BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022104
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G65|B Chain B, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
pdb|3GGR|C Chain C, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 282
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/290 (23%), Positives = 135/290 (46%), Gaps = 35/290 (12%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q +F ++
Sbjct: 17 LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFK 74
Query: 73 YSAQGRPRFGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F + PG + + + Y G L++ ++
Sbjct: 75 VQEES-VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLML-FLEEGGVVTVC 132
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSF 189
++ T+ P+ + D++F + + ++S L+EA +L+ +QI + P P
Sbjct: 133 KINTQEPEE-TLDFDF-CSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRL 190
Query: 190 KGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIKHNRGSK 247
G+ G +D Y ++DL+ AFHC++ RYK L+ +T L C + ++
Sbjct: 191 STFGNAGSSHLD--YPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNR 248
Query: 248 LIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297
G L +Q+++ + QI ++E++ P+E+
Sbjct: 249 ------GFLSLQYMIR----------------NEDGQICFVEYYCCPDEE 276
>pdb|3A1J|C Chain C, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 263
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 131/289 (45%), Gaps = 35/289 (12%)
Query: 13 LVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYE 72
LV LDNV+ L L A+ ++ H A +++GI + VE C+QA ++Q +F ++
Sbjct: 5 LVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFK 62
Query: 73 YSAQGRPRFGVSLGLFADCLNTF-SAPGHSSLIEIR--YPGPDMQLLVKSVDSPDACIYA 129
+ F ++L + DCL+ F S+P +L +R Y G L + ++
Sbjct: 63 VQEES-VTFRINLTVLLDCLSIFGSSPXPGTLTALRXCYQGYGYPLXL-FLEEGGVVTVC 120
Query: 130 EVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSF 189
++ T+ P+ + D++F + + ++S L+EA +L+ +QI P P
Sbjct: 121 KINTQEPEE-TLDFDF-CSTNVINKIILQSEGLREAFSELDXTSEVLQITXSPDKPYFRL 178
Query: 190 KGEGH-GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP-GCVIKHNRGSK 247
G+ G +D Y ++DL AFHC++ RYK L+ +T L C + ++
Sbjct: 179 STFGNAGSSHLD--YPKDSDLXEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNR 236
Query: 248 LIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296
G L +Q+ + + QI ++E++ P+E
Sbjct: 237 ------GFLSLQYXIR----------------NEDGQICFVEYYCCPDE 263
>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
With An Mkk5 Binding Fragment
pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
Length = 442
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 27/181 (14%)
Query: 29 AVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQ--------GRPR 80
A RW R + ++ L E+ + + GC+ ++ +R+LF Y Q G P
Sbjct: 225 ATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPS 284
Query: 81 FGVSLGLFADCLNTFS---APGHSSLIEIRYPGPDMQ---LLVKSVD-SPDACIYAEVRT 133
V + A+ + + P E YPG D Q LL + + P A I A
Sbjct: 285 PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAAL 344
Query: 134 RIPDMISW-DYNFEPAGSTPLTFTVKSAAL-----KEA----IDDLEWPGSSI--QIKLQ 181
R P + + D + EP + P F AL KEA I+D I QI+ Q
Sbjct: 345 RHPFLAKYHDPDDEPDCAPPFDFAFDREALTRERIKEAIVAEIEDFHARREGIRQQIRFQ 404
Query: 182 P 182
P
Sbjct: 405 P 405
>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
Length = 398
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 21/159 (13%)
Query: 29 AVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQ--------GRPR 80
A RW R + ++ L E+ + + GC+ ++ +R+LF Y Q G P
Sbjct: 224 ATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPS 283
Query: 81 FGVSLGLFADCLNTFSA---PGHSSLIEIRYPGPDMQ---LLVKSVD-SPDACIYAEVRT 133
V + A+ + + P E YPG D Q LL + + P A I A
Sbjct: 284 PAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAAL 343
Query: 134 RIPDMISW-DYNFEPAGSTPLTFTVKSAAL-----KEAI 166
R P + + D + EP + P F AL KEAI
Sbjct: 344 RHPFLAKYHDPDDEPDCAPPFDFAFDREALTRERIKEAI 382
>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7
pdb|2B9I|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Msg5
pdb|2B9J|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Far1
pdb|2F49|A Chain A, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2F49|B Chain B, Crystal Structure Of Fus3 In Complex With A Ste5 Peptide
pdb|2FA2|A Chain A, Crystal Structure Of Fus3 Without A Peptide From Ste5
pdb|2FA2|B Chain B, Crystal Structure Of Fus3 Without A Peptide From Ste5
Length = 353
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 22 GLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRF 81
G+V+ A RW R + ++ +++ + V GC+ A+++L+R +F +Y Q F
Sbjct: 178 GMVE-FVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIF 236
Query: 82 GV 83
G+
Sbjct: 237 GI 238
>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182
Length = 353
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 29 AVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGV 83
A RW R + ++ +++ + V GC+ A+++L+R +F +Y Q FG+
Sbjct: 184 ATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGI 238
>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3
Length = 353
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 29 AVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGV 83
A RW R + ++ +++ + V GC+ A+++L+R +F +Y Q FG+
Sbjct: 184 ATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGI 238
>pdb|1YHQ|H Chain H, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|H Chain H, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|H Chain H, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|H Chain H, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|H Chain H, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|H Chain H, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|H Chain H, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CC2|H Chain H, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|H Chain H, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|H Chain H, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|H Chain H, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|H Chain H, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|H Chain H, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|H Chain H, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|3G4S|H Chain H, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|H Chain H, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|H Chain H, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|4ADX|H Chain H, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 177
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 210 LIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII 250
L +C+ E + K F RA P C IK RG +L+I
Sbjct: 136 LFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEELLI 176
>pdb|1ZGL|M Chain M, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|Q Chain Q, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|S Chain S, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|U Chain U, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
Length = 209
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 94 TFSAPGHSSLI-EIRYPGPDMQLLVKSVDSPD 124
T++A G+ SL ++YPG +QLL+K+ + D
Sbjct: 24 TYTATGYPSLFWYVQYPGEGLQLLLKATKADD 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,200,555
Number of Sequences: 62578
Number of extensions: 377268
Number of successful extensions: 752
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 10
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)