Query 022104
Match_columns 302
No_of_seqs 121 out of 388
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02144 Rad1: Repair protein 100.0 1.2E-51 2.7E-56 379.7 27.9 237 12-262 1-275 (275)
2 KOG1636 DNA polymerase delta p 100.0 1.2E-50 2.6E-55 350.3 19.7 250 12-301 1-260 (260)
3 TIGR00590 pcna proliferating c 100.0 3.7E-48 8E-53 353.8 31.1 247 12-300 1-259 (259)
4 PLN00057 proliferating cell nu 100.0 3.5E-47 7.7E-52 347.9 31.4 249 12-300 1-259 (263)
5 PTZ00113 proliferating cell nu 100.0 8.6E-45 1.9E-49 332.7 31.7 259 12-301 1-272 (275)
6 PTZ00483 proliferating cell nu 100.0 5.5E-44 1.2E-48 325.9 30.3 251 12-298 1-264 (264)
7 PHA03383 PCNA-like protein; Pr 100.0 1.5E-43 3.2E-48 323.1 30.4 249 6-296 1-261 (262)
8 KOG3194 Checkpoint 9-1-1 compl 100.0 2.6E-44 5.7E-49 315.6 12.5 260 8-300 9-276 (279)
9 PRK01115 DNA polymerase slidin 100.0 9.5E-30 2.1E-34 230.5 29.7 241 12-297 1-247 (247)
10 cd00577 PCNA Proliferating Cel 100.0 1.8E-29 3.9E-34 227.2 27.9 240 16-297 2-248 (248)
11 PF02747 PCNA_C: Proliferating 99.9 3.6E-21 7.9E-26 158.0 15.8 117 150-295 6-128 (128)
12 PF00705 PCNA_N: Proliferating 99.8 3.2E-20 7E-25 152.1 14.7 118 12-137 1-124 (127)
13 COG0592 DnaN DNA polymerase sl 99.4 1.2E-13 2.6E-18 132.3 7.1 243 18-298 69-325 (364)
14 PF04139 Rad9: Rad9; InterPro 99.2 9.6E-09 2.1E-13 93.6 21.8 219 23-261 1-238 (252)
15 PF04005 Hus1: Hus1-like prote 99.0 9.4E-07 2E-11 82.4 26.9 241 12-263 2-279 (292)
16 cd00140 beta_clamp Beta clamp 98.9 3.7E-06 7.9E-11 79.9 27.3 204 18-260 129-351 (365)
17 PRK05643 DNA polymerase III su 98.5 6.9E-05 1.5E-09 71.6 25.5 203 18-260 131-352 (367)
18 smart00480 POL3Bc DNA polymera 98.3 0.0002 4.4E-09 68.0 22.1 202 18-259 113-333 (345)
19 PRK14945 DNA polymerase III su 98.2 0.00044 9.6E-09 66.2 21.7 201 17-259 126-346 (362)
20 PRK14940 DNA polymerase III su 98.1 0.0029 6.4E-08 60.8 25.1 202 18-259 130-350 (367)
21 KOG3999 Checkpoint 9-1-1 compl 98.0 0.0015 3.3E-08 59.1 19.0 239 12-263 2-268 (284)
22 TIGR00663 dnan DNA polymerase 97.9 0.014 3.1E-07 55.7 25.3 201 18-258 129-350 (367)
23 PRK14942 DNA polymerase III su 97.8 0.017 3.6E-07 55.8 25.3 201 18-258 137-356 (373)
24 PRK06673 DNA polymerase III su 97.8 0.0065 1.4E-07 58.6 22.2 204 18-259 136-359 (376)
25 PRK14944 DNA polymerase III su 97.8 0.015 3.4E-07 56.0 24.6 203 18-258 133-358 (375)
26 PRK07761 DNA polymerase III su 97.8 0.022 4.9E-07 54.8 25.4 205 17-258 126-351 (376)
27 KOG2810 Checkpoint 9-1-1 compl 97.6 0.00022 4.7E-09 68.0 8.7 204 16-231 6-226 (394)
28 PRK14947 DNA polymerase III su 97.5 0.051 1.1E-06 52.6 23.8 206 18-259 130-357 (384)
29 PRK14941 DNA polymerase III su 97.5 0.082 1.8E-06 51.0 24.8 203 18-259 133-353 (374)
30 PRK14943 DNA polymerase III su 97.4 0.092 2E-06 50.4 24.2 209 18-259 129-359 (374)
31 PF02768 DNA_pol3_beta_3: DNA 97.3 0.0055 1.2E-07 49.3 12.0 91 150-259 7-106 (121)
32 PF00705 PCNA_N: Proliferating 97.1 0.032 6.9E-07 45.6 14.6 98 154-264 3-105 (127)
33 PRK01115 DNA polymerase slidin 97.0 0.014 2.9E-07 52.7 12.8 100 10-118 129-231 (247)
34 cd00140 beta_clamp Beta clamp 97.0 0.099 2.1E-06 49.5 18.8 166 38-236 33-208 (365)
35 PRK14946 DNA polymerase III su 96.6 0.7 1.5E-05 44.5 21.6 199 18-257 130-348 (366)
36 COG0592 DnaN DNA polymerase sl 95.8 2 4.4E-05 41.3 21.6 200 18-250 130-336 (364)
37 cd00577 PCNA Proliferating Cel 95.7 0.29 6.4E-06 43.5 13.1 92 158-262 5-101 (248)
38 PF02747 PCNA_C: Proliferating 95.5 0.35 7.6E-06 39.4 11.7 96 19-121 14-117 (128)
39 TIGR00590 pcna proliferating c 95.4 0.26 5.6E-06 45.2 11.8 95 154-261 3-104 (259)
40 PLN00057 proliferating cell nu 95.4 0.46 1E-05 43.6 13.4 84 154-250 3-90 (263)
41 PF04139 Rad9: Rad9; InterPro 95.3 0.19 4.1E-06 45.6 10.5 109 18-133 135-251 (252)
42 PTZ00113 proliferating cell nu 95.3 0.45 9.7E-06 44.1 13.0 97 154-263 3-104 (275)
43 PHA03383 PCNA-like protein; Pr 95.1 0.7 1.5E-05 42.5 13.7 94 154-260 9-110 (262)
44 PTZ00483 proliferating cell nu 95.1 0.32 7E-06 44.8 11.5 84 154-250 3-89 (264)
45 smart00480 POL3Bc DNA polymera 94.7 4 8.7E-05 38.6 19.6 163 39-236 18-191 (345)
46 PRK14945 DNA polymerase III su 94.3 5.1 0.00011 38.2 18.3 162 38-236 33-204 (362)
47 PRK05643 DNA polymerase III su 93.7 6.5 0.00014 37.4 19.8 166 38-236 33-210 (367)
48 PRK07761 DNA polymerase III su 92.5 10 0.00022 36.3 19.1 163 38-236 33-207 (376)
49 PF02768 DNA_pol3_beta_3: DNA 92.2 1.3 2.8E-05 35.3 8.8 90 19-119 15-107 (121)
50 TIGR00663 dnan DNA polymerase 90.3 17 0.00037 34.6 17.4 163 38-236 33-208 (367)
51 PRK14943 DNA polymerase III su 90.1 18 0.00039 34.6 19.4 131 38-193 33-172 (374)
52 PRK14947 DNA polymerase III su 87.7 9.8 0.00021 36.8 12.3 111 38-170 33-143 (384)
53 PRK14940 DNA polymerase III su 85.6 35 0.00075 32.7 20.0 112 38-171 33-144 (367)
54 PRK14942 DNA polymerase III su 83.0 22 0.00047 34.3 12.2 116 38-170 33-150 (373)
55 PRK14946 DNA polymerase III su 81.3 24 0.00052 33.9 11.8 111 38-170 32-143 (366)
56 PRK06673 DNA polymerase III su 80.7 56 0.0012 31.5 14.8 117 38-170 33-149 (376)
57 PRK14944 DNA polymerase III su 77.7 47 0.001 32.0 12.5 114 38-170 33-146 (375)
58 PF00712 DNA_pol3_beta: DNA po 76.4 19 0.00042 28.5 8.0 83 37-138 32-115 (120)
59 PRK14941 DNA polymerase III su 76.0 76 0.0017 30.4 21.3 165 38-235 33-211 (374)
60 PF02144 Rad1: Repair protein 74.4 71 0.0015 29.4 12.6 97 158-261 8-137 (275)
61 KOG1636 DNA polymerase delta p 66.5 29 0.00062 31.3 7.3 92 160-264 10-105 (260)
62 PF02767 DNA_pol3_beta_2: DNA 65.3 64 0.0014 25.2 9.7 88 20-117 4-100 (116)
63 PF04005 Hus1: Hus1-like prote 62.8 1.3E+02 0.0028 27.9 11.5 105 85-195 10-117 (292)
64 PHA02545 45 sliding clamp; Pro 53.6 1.7E+02 0.0037 26.3 16.3 125 42-192 23-152 (223)
65 PF00712 DNA_pol3_beta: DNA po 41.2 1.7E+02 0.0038 22.9 11.3 80 153-250 1-90 (120)
66 PF02767 DNA_pol3_beta_2: DNA 41.1 92 0.002 24.3 5.9 39 153-193 64-102 (116)
67 KOG3999 Checkpoint 9-1-1 compl 37.5 3.4E+02 0.0074 25.2 11.8 173 85-274 13-210 (284)
68 cd01274 AIDA-1b AIDA-1b Phosph 32.6 1.1E+02 0.0024 24.8 5.2 31 34-64 39-69 (127)
69 PF01203 T2SN: Type II secreti 26.4 4.4E+02 0.0096 23.1 8.4 68 38-111 147-220 (221)
70 cd01268 Numb Numb Phosphotyros 21.0 1.6E+02 0.0034 24.4 4.1 43 23-65 35-79 (138)
No 1
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=100.00 E-value=1.2e-51 Score=379.70 Aligned_cols=237 Identities=27% Similarity=0.567 Sum_probs=195.6
Q ss_pred eEEEEECChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeC-----------CCCcce
Q 022104 12 DLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYS-----------AQGRPR 80 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~-----------~~~~~~ 80 (302)
+|+|++.+++.|.++|+||.|++. |++.|+++||+|+||++|++|+++||++++|++|+++ ++..++
T Consensus 1 ~f~A~~~~~~~l~~lL~~I~~~~~--a~v~is~~Gi~~~vE~~~~~qa~a~l~k~LF~~Y~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PF02144_consen 1 IFSASTSNVRHLYQLLKCIAFKNK--ATVEISEDGIKFTVEDSKSIQASAFLDKSLFSEYTFNPPPDADDDDEEEEDEVS 78 (275)
T ss_dssp -EEEEES-THHHHHHHHTT-SSSE--EEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEE------------SSS-EE
T ss_pred CeEEEECCHHHHHHHHHhcccCCe--EEEEEcCCEEEEEEECCcEEEEEEEEChhhceEEEEeccccccccccCCCCceE
Confidence 599999999999999999999887 9999999999999999999999999999999999991 123699
Q ss_pred EEEEchhHHHHHHhCCCCCCc-------------------eEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCc
Q 022104 81 FGVSLGLFADCLNTFSAPGHS-------------------SLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMI 139 (302)
Q Consensus 81 fgInL~~L~~~L~~f~~~~~~-------------------~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~ 139 (302)
|+|||+.|++||++||.++.. ++|+|+|+|+ ||.|+||++|+.++| +|+|++++.+
T Consensus 79 F~I~L~~LlecL~ifg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsY~g~G~pL~l~led~gv~t~c---~i~T~~~~~~ 155 (275)
T PF02144_consen 79 FGINLSALLECLNIFGSSDSSSSSSSSGGDPSRNNASGEPTSCRLSYPGEGSPLVLILEDSGVTTTC---EIRTYEPDDP 155 (275)
T ss_dssp EEEEHHHHHHHHTTT-SS--TT-----------------EEEEEEEESSSCCEEEEEEEETTEEEEE---EEEEE-----
T ss_pred EEEEhHHHHHHHHHhCCCCCccccccccccccccccccCCceEEEEEcCCCCeEEEEEEeCCEEEEE---EEEEecCCcc
Confidence 999999999999999875532 3899999876 999999998877777 9999999865
Q ss_pred cCccccCCCCCccEEEEEehHHHHHHHHHhcCC-CCeEEEEEec-CCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeC
Q 022104 140 SWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP-GSSIQIKLQP-VPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCD 216 (302)
Q Consensus 140 ~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~-sd~v~i~~~p-~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~ 216 (302)
++++|+++ ++.++++|+|+||++|++||++. ++.++|.++| ++|+|+|+++| +|+++|+|| ++++++++|+|.
T Consensus 156 -~d~~f~~~-~~~~kiimks~~L~~al~eL~~~~~~~l~i~~s~~~~p~f~l~s~G~~G~s~v~fp--~~~~~le~f~~~ 231 (275)
T PF02144_consen 156 -LDFPFDRS-DVVNKIIMKSDWLRDALSELDWSNSEELTIYISPPDKPHFRLSSKGPLGSSKVDFP--NDSDVLETFECY 231 (275)
T ss_dssp -------TT-TEEEEEEEEHHHHHHHHHTT-TS-CSEEEEEE-S-SSSSEEEEEEETTEEEEEEE---TTSTSEEEEEE-
T ss_pred -cCcccccc-cceeEEEEEhHHHHHHHHHHhhccCCeEEEEEEeCCCCEEEEEEEcCCCeEEEEEC--CCCCceeEEEEe
Confidence 89999876 88999999999999999999999 8999999998 78999999999 999999999 889999999999
Q ss_pred ---cceEEEEehhhHHHhhccCCCCcccCCcceEEEEcCCceEEEEEEE
Q 022104 217 ---REVSYRYKYKFLRATTSNLPGCVIKHNRGSKLIIGRGGMLKVQHLV 262 (302)
Q Consensus 217 ---e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i~~~g~L~~q~~i 262 (302)
+++.++|++++|++++|||++| .+.+++++.+|+|++||||
T Consensus 232 ~~~~~~~~~Y~f~~i~~~~kAl~~s-----sKv~ir~d~~GlLs~Q~mi 275 (275)
T PF02144_consen 232 DGEEPVISRYKFSLIKKAMKALKIS-----SKVSIRIDENGLLSLQFMI 275 (275)
T ss_dssp ---S-EEEEEEHHHHCCHHHHHTTS-----SEEEEEEESSS-EEEEEEE
T ss_pred ccCceEEEEEeHHHHHHHHHHhhhc-----cEEEEEeCCCcEEEEEEeC
Confidence 6788889999999999999988 4444555999999999997
No 2
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-50 Score=350.26 Aligned_cols=250 Identities=16% Similarity=0.229 Sum_probs=219.9
Q ss_pred eEEEEECChHHHHHHhcccccce-eeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVRWKR-HQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~~~d-~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+||+.++..||+||++|+ + +++|+|+|+++||.+| ||.+||++|+++|.+++|+.|||+ + ++.+|+||..|.
T Consensus 1 M~Earl~q~sLlKkIlealk--dlV~~a~fdcse~GislQaMD~SHValvsl~l~s~~F~~yRCD-R-nl~lG~~L~sls 76 (260)
T KOG1636|consen 1 MLEARLVQASLLKKILEALK--DLVNDANFDCSETGISLQAMDSSHVALVSLLLRSEGFEKYRCD-R-NLSLGMNLKSLS 76 (260)
T ss_pred CchhHHHHHHHHHHHHHHHH--HHHhccCcccccCceEEEEecccceEEEEEEeeccccceeccC-C-ccccccCHHHHH
Confidence 79999999999999999999 5 4559999999999999 889999999999999999999999 4 799999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
|+|||+++. +.++|++++. .+.|.||+....+ ..++++++|+.|. |.--.|+++|.+.+.||+.+|.+++|
T Consensus 77 KiLkcanne---d~~Tlkaed~~dti~l~fe~~~~dk-i~dy~lKLmdiD~---ehl~IPe~dy~~~~~mPa~EF~ricr 149 (260)
T KOG1636|consen 77 KILKCANNE---DTVTLKAEDNPDTITLMFESPKQDK-IADYELKLMDIDS---EHLGIPEQDYDAVVTMPAGEFSRICR 149 (260)
T ss_pred HHHccccCC---CceEEEeecCCceEEEEEECCCCCc-ceeeEEEeeeccH---HHcCCCcccceEEEEccHHHHHHHHH
Confidence 999998863 5788888764 6889999888664 4689999999986 22222334666899999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCC
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHN 243 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~ 243 (302)
||...||+|.|.++ +.+++|++.| +|++.|.+... .+.+.-++++.++||..+|+++||+.++||.|||
T Consensus 150 dls~f~Dsv~I~~t--kegv~F~~~Gdig~asi~l~~~~~~d~~e~av~iE~~~pVtltfa~kYln~ftKatpLs----- 222 (260)
T KOG1636|consen 150 DLSTFSDSVVISAT--KEGVKFSAKGDIGTASITLSQCTAVDKPEEAVKIEMNEPVTLTFALKYLNQFTKATPLS----- 222 (260)
T ss_pred HHhhhcCeEEEEEe--cceeEEEecccccceeEEEccCCCCCCccceEEEEecCcchhhhHHHHHHHhhcccccc-----
Confidence 99999999999998 8899999999 99999999742 1123347899999999999999999999999999
Q ss_pred cceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCCC
Q 022104 244 RGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDTI 301 (302)
Q Consensus 244 ~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~~ 301 (302)
++|+| +.+.|+.++|.|+. .||++||+||+++|+|.
T Consensus 223 --~rV~lsls~~~P~~vey~i~~--------------------~g~lr~YLAPKieD~e~ 260 (260)
T KOG1636|consen 223 --DRVTLSLSSEVPVVVEYKIED--------------------MGHLRYYLAPKIEDEED 260 (260)
T ss_pred --ceEEEEecCCCcEEEEEeccc--------------------CceEEEEEccccCCCCC
Confidence 88887 88999999999963 69999999999998763
No 3
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.7e-48 Score=353.79 Aligned_cols=247 Identities=17% Similarity=0.243 Sum_probs=215.5
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|+++++||+ +.++ |+|.|+++||++| ||++|++|++++||+++|++|+|+. +.+||||++.|.
T Consensus 1 Mfea~~~~a~~~k~i~eai~~lv~e--~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~--~~~~gv~l~~l~ 76 (259)
T TIGR00590 1 MFEARLEQASLLKKILEAIKDLVND--ANFDCSESGISLQAMDSSHVSLVSLTLRSEGFDTYRCDR--NLALGVNLTSLS 76 (259)
T ss_pred CeEEEEccHHHHHHHHHHHHHHhce--eeEEECCCeEEEEEEcCCcEEEEEEEcCHHhCceEecCC--ceEEEEEHHHHH
Confidence 79999999999999999997 8888 9999999999999 9999999999999999999999984 589999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
|+||++++ + +.|+|+++++ .+.+.+++.+.. .-+.|.|++++++...++.+. . ++.++|+|+|++|+++|+
T Consensus 77 kiLk~~~~-~--d~l~l~~~~~~~~l~i~~~~~~~~-~~~~f~l~l~d~~~e~l~iP~--~-e~~~~v~m~s~~f~~~~k 149 (259)
T TIGR00590 77 KILKCANN-E--DIVTLKAEDNADTLILVFESPKQD-KISDYELKLMDIDVEHLGIPE--Q-EYDCVVEMPSSEFARICR 149 (259)
T ss_pred HHHhccCC-C--CEEEEEecCCCCEEEEEEEcCCCC-eEEEEEEEeeecccccCCCCC--C-ceeEEEEEEHHHHHHHHH
Confidence 99999986 2 6899998764 788888875433 334669999998653233322 2 577999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCC-----cEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTD-----LLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~-----~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
||+.+||+|+|.++ +++|+|+++| .|++++.++ +.++ ..+.++|++|++++|+++||+.++||.++|
T Consensus 150 dl~~v~d~v~i~~~--~~~~~f~~~Gd~g~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~y~l~YL~~~~Ka~~ls--- 222 (259)
T TIGR00590 150 DLSQFSDSVVISCT--KEGVKFSAKGDIGSGNVKLK--QTSDTDKEEEAVTIEMKEPVTLTFAIKYLNLFTKATPLS--- 222 (259)
T ss_pred HHHHcCCEEEEEEe--CCEEEEEEEecccEEEEEEe--cCCCCCCCcceEEEEecCceeeeeeHHHHHHhhhhccCC---
Confidence 99999999999997 6799999999 999999998 3333 347899999999999999999999999988
Q ss_pred CCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 242 HNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 242 ~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
++|.| ++++||+++|++.. .|+++|||||++++|+
T Consensus 223 ----~~V~l~~~~~~Pl~l~y~i~~--------------------~g~l~f~lAPrie~~~ 259 (259)
T TIGR00590 223 ----DRVTLSMSNDVPLVVEYKIKD--------------------MGFLRFFLAPKIEDEE 259 (259)
T ss_pred ----CeEEEEEcCCCCEEEEEEeCC--------------------CeEEEEEEcCccCCCC
Confidence 77777 99999999999952 4899999999999885
No 4
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=3.5e-47 Score=347.93 Aligned_cols=249 Identities=17% Similarity=0.240 Sum_probs=215.1
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|+++++||+ +.++ |+|.|+++||+++ ||++|++|++++||+++|++|+|+. +.+||||++.|.
T Consensus 1 Mf~a~~~~a~~~k~i~~ai~~lvde--~~~~~t~~Gi~~~amD~s~Valv~l~l~~~~F~eY~~d~--~~~~gv~l~~l~ 76 (263)
T PLN00057 1 MLEARLVQGSLLKKVLEAIKDLVSD--ANFDCSETGLSLQAMDSSHVALVALLLRADGFEHYRCDR--NLSMGINLANMS 76 (263)
T ss_pred CeEEEEcchHHHHHHHHHHHHHhhe--eEEEEcCCeEEEEEEcCCcEEEEEEEeChhcCeEEecCC--ceEEEEEHHHHH
Confidence 79999999999999999997 8888 9999999999999 9999999999999999999999984 589999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
|+||++++ + +.|+|++++. .+.+.+++.+.. +-+.|.|++++++...++.+. . ++.++|+|+|++|+++++
T Consensus 77 kiLk~~~~-~--d~l~l~~~~~~~~l~i~~~~~~~~-~~~~f~l~l~d~~~e~l~iP~--~-e~~~~v~m~s~~f~~~~k 149 (263)
T PLN00057 77 KILKCAGN-D--DIITIKADDGGDTVTFMFESPKQD-RISDFELKLMDIDSEHLGIPE--T-EYSAIVRMPSAEFQRICK 149 (263)
T ss_pred HHHhccCC-C--CEEEEEecCCCCEEEEEEEcCCCc-eEEEEEEEeeecCcccCCCCC--C-ceeEEEEEEHHHHHHHHH
Confidence 99999986 3 6899998764 688888865433 324669999998653222222 2 667999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCC---CCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCC
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVN---TDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHN 243 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~---s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~ 243 (302)
|++.+||.|+|.++ ++.|+|+++| .|++++.++...+ .+..+.++|+++++++|+++||++++||.++|
T Consensus 150 dl~~vsd~v~i~~~--~~~~~f~~~Gd~g~~~~~l~~~~~~~~~~~~~~i~~~e~~~~~y~l~YL~~~~Ka~~ls----- 222 (263)
T PLN00057 150 DLSSIGDTVVISVT--KEGVKFSTSGDIGTANIVLRQNTTVDKPEEKTVIEMQEPVSLTFALRYLNSFTKATPLS----- 222 (263)
T ss_pred HHHHcCCEEEEEEe--CCEEEEEEEecCcEEEEEEecCCCCCCccceEEEEecCceEEEEhHHHHHHhhccccCC-----
Confidence 99999999999997 6799999999 9999999984321 12357789999999999999999999999988
Q ss_pred cceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 244 RGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 244 ~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
++|.| ++++||.++|++.. .|+|+||||||+++|+
T Consensus 223 --~~V~i~~~~~~Pl~l~y~l~~--------------------~g~l~f~LAPri~~~~ 259 (263)
T PLN00057 223 --DTVTLSLSKELPVVVEYKIAE--------------------MGYIRYYLAPKIEEDE 259 (263)
T ss_pred --CeEEEEEcCCCCEEEEEEeCC--------------------CeEEEEEEcCCCCCcc
Confidence 77777 99999999999842 4899999999999876
No 5
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=8.6e-45 Score=332.74 Aligned_cols=259 Identities=13% Similarity=0.193 Sum_probs=218.0
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|++|++||+ +.++ ++|+|+++||++| ||++|+++++++||+++|++|+|+. +.++|||++.|.
T Consensus 1 Mfea~~~~a~~~K~i~eal~~lv~e--~~f~~t~~Gi~lqamD~shVaLv~l~l~~~~FeeY~cd~--~~~lGvn~~~l~ 76 (275)
T PTZ00113 1 MLEAKLNNASVLRRLFECIKDLVSD--GNIDFDETGLKLQALDGNHVALVHLKLHDSGFSHYRCDR--ERALGINIASVT 76 (275)
T ss_pred CeEEEeccHHHHHHHHHHHHHHhce--EEEEECCCeEEEEEECCCcEEEEEEEeCHHhCeEEecCC--CcEEEEEHHHHH
Confidence 79999999999999999999 7767 9999999999999 8899999999999999999999994 589999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCcc---CccccCCCCCccEEEEEehHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMIS---WDYNFEPAGSTPLTFTVKSAALKE 164 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~---ld~~f~~~~~~~~~v~m~s~~l~~ 164 (302)
|+||+.++ + +.++|.+.++ .+.+.++..+.. +-+.|.+++++.+... ++... ++.+++.|+|+.|++
T Consensus 77 KILk~~~~-~--D~l~l~~~~~~~~l~i~~~~~~~~-~~~~f~l~L~di~~e~~~iPe~~~----e~~~~v~m~s~~f~~ 148 (275)
T PTZ00113 77 KVFKLCSN-N--DSVLIQSEEDKDNINFVFENNVED-KVSSFSLKLMSIEQDALSIPENEE----GFDAEVTLSSKELTN 148 (275)
T ss_pred HHHHhCCC-C--CEEEEEEcCCCCEEEEEEEcCCCc-eEEEEEEEccccCccccCCCCCCC----CccEEEEEEHHHHHH
Confidence 99999876 2 6899987554 588889876643 4457799999987621 22211 466899999999999
Q ss_pred HHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 165 AIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 165 a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
+|+||+.+||+|+|.++ +++++|+++| .|++++.++.. ++.+.++++++++|++++|+++||+.++||.++|
T Consensus 149 i~rdl~~vgd~V~i~~~--~~~v~f~a~Gd~g~~~i~l~~~~~~~~~~~~~~~~v~~~~~~~ysl~YL~~f~Ka~~ls-- 224 (275)
T PTZ00113 149 ICRQMNEFSDTVKIEID--SNSIKFTTQGDLGDGEVVLKPRPPTSEDDCGVTIKVRKPIKQSYATKYLNMFAKSGCLS-- 224 (275)
T ss_pred HHHHHHHcCCEEEEEEe--CCEEEEEEeccCcEEEEEEecCCCCCCccceEEEEecCceeeEEhHHHHHHhhccccCC--
Confidence 99999999999999997 6799999999 99999999632 1245678999999999999999999999999998
Q ss_pred cCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCCC
Q 022104 241 KHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDTI 301 (302)
Q Consensus 241 ~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~~ 301 (302)
..|.| +++.||.++|.+....+ +|+ +.+..|+++|||||++++|+.
T Consensus 225 -----~~V~l~l~~d~Pl~ley~i~~~~~---------~~~-~~~~~G~l~fyLAPkie~~~~ 272 (275)
T PTZ00113 225 -----DVVTLGLSDNRPIEVKYEIKDTSP---------DAR-HTHKLGEVKFFLAPKMDDDMD 272 (275)
T ss_pred -----CeEEEEEcCCCCEEEEEEeccccc---------ccc-ccCCccEEEEEEcCccCcccc
Confidence 77777 99999999999952000 000 012468999999999998763
No 6
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=100.00 E-value=5.5e-44 Score=325.86 Aligned_cols=251 Identities=14% Similarity=0.197 Sum_probs=208.5
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++. ++.|+++++||+ +.++ |+|+|+++||++| ||++|++++++.||+++|++|+|++ +..+|||++.|.
T Consensus 1 Mfea~~~-a~~lK~i~eai~~lv~e--~~f~~~e~Gi~lqAmD~shVaLV~l~L~~~~Fe~Y~cd~--~~~lGinl~~l~ 75 (264)
T PTZ00483 1 MFECRLD-GMFLRRLFETLKDICTD--VSIDCSENGLKMQAMDNSHISLIHLNLAPDFFQLYRCDK--PCVLGLNISFML 75 (264)
T ss_pred CeEEEEe-HHHHHHHHHHHHHHhhe--eEEEECCCcEEEEEECCCcEEEEEEEcCHHhCeEEecCC--CeEEEEEHHHHH
Confidence 7999996 999999999999 6667 9999999999999 8899999999999999999999994 578999999999
Q ss_pred HHHHhCCCCCCceEEEEE-EcCC--C-eEEEEEECCCCC----eEEEEEEEecCCCCccCccccCCCCCccEEEEEehHH
Q 022104 90 DCLNTFSAPGHSSLIEIR-YPGP--D-MQLLVKSVDSPD----ACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAA 161 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~-y~g~--~-l~l~le~~~~~~----~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~ 161 (302)
|+||++++. +.++|+ ..+. . +.+.+.+..... +++.+.|++++++.. ++... ..++.++|.|+|+.
T Consensus 76 KiLk~a~~~---D~l~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~f~l~Lidi~~e--~l~iP-~~e~~~~v~m~s~~ 149 (264)
T PTZ00483 76 KILSVVKEK---STIYLFRGDNTEDPVLNIRIIEEEGQNSLESDSLEAQVKLINVQRE--HLEIP-QCEYHCKCVMNSKK 149 (264)
T ss_pred HHHhhcCCC---CEEEEEeccCCCCceEEEEEeccccccccccceEEEEEEccccCcc--cCCCC-CCCccEEEEEEHHH
Confidence 999999762 688887 4333 2 444344333221 566889999998863 22221 22667999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 162 LKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 162 l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
|+++|+|++.+||+|+|.++ +++++|+++| .|++++.++ ++.+. +.+++++|++++|+++||+.++||.++|
T Consensus 150 f~~i~kdl~~vsD~v~i~~~--~~~v~f~a~Gd~~~~~~~l~--~~~~~-v~~~~~~~v~~~fsl~YL~~f~Ka~~ls-- 222 (264)
T PTZ00483 150 FQEFAKYLHSIGDTVSISMK--KDEMRLETEGEGIKASKQFH--NDVGD-VRVTSTESLSQEFATRYLVLFSKATSLA-- 222 (264)
T ss_pred HHHHHHHHHHcCCEEEEEEE--CCEEEEEEeecCcEEEEEEc--cCCCc-eEEEecCcchheehHHHHHHhhccccCC--
Confidence 99999999999999999998 6799999999 999999997 44333 7788999999999999999999999998
Q ss_pred cCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCC
Q 022104 241 KHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDE 298 (302)
Q Consensus 241 ~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~ 298 (302)
..|+| +++.||.++|.+.... + +.+..|+++||||||+++
T Consensus 223 -----d~V~i~l~~~~Pl~ley~i~~~~-----------~--~~~~~G~l~fyLAPrie~ 264 (264)
T PTZ00483 223 -----DEVSINLSAGIPLSVKFNFKDPL-----------T--DLQDSSFINFYLAPNIEE 264 (264)
T ss_pred -----CeEEEEEcCCCCEEEEEEecccc-----------c--CCCCceEEEEEEccccCC
Confidence 77777 9999999999984100 0 012369999999999985
No 7
>PHA03383 PCNA-like protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=323.12 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=211.5
Q ss_pred CCCCCCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEE
Q 022104 6 MDAESPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGV 83 (302)
Q Consensus 6 ~~~~~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgI 83 (302)
|.+++.||+|++.+++.|+++++||+ +.++ |+|+|+++||++| ||++|++++++.||+++|++|+|++ +.++||
T Consensus 1 ~~~~~~mfe~~~~~a~~~K~iieai~~lv~e--~~f~~t~~Gi~lqamD~shVaLv~l~L~~~~F~~Y~~d~--~~~iGv 76 (262)
T PHA03383 1 MEDDNVLFHIRTIQGSVIKSLFDVLKEILHD--VNIFFRPTGVYISALDGAKVSLVHMKLDAESFEEYHCDQ--TYEIGV 76 (262)
T ss_pred CCCCcEEEEEEecchHHHHHHHHHHHHHhce--EEEEECCCcEEEEEECCCcEEEEEEEeCHHhCceEecCC--ceEEEE
Confidence 56789999999999999999999999 7767 9999999999999 8899999999999999999999994 578999
Q ss_pred EchhHHHHHHhCCCCCCceEEEEEE-cC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehH
Q 022104 84 SLGLFADCLNTFSAPGHSSLIEIRY-PG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSA 160 (302)
Q Consensus 84 nL~~L~~~L~~f~~~~~~~~l~l~y-~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~ 160 (302)
|++.|.|+||++++ + +.++|++ ++ +.+.+.+++.... .-..|.|++++.+.. ++.-. ..++.+++.|+|+
T Consensus 77 ~~~~l~KILk~a~~-~--D~l~l~~~~~~~~~l~i~~~~~~~~-~~~~f~l~Lidi~~e--~l~iP-~~e~~~~v~m~s~ 149 (262)
T PHA03383 77 NVSNMFKLLRTAGS-H--DSILFRYLKNSPHFLEITIQNFEKN-SLTKFQLKLIEIDSS--RIEVP-DVEFDTIIILPSN 149 (262)
T ss_pred EHHHHHHHHhccCC-C--CEEEEEecCCCCCEEEEEEEeCCCC-cEEEEEEEccccCcc--cCCCC-CCCccEEEEEEHH
Confidence 99999999999876 3 6899985 33 3688889875543 334679999998863 22221 2256799999999
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCcEEEE----Eee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccC
Q 022104 161 ALKEAIDDLEWPGSSIQIKLQPVPPSVSFK----GEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNL 235 (302)
Q Consensus 161 ~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s----~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl 235 (302)
.|+++|+|++.+||+|+|.++ +++++|+ ++| .|++++.+.. ...+.+...+ .+|++++|+++||+.++||.
T Consensus 150 ~f~~i~kdl~~igD~v~i~~~--~~~v~f~~~~~~~Gd~~~~~~~~~~-~~~~~v~~~~-~~~~~~~ysl~YL~~~~Ka~ 225 (262)
T PHA03383 150 YFQRLCRDMSNITDDLEITKK--GKEVSFRSDYTCVTDFASQETIIGD-SDNGQITCNE-SPDYTGKFSLKYLTSFTKAS 225 (262)
T ss_pred HHHHHHHHHHHcCCeEEEEEe--CCEEEEEEcccccccccceEEEecC-CCCCceEEec-CCceEEEEeHHHHHHhhccc
Confidence 999999999999999999997 6789999 999 9999999942 2333344433 67899999999999999999
Q ss_pred CCCcccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 236 PGCVIKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 236 ~lS~~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
++| ..|+| +++.||.++|.+.. .|+++||||||+
T Consensus 226 ~ls-------~~V~i~l~~d~Pl~ley~i~~--------------------~G~l~fyLAPri 261 (262)
T PHA03383 226 GMS-------SSVEIYLKESNPLILKYNVGS--------------------LGNLKFVIAPKV 261 (262)
T ss_pred cCC-------CeEEEEEcCCCCEEEEEEeCC--------------------CcEEEEEEcccc
Confidence 998 77777 99999999999842 489999999997
No 8
>KOG3194 consensus Checkpoint 9-1-1 complex, RAD1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=2.6e-44 Score=315.63 Aligned_cols=260 Identities=24% Similarity=0.418 Sum_probs=234.3
Q ss_pred CCCCeEEEEECChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 8 AESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 8 ~~~~~f~a~~~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
.+.+.+++++++++.+..+++++.|++. +++.++.+|++++++++|+.++++++.+++|.+|.+.++ .+.+..++..
T Consensus 9 ~~c~~~~~~~env~tl~~~lkav~~kd~--~t~ha~~dg~kftven~~~~~a~~fi~~~~f~sfkvree-sv~~~~~~~i 85 (279)
T KOG3194|consen 9 NKCSASTVHLENVTTLLSCLKAVGFKDD--VTIHADADGLKFTVENNHVIKAQLFISRELFMSFKVREE-SVDHMKLMVI 85 (279)
T ss_pred ccceeeeehhhhHHhHHHHHhhhccccc--eEEEEecCCcEEEEEcCeEeeehhhccHHHhcchhhhhh-hhhhhhhhee
Confidence 3578899999999999999999999988 999999999999999999999999999999999999865 6887777777
Q ss_pred HHHHHHhCCC---CCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHH
Q 022104 88 FADCLNTFSA---PGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAAL 162 (302)
Q Consensus 88 L~~~L~~f~~---~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l 162 (302)
..++|..|++ .+....|+++|+|+ |+.+.+|+.|..+.| .+.|++++.- +|++|... .+..|++|+|++|
T Consensus 86 s~~sl~~~~s~~m~~~~~~~kvsY~G~g~P~i~~vEd~G~vt~c---~~~tte~~kd-~D~n~~~t-~v~~kiilKse~L 160 (279)
T KOG3194|consen 86 SNSSLDSFSSMIMSDDLVECKVSYDGHGSPFILIVEDAGVVTEC---VELTTELEKD-LDFNFLET-NVIFKIILKSEGL 160 (279)
T ss_pred ehhhhhhhhccccCCCceEEEEEecCCCCceEEEEeccceEEEe---eecchhhhhc-cCccccch-hhHHHHHHhhHHH
Confidence 7788888754 23347999999986 999999998887777 8888888653 68888876 7888999999999
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 163 KEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 163 ~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
++|++|||..+..+.|.++|++|.|+|++.| +|+++|++| ++++.|++|+|.+++..+|+++.+++++||+.++
T Consensus 161 ~eAlkeLD~tsevl~It~s~dk~~F~L~tfG~lG~S~i~~P--s~s~~mEs~~~~~ev~~sy~fSli~~~tkAl~la--- 235 (279)
T KOG3194|consen 161 HEALKELDMTSEVLQITMSPDKPYFRLSTFGNLGSSHIDYP--SDSSLMESFQCFDEVIGSYDFSLIDKITKALKLA--- 235 (279)
T ss_pred HHHHHHhhhcceeEEEEecCCCcEEEEEEecccCcceecCC--CcHHHHHHhhhhhhhhceEeehhhHHHHHHHhhh---
Confidence 9999999999999999999999999999999 999999999 8899999999999999999999999999999987
Q ss_pred CCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 242 HNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 242 ~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
+||.+ +++|.|++|||+.. ++|..+||||+++|.++..+
T Consensus 236 ----sKv~lR~DerGvLS~qimi~~----------------~dg~itfiefc~vp~Dev~e 276 (279)
T KOG3194|consen 236 ----SKVLLRMDERGVLSVQIMIQT----------------DDGIITFIEFCMVPIDEVAE 276 (279)
T ss_pred ----heEEEEEcCCcEEEEEEEEec----------------CCceEEEEEEEEeecccccc
Confidence 88888 88999999999986 37889999999999766433
No 9
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=99.98 E-value=9.5e-30 Score=230.48 Aligned_cols=241 Identities=15% Similarity=0.263 Sum_probs=204.9
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|+++++||+ +.+. +.++++++||+++ +|..|.+++.+.++++.|++|+|.. +..+++++..|.
T Consensus 1 ~~~~~~~~~~~lk~i~~~i~~l~~~--v~~~~~~~~l~~~atD~~Rla~~~~~~~~~~f~~~~~~~--~~~~~v~l~~l~ 76 (247)
T PRK01115 1 MMKAVYPDAKDFKYIIDAISKLVDE--AKFKFTEDGIRLRALDPAKVAMVDLELPKEAFEEYEVDE--EEKIGVDLEDLK 76 (247)
T ss_pred CeEEEecchHHHHHHHHHHHHHhce--EEEEECCCcEEEEEECCccEEEEEEEeCHHhCccEecCC--CeEEEEEHHHHH
Confidence 79999999999999999998 8888 9999999999999 6778899999999999999999984 567999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
++|++++. + +.++|.+++ ..+.+.++. +..+. +.+++++.+-| +....+. ++.++++|++..|+++++
T Consensus 77 ~il~~~~~-~--~~v~i~~~~~~~~l~~~~~~-~~~~~---~~~~Lieg~~p--~~~v~p~-~~~~~i~~~~~~l~~~~~ 146 (247)
T PRK01115 77 KILKRAKK-G--DKLELELDEEENKLKITFGG-EKTRE---FSLPLLDVSSE--EPPEPNL-ELPVKAVILGDDLKDAIK 146 (247)
T ss_pred HHHhhCCC-C--CEEEEEEcCCCCEEEEEEec-CcEEE---EEEEeeccCCC--CCCCCCC-cccEEEEEEHHHHHHHHH
Confidence 99999864 2 579999954 567777764 32334 48999998875 4334333 677999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEeeceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceE
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEGHGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSK 247 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~ 247 (302)
++...++.|+|.++ ++.+.|++.|-|+++.+++ ..++.+++++++++++..|..+||..++||++.| ++
T Consensus 147 r~~~~~~~v~i~~~--~~~l~lsa~~~g~a~~~i~--~~~~~~~~~~g~e~~~i~fn~~YL~d~lk~~~~~-------~~ 215 (247)
T PRK01115 147 DAELVSDHIELEAD--EDKFYIEAEGEGEDEVELS--LDSGPLIELSVEEPAKSSYSLDYLKDMVKATSAS-------DE 215 (247)
T ss_pred HHHhcCCeEEEEEe--CCEEEEEEEeCCceEEEEe--cCCCceEEEEecCceeEEEhHHHHHHhhccccCC-------Ce
Confidence 99999999999998 6789999887788888998 5577888999988999999999999999999865 67
Q ss_pred EEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 248 LII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 248 V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
|.| +.++|+.+++.+.. .+.+.||++|+++
T Consensus 216 V~l~~~~~~P~~l~~~~~~--------------------~~~~~~~i~P~~~ 247 (247)
T PRK01115 216 VTIEFGSDMPLKLEFEIAG--------------------GGKVTYLLAPRIE 247 (247)
T ss_pred EEEEECCCCCEEEEEEeCC--------------------CeEEEEEEecccC
Confidence 777 67899999998753 3567899999975
No 10
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=99.97 E-value=1.8e-29 Score=227.20 Aligned_cols=240 Identities=22% Similarity=0.328 Sum_probs=200.9
Q ss_pred EECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEEcC-cEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHH
Q 022104 16 QLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVEET-GCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLN 93 (302)
Q Consensus 16 ~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd~s-~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~ 93 (302)
++.+++.|+++++++. +.+. +.++++++||++++.|+ +.+++.+.+++++|++|+|+. +..++|++..|.+||+
T Consensus 2 ~~~~~~~l~~~~~~l~~i~~~--v~~~~~~~gl~~~a~d~~r~~~~~~~l~~~~F~~y~~~~--~~~~~i~~k~l~~~lk 77 (248)
T cd00577 2 TLSNAKLLKKIVDALSKLVDE--ANFDITEDGISLQAMDSSHVALVSLFLPKELFEEYRCDE--EISLGVNLKSLLKILK 77 (248)
T ss_pred cccchHHHHHHHHHHHHHhcE--EeEEECCCceEEEEEcCCcEEEEEEEechhhCeEEecCC--ceEEEEEHHHHHHHHh
Confidence 4679999999999999 6666 99999999999996654 668999999999999999983 5899999999999999
Q ss_pred hCCCCCCceEEEEEEcCC-CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC
Q 022104 94 TFSAPGHSSLIEIRYPGP-DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP 172 (302)
Q Consensus 94 ~f~~~~~~~~l~l~y~g~-~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~ 172 (302)
++++ .+.++|.|++. ++.+.++..... .-..+.+++++.+.+ ++.+.+ .++.++++|++..|+++++++.+.
T Consensus 78 ~~~~---~~~v~i~~~~~~~l~i~~~~~~~~-~~~~~~~~li~~~~~--~~~~~~-~~~~~~i~i~~~~L~~~i~~~~~~ 150 (248)
T cd00577 78 CAGN---EDCVTLRADDEDPLKILFESSKGD-VTSEFSLKLMDIDSE--QLPIPE-LEYDATVTLPSDELKDIVRDLESI 150 (248)
T ss_pred hCCC---CCEEEEEecCCCeEEEEEEcCCCc-eEEEEEEEccccCcc--cCCCCC-CceeEEEEEEHHHHHHHHHHHHHc
Confidence 9975 25799999887 788888865311 123448888887764 555533 378899999999999999999999
Q ss_pred CCeEEEEEecCCCcEEEEEee-ceEE-EEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE
Q 022104 173 GSSIQIKLQPVPPSVSFKGEG-HGDL-QIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 173 sd~v~i~~~p~~~~~~~s~~G-~G~~-~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i 250 (302)
++.|+|.++ ++.+.|++.| .|.. ++.++ .+++.++++.+.++++..|.++||+.++||+++| ++|+|
T Consensus 151 ~~~i~i~~~--~~~l~lss~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~fn~~yL~~~l~~~~~s-------~~v~i 219 (248)
T cd00577 151 SDSVTISAS--KDGFKFSAEGELGGASVTLLP--KDSDLLVTIECSEPVSSTYSLKYLKDFTKAAPLS-------DKVTL 219 (248)
T ss_pred CCEEEEEEc--CCEEEEEEeecCCceEEEEec--CCCCceEEEEeCCceEEEEhHHHHHHHhhhcccC-------CeEEE
Confidence 999999998 5679999999 6655 55556 5667778899999999999999999999999866 66666
Q ss_pred --cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 251 --GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 251 --~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
+.+||+.+||++.. .++++||+||+++
T Consensus 220 ~~~~~~p~~i~~~~~~--------------------~~~~~f~lap~~~ 248 (248)
T cd00577 220 SFGSDGPLSLEFKIAD--------------------GGHLTFYLAPKIE 248 (248)
T ss_pred EEcCCCCEEEEEEcCC--------------------CcEEEEEEccccC
Confidence 77799999999842 5899999999874
No 11
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=99.87 E-value=3.6e-21 Score=158.04 Aligned_cols=117 Identities=22% Similarity=0.364 Sum_probs=102.4
Q ss_pred CccEEEEEehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CCCCcEEEEEeCcceEEEEeh
Q 022104 150 STPLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VNTDLLIAFHCDREVSYRYKY 225 (302)
Q Consensus 150 ~~~~~v~m~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~s~~l~~f~~~e~v~~~Y~l 225 (302)
++.++|.|+|..|+++|+||+.+||+|+|.++ ++.+.|+++| .|++++.+... .+.+.+..++|++++++.|++
T Consensus 6 e~~~~v~m~S~~f~~~~kdl~~v~d~v~i~~~--~~~~~f~~~Gd~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~fsl 83 (128)
T PF02747_consen 6 EYDATVTMPSSEFKKICKDLSSVGDTVTISAD--KDSVIFSAEGDIGSAEVEFKETESSEDDEELIEIEVKEPVSSSFSL 83 (128)
T ss_dssp S-SEEEEEEHHHHHHHHHHHHTTCSEEEEEEE--TTEEEEEEEESSEEEEEEEEEEEEETTCTCESEEEESSEEEEEEEH
T ss_pred cceEEEEEEHHHHHHHHHHHHhcCCEEEEEEe--CCEEEEEEEeccCcEEEEEeeccccccccccceeeeccceeeEEeH
Confidence 34589999999999999999999999999998 7899999999 99999998531 234567899999999999999
Q ss_pred hhHHHhhccCCCCcccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecC
Q 022104 226 KFLRATTSNLPGCVIKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPE 295 (302)
Q Consensus 226 ~yL~~~~KAl~lS~~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~ 295 (302)
+||+.++||.++| +.|+| +++.||+++|.+.. .|++.||+||+
T Consensus 84 ~YL~~~~Ka~~ls-------~~V~l~l~~~~Pl~l~f~~~~--------------------~g~l~f~LAPK 128 (128)
T PF02747_consen 84 DYLNDFSKAAPLS-------DEVTLELGEDMPLKLEFELAD--------------------GGSLKFYLAPK 128 (128)
T ss_dssp HHHHHHGGGGGTT-------SEEEEEEETTSEEEEEEEETT--------------------TEEEEEEE-BB
T ss_pred HHHHhhhccccCC-------ceEEEEEcCCCCEEEEEEeCC--------------------CeEEEEEEcCC
Confidence 9999999999988 66666 99999999999952 38999999997
No 12
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=99.85 E-value=3.2e-20 Score=152.10 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=100.0
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+|..|+++++||+ +.++ |+|.++++||+++ ||++|++++.+.||+++|++|+|+. +..+|||++.|.
T Consensus 1 Mfea~~~~a~~~K~i~eal~~lv~e--~~f~~~~~Gi~~~amD~s~Valv~l~l~~~~F~~Y~~d~--~~~igvnl~~l~ 76 (127)
T PF00705_consen 1 MFEAKFSDASLFKKIFEALKDLVDE--ANFEFTEDGISLQAMDPSHVALVDLELPSEAFEEYRCDK--ELSIGVNLSDLK 76 (127)
T ss_dssp SEEEEESSHHHHHHHHHHHTTTCSE--EEEEEESSEEEEEEE-TTSSEEEEEEEEGGGSSEEEESS--SEEEEEEHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHhhE--EEEEEccCCEEEEEECCCcEEEEEEEechhcceEEEcCC--CEEEEEEHHHHH
Confidence 79999999999999999999 7777 9999999999999 8999999999999999999999983 689999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEE--EEEecCCC
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYA--EVRTRIPD 137 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~--~i~t~e~d 137 (302)
++|++.++. ++++|+++++ .+.+.++..... ..+.+ .++.+|.|
T Consensus 77 kiLk~~~~~---D~l~l~~~~~~~~l~i~~~~~~~~-~~~~~~~~l~~id~d 124 (127)
T PF00705_consen 77 KILKRAKKD---DSLELESDEEPDKLNIVFENEKKG-RVREFSLKLMLIDID 124 (127)
T ss_dssp HHHTTSSTT---SEEEEEEESSSSEEEEEEEETTSS-EEEEEEEEEEEBEEE
T ss_pred HHHhhccCC---CEEEEEEeCCCCEEEEEEEcCCCC-eEEeeeeEEEEeccc
Confidence 999999862 6899999775 467788877654 44433 55545443
No 13
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.2e-13 Score=132.26 Aligned_cols=243 Identities=19% Similarity=0.205 Sum_probs=171.2
Q ss_pred CChHHHHHHhcccccceeeeEEEEEeCCccE-EEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCC
Q 022104 18 DNVQGLVDALSAVRWKRHQDAVIELSEHGII-LIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFS 96 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~-l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~ 96 (302)
..+|.|..+++.+. +. +.+.++.+|+. ..++++|+......+|++.|.+|.++.+ ...|+++.+.|.++|+...
T Consensus 69 v~~k~l~dii~~L~--de--~~~~~~~~~~~~~~i~~~~s~f~l~~lp~e~Fp~~~~~~~-~~~~~l~~~~Lk~ii~~~~ 143 (364)
T COG0592 69 VPAKKLLDIISKLP--DE--AVFLVTEDGISLLAVDSGKSAFVLLTLPAEDFPEYPVDEE-EVEFGLPTELLKKIIKRTK 143 (364)
T ss_pred EEhHHHHHHHHhCC--CC--ceEEEEecCCceEEEecCceEEEcCCCCHHHCCCCCCCCc-CceEEecHHHHHHHHhhee
Confidence 34566666666666 87 99999999999 5599999999999999999999999965 4789999999999999986
Q ss_pred CCCCceEEEEEEcCCCeEEEEEECCCCCeEEE--EEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHH---HHhc-
Q 022104 97 APGHSSLIEIRYPGPDMQLLVKSVDSPDACIY--AEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAI---DDLE- 170 (302)
Q Consensus 97 ~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~--~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~---~dL~- 170 (302)
.++. . ...+|.-..+.+.+++. ..+...- ..+...++..+ +..+ .+.+++|++.|+++. +|.+
T Consensus 144 fa~~-~-~e~~~~lngv~~~i~~~-~l~~vatd~~rla~~~~~~~--~~~~------~~~viIp~k~l~el~k~~~d~~~ 212 (364)
T COG0592 144 FADS-L-LETRYELNGVLLEIEGT-KLRLVATDGHRLAVEELEIP--ELEE------DASVIIPAKTLKELIKLLKDADV 212 (364)
T ss_pred eccc-c-hhhhhhcccEEEEEECC-EEEEEEECCceEEEEEeccc--cCCC------CccEEEEhhHHHHHHHhCCCCCe
Confidence 5431 1 33333333455555533 1111100 01221222211 1111 257899999999999 8888
Q ss_pred ---CCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCC---cEEEEEeCcceEEEEehhhHHHhhccCCCCcccCC
Q 022104 171 ---WPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTD---LLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHN 243 (302)
Q Consensus 171 ---~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~---~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~ 243 (302)
..++.+.+.+.. ...++-..+| ....+.-+| ++.+ .+...++.+.++..|.+.|++...|.+.++ .
T Consensus 213 ~~~~~sd~i~f~~~~-~~~~s~lieG~fpd~~~vip--~~~~~~~~l~~~el~~al~r~~~l~~~~~~~~~~~~~----~ 285 (364)
T COG0592 213 EIFLVSDQIRFKAGE-TILFSKLIEGEFPDYERVIP--KEFEKELTLDRLELKEALKRVYSLSYLKDRGKKLSLA----D 285 (364)
T ss_pred EEEEcCCeEEEEECC-EEEEEEEecccCCChhhcCC--CCCceEEEEeHHHHHHHHHHHHHHHhcccCceEEEee----C
Confidence 778889988762 2455556778 888888888 4444 334445667899999999999999998876 1
Q ss_pred cceEEEEcCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCC
Q 022104 244 RGSKLIIGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDE 298 (302)
Q Consensus 244 ~~~~V~i~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~ 298 (302)
..-+++.+.+-|.++++.+.. ++ .|..+.+.|+++|++|.
T Consensus 286 ~~v~i~~~~~~~g~~~eei~~-------------~~--~g~~~~I~fn~~ylld~ 325 (364)
T COG0592 286 GEVKLSLGNDEPGKAEEEIDV-------------GY--TGEELKIGFNLAYLLDV 325 (364)
T ss_pred CeEEEEecCCCccceEEEEEe-------------cc--CCceEEEEECHHHHHHH
Confidence 133444488999999999974 11 35679999999999884
No 14
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=99.16 E-value=9.6e-09 Score=93.57 Aligned_cols=219 Identities=15% Similarity=0.198 Sum_probs=139.8
Q ss_pred HHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeE--EeCCCCcceEEEEchhHHHHHHhCCCC
Q 022104 23 LVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRY--EYSAQGRPRFGVSLGLFADCLNTFSAP 98 (302)
Q Consensus 23 l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y--~~~~~~~~~fgInL~~L~~~L~~f~~~ 98 (302)
|.++|.|++ +.++ ..++++++||.++ +..++++.+.+.+.++.|++| .-+..+...+.|++..++.+++.....
T Consensus 1 f~ral~~Lskigee--l~ie~~~~~L~l~avNss~Sa~~~~~F~~~FF~~y~~~~~~~~~~~~~i~~K~~l~vfr~~~~~ 78 (252)
T PF04139_consen 1 FARALQCLSKIGEE--LYIEITEDGLSLRAVNSSRSAYAQFRFSKSFFDKYQADSDSQDSFSCKISMKSLLSVFRSLSTL 78 (252)
T ss_dssp HHHHHHHHHTT-SE--EEEEEETTEEEEEEE-TTSSEEEEEEETGGGSSEEE--SSSS----EEEEHHHHHHHHSSCTCC
T ss_pred CHHHHHHHHhhCCe--EEEEEcCCeEEEEEECccccEEEEEEEChHHhhhhcccCCCCCcEEEEEEchhhhhhhcccccc
Confidence 567888887 7777 9999999999999 889999999999999999999 333334577899999888777644321
Q ss_pred -CCceEEEEEEcCC--CeEEEEEEC-CCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCCC
Q 022104 99 -GHSSLIEIRYPGP--DMQLLVKSV-DSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGS 174 (302)
Q Consensus 99 -~~~~~l~l~y~g~--~l~l~le~~-~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~sd 174 (302)
.+-+.|.|+.+.. .+.+.+.-. |.. ..+.|...+.+.. ...|+.+ ...+++.+++..|++++.-....-+
T Consensus 79 ~~~Ve~c~i~i~~~~~~L~~~l~c~~gI~---Kt~~l~~~~~~~~--~a~~d~~-~~~n~l~~~~~~l~~~l~~f~~~~e 152 (252)
T PF04139_consen 79 EKNVESCEISIDNDESRLIFQLFCKNGII---KTYNLPYEECESL--QAVFDKE-SCPNYLVISPRLLKDLLDHFPSSTE 152 (252)
T ss_dssp HHCEEEEEEEE-TTSSEEEEEEEEGGGEE---EEEEEE-CE-----------GG-GSSEEEEEEHHHHHHHHTTS-TT--
T ss_pred ccceeEEEEEEcCCCcEEEEEEEeccceE---EEEEEEEEecccc--ccccchh-cCCceEEEChHHHHHHHhhcCCChh
Confidence 1346788888665 455554433 433 3457776666653 4445443 4578999999999999998876668
Q ss_pred eEEEEEecCCCcEEEEEee---ce---E--EEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcce
Q 022104 175 SIQIKLQPVPPSVSFKGEG---HG---D--LQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGS 246 (302)
Q Consensus 175 ~v~i~~~p~~~~~~~s~~G---~G---~--~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~ 246 (302)
.|++.+. +..+.|++.- .+ . +++.+. .+.++.+.+.++..-+|.++-+|.++.-... ...
T Consensus 153 eitl~~~--~~~v~~~s~~~~~~~~~~~l~t~v~i~----~~ef~~~~~~~~~~itF~lKefka~l~~ae~------~~~ 220 (252)
T PF04139_consen 153 EITLEVT--DDKVSFKSYTEEIQDSKQPLSTEVTIS----TEEFDEYNVQEDTDITFSLKEFKAILSFAES------LSL 220 (252)
T ss_dssp EEEEEEE--CTCEEEEEE-----SSS---EEEEEE-----GGGSSEEE--TT-EEEEEHHHHHHHHHHHHH------TTE
T ss_pred hEEEEec--CCEEEEEeecccccccccceEEEEEEe----hHhcceEEcCCCCEEEEEeHHHHHHHHHHHh------cCC
Confidence 8999888 4678777432 22 2 344453 3557899999999999999999987764321 125
Q ss_pred EEEE---cCCceEEEEEE
Q 022104 247 KLII---GRGGMLKVQHL 261 (302)
Q Consensus 247 ~V~i---~~~g~L~~q~~ 261 (302)
.|.+ ....|+.+.+.
T Consensus 221 ~i~~~f~~pG~Pi~~~~~ 238 (252)
T PF04139_consen 221 PISIYFDNPGRPILFELE 238 (252)
T ss_dssp EEEEEESSTTS-EEEEEE
T ss_pred cEEEEECCCCCcEEEEEC
Confidence 5666 55778876643
No 15
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=98.97 E-value=9.4e-07 Score=82.37 Aligned_cols=241 Identities=12% Similarity=0.129 Sum_probs=144.7
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEE--cCcEEEEEEEeccc-CceeEEeCC--CCcceEEEEc
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVE--ETGCLQAKVYLQRE-LFVRYEYSA--QGRPRFGVSL 85 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd--~s~~~~~~~~l~~~-~F~~Y~~~~--~~~~~fgInL 85 (302)
-|.|++.+.+.|++++.++. +.+. |.+.++++=+.|..- ++...|+-+.++.+ +|++|++.. +..+.|.+++
T Consensus 2 KFka~i~~~~~~~~~~~~~~kl~k~--~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~~y~i~s~~~N~I~le~~~ 79 (292)
T PF04005_consen 2 KFKATISDIKLFKKFVSTISKLGKR--CVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFSEYRIQSASENEIYLEVNI 79 (292)
T ss_dssp EEEEEEE-HHHHHHHHHHHHHH-SE--EEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-SEEEEE-SSSS-EEEEEEH
T ss_pred cceEEecCHHHHHHHHHHHHHhhCE--EEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCcccEEEeCCCCEEEEEEcH
Confidence 48999999999999999998 6556 999999999999954 78899999999999 999999862 1358899999
Q ss_pred hhHHHHHHhCCCCCCceEEEEEEcCC-C-eEEEEEECCC---CCeEEE-EEEEecCCCCccCccccCCCCCccEEEEEeh
Q 022104 86 GLFADCLNTFSAPGHSSLIEIRYPGP-D-MQLLVKSVDS---PDACIY-AEVRTRIPDMISWDYNFEPAGSTPLTFTVKS 159 (302)
Q Consensus 86 ~~L~~~L~~f~~~~~~~~l~l~y~g~-~-l~l~le~~~~---~~~~~~-~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s 159 (302)
+.|..+|+-+.++. ...++|.-.+. | |.+..+.... .+.+++ --++.+-+... .++.-.........+.||+
T Consensus 80 ~~L~raLrs~~~a~-~~~ikL~kk~~~p~L~~~~~~~~~~~~~~~v~hdiPV~vl~~~~~-~~~~eP~~~~~dv~i~LP~ 157 (292)
T PF04005_consen 80 DSLLRALRSADNAS-SVKIKLTKKGRMPCLSFEITGTSSSGRSRIVVHDIPVRVLPRREW-EELQEPMVPDPDVSIYLPP 157 (292)
T ss_dssp HHHHHHHCTCSSCS-EEEEEEE-S-SSSEEEEEEEE--SSST-EEEEEEEEBEE--GGGG-GGGS-------SEEEE-S-
T ss_pred HHHHHHHHhhccCc-eeEEehhhccCCcEEEEEEEeeccCCCccEEEEECCeEecCHHHH-HHhhhcccCCCCEEEECCC
Confidence 99999999997543 46777777754 4 5565554332 222222 23333322221 0111000002224577775
Q ss_pred H-HHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CC--C----------------CcEEEEEeC
Q 022104 160 A-ALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VN--T----------------DLLIAFHCD 216 (302)
Q Consensus 160 ~-~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~--s----------------~~l~~f~~~ 216 (302)
= .|+.++.-+...|+.++|.++. .+.|+|..+. ..+..+.|..- .. . +.-..-+-.
T Consensus 158 l~~l~~~veR~k~~s~~v~i~an~-~G~L~L~v~t~~~~v~t~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (292)
T PF04005_consen 158 LKQLRSIVERMKNLSDYVTISANM-NGELRLSVETDSVSVETEFRGLENPPLDPAELNTVDQLPSEDDSDSDQQEERDPE 236 (292)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEE-S-SS-EEEEEE-SSEEEEEEE-S------------------------SSSSS-----
T ss_pred HHHHHHHHHHHhccCceEEEEEEC-CCcEEEEEEeCcEEEEEEECCCCCCccccccccccccccccccccccccccCCCC
Confidence 3 6777777777889999999985 5899999888 88888888410 00 0 000011122
Q ss_pred cceEEEEehhhHHHhhccCCCCcccCCcceEEEE--cCCceEEEEEEEe
Q 022104 217 REVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII--GRGGMLKVQHLVS 263 (302)
Q Consensus 217 e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i--~~~g~L~~q~~i~ 263 (302)
+..+.+...+.+..+.+.-.++ -++|.+ ..+..+.+...+.
T Consensus 237 ~~~sV~Vd~K~~~~~l~~~~~~------p~~vi~~I~~~~~~vl~~~~~ 279 (292)
T PF04005_consen 237 EFASVRVDIKDLAKFLKSHQLS------PSRVICCICHNKALVLHVYLD 279 (292)
T ss_dssp --EEEEEEHHHHHHHHHH--S--------SEEEEEEETTTEEEEEEEE-
T ss_pred cEEEEEEEHHHHHHhhCccccC------CCEEEEEEccCCeEEEEEEEc
Confidence 2466788999999999965432 144444 7788888877663
No 16
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=98.86 E-value=3.7e-06 Score=79.92 Aligned_cols=204 Identities=11% Similarity=0.183 Sum_probs=140.0
Q ss_pred CChHHHHHHhccccc-ce---e----eeEEEEEeCCccEEEEEcCcE-EEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRW-KR---H----QDAVIELSEHGIILIVEETGC-LQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~-~d---~----~~a~~~is~~Gi~l~vd~s~~-~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+...|.++|+.+.+ .. . .-+.+++.++++++...|++. +...+.++.+ ..+ +..+.++-..|
T Consensus 129 i~~~~l~~~l~~v~~~~~~~~~~~~l~gI~~~~~~~~l~l~atD~~~~~~~~~~~~~~-------~~~-~~~~~i~~~~l 200 (365)
T cd00140 129 IPASELKELIKKTAFAVSTDETRPILNGVLLEIEDNKLRAVATDGHRLALREIELESG-------AEE-DFNVIVPRKTL 200 (365)
T ss_pred ECHHHHHHHHhhEEEEecCccCcccceEEEEEEECCEEEEEEEcCceEEEEEeecCCC-------Ccc-CceEEEechHH
Confidence 467788888887762 22 1 247888999999999666554 4555555432 112 46789999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++++.+...+ ..++|...+. .+.+..++ . .+.+++++.+-| ++. .-+. ....++.+....|+++++
T Consensus 201 ~~l~k~l~~~~--~~v~i~~~~~--~l~i~~~~--~---~~~~~li~~~yP--~~~~~ip~-~~~~~~~i~~~~L~~~l~ 268 (365)
T cd00140 201 NELLKLLEDDD--EEVEISISEN--QILFKLGN--T---TFTSRLIEGEFP--DYERVIPK-EFEKSLTVDREELLEALK 268 (365)
T ss_pred HHHHHhccCCC--CcEEEEEeCC--EEEEEECC--E---EEEEEEEeeECC--CchhcCCC-CCcEEEEEEHHHHHHHHH
Confidence 99999996312 4688888765 44444333 2 247777776544 432 1121 345789999999999999
Q ss_pred HhcCCCC----eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPGS----SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~sd----~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
.+...++ .|.+.+. ++++++++.+ .|.++..++. +. ..++.+..|..+||..+.|+++ +
T Consensus 269 ~~~~~~~~~~~~v~l~~~--~~~l~~~a~~~~~~~~~~~~~~--------~~-~g~~~~i~~~~~yL~d~lk~~~-~--- 333 (365)
T cd00140 269 RVSLLSNEKNRGVKLEIS--EGQLKLSANNPEIGEAEEELEV--------EY-EGEELEIGFNPKYLLDALKAID-S--- 333 (365)
T ss_pred HHhhhhccCCceEEEEEe--CCEEEEEEcCCCCceEEEEEEE--------Ee-cCCcEEEEECHHHHHHHHhcCC-C---
Confidence 9977654 5777776 6799999988 4888777761 11 1347899999999999999985 2
Q ss_pred CCcceEEEE---cCCceEEEEE
Q 022104 242 HNRGSKLII---GRGGMLKVQH 260 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~q~ 260 (302)
..|.| +...|+.+.+
T Consensus 334 ----~~v~i~~~~~~~p~~i~~ 351 (365)
T cd00140 334 ----EEVRLSFTDSNSPVLITP 351 (365)
T ss_pred ----CEEEEEECCCCCCEEEEc
Confidence 45666 4457886654
No 17
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=98.54 E-value=6.9e-05 Score=71.65 Aligned_cols=203 Identities=10% Similarity=0.146 Sum_probs=137.2
Q ss_pred CChHHHHHHhcccccc--e-e-----eeEEEEEeCCccEEEEEcCcE-EEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK--R-H-----QDAVIELSEHGIILIVEETGC-LQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~--d-~-----~~a~~~is~~Gi~l~vd~s~~-~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+...|.++|+.+.+. . . +-+.+++.+++|++..-|+|. +...+.++.+.++ +..+-|+-..|
T Consensus 131 i~~~~l~~~i~~v~~a~~~~~~~piL~gi~~~~~~~~l~l~aTD~~rl~~~~~~~~~~~~~--------~~~~~vp~k~l 202 (367)
T PRK05643 131 LPQKTLKRLIEKTQFAMSTQETRYYLNGVLLEIEGNELRAVATDGHRLAVRKLELEEGSLG--------DFSVIIPRKTL 202 (367)
T ss_pred ECHHHHHHHHhheeEEeecCCccccccEEEEEEeCCEEEEEEeccceeEEEEecccCCccc--------CceEEEchHHH
Confidence 4566787787766632 1 1 237788999999999777654 4665555433321 24577888999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++++.+.. + ..+++.+.+.. +.+..++ .. +.+++++.+-| ++. ..+. +...++.+....|.++++
T Consensus 203 ~ei~k~l~~-~--~~v~i~~~~~~--~~~~~~~--~~---~~~~li~g~yP--~~~~~ip~-~~~~~~~i~~~~L~~~i~ 269 (367)
T PRK05643 203 LELQKLLDD-E--EPVEIFISDNQ--ILFEFGN--TI---FTSKLIDGKFP--DYRRVIPK-EFDKKLTVDRKELLQALE 269 (367)
T ss_pred HHHHHhcCC-C--CcEEEEEeCCE--EEEEECC--EE---EEEEEeeecCC--ChhhhCCC-CCCEEEEEEHHHHHHHHH
Confidence 999999852 2 45788876654 4444322 23 36777765543 432 1122 445789999999999999
Q ss_pred HhcCC----CCeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWP----GSSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~----sd~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
.+... ...|.+.+. ++.+++++.+ .|.++..++. .+ ..++.+..|..+||..+.|++. +
T Consensus 270 rv~~~~~~~~~~i~l~~~--~~~l~~~a~~~~~g~a~~~i~~--------~~-~g~~~~i~~n~~yL~d~l~~~~-~--- 334 (367)
T PRK05643 270 RASILSNEKSRGVKLSLS--EGQLKISANNPEQGEAEEELEV--------EY-SGEELEIGFNVKYLLDVLKALD-S--- 334 (367)
T ss_pred HHHHHhcCCCceEEEEEe--CCEEEEEEECCCCCcEEEEEEE--------Ee-cCCcEEEEEcHHHHHHHHhcCC-C---
Confidence 98654 234777776 6789998877 7888777761 12 2457888999999999999985 2
Q ss_pred CCcceEEEE---cCCceEEEEE
Q 022104 242 HNRGSKLII---GRGGMLKVQH 260 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~q~ 260 (302)
..|.| +...|+.+..
T Consensus 335 ----~~v~i~~~~~~~p~~i~~ 352 (367)
T PRK05643 335 ----EEVRLSFNDANSPFLIRP 352 (367)
T ss_pred ----CEEEEEECCCCCCEEEEc
Confidence 55666 5578886664
No 18
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=98.31 E-value=0.0002 Score=67.98 Aligned_cols=202 Identities=13% Similarity=0.192 Sum_probs=136.7
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+...|+++|+.+.+. +. +-+.|++.++++++..-|+|.+ ...+.+. ...+ +..+-|+...|
T Consensus 113 i~~~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~~~~l~lvATDg~rla~~~~~~~--------~~~~-~~~~ivP~k~l 183 (345)
T smart00480 113 LPTKLLKEGIEKTAFAVSTDETRPVLNGVNLEISNGELRLVATDGHRLAVREIKLE--------SEED-DFSVIIPRKSL 183 (345)
T ss_pred ECHHHHHHHHhhEEEEEecCCCcceeeEEEEEEECCEEEEEEEcCceEEEEEeccC--------CCCC-cceEEEehHHH
Confidence 4667788888777642 11 2367788888889887777654 4443332 1111 36799999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCcccc-CCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNF-EPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f-~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++++.+...+ ..+++.+.+.. +.+..++ .. +.+++++.+-| ++.- .+. +...++.+....|+++++
T Consensus 184 ~el~k~l~~~~--~~v~i~~~~~~--~~~~~~~--~~---~~~~li~g~fP--~~~~vip~-~~~~~~~i~~~~L~~ai~ 251 (345)
T smart00480 184 LELNKLLTDNE--ELVEIFISSNQ--ILFETGN--VI---FTSRLIDGEFP--DYKRVIPK-EFETKLTVNRKELKEALK 251 (345)
T ss_pred HHHHHhccCCC--CcEEEEEeCCE--EEEEECC--EE---EEEEEeeecCC--CchhhCCC-CCCEEEEEEHHHHHHHHH
Confidence 99999996422 46788887654 4444333 23 36777775543 4421 122 455789999999999999
Q ss_pred HhcCCCC----eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPGS----SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~sd----~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
.+...++ .|.+.+. ++.+++++.+ .|.++-.++. .++ .++++-.|..+||..+.|++.
T Consensus 252 rv~~~~~~~~~~v~l~~~--~~~l~~~a~d~~~g~~~e~i~~--------~~~-g~~~~i~fN~~yL~d~l~~~~----- 315 (345)
T smart00480 252 RVALLANEKNRSVKLTLE--EGQLKLTANSPEVGEAEEEVDV--------DYE-GEDLEIAFNPKYLLDALKALK----- 315 (345)
T ss_pred HHhhhhcCCCceEEEEEe--CCEEEEEEcCCccceEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC-----
Confidence 8875543 3677766 6789998877 8988877771 122 467899999999999999985
Q ss_pred CCcceEEEE---cCCceEEEE
Q 022104 242 HNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~q 259 (302)
+.+|.| +...|..++
T Consensus 316 ---~~~v~l~~~~~~~p~~i~ 333 (345)
T smart00480 316 ---SEEIELKFTDSSSPFLIS 333 (345)
T ss_pred ---CCEEEEEECCCCCCEEEE
Confidence 367777 556677553
No 19
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=98.19 E-value=0.00044 Score=66.21 Aligned_cols=201 Identities=14% Similarity=0.190 Sum_probs=139.2
Q ss_pred ECChHHHHHHhcccccc---e-----eeeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 17 LDNVQGLVDALSAVRWK---R-----HQDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 17 ~~~a~~l~~iL~aI~~~---d-----~~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
.-+...|+++|+.+.+. + -+-+.|++.++++++..-|+|.. ...+.+. +. + +..+-|+-..
T Consensus 126 ~i~~~~L~~~i~~v~~avs~~~~~piL~gv~l~~~~~~l~lvATDg~rla~~~~~~~--------~~-~-~~~~iip~k~ 195 (362)
T PRK14945 126 RLSAGELAKALTHVRYAASNEEFQAIFRGVKLEHSPQGLRAVASDGYRLAIYDLPAS--------QG-Q-GRKLVIPARS 195 (362)
T ss_pred EECHHHHHHHHhhEEEEEecccchhheeeEEEEEeCCEEEEEEEccceEEEEEeccC--------CC-C-CceEEEEHHH
Confidence 45677888888887743 1 12377888889999997777744 4443221 22 2 4678999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHH
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAI 166 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~ 166 (302)
|.++++.+.. + +.+++.+.+.. +.+..++ .. +.+++++.+-| ++. ..+. +...++.++...|.+++
T Consensus 196 l~el~k~l~~-~--~~v~i~~~~~~--i~~~~~~--~~---~~~~lidg~fP--~~~~vip~-~~~~~v~i~~~~L~~~l 262 (362)
T PRK14945 196 ADELVRVLKD-G--DEASLALGEGV--LTLTTGG--VR---MNLKLMEGEFP--DYERVIPQ-DFKLQVTLPAEALREAV 262 (362)
T ss_pred HHHHHHhcCC-C--CcEEEEEcCCE--EEEEECC--EE---EEEEeecccCC--ChhhhCCC-CCCEEEEEEHHHHHHHH
Confidence 9999999964 2 26888887654 4444332 23 48888885543 443 1121 34578999999999999
Q ss_pred HHhcCCCC-----eEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeC-cceEEEEehhhHHHhhccCCCCc
Q 022104 167 DDLEWPGS-----SIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCD-REVSYRYKYKFLRATTSNLPGCV 239 (302)
Q Consensus 167 ~dL~~~sd-----~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~-e~v~~~Y~l~yL~~~~KAl~lS~ 239 (302)
+.....++ .|.+.+. ++.+++++.+ .|.+..+++ ..++-. ++++-.|..+||..++|++.
T Consensus 263 ~r~~~~~~~~~~~~v~l~~~--~~~l~~~a~~~~g~a~~~i~--------~~~~G~~~~~~i~fN~~yl~d~L~~~~--- 329 (362)
T PRK14945 263 NRVAVLSDRNANNRVELLVA--EGRLRLTAEGDYGRGQEELA--------VTQEGSEPAMALAYNARYLLDALAPIE--- 329 (362)
T ss_pred HHHhhhhccCCCccEEEEEE--CCEEEEEecCCCceEEEEEE--------EEeecCCCCEEEEECHHHHHHHHHhCC---
Confidence 99875432 2677766 6789999888 998887776 224444 47899999999999999984
Q ss_pred ccCCcceEEEE---cCCceEEEE
Q 022104 240 IKHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 240 ~~~~~~~~V~i---~~~g~L~~q 259 (302)
+.|.| +...|..+.
T Consensus 330 ------~~v~l~~~~~~~p~~i~ 346 (362)
T PRK14945 330 ------GDARLGFSGPTSPSVLR 346 (362)
T ss_pred ------CcEEEEECCCCCCEEEE
Confidence 34777 556777443
No 20
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=98.09 E-value=0.0029 Score=60.77 Aligned_cols=202 Identities=12% Similarity=0.110 Sum_probs=135.0
Q ss_pred CChHHHHHHhcccccc--e------eeeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK--R------HQDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~--d------~~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++|+.+.|. . -+-+.+++.+++|++..-|+|-+ .....++.+ .. +...+-|+-..|
T Consensus 130 i~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~------~~--~~~~viiP~k~l 201 (367)
T PRK14940 130 IPTKDLREMINQTIFAVSDDETRYFMNGVYVEFQYGNIICVATDGRRLAYIKKKGESS------PQ--EFSGVIVPPKIL 201 (367)
T ss_pred ECHHHHHHHHhhEeEEEcCCCCCceeEEEEEEEeCCEEEEEEEcCceEEEEEeccCCC------cc--ccceEEEcHHHH
Confidence 4667788888877743 1 12377888888899998888764 444443321 11 123567788888
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccC-CCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFE-PAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~-~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++.+++.. + ..+++.+.+..+ .+..++ . .+..++++.+-| ++.-- +. ....++.+....|.++++
T Consensus 202 ~~l~kll~~-~--~~v~i~~~~~~i--~f~~~~--~---~~~~rlidg~fP--dy~~vip~-~~~~~~~i~~~~L~~al~ 268 (367)
T PRK14940 202 GIINKKLSP-E--GNVTLCITSQNI--FFFFGG--Y---KFSSVLIEGQFP--NYKRVIPD-HQERSFCVGRVELMEALK 268 (367)
T ss_pred HHHHHhcCC-C--CcEEEEEeCCEE--EEEECC--E---EEEEEEcccccc--chHhhCCC-CCCEEEEEEHHHHHHHHH
Confidence 888888753 2 467787766553 344332 2 337788887544 43311 22 345689999999999999
Q ss_pred HhcCCC----CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPG----SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~s----d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
-+...+ ..|.+.+. ++.+++++.. .|+++-+++. .++ .++.+-.|-.+||..+.|++.
T Consensus 269 R~~~~~~~~~~~v~l~~~--~~~l~l~~~~~e~G~~~e~i~~--------~~~-Ge~~~I~fN~~yl~d~L~~i~----- 332 (367)
T PRK14940 269 RVSLLVEQKSRRIFLTIQ--QGLLTLSSQENEIGDAQEEIAC--------AYT-GEEEVIALNYLYLEEPLKVFT----- 332 (367)
T ss_pred HHHHHhccCCceEEEEEe--CCEEEEEEcCCCCccEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhCCC-----
Confidence 986543 24677776 6789998766 8988777761 122 357788999999999999984
Q ss_pred CCcceEEEE---cCCceEEEE
Q 022104 242 HNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~q 259 (302)
...|.| +...|..++
T Consensus 333 ---~~~v~l~~~~~~~p~~i~ 350 (367)
T PRK14940 333 ---SKEVQVEFTEAAKAITLR 350 (367)
T ss_pred ---CCEEEEEECCCCCCEEEE
Confidence 367777 556787554
No 21
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.97 E-value=0.0015 Score=59.12 Aligned_cols=239 Identities=11% Similarity=0.118 Sum_probs=149.8
Q ss_pred eEEEEECC---hHHHHHHhcccc-cceeeeEEEEEeCCccEEEE-E--cCcEEEEEEEe-cccCceeEEeCC----CCcc
Q 022104 12 DLVCQLDN---VQGLVDALSAVR-WKRHQDAVIELSEHGIILIV-E--ETGCLQAKVYL-QRELFVRYEYSA----QGRP 79 (302)
Q Consensus 12 ~f~a~~~~---a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~v-d--~s~~~~~~~~l-~~~~F~~Y~~~~----~~~~ 79 (302)
.|.|.+.+ ...|++|+.++. +.+. |.+.++++-+.|.. + ++...|+-+-+ ....|++|+... ++.+
T Consensus 2 KFka~l~d~~~l~~f~ril~al~Kl~K~--C~l~l~~e~lnFI~c~~~~~~~~~~ws~~~~e~iF~dy~m~s~~p~~e~I 79 (284)
T KOG3999|consen 2 KFKALLQDNAVLLLFTRILPALDKLGKN--CHLRLTKEHLNFIHCDLLDGGSVQVWSQLEKEVIFDDYRMESQNPNNEEI 79 (284)
T ss_pred chhhhhccchHHHHHHHHHHHHHHhhhc--eEEEecccceEEEEecccCCCceEEEEeeehhhcchhheeeccCCCcceE
Confidence 47888888 889999999997 5556 99999999999996 5 45555555444 556899999852 2358
Q ss_pred eEEEEchhHHHHHHhCCCCCCceEEEEEEcC-CCeEEEEEECCCCCeEEEEEEEecCCCC--cc----Ccc--ccCCCCC
Q 022104 80 RFGVSLGLFADCLNTFSAPGHSSLIEIRYPG-PDMQLLVKSVDSPDACIYAEVRTRIPDM--IS----WDY--NFEPAGS 150 (302)
Q Consensus 80 ~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g-~~l~l~le~~~~~~~~~~~~i~t~e~d~--~~----ld~--~f~~~~~ 150 (302)
.|+++...|...|+...+..+...++|+-.- +++++..|--..... ...+-+-+..- ++ -++ +..+ +
T Consensus 80 ~L~v~~~nl~rAlrs~~~g~~~lklKLskk~~p~~t~~~~~lt~~a~--~s~iVtHdIPItii~~s~w~~~~~P~vp--~ 155 (284)
T KOG3999|consen 80 NLEVDSANLYRALRSLVGGANRLKLKLSKKQFPCLTVSVEVLTFEAK--GSRIVTHDIPITIISRSYWSEYQEPLVP--A 155 (284)
T ss_pred EEEecHHHHHHHHHHhcCcccceEEEehhccCCCceeeeeeeccccc--cCceeEecCCeEEecHHHhhhhcCcCCC--C
Confidence 8999999999999998542212344444433 245544331110000 00222222110 00 011 1111 2
Q ss_pred ccEEEEEehH-HHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc-----CCCCcEEEEEeCcceEEEE
Q 022104 151 TPLTFTVKSA-ALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY-----VNTDLLIAFHCDREVSYRY 223 (302)
Q Consensus 151 ~~~~v~m~s~-~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~-----~~s~~l~~f~~~e~v~~~Y 223 (302)
-.+.|-||.- .|+..+.-+...|+.+.++++- .+.+.++++- .+.+.++|..- +++...+.....+.++..-
T Consensus 156 ~dl~I~lP~l~~lk~~vdk~Knis~~l~~tan~-~GeLqv~v~~e~~~vtt~Fq~L~~~~~~s~s~~edr~~e~~a~~~l 234 (284)
T KOG3999|consen 156 PDLSIQLPDLNQLKSFVDKMKNISDVLNVTANK-SGELQVSVSIELIRVTTEFQDLSNPPLKSSSPVEDRSAEARAEVAL 234 (284)
T ss_pred CCcceeCCCHHHHHHHHHHhhcccceEEEEEec-CceEEEEEEEeeEEEEEEhhhccCCCCCCcccccccChhhhhhhee
Confidence 2345777765 6677777778899999999875 4789999998 88888888521 2222334444455667777
Q ss_pred ehhhHHHhhccCCCCcccCCcceEEEEcCCceEEEEEEEe
Q 022104 224 KYKFLRATTSNLPGCVIKHNRGSKLIIGRGGMLKVQHLVS 263 (302)
Q Consensus 224 ~l~yL~~~~KAl~lS~~~~~~~~~V~i~~~g~L~~q~~i~ 263 (302)
..+-+..+.++..+- .++..++-.++=++.|-+.
T Consensus 235 d~r~~~~~~~s~~~~------~~~l~c~i~~~~~v~~~~~ 268 (284)
T KOG3999|consen 235 DSRDASSFFVSVQVF------STSLQCNITKNDSVHYGIA 268 (284)
T ss_pred hhhhHHHHHHHhhcC------cceeEEeeccCceEEEeec
Confidence 888888888887653 3555554444445555554
No 22
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=97.86 E-value=0.014 Score=55.71 Aligned_cols=201 Identities=14% Similarity=0.169 Sum_probs=129.2
Q ss_pred CChHHHHHHhcccccc-e--e-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK-R--H-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~-d--~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+...|.++++.+.+. . . .-+.|++.++.+++...|+|-+ .....++. ... + ...+-|+-..|
T Consensus 129 i~~~~l~~~i~~v~~a~~~~~~r~~L~gi~~~~~~~~l~~~atDg~RLa~~~~~~~~------~~~-~-~~~~iiP~k~l 200 (367)
T TIGR00663 129 IPSDVLKEAINQTAFAAGEDETRPVLNGVLIEQKGKTLLLVATDGHRLAVCKLKSEV------SDE-E-DFSVIIPAKAL 200 (367)
T ss_pred ECHHHHHHHHhhEEEEEecCCCCcccceEEEEEeCCEEEEEEecchheEEEeccccC------CCC-c-cceEEEecHHH
Confidence 4788889999888733 2 1 2377888888888888888743 33222211 111 1 35789999999
Q ss_pred HHHHHhCCCCCCceEEEE-EEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEI-RYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAI 166 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l-~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~ 166 (302)
.++++.+...+ ...+ .+.+..+. |..++ .. +..++++-+-| ++. ..+. +...++.+....|.+++
T Consensus 201 ~el~~~l~~~~---~~~~~~~~~~~~~--~~~~~--~~---~~~rli~g~yP--~y~~vip~-~~~~~~~i~~~~L~~al 267 (367)
T TIGR00663 201 NELLKLLSENG---SVVLKSLNDQLVY--IELGN--YK---FTSKLIEGNYP--DYKSVIPK-EQKNSFTVNREELKEAI 267 (367)
T ss_pred HHHHHHhcCCC---CeEEEEEeCCEEE--EEECC--EE---EEEEEeeccCC--CccccCCC-CCCEEEEEeHHHHHHHH
Confidence 99999986422 2333 33333443 33232 12 25666664433 322 1122 44579999999999999
Q ss_pred HHhcCCCC----eEEEEEecCCC-cEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCc
Q 022104 167 DDLEWPGS----SIQIKLQPVPP-SVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCV 239 (302)
Q Consensus 167 ~dL~~~sd----~v~i~~~p~~~-~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~ 239 (302)
+-+...++ .|.+.+. ++ .+++++.+ .|.++..++. .++ .++.+-.|..+||..+.|++.
T Consensus 268 ~rv~~~~~~~~~~v~~~~~--~~~~l~i~~~~~~~g~~~e~i~~--------~~~-g~~~~i~fN~~yL~d~l~~~~--- 333 (367)
T TIGR00663 268 KRVSLLADEKRNLVLTLSE--NGKKLKESSDTQEIGEAEEEIEV--------AYD-GEDLVIAFNIKYLLDALKALK--- 333 (367)
T ss_pred HHHHHHhcCCCceEEEEEC--CCCeEEEEEcCCCCccEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC---
Confidence 98854332 4666665 55 89998876 7888877761 122 257888999999999999984
Q ss_pred ccCCcceEEEE---cCCceEEE
Q 022104 240 IKHNRGSKLII---GRGGMLKV 258 (302)
Q Consensus 240 ~~~~~~~~V~i---~~~g~L~~ 258 (302)
...|.| +...|..+
T Consensus 334 -----~~~v~l~~~~~~~p~~i 350 (367)
T TIGR00663 334 -----SKEIQIQFNDPSKPLLI 350 (367)
T ss_pred -----CCEEEEEECCCCCCEEE
Confidence 267777 55667633
No 23
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=97.84 E-value=0.017 Score=55.78 Aligned_cols=201 Identities=7% Similarity=0.108 Sum_probs=135.8
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++...|. ++ .=+.+++.+++|++..-|||-+ .....++.+ .. ....+=|....|
T Consensus 137 i~~~~L~~~i~~t~fa~s~de~R~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~------~~--~~~~~iIP~k~l 208 (373)
T PRK14942 137 FPSQLINDMIRKTSYAIAHEDQRFIFNGLYMIPDGTKLIFVGTDGRRLCKIERTLPSP------LQ--FKDSIIVPAKAV 208 (373)
T ss_pred ECHHHHHHHHhhEeEEEeccccchhheeEEEEEeCCEEEEEEechHHeEEEecccCCC------CC--CCceEEEehHHH
Confidence 4678888999887754 11 2277888888899998888744 444444321 11 124688999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++++++.. + ..+++.+.+..+.+.+ ++ ... .-++++-.-| ++. ..|. +...++.+....|.++++
T Consensus 209 ~el~kll~~-~--~~v~i~~~~~~i~f~~--~~--~~~---~srLieG~yP--dy~~vIP~-~~~~~~~v~r~~l~~al~ 275 (373)
T PRK14942 209 REISKMIAT-S--ETGNIGLIDEQIYVSA--NN--IEL---LCKLIEGNFP--NYEQVIPK-QTKFSVRISKEEFQVSLR 275 (373)
T ss_pred HHHHHhcCC-C--CcEEEEEcCCEEEEEE--CC--EEE---EEEecccCCC--ChhhhCCC-CCCeEEEEeHHHHHHHHH
Confidence 999999963 2 3578888776544443 33 122 5566665543 332 2222 456789999999999999
Q ss_pred HhcCCC----CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPG----SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~s----d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
-+...+ ..|.+.+. ++.+.+++.. .|+++-++|. .++ .++.+-.|--+||..+.|++.
T Consensus 276 Rv~~~~~~~~~~v~l~~~--~~~l~isa~~~~~g~~~e~i~~--------~~~-G~~~~I~fN~~ylld~L~~i~----- 339 (373)
T PRK14942 276 QVLTAAEEPSRQVRLTFS--KNNLNLFAQTLGASEADINMPI--------EYS-GEEITIAFKGEYLMDIFRSID----- 339 (373)
T ss_pred HHHHHhhcCCceEEEEEe--CCEEEEEEeCCCcceEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC-----
Confidence 876542 34667665 6789998877 7888777761 122 247888999999999999984
Q ss_pred CCcceEEEE---cCCceEEE
Q 022104 242 HNRGSKLII---GRGGMLKV 258 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~ 258 (302)
...|.| +...|..+
T Consensus 340 ---~~~v~l~~~~~~~P~~i 356 (373)
T PRK14942 340 ---DNEVKIEFSDSSSPVIF 356 (373)
T ss_pred ---CCeEEEEECCCCCCEEE
Confidence 367777 55777744
No 24
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=97.82 E-value=0.0065 Score=58.64 Aligned_cols=204 Identities=9% Similarity=0.166 Sum_probs=136.0
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++.+.|. ++ +=+.+++.++.+.+..-|||-+ .....+.. + . +..+-|+-..|
T Consensus 136 i~~~~L~~~i~kt~fA~s~~e~r~~L~Gv~l~~~~~~l~~vaTDg~RLA~~~~~~~~--------~-~-~~~~iIP~k~l 205 (376)
T PRK06673 136 IETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDHNKLICAATDSHRLAIRETLIST--------N-M-KANCIVPSATI 205 (376)
T ss_pred ECHHHHHHHHhhEeEEEecCCCChhceeEEEEEeCCEEEEEEecCceEEEEecccCC--------C-C-CCcEEEEHHHH
Confidence 4677788888877754 11 2277888888899888788754 44444321 1 1 23578899999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.+++++++..+ ..+++.+.+..+.+.+. + ... ..++++-.-| ++. +.|. +...++++....|.++++
T Consensus 206 ~el~kll~~~~--~~v~i~~~~~~i~f~~~--~--~~~---~srLieG~fP--dy~~vip~-~~~~~v~i~r~~l~~al~ 273 (376)
T PRK06673 206 NELLKLMNSNL--EFVSIYLSESHIIFTFG--T--TTL---YSRLIEGKYP--NISTLIPN-EFQTVINIDRQRMLQGVD 273 (376)
T ss_pred HHHHHhccCCC--ceEEEEEeCCEEEEEEC--C--EEE---EEEEecccCC--ChhhcCCC-CCcEEEEEEHHHHHHHHH
Confidence 99999996423 46888887665555442 2 222 5566665543 332 2222 455789999999999999
Q ss_pred HhcCCCC-----eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 168 DLEWPGS-----SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 168 dL~~~sd-----~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
-+...+. .|.+.+. +++.+++++.. .|+++-+++. ..++-.++.+-.|..+||..+.|++.
T Consensus 274 Rvsi~~~~~~~~~v~l~~~-~~~~l~i~s~~~e~G~a~e~i~~-------~~~~Ge~~~~I~fN~~YLld~L~~i~---- 341 (376)
T PRK06673 274 RSSLLASEWANNNVNLEIV-NESTIQISSNASQIGKISETQQI-------DAIQGEKQLNISFDGRFMLDALRAIK---- 341 (376)
T ss_pred HHHHhhccCCCCcEEEEEc-CCCEEEEEEcCCCCCcEEEEEEe-------eecCCCccEEEEECHHHHHHHHhcCC----
Confidence 9876542 3777762 25789998877 8988877761 11222227888999999999999984
Q ss_pred cCCcceEEEE---cCCceEEEE
Q 022104 241 KHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 241 ~~~~~~~V~i---~~~g~L~~q 259 (302)
+..|.| +...|..++
T Consensus 342 ----~e~v~l~~~~~~~p~li~ 359 (376)
T PRK06673 342 ----EETVTLSFSGSMRPILIE 359 (376)
T ss_pred ----CCEEEEEECCCCCCEEEE
Confidence 366777 557776443
No 25
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=97.81 E-value=0.015 Score=56.05 Aligned_cols=203 Identities=8% Similarity=0.061 Sum_probs=136.1
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++-+.|. ++ .=+.|++.++.|++..-|||-+ .....+..+. . +..+=|+-..|
T Consensus 133 i~~~~l~~~i~~t~fa~s~de~r~~L~Gv~~~~~~~~l~~vATDghRLa~~~~~~~~~~--------~-~~~~iIP~k~l 203 (375)
T PRK14944 133 IKTHFFKKIIKEINISTSKNEKRPILTGLNLIYQKNLLKALATDSFRMSQKKIKLDFNY--------H-NFNIVIPNKSL 203 (375)
T ss_pred ECHHHHHHHHhheeEEEccccCccceeEEEEEEECCEEEEEEEccceeEEEEeccCCCC--------C-ceEEEEECchH
Confidence 5677888888888754 11 2277888888899998888755 5444443221 1 24578889999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++++++...+ +..+++.+.+..+.+.++ + ... .-++++-.-| ++. ..|. +...++.+....|.++++
T Consensus 204 ~el~kll~~~~-~~~v~i~~~~~~i~f~~~--~--~~~---~srLieG~fP--dy~~viP~-~~~~~~~i~r~~l~~al~ 272 (375)
T PRK14944 204 EELSKILEYYQ-SKNLKIYSDSKKIFLKID--N--LWF---QTSLLEGNYP--QIQEIKLT-NFPFSIHLNKDDLMKALE 272 (375)
T ss_pred HHHHHHhccCC-CCcEEEEEcCCEEEEEEC--C--EEE---EEEeecccCC--ChhhhCCC-CCCeEEEEeHHHHHHHHH
Confidence 99999986312 256888887766666553 2 222 5566665443 332 1122 455789999999999999
Q ss_pred HhcCCCC-------eEEEEEecCCCcEEEEEee--ceEEEEEE-eccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCC
Q 022104 168 DLEWPGS-------SIQIKLQPVPPSVSFKGEG--HGDLQIDF-MYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPG 237 (302)
Q Consensus 168 dL~~~sd-------~v~i~~~p~~~~~~~s~~G--~G~~~i~~-~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~l 237 (302)
-+...+. .|.+.+. +++.+.+++.. +|+++-++ +. .++ .++.+-.|-.+||..+.|++.
T Consensus 273 Rvslls~~~~~~~~~v~l~~~-~~~~l~iss~~~e~G~a~e~i~~~--------~~~-Ge~~~I~fN~~YL~d~L~~i~- 341 (375)
T PRK14944 273 RVSLLFSKEQNNTNVVKFILT-KEKSIEISSSNESLGTALEKIIPL--------KVS-ANSFEIAFNAKYLEDILKVLS- 341 (375)
T ss_pred HHHHHhccccCCCceEEEEEc-CCCEEEEEEcCcccCeEEEEEecc--------ccc-CCcEEEEEcHHHHHHHHhcCC-
Confidence 9877542 2777763 14678998876 89886553 41 111 257788999999999999984
Q ss_pred CcccCCcceEEEE---cCCceEEE
Q 022104 238 CVIKHNRGSKLII---GRGGMLKV 258 (302)
Q Consensus 238 S~~~~~~~~~V~i---~~~g~L~~ 258 (302)
+..|+| +..+|..+
T Consensus 342 -------~~~v~i~~~~~~~p~~i 358 (375)
T PRK14944 342 -------VKEIVFYFDSPLKPFIV 358 (375)
T ss_pred -------CCEEEEEECCCCCCEEE
Confidence 367777 55677744
No 26
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=97.79 E-value=0.022 Score=54.75 Aligned_cols=205 Identities=12% Similarity=0.143 Sum_probs=135.3
Q ss_pred ECChHHHHHHhcccccc-e--e-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 17 LDNVQGLVDALSAVRWK-R--H-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 17 ~~~a~~l~~iL~aI~~~-d--~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
.-+...|.++|+.+.+. . . +-+.|++.++.|++..-|+|-+ .....+.... ++ + +..+-|+-..
T Consensus 126 ~i~~~~L~~~i~~v~~a~s~~~~~piL~gV~l~~~~~~L~l~ATDg~rLa~~~~~~~~~~-----~~-~-~~~~iIP~k~ 198 (376)
T PRK07761 126 TVDADAFAEAVSQVAVAAGRDDTLPMLTGVRVEIEGDTVTLAATDRYRLAVRELTWKPAS-----PD-I-SAAALVPART 198 (376)
T ss_pred EECHHHHHHHHhhEeEEEEcccchhhhceEEEEEeCCEEEEEEECCceEEEEEeccCCCC-----CC-c-ceeEEEEhHH
Confidence 45677788888877642 1 1 2267788888899998887654 3333222211 22 1 3678999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEc---CCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHH
Q 022104 88 FADCLNTFSAPGHSSLIEIRYP---GPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALK 163 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~---g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~ 163 (302)
|.++++.+.. + ..+++.+. +..-.+.+..++ ..+.+++++.+-| ++. +.+. ....++.+....|+
T Consensus 199 l~ei~k~l~~-~--~~v~i~~~~~~~~~~~i~~~~~~-----~~~~~~li~g~fP--~~~~vip~-~~~~~~~i~~~~L~ 267 (376)
T PRK07761 199 LSDTAKSLGS-G--GNVSIALSTGVGGEGLIGFEGGG-----RRTTTRLLDGEFP--KVRRLFPD-EHPAVAVVETAPLI 267 (376)
T ss_pred HHHHHHhcCC-C--CcEEEEEecCcCCCCEEEEEECC-----EEEEEEEecccCC--ChHhhCCC-CCCEEEEEEHHHHH
Confidence 9999999964 2 34667765 223345555333 2347888887544 442 1122 33468999999999
Q ss_pred HHHHHhcCCC---CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCC
Q 022104 164 EAIDDLEWPG---SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGC 238 (302)
Q Consensus 164 ~a~~dL~~~s---d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS 238 (302)
++++-....+ ..|.+.+. .+.+++++.. .|.++-.+|. .++ .++++-.|..+||..++|++.
T Consensus 268 ~~l~r~~~~~~~~~~v~l~~~--~~~l~l~~~~~~~G~~~e~i~~--------~~~-Ge~~~i~fN~~yl~d~L~~~~-- 334 (376)
T PRK07761 268 EAIKRVALVAERNAPVRLEFS--DGQLTLSAGGGDDAQASEALEA--------DLT-GEDLTIAFNPQYLLDGLSALH-- 334 (376)
T ss_pred HHHHHHHHHhcCCceEEEEEe--CCEEEEEEcCCCcceEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC--
Confidence 9999876543 34777776 6789998876 8888766761 122 357888999999999999995
Q ss_pred cccCCcceEEEE---cCCceEEE
Q 022104 239 VIKHNRGSKLII---GRGGMLKV 258 (302)
Q Consensus 239 ~~~~~~~~~V~i---~~~g~L~~ 258 (302)
..+|.| +...|..+
T Consensus 335 ------~~~v~l~~~~~~~p~~i 351 (376)
T PRK07761 335 ------TPRVRFGFTTPSKPALL 351 (376)
T ss_pred ------CCeEEEEECCCCCCEEE
Confidence 377777 55667644
No 27
>KOG2810 consensus Checkpoint 9-1-1 complex, RAD9 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.64 E-value=0.00022 Score=68.02 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=128.0
Q ss_pred EECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHH
Q 022104 16 QLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLN 93 (302)
Q Consensus 16 ~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~ 93 (302)
.-.|+|.|.+++-++. +.++ +++.+++.||.++ +..++...+.+.+.+..|..|.+... ...|++. -.+.-||+
T Consensus 6 s~~nlr~lArai~sLSri~~e--v~iev~~~~l~l~t~N~srSa~~~~~f~~~FF~~ydf~~~-q~~~~~~-v~mK~cls 81 (394)
T KOG2810|consen 6 SGSNLRVLARAIVSLSRIGEE--VTIEVSPLGLCLKTVNESRSAFSCATFKEMFFGVYDFQPP-QADFGCK-VSMKFCLS 81 (394)
T ss_pred ccchhHHHHHHhhhHhhhcce--eEEEEcCCeeEEEecccccchhhhhhhhHhhccchhcCCc-cccchhh-hhHHHHHH
Confidence 3478999999999998 5556 9999999999999 88899999999999999999999743 3556611 23345666
Q ss_pred hCCC----CCCceEEEEEEcCC---CeEEEEEEC-CCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHH
Q 022104 94 TFSA----PGHSSLIEIRYPGP---DMQLLVKSV-DSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEA 165 (302)
Q Consensus 94 ~f~~----~~~~~~l~l~y~g~---~l~l~le~~-~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a 165 (302)
.|.. ......+...+.++ ++.+.|... ++..+. .+...+.+.+ .-.|++. .-.+.+.+....|+++
T Consensus 82 vFRgl~~~~~~~~~~~~~~~d~~s~rl~~~l~ckl~~~kt~---~atl~d~qS~--~~~~d~~-~~~n~~~~~~~~L~~~ 155 (394)
T KOG2810|consen 82 VFRGLLFFAESTHLCESILFDAPSRRLIFTLKCKLGVGKTI---LATLSDTQSI--QHVLDSS-ECPNILVQLAKILTPI 155 (394)
T ss_pred HHhhhcccccccceeeeecCCCCCcceEEEehhhhcccceE---EEEeecchhh--hhccCcc-cCCcceecchhhcccc
Confidence 6541 11223455666554 666666543 333232 4554444443 3346555 5667889999999999
Q ss_pred HHHhcCCCCeEEEEEecCCCcEEEEE-ee-ceEEEEEEecc-----CCCCcEEEEEeCcceEEEEehhhHHHh
Q 022104 166 IDDLEWPGSSIQIKLQPVPPSVSFKG-EG-HGDLQIDFMYY-----VNTDLLIAFHCDREVSYRYKYKFLRAT 231 (302)
Q Consensus 166 ~~dL~~~sd~v~i~~~p~~~~~~~s~-~G-~G~~~i~~~~~-----~~s~~l~~f~~~e~v~~~Y~l~yL~~~ 231 (302)
.......-..+++.+. .+...+.. .. ++-.++..... .+...++.-.+.+|++-++.++..+.+
T Consensus 156 ~~nF~~~~~E~Tm~a~--~~r~~~~~~~~~i~~~~i~~~p~~t~~k~~~se~e~~~~~~p~ev~gsl~~~~~~ 226 (394)
T KOG2810|consen 156 PDNFAGSDIELTMKAT--DGRRLIENFLTSIVGPEISLSPGPTPVKIDGSELEEEDVAEPSEVPGSLKEFKFI 226 (394)
T ss_pred cccccccchhheeecc--CCceecccchhhhcchhhcCCcCCcCcCCCcchhheeeecccceeecchhHHHHH
Confidence 8888655556666554 33443332 11 22222222211 112234555566777777777655543
No 28
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=97.54 E-value=0.051 Score=52.64 Aligned_cols=206 Identities=11% Similarity=0.103 Sum_probs=131.7
Q ss_pred CChHHHHHHhcccccce---e-----eeEEEEEeCC-ccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 18 DNVQGLVDALSAVRWKR---H-----QDAVIELSEH-GIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d---~-----~~a~~~is~~-Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
-++..|+++++...|.- + .=+.|+..++ .|++..-|||-+ .....+. +....+ . ...+=|.-..
T Consensus 130 i~~~~L~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~-~~~~~~----~-~~~~iIP~k~ 203 (384)
T PRK14947 130 WSGDFLQELIDRIAFCISDEDAMEAIACLKIKPVADNAIEVCGLNGHQFALLRFLND-DIHAKL----P-QEGILIQKKY 203 (384)
T ss_pred ECHHHHHHHHhheeeEeeccchhhhhceEEEEEcCCCEEEEEEcCccceEEEEcccc-cccccc----C-CccEEEechH
Confidence 36778899888887541 1 1145665444 488887788754 4433221 111010 1 2357889999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCC--CCccEEEEEehHHHHH
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPA--GSTPLTFTVKSAALKE 164 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~--~~~~~~v~m~s~~l~~ 164 (302)
|.+++++++. +.++|.+.+..+.+.++..+ .. +.-++++-.-| ++. ..|. .+...++.+....|.+
T Consensus 204 l~el~kll~~----~~v~i~~~~~~i~f~~~~~~--~~---~~srLieG~fP--dY~~vIP~~~~~~~~~~~i~r~~l~~ 272 (384)
T PRK14947 204 LLELKKWLGA----DEIELSISEKRLFFRTGDGK--ET---FSLPLSYYQYP--DYMNFLSKLQGDDVSNLEVDRKECMD 272 (384)
T ss_pred HHHHHHhCCC----CcEEEEEeCCEEEEEECCcE--EE---EEEEeeecccC--cceeeCCCCCCCCCEEEEEEHHHHHH
Confidence 9999999863 45788887766555543111 12 24555554433 322 1110 0234689999999999
Q ss_pred HHHHhcCCC----CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCC
Q 022104 165 AIDDLEWPG----SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGC 238 (302)
Q Consensus 165 a~~dL~~~s----d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS 238 (302)
+++-+...+ ..|.+.+. ++.+.+++.. .|+++-+++. +++ .++.+-.|..+||..+.|++.
T Consensus 273 al~Rvsi~s~~~~~~v~l~~~--~~~l~iss~~~e~G~a~E~i~~--------~~~-Ge~~~I~fN~~YL~d~L~~i~-- 339 (384)
T PRK14947 273 ALDRILIFNTDNNRCTYFDFG--PGELSLSAQGQDVGSATESLEV--------TYS-GDIKKIAFPTKNLIEILGHFQ-- 339 (384)
T ss_pred HHHHHHHHhcCCCceEEEEEe--CCEEEEEEcCCCCceEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC--
Confidence 999887653 23777776 6789999876 8988877761 122 246788999999999999985
Q ss_pred cccCCcceEEEE---cCCceEEEE
Q 022104 239 VIKHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 239 ~~~~~~~~~V~i---~~~g~L~~q 259 (302)
+.+|.| +..+|..++
T Consensus 340 ------~~~i~l~~~~~~~p~~i~ 357 (384)
T PRK14947 340 ------SDKITLTLTGAEGPCGIT 357 (384)
T ss_pred ------CCeEEEEECCCCCCEEEE
Confidence 366777 667887554
No 29
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=97.52 E-value=0.082 Score=50.95 Aligned_cols=203 Identities=10% Similarity=0.166 Sum_probs=127.4
Q ss_pred CChHHHHHHhcccccc--e------eeeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK--R------HQDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~--d------~~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+...|+++|+.+.|. . -+-+.+++.+++|++..-|+|-+ +..+.+..+ +. + +..+-|+-..|
T Consensus 133 i~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~l~~~~~~l~lvATDg~Rla~~~~~~~~~------~~-~-~~~~iiP~k~l 204 (374)
T PRK14941 133 LETSELLDLIQKTIFACSVDGMRPAMMGVLFELEGNTITAVSTDGHRLVRCRKNSSVG------VE-E-KQKIVVPARVL 204 (374)
T ss_pred ECHHHHHHHHhheeEEEecccchhhhceEEEEEeCCEEEEEEecCeeEEEEEecccCC------cc-c-cceEEechHHH
Confidence 4666777777777643 1 12377888888899998888755 444443221 12 1 35788999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.++.++... + .+++......-.+.+..++ ... .-++.+-+-| ++. ..|. +...++.+....|+++++
T Consensus 205 ~el~kll~~-~---~v~i~~~~~~~~i~~~~~~--~~~---~s~Li~g~fP--dy~~viP~-~~~~~i~i~~~~L~~al~ 272 (374)
T PRK14941 205 SILQKLAQH-E---TVTMSIDSERRFVRFICGN--VVL---DAALIVEPYP--NYEAVIPV-ENDKKLVINRSNIYDSVK 272 (374)
T ss_pred HHHHHhCCC-C---ceEEEEEcCCCEEEEEECC--EEE---EEEEEeecCC--CccccCCC-CCCEEEEEeHHHHHHHHH
Confidence 887777753 1 3444444322233333222 122 3444443333 332 1112 455789999999999999
Q ss_pred HhcCCC--CeEEEEEecCCCcEEEEEee--ce-EEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccC
Q 022104 168 DLEWPG--SSIQIKLQPVPPSVSFKGEG--HG-DLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKH 242 (302)
Q Consensus 168 dL~~~s--d~v~i~~~p~~~~~~~s~~G--~G-~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~ 242 (302)
.....+ +.+.+.+. ++.+++++.+ .| .++-.+|. .++ .++.+-.|..+||..+.|++.
T Consensus 273 rv~~~~~~~~v~~~~~--~~~l~l~~~~~~~g~~~~e~i~~--------~~~-G~~~~I~fN~~yl~d~L~~~~------ 335 (374)
T PRK14941 273 RVGRFSSIGDIKISVE--GSVLKVMAENTNEGESAQEELPC--------SYT-GEDITIGFNSKFIEAALAHLD------ 335 (374)
T ss_pred HHHHHccCCceEEEEE--CCEEEEEEECcccccceEEEEEe--------EeC-CCcEEEEEcHHHHHHHHhcCC------
Confidence 886543 35777776 6789998877 66 56655651 111 257888999999999999984
Q ss_pred CcceEEEE---cCCceEEEE
Q 022104 243 NRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 243 ~~~~~V~i---~~~g~L~~q 259 (302)
+.+|.| +...|..++
T Consensus 336 --~~~v~l~~~~~~~p~~i~ 353 (374)
T PRK14941 336 --EEEIIIELSSPTTAVIFK 353 (374)
T ss_pred --CCEEEEEECCCCCCEEEe
Confidence 377877 556776443
No 30
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=97.44 E-value=0.092 Score=50.42 Aligned_cols=209 Identities=11% Similarity=0.173 Sum_probs=133.4
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+.+.|.++|+.+.+. +. .-+.|+++++.|++...|+|.+ ...+.++ ..++. +..+-|+-..|
T Consensus 129 i~~~~l~~~i~~v~~a~s~~~~~~~L~gv~l~~~~~~l~l~aTDg~rla~~~~~~~------~~~~~--~~~~ivp~k~l 200 (374)
T PRK14943 129 LEQSELRDMLKSVEYAQSTDETRYILNGVYFNFRDGKLTLVATDGRRLALAETELE------FPEDQ--AGDAILPAKTV 200 (374)
T ss_pred ECHHHHHHHHhhEeEEeccCcCCcceEEEEEEEeCCEEEEEEecchhEEEEEeccC------CCCCc--CceEEEehhHH
Confidence 4778899999888742 12 2478888888899998887764 3333332 12221 24567888889
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCC-CCeE--EEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDS-PDAC--IYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKE 164 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~-~~~~--~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~ 164 (302)
.++++++.. + ..+++.+.+....+.+..++. ...| .....++.+-+-| ++. ..+. +...++.+....|++
T Consensus 201 ~~l~~~l~~-~--~~V~i~~~~~~~~f~~~~~~~~~~~~~~~~~~~~li~g~fP--~y~~vip~-~~~~~~~i~~~~l~~ 274 (374)
T PRK14943 201 GELRRLLDK-G--GKLKIRFNDRQAAFEISIGEDSSGLANDTYLISKLVEGNYP--NYRQVIPK-ETKERIKLERELLLE 274 (374)
T ss_pred HHHHHhCCC-C--CcEEEEEeCCEEEEEEeccccccccCCCEEEEEEEeeecCC--ChHHhCCC-CCCeEEEEEHHHHHH
Confidence 999999863 2 458888877655555532210 0000 1123344443333 322 1122 345689999999999
Q ss_pred HHHHhcCCC----CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCC
Q 022104 165 AIDDLEWPG----SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGC 238 (302)
Q Consensus 165 a~~dL~~~s----d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS 238 (302)
+++.....+ ..|.+.+. ++.+.+++.. .|+++-+++. .++ .++.+-.|..+||..++|++.
T Consensus 275 al~r~~~~~~~~~~~v~l~~~--~~~l~i~~~~~e~G~~~e~i~~--------~~~-G~~~~i~fN~~yl~d~l~~~~-- 341 (374)
T PRK14943 275 CVHRAALVSSDKSNSVKLKFS--ENLLEIASSSEGVGEAHESMAI--------TYS-GPELQVAFNPDFFMAPLKALT-- 341 (374)
T ss_pred HHHHHHhhcccCCceEEEEEE--CCEEEEEEcCCCCceEEEEEEE--------Eec-CCcEEEEECHHHHHHHHhcCC--
Confidence 999875432 24677776 6789998876 7887666651 121 257889999999999999985
Q ss_pred cccCCcceEEEE---cCCceEEEE
Q 022104 239 VIKHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 239 ~~~~~~~~~V~i---~~~g~L~~q 259 (302)
...|++ +...|..++
T Consensus 342 ------~~~v~l~~~~~~~p~~i~ 359 (374)
T PRK14943 342 ------KDEVFFELKDEMSPGVFK 359 (374)
T ss_pred ------CCEEEEEECCCCCCEEEe
Confidence 256776 557777554
No 31
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=97.33 E-value=0.0055 Score=49.25 Aligned_cols=91 Identities=8% Similarity=0.253 Sum_probs=70.3
Q ss_pred CccEEEEEehHHHHHHHHHhcCCC----CeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEE
Q 022104 150 STPLTFTVKSAALKEAIDDLEWPG----SSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRY 223 (302)
Q Consensus 150 ~~~~~v~m~s~~l~~a~~dL~~~s----d~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y 223 (302)
++..++.+....|.+|++-+...+ ..|.+.++ ++.+.+++.+ .|+++-.++. ..+ .++++-.|
T Consensus 7 ~~~~~i~i~r~~L~~al~Rv~~~~~~~~~~v~l~~~--~~~l~l~~~~~~~g~~~e~i~~--------~~~-g~~~~i~f 75 (121)
T PF02768_consen 7 EFETSITIDRKELLDALKRVSIISSEKNNPVKLSFS--DNQLTLSSQSSEIGEAEEEIPI--------EYE-GEPLEIAF 75 (121)
T ss_dssp SESEEEEEEHHHHHHHHHHHHHHHTTTTGEEEEEEE--TTEEEEEEEETTTEEEEEEEE---------EEE-ES-EEEEE
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHhhcCCceEEEEEE--CCEEEEEEcCCCCceEEEEEee--------eec-CCceEEEE
Confidence 456799999999999999997644 36888888 7899999987 8999888872 122 57889999
Q ss_pred ehhhHHHhhccCCCCcccCCcceEEEE---cCCceEEEE
Q 022104 224 KYKFLRATTSNLPGCVIKHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 224 ~l~yL~~~~KAl~lS~~~~~~~~~V~i---~~~g~L~~q 259 (302)
.-+||..+.|++. ...|.| +..+|..++
T Consensus 76 N~~yL~d~L~~~~--------~~~V~l~~~~~~~p~~i~ 106 (121)
T PF02768_consen 76 NPKYLLDALKAID--------GEEVTLEFSDPSSPILIT 106 (121)
T ss_dssp EHHHHHHHHHCC---------SSEEEEEESSTTS-EEEE
T ss_pred CHHHHHHHHhhcC--------CCEEEEEEcCCCCCEEEE
Confidence 9999999999995 367777 667787443
No 32
>PF00705 PCNA_N: Proliferating cell nuclear antigen, N-terminal domain; InterPro: IPR022648 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1U76_E 2ZVK_B 1VYJ_A 1UL1_B 3P87_D 2ZVM_C 2ZVL_A 1AXC_C 3VKX_A 3TBL_B ....
Probab=97.12 E-value=0.032 Score=45.64 Aligned_cols=98 Identities=10% Similarity=0.174 Sum_probs=77.8
Q ss_pred EEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++.+ .+..|+.++.-|...-+.+.|.++ +.|+++.+-. +.-+.+.+| ++.+++++|++++.....++.|.
T Consensus 3 ea~~~~a~~~K~i~eal~~lv~e~~f~~~--~~Gi~~~amD~s~Valv~l~l~----~~~F~~Y~~d~~~~igvnl~~l~ 76 (127)
T PF00705_consen 3 EAKFSDASLFKKIFEALKDLVDEANFEFT--EDGISLQAMDPSHVALVDLELP----SEAFEEYRCDKELSIGVNLSDLK 76 (127)
T ss_dssp EEEESSHHHHHHHHHHHTTTCSEEEEEEE--SSEEEEEEE-TTSSEEEEEEEE----GGGSSEEEESSSEEEEEEHHHHH
T ss_pred EEEEcchHHHHHHHHHHHHHhhEEEEEEc--cCCEEEEEECCCcEEEEEEEec----hhcceEEEcCCCEEEEEEHHHHH
Confidence 4455 578999999999999999999999 6799999877 567788888 57899999999999999999999
Q ss_pred HhhccCCCCcccCCcceEEEE-cCCceEEEEEEEee
Q 022104 230 ATTSNLPGCVIKHNRGSKLII-GRGGMLKVQHLVSV 264 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i-~~~g~L~~q~~i~~ 264 (302)
+++|.+. ..+++.| -.+++-.+.+.+..
T Consensus 77 kiLk~~~-------~~D~l~l~~~~~~~~l~i~~~~ 105 (127)
T PF00705_consen 77 KILKRAK-------KDDSLELESDEEPDKLNIVFEN 105 (127)
T ss_dssp HHHTTSS-------TTSEEEEEEESSSSEEEEEEEE
T ss_pred HHHhhcc-------CCCEEEEEEeCCCCEEEEEEEc
Confidence 9999985 4588888 22333333344443
No 33
>PRK01115 DNA polymerase sliding clamp; Validated
Probab=97.03 E-value=0.014 Score=52.73 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=78.7
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEE-EcCcEEEEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIV-EETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~v-d~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
++...+.+. .+.|.++++-+. +.+. +.+.+++++++|.. .+ ..+...+..+++.|.+|++++ +++.++|+.-
T Consensus 129 ~~~~~i~~~-~~~l~~~~~r~~~~~~~--v~i~~~~~~l~lsa~~~-g~a~~~i~~~~~~~~~~~g~e--~~~i~fn~~Y 202 (247)
T PRK01115 129 ELPVKAVIL-GDDLKDAIKDAELVSDH--IELEADEDKFYIEAEGE-GEDEVELSLDSGPLIELSVEE--PAKSSYSLDY 202 (247)
T ss_pred cccEEEEEE-HHHHHHHHHHHHhcCCe--EEEEEeCCEEEEEEEeC-CceEEEEecCCCceEEEEecC--ceeEEEhHHH
Confidence 344455544 489999999998 6666 99999999999984 45 777888888899999999963 5899999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCC-CeEEEEE
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGP-DMQLLVK 118 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le 118 (302)
|.++||.+... +.++|+..+. |+.|...
T Consensus 203 L~d~lk~~~~~---~~V~l~~~~~~P~~l~~~ 231 (247)
T PRK01115 203 LKDMVKATSAS---DEVTIEFGSDMPLKLEFE 231 (247)
T ss_pred HHHhhccccCC---CeEEEEECCCCCEEEEEE
Confidence 99999998742 4677777554 7777653
No 34
>cd00140 beta_clamp Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric ring formed by PCNA (found in eukaryotes and archaea) and the processivity factor (found in bacteriophages T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds.
Probab=96.97 E-value=0.099 Score=49.51 Aligned_cols=166 Identities=12% Similarity=0.104 Sum_probs=108.2
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+.+++.++||++..-|++.. +...++.+. +. + +..+-|+-..|.+.++.+.. ..+++...+..+.+..
T Consensus 33 vl~e~~~~~l~~~atd~~~~-~~~~~~~~~-----~~-~-~g~~~vp~k~l~~i~k~l~~----~~v~i~~~~~~l~i~~ 100 (365)
T cd00140 33 VLIEASDGGLTLTATDLEIS-IKTTIPAEE-----VE-E-EGSVTVPAKKLLDIVRKLPD----EEVTLETEENRLTIKS 100 (365)
T ss_pred EEEEEECCEEEEEEecceEE-EEEEEecee-----cc-c-CeEEEEEhHHHHHHHHhCCC----CcEEEEEcCCEEEEEE
Confidence 67899999999997777644 233444431 33 2 46799999999999999973 3588888775444443
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcC-CCC--------eEEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEW-PGS--------SIQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~-~sd--------~v~i~~~p~~~~~~ 188 (302)
++ ..+.+++++.+.. +++... +...++.++...|.++++.... .+. -|.|.+. +++++
T Consensus 101 --g~-----~~~~~~~~~~~~f-P~~~~~---~~~~~~~i~~~~l~~~l~~v~~~~~~~~~~~~l~gI~~~~~--~~~l~ 167 (365)
T cd00140 101 --GK-----SRFSLNTLPAEEF-PELPEI---ENGSSFTIPASELKELIKKTAFAVSTDETRPILNGVLLEIE--DNKLR 167 (365)
T ss_pred --Cc-----EEEEEcCCCHHHC-CCCCCC---CCCcEEEECHHHHHHHHhhEEEEecCccCcccceEEEEEEE--CCEEE
Confidence 22 2347888875432 344442 2335889999999999998864 222 2556655 67888
Q ss_pred EEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 189 FKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 189 ~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+.+.- ...+...++.... ..++....+..+||..+.|.++
T Consensus 168 l~atD~~~~~~~~~~~~~~--------~~~~~~~~i~~~~l~~l~k~l~ 208 (365)
T cd00140 168 AVATDGHRLALREIELESG--------AEEDFNVIVPRKTLNELLKLLE 208 (365)
T ss_pred EEEEcCceEEEEEeecCCC--------CccCceEEEechHHHHHHHhcc
Confidence 87665 3333333331010 1235566899999999999985
No 35
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=96.62 E-value=0.7 Score=44.51 Aligned_cols=199 Identities=12% Similarity=0.119 Sum_probs=126.7
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++...|. ++ .-+.+++.++.|++..-|+|-+ .....+.. + . +..+=|+-..|
T Consensus 130 i~~~~l~~~i~kt~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLA~~~~~~~~--------~-~-~~~~iIP~k~l 199 (366)
T PRK14946 130 VNAKNLKRAIKNTAFATTNNPNQPILSAINLKSEDNFLHFSATDTIRFASEKIEISN--------P-S-RIDISISAKNL 199 (366)
T ss_pred ECHHHHHHHHhhEEEEEeCCCCcccceEEEEEEeCCEEEEEEecchheEEEEeccCC--------C-C-cceEEEeccCH
Confidence 5678899999888754 11 2267788888899998888744 55544421 1 1 23455667777
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc--cCCCCCccEEEEEehHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN--FEPAGSTPLTFTVKSAALKEAI 166 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~--f~~~~~~~~~v~m~s~~l~~a~ 166 (302)
.+. +.... +..++|.+.+..+.+.++ + ... ..++++-.-| ++. +....+...++.+....|.+++
T Consensus 200 ~el--l~~~~--~~~v~i~~~~~~i~f~~~--~--~~~---~srLieG~fP--dy~~viP~~~~~~~~~~i~r~~l~~al 266 (366)
T PRK14946 200 KDF--IPPEL--DKDIELFIESSKISYTYD--N--LTI---QSRIFTIEYK--DISNVLPKDSEILYSLTIEKKEILDLI 266 (366)
T ss_pred HHH--hcccC--CCcEEEEEeCCEEEEEEC--C--EEE---EEEEecccCC--CHHHhCCCCCCccEEEEEEHHHHHHHH
Confidence 776 43321 246778777655444432 2 222 5566665543 332 2211113368999999999999
Q ss_pred HHhcCCC-C---eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 167 DDLEWPG-S---SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 167 ~dL~~~s-d---~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
+-+...+ + .|.+.++ ++.+.+++.. .|+++.+++ .. ..++ .++++-.|-.+||..+.|++.
T Consensus 267 ~Rvsl~a~~~~~~v~l~~~--~~~l~lss~~~e~G~a~e~i~--~~----~~~~-Ge~~~IafN~~YL~D~L~~i~---- 333 (366)
T PRK14946 267 DKATIITPGKDNVINFSLS--KNELKGYISQYESGQSNVKTK--NV----LRFS-GELAQVNVNYKYLKDAISVFD---- 333 (366)
T ss_pred HHhheeecCCCceEEEEEc--CCEEEEEEECCCCceEEEEec--cc----cccc-CCcEEEEEcHHHHHHHHHhCC----
Confidence 9987754 2 3677776 6789998777 899887763 00 1111 257888999999999999985
Q ss_pred cCCcceEEEE---cCCceEE
Q 022104 241 KHNRGSKLII---GRGGMLK 257 (302)
Q Consensus 241 ~~~~~~~V~i---~~~g~L~ 257 (302)
+.|.| +...|..
T Consensus 334 -----~~v~l~~~~~~~p~~ 348 (366)
T PRK14946 334 -----KVINIFINEKKTKML 348 (366)
T ss_pred -----CeEEEEECCCCCCEE
Confidence 44777 4456653
No 36
>COG0592 DnaN DNA polymerase sliding clamp subunit (PCNA homolog) [DNA replication, recombination, and repair]
Probab=95.75 E-value=2 Score=41.29 Aligned_cols=200 Identities=12% Similarity=0.095 Sum_probs=119.3
Q ss_pred CChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCC-CcceEEEEchhHHHHHHhCC
Q 022104 18 DNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQ-GRPRFGVSLGLFADCLNTFS 96 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~-~~~~fgInL~~L~~~L~~f~ 96 (302)
-+...|+++++.+.|.+.. -...-.-+|+.+..++...-.+..--++=.-.+...... .+..+-|+-..+.+.+|++.
T Consensus 130 l~~~~Lk~ii~~~~fa~~~-~e~~~~lngv~~~i~~~~l~~vatd~~rla~~~~~~~~~~~~~~viIp~k~l~el~k~~~ 208 (364)
T COG0592 130 LPTELLKKIIKRTKFADSL-LETRYELNGVLLEIEGTKLRLVATDGHRLAVEELEIPELEEDASVIIPAKTLKELIKLLK 208 (364)
T ss_pred ecHHHHHHHHhheeecccc-hhhhhhcccEEEEEECCEEEEEEECCceEEEEEeccccCCCCccEEEEhhHHHHHHHhCC
Confidence 4678999999999987631 122233345555554442222322222222222322211 12568899999999999987
Q ss_pred CCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC---C
Q 022104 97 APGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP---G 173 (302)
Q Consensus 97 ~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~---s 173 (302)
..+ +.+...++.+.+...+ . .. ..+..+-+-| ++..--+.+...++.+....|+++++-.... .
T Consensus 209 d~~----~~~~~~sd~i~f~~~~--~--~~---~s~lieG~fp--d~~~vip~~~~~~~~l~~~el~~al~r~~~l~~~~ 275 (364)
T COG0592 209 DAD----VEIFLVSDQIRFKAGE--T--IL---FSKLIEGEFP--DYERVIPKEFEKELTLDRLELKEALKRVYSLSYLK 275 (364)
T ss_pred CCC----eEEEEcCCeEEEEECC--E--EE---EEEEecccCC--ChhhcCCCCCceEEEEeHHHHHHHHHHHHHHHhcc
Confidence 422 6666666666665542 1 11 3344444433 2221111244568899999999999976543 2
Q ss_pred C-eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE
Q 022104 174 S-SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 174 d-~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i 250 (302)
+ .+.+... .+.+++++.. .|.++-+++ .+.. .++.+-.|-..|+....|+++ +..|.+
T Consensus 276 ~~~~~~~~~--~~~v~i~~~~~~~g~~~eei~--~~~~-------g~~~~I~fn~~ylld~l~~~~--------~~~v~~ 336 (364)
T COG0592 276 DRGKKLSLA--DGEVKLSLGNDEPGKAEEEID--VGYT-------GEELKIGFNLAYLLDVLKALD--------SEEVQF 336 (364)
T ss_pred cCceEEEee--CCeEEEEecCCCccceEEEEE--eccC-------CceEEEEECHHHHHHHHhcCC--------CCeEEE
Confidence 2 3344433 3577787766 687777776 2111 467888999999999999996 377777
No 37
>cd00577 PCNA Proliferating Cell Nuclear Antigen (PCNA) domain found in eukaryotes and archaea. These polymerase processivity factors play a role in DNA replication and repair. PCNA encircles duplex DNA in its central cavity, providing a DNA-bound platform for the attachment of the polymerase. The trimeric PCNA ring is structurally similar to the dimeric ring formed by the DNA polymerase processivity factors in bacteria (beta subunit DNA polymerase III holoenzyme) and in bacteriophages (catalytic subunits in T4 and RB69). This structural correspondence further substantiates the mechanistic connection between eukaryotic and prokaryotic DNA replication that has been suggested on biochemical grounds. PCNA is also involved with proteins involved in cell cycle processes such as DNA repair and apoptosis. Many of these proteins contain a highly conserved motif known as the PIP-box (PCNA interacting protein box) which contains the sequence Qxx[LIM]xxF[FY].
Probab=95.68 E-value=0.29 Score=43.49 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=73.4
Q ss_pred ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhcc
Q 022104 158 KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSN 234 (302)
Q Consensus 158 ~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KA 234 (302)
..+.|+++++.++...+.+.+.+. +++++|.+.. ++-+++.++ .+.+..++|..+.+...+++.|..+.|.
T Consensus 5 ~~~~l~~~~~~l~~i~~~v~~~~~--~~gl~~~a~d~~r~~~~~~~l~----~~~F~~y~~~~~~~~~i~~k~l~~~lk~ 78 (248)
T cd00577 5 NAKLLKKIVDALSKLVDEANFDIT--EDGISLQAMDSSHVALVSLFLP----KELFEEYRCDEEISLGVNLKSLLKILKC 78 (248)
T ss_pred chHHHHHHHHHHHHHhcEEeEEEC--CCceEEEEEcCCcEEEEEEEec----hhhCeEEecCCceEEEEEHHHHHHHHhh
Confidence 467899999999999999999888 5689999866 366677776 3567788998888999999999999999
Q ss_pred CCCCcccCCcceEEEE--cCCceEEEEEEE
Q 022104 235 LPGCVIKHNRGSKLII--GRGGMLKVQHLV 262 (302)
Q Consensus 235 l~lS~~~~~~~~~V~i--~~~g~L~~q~~i 262 (302)
+.- .+.|.| +.+.++.+++..
T Consensus 79 ~~~-------~~~v~i~~~~~~~l~i~~~~ 101 (248)
T cd00577 79 AGN-------EDCVTLRADDEDPLKILFES 101 (248)
T ss_pred CCC-------CCEEEEEecCCCeEEEEEEc
Confidence 853 356666 444678887764
No 38
>PF02747 PCNA_C: Proliferating cell nuclear antigen, C-terminal domain; InterPro: IPR022649 Proliferating cell nuclear antigen (PCNA), or cyclin, is a non-histone acidic nuclear protein [] that plays a key role in the control of eukaryotic DNA replication []. It acts as a co-factor for DNA polymerase delta, which is responsible for leading strand DNA replication []. The sequence of PCNA is well conserved between plants and animals, indicating a strong selective pressure for structure conservation, and suggesting that this type of DNA replication mechanism is conserved throughout eukaryotes []. In Saccharomyces cerevisiae (Baker's yeast), POL30, is associated with polymerase III, the yeast analog of polymerase delta. Homologues of PCNA have also been identified in the archaea (Euryarchaeota and Crenarchaeota) and in Paramecium bursaria Chlorella virus 1 (PBCV-1) and in nuclear polyhedrosis viruses. ; GO: 0003677 DNA binding, 0030337 DNA polymerase processivity factor activity, 0006275 regulation of DNA replication, 0043626 PCNA complex; PDB: 1IZ5_A 1IZ4_A 1GE8_A 1ISQ_A 3A2F_B 1RWZ_A 3P83_A 1RXM_A 1RXZ_A 1SXJ_F ....
Probab=95.49 E-value=0.35 Score=39.37 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=71.8
Q ss_pred ChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEE-cCcEEEEEE-----EecccCceeEEeCCCCcceEEEEchhHHHH
Q 022104 19 NVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVE-ETGCLQAKV-----YLQRELFVRYEYSAQGRPRFGVSLGLFADC 91 (302)
Q Consensus 19 ~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd-~s~~~~~~~-----~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~ 91 (302)
....|+++++.+. +.|. +.+.++++++.|.++ +...+.+.+ .-..+.--+.++++ +++-..+|.-|.++
T Consensus 14 ~S~~f~~~~kdl~~v~d~--v~i~~~~~~~~f~~~Gd~~~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~fsl~YL~~~ 89 (128)
T PF02747_consen 14 PSSEFKKICKDLSSVGDT--VTISADKDSVIFSAEGDIGSAEVEFKETESSEDDEELIEIEVKE--PVSSSFSLDYLNDF 89 (128)
T ss_dssp EHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEEESSEEEEEEEEEEEEETTCTCESEEEESS--EEEEEEEHHHHHHH
T ss_pred EHHHHHHHHHHHHhcCCE--EEEEEeCCEEEEEEEeccCcEEEEEeeccccccccccceeeecc--ceeeEEeHHHHHhh
Confidence 4678899999988 7777 999999999999976 433322222 12345556677773 68889999999999
Q ss_pred HHhCCCCCCceEEEEEEcCC-CeEEEEEECC
Q 022104 92 LNTFSAPGHSSLIEIRYPGP-DMQLLVKSVD 121 (302)
Q Consensus 92 L~~f~~~~~~~~l~l~y~g~-~l~l~le~~~ 121 (302)
.|..+.+ +.++|....+ |+.|.++-.+
T Consensus 90 ~Ka~~ls---~~V~l~l~~~~Pl~l~f~~~~ 117 (128)
T PF02747_consen 90 SKAAPLS---DEVTLELGEDMPLKLEFELAD 117 (128)
T ss_dssp GGGGGTT---SEEEEEEETTSEEEEEEEETT
T ss_pred hccccCC---ceEEEEEcCCCCEEEEEEeCC
Confidence 9987642 5799999766 9999888655
No 39
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=0.26 Score=45.16 Aligned_cols=95 Identities=8% Similarity=0.145 Sum_probs=75.2
Q ss_pred EEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++.+ .+..|+.++.-+...-+.++|.++ +.|+++.+-- +--+.+.+| ++.+++++|+++++....+..|.
T Consensus 3 ea~~~~a~~~k~i~eai~~lv~e~~~~~t--~~Gi~~~amD~s~Valv~l~l~----~~~F~~Y~~d~~~~~gv~l~~l~ 76 (259)
T TIGR00590 3 EARLEQASLLKKILEAIKDLVNDANFDCS--ESGISLQAMDSSHVSLVSLTLR----SEGFDTYRCDRNLALGVNLTSLS 76 (259)
T ss_pred EEEEccHHHHHHHHHHHHHHhceeeEEEC--CCeEEEEEEcCCcEEEEEEEcC----HHhCceEecCCceEEEEEHHHHH
Confidence 4455 457999999999999999999998 5699999655 445566666 57899999999998999999999
Q ss_pred HhhccCCCCcccCCcceEEEE---cCCceEEEEEE
Q 022104 230 ATTSNLPGCVIKHNRGSKLII---GRGGMLKVQHL 261 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i---~~~g~L~~q~~ 261 (302)
+++|... ..+.+.| +....|.+.|.
T Consensus 77 kiLk~~~-------~~d~l~l~~~~~~~~l~i~~~ 104 (259)
T TIGR00590 77 KILKCAN-------NEDIVTLKAEDNADTLILVFE 104 (259)
T ss_pred HHHhccC-------CCCEEEEEecCCCCEEEEEEE
Confidence 9999875 4588888 23457766654
No 40
>PLN00057 proliferating cell nuclear antigen; Provisional
Probab=95.36 E-value=0.46 Score=43.61 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=69.4
Q ss_pred EEEEe-hHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTVK-SAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m~-s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++++. +..|+.++.-+...-+.++|.++ +.|+++.+-- +--+.+.+| ++.+++++|+++++....+..|.
T Consensus 3 ~a~~~~a~~~k~i~~ai~~lvde~~~~~t--~~Gi~~~amD~s~Valv~l~l~----~~~F~eY~~d~~~~~gv~l~~l~ 76 (263)
T PLN00057 3 EARLVQGSLLKKVLEAIKDLVSDANFDCS--ETGLSLQAMDSSHVALVALLLR----ADGFEHYRCDRNLSMGINLANMS 76 (263)
T ss_pred EEEEcchHHHHHHHHHHHHHhheeEEEEc--CCeEEEEEEcCCcEEEEEEEeC----hhcCeEEecCCceEEEEEHHHHH
Confidence 44554 47999999999999999999999 5699999655 455677777 57899999999988899999999
Q ss_pred HhhccCCCCcccCCcceEEEE
Q 022104 230 ATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i 250 (302)
+++|-.. ..+++.|
T Consensus 77 kiLk~~~-------~~d~l~l 90 (263)
T PLN00057 77 KILKCAG-------NDDIITI 90 (263)
T ss_pred HHHhccC-------CCCEEEE
Confidence 9999874 5588888
No 41
>PF04139 Rad9: Rad9; InterPro: IPR007268 Rad9 is required for transient cell-cycle arrests and transcriptional induction of DNA repair in response to DNA damage.; GO: 0006281 DNA repair; PDB: 3GGR_A 3G65_A 3A1J_A.
Probab=95.29 E-value=0.19 Score=45.62 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=71.8
Q ss_pred CChHHHHHHhcccccceeeeEEEEEeCCccEEE--EE---cC-cEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHH
Q 022104 18 DNVQGLVDALSAVRWKRHQDAVIELSEHGIILI--VE---ET-GCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADC 91 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~--vd---~s-~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~ 91 (302)
-+++.|+++|.-..-+ .+++++.++.+-+.++ .+ +. +.++.++.|..+=|++|.+.. +..+.++|..|.-.
T Consensus 135 ~~~~~l~~~l~~f~~~-~eeitl~~~~~~v~~~s~~~~~~~~~~~l~t~v~i~~~ef~~~~~~~--~~~itF~lKefka~ 211 (252)
T PF04139_consen 135 ISPRLLKDLLDHFPSS-TEEITLEVTDDKVSFKSYTEEIQDSKQPLSTEVTISTEEFDEYNVQE--DTDITFSLKEFKAI 211 (252)
T ss_dssp EEHHHHHHHHTTS-TT---EEEEEEECTCEEEEEE-----SSS---EEEEEE-GGGSSEEE--T--T-EEEEEHHHHHHH
T ss_pred EChHHHHHHHhhcCCC-hhhEEEEecCCEEEEEeecccccccccceEEEEEEehHhcceEEcCC--CCEEEEEeHHHHHH
Confidence 5789999999977622 2359999999999888 33 23 688999999999999999984 48899999999999
Q ss_pred HHhCCCCCCceEEEEEE--cCCCeEEEEEECCCCCeEEEEEEEe
Q 022104 92 LNTFSAPGHSSLIEIRY--PGPDMQLLVKSVDSPDACIYAEVRT 133 (302)
Q Consensus 92 L~~f~~~~~~~~l~l~y--~g~~l~l~le~~~~~~~~~~~~i~t 133 (302)
|..+...+ ..+.+.| +|.|+.+.++..+. ...++-+.|
T Consensus 212 l~~ae~~~--~~i~~~f~~pG~Pi~~~~~~~~~--~~~~~vlaT 251 (252)
T PF04139_consen 212 LSFAESLS--LPISIYFDNPGRPILFELEQNDH--FEAEFVLAT 251 (252)
T ss_dssp HHHHHHTT--EEEEEEESSTTS-EEEEEE--SS--EEEEEEE--
T ss_pred HHHHHhcC--CcEEEEECCCCCcEEEEECCCCc--EEEEEEEEc
Confidence 99886434 4555655 67899999885332 223445544
No 42
>PTZ00113 proliferating cell nuclear antigen; Provisional
Probab=95.28 E-value=0.45 Score=44.09 Aligned_cols=97 Identities=8% Similarity=0.133 Sum_probs=76.6
Q ss_pred EEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++.+ .+..|++++.-|...-+.+.|.++ +.++++.+-- +.-+.+.+| ++.++++.|+++++.-..+..|.
T Consensus 3 ea~~~~a~~~K~i~eal~~lv~e~~f~~t--~~Gi~lqamD~shVaLv~l~l~----~~~FeeY~cd~~~~lGvn~~~l~ 76 (275)
T PTZ00113 3 EAKLNNASVLRRLFECIKDLVSDGNIDFD--ETGLKLQALDGNHVALVHLKLH----DSGFSHYRCDRERALGINIASVT 76 (275)
T ss_pred EEEeccHHHHHHHHHHHHHHhceEEEEEC--CCeEEEEEECCCcEEEEEEEeC----HHhCeEEecCCCcEEEEEHHHHH
Confidence 4555 457999999999999999999998 5699999765 566677887 57899999999999999999999
Q ss_pred HhhccCCCCcccCCcceEEEEc-CCceEEEEEEEe
Q 022104 230 ATTSNLPGCVIKHNRGSKLIIG-RGGMLKVQHLVS 263 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i~-~~g~L~~q~~i~ 263 (302)
+++|-.. +.++|.+. .+.+=.+.+.+.
T Consensus 77 KILk~~~-------~~D~l~l~~~~~~~~l~i~~~ 104 (275)
T PTZ00113 77 KVFKLCS-------NNDSVLIQSEEDKDNINFVFE 104 (275)
T ss_pred HHHHhCC-------CCCEEEEEEcCCCCEEEEEEE
Confidence 9999874 56888882 333333444444
No 43
>PHA03383 PCNA-like protein; Provisional
Probab=95.12 E-value=0.7 Score=42.49 Aligned_cols=94 Identities=11% Similarity=0.179 Sum_probs=75.0
Q ss_pred EEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++.+ .+..||+++.-+...-+.+.|.++ +.++++.+-- +.-+.+.+| ++.++.++|+++.+.-..+..|.
T Consensus 9 e~~~~~a~~~K~iieai~~lv~e~~f~~t--~~Gi~lqamD~shVaLv~l~L~----~~~F~~Y~~d~~~~iGv~~~~l~ 82 (262)
T PHA03383 9 HIRTIQGSVIKSLFDVLKEILHDVNIFFR--PTGVYISALDGAKVSLVHMKLD----AESFEEYHCDQTYEIGVNVSNMF 82 (262)
T ss_pred EEEecchHHHHHHHHHHHHHhceEEEEEC--CCcEEEEEECCCcEEEEEEEeC----HHhCceEecCCceEEEEEHHHHH
Confidence 4454 678999999999999999999998 5699999765 455677777 57899999999998899999999
Q ss_pred HhhccCCCCcccCCcceEEEEc--C--CceEEEEE
Q 022104 230 ATTSNLPGCVIKHNRGSKLIIG--R--GGMLKVQH 260 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i~--~--~g~L~~q~ 260 (302)
+++|-.. +.++|.+. + ...|.+.|
T Consensus 83 KILk~a~-------~~D~l~l~~~~~~~~~l~i~~ 110 (262)
T PHA03383 83 KLLRTAG-------SHDSILFRYLKNSPHFLEITI 110 (262)
T ss_pred HHHhccC-------CCCEEEEEecCCCCCEEEEEE
Confidence 9999874 55888873 2 33555544
No 44
>PTZ00483 proliferating cell nuclear antigen; Provisional
Probab=95.11 E-value=0.32 Score=44.79 Aligned_cols=84 Identities=11% Similarity=0.241 Sum_probs=71.7
Q ss_pred EEEEehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHH
Q 022104 154 TFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRA 230 (302)
Q Consensus 154 ~v~m~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~ 230 (302)
++.+.+..||+++.-+...-+.+.|.++ +.++++.+-- +.-+.+.+| ++.++++.|+++..--..+..|.+
T Consensus 3 ea~~~a~~lK~i~eai~~lv~e~~f~~~--e~Gi~lqAmD~shVaLV~l~L~----~~~Fe~Y~cd~~~~lGinl~~l~K 76 (264)
T PTZ00483 3 ECRLDGMFLRRLFETLKDICTDVSIDCS--ENGLKMQAMDNSHISLIHLNLA----PDFFQLYRCDKPCVLGLNISFMLK 76 (264)
T ss_pred EEEEeHHHHHHHHHHHHHHhheeEEEEC--CCcEEEEEECCCcEEEEEEEcC----HHhCeEEecCCCeEEEEEHHHHHH
Confidence 5566789999999999999999999998 5699999765 566777787 578999999999888899999999
Q ss_pred hhccCCCCcccCCcceEEEE
Q 022104 231 TTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 231 ~~KAl~lS~~~~~~~~~V~i 250 (302)
++|-.. +.+.|.|
T Consensus 77 iLk~a~-------~~D~l~l 89 (264)
T PTZ00483 77 ILSVVK-------EKSTIYL 89 (264)
T ss_pred HHhhcC-------CCCEEEE
Confidence 999875 5578877
No 45
>smart00480 POL3Bc DNA polymerase III beta subunit.
Probab=94.68 E-value=4 Score=38.60 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=96.3
Q ss_pred EEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEEE
Q 022104 39 VIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVK 118 (302)
Q Consensus 39 ~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le 118 (302)
-+++.+++|+++.-|... .+...++.+ +..+ +.++-|+-..|.++++.+.. ..+++...+.. +.+.
T Consensus 18 ll~a~~~~l~l~atd~e~-~i~~~i~~~------~~~~-~G~~~v~a~~l~~ivk~lp~----~~i~~~~~~~~--l~i~ 83 (345)
T smart00480 18 LLEAKDDGLTLTATDLEI-SIKSSISAE------VEDE-EGSVTVPAKKFLDIVRKLPD----KEITLSVEEDK--LVIT 83 (345)
T ss_pred EEEEECCEEEEEEECCce-EEEEEEEee------EccC-CeEEEEEhHHHHHHHHhCCC----CceEEEEcCCE--EEEE
Confidence 366677788888555442 222333321 2201 46899999999999999863 35788887653 4444
Q ss_pred ECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC-C-Ce-------EEEEEecCCCcEEE
Q 022104 119 SVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP-G-SS-------IQIKLQPVPPSVSF 189 (302)
Q Consensus 119 ~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~-s-d~-------v~i~~~p~~~~~~~ 189 (302)
.+. ..+.|.++++++. ++++.. +...++.++...|+++++-.... + +. |.|.+. ++.+.+
T Consensus 84 ~~~-----~~~~l~~~~~~~f-P~~~~~---~~~~~~~i~~~~L~~~i~~v~~a~s~~~~~piL~Gi~~~~~--~~~l~l 152 (345)
T smart00480 84 SGK-----SRFNLPTLDAEEF-PELPFI---EEGVTFELPTKLLKEGIEKTAFAVSTDETRPVLNGVNLEIS--NGELRL 152 (345)
T ss_pred ECc-----EEEEecCCCHHHC-CCCCCc---CCCcEEEECHHHHHHHHhhEEEEEecCCCcceeeEEEEEEE--CCEEEE
Confidence 222 3458999988653 344332 23358899999999999987542 2 21 223332 445555
Q ss_pred EEe-eceEEEEEEeccCCCCcEEEEEeC-cceEEEEehhhHHHhhccCC
Q 022104 190 KGE-GHGDLQIDFMYYVNTDLLIAFHCD-REVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 190 s~~-G~G~~~i~~~~~~~s~~l~~f~~~-e~v~~~Y~l~yL~~~~KAl~ 236 (302)
.+. |.=-+...++. +.. ++.....+.+.|..+.|.++
T Consensus 153 vATDg~rla~~~~~~----------~~~~~~~~~ivP~k~l~el~k~l~ 191 (345)
T smart00480 153 VATDGHRLAVREIKL----------ESEEDDFSVIIPRKSLLELNKLLT 191 (345)
T ss_pred EEEcCceEEEEEecc----------CCCCCcceEEEehHHHHHHHHhcc
Confidence 543 21111222220 111 13566888899999999986
No 46
>PRK14945 DNA polymerase III subunit beta; Provisional
Probab=94.30 E-value=5.1 Score=38.23 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=99.0
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.++++.|+.-|.... +...++.+ +. + +.++-|+-..|.++++-+.. ..+++..++. .+.+
T Consensus 33 ili~a~~~~l~l~atd~~~~-i~~~i~~~------i~-~-~G~~~v~ak~l~~ivk~lp~----~~i~~~~~~~--~l~i 97 (362)
T PRK14945 33 LKVELSEGGLTLSGTNGEVD-LEVTLPAE------VQ-G-PGRVVVPAHLFFQIVRNLPG----ELVELEFQGG--ELEV 97 (362)
T ss_pred EEEEEeCCEEEEEEECCcEE-EEEEEeee------ec-c-CeEEEEEccCHHHHHHhCCC----CcEEEEEcCC--EEEE
Confidence 66888888899996654422 23334432 33 2 57899999999999999863 3577777644 4444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC--CCe-------EEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP--GSS-------IQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~--sd~-------v~i~~~p~~~~~~ 188 (302)
..+. ..++|.++++++. +++.+... ..+.++.+.|+++++..... .+. |.+... +++++
T Consensus 98 ~~~~-----~~~~l~~~~~~~f-P~~~~~~~----~~~~i~~~~L~~~i~~v~~avs~~~~~piL~gv~l~~~--~~~l~ 165 (362)
T PRK14945 98 RSGS-----SRTKLQTAPPEGY-PELSFPSQ----GDVRLSAGELAKALTHVRYAASNEEFQAIFRGVKLEHS--PQGLR 165 (362)
T ss_pred EECC-----EEEEeccCChHHC-CCCCCCCC----ceEEECHHHHHHHHhhEEEEEecccchhheeeEEEEEe--CCEEE
Confidence 4322 2459999988763 35444322 24689999999999988642 222 333332 45566
Q ss_pred EEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 189 FKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 189 ~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+.|.- .=-+...++ .++.++....-+-+.|..+.|.++
T Consensus 166 lvATDg~rla~~~~~----------~~~~~~~~~iip~k~l~el~k~l~ 204 (362)
T PRK14945 166 AVASDGYRLAIYDLP----------ASQGQGRKLVIPARSADELVRVLK 204 (362)
T ss_pred EEEEccceEEEEEec----------cCCCCCceEEEEHHHHHHHHHhcC
Confidence 65443 111222222 112234556777788999999886
No 47
>PRK05643 DNA polymerase III subunit beta; Validated
Probab=93.71 E-value=6.5 Score=37.37 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=98.1
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|+++.-|++.. +...++.+. . + + +.++-|+-..|.++++.+.. + ..+++...+.. .+.+
T Consensus 33 ili~~~~~~l~l~atd~~~~-~~~~~~~~~--~--~-~--~G~~~v~~k~l~eiik~l~~-~--~~i~i~~~~~~-~l~i 100 (367)
T PRK05643 33 VLIEAEGGKLSLTATDLEIS-IETTIPAEV--E--V-E--EGSITVPAKKLLDIVRKLPD-G--AEITLELEENN-RLTI 100 (367)
T ss_pred EEEEEeCCEEEEEEECcceE-EEEEEEeeE--c--c-c--CeEEEEEhHHHHHHHHcCCC-C--CcEEEEECCCC-EEEE
Confidence 66788888899997776533 233333221 1 1 2 35789999999999998863 2 36888875432 4444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC--CCe-------EEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP--GSS-------IQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~--sd~-------v~i~~~p~~~~~~ 188 (302)
..+. ..+.+.++++++. ++++.. +...++.++.+.|.++++..... .+. |.|.+. ++++.
T Consensus 101 ~~~~-----~~~~l~~~~~~~f-P~~~~~---~~~~~~~i~~~~l~~~i~~v~~a~~~~~~~piL~gi~~~~~--~~~l~ 169 (367)
T PRK05643 101 KSGK-----SRFNLPTLPAEDF-PNLPEI---EEEVSFTLPQKTLKRLIEKTQFAMSTQETRYYLNGVLLEIE--GNELR 169 (367)
T ss_pred EECC-----EEEEeccCCHHHC-CCCCCC---CCCcEEEECHHHHHHHHhheeEEeecCCccccccEEEEEEe--CCEEE
Confidence 4322 2358888887542 243332 22357899999999999987531 221 333333 45565
Q ss_pred EEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 189 FKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 189 ~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+.|.- +....+.+. . +. .++.....+-+.|..+.|.++
T Consensus 170 l~aTD~~rl~~~~~~~~--~--~~------~~~~~~~vp~k~l~ei~k~l~ 210 (367)
T PRK05643 170 AVATDGHRLAVRKLELE--E--GS------LGDFSVIIPRKTLLELQKLLD 210 (367)
T ss_pred EEEeccceeEEEEeccc--C--Cc------ccCceEEEchHHHHHHHHhcC
Confidence 55432 122222221 0 00 023456778889999999885
No 48
>PRK07761 DNA polymerase III subunit beta; Validated
Probab=92.51 E-value=10 Score=36.34 Aligned_cols=163 Identities=17% Similarity=0.157 Sum_probs=98.7
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|+|+.-|.. +.+...++. .+.+ +.++.|+-..|.++++.+.. ..+++..++.. +.+
T Consensus 33 iliea~~~~l~l~atd~~-~~i~~~i~~------~i~~--~G~~~v~~k~l~~iik~lp~----~~i~~~~~~~~--l~I 97 (376)
T PRK07761 33 VLLEADDGGLTLSGFDYE-VSARVTIEA------EVDE--PGRVLVSGRLLADITRSLPN----KPVDISVDGSR--VTL 97 (376)
T ss_pred eEEEEeCCEEEEEEECcc-EEEEEEEEe------Eecc--CceEEEEHHHHHHHHHhCCC----CcEEEEEcCCE--EEE
Confidence 678888888999966643 334444443 2442 57899999999999999863 35777777553 444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC--CCe-------EEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP--GSS-------IQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~--sd~-------v~i~~~p~~~~~~ 188 (302)
..+. ..+.|.++++++. ++++..+. ....++...|+++++-.... .+. |.+.+. .+.++
T Consensus 98 ~~~~-----~~~~l~~~~~~~f-P~~~~~~~----~~~~i~~~~L~~~i~~v~~a~s~~~~~piL~gV~l~~~--~~~L~ 165 (376)
T PRK07761 98 TCGS-----ARFTLPTMPVEDY-PTLPELPE----ATGTVDADAFAEAVSQVAVAAGRDDTLPMLTGVRVEIE--GDTVT 165 (376)
T ss_pred EECc-----eEEEecCCCHHHC-CCCCCCCC----cceEECHHHHHHHHhhEeEEEEcccchhhhceEEEEEe--CCEEE
Confidence 4222 2458999987652 24433221 23489999999999987542 121 333332 44555
Q ss_pred EEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 189 FKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 189 ~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+.|.- ++-.++.+. . -.+.++.....+-+.|..+.|.++
T Consensus 166 l~ATDg~rLa~~~~~~~---~------~~~~~~~~~iIP~k~l~ei~k~l~ 207 (376)
T PRK07761 166 LAATDRYRLAVRELTWK---P------ASPDISAAALVPARTLSDTAKSLG 207 (376)
T ss_pred EEEECCceEEEEEeccC---C------CCCCcceeEEEEhHHHHHHHHhcC
Confidence 55432 121111111 0 012234566788899999999986
No 49
>PF02768 DNA_pol3_beta_3: DNA polymerase III beta subunit, C-terminal domain; InterPro: IPR022635 This entry describes the C-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D 2POL_A ....
Probab=92.17 E-value=1.3 Score=35.28 Aligned_cols=90 Identities=16% Similarity=0.316 Sum_probs=59.1
Q ss_pred ChHHHHHHhcccc-cce--eeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhC
Q 022104 19 NVQGLVDALSAVR-WKR--HQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTF 95 (302)
Q Consensus 19 ~a~~l~~iL~aI~-~~d--~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f 95 (302)
+.+.|..+|+-+. +.+ ...+.+.++++.|++...+...-.+.-.++ -.|. . + ++.+++|-.-|+++|+.+
T Consensus 15 ~r~~L~~al~Rv~~~~~~~~~~v~l~~~~~~l~l~~~~~~~g~~~e~i~----~~~~-g-~-~~~i~fN~~yL~d~L~~~ 87 (121)
T PF02768_consen 15 DRKELLDALKRVSIISSEKNNPVKLSFSDNQLTLSSQSSEIGEAEEEIP----IEYE-G-E-PLEIAFNPKYLLDALKAI 87 (121)
T ss_dssp EHHHHHHHHHHHHHHHTTTTGEEEEEEETTEEEEEEEETTTEEEEEEEE-----EEE-E-S--EEEEEEHHHHHHHHHCC
T ss_pred EHHHHHHHHHHHHHHhhcCCceEEEEEECCEEEEEEcCCCCceEEEEEe----eeec-C-C-ceEEEECHHHHHHHHhhc
Confidence 4556666666666 443 345899999999999976443334444443 3344 2 3 699999999999999999
Q ss_pred CCCCCceEEEEEEcCCCeEEEEEE
Q 022104 96 SAPGHSSLIEIRYPGPDMQLLVKS 119 (302)
Q Consensus 96 ~~~~~~~~l~l~y~g~~l~l~le~ 119 (302)
.. +.++|...+..-.+++..
T Consensus 88 ~~----~~V~l~~~~~~~p~~i~~ 107 (121)
T PF02768_consen 88 DG----EEVTLEFSDPSSPILITP 107 (121)
T ss_dssp -S----SEEEEEESSTTS-EEEEE
T ss_pred CC----CEEEEEEcCCCCCEEEEe
Confidence 73 568888877633344443
No 50
>TIGR00663 dnan DNA polymerase III, beta subunit. University).
Probab=90.30 E-value=17 Score=34.57 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=101.2
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEec-ccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQ-RELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLL 116 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~-~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~ 116 (302)
+.+++.++||++..-|++... ...++ .+ +. + +.++-|+-..|.++++.+.. ..+++...+.. +.
T Consensus 33 vlle~~~~~l~l~atD~~~~~-~~~~~~~~------~~-~-~g~~~vp~k~l~ei~k~l~~----~~i~i~~~~~~--l~ 97 (367)
T TIGR00663 33 ILLEVKDDKLTITATDLDISL-ESQIFTIN------SE-Q-EGSVTINAKKFLDIVRALPD----SKITLEVKNDK--LA 97 (367)
T ss_pred EEEEEECCEEEEEEECCceEE-EEEEeccc------cc-c-CeEEEEEhHHHHHHHHhCCC----CceEEEEcCCE--EE
Confidence 778899999999977776442 22342 22 22 2 46789999999999999862 35778776654 44
Q ss_pred EEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC-C-C-------eEEEEEecCCCcE
Q 022104 117 VKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP-G-S-------SIQIKLQPVPPSV 187 (302)
Q Consensus 117 le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~-s-d-------~v~i~~~p~~~~~ 187 (302)
+..+. ..+.+++++.+.. ++++.... ...+.++...|+++++-.... + + -|.|.+. ++.+
T Consensus 98 i~~~~-----~~~~~~~l~~~~f-P~~~~~~~---~~~~~i~~~~l~~~i~~v~~a~~~~~~r~~L~gi~~~~~--~~~l 166 (367)
T TIGR00663 98 ITSEK-----SRFKLPTLSAEEF-PNLPTIEE---GVSIEIPSDVLKEAINQTAFAAGEDETRPVLNGVLIEQK--GKTL 166 (367)
T ss_pred EEECc-----EEEEecCCCHHHC-CCCCCcCC---CcEEEECHHHHHHHHhhEEEEEecCCCCcccceEEEEEe--CCEE
Confidence 44322 2358888886432 24433211 247899999999999987532 1 2 2555554 5667
Q ss_pred EEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 188 SFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 188 ~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
.+.+.. ++..++..+ . ...++.....+.+.|+.+.|.++
T Consensus 167 ~~~atDg~RLa~~~~~~~--~--------~~~~~~~~iiP~k~l~el~~~l~ 208 (367)
T TIGR00663 167 LLVATDGHRLAVCKLKSE--V--------SDEEDFSVIIPAKALNELLKLLS 208 (367)
T ss_pred EEEEecchheEEEecccc--C--------CCCccceEEEecHHHHHHHHHhc
Confidence 766543 333333222 0 01123456777889999888875
No 51
>PRK14943 DNA polymerase III subunit beta; Provisional
Probab=90.07 E-value=18 Score=34.57 Aligned_cols=131 Identities=9% Similarity=0.132 Sum_probs=83.2
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+.+++.+++|+++.-|++ ..+...++. .+.. +..+-|+-..|.++++.... ..+++...+.. .+.+
T Consensus 33 ill~~~~~~l~l~aTD~~-~~~~~~~~~------~~~~--~g~~~vpak~l~ei~k~l~~----~~i~i~~~~~~-~~~i 98 (374)
T PRK14943 33 VLIEAENGQISLTTTNLD-LGIRCVIKA------NVLR--EGTVTLPVKKLATIVRELPE----AEVQVDANQNN-QAKV 98 (374)
T ss_pred EEEEEECCEEEEEEECcc-EEEEEEEEe------eecc--CeEEEEEhHHHHHHHHhCCC----CceEEEEcCCC-eEEE
Confidence 778888888999988876 444445543 2332 46899999999999999863 35777765322 3444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC-C-C-------eEEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP-G-S-------SIQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~-s-d-------~v~i~~~p~~~~~~ 188 (302)
..++ ..+.+.+++.+.. ++++.. +...++.++.+.|+++++-.... + + -|.|.+. ++.++
T Consensus 99 ~~~~-----~~~~l~~l~~~~f-P~~p~~---~~~~~~~i~~~~l~~~i~~v~~a~s~~~~~~~L~gv~l~~~--~~~l~ 167 (374)
T PRK14943 99 ESGG-----SQFKIMGIPAEEF-PPLPSF---EQATVFQLEQSELRDMLKSVEYAQSTDETRYILNGVYFNFR--DGKLT 167 (374)
T ss_pred EECC-----EEEEEccCCHHHC-CCCCCC---CCCcEEEECHHHHHHHHhhEeEEeccCcCCcceEEEEEEEe--CCEEE
Confidence 4333 2347777765542 233221 22357899999999999988642 2 2 2455554 56777
Q ss_pred EEEee
Q 022104 189 FKGEG 193 (302)
Q Consensus 189 ~s~~G 193 (302)
+.+.-
T Consensus 168 l~aTD 172 (374)
T PRK14943 168 LVATD 172 (374)
T ss_pred EEEec
Confidence 77543
No 52
>PRK14947 DNA polymerase III subunit beta; Provisional
Probab=87.73 E-value=9.8 Score=36.84 Aligned_cols=111 Identities=12% Similarity=0.136 Sum_probs=71.4
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|.++.-|... .+...++. .+.+ +.++-|+-..|.+++|-+.. +.+++......-.+.+
T Consensus 33 ili~a~~~~L~l~atD~ei-~i~~~i~~------~i~e--~G~~~v~ak~l~divk~lp~----~~i~i~~~~~~~~l~I 99 (384)
T PRK14947 33 IWLKAEDGTLSIMSTDSNI-EFRGTYPA------EVTE--PGLAGVQGRAFVDLVRKLPP----GEITLKLDASSGNLLI 99 (384)
T ss_pred EEEEEECCEEEEEEECCcE-EEEEEEee------eecc--CeEEEEEhHHHHHHHHhCCC----CceEEEEeCCCCEEEE
Confidence 5677877788888655442 22333332 2442 57899999999999999864 3477776543223444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
..+. ..+.|.++++++. +.++.. +....+.+++..|+++++...
T Consensus 100 ~~g~-----s~f~l~~~~~~~f-P~~~~~---~~~~~~~i~~~~L~~~i~~t~ 143 (384)
T PRK14947 100 EQGR-----RKYKLPVNDPSWF-QNFSAF---PAEGAVVWSGDFLQELIDRIA 143 (384)
T ss_pred EECC-----eEEEEcCCCHHHC-CCCCCC---CCCcEEEECHHHHHHHHhhee
Confidence 4322 3458999998752 233221 122467899999999998774
No 53
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=85.62 E-value=35 Score=32.71 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=74.0
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|+|+.-|.. +.+...++. .+.+ +.++-|+-..|.++++.+.. ..+++...+.. +.+
T Consensus 33 ill~a~~~~l~l~atD~e-~~i~~~i~~------~i~e--~G~v~v~ak~l~~ivk~lp~----~~i~~~~~~~~--l~I 97 (367)
T PRK14940 33 VLLAAQDGSLTIKATDTK-VSFETSIPV------NILA--EGSTTVFCDKFVGILSSLPT----GEIELELCDEQ--LVI 97 (367)
T ss_pred EEEEEECCEEEEEEECCc-eEEEEEEEe------eecc--CeEEEEEhHHHHHHHHhCCC----CceEEEEcCCE--EEE
Confidence 557788888888866554 223334432 2442 57899999999999999853 35777776543 444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcC
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEW 171 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~ 171 (302)
..++.. +.+.|.++++++. +.++.. +....+.++...|+++++....
T Consensus 98 ~~~~~~---~~f~l~~~~~~~f-P~~~~~---~~~~~~~i~~~~L~~~i~~v~~ 144 (367)
T PRK14940 98 TPPNKK---ISFQLKTISHESF-PCFPEN---EGGVSFAIPTKDLREMINQTIF 144 (367)
T ss_pred EEcCCc---eEEEEccCChHHC-CCCCCC---CCCeEEEECHHHHHHHHhhEeE
Confidence 432212 3459999988753 344432 2235789999999999998853
No 54
>PRK14942 DNA polymerase III subunit beta; Provisional
Probab=83.05 E-value=22 Score=34.31 Aligned_cols=116 Identities=9% Similarity=0.076 Sum_probs=72.3
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEE-cCCCeEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRY-PGPDMQLL 116 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y-~g~~l~l~ 116 (302)
+-+++.+++|.++.-|.. +.+...++. .+.+ +.++-++-..|.++++-+...+ ..+++.. +.+...+.
T Consensus 33 ili~a~~~~l~l~atD~e-i~i~~~i~~------~i~e--~G~~~vpak~l~eivr~lp~~~--~~i~~~~~~~~~~~~~ 101 (373)
T PRK14942 33 LKIEAEEKEVFLSATDLE-ISIKTSVPA------TVGQ--KGTASLPAKQLSSFFKTIHFET--TLLSLEESDSESSIVY 101 (373)
T ss_pred EEEEEECCEEEEEEECCC-eEEEEEEee------eecc--CeEEEEEhHHHHHHHHhCCCCC--ceEEEEEccCCCCEEE
Confidence 557777777888865544 333344432 2543 5789999999999999985312 4577776 22222444
Q ss_pred EEE-CCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 117 VKS-VDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 117 le~-~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
+.. .|. .-..+.|.++++++. ++++.. +....+.+++..|+++++...
T Consensus 102 I~~~~~~--~~~~f~l~~~~~~df-P~~~~~---~~~~~~~i~~~~L~~~i~~t~ 150 (373)
T PRK14942 102 ITDASGK--NDYKSKISGMDAEEI-KTISKV---DESQVSSFPSQLINDMIRKTS 150 (373)
T ss_pred EEECCCC--CccEEEEccCCHHHC-CCCCCC---CCceEEEECHHHHHHHHhhEe
Confidence 442 221 002459999988752 233322 223467899999999999774
No 55
>PRK14946 DNA polymerase III subunit beta; Provisional
Probab=81.30 E-value=24 Score=33.92 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=72.1
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecc-cCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQR-ELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLL 116 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~-~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~ 116 (302)
+-+++.+++|+|+.-|.... +...++. +.. .+.+ +.++-|+-..|.++++-+. + . +++...+.. +.
T Consensus 32 iliea~~~~l~l~atD~ei~-i~~~i~~~~~~---~i~e--~G~~~v~ak~l~eIvk~lp--~--~-I~~~~~~~~--l~ 98 (366)
T PRK14946 32 FFLKLTRSGLFIISTNSELS-YKSFINKKDLI---EIND--VGSCLIDGVFLKNIIKKSD--N--Q-ISFELIGSE--LK 98 (366)
T ss_pred EEEEEECCeEEEEEECCcEE-EEEEEeCCcCc---eecc--CeEEEEEcHHHHHHHHcCC--C--c-EEEEEeCCE--EE
Confidence 55777888888886654422 3334442 111 1442 5789999999999999984 2 2 777766543 44
Q ss_pred EEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 117 VKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 117 le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
+..+. ..+.|.++++++. +.+++. +....+.+++..|+++++...
T Consensus 99 I~s~~-----s~f~l~~~~~~~f-P~~~~~---~~~~~~~i~~~~l~~~i~kt~ 143 (366)
T PRK14946 99 VFWED-----AQFSKTLRDSSFF-PEINFE---QKGIKLTVNAKNLKRAIKNTA 143 (366)
T ss_pred EEECc-----eEEEEcCCCHHHC-CCCCcc---cCCcEEEECHHHHHHHHhhEE
Confidence 44222 3458999998753 344432 223578999999999999874
No 56
>PRK06673 DNA polymerase III subunit beta; Validated
Probab=80.68 E-value=56 Score=31.45 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=73.4
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|.++.-|... .+...++.+.-+++.++-.++.++-++-..|.++++-... + +.+.-.+.. .+.+
T Consensus 33 ill~a~~~~l~l~atD~e~-~i~~~i~~~~~~~~~~~i~~~G~v~v~ak~l~~ivk~lp~----~-i~~~~~~~~-~l~I 105 (376)
T PRK06673 33 IKITADQSGITLIASNSNI-FIEKFIPSAIDDEQITTILQAGTIVVPAKYFIEIIKKMPS----D-IVIKSKNEQ-TITI 105 (376)
T ss_pred EEEEEcCCeEEEEEECCcE-EEEEEEecccccccccccccCEEEEEEhHHHHHHHHcCCC----C-cEEEECCCC-EEEE
Confidence 6678888889998666543 3445555444433322211247899999999999999863 2 445433222 3444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
..+. ..+.|.++++++. +.++.. +....+.+++..|+++++-.-
T Consensus 106 ~~~~-----~~f~l~~~~~~df-P~~~~~---~~~~~~~i~~~~L~~~i~kt~ 149 (376)
T PRK06673 106 QSGE-----ITLNLNGFPANEF-PNVPQI---DDHTEIQIETKQLIDAFKQTV 149 (376)
T ss_pred EECC-----EEEEEcCCCHHHC-CCCCCC---CCCceEEECHHHHHHHHhhEe
Confidence 4222 2459999988753 243332 223468899999999999774
No 57
>PRK14944 DNA polymerase III subunit beta; Provisional
Probab=77.67 E-value=47 Score=32.02 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=73.9
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+-+++.+++|.++.-|... .+...++.+. -.+.+ +.++-|+-..|.++++-+.. ..+.+...+.. .+.+
T Consensus 33 ili~a~~~~l~l~atD~ei-~i~~~i~~~~---~~v~e--~G~v~v~ak~l~~ivk~Lp~----~~I~~~~~~~~-~l~I 101 (375)
T PRK14944 33 LKIQTKKNFLILEANNGNI-AIKIEIKDES---LKIKK--EGKIACLGRYFIEIIKKIND----SLIKMTVMENN-FLVI 101 (375)
T ss_pred EEEEEECCEEEEEEECccE-EEEEEEeCCc---ceeec--ceEEEEehHhHHHHHHhCCC----CcEEEEEcCCC-EEEE
Confidence 5677888889999666543 3344555421 14543 47899999999999999852 35777664322 3444
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
..+. +.+.|.++++++. +.+++.. +....+.+++..|+++++...
T Consensus 102 ~s~~-----s~f~L~~~~~~~f-P~~~~~~--~~~~~~~i~~~~l~~~i~~t~ 146 (375)
T PRK14944 102 KTEF-----CEYKLKLMDLCNF-LELDFFF--EKKEFFEIKTHFFKKIIKEIN 146 (375)
T ss_pred EECc-----EEEEEcCCCHHHC-CCCCccc--CcCeEEEECHHHHHHHHhhee
Confidence 4222 3469999998763 3443311 122468999999999999875
No 58
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=76.37 E-value=19 Score=28.52 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred eEEEEEeCCccEEEEEcCc-EEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEE
Q 022104 37 DAVIELSEHGIILIVEETG-CLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQL 115 (302)
Q Consensus 37 ~a~~~is~~Gi~l~vd~s~-~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l 115 (302)
.+.+++.+++|.++.-|.. .++..+. .+.- . + +.++.|+-..|.++++-+.. + ..++|..++..+.+
T Consensus 32 ~ili~a~~~~l~l~atD~e~~i~~~i~--~~~~-----~-~-~G~~~v~ak~l~~ivk~lp~-~--~~I~i~~~~~~l~I 99 (120)
T PF00712_consen 32 NILIEAKDNKLTLTATDLEISIRTTIP--AEIE-----E-E-EGSILVPAKKLFDIVKKLPD-D--EEITIEVEENKLTI 99 (120)
T ss_dssp EEEEEEETTEEEEEEE-SSEEEEEEEE--TEEE-----E-E--EEEEEEHHHHHHHHHHSSS-T--SEEEEEEETTEEEE
T ss_pred cEEEEEeCCEEEEEEEcCeEEEEEEEe--ceee-----c-C-CeEEEEEhHHHHHHHHhCCC-C--CeEEEEEeCCEEEE
Confidence 4789999999999965543 3344333 3222 1 1 47899999999999999974 2 57888888855554
Q ss_pred EEEECCCCCeEEEEEEEecCCCC
Q 022104 116 LVKSVDSPDACIYAEVRTRIPDM 138 (302)
Q Consensus 116 ~le~~~~~~~~~~~~i~t~e~d~ 138 (302)
. .+. ..+.|.++++++
T Consensus 100 ~--~~~-----~~f~l~~~~~~d 115 (120)
T PF00712_consen 100 K--SGK-----SRFKLPTLDAED 115 (120)
T ss_dssp E--ETT-----EEEEEE-BEGGG
T ss_pred E--ECC-----EEEEEcCCCHHH
Confidence 4 222 355999998774
No 59
>PRK14941 DNA polymerase III subunit beta; Provisional
Probab=75.97 E-value=76 Score=30.43 Aligned_cols=165 Identities=7% Similarity=0.059 Sum_probs=95.1
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcC----CCe
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPG----PDM 113 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g----~~l 113 (302)
+-+++.+++|.++.-|... .+...++. .+.+ +.++-|+-..|.+++|.+.. ..+++..++ +.-
T Consensus 33 ill~a~~~~l~l~atD~e~-~i~~~i~~------~~~~--~G~~~v~a~~l~~ivk~lp~----~~i~~~~~~~~~~~~~ 99 (374)
T PRK14941 33 IHLTLENGKLTLFATDGEL-SITAKTEV------ESSD--SGNIGIRARTLQDFLRSMYD----TEVTFSIERQEISDHG 99 (374)
T ss_pred EEEEEECCEEEEEEECCCe-EEEEEEee------eecc--ceEEEEEhHHHHHHHHcCCC----CcEEEEEeccccCCCC
Confidence 5677888889998666542 23344442 2542 47899999999999999853 357777652 223
Q ss_pred EEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC--CCe-------EEEEEecCC
Q 022104 114 QLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP--GSS-------IQIKLQPVP 184 (302)
Q Consensus 114 ~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~--sd~-------v~i~~~p~~ 184 (302)
.+.+..+. ..+.|.++.++.| ++... +....+.++++.|+++++..... .+. |.+.+. +
T Consensus 100 ~l~I~~~~-----~~f~l~~~~~~~p--~~~~~---~~~~~~~i~~~~L~~~i~~v~~a~s~~~~rpiL~Gv~l~~~--~ 167 (374)
T PRK14941 100 TVHIATDK-----GRYKIPCLFESKP--EKQEK---NFDISLDLETSELLDLIQKTIFACSVDGMRPAMMGVLFELE--G 167 (374)
T ss_pred EEEEEECC-----EEEEeeccCcccC--CCcCC---CCceEEEECHHHHHHHHhheeEEEecccchhhhceEEEEEe--C
Confidence 44444222 3458888876654 33321 33468899999999999987532 222 344443 4
Q ss_pred CcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccC
Q 022104 185 PSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNL 235 (302)
Q Consensus 185 ~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl 235 (302)
+.+++.|.- .=-+..+++. .. .+.++.+..-+-+.|..+.|-+
T Consensus 168 ~~l~lvATDg~Rla~~~~~~--~~------~~~~~~~~iiP~k~l~el~kll 211 (374)
T PRK14941 168 NTITAVSTDGHRLVRCRKNS--SV------GVEEKQKIVVPARVLSILQKLA 211 (374)
T ss_pred CEEEEEEecCeeEEEEEecc--cC------CccccceEEechHHHHHHHHhC
Confidence 566666543 2222222320 00 1112345566667776554544
No 60
>PF02144 Rad1: Repair protein Rad1/Rec1/Rad17; InterPro: IPR003021 REC1 of Ustilago maydis plays a key role in regulating the genetic system of the fungus. REC1 mutants are very sensitive to UV light. Mutation leads to a complex phenotype with alterations in DNA repair, recombination, mutagenesis, meiosis and cell division []. The predicted product of the REC1 gene is a polypeptide of 522 amino acid residues with molecular mass 57kDa. The protein shows 3'--5' exonuclease activity, but only in cells over-expressing REC1 []. While it is distinguishable from the major bacterial nucleases, the protein has certain enzymatic features in common with epsilon, the proof-reading exonuclease subunit of Escherichia coli DNA polymerase III holoenzyme []. The rad1 gene of Schizosaccharomyces pombe comprises three exons and encodes a 37kDa protein that exhibits partial similarity to the REC1 gene of U. maydis []. The two genes share putative functional similarities in their respective organisms.; GO: 0003684 damaged DNA binding, 0008853 exodeoxyribonuclease III activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3G65_B 3GGR_C 3A1J_C.
Probab=74.42 E-value=71 Score=29.37 Aligned_cols=97 Identities=11% Similarity=0.134 Sum_probs=65.3
Q ss_pred ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEe-------------CcceEEE
Q 022104 158 KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHC-------------DREVSYR 222 (302)
Q Consensus 158 ~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~-------------~e~v~~~ 222 (302)
....|..+++-+.... .+++.++ +.+++|.++- .=.+.+-++ ++.+.++.+ .++++-.
T Consensus 8 ~~~~l~~lL~~I~~~~-~a~v~is--~~Gi~~~vE~~~~~qa~a~l~----k~LF~~Y~~~~~~~~~~~~~~~~~~~~F~ 80 (275)
T PF02144_consen 8 NVRHLYQLLKCIAFKN-KATVEIS--EDGIKFTVEDSKSIQASAFLD----KSLFSEYTFNPPPDADDDDEEEEDEVSFG 80 (275)
T ss_dssp -THHHHHHHHTT-SSS-EEEEEEE--TTEEEEEEEETTTEEEEEEEE----GGGSSEEEE------------SSS-EEEE
T ss_pred CHHHHHHHHHhcccCC-eEEEEEc--CCEEEEEEECCcEEEEEEEEC----hhhceEEEEeccccccccccCCCCceEEE
Confidence 3457888888887666 6888888 6799999886 445677776 467888888 3467777
Q ss_pred EehhhHHHhhccCCCCcccCC---------------cceEEEE---cCCceEEEEEE
Q 022104 223 YKYKFLRATTSNLPGCVIKHN---------------RGSKLII---GRGGMLKVQHL 261 (302)
Q Consensus 223 Y~l~yL~~~~KAl~lS~~~~~---------------~~~~V~i---~~~g~L~~q~~ 261 (302)
-+|..|..+......+..... ..+.++| +.+.||.+.+.
T Consensus 81 I~L~~LlecL~ifg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsY~g~G~pL~l~le 137 (275)
T PF02144_consen 81 INLSALLECLNIFGSSDSSSSSSSSGGDPSRNNASGEPTSCRLSYPGEGSPLVLILE 137 (275)
T ss_dssp EEHHHHHHHHTTT-SS--TT-----------------EEEEEEEESSSCCEEEEEEE
T ss_pred EEhHHHHHHHHHhCCCCCccccccccccccccccccCCceEEEEEcCCCCeEEEEEE
Confidence 888999999887765411000 0135666 67899988764
No 61
>KOG1636 consensus DNA polymerase delta processivity factor (proliferating cell nuclear antigen) [Replication, recombination and repair]
Probab=66.45 E-value=29 Score=31.32 Aligned_cols=92 Identities=11% Similarity=0.154 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee---ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 160 AALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG---HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 160 ~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G---~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+-|++++..+...=....|.++ ..++.+.+-- +.-+.+.+. ++.++++.|+.++..--.|.-|.++.|-+.
T Consensus 10 sLlKkIlealkdlV~~a~fdcs--e~GislQaMD~SHValvsl~l~----s~~F~~yRCDRnl~lG~~L~slsKiLkcan 83 (260)
T KOG1636|consen 10 SLLKKILEALKDLVNDANFDCS--ETGISLQAMDSSHVALVSLLLR----SEGFEKYRCDRNLSLGMNLKSLSKILKCAN 83 (260)
T ss_pred HHHHHHHHHHHHHHhccCcccc--cCceEEEEecccceEEEEEEee----ccccceeccCCccccccCHHHHHHHHcccc
Confidence 5566655555443344456666 5677777644 233444554 788999999999999999999999998774
Q ss_pred CCcccCCcceEEEE-cCCceEEEEEEEee
Q 022104 237 GCVIKHNRGSKLII-GRGGMLKVQHLVSV 264 (302)
Q Consensus 237 lS~~~~~~~~~V~i-~~~g~L~~q~~i~~ 264 (302)
+.+.+++ -++.|=.+.++++.
T Consensus 84 -------ned~~Tlkaed~~dti~l~fe~ 105 (260)
T KOG1636|consen 84 -------NEDTVTLKAEDNPDTITLMFES 105 (260)
T ss_pred -------CCCceEEEeecCCceEEEEEEC
Confidence 6788888 44677778888875
No 62
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=65.32 E-value=64 Score=25.22 Aligned_cols=88 Identities=14% Similarity=0.184 Sum_probs=59.8
Q ss_pred hHHHHHHhcccccc--e------eeeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhHHH
Q 022104 20 VQGLVDALSAVRWK--R------HQDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLFAD 90 (302)
Q Consensus 20 a~~l~~iL~aI~~~--d------~~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~ 90 (302)
++.|+++++.+.|. + -.-+.|++.++.|.+..-|+|-+ .....+..+..+ +..|-|+-..+.+
T Consensus 4 ~~~l~~~i~~v~fa~s~d~~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~~--------~~~~iIp~k~l~~ 75 (116)
T PF02767_consen 4 AKELKEAIKKVAFAASKDESRPILNGVLFEIENNKLRLVATDGHRLAVREIELDEENED--------EFSFIIPAKALKE 75 (116)
T ss_dssp HHHHHHHHHHHGGGS-SSTTSGGGGEEEEEEETTEEEEEEEESSEEEEEEEEEEEECES--------EEEEEEEHHHHHH
T ss_pred HHHHHHHHhheeEEEecCCCCceeeeEEEEEECCEEEEEEeCCceEEEEEEecCccccc--------ceEEEEechHHHH
Confidence 45666666655533 1 12388999999999997777654 555555443221 3678899999999
Q ss_pred HHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 91 CLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 91 ~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+.++++.. +..++|.+.+..+.+..
T Consensus 76 l~k~l~~~--~~~v~i~~~~~~i~f~~ 100 (116)
T PF02767_consen 76 LKKLLSDE--DEEVEISISDNQIIFKF 100 (116)
T ss_dssp HHHHSSTT--SSEEEEEEESSEEEEEE
T ss_pred HhhhcccC--CceEEEEEcCCEEEEEE
Confidence 99999762 26789988865555444
No 63
>PF04005 Hus1: Hus1-like protein; InterPro: IPR007150 Hus1, Rad1, and Rad9 are three evolutionarily conserved proteins required for checkpoint control in fission yeast. These proteins are known to form a stable complex in vivo []. Hus1-Rad1-Rad9 complex may form a PCNA-like ring structure, and could function as a sliding clamp during checkpoint control.; PDB: 3A1J_B 3G65_C 3GGR_B.
Probab=62.84 E-value=1.3e+02 Score=27.86 Aligned_cols=105 Identities=22% Similarity=0.322 Sum_probs=65.6
Q ss_pred chhHHHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHH
Q 022104 85 LGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKE 164 (302)
Q Consensus 85 L~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~ 164 (302)
...|.+++..+.+-+ -.|.|+...+.+.++.........-.+|++..-..-. +|..++..+..-.+.+..+.|.+
T Consensus 10 ~~~~~~~~~~~~kl~--k~~vlrlt~~~l~~i~~~~~~~g~qvw~~l~~~~~F~---~y~i~s~~~N~I~le~~~~~L~r 84 (292)
T PF04005_consen 10 IKLFKKFVSTISKLG--KRCVLRLTPERLHFISTSDDSDGIQVWCELPQDSLFS---EYRIQSASENEIYLEVNIDSLLR 84 (292)
T ss_dssp HHHHHHHHHHHHHH---SEEEEEE-SSEEEEEEE-SSTT--EEEEEEEGGGT-S---EEEEE-SSSS-EEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhh--CEEEEEEeCCEEEEEEecCCCCeEEEEEEEChhhcCc---ccEEEeCCCCEEEEEEcHHHHHH
Confidence 566777777765433 3578888888888887753333344688888654432 33333222233456779999999
Q ss_pred HHHHhcCCCCeEEEEEec--CCCcEEEEEee-ce
Q 022104 165 AIDDLEWPGSSIQIKLQP--VPPSVSFKGEG-HG 195 (302)
Q Consensus 165 a~~dL~~~sd~v~i~~~p--~~~~~~~s~~G-~G 195 (302)
|++-.+... .++|.... ..|.|.|..++ ..
T Consensus 85 aLrs~~~a~-~~~ikL~kk~~~p~L~~~~~~~~~ 117 (292)
T PF04005_consen 85 ALRSADNAS-SVKIKLTKKGRMPCLSFEITGTSS 117 (292)
T ss_dssp HHCTCSSCS-EEEEEEE-S-SSSEEEEEEEE--S
T ss_pred HHHhhccCc-eeEEehhhccCCcEEEEEEEeecc
Confidence 999998755 77777763 35899999988 54
No 64
>PHA02545 45 sliding clamp; Provisional
Probab=53.64 E-value=1.7e+02 Score=26.32 Aligned_cols=125 Identities=14% Similarity=0.188 Sum_probs=69.5
Q ss_pred EeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEE-EchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEEEEC
Q 022104 42 LSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGV-SLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSV 120 (302)
Q Consensus 42 is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgI-nL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~ 120 (302)
+.+.-.-.+...+.++.|.+.++-+ -+..|+| +|+.++.+|++++. + .. +....+ ..+.+.++
T Consensus 23 l~pGn~I~T~s~~~~~yAeAtI~d~----------fd~e~~IYDL~~FLsiL~l~~~-~--ae--i~~~~~-~~i~i~~~ 86 (223)
T PHA02545 23 LKPGNFIMTKSVNGVIYAEATIEDE----------FDSEFAIYDLNSFLSILSLVGD-D--AE--ITFDED-GNIVIRGG 86 (223)
T ss_pred ecCCCEEEEEecCceEEEEEeeccc----------ccceeeEeeHHHHHHHHhccCC-C--Ce--eEEccC-ceEEecCC
Confidence 3333333345566677776665532 2344655 79999999999973 2 22 344333 33443322
Q ss_pred CCCCeEEEEEEEecCCCC---ccCccccCCCCCccEEEEEehHHHHHHHHHhcCCC-CeEEEEEecCCCcEEEEEe
Q 022104 121 DSPDACIYAEVRTRIPDM---ISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPG-SSIQIKLQPVPPSVSFKGE 192 (302)
Q Consensus 121 ~~~~~~~~~~i~t~e~d~---~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~s-d~v~i~~~p~~~~~~~s~~ 192 (302)
+ +.- .+..-+++. |.-...|.+. ..++.++++.|+++.|--...+ +.+.|... .+++.+.+.
T Consensus 87 r--~ki---~~~~ad~~~Iv~P~k~i~~P~~---dv~f~L~aedl~ql~kas~~l~l~dl~~~~~--~G~ivi~~~ 152 (223)
T PHA02545 87 R--SKI---KYPYADPSTIVKPKKRVTFPVA---DVEFELKAEDLQQLLKASRVLGLDDLAITNI--DGKIVINLF 152 (223)
T ss_pred c--eEE---EEecCCCceEecCCcccCCCCc---cEEEEEcHHHHHHHHHHHHhcCCCeEEEEee--CCEEEEEEE
Confidence 2 122 222222222 2224455433 3678999999999999887765 66666543 566666653
No 65
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=41.21 E-value=1.7e+02 Score=22.89 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=56.7
Q ss_pred EEEEEehHHHHHHHHHhcCC-C--------CeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEE
Q 022104 153 LTFTVKSAALKEAIDDLEWP-G--------SSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYR 222 (302)
Q Consensus 153 ~~v~m~s~~l~~a~~dL~~~-s--------d~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~ 222 (302)
+|+++..+.|.+++.-+... + ..|.|.+. ++.+.|++.. -=..+..+|.. +. .++-+..
T Consensus 1 Mkf~i~k~~L~~~l~~v~~~i~~k~~~piL~~ili~a~--~~~l~l~atD~e~~i~~~i~~~------~~---~~~G~~~ 69 (120)
T PF00712_consen 1 MKFTINKEELLKALSKVSKVIPSKSTIPILSNILIEAK--DNKLTLTATDLEISIRTTIPAE------IE---EEEGSIL 69 (120)
T ss_dssp EEEEEEHHHHHHHHHHHHTCSSSSSSSGGGGEEEEEEE--TTEEEEEEE-SSEEEEEEEETE------EE---EE-EEEE
T ss_pred CEEEEEHHHHHHHHHHHHhhhCCCCChHHhccEEEEEe--CCEEEEEEEcCeEEEEEEEece------ee---cCCeEEE
Confidence 47899999999999998753 1 23667776 6789999887 44466666621 11 2456778
Q ss_pred EehhhHHHhhccCCCCcccCCcceEEEE
Q 022104 223 YKYKFLRATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 223 Y~l~yL~~~~KAl~lS~~~~~~~~~V~i 250 (302)
.+-++|..+.|.+|-. ..|.+
T Consensus 70 v~ak~l~~ivk~lp~~-------~~I~i 90 (120)
T PF00712_consen 70 VPAKKLFDIVKKLPDD-------EEITI 90 (120)
T ss_dssp EEHHHHHHHHHHSSST-------SEEEE
T ss_pred EEhHHHHHHHHhCCCC-------CeEEE
Confidence 8889999999999832 57777
No 66
>PF02767 DNA_pol3_beta_2: DNA polymerase III beta subunit, central domain; InterPro: IPR022637 This entry describes the central domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3T0P_B 3P16_A 3RB9_B 2AWA_C 1VPK_A 2AVT_B 2XUR_B 3Q4K_A 3BEP_A 3D1G_A ....
Probab=41.11 E-value=92 Score=24.31 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=33.9
Q ss_pred EEEEEehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee
Q 022104 153 LTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG 193 (302)
Q Consensus 153 ~~v~m~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G 193 (302)
..+++|...+.++.+-++...+.|+|..+ ++.+.|...+
T Consensus 64 ~~~iIp~k~l~~l~k~l~~~~~~v~i~~~--~~~i~f~~~~ 102 (116)
T PF02767_consen 64 FSFIIPAKALKELKKLLSDEDEEVEISIS--DNQIIFKFDN 102 (116)
T ss_dssp EEEEEEHHHHHHHHHHSSTTSSEEEEEEE--SSEEEEEESS
T ss_pred eEEEEechHHHHHhhhcccCCceEEEEEc--CCEEEEEECC
Confidence 47899999999999999887788999888 6788888765
No 67
>KOG3999 consensus Checkpoint 9-1-1 complex, HUS1 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=37.47 E-value=3.4e+02 Score=25.16 Aligned_cols=173 Identities=16% Similarity=0.215 Sum_probs=87.8
Q ss_pred chhHHHHHHhCCCCCCceEEEEEEcCCCeEEEEE-ECCCCCeEEEEEEEecCCCCccCccccCCC--CCccEEEEEehHH
Q 022104 85 LGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVK-SVDSPDACIYAEVRTRIPDMISWDYNFEPA--GSTPLTFTVKSAA 161 (302)
Q Consensus 85 L~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le-~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~--~~~~~~v~m~s~~ 161 (302)
+..+..+|..+.+-+. .|.|....+.+.+++- -.+......++.+.-...-. ||..... .+..-...+.+..
T Consensus 13 l~~f~ril~al~Kl~K--~C~l~l~~e~lnFI~c~~~~~~~~~~ws~~~~e~iF~---dy~m~s~~p~~e~I~L~v~~~n 87 (284)
T KOG3999|consen 13 LLLFTRILPALDKLGK--NCHLRLTKEHLNFIHCDLLDGGSVQVWSQLEKEVIFD---DYRMESQNPNNEEINLEVDSAN 87 (284)
T ss_pred HHHHHHHHHHHHHhhh--ceEEEecccceEEEEecccCCCceEEEEeeehhhcch---hheeeccCCCcceEEEEecHHH
Confidence 4556677776654342 2667776666776662 21111233355554332221 2222111 1223457899999
Q ss_pred HHHHHHHhcCCCCeEEEEEecC-CCcEEEEEee-ceEE------EEEEecc--CCCCcEEEEEeCcce-------EEEEe
Q 022104 162 LKEAIDDLEWPGSSIQIKLQPV-PPSVSFKGEG-HGDL------QIDFMYY--VNTDLLIAFHCDREV-------SYRYK 224 (302)
Q Consensus 162 l~~a~~dL~~~sd~v~i~~~p~-~~~~~~s~~G-~G~~------~i~~~~~--~~s~~l~~f~~~e~v-------~~~Y~ 224 (302)
|.+|++-+-.....++|..+.. .|.+..+++= .+++ .=++|-. ..+.. . +..+|. -..=.
T Consensus 88 l~rAlrs~~~g~~~lklKLskk~~p~~t~~~~~lt~~a~~s~iVtHdIPItii~~s~w-~--~~~~P~vp~~dl~I~lP~ 164 (284)
T KOG3999|consen 88 LYRALRSLVGGANRLKLKLSKKQFPCLTVSVEVLTFEAKGSRIVTHDIPITIISRSYW-S--EYQEPLVPAPDLSIQLPD 164 (284)
T ss_pred HHHHHHHhcCcccceEEEehhccCCCceeeeeeeccccccCceeEecCCeEEecHHHh-h--hhcCcCCCCCCcceeCCC
Confidence 9999999987677777777621 2333333332 2222 1122200 00000 0 011111 11223
Q ss_pred hhhHHHhh---ccCCCCcccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCC
Q 022104 225 YKFLRATT---SNLPGCVIKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHT 274 (302)
Q Consensus 225 l~yL~~~~---KAl~lS~~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~ 274 (302)
++.|+.+. |.+. +.+.+ +.+|-|.++-.++..|=+..++++
T Consensus 165 l~~lk~~vdk~Knis---------~~l~~tan~~GeLqv~v~~e~~~vtt~Fq~L 210 (284)
T KOG3999|consen 165 LNQLKSFVDKMKNIS---------DVLNVTANKSGELQVSVSIELIRVTTEFQDL 210 (284)
T ss_pred HHHHHHHHHHhhccc---------ceEEEEEecCceEEEEEEEeeEEEEEEhhhc
Confidence 45555554 5543 55555 889999999999876655555444
No 68
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=32.56 E-value=1.1e+02 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=23.9
Q ss_pred eeeeEEEEEeCCccEEEEEcCcEEEEEEEec
Q 022104 34 RHQDAVIELSEHGIILIVEETGCLQAKVYLQ 64 (302)
Q Consensus 34 d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~ 64 (302)
+.+.+.+.|+.+||++.-.+++.++.+-.|+
T Consensus 39 k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~ 69 (127)
T cd01274 39 TIPRVTLDLTCNGVKFIDETFKTLIDGHGIY 69 (127)
T ss_pred CCCEEEEEEeCCeEEEEECCCCeEEEEeeee
Confidence 3456999999999999977777776665443
No 69
>PF01203 T2SN: Type II secretion system (T2SS), protein N; InterPro: IPR022792 The secretion pathway (GSP) for the export of proteins (also called the type II pathway) [] requires a number of protein components. One of them is known as the 'N' protein and has been sequenced in a variety of bacteria such as Aeromonas hydrophila (gene exeN); Erwinia carotovora (gene outN); Klebsiella pneumoniae (gene pulN); or Vibrio cholerae (gene epsN). The size of the 'N' protein is around 250 amino acids. It apparently contains a single transmembrane domain located in the N-terminal section. The short N-terminal domain is predicted to be cytoplasmic and the large C-terminal domain periplasmic.
Probab=26.36 E-value=4.4e+02 Score=23.05 Aligned_cols=68 Identities=16% Similarity=0.309 Sum_probs=45.4
Q ss_pred EEEEEeCCccEEEE-EcCcEE--EEEEEecccCceeEEeCCCCcceEE---EEchhHHHHHHhCCCCCCceEEEEEEcCC
Q 022104 38 AVIELSEHGIILIV-EETGCL--QAKVYLQRELFVRYEYSAQGRPRFG---VSLGLFADCLNTFSAPGHSSLIEIRYPGP 111 (302)
Q Consensus 38 a~~~is~~Gi~l~v-d~s~~~--~~~~~l~~~~F~~Y~~~~~~~~~fg---InL~~L~~~L~~f~~~~~~~~l~l~y~g~ 111 (302)
+++.|.+.++.+.+ +.+..+ ...+.|.++ ..|+++ ..+. =-=..|...|+.+|..+......++|.|.
T Consensus 147 ~~l~c~~g~l~~~l~~~~g~l~l~g~~~l~~~--g~y~~~----~~~~p~~~~~~~l~~~L~~lG~~~~~g~~~~~~~Gr 220 (221)
T PF01203_consen 147 GDLSCQDGQLVLTLSDQSGPLQLDGQASLSPD--GRYRLD----GTVKPGASAPPALRQALAFLGFPDAQGRYPLRYQGR 220 (221)
T ss_pred EEEEecCCEEEEEEeCCCCceEEEEEEEEcCC--CeEEEE----EEEecCcCCCHHHHHHHHHcCCCCCCCeEEEEeccc
Confidence 88999998999996 555555 444444433 346554 1232 11367889999999776667888888873
No 70
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=20.97 E-value=1.6e+02 Score=24.41 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=27.9
Q ss_pred HHHHhcccccc--eeeeEEEEEeCCccEEEEEcCcEEEEEEEecc
Q 022104 23 LVDALSAVRWK--RHQDAVIELSEHGIILIVEETGCLQAKVYLQR 65 (302)
Q Consensus 23 l~~iL~aI~~~--d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~ 65 (302)
...+++.|+.. ..+.+.+.||.+||++.-..++.++.+..|++
T Consensus 35 ~~~A~~klk~~~~k~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ 79 (138)
T cd01268 35 CEDALKRLKASRRKPVKAVLWVSGDGLRVVDEKTKGLIVDQTIEK 79 (138)
T ss_pred HHHHHHHHHhhccCCCEEEEEEecCcEEEEecCCCcEEEEEeEEE
Confidence 33444444421 34569999999999998656666666655543
Done!