Query 022104
Match_columns 302
No_of_seqs 121 out of 388
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 14:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a1j_C Cell cycle checkpoint p 100.0 4.4E-56 1.5E-60 405.7 31.5 255 9-296 1-263 (263)
2 3fds_C DNA polymerase sliding 100.0 1.1E-47 3.6E-52 347.8 26.7 242 12-296 1-249 (249)
3 3k4x_A PCNA, proliferating cel 100.0 1.6E-45 5.3E-50 381.0 30.4 249 10-301 5-265 (798)
4 3p91_A Proliferating cell nucl 100.0 3.5E-45 1.2E-49 334.0 28.4 249 9-301 3-262 (265)
5 3lx2_A DNA polymerase sliding 100.0 4.4E-42 1.5E-46 312.5 30.4 243 12-299 2-251 (259)
6 3k4x_A PCNA, proliferating cel 100.0 9.1E-42 3.1E-46 352.9 31.7 250 10-300 539-798 (798)
7 3fds_D DNA polymerase sliding 100.0 5.4E-41 1.8E-45 302.9 29.2 239 12-296 1-245 (245)
8 3ifv_A PCNA; processivity fact 100.0 3.9E-41 1.3E-45 304.2 20.0 240 12-299 1-247 (247)
9 1plq_A Proliferating cell nucl 100.0 2.6E-37 8.8E-42 280.1 31.8 248 12-300 1-258 (258)
10 1u7b_A PCNA, cyclin, prolifera 100.0 1.5E-36 5.1E-41 275.4 32.0 250 12-301 1-260 (261)
11 2zvv_A PCNA 1, proliferating c 100.0 2.9E-35 9.9E-40 269.7 31.0 250 8-297 17-276 (276)
12 1iz5_A Proliferating cell nucl 100.0 3.1E-32 1.1E-36 245.5 30.5 242 12-298 2-249 (249)
13 3aiz_A DNA polymerase sliding 100.0 3.6E-32 1.2E-36 244.9 25.9 241 12-296 1-248 (248)
14 2ijx_A DNA polymerase sliding 100.0 1.1E-30 3.7E-35 234.7 29.1 239 13-296 1-244 (244)
15 1ud9_A DNA polymerase sliding 100.0 8.4E-31 2.9E-35 235.6 26.0 238 13-297 1-245 (245)
16 3aiz_C DNA polymerase sliding 100.0 1.1E-29 3.9E-34 228.3 28.2 238 12-297 2-246 (246)
17 1rwz_A DNA polymerase sliding 100.0 1.2E-29 4E-34 228.2 26.9 239 14-299 2-245 (245)
18 3a1j_A Cell cycle checkpoint c 100.0 2.2E-28 7.5E-33 223.0 23.6 244 13-294 3-264 (266)
19 3a1j_B HHUS1, checkpoint prote 100.0 6.1E-27 2.1E-31 215.1 28.8 247 12-293 3-278 (281)
20 3g65_A Cell cycle checkpoint c 99.8 3.2E-18 1.1E-22 158.0 21.3 250 13-300 3-270 (296)
21 3pge_A SUMO-modified prolifera 99.7 5.5E-16 1.9E-20 134.6 12.5 89 184-300 106-200 (200)
22 3l0w_B Monoubiquitinated proli 99.6 1.5E-14 5.1E-19 123.0 12.7 86 184-297 78-169 (169)
23 1vpk_A DNA polymerase III, bet 98.8 7.1E-07 2.4E-11 84.6 22.1 202 18-260 141-362 (378)
24 2avt_A DNA polymerase III beta 98.7 8.8E-06 3E-10 77.1 24.9 202 19-259 138-360 (378)
25 3d1g_A DNA polymerase III subu 98.6 8.6E-06 3E-10 76.8 23.4 202 18-259 130-350 (366)
26 3t0p_A DNA polymerase III, bet 98.4 0.00036 1.2E-08 65.8 26.5 202 19-259 131-351 (371)
27 3p16_A DNA polymerase III subu 98.0 0.0024 8.3E-08 60.9 24.1 205 18-259 145-372 (408)
28 3a1j_A Cell cycle checkpoint c 96.6 0.007 2.4E-07 54.2 8.9 97 18-120 147-254 (266)
29 3fds_C DNA polymerase sliding 96.6 0.025 8.6E-07 50.1 12.4 96 154-261 3-103 (249)
30 1iz5_A Proliferating cell nucl 96.4 0.3 1E-05 42.6 18.2 158 19-191 72-231 (249)
31 1vpk_A DNA polymerase III, bet 96.4 0.65 2.2E-05 43.3 24.1 162 38-236 45-218 (378)
32 3g65_A Cell cycle checkpoint c 96.3 0.013 4.5E-07 53.5 8.7 110 18-135 147-266 (296)
33 1u7b_A PCNA, cyclin, prolifera 96.0 0.066 2.3E-06 47.2 11.6 101 10-119 132-241 (261)
34 3a1j_C Cell cycle checkpoint p 95.8 0.22 7.7E-06 44.1 14.4 101 153-261 5-112 (263)
35 3fds_D DNA polymerase sliding 95.8 0.87 3E-05 39.7 18.2 151 19-185 72-224 (245)
36 2zvv_A PCNA 1, proliferating c 95.7 0.08 2.7E-06 47.3 10.9 100 11-119 153-261 (276)
37 3lx2_A DNA polymerase sliding 95.7 0.19 6.6E-06 44.4 13.3 103 10-120 129-235 (259)
38 1plq_A Proliferating cell nucl 95.6 0.9 3.1E-05 39.7 17.3 173 18-201 70-250 (258)
39 3p91_A Proliferating cell nucl 95.4 0.39 1.3E-05 42.6 14.4 96 153-261 7-109 (265)
40 2ijx_A DNA polymerase sliding 95.0 0.56 1.9E-05 40.7 14.1 156 19-191 70-228 (244)
41 1rwz_A DNA polymerase sliding 94.5 0.26 8.9E-06 43.0 10.4 98 11-118 127-226 (245)
42 3aiz_C DNA polymerase sliding 94.4 0.28 9.6E-06 42.7 10.5 99 11-119 128-231 (246)
43 3ifv_A PCNA; processivity fact 94.3 0.33 1.1E-05 42.6 10.6 100 11-120 127-230 (247)
44 1ud9_A DNA polymerase sliding 94.2 0.21 7.3E-06 43.4 9.3 98 12-118 129-229 (245)
45 3aiz_A DNA polymerase sliding 94.0 0.52 1.8E-05 41.0 11.4 99 11-118 132-233 (248)
46 3p16_A DNA polymerase III subu 90.6 11 0.00039 35.4 23.4 170 37-250 50-232 (408)
47 3a1j_B HHUS1, checkpoint prote 88.6 7.5 0.00026 34.6 13.0 101 10-116 154-265 (281)
48 3t0p_A DNA polymerase III, bet 82.7 30 0.001 31.9 25.2 164 37-236 33-208 (371)
49 3d1g_A DNA polymerase III subu 81.5 32 0.0011 31.5 17.4 151 20-192 197-352 (366)
50 2avt_A DNA polymerase III beta 72.0 61 0.0021 29.8 18.6 191 17-235 76-278 (378)
51 1dml_A DNA polymerase processi 64.1 83 0.0029 28.4 15.6 184 11-199 29-312 (319)
52 1b77_A GP45, protein (sliding 53.2 1.1E+02 0.0038 26.3 16.7 116 50-191 31-151 (228)
No 1
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=100.00 E-value=4.4e-56 Score=405.68 Aligned_cols=255 Identities=27% Similarity=0.533 Sum_probs=229.4
Q ss_pred CCCeEEEEECChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 9 ESPDLVCQLDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 9 ~~~~f~a~~~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
+++||+|++.+++.|+++|+||.|+++ |+|+|+++||+++++|+|++||+++|++++|++|+|+++ .++|||||+.|
T Consensus 1 ~~~~f~a~~~~a~~l~~il~ai~l~~e--a~~~~s~~Gi~l~a~Ds~v~~v~l~l~~~~F~~Y~~~~~-~~~~gi~l~~l 77 (263)
T 3a1j_C 1 DQYSLVASLDNVRNLSTILKAIHFREH--ATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEE-SVTFRINLTVL 77 (263)
T ss_dssp CCCSEEEEESCTHHHHHHHHTTCSSSE--EEEEEETTEEEEEEEETTTEEEEEEEEGGGSSEEEESSS-CEEEEEEHHHH
T ss_pred CCeEEEEEeCCHHHHHHHHhheecCcE--EEEEEcCCeEEEEEEeCCEEEEEEEECHHHCceEEEcCC-CcEEEEEhHHH
Confidence 468999999999999999999998888 999999999999965699999999999999999999942 38999999999
Q ss_pred HHHHHhCCCCC---CceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHH
Q 022104 89 ADCLNTFSAPG---HSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALK 163 (302)
Q Consensus 89 ~~~L~~f~~~~---~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~ 163 (302)
.|||++|++.+ ...+|+|+|++ +++.|.||+++..+.| +|+|++++.. ++++|+.. +..++|+|+|++|+
T Consensus 78 ~k~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~~~~~~~~---~l~~~~~~~~-~d~~f~~~-~~~~~v~m~s~~l~ 152 (263)
T 3a1j_C 78 LDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVC---KINTQEPEET-LDFDFCST-NVINKIILQSEGLR 152 (263)
T ss_dssp HHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEETTEEEEE---EECCBCCCCC-CCCCCCTT-TEEEEEEEEGGGGH
T ss_pred HHHHHHhcCCcCCCCceEEEEEECCCCCcEEEEEEeCCeEEEE---EEEEEcCCcc-cCcccCcc-cceEEEEEehHHHH
Confidence 99999998751 24689999977 4899999987755555 9999999874 68888876 88899999999999
Q ss_pred HHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccC
Q 022104 164 EAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKH 242 (302)
Q Consensus 164 ~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~ 242 (302)
+||+||+++|++|+|.++|++|+|+|+++| .|+++++|| ++++.+++|+|.+|++++|+++||++++||+++|
T Consensus 153 ~~~~dl~~~~d~v~i~~~~~~p~~~~~~~Gd~g~~~i~~~--~~~~~~~~~~~~~~~~~~y~l~yL~~~~ka~~~s---- 226 (263)
T 3a1j_C 153 EAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYP--KDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLS---- 226 (263)
T ss_dssp HHHHTSCTTSSEEEEEECSSSSSEEEEEEETTEEEEEEEC--TTCSSEEEEEECSCEEEEEEHHHHTTHHHHHHHC----
T ss_pred HHHHHHhccCCeEEEEEEcCCCEEEEEEEcCCccEEEEEc--CCCCeEEEEEeCChhhcEEeHHHHHHHHhhhhhc----
Confidence 999999999999999999877899999999 999999999 7788999999999999999999999999999988
Q ss_pred CcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 243 NRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 243 ~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
++|+| +.+|||++||+|.. ++|+.+||+|||||++
T Consensus 227 ---~~v~i~~~~~~pL~l~~~i~~----------------~~g~~~~v~f~laP~~ 263 (263)
T 3a1j_C 227 ---CKVSIRTDNRGFLSLQYMIRN----------------EDGQICFVEYYCCPDE 263 (263)
T ss_dssp ---SEEEEEEETTCCEEEEEEEEC----------------TTSCEEEEEEEECCCC
T ss_pred ---CEEEEEECCCeeEEEEEEEec----------------CCCCEEEEEEEEEECC
Confidence 55555 99999999999985 1366899999999985
No 2
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=100.00 E-value=1.1e-47 Score=347.81 Aligned_cols=242 Identities=12% Similarity=0.182 Sum_probs=211.5
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|+++++||+ +.++ |+|+|+++||+++ ||++|++||+++|++++|++|+|++ +++|||||+.|.
T Consensus 1 Mf~a~~~~a~~lk~ii~ai~~lv~e--~~~~~~~~Gi~l~amD~s~valv~l~l~~~~F~~Y~~d~--~~~~gvnl~~l~ 76 (249)
T 3fds_C 1 MVKIVYPNAKDFFSFINSITNVTDS--IILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDS--PTSVKLDVSSVK 76 (249)
T ss_dssp CCEEEESCHHHHHHHHHHHTTTCSS--EEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEECSS--CEEEEECHHHHH
T ss_pred CEEEEeCchHHHHHHHHHHHHHhCe--EEEEEcCCeEEEEEECCCcEEEEEEEECHHhCeEEECCC--CeEEEEEHHHHH
Confidence 79999999999999999998 8888 9999999999999 8999999999999999999999983 689999999999
Q ss_pred HHHHhCC-CCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 90 DCLNTFS-APGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 90 ~~L~~f~-~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
|||++++ + + +++++.-+++++.+.+|+.+.. ..+.+.|++++.+.. ++... ..++.++|+|+|+.|+++|+|
T Consensus 77 kiLk~~~~~-~--d~l~~~~~~~~l~i~~e~~~~~-~~~~~~l~l~d~~~e--~~~~p-~~e~~~~v~m~s~~f~~~~~d 149 (249)
T 3fds_C 77 KILSKASSK-K--ATIELTETDSGLKIIIRDEKSG-AKSTIYIKAEKGQVE--QLTEP-KVNLAVNFTTDESVLNVIAAD 149 (249)
T ss_dssp HHHTTCCCS-C--EEEEEEECSSEEEEEEEETTTC-CEEEEEEECEECCCC--CCCCC-CCCCCEEEEECHHHHHHHHHH
T ss_pred HHHHhhCCC-C--CEEEEecCCCEEEEEEEeCCCC-EEEEEEEECCCCccc--cCCCC-CCcceEEEEEEHHHHHHHHHH
Confidence 9999998 5 3 4666665666899999974322 224559999998763 33332 236779999999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhc-cCCCCcccCCcce
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTS-NLPGCVIKHNRGS 246 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~K-Al~lS~~~~~~~~ 246 (302)
|+.+||+|+|.++ +++++|++.| .|+.+++++ .+++ +++++|.+|++++|+++||+.++| |+++| +
T Consensus 150 l~~~sd~v~i~~~--~~~~~f~~~gd~~~~~~~~~--~~~~-l~~~~~~~~~~~~fsl~yL~~~~K~a~~ls-------~ 217 (249)
T 3fds_C 150 VTLVGEEMRISTE--EDKIKIEAGEEGKRYVAFLM--KDKP-LKELSIDTSASSSYSAEMFKDAVKGLRGFS-------A 217 (249)
T ss_dssp HHHHCSEEEEEEE--TTEEEEEEEETTEEEEEEEE--ETBE-ESEEEESSCCEEEEEHHHHHHHHHTTTTCC-------S
T ss_pred HHHhCCEEEEEEE--CCEEEEEEEecCcEEEEEEc--CCCC-cEEEEcCCceEEEEEHHHHHHHHhhhcccC-------C
Confidence 9999999999998 5699999999 999999998 5555 779999999999999999999999 99998 6
Q ss_pred EEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 247 KLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 247 ~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
+|+| ++++||+++|.|.. .|+|+||||||+
T Consensus 218 ~V~i~~~~~~Pl~l~y~i~~--------------------~G~l~f~lAPri 249 (249)
T 3fds_C 218 PTMVSFGENLPMKIDVEAVS--------------------GGHMIFWIAPRL 249 (249)
T ss_dssp CEEEEECTTCCEEEEEECTT--------------------SCEEEEEECCBC
T ss_pred EEEEEecCCcCEEEEEEeCC--------------------CcEEEEEEeccC
Confidence 7766 89999999999953 379999999986
No 3
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-45 Score=380.97 Aligned_cols=249 Identities=15% Similarity=0.195 Sum_probs=214.4
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
.+||+|++.+++.|+++++||+ +.++ |+|+|+++||+++ ||++||+|++++|++++|++|+|++ +++|||||+.
T Consensus 5 ~~Mf~a~~~~a~~~k~ii~ai~~lv~e--~~~~~t~~Gi~l~amD~s~v~lv~l~l~~~~F~~Y~~d~--~~~~Gvnl~~ 80 (798)
T 3k4x_A 5 ASMLEAKFEEASLFKRIIDGFKDCVQL--VNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDH--PVTLGMDLTS 80 (798)
T ss_dssp ---CEEEESCHHHHHHHHHHHTTTCSE--EEEEEETTEEEEEEECSSSCCEEEEEEEGGGSSEEECSS--CEEEEEEHHH
T ss_pred ceEEEEEecchHHHHHHHHHHHHHhce--EEEEEeCCeEEEEEECCCcEEEEEEEEChhhCeEEecCC--CeEEEEEHHH
Confidence 5799999999999999999998 8777 9999999999999 8899999999999999999999994 6999999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHH
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEA 165 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a 165 (302)
|.||||++++. +.|+|+|+++ ++.+.||+.+.. +.+.|.|++++++.. +++... .++.++|+|+|++|+++
T Consensus 81 l~kiLk~~~~~---d~l~l~~~~~~~~l~i~~e~~~~~-~~~~~~l~l~d~~~e--~l~ip~-~e~~~~v~m~s~~f~~~ 153 (798)
T 3k4x_A 81 LSKILRCGNNT---DTLTLIADNTPDSIILLFEDTKKD-RIAEYSLKLMDIDAD--FLKIEE-LQYDSTLSLPSSEFSKI 153 (798)
T ss_dssp HHHHHSSSCTT---SCEEEECCSSCSEEEEEEECSSSS-EEEEEEEECBCCCCC--CCCCCC-SCCSEEEEEEHHHHHHH
T ss_pred HHHHHhhcCCC---CEEEEEEcCCCCeEEEEEEeCCCc-eEEEEEEEeeccCcc--cCCCCC-CceeEEEEEEHHHHHHH
Confidence 99999999863 6799999754 799999977654 445779999999863 223222 25679999999999999
Q ss_pred HHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCC-----CcEEEEEeCcceEEEEehhhHHHhhccCCCCc
Q 022104 166 IDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNT-----DLLIAFHCDREVSYRYKYKFLRATTSNLPGCV 239 (302)
Q Consensus 166 ~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s-----~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~ 239 (302)
|+||+.+||+|+|.++ +++|+|++.| .|+++++++ +++ +.+++|+|++|++++|+++||+.++||+++|
T Consensus 154 ~~dl~~~sd~v~i~~~--~~~~~~s~~Gd~g~~~v~~~--~~~~~~~~~~~~~i~~~e~~~~~ysl~yL~~~~Ka~~ls- 228 (798)
T 3k4x_A 154 VRDLSQLSDSINIMIT--KETIKFVADGDIGSGSVIIK--PFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS- 228 (798)
T ss_dssp HHHHTTTCSEEEEEEE--TTEEEEEEECSSEEEEEEEC--CBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTC-
T ss_pred HHHHHhhCCEEEEEEE--CCEEEEEEEecCcEEEEEEc--CCCCCCCccceEEEEeCCceeEEEEHHHHHHhhcccccC-
Confidence 9999999999999998 5799999999 999999998 433 6789999999999999999999999999988
Q ss_pred ccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCCC
Q 022104 240 IKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDTI 301 (302)
Q Consensus 240 ~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~~ 301 (302)
++|+| ++++||++||+| . .|||+|||||++++||.
T Consensus 229 ------~~V~l~~~~~~PL~l~y~i-~--------------------~G~l~f~lAPri~~~~~ 265 (798)
T 3k4x_A 229 ------DRVGIRLSSEAPALFQFDL-K--------------------SGFLQFFLAPKFNDEGS 265 (798)
T ss_dssp ------SEEEEEECSSSCEEEEEEE-T--------------------TEEEEEEECCC------
T ss_pred ------CEEEEEeCCCCcEEEEEEE-C--------------------CeEEEEEEccCCCCccc
Confidence 77777 899999999999 4 27999999999998875
No 4
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=100.00 E-value=3.5e-45 Score=334.02 Aligned_cols=249 Identities=10% Similarity=0.138 Sum_probs=211.7
Q ss_pred CCCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEch
Q 022104 9 ESPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLG 86 (302)
Q Consensus 9 ~~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~ 86 (302)
.-+||+|++.+++.|+++++||+ +.+. |+|+|+++||+++ +|++|++|++++|++++|++|+|+. ++.||+||+
T Consensus 3 ~~~mf~a~~~~a~~lk~ii~ai~~i~~~--v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~d~--~~~igi~l~ 78 (265)
T 3p91_A 3 HMCAFHAKFKEAALFKRVVESLKSTIDK--TNFDCSDAGIAVQCMDNSHVSLVSLLIETDAFDEFQCLK--PITLGINLT 78 (265)
T ss_dssp -CCSEEEEESCHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSSSEEEEEECGGGEEEEECSS--CEEEEEEHH
T ss_pred ccEEEEEEECchHHHHHHHHHHHHHhce--EEEEEeCCeEEEEEECCCcEEEEEEEEChhhceEEEeCC--CeEEEEEHH
Confidence 46899999999999999999998 7777 9999999999999 6789999999999999999999984 689999999
Q ss_pred hHHHHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHH
Q 022104 87 LFADCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKE 164 (302)
Q Consensus 87 ~L~~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~ 164 (302)
.|.|||+++++ + +.++|.|.+. ++.+.+++.+.. +. .+.+++++++.+ ++... ..++.++|+|++.+|++
T Consensus 79 ~L~kiLk~~~~-~--d~v~i~~~~~~~~l~~~~e~~~~~-~i-~~~lrLid~~~~--~~~iP-~~e~~~~v~~~s~~f~~ 150 (265)
T 3p91_A 79 HLSKILKALDN-D--CGLILDVKKVDDAVLSITSEGTNK-TM-KFGLNLVDIEAE--SVEIP-ELQSDAIITLSSAEFLK 150 (265)
T ss_dssp HHHHHHTTSCT-T--SEEEEEECSSSSEEEEEEEC--CC-EE-EEEEECCCCCCC--CCCCC-CCCCSEEEEEEHHHHHH
T ss_pred HHHHHHhhcCC-C--CEEEEEEcCCCCeEEEEEEeCCCc-eE-EEEEEecccCcc--cCCCC-CCCccEEEEEEHHHHHH
Confidence 99999999975 2 6899999764 788999866643 22 669999999875 33332 23778999999999999
Q ss_pred HHHHhcCCC-CeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCC---CcEEEEEeCcceEEEEehhhHHHhhccCCCCc
Q 022104 165 AIDDLEWPG-SSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNT---DLLIAFHCDREVSYRYKYKFLRATTSNLPGCV 239 (302)
Q Consensus 165 a~~dL~~~s-d~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s---~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~ 239 (302)
+|++++..| +.|+|.++ +++|+|++.| +|+++++++ .++ +.++.++|.++++.+|+++||+.++||+++|
T Consensus 151 ~i~~~~~~s~d~V~i~~~--~~~v~~ss~gd~G~~~~~l~--~~~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~ls- 225 (265)
T 3p91_A 151 ITKDFSALGDDSITIGCT--KNEVTLTTKGAMCETCMTLS--ALENVDSNGLQIEHNKDVTASFALKQISEFAKSAPLA- 225 (265)
T ss_dssp HHHHHHHHCCSEEEEEEC--SSEEEEEEECSSCEEEEEEE--C-------CCEEEESSCEEEEEEHHHHHHHGGGGGGC-
T ss_pred HHHHHHhCCCCEEEEEEE--CCEEEEEEEecCceEEEEEe--cCCCCCCceEEEEcCCcEEEEEEHHHHHHhhcccccC-
Confidence 999999999 99999998 5699999999 999999998 433 5678899999999999999999999999987
Q ss_pred ccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCCC
Q 022104 240 IKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDTI 301 (302)
Q Consensus 240 ~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~~ 301 (302)
++|+| +.++||++||+| . .|||+|||||++++||.
T Consensus 226 ------~~V~i~~~~~~Pl~l~~~i-~--------------------~g~~~f~lAPri~~~~~ 262 (265)
T 3p91_A 226 ------DNVKLSLSGQAPLIMEFKG-E--------------------ACVLKFYLAPKFDEEDE 262 (265)
T ss_dssp ------SEEEEEECSSSCEEEEEEE-T--------------------TEEEEEEECCBC-----
T ss_pred ------CEEEEEeCCCccEEEEEEE-C--------------------CEEEEEEEcCCCCCccC
Confidence 77777 889999999999 4 27999999999998864
No 5
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=100.00 E-value=4.4e-42 Score=312.50 Aligned_cols=243 Identities=16% Similarity=0.257 Sum_probs=213.9
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|+++++||+ +.+. |+|+|+++||+++ +|++|++|+++.|+++.|++|+|+. ++.|||||+.|.
T Consensus 2 ~f~a~~~~a~~lk~ii~ai~~i~~~--v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~--~~~igi~l~~L~ 77 (259)
T 3lx2_A 2 TFEIVFDSAREFESLIATLEKFFDE--AVFQVNMEGIQMRAIDPSRVVLVDLNLPEMLFSKYSVES--EEAIAFDLKRFL 77 (259)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTCSE--EEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEEESS--CEEEEEEHHHHH
T ss_pred eEEEEECcHHHHHHHHHHHHHHhce--EEEEEecCeEEEEEECCCCEEEEEEEEChHhcEEEEcCC--CEEEEEEHHHHH
Confidence 79999999999999999998 7777 9999999999999 6789999999999999999999984 689999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC-CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG-PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g-~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
|||+++++ + +.++|...+ .++.+.+++.+ .+ .+.+++++++.+ ++... ..++.++|+|++.+|++++++
T Consensus 78 kiLk~~~~-~--d~v~i~~~~~~~l~~~~e~~~-~~---~~~~rLid~~~~--~~~iP-~~e~~~~v~~~s~~f~~~i~~ 147 (259)
T 3lx2_A 78 KVLKLARS-R--DTLVLRKGGENFLEVGLLGDE-NT---WFKLPLIDANTP--EIEIP-SLPWTVKAVVLAGALKRAVKA 147 (259)
T ss_dssp HHHTTCCT-T--CEEEEEECSSSEEEEEEESSS-EE---EEEEECCCCCCC--CCCCC-CCCCCEEEEEEHHHHHHHHHH
T ss_pred HHHHhcCC-C--CEEEEEECCCCEEEEEEecCc-eE---EEEEEeeccCcc--cCCCC-CCceeEEEEEEHHHHHHHHHH
Confidence 99999975 2 678898543 47889898655 33 459999999875 44432 237889999999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeC-cceEEEEehhhHHHhhccCCCCcccCCcce
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCD-REVSYRYKYKFLRATTSNLPGCVIKHNRGS 246 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~-e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~ 246 (302)
++..|+.|+|.++ +++++|++.| +|+++++++ .+++.+++++|. ++++.+|+++||+.++||+++| +
T Consensus 148 ~~~~sd~V~i~~~--~~~v~~ss~gd~G~~~~~l~--~~~~~~~~~~~~~e~~~~~F~~~YL~~~~Ka~~~s-------~ 216 (259)
T 3lx2_A 148 AKLVSDSIYFMAT--PEKLTFKAEGNDSEVRTVLT--MEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADA-------D 216 (259)
T ss_dssp HHHHCSEEEEEEC--SSCEEEEEECSSCEEEEEEC--TTSTTEEEEEESSSCEEEEEEHHHHHHHHSSSCTT-------S
T ss_pred HHhcCCEEEEEEE--CCEEEEEEEecCcEEEEEEc--CCCCceEEEEecCceEEEEEEHHHHHhhhccccCC-------C
Confidence 9999999999998 5799999999 999999999 677889999999 9999999999999999999987 7
Q ss_pred EEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCC
Q 022104 247 KLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDED 299 (302)
Q Consensus 247 ~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~ 299 (302)
+|+| +.++||.++|++.+ .|+++||+||++++.
T Consensus 217 ~V~l~~~~~~Pl~l~~~i~~--------------------~g~~~y~laP~~~~~ 251 (259)
T 3lx2_A 217 EVIIRFGFDIPLLLKYMVRD--------------------AGEVSFLIAPRVEEG 251 (259)
T ss_dssp EEEEEECTTSCEEEEEEETT--------------------TEEEEEEECCCC---
T ss_pred eEEEEeCCCCCEEEEEEeCC--------------------CeEEEEEEccccCCC
Confidence 7777 88999999999952 389999999999874
No 6
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.1e-42 Score=352.85 Aligned_cols=250 Identities=16% Similarity=0.218 Sum_probs=214.2
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
..||+|++.+++.|+++++|++ +.+. |+|+|+++||+++ +|++|++|++++|++++|++|+|++ ++.||+||+.
T Consensus 539 ~~mfea~l~~~~~lk~ii~ai~~iv~~--~~~~~~~~Gi~~~a~D~s~valv~~~L~~~~F~~y~cd~--~i~iG~nL~~ 614 (798)
T 3k4x_A 539 SGALEAKFEEASLFKRIIDGFKDCVQL--VNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDH--PVTLGMDLTS 614 (798)
T ss_dssp ---CEEEESSHHHHHHHHHTTTTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEECSS--CEEEEEEHHH
T ss_pred cceEEEEcCchHHHHHHHHHHHHHhCc--EEEEEECCeEEEEEECCCcEEEEEEEeccccCceEEcCC--CeEEEEEHHH
Confidence 4699999999999999999999 7666 9999999999999 6779999999999999999999994 6999999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHH
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEA 165 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a 165 (302)
|.||||++++ ++.++|.+.+. ++.+.+|+.+.. +.+.|.+++++++.+ ++..+. .++.++|+|+|.+|+++
T Consensus 615 L~kiLk~~~~---~d~v~l~~~d~~~~l~~~~e~~~~~-~~~~f~lkL~d~~~~--~~~iP~-~e~~~~i~m~s~~f~~~ 687 (798)
T 3k4x_A 615 LSKILRCGNN---TDTLTLIADNTPDSIILLFEDTKKD-RIAEYSLKLMDIDAD--FLKIEE-LQYDSTLSLPSSEFSKI 687 (798)
T ss_dssp HHHHHHHSCS---SSEEEEECCSSCSEEEEEEECSSCC-CEEEEEEECCCCCCC--CCCCCC-CCCSEEEEEEHHHHHHH
T ss_pred HHHHHhccCC---CCEEEEEEcCCCCeEEEEEecCCCc-eEEEEEEEeecCCCC--CCCCCC-ccceEEEEEEHHHHHHH
Confidence 9999999986 36899999875 599999977644 445789999999975 444432 36789999999999999
Q ss_pred HHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccC---CCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 166 IDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYV---NTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 166 ~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~---~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
|++|+..|+.|+|.++ +++++|++.| +|+++++++.+. +.+..+.++|.+|++.+|+++||+.++||+++|
T Consensus 688 ~~~l~~~sd~v~i~~~--~~~v~~s~~gd~G~~~~~l~~~~~~~~~~~~~~i~~~e~~~~~f~l~YL~~~~Ka~~ls--- 762 (798)
T 3k4x_A 688 VRDLSQLSDSINIMIT--KETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS--- 762 (798)
T ss_dssp HHHHHTTCSEEEEEEE--TTEEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTC---
T ss_pred HHHHHhcCCEEEEEEe--CCEEEEEEEcccceEEEEecCCCCCCCccccEEEEcCCceEEEEEHHHHHHHhhhccCC---
Confidence 9999999999999999 5799999999 999999997321 114578899999999999999999999999988
Q ss_pred CCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 242 HNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 242 ~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
++|+| +.++||++||+| . .|||+|||||++++||
T Consensus 763 ----~~V~i~~~~~~Pl~~~y~i-~--------------------~G~i~fylAPki~~~~ 798 (798)
T 3k4x_A 763 ----DRVGIRLSSEAPALFQFDL-K--------------------SGFLQFFLAPKFNDEE 798 (798)
T ss_dssp ----SEEEEEECSSSCEEEEEEE-T--------------------TEEEEEEECCC-----
T ss_pred ----CeEEEEeCCCccEEEEEEE-c--------------------ceEEEEEECcCCCCCC
Confidence 77777 899999999999 5 3799999999999885
No 7
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=100.00 E-value=5.4e-41 Score=302.89 Aligned_cols=239 Identities=15% Similarity=0.204 Sum_probs=210.6
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcce-EEEEchhH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPR-FGVSLGLF 88 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~-fgInL~~L 88 (302)
||+|++.+++.|+++++||+ +.+. |+|+|+++||+++ +|++|++++++.|+++.|++|+|+. +.. +|+||+.|
T Consensus 1 m~~a~~~~a~~~k~i~~ai~~i~~~--~~~~~~~~gl~~~A~D~~rval~~~~l~~~~F~~y~~~~--~~~i~gi~l~~l 76 (245)
T 3fds_D 1 MMKAKVIDAVSFSYILRTVGDFLSE--ANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQ--EKEIIGFKLEDV 76 (245)
T ss_dssp CEEEEESCHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGEEEEEESS--SCEEEEEEHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHHHhce--EEEEEcCCeEEEEEECCCCEEEEEEEEChHhCEEEEeCC--ccEEEEEEHHHH
Confidence 79999999999999999999 7777 9999999999999 6789999999999999999999984 577 99999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
.+||+++++ + +.++|.+.+.++.+.+++.+ . +.+.++++|.+.+ ++.. |..++.++++|++++|++++++
T Consensus 77 ~kiL~~~~~-~--d~v~i~~~~~~l~~~~~~~~-~---~~~~~rLid~~~~--~~~i-P~~~~~~~v~~~s~~f~~~i~~ 146 (245)
T 3fds_D 77 NDILKRVLK-D--DTLILSSNESKLTLTFDGEF-T---RSFELPLIQVEST--QPPS-VNLEFPFKAQLLTITFADIIDE 146 (245)
T ss_dssp HHHHTTCCT-T--CEEEEEECSSEEEEEEESSS-E---EEEEEECCCCCCC--CC-----CCCSEEEEEEHHHHHHHHHH
T ss_pred HHHHHhcCC-C--CEEEEEEeCCEEEEEEecCc-e---EEEEEEeecCCcc--cCCC-CCcceEEEEEEEHHHHHHHHHH
Confidence 999999875 2 68999997778999998554 2 3459999999875 5553 3237889999999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceE
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSK 247 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~ 247 (302)
++..|+.|+|.++ +++++|+++| .|+++++++ .+++.+++++ .++++.+|.++||+.++||+++| ++
T Consensus 147 ~~~~s~~V~i~~~--~~~l~~s~~gd~g~~~~~l~--~~~~~~~~~~-~e~~~~~F~~~YL~~~~ka~~~s-------~~ 214 (245)
T 3fds_D 147 LSDLGEVLNIHSK--ENKLYFEVIGDLSTAKVELS--TDNGTLLEAS-GADVSSSYGMEYVANTTKMRRAS-------DS 214 (245)
T ss_dssp HTTTCSEEEEEEE--TTEEEEEEECSSCEEEEEEC--TTSSSCSEEE-ECCCEEEEEHHHHHHGGGGGGTC-------SE
T ss_pred HHhcCCEEEEEEe--CCEEEEEEEecCcEEEEEEc--CCCCceEEEe-cceEEEEEEHHHHHHHhhhcccC-------CE
Confidence 9999999999998 5689999999 999999999 6677788899 89999999999999999999887 77
Q ss_pred EEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 248 LII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 248 V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
|+| +.++||.+||++.+ .|+++||||||+
T Consensus 215 V~i~~~~~~Pl~l~~~i~~--------------------~g~~~y~laPr~ 245 (245)
T 3fds_D 215 MELYFGSQIPLKLRFKLPQ--------------------EGYGDFYIAPRA 245 (245)
T ss_dssp EEEEECTTSCEEEEEECST--------------------TCEEEEEECCCC
T ss_pred EEEEecCCccEEEEEEeCC--------------------CeEEEEEEeecC
Confidence 777 88899999999953 479999999985
No 8
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=100.00 E-value=3.9e-41 Score=304.20 Aligned_cols=240 Identities=16% Similarity=0.275 Sum_probs=187.2
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++ +++.|+++++||+ +.+. |+|+|+++||+++ +|++|++++++.|+++.|++|+|+. ++ +|+||+.|.
T Consensus 1 Mf~a~~-~a~~~k~i~~ai~~i~~~--v~~~~~~~gl~~~A~D~~rvalv~~~l~~~~F~~y~~~~--~v-~g~~l~~l~ 74 (247)
T 3ifv_A 1 MFKAIV-SAATLRDALDSVSVLVDE--CKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHG--GV-IGVNLSRLE 74 (247)
T ss_dssp -CCEEE-CHHHHHHHHHHHHTTCSS--EEEC---CEEEEEEECTTSSEEEEEEEEGGGSSBC-------C-EEECHHHHH
T ss_pred CeEEEE-cHHHHHHHHHHHHHHhcE--EEEEEeCCeEEEEEECCccEEEEEEEEchhcCeEEEccC--cE-EEEEHHHHH
Confidence 799999 9999999999998 7777 9999999999999 6778999999999999999999983 57 999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
+||+++++ + +.++|.+.+ .++.+.++ + +. +.++++|.+.+.-+... |..++.++|+|++..|+++++
T Consensus 75 kiL~~~~~-~--d~v~i~~~~~~~~l~~~~~--~--~~---~~~rLid~~~~~~~~~i-P~~e~~~~v~~~s~~f~~~i~ 143 (247)
T 3ifv_A 75 EVAGMAGA-G--DLIHLTLDEETRKLNIRID--G--LS---YTLALIDPDSIRQEPDI-PDLDLAANIVLEGTHLDRGIK 143 (247)
T ss_dssp HHHTTC-------CEEECC-------EEEET--T--EE---EEC---CTTC----CCC-CCCCCSEEEEEEHHHHHHHHH
T ss_pred HHHhcCCC-C--CEEEEEEcCCCCEEEEEEe--C--cE---EEEEeecccccccCCCC-CCCCceEEEEEEHHHHHHHHH
Confidence 99999875 2 579999976 46777765 2 24 49999999864211222 213677999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcce
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGS 246 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~ 246 (302)
+++..|+.|+|.++|++++|+|+++| +|+++++++ ++ .+.+++ .++++.+|+++||+.++||+++| +
T Consensus 144 ~~~~~sd~V~i~~~~~~~~~~~s~~gd~g~~~~~l~--~~--~~~~~~-~e~~~~~F~~~YL~~~~Ka~~~s-------~ 211 (247)
T 3ifv_A 144 AADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLP--PA--DLISIE-AGAADSLFSLDYLKDMNKAIPTD-------A 211 (247)
T ss_dssp HHHHHCSEEEEEEETTTTEEEEEEECSSCEEEEEEC--GG--GCSEEE-ECCCEEEEEHHHHHHHHHHSCTT-------C
T ss_pred HHHhhCCEEEEEEECCCCEEEEEEEecceEEEEEEC--CC--ceEEEe-cCeEEEEEeHHHHHHhhhhccCC-------C
Confidence 99999999999999888999999999 999999998 32 356788 78999999999999999999987 7
Q ss_pred EEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCC
Q 022104 247 KLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDED 299 (302)
Q Consensus 247 ~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~ 299 (302)
+|+| +.++||.+||++.. ..|+++|||||++++|
T Consensus 212 ~V~i~~~~~~Pl~l~~~i~~-------------------~~g~~~~~lAPri~~~ 247 (247)
T 3ifv_A 212 EVTVELGEEFPVKLHYQIAE-------------------GMGTITYMLAPRIQSD 247 (247)
T ss_dssp EEEEEECBSSCEEEEEEEGG-------------------GTEEEEEEECCC----
T ss_pred EEEEEecCCccEEEEEEEcC-------------------CcEEEEEEEeecccCC
Confidence 7777 88999999999963 1489999999999976
No 9
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=100.00 E-value=2.6e-37 Score=280.15 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=214.3
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|++++++++ +.+. ++|+++++||+++ +|.+|++++++.|+++.|++|+|+. ++.+|+++..|.
T Consensus 1 mf~a~~~~~~~~~~i~~~i~~i~~~--v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~F~~y~~~~--~~~~~i~l~~l~ 76 (258)
T 1plq_A 1 MLEAKFEEASLFKRIIDGFKDCVQL--VNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDH--PVTLGMDLTSLS 76 (258)
T ss_dssp CEEEEESSHHHHHHHHHHHTTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEECCSS--CEEEEEEHHHHH
T ss_pred CeEEEecchHHHHHHHHHHHHHhce--EEEEEcCCceEEEEECCCcEEEEEEEECHHhCcEEEeCC--CeEEEEEHHHHH
Confidence 79999999999999999999 6666 9999999999999 5668899999999999999999984 588999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
++|+++++ + +.++|.+.+ ..+.+.+++.+.. +.+.+.+++++.+.+ ++.+... ++.++++|++.+|++|++
T Consensus 77 kil~~~~~-~--d~v~i~~~~~~~~l~~~~~~~~~~-~~~~~~~rlie~~~~--~~~ip~~-~~~~~i~~~~~~l~~av~ 149 (258)
T 1plq_A 77 KILRCGNN-T--DTLTLIADNTPDSIILLFEDTKKD-RIAEYSLKLMDIDAD--FLKIEEL-QYDSTLSLPSSEFSKIVR 149 (258)
T ss_dssp HHTTCSTT-T--SEEEEEECSSCSEEEEEEECSSSS-CEEEEEEECBCCCCC--CCCCCCS-CCSEEEEEEHHHHHHHHH
T ss_pred HHHhcCCC-C--CEEEEEecCCCCeEEEEEEcCCCC-eEEEEEEEcccCCcc--cCCCCCC-CccEEEEEeHHHHHHHHH
Confidence 99999875 2 689999976 5788888864433 335669999999875 5554322 678999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCC
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHN 243 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~ 243 (302)
+++..|+.|+|.++ ++.++|++.| .|+++++++.. .+.+.+++++|.++++.+|.++||+.++||+++|
T Consensus 150 r~~~~s~~v~i~~~--~~~l~ls~~~d~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~f~~~yL~~~lka~~~s----- 222 (258)
T 1plq_A 150 DLSQLSDSINIMIT--KETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS----- 222 (258)
T ss_dssp HHHTTCSEEEEEEE--TTEEEEEEECSSCEEEEEECCBCCTTCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGTC-----
T ss_pred HHHhcCCEEEEEEE--CCEEEEEEEccCceEEEEEecCCCCCCCccceEEecCCcEEEEEEHHHHHHHhccccCC-----
Confidence 99999999999998 5799999999 99999999821 0345667899999999999999999999999877
Q ss_pred cceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 244 RGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 244 ~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
++|++ +.++|+.++|++. .|+++||++|++++||
T Consensus 223 --~~V~i~~~~~~Pl~l~~~~~---------------------~~~~~y~l~P~~~~e~ 258 (258)
T 1plq_A 223 --DRVGIRLSSEAPALFQFDLK---------------------SGFLQFFLAPKFNDEE 258 (258)
T ss_dssp --SEEEEEECSSSCEEEEEEET---------------------TEEEEEEECCCSSSCC
T ss_pred --ceEEEEECCCCCEEEEEEEC---------------------CeEEEEEECCcCCCCC
Confidence 77777 7789999999883 2699999999999875
No 10
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=100.00 E-value=1.5e-36 Score=275.40 Aligned_cols=250 Identities=16% Similarity=0.224 Sum_probs=209.6
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|++++++|+ +.+. |+|+++++||+++ +|.+|++++++.++++.|++|+|+. ++.+|+++..|.
T Consensus 1 mf~a~~~~~~~~k~i~~~i~~il~~--v~~~~~~~gl~~~a~D~~rla~~~~~l~~~~f~~y~~~~--~i~~~i~l~~l~ 76 (261)
T 1u7b_A 1 MFEARLVQGSILKKVLEALKDLINE--ACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDR--NLAMGVNLTSMS 76 (261)
T ss_dssp CEEEEESCTHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESS--CEEEEEEHHHHH
T ss_pred CeEEEecchHHHHHHHHHHHHHhcE--EEEEEeCCceEEEEECCCCEEEEEEEECHHhCeEEEeCC--CeEEEEEHHHHH
Confidence 79999999999999999998 6666 9999999999999 6678899999999999999999984 588999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
++|+++++ + +.++|.|.+ ..+.+.++..+.. +.+.+.+++++.+.+ ++.+.. .++.++++|++.+|+++++
T Consensus 77 kil~~~~~-~--d~v~i~~~~~~~~l~~~~~~~~~~-~~~~~~~rlie~~~~--~~~iP~-~~~~~~i~~~~~~l~~ai~ 149 (261)
T 1u7b_A 77 KILKCAGN-E--DIITLRAEDNADTLALVFEAPNQE-KVSDYEMKLMDLDVE--QLGIPE-QEYSCVVKMPSGEFARICR 149 (261)
T ss_dssp HHHTTSCT-T--CEEEEEECTTCSEEEEEEECTTSS-CEEEEEEECCCCCCC--CCBCCC-CCCSEEEEEEHHHHHHHHH
T ss_pred HHHhcCCC-C--CEEEEEecCCCCEEEEEEEcCCCC-eEEEEEEECccCCcc--cCCCCC-CcccEEEEEEHHHHHHHHH
Confidence 99999975 2 689999984 4788888864433 335669999998864 444332 2678999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEecc---CCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCC
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYY---VNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHN 243 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~---~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~ 243 (302)
+++..++.|+|.++ ++.++|++.| .|+++++++.. .+++.++.++|.++++.+|.++||+.++||+++|
T Consensus 150 r~~~~s~~v~i~~~--~~~l~ls~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~i~f~~~yL~~~lka~~~s----- 222 (261)
T 1u7b_A 150 DLSHIGDAVVISCA--KDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLS----- 222 (261)
T ss_dssp HHHTTCSEEEEEEE--TTEEEEEEEETTEEEEEEECCCC----CCSCCEEEESSCEEEEEEHHHHHHHGGGGGGC-----
T ss_pred HHHhcCCEEEEEEE--CCEEEEEEEecCceEEEEEecCCCCCCCccceEEecCCcEEEEEeHHHHHHHhCcccCC-----
Confidence 99999999999998 5699999999 99999999821 0145567899999999999999999999999877
Q ss_pred cceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCCC
Q 022104 244 RGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDTI 301 (302)
Q Consensus 244 ~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~~ 301 (302)
++|.+ +.++|+.++|.+.. .++++||++|++++||.
T Consensus 223 --~~V~i~~~~~~P~~l~~~~~~--------------------~~~~~y~l~P~i~~e~~ 260 (261)
T 1u7b_A 223 --STVTLSMSADVPLVVEYKIAD--------------------MGHLKYYLAPKIEDEEG 260 (261)
T ss_dssp --SEEEEEECTTSCEEEEEEETT--------------------TEEEEEEECCBC-----
T ss_pred --CeEEEEECCCCCEEEEEEeCC--------------------CcEEEEEECCcCcccCC
Confidence 77777 77899999998842 26999999999998774
No 11
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=100.00 E-value=2.9e-35 Score=269.69 Aligned_cols=250 Identities=17% Similarity=0.230 Sum_probs=210.3
Q ss_pred CCCCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEc
Q 022104 8 AESPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSL 85 (302)
Q Consensus 8 ~~~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL 85 (302)
...+||+|++.+++.|++++++++ +.+. |+|+++++||+++ +|.+|++++.+.++++.|++|+|+. ++.+++++
T Consensus 17 ~~~~mf~a~~~~~~~lk~ii~~~~~il~~--v~~~~~~~gl~~vAtD~~rla~~~~~l~~~~f~~y~~~~--~i~~~i~l 92 (276)
T 2zvv_A 17 RGSHMLELRLVQGSLLKKVLESIKDLVND--ANFDCSSTGFSLQAMDSSHVALVSLLLRSEGFEHYRCDR--NLSMGMNL 92 (276)
T ss_dssp ----CEEEEESCTHHHHHHHHHHTTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESS--CEEEEEEH
T ss_pred CcceeEEEEeCChHHHHHHHHHHHHHhce--EEEEEECCeEEEEEECCCCEEEEEEEEChhhCcEEEcCC--CEEEEEEH
Confidence 457899999999999999999998 6666 9999999999999 5668899999999999999999984 58899999
Q ss_pred hhHHHHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHH
Q 022104 86 GLFADCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALK 163 (302)
Q Consensus 86 ~~L~~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~ 163 (302)
..|.++|+++++ + +.++|.|.+ ..+.+.+++.+.. +.+.+.+++++.+.| ++.+.. .++.++++|++.+|+
T Consensus 93 ~~l~kilk~~~~-~--d~v~i~~~~~~~~l~~~~~~~~~~-~~~~~~~rLid~~~p--~~~iP~-~~~~~~i~~~~~~l~ 165 (276)
T 2zvv_A 93 GNMSKMLKCAGN-D--DIITIKADDGGDTVTFMFESPTQD-KIADFEMKLMDIDSE--HLGIPD-AEYHSIVRMPSNEFS 165 (276)
T ss_dssp HHHHHHHHTSCT-T--CEEEEEECTTCSEEEEEEECTTSS-CEEEEEEECCCEECC--CCCCCC-CCCSEEEEEEHHHHH
T ss_pred HHHHHHHhhCCC-C--CeEEEEEcCCCCeEEEEEEeCCCc-eEEEEEEEcccCCcc--cCCCCC-CcccEEEEEEHHHHH
Confidence 999999999975 2 689999984 4788888865433 345679999998764 555432 267899999999999
Q ss_pred HHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccC---CCCcEEEEEeCcceEEEEehhhHHHhhccCCCCc
Q 022104 164 EAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYV---NTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCV 239 (302)
Q Consensus 164 ~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~---~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~ 239 (302)
+|+++++..++.|+|.++ ++.++|++.| .|+++++++... +.+.+++++|.++++.+|.++||+.++||+++|
T Consensus 166 ~av~r~~~~sd~V~i~~~--~~~l~lsa~gd~g~~~~~l~~~~~~~~~~~~~~~~~ge~~~i~fn~~YL~d~lka~~ls- 242 (276)
T 2zvv_A 166 RICKDLSSIGDTVVISVT--KEGVKFSTAGDIGTANIVLRQNTTVDKPEDAIVIEMKEPVSLSFALRYMNSFTKATPLS- 242 (276)
T ss_dssp HHHHHHHTTCSEEEEEEE--TTEEEEEEEETTEEEEEEECCCSSCCSGGGCCEEEESSCEEEEEEHHHHHHHGGGGGGC-
T ss_pred HHHHHHHhhCCEEEEEEe--CCEEEEEEEeeccEEEEEEccCCCCCCccccEEEecCCcEEEEEEHHHHHHHhccccCC-
Confidence 999999999999999998 5799999999 999999997210 135567899999999999999999999999877
Q ss_pred ccCCcceEEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 240 IKHNRGSKLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 240 ~~~~~~~~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
++|+| +.++|+.++|.+.. .|++.||++|+++
T Consensus 243 ------~~V~i~l~~~~Pl~l~~~~~~--------------------~g~~~y~laP~i~ 276 (276)
T 2zvv_A 243 ------DTVTISLSSELPVVVEYKVAE--------------------MGYIRYYLAPKIE 276 (276)
T ss_dssp ------SEEEEEECTTSCEEEEEEETT--------------------TEEEEEEECCBC-
T ss_pred ------CEEEEEEcCCceEEEEEEeCC--------------------CcEEEEEEccccC
Confidence 77777 78899999998842 2699999999985
No 12
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=100.00 E-value=3.1e-32 Score=245.46 Aligned_cols=242 Identities=14% Similarity=0.233 Sum_probs=203.7
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
+|+|++.+++.|++++++++ +.+. +.|+++++||+++ +|..|.+++.+.++++.|++|+|+. ++.+++++..|.
T Consensus 2 ~f~a~~~~~~~~~~i~~~i~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~~~~~~~l~~l~ 77 (249)
T 1iz5_A 2 PFEIVFEGAKEFAQLIDTASKLIDE--AAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVE--PETIGVNLDHLK 77 (249)
T ss_dssp CEEEEEECHHHHHHHHHHHTSSCSE--EEEEECSSEEEEEEECTTSSEEEEEEEEGGGSSEEEESS--CEEEEEEHHHHH
T ss_pred cEEEEeCchHHHHHHHHHHHHHhcE--EEEEEeCCeEEEEEECCCcEEEEEEEECHHhCcEEEcCC--CeEEEEEHHHHH
Confidence 69999999999999999998 6666 9999999999999 5567889999999999999999984 588999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC-CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP-DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
++|+++++ + +.++|.+.+. .+.+.+++.+ . +.+.++++|.+.| ++.+.. .++.++++|++.+|++|+++
T Consensus 78 kil~~~~~-~--~~v~i~~~~~~~l~f~~~~~~-~---~~~~~rlidg~~p--~~~iP~-~~~~~~v~i~~~~l~~a~~r 147 (249)
T 1iz5_A 78 KILKRGKA-K--DTLILKKGEENFLEITIQGTA-T---RTFRVPLIDVEEM--EVDLPE-LPFTAKVVVLGEVLKAAVKA 147 (249)
T ss_dssp HHHTTCCT-T--CEEEEEECSSSEEEEEEESSS-E---EEEEEECBCCCC-------CC-CCCCEEEEEEHHHHHHHHHH
T ss_pred HHHHhCCC-C--CEEEEEECCCCeEEEEEecCC-E---EEEEEEcccCCcc--CCCCCC-CcceEEEEEEHHHHHHHHHH
Confidence 99999874 2 6799999887 6777776433 2 3459999998875 666432 26789999999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceE
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSK 247 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~ 247 (302)
++..++.|+|.++ ++.++|++.| .|+++.+++ ..++.++.++|.++++.+|..+||..++||+++| ++
T Consensus 148 ~~~ls~~V~l~~~--~~~l~ls~~~d~g~~~~~l~--~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s-------~~ 216 (249)
T 1iz5_A 148 ASLVSDSIKFIAR--ENEFIMKAEGETQEVEIKLT--LEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKA-------DE 216 (249)
T ss_dssp HTTTCSEEEEEEE--TTEEEEEEECSSCEEEEEEE--TTTTSSSEEEESSCEEEEEEHHHHHHHHTTSCTT-------CE
T ss_pred HHhcCCEEEEEEE--CCEEEEEEEecCceEEEEEc--cCCCccEEEEcCCceEEEEeHHHHHHHhhhccCC-------Ce
Confidence 9999999999998 5799999999 999999998 5566678899999999999999999999999877 77
Q ss_pred EEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCC
Q 022104 248 LII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDE 298 (302)
Q Consensus 248 V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~ 298 (302)
|.+ +.++|+.+++.+.. .+++.||++|++++
T Consensus 217 V~l~~~~~~p~~i~~~~~~--------------------~~~~~y~i~P~~~~ 249 (249)
T 1iz5_A 217 VTIKFGNEMPMQMEYYIRD--------------------EGRLTFLLAPRVEE 249 (249)
T ss_dssp EEEEECTTCCEEEEEEETT--------------------TEEEEEEECCC---
T ss_pred EEEEEcCCCCEEEEEEeCC--------------------CcEEEEEEccccCC
Confidence 777 77899999998742 26899999999974
No 13
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=100.00 E-value=3.6e-32 Score=244.92 Aligned_cols=241 Identities=11% Similarity=0.162 Sum_probs=205.0
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
||+|++.+++.|++++++++ +.+. +.|+++++||+++ +|..|++++.+.++++.|++|+|+. ++.+++++..|.
T Consensus 1 mf~a~~~~~~~~k~i~~~i~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~i~~~~~l~~l~ 76 (248)
T 3aiz_A 1 MIKATYSSAKDFYSLLSGLLKVTDE--IILNFTEDSIFSRYLTDDKVLMVIFKIPKEYLEDYTIDK--PLGIKININDLK 76 (248)
T ss_dssp CCEEEESCHHHHHHHHTTCTTCCSE--EEEEECSSEEEEEEECTTSSEEEEEEEEGGGCEEEECSS--CEEEEEEHHHHH
T ss_pred CeEEEecchHHHHHHHHHHHHHHhe--EEEEEccCcEEEEEECCCCEEEEEEEECHHhCceEEcCC--CeEEEEEHHHHH
Confidence 79999999999999999998 6666 9999999999999 5667899999999999999999984 588999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC--CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG--PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g--~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
++|+++ + + +.++|.+.+ ..+.+.+++.+.. ..+.+.++++|.+.| ++.+. ..++.++++|++.+|++|++
T Consensus 77 kil~~~-~-~--~~v~i~~~~~~~~l~~~~~~~~~~-~~~~~~~rlidg~~p--~~~iP-~~~~~~~v~~~~~~l~~av~ 148 (248)
T 3aiz_A 77 KILGKA-K-S--KSATVTLEETEAGLKVTVRDEKTG-TRSNIYIKGEKTSID--QLTEP-KVNLSVTFTTDGDVLKDIAR 148 (248)
T ss_dssp HHHHTC-S-S--TTCEEEEEECSSEEEEEEEETTTT-EEEEEEEECEEECCC--CCCCC-CCCCSEEEEECHHHHHHHHH
T ss_pred HHHhhc-C-C--CEEEEEEeCCCCeEEEEEEeCCCC-EEEEEEEEccccCcc--cCCCC-CCCccEEEEEeHHHHHHHHH
Confidence 999987 3 3 457777765 5788888874332 335669999998774 66643 22678999999999999999
Q ss_pred HhcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcce
Q 022104 168 DLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGS 246 (302)
Q Consensus 168 dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~ 246 (302)
+++..++.|+|.++ ++.++|++.| .|+++.+++ +++ .++.++|.++++.+|..+||..++||+++| +
T Consensus 149 r~~~~s~~V~i~~~--~~~l~ls~~~d~g~~~~~~~--~~~-~~~~~~~ge~~~i~fn~~yL~d~lk~~~~s-------~ 216 (248)
T 3aiz_A 149 DLSLVGEEVEISAD--ENTVTLSTEEAGRTYKSLLK--QDK-PLKSLNVESPSKAVYSIEVLKDVFKVTSIS-------Q 216 (248)
T ss_dssp HHTTSCSEEEEEEC--SSEEEEEEEETTEEEEEEEE--ETB-EESEEEESSCEEEEEEHHHHHHHHHHGGGC-------S
T ss_pred HHHhcCCEEEEEEe--CCEEEEEEEccCceEEEEEc--CCC-cceEEecCCceEEEEEHHHHHHHhhhccCC-------C
Confidence 99999999999988 6799999999 999999998 433 367899999999999999999999999876 6
Q ss_pred EEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 247 KLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 247 ~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
+|.+ +.++|+.++|.+.. .+++.||++|++
T Consensus 217 ~V~l~~~~~~p~~i~~~~~~--------------------~~~~~y~i~P~i 248 (248)
T 3aiz_A 217 NVTVGFGNNIPMKIEVPTDS--------------------GGQLIFWIAPRL 248 (248)
T ss_dssp SEEEEEETTEEEEEEEECTT--------------------SCEEEEEECCCC
T ss_pred eEEEEEcCCCCEEEEEEeCC--------------------CcEEEEEECCcC
Confidence 6666 77899999998742 258899999985
No 14
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=100.00 E-value=1.1e-30 Score=234.68 Aligned_cols=239 Identities=18% Similarity=0.224 Sum_probs=202.5
Q ss_pred EEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHH
Q 022104 13 LVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFAD 90 (302)
Q Consensus 13 f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~ 90 (302)
|+|++.+++.|++++++++ +.+. +.|+++++||+++ +|..|.+++.+.++++.|++|+|+. ++.++++|..|.+
T Consensus 1 ~~a~~~~a~~~~~i~~~i~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~i~~~~~l~~l~k 76 (244)
T 2ijx_A 1 MKVVYDDVRVLKDIIQALARLVDE--AVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVND--EFKFGFNTQYLMK 76 (244)
T ss_dssp CEEEESCHHHHHHHHHHHHHHCSE--EEEEECSSEEEEEEECTTSSEEEEEEEEGGGCSEEECSS--CEEEEEEHHHHHH
T ss_pred CEEEECchHHHHHHHHHHHHHhce--EEEEEecCeEEEEEECCCcEEEEEEEECHHhCceEEcCC--CEEEEEEHHHHHH
Confidence 6899999999999999998 6666 9999999999999 5667889999999999999999983 5889999999999
Q ss_pred HHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 91 CLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 91 ~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
+|+++++ + +.++|.+.+.+-.+.|.-++..+ .+.++++|.+.| ++.+.. .++.++++|++.+|++|+++++
T Consensus 77 iL~~~~~-~--~~v~i~~~~~~~~l~~~~~~~~~---~~~~rlidg~~p--~~~iP~-~~~~~~i~i~~~~l~~a~~r~~ 147 (244)
T 2ijx_A 77 ILKVAKR-K--EAIEIASESPDSVIINIIGSTNR---EFNVRNLEVSEQ--EIPEIN-LQFDISATISSDGFKSAISEVS 147 (244)
T ss_dssp HHTTCCS-S--CEEEEEEEETTEEEEEEESSSEE---EEEEECCCCCCC--CCCCCC-CCCSEEEEEEHHHHHHHHHHHT
T ss_pred HHhhCCC-C--CEEEEEecCCCCEEEEEECCEEE---EEEEECCccCcc--cCCCCC-CcccEEEEEEHHHHHHHHHHHH
Confidence 9999864 2 57899997743334333344333 449999998875 666432 2678999999999999999999
Q ss_pred CCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEE
Q 022104 171 WPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLI 249 (302)
Q Consensus 171 ~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~ 249 (302)
..++.|+|.++ ++.++|++.| .|+ +.+++ .+++.++.++|.++++.+|..+||..++||+++| ++|.
T Consensus 148 ~~s~~V~l~~~--~~~l~ls~~~d~g~-~~~l~--~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s-------~~V~ 215 (244)
T 2ijx_A 148 TVTDNVVVEGH--EDRILIKAEGESEV-EVEFS--KDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLS-------DYVK 215 (244)
T ss_dssp TTCSEEEEEEE--TTEEEEEETTCTTS-EEEEE--TTTTCEEEEEESSCEEEEEEHHHHHHTGGGGGGC-------SEEE
T ss_pred hcCCEEEEEEE--CCEEEEEEEecCce-EEEEe--CCCCccEEEEcCCceEEEEEHHHHHHHhhhccCC-------CEEE
Confidence 99999999998 5799999999 999 99998 5667788999999999999999999999999876 7777
Q ss_pred E--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCC
Q 022104 250 I--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEE 296 (302)
Q Consensus 250 i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~ 296 (302)
+ +.++|+.++|.+.. .+++.||++|++
T Consensus 216 l~~~~~~p~~i~~~~~~--------------------~~~~~y~i~P~~ 244 (244)
T 2ijx_A 216 ISFGNQKPLQLFFNMEG--------------------GGKVTYLLAPKV 244 (244)
T ss_dssp EEEETTEEEEEEEECGG--------------------GCEEEEEECCCC
T ss_pred EEEcCCCCEEEEEEeCC--------------------CcEEEEEECccC
Confidence 7 77899999998742 258899999985
No 15
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=100.00 E-value=8.4e-31 Score=235.55 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=201.7
Q ss_pred EEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHH
Q 022104 13 LVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFAD 90 (302)
Q Consensus 13 f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~ 90 (302)
|+|++.+++.|++++++++ +.+. +.|+++++||+++ +|..|.+++.+.++++.|++|+|+. ++.++++|..|.+
T Consensus 1 f~a~~~~~~~~k~i~~~i~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~i~~~~~l~~l~k 76 (245)
T 1ud9_A 1 AHIVYDDVRDLKAIIQALLKLVDE--ALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPE--EFKFGFNTQYMSK 76 (245)
T ss_dssp CEEEESCHHHHHHHHHHHHHHCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEECSS--CEEEEEEHHHHHH
T ss_pred CEEEeCchHHHHHHHHHHHHHhce--EEEEEcCCeEEEEEECCCcEEEEEEEEChHhCeEEEcCC--CeEEEEEHHHHHH
Confidence 7899999999999999998 6666 9999999999999 5567789999999999999999983 5889999999999
Q ss_pred HHHhCCCCCCceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 91 CLNTFSAPGHSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 91 ~L~~f~~~~~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
+|+++++ + +.++|.+.+. .+.+.+ ++..+.| .++++|.+.| ++.+.. .++.++++|++.+|++|+++
T Consensus 77 iL~~~~~-~--~~v~i~~~~~~~~l~~~~--~~~~~~~---~~rlidg~~p--~~~ip~-~~~~~~i~i~~~~l~~a~~r 145 (245)
T 1ud9_A 77 LLKAAKR-K--EEIIIDADSPEVVKLTLS--GALNRVF---NVNNIEVLPP--EVPEVN-LEFDIKATINASGLKNAIGE 145 (245)
T ss_dssp HHTTCCS-C--CCEEEEEEETTEEEEEEC--SSSCEEE---EEECCCCCCC--CCC----CCCSEEEEEEHHHHHHHHHH
T ss_pred HHhcCCC-C--CEEEEEEcCCCCEEEEEE--CCEEEEE---EEECcccCcc--cCCCCC-CCccEEEEEeHHHHHHHHHH
Confidence 9999864 2 5688888776 455554 4433444 9999998875 665432 26789999999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceE
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSK 247 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~ 247 (302)
++..++.|+|.++ ++.++|++.| .|+ +.+++ .+++.++.++|.++++.+|..+||..++|++++| ++
T Consensus 146 ~~~~s~~V~l~~~--~~~l~ls~~~d~g~-~~~l~--~~~~~~~~~~~ge~~~i~Fn~~yL~d~lk~~~~s-------~~ 213 (245)
T 1ud9_A 146 IAEVADTLLISGN--EEKVVVKGEGENKV-EVEFS--KDTGSLADIEFNKESSSAYDVEYLNDIISLTKLS-------DY 213 (245)
T ss_dssp HHHHCSEEEEEEC--SSEEEEEESSSSCC-CEEEE--GGGTCEEEEEESSCEEEEEEHHHHHHTGGGGGGC-------SE
T ss_pred HHhcCCEEEEEEE--CCEEEEEEEccCce-EEEEe--cCCCccEEEEeCCceeEEEEHHHHHHHhhhcccC-------CE
Confidence 9999999999988 5799999999 999 99998 5567778899999999999999999999999876 77
Q ss_pred EEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 248 LII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 248 V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
|.+ +.++|+.+++.+.. .+++.||++|+++
T Consensus 214 V~l~~~~~~p~~i~~~~~~--------------------~~~~~y~i~P~~~ 245 (245)
T 1ud9_A 214 VKVAFADQKPMQLEFNMEG--------------------GGKVTYLLAPKLS 245 (245)
T ss_dssp EEEEECTTSCEEEEEECGG--------------------GCEEEEEECCBCC
T ss_pred EEEEEcCCCCEEEEEEeCC--------------------CcEEEEEEcccCC
Confidence 777 77899999998742 2588999999985
No 16
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.97 E-value=1.1e-29 Score=228.31 Aligned_cols=238 Identities=13% Similarity=0.235 Sum_probs=202.8
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
.|+|+ +++.|++++++++ +.+. +.|+++++||+++ +|..|.+++.+.++++.|++|+|+. ++.++++|..|.
T Consensus 2 ~fr~~--~~~~lk~~i~~~~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~i~~~~~l~~l~ 75 (246)
T 3aiz_C 2 RVKVI--DADAFSYIFRTLEEFIDE--ITLDFTSDGLKIRGIDPSRVTFIDILIPAGYFEEYNVEK--EEKVGVKLEDFT 75 (246)
T ss_dssp EEEES--CHHHHHHHHHHHTTTCSE--EEEEECSSEEEEEEECTTSCEEEEEEEEGGGSSEEECSS--CEEEEEEHHHHH
T ss_pred ceEEe--cHHHHHHHHHHHHHHhcE--EEEEEcCCeEEEEEECCCcEEEEEEEEChHhCcEEEcCC--CeEEEEEHHHHH
Confidence 47887 9999999999998 6666 9999999999999 5567789999999999999999983 588999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcC-CCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPG-PDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g-~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
++|+++++ + +.++|.+.+ ..+.+.+++.+ .+ .+.++++|.+.| ++.+. ..++.++++|++.+|++|+++
T Consensus 76 kiL~~~~~-~--~~v~i~~~~~~~l~~~~~~~~-~~---~~~~rlidg~~p--~~~iP-~~~~~~~i~i~~~~l~~a~~r 145 (246)
T 3aiz_C 76 DVLKTVTK-N--DSLYLETDENQNIKVTLDGVY-ER---TFTFPSIVASEI--ETPNL-NLEFPFKAKALTVTFTDIIDE 145 (246)
T ss_dssp HHHTTCCT-T--CEEEEEECSSSCEEEEEESSS-EE---EEEECCCCCCCC--CCSCS-CCCCSEEEEEEHHHHHHHHHH
T ss_pred HHHhhCCC-C--CEEEEEECCCCeEEEEEecCc-EE---EEEEEcccCCcc--cCCCC-CCcccEEEEEEHHHHHHHHHH
Confidence 99999864 2 579999955 37888888533 23 459999998875 66643 226789999999999999999
Q ss_pred hcCC-CCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcce
Q 022104 169 LEWP-GSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGS 246 (302)
Q Consensus 169 L~~~-sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~ 246 (302)
++.. ++.|+|.++ ++.++|++.| .|+++.+++ ..++.++.+++ ++++.+|..+||..++||+++| +
T Consensus 146 ~~~l~s~~V~l~~~--~~~l~ls~~~d~g~~~~~l~--~~~~~~~~~~g-e~~~i~Fn~~yL~d~lk~~~~s-------~ 213 (246)
T 3aiz_C 146 IEDIGGDSITFKAE--GGKLYLSANSDMGSSTIELS--TENGGLLESEG-GDAESVYGLEYVVNTSKMRKPS-------D 213 (246)
T ss_dssp HHHHCCSEEEEEEE--TTEEEEEEECSSCEEEEEEC--TTTTSCSEEEE-CCEEEEEEHHHHHTTGGGTTTC-------S
T ss_pred HhhCCCCEEEEEEE--CCEEEEEEEcCCceEEEEEe--cCCCccEEEEE-eeEEEEEEHHHHHHHhhhccCC-------C
Confidence 9998 999999998 5799999999 999999998 55666678998 8999999999999999999877 7
Q ss_pred EEEE--cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 247 KLII--GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 247 ~V~i--~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
+|.+ +.++|+.+++.+.. .+++.||++|+++
T Consensus 214 ~V~l~~~~~~p~~i~~~~~~--------------------~~~~~y~i~P~~~ 246 (246)
T 3aiz_C 214 TVEIAFGSQIPLKLRYNLPQ--------------------GGYADFYIAPRAE 246 (246)
T ss_dssp EEEEEEETTEEEEEEEEETT--------------------TEEEEEEECBCCC
T ss_pred eEEEEecCCCcEEEEEEeCC--------------------CCEEEEEEcccCC
Confidence 7777 67899999998742 2688999999985
No 17
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.97 E-value=1.2e-29 Score=228.21 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=197.8
Q ss_pred EEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHH
Q 022104 14 VCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADC 91 (302)
Q Consensus 14 ~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~ 91 (302)
.|++.+++.|++++++++ +.+. +.|+++++||+++ +|..|.+++.+.++++.|++|+|+. ++.++++|..|.++
T Consensus 2 ~~~~~~~~~~~~i~~~i~~~l~g--v~~~~~~~~l~~vatD~~rla~~~~~l~~~~f~~y~~~~--~i~~~~~l~el~ki 77 (245)
T 1rwz_A 2 IDVIMTGELLKTVTRAIVALVSE--ARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDE--EKTIGVDMDRIFDI 77 (245)
T ss_dssp EEEEEEHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSSEEEEEEEEGGGSSEEEESS--CEEEEEEHHHHHHH
T ss_pred eEEecchHHHHHHHHHHHHHhce--EEEEEcCCeEEEEEECCCcEEEEEEEEChHhCceEEcCC--CeEEEEEHHHHHHH
Confidence 789999999999999998 6667 9999999999999 5567789999999999999999984 58899999999999
Q ss_pred HHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcC
Q 022104 92 LNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEW 171 (302)
Q Consensus 92 L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~ 171 (302)
|+++++ + +.++|.+.+.+ .+.|.-++. .+.+.++++|.+.| ++.+.. .++.++++|++.+|++|+++++.
T Consensus 78 L~~~~~-~--~~v~i~~~~~~-~l~~~~~~~---~~~~~~rlidg~~p--~~~iP~-~~~~~~v~~~~~~l~~av~r~~~ 147 (245)
T 1rwz_A 78 SKSIST-K--DLVELIVEDES-TLKVKFGSV---EYKVALIDPSAIRK--EPRIPE-LELPAKIVMDAGEFKKAIAAADK 147 (245)
T ss_dssp HTTSCT-T--SEEEEEESSSS-EEEEEETTE---EEEEECBCGGGSCC--CCCCCC-CCCSEEEEEEHHHHHHHHHHHHT
T ss_pred HhhCCC-C--CEEEEEECCCC-eEEEEEeee---EEEEEEEccccCcc--CCCCCC-CcccEEEEEEHHHHHHHHHHHHh
Confidence 999864 2 67999998874 444443332 23459999998875 666432 26789999999999999999999
Q ss_pred CCCeEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE
Q 022104 172 PGSSIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 172 ~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i 250 (302)
.++.|+|.++ ++.++|++.| .|+++...+ .+..+.+++.+ ++.+|..+||..++|++++| ++|.+
T Consensus 148 ls~~V~l~~~--~~~l~ls~~~d~g~~~~~~~----~e~~~~~~g~~-~~i~Fn~~yL~d~lk~~~~s-------~~V~l 213 (245)
T 1rwz_A 148 ISDQVIFRSD--KEGFRIEAKGDVDSIVFHMT----ETELIEFNGGE-ARSMFSVDYLKEFCKVAGSG-------DLLTI 213 (245)
T ss_dssp TCSEEEEEEE--TTEEEEEEECSSCEEEEEEC----GGGSSEECCCC-EEEEEEHHHHHHHGGGCCTT-------CEEEE
T ss_pred cCCEEEEEEE--CCEEEEEEEccCcEEEEecC----CCccEEEEEee-EEEEEeHHHHHHHhhhccCC-------CeEEE
Confidence 9999999998 5699999999 999665444 34456788866 99999999999999999877 77777
Q ss_pred --cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCC
Q 022104 251 --GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDED 299 (302)
Q Consensus 251 --~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~ 299 (302)
+.++|+.+++.+.. ++ +++.||++|++++|
T Consensus 214 ~~~~~~p~~i~~~~~~-----------------~~--~~~~y~i~P~~~~~ 245 (245)
T 1rwz_A 214 HLGTNYPVRLVFELVG-----------------GR--AKVEYILAPRIESE 245 (245)
T ss_dssp EECSSSCEEEEEEETT-----------------TT--EEEEEEECCBCCC-
T ss_pred EECCCCCEEEEEEECC-----------------Cc--EEEEEEEccccCCC
Confidence 77899999998742 11 68999999999865
No 18
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=99.96 E-value=2.2e-28 Score=222.99 Aligned_cols=244 Identities=12% Similarity=0.110 Sum_probs=196.0
Q ss_pred EEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCC--CcceEEEEchhH
Q 022104 13 LVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQ--GRPRFGVSLGLF 88 (302)
Q Consensus 13 f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~--~~~~fgInL~~L 88 (302)
|+..-.+++.|+++++||+ +.++ ++|+|+++||+++ ||++|++++++.|+++.|++|+|+.+ .+..+|||+..|
T Consensus 3 ~~i~~~~~~~~~k~i~als~l~~e--~~~~~~~~gl~l~a~d~S~va~v~l~~~~~fF~~Y~~~~~~~~~~~~gv~~k~l 80 (266)
T 3a1j_A 3 CLVTGGNVKVLGKAVHSLSRIGDE--LYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSF 80 (266)
T ss_dssp EEEETHHHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSCEEEEEEECGGGSSEEECCCSSSCCCCEEEEHHHH
T ss_pred eEEcchhHHHHHHHHHHHHhhCCc--EEEEEccCcEEEEEEcCcccEEEEEEEchHhhhheecCCCCCCcEEEEEEhhHH
Confidence 4444569999999999999 7777 9999999999999 89999999999999999999999832 258999999999
Q ss_pred HHHHHhCCCCC-CceEEEEEEcCC--CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHH
Q 022104 89 ADCLNTFSAPG-HSSLIEIRYPGP--DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEA 165 (302)
Q Consensus 89 ~~~L~~f~~~~-~~~~l~l~y~g~--~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a 165 (302)
.++||+.++.+ ..+.|+|+.+++ .+.+.|+..+. ....+.|+.++++.. ...++.. ++++++.|++..|+++
T Consensus 81 ~kilk~~~~~d~~vd~~~i~~~~~~~~l~~~~~~~~~--~~k~~~l~l~d~~~~--~~~~~~~-~~~~~i~~~s~~~~~~ 155 (266)
T 3a1j_A 81 LSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFG--VRKTHNLSFQDCESL--QAVFDPA-SCPHMLRAPARVLGEA 155 (266)
T ss_dssp HHHHCCHHHHHHHEEEEEEECCTTCSEEEEEEEEGGG--CEEEEEEECEECCCC--CCCCCGG-GCSEEEEEEHHHHHHH
T ss_pred HHHhCCcccccccceEEEEEEcCCCceEEEEEEccCC--ceEEEEEEEEccccc--cceechh-hCCceEEEChHHHHHH
Confidence 99999986411 015788888654 68888886552 335679999998863 4445444 7889999999999999
Q ss_pred HHHhcCCCCeEEEEEecCCCcEEEEEee-ce------EEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHH---hhccC
Q 022104 166 IDDLEWPGSSIQIKLQPVPPSVSFKGEG-HG------DLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRA---TTSNL 235 (302)
Q Consensus 166 ~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G------~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~---~~KAl 235 (302)
++++...+|+|+|.+++ ++++.|++.| .| ..++++. -+.+.++.+++.+|++.+|+++||+. +.|++
T Consensus 156 ~~~~~~~~d~v~i~~~~-~~~v~~~s~~~~~~~~~~~~~~t~~~--~~~~e~~~~~~~~~~~~tFslkyl~~~l~f~~~~ 232 (266)
T 3a1j_A 156 VLPFSPALAEVTLGIGR-GRRVILRSYHEEEADSTAKAMVTEMC--LGEEDFQQLQAQEGVAITFCLKEFRGLLSFAESA 232 (266)
T ss_dssp HTTSCTTCCEEEEEECG-GGCEEEEEECCC-CCCSCCCCEEEEE--ECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHHT
T ss_pred HHhCCCChhhEEEEeCC-CCEEEEEEcccCccccccccceEEEE--ECHHHhhheecCCCCEEEEEHHHHHHHHHHHHhc
Confidence 99999999999999983 3589999966 32 3355555 34566889999999999999999999 88888
Q ss_pred CCCcccCCcceEEEE-cCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEec
Q 022104 236 PGCVIKHNRGSKLII-GRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKP 294 (302)
Q Consensus 236 ~lS~~~~~~~~~V~i-~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP 294 (302)
+++ -++.+ ..+.||.++| +. . ..+++||+|=
T Consensus 233 ~~~-------v~i~~~~~g~Pl~~~~--~~-----------------~--~~~~~f~LAT 264 (266)
T 3a1j_A 233 NLN-------LSIHFDAPGRPAIFTI--KD-----------------S--LLDGHFVLAT 264 (266)
T ss_dssp TCE-------EEEEECSTTSCEEEEE--EC-----------------S--SEEEEEEECC
T ss_pred CCc-------EEEEECCCCccEEEEE--eC-----------------C--cEEEEEEEee
Confidence 765 66666 5699999998 42 1 2589999984
No 19
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=99.96 E-value=6.1e-27 Score=215.14 Aligned_cols=247 Identities=11% Similarity=0.104 Sum_probs=188.6
Q ss_pred eEEEEECChH---HHHHHhcccc-cceeeeEEEEEeCCccEEE-EEc---CcEEEEEEEecccCceeEEeCC----CCcc
Q 022104 12 DLVCQLDNVQ---GLVDALSAVR-WKRHQDAVIELSEHGIILI-VEE---TGCLQAKVYLQRELFVRYEYSA----QGRP 79 (302)
Q Consensus 12 ~f~a~~~~a~---~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~---s~~~~~~~~l~~~~F~~Y~~~~----~~~~ 79 (302)
-|+|++.++. .|++++++|+ +.+. |++.|+++||.|+ +++ +|+..+...++.++|++|+|+. +.++
T Consensus 3 kF~a~l~~~~~~~~lkki~~ai~~L~k~--~~l~~t~~~l~~~~~d~~~~~~v~l~~~~~~~~~F~~Y~~~s~~~~~n~I 80 (281)
T 3a1j_B 3 KFRAKIVDGACLNHFTRISNMIAKLAKT--CTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEI 80 (281)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHCSE--EEEEECSSEEEEEECCCC--CCCEEEEEEEGGGTCSEEEEECSSSTTCCE
T ss_pred eEEEEecCcchHHHHHHHHHHHHHHhCE--EEEEEcCCEEEEEECCCCCCCeEEEEEEeehhcCCCCeEEeeccCCCCEE
Confidence 4999999877 9999999999 5555 9999999999999 455 7888888888889999999982 2369
Q ss_pred eEEEEchhHHHHHHhCCCCCCceEEEEEEcC-CCeEEEEEEC-----CCCCeEE-EEEEEecCCCCccCccccCCCC-Cc
Q 022104 80 RFGVSLGLFADCLNTFSAPGHSSLIEIRYPG-PDMQLLVKSV-----DSPDACI-YAEVRTRIPDMISWDYNFEPAG-ST 151 (302)
Q Consensus 80 ~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g-~~l~l~le~~-----~~~~~~~-~~~i~t~e~d~~~ld~~f~~~~-~~ 151 (302)
.||+|++.|.++||++++ .+.++|+... ....|.||.. +..+.++ ++.++++++.+. ..+. .|.. ++
T Consensus 81 ~l~v~~~~L~k~Lk~a~n---~~~~~ikL~k~~~p~L~fe~~~~~~~~~~~~v~~dipvkll~~~~~-e~l~-~P~~~~~ 155 (281)
T 3a1j_B 81 YLELTSENLSRALKTAQN---ARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLW-KDLQ-EPVVPDP 155 (281)
T ss_dssp EEEEEHHHHHHHGGGGGG---EEEEEEEEECSSSCEEEEEEEECCSSSCCCEEEEEEECEECCGGGG-GGGS-CCCCCCC
T ss_pred EEEEeHHHHHHHHHhcCC---CCeEEEEeccCCCCEEEEEEEcccCCCCceEEEEEeeeEEcCHHHH-hhcC-CCCCCCC
Confidence 999999999999999975 3678888533 3456666655 3344443 578898886331 0111 1111 46
Q ss_pred cEEEEEeh-HHHHHHHHHhcCCCCeEEEEEecCCCc-EEEEEee-ceEEEEEEeccCC-----CCcEEEEEeCcceEEEE
Q 022104 152 PLTFTVKS-AALKEAIDDLEWPGSSIQIKLQPVPPS-VSFKGEG-HGDLQIDFMYYVN-----TDLLIAFHCDREVSYRY 223 (302)
Q Consensus 152 ~~~v~m~s-~~l~~a~~dL~~~sd~v~i~~~p~~~~-~~~s~~G-~G~~~i~~~~~~~-----s~~l~~f~~~e~v~~~Y 223 (302)
.+.|.||+ ..|++++++|...|++|+|.++ +.+ ++|+++| .|++.+.|..... .+.-+..+..++++.+|
T Consensus 156 dv~i~lPsl~~~~~iv~~lk~i~d~v~i~a~--~~G~l~f~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~sv~~ 233 (281)
T 3a1j_B 156 DVSIYLPVLKTMKSVVEKMKNISNHLVIEAN--LDGELNLKIETELVCVTTHFKDLGNPPLASESTHEDRNVEHMAEVHI 233 (281)
T ss_dssp SEEEECCCHHHHHHHHHHHHTTCSEEEEEEC--TTSCEEEEEECSSEEEEEEECCCCCCCC----------CCCCEEEEE
T ss_pred CeEEECCCHHHHHHHHHHHhccCCeEEEEEE--CCCeEEEEEEeeeEEEEEEEcCCCCCCCCccccccccCCCccEEEEE
Confidence 68999999 7999999999999999999998 445 9999999 9999999963100 01113466778999999
Q ss_pred ehhhHHHhhccCCCCcccCCcceEEE-EcCCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEe
Q 022104 224 KYKFLRATTSNLPGCVIKHNRGSKLI-IGRGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVK 293 (302)
Q Consensus 224 ~l~yL~~~~KAl~lS~~~~~~~~~V~-i~~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~a 293 (302)
+++||..++||.++| ....+. |..+.||.+ |.+.. .|++.||+.
T Consensus 234 ~~k~l~~f~k~~~ls-----~~v~~~~i~~~~~l~~-y~~~~--------------------~g~l~yylp 278 (281)
T 3a1j_B 234 DIRKLLQFLAGQQVN-----PTKALCNIVNNKMVHF-DLLHE--------------------DVSLQYFIP 278 (281)
T ss_dssp EHHHHHHHHHHCCSC-----CSEEEEEEETTTEEEE-EEESS--------------------SCEEEEEEE
T ss_pred EHHHHHHhhCcccCC-----CcEEEEEEeCCceEEE-EEeCC--------------------cEEEEEEee
Confidence 999999999999988 333333 578999999 88642 589999985
No 20
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=99.80 E-value=3.2e-18 Score=158.03 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=191.6
Q ss_pred EEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEE-EEcCcEEEEEEEecccCceeEEeCCC--CcceEEEEchhH
Q 022104 13 LVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILI-VEETGCLQAKVYLQRELFVRYEYSAQ--GRPRFGVSLGLF 88 (302)
Q Consensus 13 f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~-vd~s~~~~~~~~l~~~~F~~Y~~~~~--~~~~fgInL~~L 88 (302)
+...-.++|.|.++|.|++ +.|+ +.++++++||+++ ++++|++.+.+.++++.|++|+++.. +.+.++|++..|
T Consensus 3 ~~i~g~~~K~f~kai~~LskigdE--l~~e~~~dgL~LravNsSrSA~~~~~f~~~FF~~Y~~~~~~~~~~~c~i~~K~l 80 (296)
T 3g65_A 3 CLVTGGNVKVLGKAVHSLSRIGDE--LYLEPLEDGLSLRTVNSSRSAYACFLFAPLFFQQYQAATPGQDLLRCKILMKSF 80 (296)
T ss_dssp EEEETHHHHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEECTTSCEEEEEEETTSSCCCCCC-------CCEEEEHHHH
T ss_pred EEEecccHHHHHHHHHHHHhhCce--EEEEEcCCeEEEEEECCcceEEEEEEeChHHhhheecCCCCCccEEEEEEhHHH
Confidence 4455578999999999998 8888 9999999999999 88999999999999999999999742 257899999999
Q ss_pred HHHHHhCCCCC-CceEEEEEEcCC--CeEEEEEE-CCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHH
Q 022104 89 ADCLNTFSAPG-HSSLIEIRYPGP--DMQLLVKS-VDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKE 164 (302)
Q Consensus 89 ~~~L~~f~~~~-~~~~l~l~y~g~--~l~l~le~-~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~ 164 (302)
++++|...+.+ .-..|.|+.+++ .+.+.|.- +|+.++. .|...+.+. +...|+.. .+++++.+++..|++
T Consensus 81 l~vfr~~~~~d~~ve~c~i~l~~~~~rl~i~l~ck~gi~Kt~---~l~~~~~~~--l~a~~~~~-~~~n~~~i~~~~l~e 154 (296)
T 3g65_A 81 LSVFRSLAMLEKTVEKCCISLNGRSSRLVVQLHCKFGVRKTH---NLSFQDCES--LQAVFDPA-SCPHMLRAPARVLGE 154 (296)
T ss_dssp HTTTSSTTC----CCEEEEEECCC---EEEEEECGGGCEEEE---EECCCCCCC--CCCCCCGG-GCSCEEEEEHHHHHH
T ss_pred HHHhccccccccceeEEEEEEeCCCCEEEEEEEeCCCeEEEE---EEEeEeccc--cccccCch-hCcEEEEEchHHHHH
Confidence 88888764321 235678887765 56666653 4555444 777666665 35556655 668999999999999
Q ss_pred HHHHhcCCCCeEEEEEecCCCcEEEEEee-c------eEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCC
Q 022104 165 AIDDLEWPGSSIQIKLQPVPPSVSFKGEG-H------GDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPG 237 (302)
Q Consensus 165 a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~------G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~l 237 (302)
++.......+.|+|.++| ++.+.|++.+ - +..++++. -+.+.+..+++.+++..+|.+++|+.++.....
T Consensus 155 ~l~~f~~~~eevtl~~~~-~~~v~~~s~~e~~~d~~~~~~~Tel~--i~~~ef~~~~v~~~~~itf~lKefrail~~ae~ 231 (296)
T 3g65_A 155 AVLPFSPALAEVTLGIGR-GRRVILRSYHEEEADSTAKAMVTEMC--LGEEDFQQLQAQEGVAITFCLKEFRGLLSFAES 231 (296)
T ss_dssp HSTTSCTTCCEEEEEEET-TTEEEEEECCC-----CCCCCEEEEE--ECGGGCSEEECCTTCEEEEEHHHHHHHHHHHHH
T ss_pred HHHhCcCCcceEEEEECC-CCeEEEEEeccccccccCceEEEEEE--EChhHheeEecCCCcEEEEEHHHHHHHHHHHHh
Confidence 999999999999999975 3588899874 2 55666666 456778999999999999999999999876532
Q ss_pred CcccCCcceEEEE--c-CCceEEEEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 238 CVIKHNRGSKLII--G-RGGMLKVQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 238 S~~~~~~~~~V~i--~-~~g~L~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
....|++ + ...||.+.|. . ...-++|++|+.-+.+.
T Consensus 232 ------~~~~i~i~f~~pG~Pl~~~~~--~-------------------~~~~~~fvLaT~~~~~~ 270 (296)
T 3g65_A 232 ------ANLNLSIHFDAPGRPAIFTIK--D-------------------SLLDGHFVLATLSDTDS 270 (296)
T ss_dssp ------TTCEEEEECCSTTSCEEEEEE--C-------------------SSCEEEEEECCCCSSSC
T ss_pred ------cCCeEEEEECCCCCcEEEEEe--C-------------------CcEEEEEEEEECCCCCC
Confidence 2367777 4 5889987764 2 13667999999988664
No 21
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.66 E-value=5.5e-16 Score=134.60 Aligned_cols=89 Identities=16% Similarity=0.298 Sum_probs=74.8
Q ss_pred CCcEEEEEee-ceEEEEEEeccCC---CCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE--cCCceEE
Q 022104 184 PPSVSFKGEG-HGDLQIDFMYYVN---TDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII--GRGGMLK 257 (302)
Q Consensus 184 ~~~~~~s~~G-~G~~~i~~~~~~~---s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i--~~~g~L~ 257 (302)
+++++|+++| +|+++|.+....+ .+..+++++++|++++|+++||+.++||.++| ..|.| +.+.||.
T Consensus 106 kd~v~Fs~~GD~G~~~i~l~~~~~~dk~e~~v~ie~~e~v~~~fsl~YL~~f~Ka~~ls-------~~V~l~l~~~~Pl~ 178 (200)
T 3pge_A 106 GETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS-------DRVGIRLSSEAPAL 178 (200)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCSSSCTTCBEEEESSCEEEEEEHHHHHHHGGGGGGC-------SEEEEEECSSSCEE
T ss_pred CceEEEEeeccCCeEEEEEecCCCCCCcccceEEEeCCcceeeEhHHHHHHHhccccCC-------CeEEEEEcCCCCEE
Confidence 6789999999 9999999973211 24478899999999999999999999999998 67776 9999999
Q ss_pred EEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCCCCC
Q 022104 258 VQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEEDEDT 300 (302)
Q Consensus 258 ~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d~~~ 300 (302)
++|.|. .|+|+|||||++++||
T Consensus 179 l~y~i~---------------------~G~l~f~LAPrie~~~ 200 (200)
T 3pge_A 179 FQFDLK---------------------SGFLQFFLAPKFNDEE 200 (200)
T ss_dssp EEEEET---------------------TEEEEEEECCCCC---
T ss_pred EEEEEC---------------------CEEEEEEECCccCCCC
Confidence 999983 3899999999999875
No 22
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.58 E-value=1.5e-14 Score=123.04 Aligned_cols=86 Identities=16% Similarity=0.288 Sum_probs=74.3
Q ss_pred CCcEEEEEee-ceEEEEEEeccCC---CCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE--cCCceEE
Q 022104 184 PPSVSFKGEG-HGDLQIDFMYYVN---TDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII--GRGGMLK 257 (302)
Q Consensus 184 ~~~~~~s~~G-~G~~~i~~~~~~~---s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i--~~~g~L~ 257 (302)
+.+++|+++| +|+++|.+....+ .+..+++++++|++++|+++||+.++||.++| +.|.| +++.||.
T Consensus 78 k~~vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~~~~~~~~fsl~yl~~~~ka~~~s-------~~v~l~~~~~~Pl~ 150 (169)
T 3l0w_B 78 GETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLS-------DRVGIRLSSEAPAL 150 (169)
T ss_dssp -CCEEEEEECSSCEEEEEECCBCCSSCGGGCBEEEESSCEEEEEEHHHHHHHGGGGGGC-------SEEEEEECSSSCEE
T ss_pred cccccccccCcccceeEEEecCCCCCCcccceEEecCCcceEEEhHHHHHHHhccccCC-------CeEEEEEcCCCCEE
Confidence 5799999999 9999999973211 13468899999999999999999999999998 67777 9999999
Q ss_pred EEEEEeecccCCCCCCCCCCCcCCCCceeEEEEEEecCCC
Q 022104 258 VQHLVSVARTSNQHPHTDSAGYQQPSQIAYIEFFVKPEED 297 (302)
Q Consensus 258 ~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~f~~aP~~d 297 (302)
++|.+. .|+++||+|||+|
T Consensus 151 ~~~~~~---------------------~g~~~~~lAPri~ 169 (169)
T 3l0w_B 151 FQFDLK---------------------SGFLQFFLAPKFN 169 (169)
T ss_dssp EEEEET---------------------TEEEEEEECCCCC
T ss_pred EEEEEC---------------------CEEEEEEEccccC
Confidence 999983 3899999999986
No 23
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=98.81 E-value=7.1e-07 Score=84.56 Aligned_cols=202 Identities=13% Similarity=0.211 Sum_probs=145.8
Q ss_pred CChHHHHHHhcccccce-ee-------eEEEEEeCCccEEEEEcCcE-EEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWKR-HQ-------DAVIELSEHGIILIVEETGC-LQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d-~~-------~a~~~is~~Gi~l~vd~s~~-~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+++.|+++++.+.|.- .+ -+.+++++++|++...|+|- +++...++.+ | +..+.++-..+
T Consensus 141 i~~~~L~~~I~r~~~a~s~~e~r~~l~GV~l~~~~~~l~~vAtDg~rla~~~~~~~~~----~------~~~~iip~k~l 210 (378)
T 1vpk_A 141 VDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRLVASDGFRLALAEEQIENE----E------EASFLLSLKSM 210 (378)
T ss_dssp EEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEETTEEEEEEECSSEEEEEEEECCCC----S------CEEEEEEHHHH
T ss_pred ECHHHHHHHHhheEEEEECCCCcceeeEEEEEEECCEEEEEEeCcccEEEEEEecCCC----C------cceEEEEchHH
Confidence 35788888888887432 22 28999999999999777654 4666655432 1 24688999999
Q ss_pred HHHHHhCCCCCCce-EEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCcccc-CCCCCccEEEEEehHHHHHHH
Q 022104 89 ADCLNTFSAPGHSS-LIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNF-EPAGSTPLTFTVKSAALKEAI 166 (302)
Q Consensus 89 ~~~L~~f~~~~~~~-~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f-~~~~~~~~~v~m~s~~l~~a~ 166 (302)
.+.+++++..+ . .++|.+.+. .+.|+.++ +. +..+++|..-| ++.- .|. ++..++.+....|.+|+
T Consensus 211 ~el~k~L~~~~--~~~V~i~~~~~--~i~f~~~~--~~---~~srLidg~fP--dy~~vip~-~~~~~~~v~~~~l~~al 278 (378)
T 1vpk_A 211 KEVQNVLDNTT--EPTITVRYDGR--RVSLSTND--VE---TVMRVVDAEFP--DYKRVIPE-TFKTKVVVSRKELRESL 278 (378)
T ss_dssp HHHHHHHHTCC--CSEEEEEECSS--EEEEECSS--EE---EEEECCSSCCC--CGGGGSCS-CCSEEEEEEHHHHHHHH
T ss_pred HHHHHhhccCC--CceEEEEEcCC--EEEEEECC--EE---EEEEeccccCC--CHHHhccc-CCCeEEEEEHHHHHHHH
Confidence 99999886422 4 788888765 44444333 23 36777776554 4432 222 67789999999999999
Q ss_pred HHhcCCCCe----EEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 167 DDLEWPGSS----IQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 167 ~dL~~~sd~----v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
+.+...++. |.+.+. ++.+.+++.+ .|+++-+++ ..++ .++++-.|..+||..+.|++. +
T Consensus 279 ~Rv~~~s~~~~~~v~l~~~--~~~l~i~a~~~d~g~a~e~l~--------~~~~-G~~~~i~fN~~yL~d~L~~~~-~-- 344 (378)
T 1vpk_A 279 KRVMVIASKGSESVKFEIE--ENVMRLVSKSPDYGEVVDEVE--------VQKE-GEDLVIAFNPKFIEDVLKHIE-T-- 344 (378)
T ss_dssp HHHHHHHTTTTCCEEEEEC--SSEEEEEEEETTTEEEEEEEE--------CEEE-ECCEEEEECHHHHHHHHHHCC-S--
T ss_pred HHHHHHhcCCCceEEEEEe--CCEEEEEEcCCccceeEEEEE--------EEec-CCeEEEEEcHHHHHHHHhcCC-C--
Confidence 998765443 888887 6799999988 899888876 1244 368899999999999999996 3
Q ss_pred cCCcceEEEE---cCCceEEEEE
Q 022104 241 KHNRGSKLII---GRGGMLKVQH 260 (302)
Q Consensus 241 ~~~~~~~V~i---~~~g~L~~q~ 260 (302)
..|.+ +...|+.++.
T Consensus 345 -----~~v~l~~~~~~~p~~i~~ 362 (378)
T 1vpk_A 345 -----EEIEMNFVDSTSPCQINP 362 (378)
T ss_dssp -----SEEEEEESCTTSCEEEEE
T ss_pred -----CEEEEEECCCCCCEEEEc
Confidence 66777 5568886653
No 24
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=98.68 E-value=8.8e-06 Score=77.11 Aligned_cols=202 Identities=10% Similarity=0.116 Sum_probs=143.4
Q ss_pred ChHHHHHHhcccccc--e-e-----eeEEEEEeCC-ccEEEEEcCcE-EEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 19 NVQGLVDALSAVRWK--R-H-----QDAVIELSEH-GIILIVEETGC-LQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 19 ~a~~l~~iL~aI~~~--d-~-----~~a~~~is~~-Gi~l~vd~s~~-~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
++..|+++++...|. . + .-+.|++.++ +|++..-|+|- ++..+.++.+. . ...+-|.-..|
T Consensus 138 ~~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~~l~~vATDg~RLa~~~~~~~~~~-~--------~~~~iiP~k~l 208 (378)
T 2avt_A 138 KTKLLKSIIAETAFAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTS-A--------DFMVVLPSKSL 208 (378)
T ss_dssp EHHHHHHHHHHHGGGSCCCTTSGGGGEEEEEEETTTEEEEEEECSSEEEEEEEECSSCC-C--------CEEEEEEHHHH
T ss_pred CHHHHHHHHhheEEEEECCCCcceeEEEEEEECCCCeEEEEEecCeeEEEEEeccCCCC-C--------ccEEEEEhHHH
Confidence 577888888876653 1 1 2389999999 99999777664 57777765432 1 24566888889
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCcccc-CCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNF-EPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f-~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.+..++++..+ ..++|.+.+. .+.|..++ +. +..+++|..-| ++.- .+. ++..++.+....|.+|++
T Consensus 209 ~el~kll~~~~--~~v~i~~~~~--~i~f~~~~--~~---~~srLidg~fP--dy~~viP~-~~~~~~~v~~~~l~~al~ 276 (378)
T 2avt_A 209 REFSAVFTDDI--ETVEVFFSPS--QILFRSEH--IS---FYTRLLEGNYP--DTDRLLMT-EFETEVVFNTQSLRHAME 276 (378)
T ss_dssp HHHHHHSCTTC--CEEEEEECSS--EEEEECSS--EE---EEEECCCSCCC--CCGGGSCC-CCSEEEEEEHHHHHHHHH
T ss_pred HHHHHhcccCC--ceEEEEEcCC--EEEEEECC--EE---EEEEEecccCC--ChhhcCCC-CCCEEEEEEHHHHHHHHH
Confidence 99999986322 5688888655 44444333 23 36777776544 4432 222 567899999999999999
Q ss_pred HhcCCCC-----eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcc
Q 022104 168 DLEWPGS-----SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVI 240 (302)
Q Consensus 168 dL~~~sd-----~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~ 240 (302)
.+...++ .|.+.+. ++.+.+++.+ .|+++-+++. ..++ .++.+-.|..+||..+.|++. +
T Consensus 277 Rvs~ls~~~~~~~v~l~~~--~~~l~l~a~~~e~g~a~e~l~~-------~~~~-Ge~~~I~FN~~YL~d~L~~~~-~-- 343 (378)
T 2avt_A 277 RAFLISNATQNGTVKLEIT--QNHISAHVNSPEVGKVNEDLDI-------VSQS-GSDLTISFNPTYLIESLKAIK-S-- 343 (378)
T ss_dssp HHHHHHTTSTTCCEEEEEE--TTEEEEEEEETTTEEEEEECCC-------SEEE-ECCEEEEECHHHHHHHHHTCC-S--
T ss_pred HHHHHhccCCCceEEEEEe--CCEEEEEEeCCCCceeEEEEee-------eeec-CCeEEEEEcHHHHHHHHhcCC-C--
Confidence 9876443 3888887 6799999988 8988877761 1244 468899999999999999996 3
Q ss_pred cCCcceEEEE---cCCceEEEE
Q 022104 241 KHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 241 ~~~~~~~V~i---~~~g~L~~q 259 (302)
..|.+ +...|+.++
T Consensus 344 -----~~v~l~~~~~~~p~~i~ 360 (378)
T 2avt_A 344 -----ETVKIHFLSPVRPFTLT 360 (378)
T ss_dssp -----SEEEEEECCTTSCEEEE
T ss_pred -----CEEEEEECCCCCCEEEE
Confidence 66777 556888655
No 25
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=98.64 E-value=8.6e-06 Score=76.84 Aligned_cols=202 Identities=7% Similarity=0.099 Sum_probs=143.4
Q ss_pred CChHHHHHHhcccccce---e-----eeEEEEEeCCccEEEEEcCcE-EEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWKR---H-----QDAVIELSEHGIILIVEETGC-LQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d---~-----~~a~~~is~~Gi~l~vd~s~~-~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++...|.- + .-+.|++.+++|++..-|+|- ++..+.++.+.. + ..+-|.-..|
T Consensus 130 i~~~~l~~~i~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~~~-~--------~~~iiP~k~l 200 (366)
T 3d1g_A 130 LPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLP-S--------HSVIVPRKGV 200 (366)
T ss_dssp ECHHHHHHHHHHHGGGSCSSCSSGGGSEEEEEEEEEEEEEEEECSSEEEEEEEEEEEEEE-E--------EEEEEEHHHH
T ss_pred ECHHHHHHHHhheeEEeccCCCccceEEEEEEEeCCEEEEEEeCCccEEEEEeccCCCCc-c--------cEEEEEHHHH
Confidence 46788888888766441 1 238899999999999777664 577777755321 1 2456788889
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAID 167 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~ 167 (302)
.+..|+++..+ ..++|.+.+.. +.|+.++ ... ..+++|..-| ++. ..|. ++..++.+....|.+|++
T Consensus 201 ~el~kll~~~~--~~v~i~~~~~~--i~f~~~~--~~~---~srLidg~fP--dy~~viP~-~~~~~~~v~~~~l~~al~ 268 (366)
T 3d1g_A 201 IELMRMLDGGD--NPLRVQIGSNN--IRAHVGD--FIF---TSKLVDGRFP--DYRRVLPK-NPDKHLEAGCDLLKQAFA 268 (366)
T ss_dssp HHHHHTCCSSS--CCEEEEECSSE--EEEEETT--EEE---EEECCSSCCC--CHHHHSCS-CCCEEEEEEHHHHHHHHH
T ss_pred HHHHHhcccCC--ccEEEEEcCCE--EEEEECC--EEE---EEEEecccCC--ChhhcCCC-CCCeEEEEEHHHHHHHHH
Confidence 99999986422 46888886654 4444333 233 6777776554 443 1222 667899999999999999
Q ss_pred HhcCCCC----eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCccc
Q 022104 168 DLEWPGS----SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIK 241 (302)
Q Consensus 168 dL~~~sd----~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~ 241 (302)
.+...++ .|.+.+. ++.+.+++.+ .|+++-+++.. ++ .++.+-.|..+||..+.|++. +
T Consensus 269 Rvsils~~~~~~v~l~~~--~~~l~i~a~~~e~g~a~e~l~~~--------~~-Ge~~~I~fN~~YL~d~L~~~~-~--- 333 (366)
T 3d1g_A 269 RAAILSNEKFRGVRLYVS--ENQLKITANNPEQEEAEEILDVT--------YS-GAEMEIGFNVSYVLDVLNALK-C--- 333 (366)
T ss_dssp HHHHTSCTTTCEEEEEEE--TTEEEEEEECTTCCEEEEEEECB--------CC-SCCEEEEEEHHHHHHHHHHCC-S---
T ss_pred HHHHHhcCCCceEEEEEe--CCEEEEEEcCCCCceEEEEEEEE--------ec-CCcEEEEEcHHHHHHHHhcCC-C---
Confidence 9876553 4888887 6799999988 89888777621 22 357888999999999999996 3
Q ss_pred CCcceEEEE---cCCceEEEE
Q 022104 242 HNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 242 ~~~~~~V~i---~~~g~L~~q 259 (302)
..|.+ +...|+.++
T Consensus 334 ----~~v~l~~~~~~~p~~i~ 350 (366)
T 3d1g_A 334 ----ENVRMMLTDSVSSVQIE 350 (366)
T ss_dssp ----SEEEEEECCTTSCEEEE
T ss_pred ----CEEEEEECCCCCCEEEE
Confidence 66777 556788655
No 26
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=98.35 E-value=0.00036 Score=65.82 Aligned_cols=202 Identities=7% Similarity=0.110 Sum_probs=145.6
Q ss_pred ChHHHHHHhcccccce---e-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 19 NVQGLVDALSAVRWKR---H-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 19 ~a~~l~~iL~aI~~~d---~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
++..|+++++...|.- + .-+.|++.+++|++..-|+|-+ .....++.. .. +..+-|+-..|.
T Consensus 131 ~~~~L~~~I~~t~fA~s~de~r~~L~Gv~~~~~~~~l~~vATDg~RLa~~~~~~~~~------~~---~~~~iIP~k~l~ 201 (371)
T 3t0p_A 131 SQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENKLRVVSLDGHRISIRYIEMKNH------YD---SKKVVVPGKTLQ 201 (371)
T ss_dssp EHHHHHHHHHTTGGGSCSSSSSTGGGEEEEEEEEEEEEEEEECSSEEEEEEEEEEEE------EE---EEEEEEEHHHHH
T ss_pred CHHHHHHHHhheeEEeeCCCCchhceEEEEEEECCEEEEEEecceEEEEEEeccCCC------CC---ceEEEEEHHHHH
Confidence 5788999998877541 1 2388999999999998888754 666655432 11 346789999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHHHHHHHH
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
++.++++. +.+..++|.+.+..+ .|+.++ .. +.-+++|-.-| ++. ..|. ++..++.+....|.+|++-
T Consensus 202 el~kll~~-~~~~~V~i~~~~~~i--~f~~~~--~~---~~srLidG~fP--dy~~viP~-~~~~~~~v~r~~l~~al~R 270 (371)
T 3t0p_A 202 EISKIIPG-SADEDVVIYITNNHI--VFEFEN--TT---VVSRLIEGEYF--KIDQMLSS-DYDTKVRINKRELLDCIDR 270 (371)
T ss_dssp HHHHHCCC-CTTSEEEEEEETTEE--EEEETT--EE---EEEECCCSCCC--CCGGGCCC-CCSEEEEEEHHHHHHHHHH
T ss_pred HHHHhcCc-CCCceEEEEEcCCEE--EEEECC--EE---EEEEEecccCC--Chhhhccc-cCCEEEEEEHHHHHHHHHH
Confidence 99999863 223679999977644 444333 23 36677776654 553 2222 6678999999999999999
Q ss_pred hcCCCC-----eEEEEEecCCCcEEEEEee-ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccC
Q 022104 169 LEWPGS-----SIQIKLQPVPPSVSFKGEG-HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKH 242 (302)
Q Consensus 169 L~~~sd-----~v~i~~~p~~~~~~~s~~G-~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~ 242 (302)
+...++ .|.+.+. ++.+.+++.+ .|+++-+++. .++ .++++-.|..+||..+.+++.
T Consensus 271 vs~ls~e~~~~~V~l~~~--~~~l~i~~~~~~g~a~E~i~~--------~~~-Ge~~~I~FN~~yLld~L~~~~------ 333 (371)
T 3t0p_A 271 ATLLVKEGDKKPIIMNIT--DGNMELRINSFIGSMNEDIDI--------DKD-GKDIMIGFNPKFFIDALRVID------ 333 (371)
T ss_dssp HHTTCCC-CCCCEEEEEE--TTEEEEEEECSSEEEEEEEEC--------EEE-ECCEEEEECHHHHHHHHTTCC------
T ss_pred HHHhhccCCCceEEEEEe--CCEEEEEEeCCCCcEEEEEEE--------Eec-CCcEEEEEchHHHHHHHhCCC------
Confidence 987652 3888887 6799999998 9998877761 133 367899999999999999995
Q ss_pred CcceEEEE---cCCceEEEE
Q 022104 243 NRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 243 ~~~~~V~i---~~~g~L~~q 259 (302)
+..|.+ +...|..++
T Consensus 334 --~~~v~l~~~~~~~p~~i~ 351 (371)
T 3t0p_A 334 --EEEVNLYMVNPKAPCFIK 351 (371)
T ss_dssp --CSEEEEEESCTTSCEEEE
T ss_pred --CCeEEEEECCCCCcEEEE
Confidence 356776 557787554
No 27
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=97.99 E-value=0.0024 Score=60.95 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=145.4
Q ss_pred CChHHHHHHhcccccc---ee-----eeEEEEEeCCccEEEEEcCcEE-EEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVRWK---RH-----QDAVIELSEHGIILIVEETGCL-QAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~---d~-----~~a~~~is~~Gi~l~vd~s~~~-~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-++..|+++++...|. ++ .-+.|++.+++|++..-|+|-+ .....+..... +....+=|+-..|
T Consensus 145 i~~~~L~~~I~~t~fA~s~de~rp~L~Gv~~~~~~~~l~~VATDghRLA~~~~~~~~~~~-------~~~~~~iIP~k~l 217 (408)
T 3p16_A 145 LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSP-------DIEAAVLVPAKTL 217 (408)
T ss_dssp ECHHHHHHHHHHHTTSSCCSSSCCCSCEEEEEEETTEEEEEEECSSEEEEEEEECBCSSS-------SCEEEEEEEHHHH
T ss_pred EcHHHHHHHHhhheecccCccchhhceEEEEEEECCEEEEEEcCcceEEEEeccccccCC-------CCceeEEEEHHHH
Confidence 4678899998887754 11 2378999999999998887754 66666543321 1124588899999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCCC-----eEEEEEECCCCCeEEEEEEEecCCCCccCccc-cCCCCCccEEEEEehHHH
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGPD-----MQLLVKSVDSPDACIYAEVRTRIPDMISWDYN-FEPAGSTPLTFTVKSAAL 162 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~~-----l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~-f~~~~~~~~~v~m~s~~l 162 (302)
.++.|+++. + ..++|.+.+.. -.+.|+.++ .. +.-+++|-.-| ++. ..+. ++..++.+....|
T Consensus 218 ~el~kll~~-~--~~V~i~~~~~~~~~~~~~i~f~~~~--~~---~~srLIdG~fP--dy~~vIP~-~~~~~v~v~r~~l 286 (408)
T 3p16_A 218 AEAAKAGIG-G--SDVRLSLGTGPGVGKDGLLGISGNG--KR---STTRLLDAEFP--KFRQLLPT-EHTAVATMDVAEL 286 (408)
T ss_dssp HHHHHTCCS-S--SCEEEESCSSSSCCSSCCCEEECSS--EE---EECCCCSSCCC--CGGGTCCS-SCSEEEEEEHHHH
T ss_pred HHHHHhcCC-C--CcEEEEEcCCcccccceEEEEEECC--EE---EEEEecccCCC--ChhhhCCC-CCCEEEEEEHHHH
Confidence 999999853 2 56888887631 244455333 22 25666766544 554 2232 6678999999999
Q ss_pred HHHHHHhcCCCC---eEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCC
Q 022104 163 KEAIDDLEWPGS---SIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPG 237 (302)
Q Consensus 163 ~~a~~dL~~~sd---~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~l 237 (302)
.+|++-+...++ .|++.+. ++.+.+++.+ .|+++-+++. .++ .++++-.|..+||..+.+++.
T Consensus 287 ~~al~Rvslls~~~~~V~l~~~--~~~l~i~a~~~e~g~a~E~i~~--------~~~-Ge~l~I~FN~~YLlD~L~~i~- 354 (408)
T 3p16_A 287 IEAIKLVALVADRGAQVRMEFA--DGSVRLSAGADDVGRAEEDLVV--------DYA-GEPLTIAFNPTYLTDGLSSLR- 354 (408)
T ss_dssp HHHHHHHHTTCCSSCCEEEEEE--TTEEEEEEECSSSCEEEEEEEC--------EEE-ESCCEEEECHHHHHHHHHHSC-
T ss_pred HHHHHHHHhhhcCCceEEEEEe--CCEEEEEEeCCCCceEEEEEEE--------EEe-CCcEEEEEeHHHHHHHHhccC-
Confidence 999999877654 4888887 6799999985 8988877761 132 257889999999999999996
Q ss_pred CcccCCcceEEEE---cCCceEEEE
Q 022104 238 CVIKHNRGSKLII---GRGGMLKVQ 259 (302)
Q Consensus 238 S~~~~~~~~~V~i---~~~g~L~~q 259 (302)
+..|.| +...|..++
T Consensus 355 -------~e~V~l~~~~~~~P~~i~ 372 (408)
T 3p16_A 355 -------SERVSFGFTTAGKPALLR 372 (408)
T ss_dssp -------SSEEEEEESCTTSCEEEE
T ss_pred -------CCeEEEEECCCCCcEEEE
Confidence 366777 667888665
No 28
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=96.62 E-value=0.007 Score=54.18 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=78.2
Q ss_pred CChHHHHHHhcccc-cceeeeEEEEEe-CCccEEEE--Ec---C--cEEEEEEEecccCceeEEeCCCCcceEEEEchhH
Q 022104 18 DNVQGLVDALSAVR-WKRHQDAVIELS-EHGIILIV--EE---T--GCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 18 ~~a~~l~~iL~aI~-~~d~~~a~~~is-~~Gi~l~v--d~---s--~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
-+++.|+++++.+. +.++ +++.++ ++|+.+.. |. + +.+...+.+..+-|.+|++.+ ++...++|.-|
T Consensus 147 ~~s~~~~~~~~~~~~~~d~--v~i~~~~~~~v~~~s~~~~~~~~~~~~~~t~~~~~~~e~~~~~~~~--~~~~tFslkyl 222 (266)
T 3a1j_A 147 APARVLGEAVLPFSPALAE--VTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQE--GVAITFCLKEF 222 (266)
T ss_dssp EEHHHHHHHHTTSCTTCCE--EEEEECGGGCEEEEEECCC-CCCSCCCCEEEEEECGGGCSEEECCT--TCEEEEEHHHH
T ss_pred EChHHHHHHHHhCCCChhh--EEEEeCCCCEEEEEEcccCccccccccceEEEEECHHHhhheecCC--CCEEEEEHHHH
Confidence 36889999999998 6666 999999 99999997 32 2 566888889999999999973 58899999999
Q ss_pred HHHHHhCCCCCCceEEEEEE--cCCCeEEEEEEC
Q 022104 89 ADCLNTFSAPGHSSLIEIRY--PGPDMQLLVKSV 120 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y--~g~~l~l~le~~ 120 (302)
..+++.....+ ..+++.| +|.|+.+.+++.
T Consensus 223 ~~~l~f~~~~~--~~v~i~~~~~g~Pl~~~~~~~ 254 (266)
T 3a1j_A 223 RGLLSFAESAN--LNLSIHFDAPGRPAIFTIKDS 254 (266)
T ss_dssp HHHHHHHHHTT--CEEEEEECSTTSCEEEEEECS
T ss_pred HHHHHHHHhcC--CcEEEEECCCCccEEEEEeCC
Confidence 99988874323 4577787 477999988543
No 29
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=96.62 E-value=0.025 Score=50.15 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=79.8
Q ss_pred EEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEe-e--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHH
Q 022104 154 TFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGE-G--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLR 229 (302)
Q Consensus 154 ~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~-G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~ 229 (302)
++++ .+..|++++..+...-+.+.|.++ ++++++.+- . +.-+.+.+| ++.+++|.|+++++....+..|.
T Consensus 3 ~a~~~~a~~lk~ii~ai~~lv~e~~~~~~--~~Gi~l~amD~s~valv~l~l~----~~~F~~Y~~d~~~~~gvnl~~l~ 76 (249)
T 3fds_C 3 KIVYPNAKDFFSFINSITNVTDSIILNFT--EDGIFSRHLTEDKVLMAIMRIP----KDVLSEYSIDSPTSVKLDVSSVK 76 (249)
T ss_dssp EEEESCHHHHHHHHHHHTTTCSSEEEEEC--SSEEEEEEECTTSSEEEEEEEE----GGGSSEEECSSCEEEEECHHHHH
T ss_pred EEEeCchHHHHHHHHHHHHHhCeEEEEEc--CCeEEEEEECCCcEEEEEEEEC----HHhCeEEECCCCeEEEEEHHHHH
Confidence 5567 689999999999999999999998 679999973 3 677888888 57899999999999999999999
Q ss_pred HhhccCCCCcccCCcceEEEE-cCCceEEEEEE
Q 022104 230 ATTSNLPGCVIKHNRGSKLII-GRGGMLKVQHL 261 (302)
Q Consensus 230 ~~~KAl~lS~~~~~~~~~V~i-~~~g~L~~q~~ 261 (302)
+++|... | +.+++.+ ++...|.++|.
T Consensus 77 kiLk~~~-~-----~~d~l~~~~~~~~l~i~~e 103 (249)
T 3fds_C 77 KILSKAS-S-----KKATIELTETDSGLKIIIR 103 (249)
T ss_dssp HHHTTCC-C-----SCEEEEEEECSSEEEEEEE
T ss_pred HHHHhhC-C-----CCCEEEEecCCCEEEEEEE
Confidence 9999875 1 3467888 55677777764
No 30
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=96.41 E-value=0.3 Score=42.56 Aligned_cols=158 Identities=9% Similarity=0.064 Sum_probs=100.0
Q ss_pred ChHHHHHHhcccccceeeeEEEEEeCCc-cEEEEEcCcEEEEEEEecccCceeEEeCC-CCcceEEEEchhHHHHHHhCC
Q 022104 19 NVQGLVDALSAVRWKRHQDAVIELSEHG-IILIVEETGCLQAKVYLQRELFVRYEYSA-QGRPRFGVSLGLFADCLNTFS 96 (302)
Q Consensus 19 ~a~~l~~iL~aI~~~d~~~a~~~is~~G-i~l~vd~s~~~~~~~~l~~~~F~~Y~~~~-~~~~~fgInL~~L~~~L~~f~ 96 (302)
+.+.|.++|++.. +...+.+.++++| +.|+.+.+......+-|=..-|.+|+... +.+..+.++-..|.++++.++
T Consensus 72 ~l~~l~kil~~~~--~~~~v~i~~~~~~~l~f~~~~~~~~~~~~rlidg~~p~~~iP~~~~~~~v~i~~~~l~~a~~r~~ 149 (249)
T 1iz5_A 72 NLDHLKKILKRGK--AKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAAS 149 (249)
T ss_dssp EHHHHHHHHTTCC--TTCEEEEEECSSSEEEEEEESSSEEEEEEECBCCCC-----CCCCCCEEEEEEHHHHHHHHHHHT
T ss_pred EHHHHHHHHHhCC--CCCEEEEEECCCCeEEEEEecCCEEEEEEEcccCCccCCCCCCCcceEEEEEEHHHHHHHHHHHH
Confidence 6778888888765 3334899999995 56666655455666666677789998763 345789999999999999987
Q ss_pred CCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCCCeE
Q 022104 97 APGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSI 176 (302)
Q Consensus 97 ~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~sd~v 176 (302)
.-+ +.++|...+..+.|.- .+..... .-++....... .+++- . ...++.....-|.++++-++. ++.|
T Consensus 150 ~ls--~~V~l~~~~~~l~ls~--~~d~g~~-~~~l~~~~~~~--~~~~~-g---e~~~i~Fn~~yL~d~lk~~~~-s~~V 217 (249)
T 1iz5_A 150 LVS--DSIKFIARENEFIMKA--EGETQEV-EIKLTLEDEGL--LDIEV-Q---EETKSAYGVSYLSDMVKGLGK-ADEV 217 (249)
T ss_dssp TTC--SEEEEEEETTEEEEEE--ECSSCEE-EEEEETTTTSS--SEEEE-S---SCEEEEEEHHHHHHHHTTSCT-TCEE
T ss_pred hcC--CEEEEEEECCEEEEEE--EecCceE-EEEEccCCCcc--EEEEc-C---CceEEEEeHHHHHHHhhhccC-CCeE
Confidence 543 4588888766555553 3322222 22333211111 12221 1 126899999999999999954 8999
Q ss_pred EEEEecCCCcEEEEE
Q 022104 177 QIKLQPVPPSVSFKG 191 (302)
Q Consensus 177 ~i~~~p~~~~~~~s~ 191 (302)
+|.+.++ .-+.+.-
T Consensus 218 ~l~~~~~-~p~~i~~ 231 (249)
T 1iz5_A 218 TIKFGNE-MPMQMEY 231 (249)
T ss_dssp EEEECTT-CCEEEEE
T ss_pred EEEEcCC-CCEEEEE
Confidence 9999864 3355554
No 31
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=96.37 E-value=0.65 Score=43.29 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=106.8
Q ss_pred EEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEE
Q 022104 38 AVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLV 117 (302)
Q Consensus 38 a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~l 117 (302)
+.+++.+++|+++.-|++. .+...++.+ ...+ +..+.|+-..|.++++.... ..++|...+. .+.+
T Consensus 45 vll~~~~~~L~l~aTD~~~-~~~~~i~~~------~~~~-~g~i~vpak~l~ei~r~Lp~----~~V~i~~~~~--~l~i 110 (378)
T 1vpk_A 45 FLFEVKDGNFYICATDLET-GVKATVNAA------EISG-EARFVVPGDVIQKMVKVLPD----EITELSLEGD--ALVI 110 (378)
T ss_dssp EEEEEETTEEEEEEECSSE-EEEEECCCS------EEEE-CEEEEEEC-CHHHHHTTCCS----SEEEEEEETT--EEEE
T ss_pred EEEEEECCEEEEEEEcCce-EEEEEEEEE------EccC-ceEEEEEhHHHHHHHHhCCC----CcEEEEEeCC--EEEE
Confidence 7889999999999777763 334444432 2111 35899999999999999863 3588877665 4555
Q ss_pred EECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCC-C-e-------EEEEEecCCCcEE
Q 022104 118 KSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPG-S-S-------IQIKLQPVPPSVS 188 (302)
Q Consensus 118 e~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~s-d-~-------v~i~~~p~~~~~~ 188 (302)
..+. ..+.+++++.++. +++... +....+.+++..|+++++...... . . |.+.+. ++.++
T Consensus 111 ~~g~-----~~f~l~~l~~~~f-P~~~~~---~~~~~~~i~~~~L~~~I~r~~~a~s~~e~r~~l~GV~l~~~--~~~l~ 179 (378)
T 1vpk_A 111 SSGS-----TVFRITTMPADEF-PEITPA---ESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELH--KNLLR 179 (378)
T ss_dssp EETT-----EEEEEECBCCTTS-CCCCCC---CSSEEEEEEHHHHHHHHHHHGGGSCCCTTCTTTSEEEEEEE--TTEEE
T ss_pred EECC-----EEEEEcccChHHC-CCCCCC---CCceEEEECHHHHHHHHhheEEEEECCCCcceeeEEEEEEE--CCEEE
Confidence 5333 3459999887642 233221 334589999999999999986532 2 2 778777 67899
Q ss_pred EEE-ee--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 189 FKG-EG--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 189 ~s~-~G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
+.+ .| ++..++.++ .+ .+....+.-++|..+.|.+.
T Consensus 180 ~vAtDg~rla~~~~~~~--~~----------~~~~~iip~k~l~el~k~L~ 218 (378)
T 1vpk_A 180 LVASDGFRLALAEEQIE--NE----------EEASFLLSLKSMKEVQNVLD 218 (378)
T ss_dssp EEEECSSEEEEEEEECC--CC----------SCEEEEEEHHHHHHHHHHHH
T ss_pred EEEeCcccEEEEEEecC--CC----------CcceEEEEchHHHHHHHhhc
Confidence 985 44 454555554 21 11355777888888888764
No 32
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=96.29 E-value=0.013 Score=53.45 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=84.4
Q ss_pred CChHHHHHHhcccccceeeeEEEEEe-CCccEEE--EEc----C-cEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 18 DNVQGLVDALSAVRWKRHQDAVIELS-EHGIILI--VEE----T-GCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d~~~a~~~is-~~Gi~l~--vd~----s-~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
-+++.|+.+|+-..-+ .+++++.++ ++.+.++ .|+ . +.+...+.+..+-|++|.+.+ +..+.++|..|.
T Consensus 147 i~~~~l~e~l~~f~~~-~eevtl~~~~~~~v~~~s~~e~~~d~~~~~~~Tel~i~~~ef~~~~v~~--~~~itf~lKefr 223 (296)
T 3g65_A 147 APARVLGEAVLPFSPA-LAEVTLGIGRGRRVILRSYHEEEADSTAKAMVTEMCLGEEDFQQLQAQE--GVAITFCLKEFR 223 (296)
T ss_dssp EEHHHHHHHSTTSCTT-CCEEEEEEETTTEEEEEECCC-----CCCCCEEEEEECGGGCSEEECCT--TCEEEEEHHHHH
T ss_pred EchHHHHHHHHhCcCC-cceEEEEECCCCeEEEEEeccccccccCceEEEEEEEChhHheeEecCC--CcEEEEEHHHHH
Confidence 3579999999988722 234999999 6888888 332 3 788999999999999999973 689999999999
Q ss_pred HHHHhCCCCCCceEEEEEE--cCCCeEEEEEECCCCCeEEEEEEEecC
Q 022104 90 DCLNTFSAPGHSSLIEIRY--PGPDMQLLVKSVDSPDACIYAEVRTRI 135 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y--~g~~l~l~le~~~~~~~~~~~~i~t~e 135 (302)
.+|..+...+ ..+++.| +|.|+.+.++..+. .| ++-+.|+.
T Consensus 224 ail~~ae~~~--~~i~i~f~~pG~Pl~~~~~~~~~--~~-~fvLaT~~ 266 (296)
T 3g65_A 224 GLLSFAESAN--LNLSIHFDAPGRPAIFTIKDSLL--DG-HFVLATLS 266 (296)
T ss_dssp HHHHHHHHTT--CEEEEECCSTTSCEEEEEECSSC--EE-EEEECCCC
T ss_pred HHHHHHHhcC--CeEEEEECCCCCcEEEEEeCCcE--EE-EEEEEECC
Confidence 9999986433 4677777 57899999996543 33 55666654
No 33
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=95.98 E-value=0.066 Score=47.18 Aligned_cols=101 Identities=11% Similarity=0.079 Sum_probs=77.2
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEEcCcEEEEEEEec-------ccCceeEEeCCCCcceE
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVEETGCLQAKVYLQ-------RELFVRYEYSAQGRPRF 81 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~-------~~~F~~Y~~~~~~~~~f 81 (302)
.+.-.+.+. .+.|+++++-+. +.+. +.+.+++++++|..+ +-.-.++..++ ++.+.+|++.+ +++.
T Consensus 132 ~~~~~i~~~-~~~l~~ai~r~~~~s~~--v~i~~~~~~l~ls~~-~d~g~~~~~~~~~~~~~~~~~~~~~~~~e--~~~i 205 (261)
T 1u7b_A 132 EYSCVVKMP-SGEFARICRDLSHIGDA--VVISCAKDGVKFSAS-GELGNGNIKLSQTSNVDKEEEAVTIEMNE--PVQL 205 (261)
T ss_dssp CCSEEEEEE-HHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEE-ETTEEEEEEECCCC----CCSCCEEEESS--CEEE
T ss_pred cccEEEEEE-HHHHHHHHHHHHhcCCE--EEEEEECCEEEEEEE-ecCceEEEEEecCCCCCCCccceEEecCC--cEEE
Confidence 344555555 488999999998 6666 999999999999976 34445666666 67788899973 6999
Q ss_pred EEEchhHHHHHHhCCCCCCceEEEEEEcCC-CeEEEEEE
Q 022104 82 GVSLGLFADCLNTFSAPGHSSLIEIRYPGP-DMQLLVKS 119 (302)
Q Consensus 82 gInL~~L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~ 119 (302)
+.|+.-|.++||..+.+ +.++|+..+. |+.|....
T Consensus 206 ~f~~~yL~~~lka~~~s---~~V~i~~~~~~P~~l~~~~ 241 (261)
T 1u7b_A 206 TFALRYLNFFTKATPLS---STVTLSMSADVPLVVEYKI 241 (261)
T ss_dssp EEEHHHHHHHGGGGGGC---SEEEEEECTTSCEEEEEEE
T ss_pred EEeHHHHHHHhCcccCC---CeEEEEECCCCCEEEEEEe
Confidence 99999999999998631 4677777654 88887764
No 34
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=95.82 E-value=0.22 Score=44.14 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=77.9
Q ss_pred EEEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee--ceEEEEEEeccCCCCcEEEEEeCcc-eEEEEehhhH
Q 022104 153 LTFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG--HGDLQIDFMYYVNTDLLIAFHCDRE-VSYRYKYKFL 228 (302)
Q Consensus 153 ~~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G--~G~~~i~~~~~~~s~~l~~f~~~e~-v~~~Y~l~yL 228 (302)
.++.+ ....|+++++.+ ...+.+.+.++ +.++++.+.. ..-+.+.+| ++.++++.|+++ ++..-.+..|
T Consensus 5 f~a~~~~a~~l~~il~ai-~l~~ea~~~~s--~~Gi~l~a~Ds~v~~v~l~l~----~~~F~~Y~~~~~~~~~gi~l~~l 77 (263)
T 3a1j_C 5 LVASLDNVRNLSTILKAI-HFREHATCFAT--KNGIKVTVENAKCVQANAFIQ----AGIFQEFKVQEESVTFRINLTVL 77 (263)
T ss_dssp EEEEESCTHHHHHHHHTT-CSSSEEEEEEE--TTEEEEEEEETTTEEEEEEEE----GGGSSEEEESSSCEEEEEEHHHH
T ss_pred EEEEeCCHHHHHHHHhhe-ecCcEEEEEEc--CCeEEEEEEeCCEEEEEEEEC----HHHCceEEEcCCCcEEEEEhHHH
Confidence 35566 789999999999 88889999999 6799999887 677888888 478999999988 9999999999
Q ss_pred HHhhccCCCCcccCCcceEEEE---cCCceEEEEEE
Q 022104 229 RATTSNLPGCVIKHNRGSKLII---GRGGMLKVQHL 261 (302)
Q Consensus 229 ~~~~KAl~lS~~~~~~~~~V~i---~~~g~L~~q~~ 261 (302)
.+++|...... .-.....++| +.+.+|.+.+.
T Consensus 78 ~k~L~~~~~~~-~~~d~~~l~i~~~~~~~~l~l~~e 112 (263)
T 3a1j_C 78 LDCLSIFGSSP-MPGTLTALRMCYQGYGYPLMLFLE 112 (263)
T ss_dssp HHHHTTTCSCC-CTTCCCEEEEEECSTTCCEEEEEE
T ss_pred HHHHHHhcCCc-CCCCceEEEEEECCCCCcEEEEEE
Confidence 99999875210 0001245664 44678877664
No 35
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=95.81 E-value=0.87 Score=39.74 Aligned_cols=151 Identities=11% Similarity=0.083 Sum_probs=100.3
Q ss_pred ChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCC-CCcceEEEEchhHHHHHHhCCC
Q 022104 19 NVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSA-QGRPRFGVSLGLFADCLNTFSA 97 (302)
Q Consensus 19 ~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~-~~~~~fgInL~~L~~~L~~f~~ 97 (302)
+...|.++|++.. +.+.+.+.++++-+.|+.++...-...+-|=..-|.+|...+ +-...+.++-+.|.++++.+..
T Consensus 72 ~l~~l~kiL~~~~--~~d~v~i~~~~~~l~~~~~~~~~~~~~~rLid~~~~~~~iP~~~~~~~v~~~s~~f~~~i~~~~~ 149 (245)
T 3fds_D 72 KLEDVNDILKRVL--KDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSD 149 (245)
T ss_dssp EHHHHHHHHTTCC--TTCEEEEEECSSEEEEEEESSSEEEEEEECCCCCCCCC----CCCSEEEEEEHHHHHHHHHHHTT
T ss_pred EHHHHHHHHHhcC--CCCEEEEEEeCCEEEEEEecCceEEEEEEeecCCcccCCCCCcceEEEEEEEHHHHHHHHHHHHh
Confidence 6788888888876 333488889888899998876544555666666678888652 3357789999999999999875
Q ss_pred CCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEec-CCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCCCeE
Q 022104 98 PGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTR-IPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSSI 176 (302)
Q Consensus 98 ~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~-e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~sd~v 176 (302)
-+ +.++|...++.+.+.-+ |..... +...- +.+.. .+++ .. ..++....+-|+++++.+. .++.|
T Consensus 150 ~s--~~V~i~~~~~~l~~s~~--gd~g~~---~~~l~~~~~~~-~~~~-~e----~~~~~F~~~YL~~~~ka~~-~s~~V 215 (245)
T 3fds_D 150 LG--EVLNIHSKENKLYFEVI--GDLSTA---KVELSTDNGTL-LEAS-GA----DVSSSYGMEYVANTTKMRR-ASDSM 215 (245)
T ss_dssp TC--SEEEEEEETTEEEEEEE--CSSCEE---EEEECTTSSSC-SEEE-EC----CCEEEEEHHHHHHGGGGGG-TCSEE
T ss_pred cC--CEEEEEEeCCEEEEEEE--ecCcEE---EEEEcCCCCce-EEEe-cc----eEEEEEEHHHHHHHhhhcc-cCCEE
Confidence 44 58888887765555443 322222 33321 11111 2333 21 2688999999999998874 57899
Q ss_pred EEEEecCCC
Q 022104 177 QIKLQPVPP 185 (302)
Q Consensus 177 ~i~~~p~~~ 185 (302)
+|.++++.|
T Consensus 216 ~i~~~~~~P 224 (245)
T 3fds_D 216 ELYFGSQIP 224 (245)
T ss_dssp EEEECTTSC
T ss_pred EEEecCCcc
Confidence 999986544
No 36
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=95.67 E-value=0.08 Score=47.33 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=75.4
Q ss_pred CeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEEcCcEEEEEEEec-------ccCceeEEeCCCCcceEE
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVEETGCLQAKVYLQ-------RELFVRYEYSAQGRPRFG 82 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~-------~~~F~~Y~~~~~~~~~fg 82 (302)
+...+.+. .+.|.++++-+. +.+. +.+.+++++++|.++ +-.-.+...++ ++.+.+|++.+ +++.+
T Consensus 153 ~~~~i~~~-~~~l~~av~r~~~~sd~--V~i~~~~~~l~lsa~-gd~g~~~~~l~~~~~~~~~~~~~~~~~ge--~~~i~ 226 (276)
T 2zvv_A 153 YHSIVRMP-SNEFSRICKDLSSIGDT--VVISVTKEGVKFSTA-GDIGTANIVLRQNTTVDKPEDAIVIEMKE--PVSLS 226 (276)
T ss_dssp CSEEEEEE-HHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEE-ETTEEEEEEECCCSSCCSGGGCCEEEESS--CEEEE
T ss_pred ccEEEEEE-HHHHHHHHHHHHhhCCE--EEEEEeCCEEEEEEE-eeccEEEEEEccCCCCCCccccEEEecCC--cEEEE
Confidence 44455554 488999999998 6666 999999999999976 34445666676 46677899873 69999
Q ss_pred EEchhHHHHHHhCCCCCCceEEEEEEcCC-CeEEEEEE
Q 022104 83 VSLGLFADCLNTFSAPGHSSLIEIRYPGP-DMQLLVKS 119 (302)
Q Consensus 83 InL~~L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~ 119 (302)
+|+.-|.++||..+.+ +.++|+..+. |+.|....
T Consensus 227 fn~~YL~d~lka~~ls---~~V~i~l~~~~Pl~l~~~~ 261 (276)
T 2zvv_A 227 FALRYMNSFTKATPLS---DTVTISLSSELPVVVEYKV 261 (276)
T ss_dssp EEHHHHHHHGGGGGGC---SEEEEEECTTSCEEEEEEE
T ss_pred EEHHHHHHHhccccCC---CEEEEEEcCCceEEEEEEe
Confidence 9999999999998731 4677777544 88887764
No 37
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=95.66 E-value=0.19 Score=44.41 Aligned_cols=103 Identities=10% Similarity=0.094 Sum_probs=77.8
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEE-cCcEEEEEEEecccCceeEEeC-CCCcceEEEEch
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVE-ETGCLQAKVYLQRELFVRYEYS-AQGRPRFGVSLG 86 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd-~s~~~~~~~~l~~~~F~~Y~~~-~~~~~~fgInL~ 86 (302)
.+..++++. .+.|.++++-+. +.+. +.+.+++++++|... +...+...+.-.++...+|+|. + +++...|+.
T Consensus 129 e~~~~v~~~-s~~f~~~i~~~~~~sd~--V~i~~~~~~v~~ss~gd~G~~~~~l~~~~~~~~~~~~~~e--~~~~~F~~~ 203 (259)
T 3lx2_A 129 PWTVKAVVL-AGALKRAVKAAKLVSDS--IYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMT--KAKSAYGVA 203 (259)
T ss_dssp CCCEEEEEE-HHHHHHHHHHHHHHCSE--EEEEECSSCEEEEEECSSCEEEEEECTTSTTEEEEEESSS--CEEEEEEHH
T ss_pred ceeEEEEEE-HHHHHHHHHHHHhcCCE--EEEEEECCEEEEEEEecCcEEEEEEcCCCCceEEEEecCc--eEEEEEEHH
Confidence 344455554 489999999998 7776 999999999999976 4344444444456677889986 5 589999999
Q ss_pred hHHHHHHhCCCCCCceEEEEEEcCC-CeEEEEEEC
Q 022104 87 LFADCLNTFSAPGHSSLIEIRYPGP-DMQLLVKSV 120 (302)
Q Consensus 87 ~L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~~ 120 (302)
-|.+.+|..+.+ +.++|+..++ |+.+.+.-.
T Consensus 204 YL~~~~Ka~~~s---~~V~l~~~~~~Pl~l~~~i~ 235 (259)
T 3lx2_A 204 YLEDILRSLADA---DEVIIRFGFDIPLLLKYMVR 235 (259)
T ss_dssp HHHHHHSSSCTT---SEEEEEECTTSCEEEEEEET
T ss_pred HHHhhhccccCC---CeEEEEeCCCCCEEEEEEeC
Confidence 999999998542 5788888765 888877643
No 38
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=95.57 E-value=0.9 Score=39.71 Aligned_cols=173 Identities=14% Similarity=0.133 Sum_probs=108.5
Q ss_pred CChHHHHHHhcccccceeeeEEEEEeC--CccEEEEEc---CcEEEEEEEecccCceeEEeCC-CCcceEEEEchhHHHH
Q 022104 18 DNVQGLVDALSAVRWKRHQDAVIELSE--HGIILIVEE---TGCLQAKVYLQRELFVRYEYSA-QGRPRFGVSLGLFADC 91 (302)
Q Consensus 18 ~~a~~l~~iL~aI~~~d~~~a~~~is~--~Gi~l~vd~---s~~~~~~~~l~~~~F~~Y~~~~-~~~~~fgInL~~L~~~ 91 (302)
-+.+.|.++|++.. +...+.+.+++ +-+.|+.+. +++....+-|-..-|.+|.... +.+..+.++-..|.++
T Consensus 70 i~l~~l~kil~~~~--~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~~~~~~ip~~~~~~~i~~~~~~l~~a 147 (258)
T 1plq_A 70 MDLTSLSKILRCGN--NTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKI 147 (258)
T ss_dssp EEHHHHHHHTTCST--TTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCCCCCCCCCCSCCSEEEEEEHHHHHHH
T ss_pred EEHHHHHHHHhcCC--CCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCCcccCCCCCCCccEEEEEeHHHHHHH
Confidence 45677888888775 33348898888 557777775 3345666666667778887653 3357789999999999
Q ss_pred HHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEe-cCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhc
Q 022104 92 LNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRT-RIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLE 170 (302)
Q Consensus 92 L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t-~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~ 170 (302)
++.++.-+ +.++|+..+..+.|.-+ +..... .-++.. .+++.+.....+.. ....++.....-|.++++-++
T Consensus 148 v~r~~~~s--~~v~i~~~~~~l~ls~~--~d~g~~-~~~l~~~~~~~~~~~~~~~~~--ge~~~i~f~~~yL~~~lka~~ 220 (258)
T 1plq_A 148 VRDLSQLS--DSINIMITKETIKFVAD--GDIGSG-SVIIKPFVDMEHPETSIKLEM--DQPVDLTFGAKYLLDIIKGSS 220 (258)
T ss_dssp HHHHHTTC--SEEEEEEETTEEEEEEE--CSSCEE-EEEECCBCCTTCGGGCBEEEE--SSCEEEEEEHHHHHHHGGGGG
T ss_pred HHHHHhcC--CEEEEEEECCEEEEEEE--ccCceE-EEEEecCCCCCCCccceEEec--CCcEEEEEEHHHHHHHhcccc
Confidence 99886533 46888887665555443 322222 223331 12222111122321 113688999999999999986
Q ss_pred CCCCeEEEEEecCCCcEEEEEee-ceEEEEEE
Q 022104 171 WPGSSIQIKLQPVPPSVSFKGEG-HGDLQIDF 201 (302)
Q Consensus 171 ~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i~~ 201 (302)
. ++.|+|.+.++.| +.|.-.. .|....=+
T Consensus 221 ~-s~~V~i~~~~~~P-l~l~~~~~~~~~~y~l 250 (258)
T 1plq_A 221 L-SDRVGIRLSSEAP-ALFQFDLKSGFLQFFL 250 (258)
T ss_dssp T-CSEEEEEECSSSC-EEEEEEETTEEEEEEE
T ss_pred C-CceEEEEECCCCC-EEEEEEECCeEEEEEE
Confidence 4 8999999986544 5555433 44444333
No 39
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=95.41 E-value=0.39 Score=42.63 Aligned_cols=96 Identities=11% Similarity=0.150 Sum_probs=77.3
Q ss_pred EEEEE-ehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEe-e--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhH
Q 022104 153 LTFTV-KSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGE-G--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFL 228 (302)
Q Consensus 153 ~~v~m-~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~-G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL 228 (302)
.++++ .+..|+.+++.+...-+.+.+.++ ++++++.+. + +.-..+.++ ++.+..+.|++++.-.-.++.|
T Consensus 7 f~a~~~~a~~lk~ii~ai~~i~~~v~~~~~--~~gl~~~A~D~~rvalv~~~l~----~~~F~~y~~d~~~~igi~l~~L 80 (265)
T 3p91_A 7 FHAKFKEAALFKRVVESLKSTIDKTNFDCS--DAGIAVQCMDNSHVSLVSLLIE----TDAFDEFQCLKPITLGINLTHL 80 (265)
T ss_dssp EEEEESCHHHHHHHHHHHHTTCSEEEEEEE--TTEEEEEEECTTSSSEEEEEEC----GGGEEEEECSSCEEEEEEHHHH
T ss_pred EEEEECchHHHHHHHHHHHHHhceEEEEEe--CCeEEEEEECCCcEEEEEEEEC----hhhceEEEeCCCeEEEEEHHHH
Confidence 46677 689999999999999999999998 679999985 3 677778887 4678999999999999999999
Q ss_pred HHhhccCCCCcccCCcceEEEE--cCC-ceEEEEEE
Q 022104 229 RATTSNLPGCVIKHNRGSKLII--GRG-GMLKVQHL 261 (302)
Q Consensus 229 ~~~~KAl~lS~~~~~~~~~V~i--~~~-g~L~~q~~ 261 (302)
..++|... ..+.|.| +++ ..|.++|.
T Consensus 81 ~kiLk~~~-------~~d~v~i~~~~~~~~l~~~~e 109 (265)
T 3p91_A 81 SKILKALD-------NDCGLILDVKKVDDAVLSITS 109 (265)
T ss_dssp HHHHTTSC-------TTSEEEEEECSSSSEEEEEEE
T ss_pred HHHHhhcC-------CCCEEEEEEcCCCCeEEEEEE
Confidence 99999875 3467777 433 36766653
No 40
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=95.04 E-value=0.56 Score=40.69 Aligned_cols=156 Identities=12% Similarity=0.044 Sum_probs=100.2
Q ss_pred ChHHHHHHhcccccceeeeEEEEEeC--CccEEEEEcCcEEEEEEEecccCceeEEeCC-CCcceEEEEchhHHHHHHhC
Q 022104 19 NVQGLVDALSAVRWKRHQDAVIELSE--HGIILIVEETGCLQAKVYLQRELFVRYEYSA-QGRPRFGVSLGLFADCLNTF 95 (302)
Q Consensus 19 ~a~~l~~iL~aI~~~d~~~a~~~is~--~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~-~~~~~fgInL~~L~~~L~~f 95 (302)
+...|.++|++.. +.+.+.+.+++ +-+.|+. .+......+-|-..-|.+|+... +.+..+.++-..|.++++.+
T Consensus 70 ~l~~l~kiL~~~~--~~~~v~i~~~~~~~~l~~~~-~~~~~~~~~rlidg~~p~~~iP~~~~~~~i~i~~~~l~~a~~r~ 146 (244)
T 2ijx_A 70 NTQYLMKILKVAK--RKEAIEIASESPDSVIINII-GSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEV 146 (244)
T ss_dssp EHHHHHHHHTTCC--SSCEEEEEEEETTEEEEEEE-SSSEEEEEEECCCCCCCCCCCCCCCCSEEEEEEHHHHHHHHHHH
T ss_pred EHHHHHHHHhhCC--CCCEEEEEecCCCCEEEEEE-CCEEEEEEEECCccCcccCCCCCCcccEEEEEEHHHHHHHHHHH
Confidence 4677888887664 33348888888 4466666 44445566666667788898763 34578999999999999998
Q ss_pred CCCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCCCe
Q 022104 96 SAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGSS 175 (302)
Q Consensus 96 ~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~sd~ 175 (302)
+.-+ +.++|...+..+.|. ..+.... .-++.... +.. .+++- . ...++.....-|.++++-++. ++.
T Consensus 147 ~~~s--~~V~l~~~~~~l~ls--~~~d~g~--~~~l~~~~-~~~-~~~~~-g---e~~~i~Fn~~yL~d~lk~~~~-s~~ 213 (244)
T 2ijx_A 147 STVT--DNVVVEGHEDRILIK--AEGESEV--EVEFSKDT-GGL-QDLEF-S---KESKNSYSAEYLDDVLSLTKL-SDY 213 (244)
T ss_dssp TTTC--SEEEEEEETTEEEEE--ETTCTTS--EEEEETTT-TCE-EEEEE-S---SCEEEEEEHHHHHHTGGGGGG-CSE
T ss_pred HhcC--CEEEEEEECCEEEEE--EEecCce--EEEEeCCC-Ccc-EEEEc-C---CceEEEEEHHHHHHHhhhccC-CCE
Confidence 7543 458888776555444 3332211 12333211 111 12221 1 126889999999999999964 899
Q ss_pred EEEEEecCCCcEEEEE
Q 022104 176 IQIKLQPVPPSVSFKG 191 (302)
Q Consensus 176 v~i~~~p~~~~~~~s~ 191 (302)
|+|.++++ .-+.+.-
T Consensus 214 V~l~~~~~-~p~~i~~ 228 (244)
T 2ijx_A 214 VKISFGNQ-KPLQLFF 228 (244)
T ss_dssp EEEEEETT-EEEEEEE
T ss_pred EEEEEcCC-CCEEEEE
Confidence 99998853 3344543
No 41
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=94.49 E-value=0.26 Score=42.95 Aligned_cols=98 Identities=9% Similarity=0.130 Sum_probs=71.6
Q ss_pred CeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
+.-.+.+. .+.|.++++-+. +.+. +.+.++++++++.... -.-.+....+.+...+|+++ ++..+.|+.-|.
T Consensus 127 ~~~~v~~~-~~~l~~av~r~~~ls~~--V~l~~~~~~l~ls~~~-d~g~~~~~~~~e~~~~~~g~---~~~i~Fn~~yL~ 199 (245)
T 1rwz_A 127 LPAKIVMD-AGEFKKAIAAADKISDQ--VIFRSDKEGFRIEAKG-DVDSIVFHMTETELIEFNGG---EARSMFSVDYLK 199 (245)
T ss_dssp CSEEEEEE-HHHHHHHHHHHHTTCSE--EEEEEETTEEEEEEEC-SSCEEEEEECGGGSSEECCC---CEEEEEEHHHHH
T ss_pred ccEEEEEE-HHHHHHHHHHHHhcCCE--EEEEEECCEEEEEEEc-cCcEEEEecCCCccEEEEEe---eEEEEEeHHHHH
Confidence 33444444 488999999998 6666 9999999999999653 22236665666777778875 389999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC-CeEEEEE
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP-DMQLLVK 118 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~-~l~l~le 118 (302)
++||..+.+ +.++|...+. |+.+...
T Consensus 200 d~lk~~~~s---~~V~l~~~~~~p~~i~~~ 226 (245)
T 1rwz_A 200 EFCKVAGSG---DLLTIHLGTNYPVRLVFE 226 (245)
T ss_dssp HHGGGCCTT---CEEEEEECSSSCEEEEEE
T ss_pred HHhhhccCC---CeEEEEECCCCCEEEEEE
Confidence 999998731 4677777544 7777764
No 42
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=94.43 E-value=0.28 Score=42.70 Aligned_cols=99 Identities=8% Similarity=0.038 Sum_probs=70.2
Q ss_pred CeEEEEECChHHHHHHhcccc-c-ceeeeEEEEEeCCccEEEEEcCcEEEEEEEec--ccCceeEEeCCCCcceEEEEch
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-W-KRHQDAVIELSEHGIILIVEETGCLQAKVYLQ--RELFVRYEYSAQGRPRFGVSLG 86 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~-~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~--~~~F~~Y~~~~~~~~~fgInL~ 86 (302)
+...+.+. .+.|.++++-+. + .+. +.+.++++++++.... ..-.+...++ .+.+.+|+++ ++..+.|+.
T Consensus 128 ~~~~i~i~-~~~l~~a~~r~~~l~s~~--V~l~~~~~~l~ls~~~-d~g~~~~~l~~~~~~~~~~~ge---~~~i~Fn~~ 200 (246)
T 3aiz_C 128 FPFKAKAL-TVTFTDIIDEIEDIGGDS--ITFKAEGGKLYLSANS-DMGSSTIELSTENGGLLESEGG---DAESVYGLE 200 (246)
T ss_dssp CSEEEEEE-HHHHHHHHHHHHHHCCSE--EEEEEETTEEEEEEEC-SSCEEEEEECTTTTSCSEEEEC---CEEEEEEHH
T ss_pred ccEEEEEE-HHHHHHHHHHHhhCCCCE--EEEEEECCEEEEEEEc-CCceEEEEEecCCCccEEEEEe---eEEEEEEHH
Confidence 34444444 488999999998 6 666 9999999999999753 2234444544 4556678883 599999999
Q ss_pred hHHHHHHhCCCCCCceEEEEEEcCC-CeEEEEEE
Q 022104 87 LFADCLNTFSAPGHSSLIEIRYPGP-DMQLLVKS 119 (302)
Q Consensus 87 ~L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~ 119 (302)
-|.++||..+.+ +.++|...+. |+.+....
T Consensus 201 yL~d~lk~~~~s---~~V~l~~~~~~p~~i~~~~ 231 (246)
T 3aiz_C 201 YVVNTSKMRKPS---DTVEIAFGSQIPLKLRYNL 231 (246)
T ss_dssp HHHTTGGGTTTC---SEEEEEEETTEEEEEEEEE
T ss_pred HHHHHhhhccCC---CeEEEEecCCCcEEEEEEe
Confidence 999999998731 4566666544 66666543
No 43
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=94.27 E-value=0.33 Score=42.57 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=75.6
Q ss_pred CeEEEEECChHHHHHHhcccc-cceeeeEEEEEe--CCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchh
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELS--EHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGL 87 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is--~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~ 87 (302)
+.-.+++ +.+.|.++++-+. +.+. +.+.++ ++++++..+. ..-.++..++++-..+|+ . + +++...|+.-
T Consensus 127 ~~~~v~~-~s~~f~~~i~~~~~~sd~--V~i~~~~~~~~~~~s~~g-d~g~~~~~l~~~~~~~~~-~-e-~~~~~F~~~Y 199 (247)
T 3ifv_A 127 LAANIVL-EGTHLDRGIKAADMVSDH--IRLRVDGAEETFHIEAEG-DTDDVDLSLPPADLISIE-A-G-AADSLFSLDY 199 (247)
T ss_dssp CSEEEEE-EHHHHHHHHHHHHHHCSE--EEEEEETTTTEEEEEEEC-SSCEEEEEECGGGCSEEE-E-C-CCEEEEEHHH
T ss_pred ceEEEEE-EHHHHHHHHHHHHhhCCE--EEEEEECCCCEEEEEEEe-cceEEEEEECCCceEEEe-c-C-eEEEEEeHHH
Confidence 3344444 4588999999888 7776 999999 7788888763 334567788877666777 3 3 6999999999
Q ss_pred HHHHHHhCCCCCCceEEEEEEcCC-CeEEEEEEC
Q 022104 88 FADCLNTFSAPGHSSLIEIRYPGP-DMQLLVKSV 120 (302)
Q Consensus 88 L~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le~~ 120 (302)
|.+.+|..+.+ +.++|+..++ |+.+.+.-.
T Consensus 200 L~~~~Ka~~~s---~~V~i~~~~~~Pl~l~~~i~ 230 (247)
T 3ifv_A 200 LKDMNKAIPTD---AEVTVELGEEFPVKLHYQIA 230 (247)
T ss_dssp HHHHHHHSCTT---CEEEEEECBSSCEEEEEEEG
T ss_pred HHHhhhhccCC---CEEEEEecCCccEEEEEEEc
Confidence 99999998742 5788888765 888877753
No 44
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=94.23 E-value=0.21 Score=43.45 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=70.7
Q ss_pred eEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEE-cCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHH
Q 022104 12 DLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVE-ETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFA 89 (302)
Q Consensus 12 ~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd-~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~ 89 (302)
.-.+.+. .+.|.++++-+. +.+. +.+.++++++++... +... ...+.-..+.+.+|++.+ ++..+.|+.-|.
T Consensus 129 ~~~i~i~-~~~l~~a~~r~~~~s~~--V~l~~~~~~l~ls~~~d~g~-~~~l~~~~~~~~~~~~ge--~~~i~Fn~~yL~ 202 (245)
T 1ud9_A 129 DIKATIN-ASGLKNAIGEIAEVADT--LLISGNEEKVVVKGEGENKV-EVEFSKDTGSLADIEFNK--ESSSAYDVEYLN 202 (245)
T ss_dssp SEEEEEE-HHHHHHHHHHHHHHCSE--EEEEECSSEEEEEESSSSCC-CEEEEGGGTCEEEEEESS--CEEEEEEHHHHH
T ss_pred cEEEEEe-HHHHHHHHHHHHhcCCE--EEEEEECCEEEEEEEccCce-EEEEecCCCccEEEEeCC--ceeEEEEHHHHH
Confidence 3344444 588999999998 6666 999999999999865 3223 444444456677899873 699999999999
Q ss_pred HHHHhCCCCCCceEEEEEEcCC-CeEEEEE
Q 022104 90 DCLNTFSAPGHSSLIEIRYPGP-DMQLLVK 118 (302)
Q Consensus 90 ~~L~~f~~~~~~~~l~l~y~g~-~l~l~le 118 (302)
++||..+.+ +.++|...+. |+.+...
T Consensus 203 d~lk~~~~s---~~V~l~~~~~~p~~i~~~ 229 (245)
T 1ud9_A 203 DIISLTKLS---DYVKVAFADQKPMQLEFN 229 (245)
T ss_dssp HTGGGGGGC---SEEEEEECTTSCEEEEEE
T ss_pred HHhhhcccC---CEEEEEEcCCCCEEEEEE
Confidence 999998721 4577777544 7777664
No 45
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=94.02 E-value=0.52 Score=41.02 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=68.1
Q ss_pred CeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCccEEEEEcCcEEEEEEEecc-cCceeEEeCCCCcceEEEEchhH
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHGIILIVEETGCLQAKVYLQR-ELFVRYEYSAQGRPRFGVSLGLF 88 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~-~~F~~Y~~~~~~~~~fgInL~~L 88 (302)
+...+.+. .+.|.++++-+. +.+. +.+.++++++++.+.. -.-.+...++. +-+.+|.+. + +++.+.|+.-|
T Consensus 132 ~~~~v~~~-~~~l~~av~r~~~~s~~--V~i~~~~~~l~ls~~~-d~g~~~~~~~~~~~~~~~~~g-e-~~~i~fn~~yL 205 (248)
T 3aiz_A 132 LSVTFTTD-GDVLKDIARDLSLVGEE--VEISADENTVTLSTEE-AGRTYKSLLKQDKPLKSLNVE-S-PSKAVYSIEVL 205 (248)
T ss_dssp CSEEEEEC-HHHHHHHHHHHTTSCSE--EEEEECSSEEEEEEEE-TTEEEEEEEEETBEESEEEES-S-CEEEEEEHHHH
T ss_pred ccEEEEEe-HHHHHHHHHHHHhcCCE--EEEEEeCCEEEEEEEc-cCceEEEEEcCCCcceEEecC-C-ceEEEEEHHHH
Confidence 44445544 488999999998 6666 9999999999999652 33344444432 123468886 3 69999999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCC-CeEEEEE
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGP-DMQLLVK 118 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~-~l~l~le 118 (302)
.++|+..+.+ +.++|...+. |+.+...
T Consensus 206 ~d~lk~~~~s---~~V~l~~~~~~p~~i~~~ 233 (248)
T 3aiz_A 206 KDVFKVTSIS---QNVTVGFGNNIPMKIEVP 233 (248)
T ss_dssp HHHHHHGGGC---SSEEEEEETTEEEEEEEE
T ss_pred HHHhhhccCC---CeEEEEEcCCCCEEEEEE
Confidence 9999998721 3455555543 6666554
No 46
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=90.64 E-value=11 Score=35.39 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=108.0
Q ss_pred eEEEEEeCCccEEEEEcCc-EEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEE
Q 022104 37 DAVIELSEHGIILIVEETG-CLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQL 115 (302)
Q Consensus 37 ~a~~~is~~Gi~l~vd~s~-~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l 115 (302)
.+.+++.+++|+|+.-|.. .+.. .++.+ +.+ +.++.|+-..|.++++.+.. ..++|..++.. +
T Consensus 50 ~ili~a~~~~L~ltatDlei~i~~--~i~a~------v~e--~G~i~v~ak~l~dIvr~Lp~----~~I~l~~~~~~--l 113 (408)
T 3p16_A 50 GVLLTGSDNGLTISGFDYEVSAEA--QVGAE------IVS--PGSVLVSGRLLSDITRALPN----KPVDVHVEGNR--V 113 (408)
T ss_dssp EEEEEECSSEEEEEECCSSCCEEE--EEECC------CSB--CEEEEEEHHHHHHHHHHSCS----SEEEEEEETTE--E
T ss_pred cEEEEEECCEEEEEEECCceEEEE--EEEEE------ecC--CeEEEEEHHHHHHHHHhCCC----CcEEEEEeCCE--E
Confidence 4889999999999965543 3333 34432 332 47899999999999999863 34788876654 4
Q ss_pred EEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCC-C-C-e------EEEEEecCCCc
Q 022104 116 LVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWP-G-S-S------IQIKLQPVPPS 186 (302)
Q Consensus 116 ~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~-s-d-~------v~i~~~p~~~~ 186 (302)
.+..+. ..|.|.++++++. +.++.. +. ..+.+++..|+++++..... + + . |.+.+. ++.
T Consensus 114 ~I~~g~-----s~f~L~~l~~~df-P~lp~~---~~-~~~~i~~~~L~~~I~~t~fA~s~de~rp~L~Gv~~~~~--~~~ 181 (408)
T 3p16_A 114 ALTCGN-----ARFSLPTMPVEDY-PTLPTL---PE-ETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEIL--GET 181 (408)
T ss_dssp EEEBTT-----EEEEEEEECTTTS-CCCCCC---CC-EEEEECHHHHHHHHHHHTTSSCCSSSCCCSCEEEEEEE--TTE
T ss_pred EEEECC-----EEEEEecCCHHHC-CCCCCC---CC-cEEEEcHHHHHHHHhhheecccCccchhhceEEEEEEE--CCE
Confidence 444222 3459999998763 343322 12 37899999999999987532 2 2 1 556555 456
Q ss_pred EEEEEe-e--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCCCCcccCCcceEEEE
Q 022104 187 VSFKGE-G--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLPGCVIKHNRGSKLII 250 (302)
Q Consensus 187 ~~~s~~-G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~lS~~~~~~~~~V~i 250 (302)
+++.+. | +.-.++.++ .... ..+...-.+-+.|..+.|.+.- ...|.|
T Consensus 182 l~~VATDghRLA~~~~~~~--~~~~-------~~~~~~iIP~k~l~el~kll~~-------~~~V~i 232 (408)
T 3p16_A 182 VVLAATDRFRLAVRELKWS--ASSP-------DIEAAVLVPAKTLAEAAKAGIG-------GSDVRL 232 (408)
T ss_dssp EEEEEECSSEEEEEEEECB--CSSS-------SCEEEEEEEHHHHHHHHHTCCS-------SSCEEE
T ss_pred EEEEEcCcceEEEEecccc--ccCC-------CCceeEEEEHHHHHHHHHhcCC-------CCcEEE
Confidence 776644 3 444444443 1111 0123567788999999998742 356666
No 47
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=88.58 E-value=7.5 Score=34.58 Aligned_cols=101 Identities=11% Similarity=0.091 Sum_probs=70.2
Q ss_pred CCeEEEEECChHHHHHHhcccc-cceeeeEEEEEeCCc-cEEEEEcCcEEEEEEEecccCcee-E------EeCCCCcce
Q 022104 10 SPDLVCQLDNVQGLVDALSAVR-WKRHQDAVIELSEHG-IILIVEETGCLQAKVYLQRELFVR-Y------EYSAQGRPR 80 (302)
Q Consensus 10 ~~~f~a~~~~a~~l~~iL~aI~-~~d~~~a~~~is~~G-i~l~vd~s~~~~~~~~l~~~~F~~-Y------~~~~~~~~~ 80 (302)
.|....+++..+.|+++++-++ +.+. +++.++.+| |+|.++.. ..-+++.++.-.=-. . ..+.+++++
T Consensus 154 ~~dv~i~lPsl~~~~~iv~~lk~i~d~--v~i~a~~~G~l~f~~~~d-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~s 230 (281)
T 3a1j_B 154 DPDVSIYLPVLKTMKSVVEKMKNISNH--LVIEANLDGELNLKIETE-LVCVTTHFKDLGNPPLASESTHEDRNVEHMAE 230 (281)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHTTCSE--EEEEECTTSCEEEEEECS-SEEEEEEECCCCCCCC----------CCCCEE
T ss_pred CCCeEEECCCHHHHHHHHHHHhccCCe--EEEEEECCCeEEEEEEee-eEEEEEEEcCCCCCCCCccccccccCCCccEE
Confidence 5778889999999999999998 7777 999999999 99998743 445555555411100 0 111123689
Q ss_pred EEEEchhHHHHHHhCCCCCCceEEEEE--EcCCCeEEE
Q 022104 81 FGVSLGLFADCLNTFSAPGHSSLIEIR--YPGPDMQLL 116 (302)
Q Consensus 81 fgInL~~L~~~L~~f~~~~~~~~l~l~--y~g~~l~l~ 116 (302)
..+++..|...+|...-.+ .+.+. .++.++.+.
T Consensus 231 v~~~~k~l~~f~k~~~ls~---~v~~~~i~~~~~l~~y 265 (281)
T 3a1j_B 231 VHIDIRKLLQFLAGQQVNP---TKALCNIVNNKMVHFD 265 (281)
T ss_dssp EEEEHHHHHHHHHHCCSCC---SEEEEEEETTTEEEEE
T ss_pred EEEEHHHHHHhhCcccCCC---cEEEEEEeCCceEEEE
Confidence 9999999999999876422 33344 356676663
No 48
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=82.68 E-value=30 Score=31.91 Aligned_cols=164 Identities=11% Similarity=0.126 Sum_probs=104.7
Q ss_pred eEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHhCCCCCCceEEEEEEcCCCeEEE
Q 022104 37 DAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLL 116 (302)
Q Consensus 37 ~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~ 116 (302)
.+.+++.+++|+++.-|.. +.+...++.+ +.+ +.++.|+-..|.++++-+.. ..++|..++. ..+.
T Consensus 33 ~ili~a~~~~L~ltatD~e-i~i~~~i~a~------v~~--~G~~~v~ak~l~divr~Lp~----~~i~l~~~~~-~~l~ 98 (371)
T 3t0p_A 33 CILIDASANEIKLMANDME-LGIETIIDGT------IEE--RGIIALDAKIFSEIVRKLPD----NDVTIETDAS-FKTV 98 (371)
T ss_dssp EEEEEESSSSEEEEEECSS-EEEEEEECCE------EEE--CEEEEEEHHHHHHHHHHSCS----SEEEEEECTT-CEEE
T ss_pred CEEEEEECCEEEEEEeCcE-EEEEEEEEEE------Ecc--CeEEEEEHHHHHHHHHhCCC----CcEEEEECCC-CeEE
Confidence 4888999999999966644 3344455542 332 47899999999999999863 3588888764 2444
Q ss_pred EEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcC-CC-Ce-------EEEEEecCCCcE
Q 022104 117 VKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEW-PG-SS-------IQIKLQPVPPSV 187 (302)
Q Consensus 117 le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~-~s-d~-------v~i~~~p~~~~~ 187 (302)
+..+. ..+.|.++++++. +.++.. +....+.+++..|+++++.... .+ +. |.+.+. ++.+
T Consensus 99 I~~g~-----s~f~l~~~~~~df-P~lp~~---~~~~~~~i~~~~L~~~I~~t~fA~s~de~r~~L~Gv~~~~~--~~~l 167 (371)
T 3t0p_A 99 ISCEK-----AKFNIIGKSGDDF-SYIPYV---ERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIE--ENKL 167 (371)
T ss_dssp EEETT-----EEEEEECBCGGGS-CCCCCC---CCCSEEEEEHHHHHHHHHTTGGGSCSSSSSTGGGEEEEEEE--EEEE
T ss_pred EEECC-----EEEEEccCCHHHC-CCCCCC---CCCeEEEECHHHHHHHHhheeEEeeCCCCchhceEEEEEEE--CCEE
Confidence 44332 3459999988753 233321 2235789999999999998743 22 21 555555 3456
Q ss_pred EEEEe-e--ceEEEEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccCC
Q 022104 188 SFKGE-G--HGDLQIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNLP 236 (302)
Q Consensus 188 ~~s~~-G--~G~~~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl~ 236 (302)
++.|. | +.-.++.++ .. . ++...--+-+.|..+.|.++
T Consensus 168 ~~vATDg~RLa~~~~~~~--~~---~------~~~~~iIP~k~l~el~kll~ 208 (371)
T 3t0p_A 168 RVVSLDGHRISIRYIEMK--NH---Y------DSKKVVVPGKTLQEISKIIP 208 (371)
T ss_dssp EEEEECSSEEEEEEEEEE--EE---E------EEEEEEEEHHHHHHHHHHCC
T ss_pred EEEEecceEEEEEEeccC--CC---C------CceEEEEEHHHHHHHHHhcC
Confidence 66543 3 444444443 10 0 12345677888998888875
No 49
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=81.45 E-value=32 Score=31.52 Aligned_cols=151 Identities=9% Similarity=0.168 Sum_probs=91.7
Q ss_pred hHHHHHHhcccccce-eeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEe--CCCCcceEEEEchhHHHHHHhCC
Q 022104 20 VQGLVDALSAVRWKR-HQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEY--SAQGRPRFGVSLGLFADCLNTFS 96 (302)
Q Consensus 20 a~~l~~iL~aI~~~d-~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~--~~~~~~~fgInL~~L~~~L~~f~ 96 (302)
.+.+..+.+-+. + .+.+.+.++++-+.|+.++ .....-|=..-|=.|+= ..+.+..+.++-..|.++|+...
T Consensus 197 ~k~l~el~kll~--~~~~~v~i~~~~~~i~f~~~~---~~~~srLidg~fPdy~~viP~~~~~~~~v~~~~l~~al~Rvs 271 (366)
T 3d1g_A 197 RKGVIELMRMLD--GGDNPLRVQIGSNNIRAHVGD---FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAA 271 (366)
T ss_dssp HHHHHHHHHTCC--SSSCCEEEEECSSEEEEEETT---EEEEEECCSSCCCCHHHHSCSCCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc--cCCccEEEEEcCCEEEEEECC---EEEEEEEecccCCChhhcCCCCCCeEEEEEHHHHHHHHHHHH
Confidence 445555555444 2 3348888888877777654 22333344567777762 32335789999999999999763
Q ss_pred --CCCCceEEEEEEcCCCeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHHhcCCCC
Q 022104 97 --APGHSSLIEIRYPGPDMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPGS 174 (302)
Q Consensus 97 --~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~sd 174 (302)
+.+....++|...+..+.+.-.+.... .. .-++ +..+..+ ..++-..+.-|.++++-++ ++
T Consensus 272 ils~~~~~~v~l~~~~~~l~i~a~~~e~g-~a-~e~l----------~~~~~Ge---~~~I~fN~~YL~d~L~~~~--~~ 334 (366)
T 3d1g_A 272 ILSNEKFRGVRLYVSENQLKITANNPEQE-EA-EEIL----------DVTYSGA---EMEIGFNVSYVLDVLNALK--CE 334 (366)
T ss_dssp HTSCTTTCEEEEEEETTEEEEEEECTTCC-EE-EEEE----------ECBCCSC---CEEEEEEHHHHHHHHHHCC--SS
T ss_pred HHhcCCCceEEEEEeCCEEEEEEcCCCCc-eE-EEEE----------EEEecCC---cEEEEEcHHHHHHHHhcCC--CC
Confidence 112235678887766666655433322 21 1122 1122211 2588999999999999997 78
Q ss_pred eEEEEEecCCCcEEEEEe
Q 022104 175 SIQIKLQPVPPSVSFKGE 192 (302)
Q Consensus 175 ~v~i~~~p~~~~~~~s~~ 192 (302)
.|.|.+.....-+.+...
T Consensus 335 ~v~l~~~~~~~p~~i~~~ 352 (366)
T 3d1g_A 335 NVRMMLTDSVSSVQIEDA 352 (366)
T ss_dssp EEEEEECCTTSCEEEEET
T ss_pred EEEEEECCCCCCEEEEcC
Confidence 999988733234445543
No 50
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=71.97 E-value=61 Score=29.78 Aligned_cols=191 Identities=12% Similarity=0.098 Sum_probs=110.5
Q ss_pred ECChHHHHHHhcccccceeeeEEEEEeCCccEEEEEcCcEEEEEEEecccCceeEEeCCCCcceEEEEchhHHHHHHh--
Q 022104 17 LDNVQGLVDALSAVRWKRHQDAVIELSEHGIILIVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGVSLGLFADCLNT-- 94 (302)
Q Consensus 17 ~~~a~~l~~iL~aI~~~d~~~a~~~is~~Gi~l~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgInL~~L~~~L~~-- 94 (302)
+-.+|.|..|++.+- + +.+++...+++ ++++..++.-.--..++.+-|=...-.+. ...|.|+-..|.+.++-
T Consensus 76 ~v~ak~l~divr~Lp--~-~~v~~~~~~~~-~l~I~~g~s~f~l~~~~~~~fP~l~~~~~-~~~~~i~~~~l~~~i~~t~ 150 (378)
T 2avt_A 76 LLEASFFINIISSLP--D-ISINVKEIEQH-QVVLTSGKSEITLKGKDVDQYPRLQEVST-ENPLILKTKLLKSIIAETA 150 (378)
T ss_dssp EEEHHHHHHHHHHCS--S-SEEEEEEETTT-EEEEEETTEEEEEECBCGGGSCCCCCCCC-SSCEEEEHHHHHHHHHHHG
T ss_pred EEEhHHHHHHHHhCC--C-CcEEEEECCCC-EEEEEECCEEEEEccCCHHHCCCCCCCCC-CeEEEECHHHHHHHHhheE
Confidence 357899999999986 5 24778777665 34444333222223567777776643322 35799999999999883
Q ss_pred C--CCCC---CceEEEEEEcCC-CeEEEEEECCCCCeEEEEEEEecCCCCccCccccCCCCCccEEEEEehHHHHHHHHH
Q 022104 95 F--SAPG---HSSLIEIRYPGP-DMQLLVKSVDSPDACIYAEVRTRIPDMISWDYNFEPAGSTPLTFTVKSAALKEAIDD 168 (302)
Q Consensus 95 f--~~~~---~~~~l~l~y~g~-~l~l~le~~~~~~~~~~~~i~t~e~d~~~ld~~f~~~~~~~~~v~m~s~~l~~a~~d 168 (302)
| +..+ .-+.+.+...+. .+.+.=. +.- +-..+.+.. +. + .. ...+++|...+.++.+-
T Consensus 151 fA~s~de~r~~L~Gv~~~~~~~~~l~~vAT--Dg~-RLa~~~~~~---~~---~--~~-----~~~~iiP~k~l~el~kl 214 (378)
T 2avt_A 151 FAASLQESRPILTGVHIVLSNHKDFKAVAT--DSH-RMSQRLITL---DN---T--SA-----DFMVVLPSKSLREFSAV 214 (378)
T ss_dssp GGSCCCTTSGGGGEEEEEEETTTEEEEEEE--CSS-EEEEEEEEC---SS---C--CC-----CEEEEEEHHHHHHHHHH
T ss_pred EEEECCCCcceeEEEEEEECCCCeEEEEEe--cCe-eEEEEEecc---CC---C--CC-----ccEEEEEhHHHHHHHHh
Confidence 2 2211 012466776666 5555533 222 222233321 11 0 00 13689999999999999
Q ss_pred hcCCCCeEEEEEecCCCcEEEEEee-ceEE---EEEEeccCCCCcEEEEEeCcceEEEEehhhHHHhhccC
Q 022104 169 LEWPGSSIQIKLQPVPPSVSFKGEG-HGDL---QIDFMYYVNTDLLIAFHCDREVSYRYKYKFLRATTSNL 235 (302)
Q Consensus 169 L~~~sd~v~i~~~p~~~~~~~s~~G-~G~~---~i~~~~~~~s~~l~~f~~~e~v~~~Y~l~yL~~~~KAl 235 (302)
|+...+.|+|.++ ++.+.|...+ .=.+ +-+|| +-..++ .-+.+.+....-+-|..+.|-+
T Consensus 215 l~~~~~~v~i~~~--~~~i~f~~~~~~~~srLidg~fP--dy~~vi---P~~~~~~~~v~~~~l~~al~Rv 278 (378)
T 2avt_A 215 FTDDIETVEVFFS--PSQILFRSEHISFYTRLLEGNYP--DTDRLL---MTEFETEVVFNTQSLRHAMERA 278 (378)
T ss_dssp SCTTCCEEEEEEC--SSEEEEECSSEEEEEECCCSCCC--CCGGGS---CCCCSEEEEEEHHHHHHHHHHH
T ss_pred cccCCceEEEEEc--CCEEEEEECCEEEEEEEecccCC--ChhhcC---CCCCCEEEEEEHHHHHHHHHHH
Confidence 8755677999886 6688887655 2111 22455 222221 1122455566666677666543
No 51
>1dml_A DNA polymerase processivity factor; herpes simplex virus, DNA synthesis, sliding clamps, PCNA, processivity, DNA binding protein/transferase complex; HET: DNA; 2.70A {Human herpesvirus 1} SCOP: d.131.1.2 d.131.1.2
Probab=64.06 E-value=83 Score=28.36 Aligned_cols=184 Identities=13% Similarity=0.172 Sum_probs=105.2
Q ss_pred CeEEEEECChHHHHHHhcccc-cce-eeeEEEEEeCCccEEEE-EcCcEEEEEEEecccCceeEEeCCC-----------
Q 022104 11 PDLVCQLDNVQGLVDALSAVR-WKR-HQDAVIELSEHGIILIV-EETGCLQAKVYLQRELFVRYEYSAQ----------- 76 (302)
Q Consensus 11 ~~f~a~~~~a~~l~~iL~aI~-~~d-~~~a~~~is~~Gi~l~v-d~s~~~~~~~~l~~~~F~~Y~~~~~----------- 76 (302)
+-..+.+. ...|..++.+++ +.. ..++-+.++++||-++. --+. |+=+=|+.+.|++|+....
T Consensus 29 ~~~~~vL~-g~~L~~~~~alaPl~~sLkds~LvFse~GllIh~sv~gE--QVyvPi~~~~FS~Y~W~GP~AvFLAlvD~R 105 (319)
T 1dml_A 29 APCQVVLQ-GAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGE--QVFLPLEHSQFSRYRWRGPTAAFLSLVDQK 105 (319)
T ss_dssp CCEEEEEE-HHHHHHHHHHHGGGTTTTSSCEEEEETTEEEEEEEETTE--EEEEEEEGGGSSEEECCSSCEEEESEEETT
T ss_pred CCeEEEEe-chhHHHHHHHHHhHHHhhcccEEEEcCCceEEEeeecce--EEEEEcChHhccccEecCCceEEeEecccc
Confidence 33444443 234555555554 333 23488999999999983 2322 6667889999999998710
Q ss_pred --------------------------------------------------------------------CcceEEEEchhH
Q 022104 77 --------------------------------------------------------------------GRPRFGVSLGLF 88 (302)
Q Consensus 77 --------------------------------------------------------------------~~~~fgInL~~L 88 (302)
..+++.++=+-|
T Consensus 106 rsLLDaFr~~k~~~~~rV~F~i~G~~P~R~LtQ~v~~~~~d~~~~~~~~~tlvK~El~~ysvmlPq~~PDvtl~LsK~QL 185 (319)
T 1dml_A 106 RSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQL 185 (319)
T ss_dssp EETTSTTSTTTCTTEEEEEEEEESCTTSCEEEEEEEETTSSTTCSSSSCCEEEEECCSSCEEEECCSCCSEEEEECHHHH
T ss_pred hhHHHHhccCCCCCcEEEEEEEecCCCcceEEEEEEEecCCCCccchhhHHHHHHhhhceEEEccCCCCCEEEEEcHHHH
Confidence 258899999999
Q ss_pred HHHHHhCCCCCCceEEEEEEcCC----------CeEEEEEECCCCCeEEEEEEEecCCCC-------ccCccccCCCCCc
Q 022104 89 ADCLNTFSAPGHSSLIEIRYPGP----------DMQLLVKSVDSPDACIYAEVRTRIPDM-------ISWDYNFEPAGST 151 (302)
Q Consensus 89 ~~~L~~f~~~~~~~~l~l~y~g~----------~l~l~le~~~~~~~~~~~~i~t~e~d~-------~~ld~~f~~~~~~ 151 (302)
.|+|..+++..+ ..+++.+.-. ..++.+.+.|.. ..+...++.++--. ...+.-+-....-
T Consensus 186 ~Kil~~~~k~~~-~~ttF~L~~~~~f~v~sg~~~vtfsa~~~g~~-~~t~~~~~il~~A~~k~~~a~~~~~tv~G~~~~r 263 (319)
T 1dml_A 186 TKVLNATGADSA-TPTTFELGVNGKFSVFTTSTCVTFAAREEGVS-SSTSTQVQILSNALTKAGQAAANAKTVYGENTHR 263 (319)
T ss_dssp HHHHHHSCCSTT-SCEEEEECTTSEEEEECSSCEEEEECCBCC-------------------------CTTBCEEESTTS
T ss_pred HHHHHHHhcCCC-CceEEEEecCCcEEEecCCeEEEEEEeccCCC-CChhhHHHHHHHhhhhhhhhcccceEEeccCCCc
Confidence 999997765221 3344444211 223333333321 11111111111000 0001111000011
Q ss_pred cEEEEEehHHHHHHHHHhcCCCCeEEEEEecCCCcEEEEEee-ceEEEE
Q 022104 152 PLTFTVKSAALKEAIDDLEWPGSSIQIKLQPVPPSVSFKGEG-HGDLQI 199 (302)
Q Consensus 152 ~~~v~m~s~~l~~a~~dL~~~sd~v~i~~~p~~~~~~~s~~G-~G~~~i 199 (302)
.-.+.+-...|+.+++-|...+.++.+..+++.|.+.+++.| .+-+-+
T Consensus 264 ~F~laLed~~fr~vlqklk~gg~~L~Fflt~~~Pml~Vt~~~p~~vsaf 312 (319)
T 1dml_A 264 TFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGPNAVSAV 312 (319)
T ss_dssp CEEEEESSCCHHHHHHHTTCCSEEEEEECSSSSCEEEEEESSSSCCEEE
T ss_pred ceEEEeccccHHHHHHHHhccCeEEEEEecCCCCeEEEEcCCCCceEEE
Confidence 235677777799999999988889999888889999999999 554433
No 52
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=53.17 E-value=1.1e+02 Score=26.34 Aligned_cols=116 Identities=12% Similarity=0.088 Sum_probs=72.7
Q ss_pred EEEcCcEEEEEEEecccCceeEEeCCCCcceEEE-EchhHHHHHHhCCCCCCceEEEEEEcCCCeEEEEEECCCCCeEEE
Q 022104 50 IVEETGCLQAKVYLQRELFVRYEYSAQGRPRFGV-SLGLFADCLNTFSAPGHSSLIEIRYPGPDMQLLVKSVDSPDACIY 128 (302)
Q Consensus 50 ~vd~s~~~~~~~~l~~~~F~~Y~~~~~~~~~fgI-nL~~L~~~L~~f~~~~~~~~l~l~y~g~~l~l~le~~~~~~~~~~ 128 (302)
+...++++.|.+.+. ++|. ..|+| +|+.++.+|++++. + .. +...++. .+.+.++ .+.+
T Consensus 31 T~s~~~~i~AeA~I~----d~fd------~e~~IYDL~~FL~iL~L~~~-~--ae--i~~~~~~-~I~I~~~--rs~~-- 90 (228)
T 1b77_A 31 TRAVNGTTYAEANIS----DEID------FDVALYDLNSFLSILSLVSD-D--AE--ISMHTDG-NIKIADT--RSTV-- 90 (228)
T ss_dssp EECTTSSEEEEEEEE----EEEC------SCEEESCHHHHHHHHTTSCT-T--CE--EEECTTS-SEEEECS--SEEE--
T ss_pred EEeCCCcEEEEEEec----ccCc------ceeeeeeHHHHHHHHhccCC-C--Ce--EEecCCc-eEEEeCC--CeEE--
Confidence 356677888888875 2222 33666 89999999999983 1 23 4454443 3333432 2344
Q ss_pred EEEEecCCCC---ccCccccCCCCCccEEEEEehHHHHHHHHHhcCCC-CeEEEEEecCCCcEEEEE
Q 022104 129 AEVRTRIPDM---ISWDYNFEPAGSTPLTFTVKSAALKEAIDDLEWPG-SSIQIKLQPVPPSVSFKG 191 (302)
Q Consensus 129 ~~i~t~e~d~---~~ld~~f~~~~~~~~~v~m~s~~l~~a~~dL~~~s-d~v~i~~~p~~~~~~~s~ 191 (302)
.+..-+|+. |.-...|.+. ...+.++++.|+++.|.....+ +.+.|.-. .+.+.+.+
T Consensus 91 -~~~~adp~~I~~P~k~i~~P~~---dv~F~L~~edl~ql~kas~~l~l~dl~~~~~--~g~i~i~~ 151 (228)
T 1b77_A 91 -YWPAADKSTIVFPNKPIQFPVA---SVITEIKAEDLQQLLRVSRGLQIDTIAITNK--DGKIVING 151 (228)
T ss_dssp -EECCBCGGGSCCCSSCCCCCCC---SEEEEECHHHHHHHHHHHHHTTCCEEEEEEE--TTEEEEEE
T ss_pred -EEEccCcccccCCccccCCCCC---CEEEEECHHHHHHHHHHHHhcCCCeEEEEec--CCEEEEEE
Confidence 333344443 2235566543 4789999999999999987765 66777544 56777775
Done!