BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022109
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XDR|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
pdb|2XDR|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant E252a From Pseudomonas Aeruginosa
Length = 489
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 91 TLGFKTYAPAYLSPQA---TGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREY 147
T+ +P + P A ++ + ANF S+G + T H +QQ ++ +
Sbjct: 249 TMALGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHR---SQQARFEAKV 305
Query: 148 QSKLAKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESG--------CVSRINTDAQQF 199
++ + LG + T+ PL P ++ GY ESG C TD F
Sbjct: 306 LERVQR--IRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDG-AF 362
Query: 200 NKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLV 232
K A T D+ IV +IF P+ ++
Sbjct: 363 GKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 395
>pdb|2UU7|A Chain A, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|B Chain B, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|C Chain C, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|D Chain D, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|E Chain E, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|F Chain F, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|G Chain G, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|H Chain H, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|I Chain I, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|J Chain J, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|K Chain K, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|L Chain L, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|M Chain M, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|N Chain N, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
pdb|2UU7|O Chain O, Crystal Structure Of Apo Glutamine Synthetase From Dog (
Canis Familiaris)
Length = 381
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 25/128 (19%)
Query: 63 PPYGRDFINHQPTGRFCNGKLATDFTADTLGFKTYAPAYLSPQATGKNLLIGANFASAGS 122
P G D +H RF ++ DF T+ P I N+ AG
Sbjct: 208 PCEGIDMGDHLWVARFILHRVCEDFGV----IATFDPK-----------PIPGNWNGAGC 252
Query: 123 GYDDRTSYLNHAISLTQQLQYYREYQSKLAKNMYGLGARKFGVTSLPPLGCLPAARTLFG 182
T++ A+ L+Y E KL+K ++ + + P G L AR L G
Sbjct: 253 ----HTNFSTKAMREENGLKYIEESIEKLSKR------HQYHIRAYDPKGGLDNARRLTG 302
Query: 183 YHESGCVS 190
+HE+ ++
Sbjct: 303 FHETSNIN 310
>pdb|2WME|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|E Chain E, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 490
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 110 NLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKNMYGLGARKFGVTSLP 169
++ + ANF S+G + T H +QQ ++ + ++ + LG + T+
Sbjct: 272 DIAVMANFFSSGQVXTNGTRVFIHR---SQQARFEAKVLERVQR--IRLGDPQDENTNFG 326
Query: 170 PLGCLPAARTLFGYHESG--------CVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVI 221
PL P ++ GY ESG C TD F K A T D+ IV
Sbjct: 327 PLVSFPHMESVLGYIESGKAQKARLLCGGERVTDG-AFGKGAYVAPTVFTDCRDDMTIVR 385
Query: 222 FDIFKPIYDLV 232
+IF P+ ++
Sbjct: 386 EEIFGPVMSIL 396
>pdb|3ZQA|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|C Chain C, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
pdb|3ZQA|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase Mutant C286a From Pseudomonas Aeruginosa
In Complex With Nadph
Length = 490
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 110 NLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKNMYGLGARKFGVTSLP 169
++ + ANF S+G + T H +QQ ++ + ++ + LG + T+
Sbjct: 272 DIAVMANFFSSGQVATNGTRVFIHR---SQQARFEAKVLERVQR--IRLGDPQDENTNFG 326
Query: 170 PLGCLPAARTLFGYHESG--------CVSRINTDAQQFNKKVSSAATNLQKQLPDLKIVI 221
PL P ++ GY ESG C TD F K A T D+ IV
Sbjct: 327 PLVSFPHMESVLGYIESGKAQKARLLCGGERVTDG-AFGKGAYVAPTVFTDCRDDMTIVR 385
Query: 222 FDIFKPIYDLV 232
+IF P+ ++
Sbjct: 386 EEIFGPVMSIL 396
>pdb|2WOX|A Chain A, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|B Chain B, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|C Chain C, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct.
pdb|2WOX|D Chain D, Betaine Aldehyde Dehydrogenase From Pseudomonas Aeruginosa
With Nad(P)h-Catalytic Thiol Adduct
Length = 489
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 91 TLGFKTYAPAYLSPQA---TGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREY 147
T+ +P + P A ++ + ANF S+G + T H +QQ ++ +
Sbjct: 249 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHR---SQQARFEAKV 305
Query: 148 QSKLAKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESG--------CVSRINTDAQQF 199
++ + LG + T+ PL P ++ GY ESG C TD F
Sbjct: 306 LERVQR--IRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDG-AF 362
Query: 200 NKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLV 232
K A T D+ IV +IF P+ ++
Sbjct: 363 GKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 395
>pdb|2WME|A Chain A, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|B Chain B, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|D Chain D, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|F Chain F, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|G Chain G, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
pdb|2WME|H Chain H, Crystallographic Structure Of Betaine Aldehyde
Dehydrogenase From Pseudomonas Aeruginosa
Length = 490
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 17/153 (11%)
Query: 91 TLGFKTYAPAYLSPQA---TGKNLLIGANFASAGSGYDDRTSYLNHAISLTQQLQYYREY 147
T+ +P + P A ++ + ANF S+G + T H +QQ ++ +
Sbjct: 250 TMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHR---SQQARFEAKV 306
Query: 148 QSKLAKNMYGLGARKFGVTSLPPLGCLPAARTLFGYHESG--------CVSRINTDAQQF 199
++ + LG + T+ PL P ++ GY ESG C TD F
Sbjct: 307 LERVQR--IRLGDPQDENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDG-AF 363
Query: 200 NKKVSSAATNLQKQLPDLKIVIFDIFKPIYDLV 232
K A T D+ IV +IF P+ ++
Sbjct: 364 GKGAYVAPTVFTDCRDDMTIVREEIFGPVMSIL 396
>pdb|2OJW|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2OJW|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Phosphate
pdb|2QC8|A Chain A, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|B Chain B, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|C Chain C, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|D Chain D, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|E Chain E, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|F Chain F, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|G Chain G, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|H Chain H, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|I Chain I, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
pdb|2QC8|J Chain J, Crystal Structure Of Human Glutamine Synthetase In Complex
With Adp And Methionine Sulfoximine Phosphate
Length = 384
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 113 IGANFASAGSGYDDRTSYLNHAISLTQQLQYYREYQSKLAKNMYGLGARKFGVTSLPPLG 172
I N+ AG T++ A+ L+Y E KL+K ++ + + P G
Sbjct: 262 IPGNWNGAGC----HTNFSTKAMREENGLKYIEEAIEKLSKR------HQYHIRAYDPKG 311
Query: 173 CLPAARTLFGYHES 186
L AR L G+HE+
Sbjct: 312 GLDNARRLTGFHET 325
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,208,312
Number of Sequences: 62578
Number of extensions: 317394
Number of successful extensions: 623
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 7
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)