6.0e-05 1
>TAIR|locus:2129420 [details] [associations]
symbol:AT4G17760 species:3702 "Arabidopsis thaliana"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=RCA]
InterPro:IPR003021 Pfam:PF02144 PRINTS:PR01245 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006281 KO:K02830
PANTHER:PTHR10870 OMA:CKVSVRT EMBL:AY133712 EMBL:BT010889
EMBL:AK176015 EMBL:AJ608271 IPI:IPI00521744 RefSeq:NP_193511.2
UniGene:At.32969 ProteinModelPortal:Q8L7G8 IntAct:Q8L7G8
PRIDE:Q8L7G8 DNASU:827497 EnsemblPlants:AT4G17760.1 GeneID:827497
KEGG:ath:AT4G17760 TAIR:At4g17760 HOGENOM:HOG000030142
InParanoid:Q8L7G8 PhylomeDB:Q8L7G8 ProtClustDB:CLSN2690987
Genevestigator:Q8L7G8 Uniprot:Q8L7G8
Length = 300
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 226/298 (75%), Positives = 264/298 (88%)
Query: 2 SSSAMDAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKV 61
SS A++ ++PDL+CQLDNVQG+VDAL+ VRWKRHQDA++ELSEHGI+LIVEE+GCLQAKV
Sbjct: 5 SSPAIEPDTPDLICQLDNVQGMVDALTCVRWKRHQDALVELSEHGIVLIVEESGCLQAKV 64
Query: 62 YLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVD 121
YLQRELF +YEY AQGRPRFG+SLGL DCLNTFS+PGHS+ IEI+YPGPDM+LL+KSVD
Sbjct: 65 YLQRELFTKYEYGAQGRPRFGISLGLLVDCLNTFSSPGHSNTIEIKYPGPDMELLLKSVD 124
Query: 122 SPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQ 181
+ ++CIY+E+RTRIP+ ++WDYNFE AG PLTFTVKSAALKEAIDDLEWPGSS+QI LQ
Sbjct: 125 TLNSCIYSEIRTRIPETVTWDYNFEQAGIAPLTFTVKSAALKEAIDDLEWPGSSVQISLQ 184
Query: 182 PVPPSVSFKGEGHGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241
PP V F+GEGHGDLQIDFMYY NTDLL+AFHCD EVSY YKYKFL+ATT+N+PG V++
Sbjct: 185 KEPPCVIFRGEGHGDLQIDFMYYANTDLLLAFHCDTEVSYGYKYKFLKATTANIPGNVVR 244
Query: 242 HNRGSKLIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDED 299
NRGSKL IGRGGMLKVQHLVSV++ P +SAGYQ PS+IAYIEFFVKPEE D
Sbjct: 245 ENRGSKLTIGRGGMLKVQHLVSVSKALA--PQVESAGYQPPSRIAYIEFFVKPEEPAD 300
>UNIPROTKB|E1C4I3 [details] [associations]
symbol:RAD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006281 "DNA repair" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144
PRINTS:PR01245 PRINTS:PR01246 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 PANTHER:PTHR10870
OMA:CKVSVRT GeneTree:ENSGT00500000044913 EMBL:AADN02052106
IPI:IPI00600125 Ensembl:ENSGALT00000005321 Uniprot:E1C4I3
Length = 279
Score = 233 (87.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 69/252 (27%), Positives = 119/252 (47%)
Query: 2 SSSAMDAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKV 61
+ S E L LDN + L L AV ++ H A + +G+ + VE+ C+QA
Sbjct: 5 TQSPASGEQYVLTASLDNARNLSSLLRAVHFQDH--ATCFATANGLRVTVEDAKCIQANA 62
Query: 62 YLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVK 118
++Q E+F + + F ++L +F DCL F A PG S+ + + Y G L++
Sbjct: 63 FIQAEIFQEFHVQEES-VMFRINLAVFLDCLTIFGASSLPGTSTALRMCYRGYGHPLML- 120
Query: 119 SVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQI 178
++ + T+ P+ + D+NF + + ++S L+EA +L+ +QI
Sbjct: 121 FLEEGGVVTVCRINTQEPEDLL-DFNF-CSTNVVNKIILQSDGLREAFSELDMTSEVLQI 178
Query: 179 KLQPVPPSVSFKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP- 236
+ P P G+ G +D Y ++DL+ AFHC++ + RYK L+ +T L
Sbjct: 179 TMSPDKPYFRLSTFGNAGSAHLD--YPKDSDLMEAFHCNQTQTNRYKISLLKPSTKALAL 236
Query: 237 GCVIK---HNRG 245
C + NRG
Sbjct: 237 SCKVSIRTDNRG 248
Score = 37 (18.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P E+
Sbjct: 259 EDGQICFVEYYCCPNEE 275
>MGI|MGI:1316678 [details] [associations]
symbol:Rad1 "RAD1 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000077 "DNA damage checkpoint" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0008853
"exodeoxyribonuclease III activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0071479 "cellular response
to ionizing radiation" evidence=ISO] InterPro:IPR003011
InterPro:IPR003021 Pfam:PF02144 PRINTS:PR01245 PRINTS:PR01246
EMBL:AF038841 MGI:MGI:1316678 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 GO:GO:0008853 KO:K02830
PANTHER:PTHR10870 CTD:5810 eggNOG:NOG324428 HOGENOM:HOG000008015
HOVERGEN:HBG053058 OMA:CKVSVRT OrthoDB:EOG4V9TR5 EMBL:AF074718
EMBL:AF073523 EMBL:AF076842 EMBL:AJ004976 EMBL:AF058394
EMBL:AF084514 EMBL:AK146533 EMBL:AK148098 EMBL:AK150466
EMBL:AK168588 EMBL:BC048693 IPI:IPI00316229 IPI:IPI00742429
RefSeq:NP_035362.2 UniGene:Mm.38376 ProteinModelPortal:Q9QWZ1
SMR:Q9QWZ1 STRING:Q9QWZ1 PhosphoSite:Q9QWZ1 PRIDE:Q9QWZ1
Ensembl:ENSMUST00000022856 Ensembl:ENSMUST00000100775 GeneID:19355
KEGG:mmu:19355 UCSC:uc007vgh.1 UCSC:uc007vgi.1
GeneTree:ENSGT00500000044913 InParanoid:Q9QWZ1 NextBio:296395
Bgee:Q9QWZ1 CleanEx:MM_RAD1 Genevestigator:Q9QWZ1
GermOnline:ENSMUSG00000022248 Uniprot:Q9QWZ1
Length = 280
Score = 227 (85.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 68/241 (28%), Positives = 120/241 (49%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q ++F +
Sbjct: 17 LVASLDNVRNLSTVLKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQADVFQEFV 74
Query: 73 YSAQGRPRFGVSLGLFADCLNTF-SAPGHSSLIEIR--YPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F S+P +L +R Y G L++ ++
Sbjct: 75 IQEES-VTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLML-FLEEGGVVTVC 132
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSF 189
++ T+ P+ + D++F + + ++S L+EA +L+ G +QI + P P
Sbjct: 133 KITTQEPEE-TLDFDF-CSTNVMNKIILQSEGLREAFSELDMTGDVLQITVSPDKPYFRL 190
Query: 190 KGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HNR 244
G+ G+ +D Y ++DL+ AFHCD+ RYK L+ +T L C + NR
Sbjct: 191 STFGNAGNSHLD--YPKDSDLVEAFHCDKTQVNRYKLSLLKPSTKALALSCKVSIRTDNR 248
Query: 245 G 245
G
Sbjct: 249 G 249
Score = 39 (18.8 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 260 EDGQICFVEYYCCPDEE 276
>RGD|1306496 [details] [associations]
symbol:Rad1 "RAD1 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000077 "DNA damage checkpoint" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA;ISO] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=ISO] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144 PRINTS:PR01245
PRINTS:PR01246 RGD:1306496 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 KO:K02830
PANTHER:PTHR10870 CTD:5810 OMA:CKVSVRT OrthoDB:EOG4V9TR5
GeneTree:ENSGT00500000044913 EMBL:CH474058 IPI:IPI00192030
RefSeq:NP_001099889.1 UniGene:Rn.27018 Ensembl:ENSRNOT00000024557
GeneID:294800 KEGG:rno:294800 NextBio:638602 Uniprot:D3ZC52
Length = 280
Score = 223 (83.6 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 68/241 (28%), Positives = 120/241 (49%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ +K H A +++GI + VE C+QA ++Q ++F +
Sbjct: 17 LVASLDNVRNLSTVLKAIHFKEH--ATCFATKNGIKVTVENAKCVQANAFIQADVFQEFI 74
Query: 73 YSAQGRPRFGVSLGLFADCLNTF-SAPGHSSLIEIR--YPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F S+P +L +R Y G L++ ++
Sbjct: 75 IQEES-VTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLML-FLEEGGVVTVC 132
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSF 189
++ T+ P+ + D++F + + ++S L+EA +L+ G +QI + P P
Sbjct: 133 KITTQEPED-TLDFDF-CSTNVMNKIILQSEGLREAFSELDMTGDVLQITVSPDKPYFRL 190
Query: 190 KGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HNR 244
G+ G+ +D Y ++DL+ AFHC++ RYK L+ +T L C + NR
Sbjct: 191 STFGNAGNSHLD--YPKDSDLVEAFHCNKTQINRYKLSLLKPSTKALALSCKVSIRTDNR 248
Query: 245 G 245
G
Sbjct: 249 G 249
Score = 39 (18.8 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 260 EDGQICFVEYYCCPDEE 276
>UNIPROTKB|Q8AY27 [details] [associations]
symbol:rad1 "PCNA-like DNA checkpoint protein Rad1"
species:8355 "Xenopus laevis" [GO:0008408 "3'-5' exonuclease
activity" evidence=ISS] InterPro:IPR003011 InterPro:IPR003021
Pfam:PF02144 PRINTS:PR01245 PRINTS:PR01246 GO:GO:0005634
GO:GO:0000077 GO:GO:0006281 GO:GO:0008408 KO:K02830
PANTHER:PTHR10870 CTD:5810 HOVERGEN:HBG053058 EMBL:AY126669
EMBL:AY253233 RefSeq:NP_001082324.1 UniGene:Xl.50667 GeneID:398405
KEGG:xla:398405 Xenbase:XB-GENE-979334 Uniprot:Q8AY27
Length = 281
Score = 220 (82.5 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 67/242 (27%), Positives = 115/242 (47%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
L C LDNV+ L + L A+ +K H + +G+ + VE CLQA ++Q +F +
Sbjct: 16 LTCSLDNVRNLSNILKAIHFKDHASCFA--TNNGLKVTVENAKCLQANAFIQAGIFQEFN 73
Query: 73 YSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYA 129
+ F V+L + DCL F A PG + +++ Y G L++ ++
Sbjct: 74 IREESVV-FRVNLTVLLDCLTIFGASAGPGTPTALKMCYQGYGHPLIL-FLEEGGVVTVC 131
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLT-FTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVS 188
++ T+ P+ + D++F + L ++S L+EA +L+ +QI + P P
Sbjct: 132 KINTQEPEE-TLDFDF--CSTNVLNKIILQSEGLREAFAELDMTSEFLQIIMSPDKPYFR 188
Query: 189 FKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HN 243
G+ G +D Y ++DL+ AFHC + + RYK L+ +T L C + N
Sbjct: 189 LSTFGNAGSAHLD--YPKDSDLIEAFHCTQTQTNRYKISLLKPSTKALALSCKVSIRTDN 246
Query: 244 RG 245
RG
Sbjct: 247 RG 248
Score = 39 (18.8 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 259 EDGQICFVEYYCCPDEE 275
>ZFIN|ZDB-GENE-040426-1873 [details] [associations]
symbol:rad1 "RAD1 homolog (S. pombe)" species:7955
"Danio rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0000077 "DNA damage checkpoint"
evidence=IEA] InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144
PRINTS:PR01245 PRINTS:PR01246 ZFIN:ZDB-GENE-040426-1873
GO:GO:0005634 GO:GO:0000077 GO:GO:0006281 PANTHER:PTHR10870
HOVERGEN:HBG053058 EMBL:BC049464 IPI:IPI00504469 UniGene:Dr.77004
ProteinModelPortal:Q7ZWD7 STRING:Q7ZWD7 InParanoid:Q7ZWD7
ArrayExpress:Q7ZWD7 Uniprot:Q7ZWD7
Length = 279
Score = 220 (82.5 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 69/266 (25%), Positives = 125/266 (46%)
Query: 2 SSSAMDAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKV 61
+ S D + L+ LDN + L + L A+ +K H A+ +++G+ + VE++ CLQA
Sbjct: 5 TQSQSDVDQYILIASLDNARNLSNILKAISFKDH--AIFNATQNGLKVTVEDSKCLQANA 62
Query: 62 YLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTF---SAPGHSSLIEIRYPGPDMQLLVK 118
++Q ++F Y + F V+L + DCL F + PG + + + Y G L +
Sbjct: 63 FIQADIFQEYIIK-EDTVGFQVNLTVLLDCLTIFGGSTVPGVCTALRMCYNGYGYPLTL- 120
Query: 119 SVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQI 178
++ ++ T+ P+ D++F T ++S +LKEA +L+ +QI
Sbjct: 121 FLEEGGVVTVCKINTQEPEE-PIDFDFCSTNVTNKVI-LQSDSLKEAFSELDMTSEVLQI 178
Query: 179 KLQPVPPSVSFKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP- 236
+ P P G+ G+ D Y ++D++ F C + + RYK L+ +T L
Sbjct: 179 TMSPSHPYFRLSTFGNSGNAHYD--YPKDSDMMELFQCTKIQTNRYKMSLLKPSTKALAL 236
Query: 237 GCVIKHNRGSKLIIGRGGMLKVQHLV 262
C + S+ G L +Q+LV
Sbjct: 237 SCKVSVRTDSR------GFLSLQYLV 256
Score = 38 (18.4 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 284 QIAYIEFFVKPEED 297
QI ++E++ P+E+
Sbjct: 262 QICFVEYYCCPDEE 275
>UNIPROTKB|O60671 [details] [associations]
symbol:RAD1 "Cell cycle checkpoint protein RAD1"
species:9606 "Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000075 "cell cycle checkpoint" evidence=NAS;TAS] [GO:0000077
"DNA damage checkpoint" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=TAS] [GO:0007128 "meiotic prophase
I" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR003011 InterPro:IPR003021
Pfam:PF02144 PRINTS:PR01245 PRINTS:PR01246 GO:GO:0000077
Pathway_Interaction_DB:telomerasepathway Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003684 GO:GO:0006260 GO:GO:0006281
GO:GO:0008408 GO:GO:0071479 EMBL:CH471119 GO:GO:0008853
GO:GO:0007128 PDB:3A1J PDB:3G65 PDB:3GGR PDBsum:3A1J PDBsum:3G65
PDBsum:3GGR KO:K02830 PANTHER:PTHR10870 EMBL:AF074717 EMBL:AF073524
EMBL:AF030933 EMBL:AF076841 EMBL:AF090170 EMBL:AJ004974
EMBL:AJ004975 EMBL:AF011905 EMBL:AF058392 EMBL:AF084512
EMBL:AF084513 EMBL:AK002112 EMBL:BT006908 EMBL:DQ451401
EMBL:BC006837 EMBL:BC009804 EMBL:BC037857 EMBL:AB183821
EMBL:AB183822 IPI:IPI00003647 IPI:IPI00107483 IPI:IPI00654688
RefSeq:NP_002844.1 UniGene:Hs.38114 ProteinModelPortal:O60671
SMR:O60671 DIP:DIP-46061N IntAct:O60671 MINT:MINT-1853000
STRING:O60671 PhosphoSite:O60671 PRIDE:O60671 DNASU:5810
Ensembl:ENST00000325577 Ensembl:ENST00000341754
Ensembl:ENST00000382038 GeneID:5810 KEGG:hsa:5810 UCSC:uc003jiw.3
CTD:5810 GeneCards:GC05M034905 HGNC:HGNC:9806 HPA:HPA006692
MIM:603153 neXtProt:NX_O60671 PharmGKB:PA34166 eggNOG:NOG324428
HOGENOM:HOG000008015 HOVERGEN:HBG053058 InParanoid:O60671
OMA:CKVSVRT OrthoDB:EOG4V9TR5 PhylomeDB:O60671 ChiTaRS:RAD1
EvolutionaryTrace:O60671 GenomeRNAi:5810 NextBio:22636
ArrayExpress:O60671 Bgee:O60671 CleanEx:HS_RAD1
Genevestigator:O60671 GermOnline:ENSG00000113456 Uniprot:O60671
Length = 282
Score = 213 (80.0 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 64/242 (26%), Positives = 117/242 (48%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q +F ++
Sbjct: 17 LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFK 74
Query: 73 YSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F + PG + + + Y G L++ ++
Sbjct: 75 VQEES-VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLML-FLEEGGVVTVC 132
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLT-FTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVS 188
++ T+ P+ + D++F + + ++S L+EA +L+ +QI + P P
Sbjct: 133 KINTQEPEE-TLDFDF--CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFR 189
Query: 189 FKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HN 243
G+ G +D Y ++DL+ AFHC++ RYK L+ +T L C + N
Sbjct: 190 LSTFGNAGSSHLD--YPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDN 247
Query: 244 RG 245
RG
Sbjct: 248 RG 249
Score = 39 (18.8 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 260 EDGQICFVEYYCCPDEE 276
>UNIPROTKB|F1SND5 [details] [associations]
symbol:RAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144
PRINTS:PR01245 PRINTS:PR01246 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 KO:K02830
PANTHER:PTHR10870 OMA:CKVSVRT GeneTree:ENSGT00500000044913
EMBL:CU914241 RefSeq:XP_003133926.1 UniGene:Ssc.13526
Ensembl:ENSSSCT00000018321 GeneID:100513318 KEGG:ssc:100513318
Uniprot:F1SND5
Length = 281
Score = 211 (79.3 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 66/249 (26%), Positives = 119/249 (47%)
Query: 7 DAESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRE 66
D LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q
Sbjct: 10 DESDYSLVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAG 67
Query: 67 LFVRYEYSAQGRP-RFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDS 122
+F E++ Q F ++L + DCL+ F + PG + + + Y G L++ ++
Sbjct: 68 IF--QEFTVQEESVTFRINLTVLLDCLSIFGSSPVPGTLTALRMCYQGYGYPLML-FLEE 124
Query: 123 PDACIYAEVRTRIPDMISWDYNFEPAGSTPLT-FTVKSAALKEAIDDLEWPGSSIQIKLQ 181
++ T+ P+ + D++F + + ++S L+EA +L+ +QI +
Sbjct: 125 GGVVTVCKINTQEPEE-TLDFDF--CSTNVINKIILQSEGLREAFSELDMTSEVLQITMS 181
Query: 182 PVPPSVSFKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCV 239
P P G+ G +D Y ++DL+ +FHC++ RYK L+ +T L C
Sbjct: 182 PDKPYFRLSTFGNAGSSHLD--YPKDSDLMESFHCNQTQVNRYKISLLKPSTKALVLSCK 239
Query: 240 IK---HNRG 245
+ NRG
Sbjct: 240 VSIRTDNRG 248
Score = 39 (18.8 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 259 EDGQICFVEYYCCPDEE 275
>UNIPROTKB|E1BB72 [details] [associations]
symbol:RAD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144
PRINTS:PR01245 PRINTS:PR01246 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 KO:K02830
PANTHER:PTHR10870 CTD:5810 OMA:CKVSVRT GeneTree:ENSGT00500000044913
EMBL:DAAA02050661 IPI:IPI00697671 RefSeq:NP_001179419.1
UniGene:Bt.22659 Ensembl:ENSBTAT00000025568 GeneID:518502
KEGG:bta:518502 NextBio:20872669 Uniprot:E1BB72
Length = 279
Score = 206 (77.6 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 63/242 (26%), Positives = 114/242 (47%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q +F +
Sbjct: 16 LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFR 73
Query: 73 YSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F + PG + + + Y G L++ ++
Sbjct: 74 VQEES-VTFRINLTVLLDCLSIFGSSPVPGTFTALRMCYQGYGYPLML-FLEEGGVVTVC 131
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLT-FTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVS 188
++ T+ P+ + D++F + + ++S L+EA +L+ +QI + P P
Sbjct: 132 KINTQEPEE-TLDFDF--CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFR 188
Query: 189 FKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HN 243
G+ G +D Y ++DL+ FHC+ RYK L+ +T L C + N
Sbjct: 189 LSTFGNAGSSHLD--YPKDSDLMELFHCNETQVNRYKISLLKPSTKALVLSCKVSIRTDN 246
Query: 244 RG 245
RG
Sbjct: 247 RG 248
Score = 39 (18.8 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 259 EDGQICFVEYYCCPDEE 275
>UNIPROTKB|E2QYH8 [details] [associations]
symbol:RAD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR003011 InterPro:IPR003021 Pfam:PF02144
PRINTS:PR01245 PRINTS:PR01246 GO:GO:0005634 GO:GO:0000077
GO:GO:0006281 GO:GO:0008408 GO:GO:0071479 KO:K02830
PANTHER:PTHR10870 CTD:5810 OMA:CKVSVRT GeneTree:ENSGT00500000044913
EMBL:AAEX03003179 RefSeq:XP_536505.3 Ensembl:ENSCAFT00000029851
GeneID:479366 KEGG:cfa:479366 Uniprot:E2QYH8
Length = 281
Score = 195 (73.7 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 62/242 (25%), Positives = 115/242 (47%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q +F +
Sbjct: 16 LVASLDNVRHLSTILKAIHFRDH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFI 73
Query: 73 YSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F + PG + + + Y G L++ ++
Sbjct: 74 VQEES-VTFRINLTILLDCLSIFGSSPMPGTLTALRMCYQGYGYPLML-FLEEGGVVTVC 131
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLT-FTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVS 188
++ T+ P+ + D++F + + ++S L+EA +L+ +QI + P P
Sbjct: 132 KINTQEPEE-TLDFDF--CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPNKPYFR 188
Query: 189 FKGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIK---HN 243
G+ G +D Y ++DL+ +F C++ RYK L+ +T L C + N
Sbjct: 189 LSTFGNAGSSHLD--YPKDSDLMESFQCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDN 246
Query: 244 RG 245
RG
Sbjct: 247 RG 248
Score = 39 (18.8 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 281 QPSQIAYIEFFVKPEED 297
+ QI ++E++ P+E+
Sbjct: 259 EDGQICFVEYYCCPDEE 275
>FB|FBgn0026778 [details] [associations]
symbol:Rad1 "Radiation insensitive 1" species:7227
"Drosophila melanogaster" [GO:0004527 "exonuclease activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS;NAS]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0000077 "DNA
damage checkpoint" evidence=IEA] [GO:0030896 "checkpoint clamp
complex" evidence=IDA] InterPro:IPR003011 InterPro:IPR003021
Pfam:PF02144 PRINTS:PR01245 PRINTS:PR01246 GO:GO:0000077
EMBL:AE014134 GO:GO:0006281 GO:GO:0030896 GO:GO:0008853 KO:K02830
PANTHER:PTHR10870 CTD:5810 GeneTree:ENSGT00500000044913
EMBL:AF124501 EMBL:BT024410 RefSeq:NP_477440.1 UniGene:Dm.3219
SMR:Q9VQD4 STRING:Q9VQD4 EnsemblMetazoa:FBtr0077747 GeneID:33440
KEGG:dme:Dmel_CG3240 UCSC:CG3240-RA FlyBase:FBgn0026778
eggNOG:NOG318373 InParanoid:Q9VQD4 OMA:TIYEFLS OrthoDB:EOG47PVNQ
GenomeRNAi:33440 NextBio:783585 Uniprot:Q9VQD4
Length = 274
Score = 152 (58.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 49/221 (22%), Positives = 105/221 (47%)
Query: 14 VCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEY 73
V ++++++ + A+ ++ + + ++++SE G+ + VE+ +QA +++ F+ E+
Sbjct: 15 VARVEHIKTFIQAIKSICFNDY--GMVQVSEDGLRITVEQGKSIQATLFMPPGAFM--EF 70
Query: 74 SAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRT 133
Q FGV + + ++CL+ F + S + R G +++++ D D ++T
Sbjct: 71 RVQDFQCFGVKMNVLSECLSLFGSADCSLRMMYRDKGDPLKIILYPHDDDDVSTECAIKT 130
Query: 134 RIPDM-ISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGE 192
D I +D N + + F V+ L + ++LE + P P FK
Sbjct: 131 MDCDEPIDYDQNLKDPDLNVI-F-VRGPNLSKVFNELEKSAEEFEFVTSPNRPH--FKIT 186
Query: 193 GHGDLQIDFMYYV--NTDLLIAFHCDREVSYRYKYKFLRAT 231
G +Q F V + +++ F+C + V RYK + +R T
Sbjct: 187 TVGIMQAVFSVEVAKTSPMMMMFNCKQTVVARYKSQQIRMT 227
>DICTYBASE|DDB_G0269378 [details] [associations]
symbol:rad1 "checkpoint clamp complex protein"
species:44689 "Dictyostelium discoideum" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030896
"checkpoint clamp complex" evidence=ISS] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISS] [GO:0000077 "DNA damage
checkpoint" evidence=ISS] [GO:0000076 "DNA replication checkpoint"
evidence=ISS] InterPro:IPR003021 Pfam:PF02144 PRINTS:PR01245
dictyBase:DDB_G0269378 GO:GO:0000077 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006281 GO:GO:0008408 GO:GO:0000076
GO:GO:0030896 KO:K02830 PANTHER:PTHR10870 eggNOG:NOG324428
RefSeq:XP_645919.1 ProteinModelPortal:Q55E62
EnsemblProtists:DDB0233003 GeneID:8616860 KEGG:ddi:DDB_G0269378
InParanoid:Q55E62 OMA:VETHCSI Uniprot:Q55E62
Length = 449
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 55/257 (21%), Positives = 110/257 (42%)
Query: 34 RHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSA---QGRPR---------- 80
++Q A+ +++E+ + IVEE Q + F Y ++A QG
Sbjct: 140 QNQFAICKIAENALTFIVEEGKHFQGLAGFKNTFFKEYNFNASPQQGASTADQQQQQQTL 199
Query: 81 -FGVSLGLFADCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPD 137
F ++L + DCL F +S ++ Y G LL++ + + ++T D
Sbjct: 200 LFKINLSMLLDCLTIFGNSSFTS-VQFLYKGYGSPFILLLEEIGG-GVETHCSIKTMDAD 257
Query: 138 MISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEGH-GD 196
I +++ S L F ++S L EA +L++ +S+ I L P P G G
Sbjct: 258 EIL-EFDLLTPVSNKL-F-MESENLLEAFGELDYTSNSLNILLTPEAPFFRLSTNGQMGS 314
Query: 197 LQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCV--IKHNRGSKLIIGRGG 254
++D+ + D +H D ++ Y + S + C+ + ++ +++ + +GG
Sbjct: 315 FRMDYCKKKSADDTFEYH-DLQIPIEYSFPL-----SLIKPCIKALSLSKKTRISLTQGG 368
Query: 255 MLKVQHLVSVARTSNQH 271
+L H+++ QH
Sbjct: 369 LLSFHHIITTG--PQQH 383
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 302 302 0.00097 115 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 615 (65 KB)
Total size of DFA: 224 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.22u 0.11s 23.33t Elapsed: 00:00:01
Total cpu time: 23.22u 0.11s 23.33t Elapsed: 00:00:01
Start: Sat May 11 05:55:07 2013 End: Sat May 11 05:55:08 2013