BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022110
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DK4|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
pdb|1DK4|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase
pdb|1G0H|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0H|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|A Chain A, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
pdb|1G0I|B Chain B, Crystal Structure Of Mj0109 Gene Product Inositol
Monophosphatase-Fructose 1,6 Bisphosphatase
Length = 252
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 183 GDKTSLRKAVTE----KMYSALKNEIKQRE--SMWSSVNWEL-IEPI------IKMRTLR 229
GD+T + ++E K +L I E + +S W + I+PI I
Sbjct: 37 GDETEIFDKISEDIALKYLKSLNVNIVSEELGVIDNSSEWTVVIDPIDGSFNFINGIPFF 96
Query: 230 ARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTK 273
A GV +N N+ + LT EFL K +EAY KG + G K K
Sbjct: 97 AFCFGVFKN--NEPYYGLTYEFLTKSFYEAYKGKGAYLNGRKIK 138
>pdb|2DZX|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
pdb|2DZX|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E131- 132a) From A Hyperthermophile, Pyrococcus
Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2E09|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2E09|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E74a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZW|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZW|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E244a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZS|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZS|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(E103a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|1GEQ|A Chain A, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1GEQ|B Chain B, Entropic Stabilization Of The Tryptophan Synthase
A-Subunit From A Hyperthermophile, Pyrococcus Furiosus:
X-Ray Analysis And Calorimetry
pdb|1WDW|A Chain A, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|C Chain C, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|E Chain E, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|G Chain G, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|I Chain I, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
pdb|1WDW|K Chain K, Structural Basis Of Mutual Activation Of The Tryptophan
Synthase A2b2 Complex From A Hyperthermophile,
Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZV|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZV|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D146a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZT|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZT|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110a) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZU|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZU|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D110n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
>pdb|2DZP|A Chain A, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
pdb|2DZP|B Chain B, Structure Of Mutant Tryptophan Synthase Alpha-Subunit
(D17n) From A Hyperthermophile, Pyrococcus Furiosus
Length = 248
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 166 YTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMW 211
Y A++L + +A+G K + E Y ALKN K RE+ W
Sbjct: 31 YAGAIELGIPFSDPIADG------KTIQESHYRALKNGFKLREAFW 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,000,529
Number of Sequences: 62578
Number of extensions: 291113
Number of successful extensions: 785
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 14
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)