Query 022105
Match_columns 302
No_of_seqs 49 out of 51
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:05:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022105.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022105hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jqw_A COLH protein, collagena 94.0 0.16 5.5E-06 41.7 7.4 57 27-86 13-71 (121)
2 1nqj_A Class 1 collagenase; be 84.9 3.6 0.00012 33.7 7.9 86 26-116 14-105 (119)
3 3oja_B Anopheles plasmodium-re 79.8 8.8 0.0003 36.9 9.7 64 193-256 529-592 (597)
4 3htk_A Structural maintenance 76.5 17 0.00058 25.4 8.7 51 187-237 5-55 (60)
5 3hnw_A Uncharacterized protein 65.5 21 0.00072 29.8 7.5 53 185-237 73-125 (138)
6 3na7_A HP0958; flagellar bioge 57.6 46 0.0016 29.5 8.7 39 201-242 132-170 (256)
7 1l8d_A DNA double-strand break 51.2 24 0.00081 27.3 5.1 49 177-225 52-102 (112)
8 2eqb_B RAB guanine nucleotide 48.3 1E+02 0.0036 24.6 8.5 50 186-235 11-60 (97)
9 3hnw_A Uncharacterized protein 46.5 79 0.0027 26.2 7.9 48 187-234 82-129 (138)
10 4ani_A Protein GRPE; chaperone 44.5 58 0.002 29.1 7.1 44 187-230 59-102 (213)
11 3sjb_C Golgi to ER traffic pro 44.3 39 0.0013 27.0 5.3 58 160-226 5-67 (93)
12 1wt6_A Myotonin-protein kinase 43.4 1E+02 0.0035 24.0 7.5 45 190-234 27-71 (81)
13 3a7p_A Autophagy protein 16; c 40.5 1.3E+02 0.0044 25.9 8.3 50 187-236 82-131 (152)
14 3bas_A Myosin heavy chain, str 40.5 96 0.0033 23.7 7.0 32 191-222 11-42 (89)
15 3iox_A AGI/II, PA; alpha helix 38.1 88 0.003 31.5 7.9 12 286-297 207-218 (497)
16 3mov_A Lamin-B1; LMNB1, B-type 37.7 39 0.0013 26.5 4.4 58 189-246 14-71 (95)
17 2k48_A Nucleoprotein; viral pr 37.0 1.3E+02 0.0045 24.6 7.4 53 187-239 42-102 (107)
18 4etp_A Kinesin-like protein KA 36.5 76 0.0026 30.3 7.0 53 188-247 4-56 (403)
19 2yib_D RNA-directed RNA polyme 35.0 10 0.00035 39.7 0.8 46 152-198 376-424 (770)
20 3aco_A Pacsin2, protein kinase 34.2 1.2E+02 0.0042 27.4 7.8 47 187-233 192-238 (350)
21 2pus_A IBDV VP1 RNA-dependant 33.8 13 0.00044 39.3 1.3 29 152-180 397-428 (852)
22 2yi9_A RNA-directed RNA polyme 32.3 13 0.00044 39.1 1.0 46 152-198 376-424 (799)
23 4etp_A Kinesin-like protein KA 32.2 1.3E+02 0.0046 28.6 8.0 41 182-222 5-45 (403)
24 3na7_A HP0958; flagellar bioge 31.7 2.5E+02 0.0084 24.7 9.2 9 191-199 108-116 (256)
25 3mud_A DNA repair protein XRCC 29.5 2.5E+02 0.0084 24.6 8.5 58 168-225 105-166 (175)
26 2bzb_A Conserved domain protei 27.8 1.1E+02 0.0036 22.4 5.0 48 189-243 3-50 (62)
27 1wn4_A Vontr protein; helix, p 27.3 25 0.00085 22.5 1.3 14 13-26 2-15 (28)
28 3oja_A Leucine-rich immune mol 26.5 2.8E+02 0.0097 25.9 9.1 53 192-244 422-474 (487)
29 1fxk_C Protein (prefoldin); ar 26.1 2.4E+02 0.0082 22.1 8.4 17 151-167 65-81 (133)
30 4e61_A Protein BIM1; EB1-like 25.9 1.9E+02 0.0065 23.4 6.6 18 227-244 30-47 (106)
31 2l6l_A DNAJ homolog subfamily 25.8 24 0.00083 28.8 1.4 34 48-84 116-149 (155)
32 2fic_A Bridging integrator 1; 25.5 1.9E+02 0.0063 24.8 7.1 38 203-243 181-218 (251)
33 2x3v_A Syndapin I, protein kin 24.6 3.6E+02 0.012 23.9 9.1 47 187-233 183-229 (337)
34 1gk4_A Vimentin; intermediate 23.3 2.4E+02 0.0081 21.1 8.2 22 189-210 35-56 (84)
35 1gk6_A Vimentin; intermediate 23.1 1.2E+02 0.0041 21.6 4.5 29 187-215 7-35 (59)
36 4h22_A Leucine-rich repeat fli 22.9 2.2E+02 0.0074 23.1 6.4 55 186-244 36-90 (103)
37 2yt7_A Amyloid beta A4 precurs 22.1 2.3E+02 0.0077 20.8 6.1 26 73-98 5-30 (101)
38 3u06_A Protein claret segregat 21.8 2.4E+02 0.0082 27.1 7.7 53 190-249 6-58 (412)
39 3iox_A AGI/II, PA; alpha helix 21.8 3.7E+02 0.013 27.1 9.1 20 217-236 85-104 (497)
40 3abh_A Pacsin2, protein kinase 21.7 1.1E+02 0.0038 27.0 5.0 47 187-233 192-238 (312)
41 3nmd_A CGMP dependent protein 21.4 1.1E+02 0.0038 23.3 4.2 23 188-210 20-42 (72)
42 3oa7_A Head morphogenesis prot 21.3 1E+02 0.0036 27.7 4.6 54 187-240 16-69 (206)
43 3vkg_A Dynein heavy chain, cyt 21.1 2.9E+02 0.0098 33.8 9.4 71 175-245 2005-2082(3245)
44 4dzo_A Mitotic spindle assembl 21.0 2.2E+02 0.0074 23.2 6.2 39 187-225 4-42 (123)
45 1dyn_A Dynamin; signal transdu 20.3 81 0.0028 26.1 3.5 44 132-175 50-98 (125)
No 1
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=94.03 E-value=0.16 Score=41.72 Aligned_cols=57 Identities=7% Similarity=0.163 Sum_probs=47.0
Q ss_pred cCCceeEeecC-ccceeeeeecce-eeEEEEEeCHHhhccceEEEEEeCCCCceEEEEeecc
Q 022105 27 NGMVTVRPLLL-DQHITRKVEKQC-AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDRE 86 (302)
Q Consensus 27 nG~v~v~~L~~-G~~~~~kVeKQ~-AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD~e 86 (302)
|..-++.||.+ |+.+.|.+..+. ..+|+++|+.. .-|=|.+.+..+..|..++|+.+
T Consensus 13 nsf~~An~l~~~n~~v~G~l~~~dd~D~y~F~V~~~---g~v~I~l~~~~~~~~~w~ly~~~ 71 (121)
T 3jqw_A 13 NSKETASGPIVPGIPVSGTIENTSDQDYFYFDVITP---GEVKIDINKLGYGGATWVVYDEN 71 (121)
T ss_dssp CSGGGCBCCCCTTSCEEEEECSTTCCEEEEEEESSC---EEEEEEEEECSSSEEEEEEECTT
T ss_pred CCHHHccccccCCcEEEEEeCCcCCeeEEEEEeCCC---CeEEEEEEecCCCcEEEEEEeCC
Confidence 33457888999 999999999665 99999999976 44667788888888999998887
No 2
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=84.94 E-value=3.6 Score=33.68 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=57.9
Q ss_pred HcCCceeEeecC-ccceeeeeecce-eeEEEEEeCHHhhccceEEEEEeCCCCceEEEEeeccC--CCcceEEEeeeccc
Q 022105 26 LNGMVTVRPLLL-DQHITRKVEKQC-AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREG--TGGLSLALQEDCTK 101 (302)
Q Consensus 26 ~nG~v~v~~L~~-G~~~~~kVeKQ~-AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD~e~--~Gg~~l~lQEdS~K 101 (302)
.|+.-++.||.+ |+.+.|.+..+. ..+|+++|++. .=|-|.+.+....-+-.++|+.+. | -+.- -+.+-.+
T Consensus 14 Nnsf~~An~l~~~n~~v~G~l~~~D~~D~y~f~v~~~---g~v~I~l~~~~~~~~~w~ly~~~dl~n-yv~y-~~~~gn~ 88 (119)
T 1nqj_A 14 NDSSDKATVIPNFNTTMQGSLLGDDSRDYYSFEVKEE---GEVNIELDKKDEFGVTWTLHPESNIND-RITY-GQVDGNK 88 (119)
T ss_dssp ------CEECCSSSCCEEEEECTTCCEEEEEEEESSC---EEEEEEEEESSSSEEEEEEEECC-----CCEE-CEEETTE
T ss_pred CCCHHHcceeccCCeEEEEEeCCCCCcEEEEEECCCC---CeEEEEEEeCCCCCEEEEEEccCCCcc-ceEE-eecCCCc
Confidence 456678899999 999999999977 99999999954 446688888888889999999874 2 1111 1333222
Q ss_pred c-Ccce-eeeeeeecce
Q 022105 102 T-GKVT-SAGMYFLGFP 116 (302)
Q Consensus 102 ~-~k~T-~A~myFlpf~ 116 (302)
. +++. .+|-|+|-..
T Consensus 89 ~~~~~~~~pGkYYl~Vy 105 (119)
T 1nqj_A 89 VSNKVKLRPGKYYLLVY 105 (119)
T ss_dssp EEEEEEECSEEEEEEEE
T ss_pred EEEEEEcCCcEEEEEEE
Confidence 2 3333 6999999543
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=79.78 E-value=8.8 Score=36.93 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCCCCCCcCC
Q 022105 193 EAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAPPMKRSTS 256 (302)
Q Consensus 193 E~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~~~~~~~~~ 256 (302)
+.++..+++++.+++.|-.+..++.+++-.+..+.+++++.+-++-.+.-+.+-.+|++.|-|.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~~~~ 592 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSH 592 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----------
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence 3333444455555555555666677777777777777777777777888888888888877553
No 4
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=76.52 E-value=17 Score=25.44 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
+.+..+|..+.....+.+.-+.+|.+++.++..+++.+..-+.+|.++=.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777888888899999999999999999888888877443
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=65.53 E-value=21 Score=29.76 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=41.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022105 185 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 237 (302)
Q Consensus 185 ~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~ 237 (302)
..+++...|.+|..+.+||..++.|-.+++.+.+++...+.....++++|-.+
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667788888888888888888888888888888888877777777777554
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=57.58 E-value=46 Score=29.50 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=17.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 022105 201 AELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 242 (302)
Q Consensus 201 ~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy 242 (302)
.++...+.++.++++..++.++... .++..|.++|+++-
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~---~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIK---ETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3333333333333333333333333 33556667776443
No 7
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.23 E-value=24 Score=27.26 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=30.7
Q ss_pred EEcCCChhhh--hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022105 177 LCAAPFTEEK--ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 177 l~~~~~~~~~--~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
+|.++.+.+. +.|...+.++...+.++..++.+..+......++..+|.
T Consensus 52 vCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 52 VCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766543 446777777777777777776666655555555544444
No 8
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.31 E-value=1e+02 Score=24.63 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022105 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 235 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL 235 (302)
.+.|+..|.++.....|+.++..++.+..++-.++-....+-.+++.+|=
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999998888877777777666666666666553
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.46 E-value=79 Score=26.22 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 234 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~L 234 (302)
..|.+.+.+|...|+||.+.+.++.++.+..++...++......+..|
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999888887777777
No 10
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.47 E-value=58 Score=29.12 Aligned_cols=44 Identities=39% Similarity=0.534 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 230 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~ 230 (302)
+.+...+++|...+.++..++..|+-+++-|+-.-.|..++.+.
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~ 102 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEA 102 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999888766
No 11
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.32 E-value=39 Score=27.00 Aligned_cols=58 Identities=9% Similarity=0.084 Sum_probs=26.7
Q ss_pred EEecCcccccceEEEEEEEcCCChhhhhhHHHHHHHHHHHHHHHHhh--HHHH---HHHHHHHHHHHHHHHH
Q 022105 160 AVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKF--ESEY---REVLAQFTEMTSRYAQ 226 (302)
Q Consensus 160 ~VYGDNwf~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~KK~EL~~F--e~EY---~eak~kf~ev~~r~~~ 226 (302)
+=|.|+|++.- +|. +....+.+..=.+++..|.||+.. |-|| ....++.+++...+++
T Consensus 5 ~~Yh~~wi~~l------~~~---s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~ 67 (93)
T 3sjb_C 5 NKYHEKWISKF------APG---NELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINN 67 (93)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH------ccC---cHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899998764 343 444566677777888888888753 4455 3445555555555543
No 12
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=43.42 E-value=1e+02 Score=24.03 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022105 190 RAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDEL 234 (302)
Q Consensus 190 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~L 234 (302)
+.|=.+|...|.....|+++-+++.++..+......+...++.+|
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888999999999999999999988877777777764
No 13
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=40.55 E-value=1.3e+02 Score=25.92 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 236 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~ 236 (302)
++|++.+..|..|.+-+..++.||.....++..+-.+......+=+.|+.
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666777777777777777777666666555553
No 14
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=40.47 E-value=96 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.180 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022105 191 AVEAEILSKRAELSKFESEYREVLAQFTEMTS 222 (302)
Q Consensus 191 ~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 222 (302)
..|.+|..+..|+.+.+..+....+.-.++-.
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~ 42 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEE 42 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333333333333
No 15
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.13 E-value=88 Score=31.53 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=8.1
Q ss_pred CCceeeeccccc
Q 022105 286 KKKWFNIHLKAD 297 (302)
Q Consensus 286 ~~kw~~~~~~~~ 297 (302)
..+|+.+.|+..
T Consensus 207 e~~w~~V~LkkG 218 (497)
T 3iox_A 207 QVKWGSVLLERG 218 (497)
T ss_dssp CCEEEEEEECTT
T ss_pred cceeeeeeecCC
Confidence 457887766654
No 16
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.67 E-value=39 Score=26.53 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhc
Q 022105 189 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 246 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~ 246 (302)
|..++++...--..|...+..|....+.+..+...++.+-+.+..=+...-.-|..++
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444555444444444444333333333333333
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=36.96 E-value=1.3e+02 Score=24.57 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEY--------REVLAQFTEMTSRYAQEMQAIDELLKQRN 239 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY--------~eak~kf~ev~~r~~~e~~~i~~LL~~Re 239 (302)
++|...|.||..-|.-|.+-+.-| ..+..+=..+++-|+..-.+++.+|+.+-
T Consensus 42 ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 42 ENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999998888888877 44566667777778777777777776653
No 18
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.46 E-value=76 Score=30.34 Aligned_cols=53 Identities=11% Similarity=0.278 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhcc
Q 022105 188 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 247 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~ 247 (302)
+|...+.+|...+.++.+.+.+..+++....++..+|.++. ..|..+|+.+..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~e 56 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQE 56 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 34555555555566666666666666666666666666554 345566666643
No 19
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 3.80A {Infectious pancreatic necrosis virus}
Probab=34.96 E-value=10 Score=39.66 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=31.8
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEEcCCChhhhhhHHHHHHHHHH
Q 022105 152 LKAGTHVFAVYGDNFF---KSASYMIEALCAAPFTEEKENLRAVEAEILS 198 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf---~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~ 198 (302)
|.||+|++=||+|||+ ...=|+|-.-..+.. ...+.++-++--|+.
T Consensus 376 l~~~e~~~lvYADN~YI~~~~~wySiDleKgEan-~t~~~a~ai~yyLLt 424 (770)
T 2yib_D 376 LDNDEDLVMIYADNIYILQDNTWYSIDLEKGEAN-CTPQHMQAMMYYLLT 424 (770)
T ss_dssp HHTTCCEEEEETTEEEEEETTEEEEEEETTGGGG-CCHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeccEEEEECCeEEEecccccccc-CCHHHHHHHHHHHHH
Confidence 7799999999999996 455566665544421 222667777777774
No 20
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=34.20 E-value=1.2e+02 Score=27.41 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~ 233 (302)
..+.+.+.++...+.++.+-+.+|+.+...+.+...+|.+++..+-+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888999999999999999999999999999999887766544
No 21
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Probab=33.84 E-value=13 Score=39.30 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.4
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEEcC
Q 022105 152 LKAGTHVFAVYGDNFF---KSASYMIEALCAA 180 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf---~~~~ytie~l~~~ 180 (302)
|.||+|++=||+|||+ ...=|+|-.-..+
T Consensus 397 la~~~~~vlvYADN~YI~~~~~wySiDleKgE 428 (852)
T 2pus_A 397 LAPEEPKALVYADNIYIVHSNTWYSIDLEKGE 428 (852)
T ss_dssp HSSCCSEEEEETTEEEEEETTEEEEEEETTGG
T ss_pred hCCCCceEEEEeccEEEEecCeEEEecccccc
Confidence 5799999999999996 4455666554443
No 22
>2yi9_A RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 2.20A {Infectious pancreatic necrosis virus} PDB: 2yi8_A 2yia_A 2yib_A
Probab=32.34 E-value=13 Score=39.06 Aligned_cols=46 Identities=17% Similarity=0.316 Sum_probs=31.6
Q ss_pred ccCCceEEEEecCccc---ccceEEEEEEEcCCChhhhhhHHHHHHHHHH
Q 022105 152 LKAGTHVFAVYGDNFF---KSASYMIEALCAAPFTEEKENLRAVEAEILS 198 (302)
Q Consensus 152 L~pG~Hlf~VYGDNwf---~~~~ytie~l~~~~~~~~~~~I~~vE~~l~~ 198 (302)
|.||+|++=||+|||+ ...=|+|-.-..+.. ...+.++-++--|+.
T Consensus 376 l~~~e~~~lvYADN~YI~~~~~wySiDleKgEan-~t~~~a~ai~yyLLt 424 (799)
T 2yi9_A 376 LDNDEDLVMIYADNIYILQDNTWYSIDLEKGEAN-CTPQHMQAMMYYLLT 424 (799)
T ss_dssp HHTTCCEEEEETTEEEEEETTEEEEEEETTGGGG-CCHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEeccEEEEecCeEEEecccccccc-CCHHHHHHHHHHHHh
Confidence 6799999999999996 455566665544421 122667777777773
No 23
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.20 E-value=1.3e+02 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=34.8
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 022105 182 FTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 222 (302)
Q Consensus 182 ~~~~~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~ 222 (302)
.+...++|..++.++.....++.+++.|+.+...++.+.-.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455889999999999999999999999999988876554
No 24
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.74 E-value=2.5e+02 Score=24.72 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 022105 191 AVEAEILSK 199 (302)
Q Consensus 191 ~vE~~l~~K 199 (302)
..|.+|+..
T Consensus 108 ~lE~eile~ 116 (256)
T 3na7_A 108 QANREIENL 116 (256)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 25
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=29.49 E-value=2.5e+02 Score=24.62 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=43.3
Q ss_pred ccceEEEEEEEc--CCChhh-h-hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022105 168 KSASYMIEALCA--APFTEE-K-ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 168 ~~~~ytie~l~~--~~~~~~-~-~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
+++++.+=.+-. .+...+ . +=|.-.|..+.....++..+|.+...++.+|..+...+.
T Consensus 105 k~vsfrLGs~~Lk~a~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 105 KDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp SSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777744433 223333 3 558889999999999999999999999999988887765
No 26
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=27.76 E-value=1.1e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 022105 189 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~ 243 (302)
++.+..+|..+|.||..+-..|- --..-|-+++ |+.|.||-+=..+..
T Consensus 3 ~~~L~~~IE~kR~eL~~l~~k~G----l~~~~vI~~S---QeLD~LIn~Y~k~~~ 50 (62)
T 2bzb_A 3 MGQLKNKIENKKKELIQLVARHG----LDHDKVLLFS---RDLDKLINKFMNVKD 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHH---HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----CCCHHHHHHH---HHHHHHHHHHHHHhc
Confidence 56788899999999988876662 2345566777 559999977555443
No 27
>1wn4_A Vontr protein; helix, plant protein; NMR {Synthetic} SCOP: j.113.1.1
Probab=27.32 E-value=25 Score=22.50 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=12.7
Q ss_pred ccccccHHHHHHHH
Q 022105 13 IKTTVSATVLEEAL 26 (302)
Q Consensus 13 I~T~Is~kVLeeA~ 26 (302)
.+|.||--+||||+
T Consensus 2 l~T~~sNplLEEAL 15 (28)
T 1wn4_A 2 LETQKPNHLLEEAL 15 (28)
T ss_dssp CTTSSTTHHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 57999999999996
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.49 E-value=2.8e+02 Score=25.92 Aligned_cols=53 Identities=17% Similarity=0.063 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 022105 192 VEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 192 vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s 244 (302)
..+++...|..+.+-..++.+-..+..+--+|++.+.++++..+..-++-|.+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 45555555555555556666666666666667777777776666655555544
No 29
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=26.06 E-value=2.4e+02 Score=22.15 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=11.0
Q ss_pred eccCCceEEEEecCccc
Q 022105 151 ELKAGTHVFAVYGDNFF 167 (302)
Q Consensus 151 ~L~pG~Hlf~VYGDNwf 167 (302)
.|.+-+|++---|.|||
T Consensus 65 ~i~~~~~V~v~lG~g~~ 81 (133)
T 1fxk_C 65 ELKDTSEVIMSVGAGVA 81 (133)
T ss_dssp ECCSTTEEEEEEETTEE
T ss_pred EECCCCEEEEEcCCCEE
Confidence 34455666666777776
No 30
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=25.85 E-value=1.9e+02 Score=23.44 Aligned_cols=18 Identities=11% Similarity=0.012 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHhhh
Q 022105 227 EMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 227 e~~~i~~LL~~Re~iy~s 244 (302)
.+..++.|-++|+--|+.
T Consensus 30 Lk~~ve~lEkERDFYF~K 47 (106)
T 4e61_A 30 YKGTVSTLEIEREFYFNK 47 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555544443
No 31
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=25.83 E-value=24 Score=28.83 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=25.5
Q ss_pred ceeeEEEEEeCHHhhccceEEEEEeCCCCceEEEEee
Q 022105 48 QCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFD 84 (302)
Q Consensus 48 Q~AhFy~v~itee~~~~GvVi~c~S~~~sKFKLl~FD 84 (302)
+|..+|.| +++++..|+||.|.|=+ =.|+++|-+
T Consensus 116 rCG~~f~i--~~~~l~~~~~v~C~sCS-l~~~v~~~~ 149 (155)
T 2l6l_A 116 RCGGKYSV--SKDEAEEVSLISCDTCS-LIIELLHYN 149 (155)
T ss_dssp SSSCEEEE--ETTHHHHCCEEECSSSS-CEEEEECCC
T ss_pred CCCCeEEe--cHHHhCCCCEEECCCCc-eEEEEEEcc
Confidence 47778864 56777789999999987 567777644
No 32
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=25.53 E-value=1.9e+02 Score=24.82 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=27.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 022105 203 LSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 243 (302)
Q Consensus 203 L~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~ 243 (302)
|.+.+.|+.+|+..|+.+.+.+..| +..|...|-..+.
T Consensus 181 l~kae~el~~ak~~ye~ln~~L~~e---Lp~l~~~~~~~~~ 218 (251)
T 2fic_A 181 IAKAEEELIKAQKVFEEMNVDLQEE---LPSLWNSRVGFYV 218 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4457788999999999998777755 5566666655444
No 33
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=24.64 E-value=3.6e+02 Score=23.93 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~ 233 (302)
.++.+++.++...+.++.+-+.+|+.+...+.+....|.+++..+-+
T Consensus 183 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 229 (337)
T 2x3v_A 183 EQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFE 229 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45777888899999999999999999999999998888887765544
No 34
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.30 E-value=2.4e+02 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 022105 189 LRAVEAEILSKRAELSKFESEY 210 (302)
Q Consensus 189 I~~vE~~l~~KK~EL~~Fe~EY 210 (302)
|..+|++|...|.+|..--.||
T Consensus 35 i~~lE~eL~~~r~e~~~q~~EY 56 (84)
T 1gk4_A 35 IGRLQDEIQNMKEEMARHLREY 56 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443444
No 35
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=23.11 E-value=1.2e+02 Score=21.57 Aligned_cols=29 Identities=7% Similarity=0.206 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLA 215 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~ 215 (302)
..|..+|++|...|.+|..--.||.+.+.
T Consensus 7 ~~i~~le~el~~~r~e~~~q~~eYq~Lln 35 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVARLKKLVGDLLN 35 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998889876543
No 36
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=22.88 E-value=2.2e+02 Score=23.08 Aligned_cols=55 Identities=22% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Q 022105 186 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 244 (302)
Q Consensus 186 ~~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s 244 (302)
.++|.+.|..+..-+.|+..-.+|+..-+...+.....+.. +.+-|++|+++..+
T Consensus 36 KD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~----lk~~L~qRD~LI~E 90 (103)
T 4h22_A 36 KDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAE----VKEALKQREEMLEP 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
No 37
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=22.09 E-value=2.3e+02 Score=20.78 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=20.2
Q ss_pred CCCCceEEEEeeccCCCcceEEEeee
Q 022105 73 SDKSKFKLLYFDREGTGGLSLALQED 98 (302)
Q Consensus 73 ~~~sKFKLl~FD~e~~Gg~~l~lQEd 98 (302)
...+.++.|...+..++||++.++++
T Consensus 5 ~~~~~~~~v~l~k~~g~~lG~~i~~~ 30 (101)
T 2yt7_A 5 SSGDNCREVHLEKRRGEGLGVALVES 30 (101)
T ss_dssp STTCCCEEEEEECCTTCCCCEEEEEC
T ss_pred CCCCceEEEEEEeCCCCccCEEEEeC
Confidence 45578888888887667899999853
No 38
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=21.84 E-value=2.4e+02 Score=27.07 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhccCC
Q 022105 190 RAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTAP 249 (302)
Q Consensus 190 ~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~iy~s~~~~~ 249 (302)
..+|+++...++++.+.+.+..+.++...++.+++.++ -.+|..+|+.+....
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-------~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-------NMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhC
Confidence 45666677777777777776666666666666555433 356778888776544
No 39
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.77 E-value=3.7e+02 Score=27.09 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 022105 217 FTEMTSRYAQEMQAIDELLK 236 (302)
Q Consensus 217 f~ev~~r~~~e~~~i~~LL~ 236 (302)
|+.-...|.++..++++.|+
T Consensus 85 Y~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 85 YPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444
No 40
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=21.71 E-value=1.1e+02 Score=26.99 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 233 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~ 233 (302)
.++.+++.++...+.++.+-+.+|..+...+.++..+|.+++..+-+
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~ 238 (312)
T 3abh_A 192 EQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFE 238 (312)
T ss_dssp HHHHGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44666677788888899999999999999999999999887766544
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.40 E-value=1.1e+02 Score=23.30 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHH
Q 022105 188 NLRAVEAEILSKRAELSKFESEY 210 (302)
Q Consensus 188 ~I~~vE~~l~~KK~EL~~Fe~EY 210 (302)
.|++++..|..|.+||+.-+.--
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I 42 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALI 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777666543
No 42
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=21.26 E-value=1e+02 Score=27.69 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 240 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~~e~~~i~~LL~~Re~ 240 (302)
+++-+-|-.-..+-+-|++++.||+.|...|.+.+........+.++|=+.=+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~k 69 (206)
T 3oa7_A 16 NKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGN 69 (206)
T ss_dssp HHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555555556667789999999999999999999998887777776443333
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.07 E-value=2.9e+02 Score=33.80 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEcCCChhhh----hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHhhhh
Q 022105 175 EALCAAPFTEEK----ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS---RYAQEMQAIDELLKQRNEIHASY 245 (302)
Q Consensus 175 e~l~~~~~~~~~----~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~---r~~~e~~~i~~LL~~Re~iy~s~ 245 (302)
++.|+.|--.+. +++...+++|..++++|...+.+-.+.+++|++++. +++.+.+.+..=|..=+.+-..+
T Consensus 2005 ~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2005 KAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 44
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=21.01 E-value=2.2e+02 Score=23.19 Aligned_cols=39 Identities=5% Similarity=0.223 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 022105 187 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 225 (302)
Q Consensus 187 ~~I~~vE~~l~~KK~EL~~Fe~EY~eak~kf~ev~~r~~ 225 (302)
.+|.+++++|....+-++.++.-|.+.-..|.+++..+-
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~Ll 42 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLT 42 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888777777777666443
No 45
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=20.32 E-value=81 Score=26.14 Aligned_cols=44 Identities=14% Similarity=0.450 Sum_probs=26.1
Q ss_pred CCChhhhhcccCccccceee-ccCCceEEEEe---cCcccccc-eEEEE
Q 022105 132 DPDAAFFKKLDGFQPCEITE-LKAGTHVFAVY---GDNFFKSA-SYMIE 175 (302)
Q Consensus 132 d~~~a~F~~Ld~fq~~e~~~-L~pG~Hlf~VY---GDNwf~~~-~ytie 175 (302)
|.++-.-=-|++++.+++.. -..+.|.|.|| |.|=+++- .|.|.
T Consensus 50 eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~h~~y~Ls 98 (125)
T 1dyn_A 50 EKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKDYRQLELA 98 (125)
T ss_dssp CSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTTCSSEEEE
T ss_pred ccccceEEECCCceEeccCCCCCCCceEEEEECCCCccccccceEEEEe
Confidence 33333334578887766432 11578999999 56655543 44443
Done!