Query 022110
Match_columns 302
No_of_seqs 176 out of 695
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:06:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4599 Putative mitochondrial 100.0 7.1E-40 1.5E-44 308.5 1.0 250 34-301 39-315 (379)
2 PF04280 Tim44: Tim44-like dom 100.0 4.8E-31 1E-35 223.3 18.4 144 149-301 2-147 (147)
3 TIGR00984 3a0801s03tim44 mitoc 99.9 6E-24 1.3E-28 205.8 17.9 147 142-297 221-377 (378)
4 COG4395 Uncharacterized protei 99.9 4.4E-23 9.4E-28 191.8 12.7 143 149-300 134-278 (281)
5 PF07961 MBA1: MBA1-like prote 99.9 5.9E-22 1.3E-26 181.4 18.1 186 104-300 9-199 (235)
6 KOG2580 Mitochondrial import i 99.8 6.3E-20 1.4E-24 177.5 12.0 151 138-297 291-448 (459)
7 KOG4599 Putative mitochondrial 97.8 4.8E-06 1E-10 80.1 0.2 198 33-302 182-379 (379)
8 PF13355 DUF4101: Protein of u 95.8 0.26 5.7E-06 40.8 12.3 97 183-298 20-117 (117)
9 PF12893 Lumazine_bd_2: Putati 94.6 0.36 7.7E-06 39.0 9.2 93 168-300 5-114 (116)
10 PF12870 Lumazine_bd: Lumazine 89.4 4.9 0.00011 31.0 9.6 31 168-198 8-38 (111)
11 PF14534 DUF4440: Domain of un 74.6 31 0.00068 25.7 8.5 27 170-196 2-28 (107)
12 PF13474 SnoaL_3: SnoaL-like d 73.1 40 0.00087 25.9 11.0 26 170-195 2-27 (121)
13 PF13211 DUF4019: Protein of u 63.1 80 0.0017 25.6 10.7 80 187-298 25-104 (105)
14 PF08898 DUF1843: Domain of un 59.7 28 0.00061 25.2 4.9 34 174-207 5-50 (53)
15 PRK09635 sigI RNA polymerase s 43.9 46 0.00099 31.5 5.3 44 152-197 159-204 (290)
16 cd00781 ketosteroid_isomerase 40.8 28 0.0006 27.4 2.9 30 168-197 4-33 (122)
17 PF11444 DUF2895: Protein of u 40.7 48 0.001 30.3 4.6 47 166-212 64-116 (199)
18 PRK10533 putative lipoprotein; 37.5 1.9E+02 0.0042 25.7 7.6 37 169-207 45-82 (171)
19 PRK06342 transcription elongat 36.5 1.1E+02 0.0024 26.7 6.1 47 114-187 15-61 (160)
20 PRK09636 RNA polymerase sigma 35.0 59 0.0013 30.4 4.5 44 151-196 155-200 (293)
21 TIGR02957 SigX4 RNA polymerase 34.2 71 0.0015 29.8 4.9 30 167-196 164-193 (281)
22 PF07729 FCD: FCD domain; Int 33.7 1.1E+02 0.0024 23.2 5.3 37 160-196 87-123 (125)
23 TIGR02096 conserved hypothetic 33.3 26 0.00057 27.7 1.6 27 171-197 2-28 (129)
24 TIGR02960 SigX5 RNA polymerase 32.8 54 0.0012 30.8 3.9 32 165-196 202-233 (324)
25 PF08858 IDEAL: IDEAL domain; 32.8 75 0.0016 21.0 3.4 25 170-194 12-36 (37)
26 PF05223 MecA_N: NTF2-like N-t 29.0 3E+02 0.0066 22.0 9.0 29 168-196 2-30 (118)
27 TIGR02246 conserved hypothetic 27.5 63 0.0014 25.2 2.9 29 168-196 5-33 (128)
28 PF08332 CaMKII_AD: Calcium/ca 25.0 66 0.0014 27.1 2.7 29 167-195 3-31 (128)
29 TIGR03746 conj_TIGR03746 integ 23.8 1E+02 0.0022 28.2 3.7 44 169-212 68-117 (202)
30 PRK08241 RNA polymerase factor 23.6 96 0.0021 29.4 3.8 33 164-196 211-243 (339)
31 PF09322 DUF1979: Domain of un 22.6 64 0.0014 23.5 1.8 37 252-290 2-38 (58)
32 PF01963 TraB: TraB family; I 21.0 1E+02 0.0022 27.7 3.3 27 168-194 171-197 (259)
33 PF12690 BsuPI: Intracellular 21.0 58 0.0013 25.2 1.4 27 243-269 12-40 (82)
No 1
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-40 Score=308.54 Aligned_cols=250 Identities=17% Similarity=0.249 Sum_probs=223.4
Q ss_pred cccccccccccccccccccccCCCCCCccccccccccccCccccccccc-----cccCccCCCC---ChhHhhhcCcceE
Q 022110 34 SGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNE-----KRFATAQPKA---PAQARQMQGALKV 105 (302)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~i 105 (302)
-++++.+| ..+|--+||-|.|+. +++.|+-..++|+.... ++.++.+..+ .+|+.|++. +|
T Consensus 39 qn~Ip~~~------~d~l~t~~~f~~f~~---l~~~kfe~~d~p~~~~k~~~i~kek~k~~~~a~~v~~Pr~~ne~--~i 107 (379)
T KOG4599|consen 39 QNFIPDPE------NDSLNTKEWFPSFKN---LSGAKFESGDDPDPILKRTIISKEKMKSANKAGLVIPPRKWNER--PI 107 (379)
T ss_pred hhhCcchh------ccCCCChhhhhhhhc---cCcccccccCCccccccccchhhhhhccccccccccCCcccccc--ce
Confidence 44555553 444556799999999 99999999999998874 3455555554 555669998 99
Q ss_pred EEecCCcccccCCCCCCCCcccccccccchhhcHHHHHHHHhHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHHH
Q 022110 106 SISSPGFIYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRK----SGYSKQKFYTEAVDLYKEINTLMA 181 (302)
Q Consensus 106 ~i~s~g~I~epyvPp~~~~~~~~~~t~~g~k~~~~~l~~~~ks~~al~kir~----p~F~~~~F~~~Ak~iy~~I~eA~a 181 (302)
.++|+|+|||+||||+|+++ .+.++..|+.+..+.+.+++.++++++.+++ .+|+.++|-+.|+++|+++|.|++
T Consensus 108 ~f~~~~gIfD~yVPPegdg~-~~~l~skg~~~~~~~~~k~~~~q~sir~i~~k~~~~~F~ik~f~~kakDifIqaH~~l~ 186 (379)
T KOG4599|consen 108 HFSCTGGIFDAYVPPEGDGK-KSILSSKGLIQKTEILEKTVASQMSIRRIRDKDEIENFEIKDFGAKAKDIFIQAHLCLN 186 (379)
T ss_pred EEEeecccccccCCCCCCcc-cchhcCcchhHHHHHHHHHHHHHhhhhhhccCCcccceeccccchHhHHHHHHHHHHHh
Confidence 99999999999999999997 7788999999999999999999999999998 589999999999999999999999
Q ss_pred cCCHHHHHHhhcH---------------HHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEE
Q 022110 182 NGDKTSLRKAVTE---------------KMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQ 246 (302)
Q Consensus 182 ~gD~~~Lr~lvTe---------------~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~Q 246 (302)
+.|+..+..++|| .||+.|...++. .+++|+||.+++|+++|++||.+..+. ..+.++|
T Consensus 187 ~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k~K~-----~~vR~~~vs~leP~~vv~~rc~d~~~~-s~n~~aq 260 (379)
T KOG4599|consen 187 NSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEKVKK-----GTVRWSFVSVLEPSRVVYVRCDDDNDK-SGNFIAQ 260 (379)
T ss_pred cChHHHHHHHhhccccccccCCCccchhhhccccchhhcc-----CceeEEEEeecccceeEEEEecCCccc-cccccee
Confidence 9999999999999 999999988654 489999999999999999999876654 2689999
Q ss_pred EEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022110 247 LTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 301 (302)
Q Consensus 247 VTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~ 301 (302)
||||+|++|.+++||++|+++.|+++..+||+||+||+.|+.+.++.||++++|.
T Consensus 261 itvRkh~~q~Lavydrfg~lm~g~E~i~KDv~eyvvfe~hi~~~~g~wr~h~kiv 315 (379)
T KOG4599|consen 261 ITVRKHTRQCLAVYDRFGRLMFGSEDIKKDVLEYVVFENHIQNAYGRWRLHKKIV 315 (379)
T ss_pred eehHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHhhhhhhhhhhhccccc
Confidence 9999999999999999999999999999999999999999999999999999874
No 2
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=99.97 E-value=4.8e-31 Score=223.27 Aligned_cols=144 Identities=30% Similarity=0.460 Sum_probs=123.9
Q ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccce
Q 022110 149 AYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR 226 (302)
Q Consensus 149 ~~al~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~r 226 (302)
+.|++.|++ |+|++..|+++|+++|..|++||++||++.|+++||+++|+.|..+++.+...|.+ +..+.+.
T Consensus 2 a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~------~~~~~v~ 75 (147)
T PF04280_consen 2 ASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEV------NDPEIVR 75 (147)
T ss_dssp HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEE------EEEEEEE
T ss_pred chHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCc------ccceEEE
Confidence 456777776 99999999999999999999999999999999999999999999999999877753 4566777
Q ss_pred EEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEee
Q 022110 227 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRIK 301 (302)
Q Consensus 227 vv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki~ 301 (302)
+++++++++... +.+++|||+|+++|+++++|+.|++++|+++.+..+.|||+|+|++++++++|+|+|+.+
T Consensus 76 i~~~~i~~~~~~---~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~~~~~W~L~~i~q 147 (147)
T PF04280_consen 76 IDNAEIVEAEQE---GNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGSPNPNWRLAGIQQ 147 (147)
T ss_dssp EEEEEEEEEEEE---TTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TTCCCTEEEEEEE-
T ss_pred EEEEEeeeceee---CCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCCCCCCEEEEEEeC
Confidence 888888877654 799999999999999999999999999999999999999999999999999999999864
No 3
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=99.92 E-value=6e-24 Score=205.76 Aligned_cols=147 Identities=20% Similarity=0.301 Sum_probs=125.8
Q ss_pred HHHHHhHHHHHHHHHh--CCCChHHHHHHHHHH-HHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeee
Q 022110 142 IILELKSAYAIAKLRK--SGYSKQKFYTEAVDL-YKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWEL 218 (302)
Q Consensus 142 l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~i-y~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ 218 (302)
+..+...+.+|++|+. |+|++..|+.+|+++ |++|.+||++||.+.|+.||++.+|+.|...|++|...|.+++-+|
T Consensus 221 lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~kGD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~i 300 (378)
T TIGR00984 221 MFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVKGDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRI 300 (378)
T ss_pred ccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEE
Confidence 4446667888999997 999999999999998 8999999999999999999999999999999999999998655443
Q ss_pred ecccccceEEEEEEeeeecccc-C-CcEEEEEEEEEeEEeeEEEcCC-CceecCCCCCeeeeeEEEEEEEeCCC----CC
Q 022110 219 IEPIIKMRTLRARLIGVDRNDL-N-KVFVQLTLEFLAKQKFEAYDSK-GVTVAGDKTKEVLVRDIWVFEKSLFH----PG 291 (302)
Q Consensus 219 ve~le~~rvv~arli~i~~~~~-~-~~~~QVTVRF~s~Q~lavyD~~-GrlV~G~~d~~~dV~EyWVFeR~l~~----~~ 291 (302)
|+++=++|..+.+ + ++.+.|+|+|.++|+.|++|++ |+||+|+++.+..+.+.|+|+|++.. ++
T Consensus 301 ---------L~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVeGd~d~I~~v~yvWtF~Rd~~~~~~~~~ 371 (378)
T TIGR00984 301 ---------LDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVAGDPDNIQRINYAWVFTRDVEELDNPET 371 (378)
T ss_pred ---------eeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceeeCCCCceeEEEEEEEEEEcccccCCCCC
Confidence 3333333333333 1 4689999999999999999999 99999999999999999999999863 56
Q ss_pred CCeEEE
Q 022110 292 AYWRLC 297 (302)
Q Consensus 292 ~~WrL~ 297 (302)
+.|||.
T Consensus 372 ~~Wrl~ 377 (378)
T TIGR00984 372 LGWKIL 377 (378)
T ss_pred Cceeec
Confidence 789985
No 4
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.89 E-value=4.4e-23 Score=191.80 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=124.4
Q ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccce
Q 022110 149 AYAIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMR 226 (302)
Q Consensus 149 ~~al~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~r 226 (302)
.-+++.+.+ |.|++..|+.+|+.+|.+|++||+++|.++|++|+|+++|+.|++++.+|+..|.+..=+
T Consensus 134 ~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~ss--------- 204 (281)
T COG4395 134 AAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQSS--------- 204 (281)
T ss_pred ccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccce---------
Confidence 334556665 999999999999999999999999999999999999999999999999999888753322
Q ss_pred EEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110 227 TLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300 (302)
Q Consensus 227 vv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki 300 (302)
-|..-..+|...+..++..++||+|..+-+...+|+.|++|+||++.+.++.|+|+|+|...+.+++|+|.++=
T Consensus 205 fv~~~~~di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~~s~~p~W~LaaIq 278 (281)
T COG4395 205 FVTILQADIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDTGSRDPNWKLAAIQ 278 (281)
T ss_pred ecchhhhhhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccCCCCCCCceEEeee
Confidence 23333345555555689999999999999999999999999999999999999999999999999999999864
No 5
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]. It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].
Probab=99.89 E-value=5.9e-22 Score=181.44 Aligned_cols=186 Identities=24% Similarity=0.362 Sum_probs=158.2
Q ss_pred eEEEecCCcccccCCCCCCCCccccccc-c-cchhhcHHHHHHHHhHHHHHHHHHh-C--CCChHHHHHHHHHHHHHHHH
Q 022110 104 KVSISSPGFIYEPYAPREAIPFWRRWFT-R-DGWRRTKDDIILELKSAYAIAKLRK-S--GYSKQKFYTEAVDLYKEINT 178 (302)
Q Consensus 104 ~i~i~s~g~I~epyvPp~~~~~~~~~~t-~-~g~k~~~~~l~~~~ks~~al~kir~-p--~F~~~~F~~~Ak~iy~~I~e 178 (302)
+|.+...|...|+||||.. ++++|+ + ..|+..+.++.....+.+.+.+.|. . .+.-..+.+.|.+.|+.+++
T Consensus 9 ~~~~~~iGv~~~~yipps~---~ps~~~~P~~~~~~l~rr~~~~~~Nt~~i~~fr~~~g~k~~f~~wk~~AiE~yv~~Nk 85 (235)
T PF07961_consen 9 QFPIRHIGVMADTYIPPSF---LPSPFTSPKVWWKLLIRRLYMFALNTVSIAKFRRQTGKKPRFNEWKNKAIELYVQMNK 85 (235)
T ss_pred cCCcccceeccccccChhh---ccCcccChhHHHHHHHHHHHHHhhhhheeeehhhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 6778899999999999976 355554 3 4577788888888889988887776 3 34456999999999999999
Q ss_pred HHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeE
Q 022110 179 LMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFE 258 (302)
Q Consensus 179 A~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~la 258 (302)
|||+||.+.|+..|+..+++.|.+.+++++.. .++.|++++..+.|++|+.+.+.++.. ...+.|++|+|+|+|++.
T Consensus 86 aFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~~-~kl~W~L~k~~~~PKvvs~~~~~~p~~--~~~~vQ~Vvk~~TkQ~li 162 (235)
T PF07961_consen 86 AFAAGDLDKLRKICSSWVYESLAARIKQRPKN-SKLDWKLVKYNKNPKVVSFQAIPIPGG--PLEIVQFVVKFDTKQRLI 162 (235)
T ss_pred HHHhccHHHHHHHhhHHHHHHHHHHHHhCCCC-CeeeEEEEEecCCCeEEEEeeeecCCC--CCeEEEEEEEEeeeEEEE
Confidence 99999999999999999999999999999865 589999999999999999999888764 346999999999999998
Q ss_pred EEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110 259 AYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300 (302)
Q Consensus 259 vyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki 300 (302)
.+|+.+..+++. .+||+||.||.++.. .+.|+|+|++
T Consensus 163 ~~~k~~~~~~~~---e~dvveyiV~~~d~~--t~e~~l~Gsv 199 (235)
T PF07961_consen 163 KVDKGSEKVEKK---ERDVVEYIVFQCDPW--TNEWVLWGSV 199 (235)
T ss_pred EeccccccCCcc---ccceeeeEEEEEeCC--CCcEEEEEEe
Confidence 888776655443 569999999998754 4599999987
No 6
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6.3e-20 Score=177.52 Aligned_cols=151 Identities=22% Similarity=0.321 Sum_probs=130.8
Q ss_pred cHHHHHHHHhHHHHHHHHHh--CCCChHHHHHHHHHHH-HHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHHhccCCce
Q 022110 138 TKDDIILELKSAYAIAKLRK--SGYSKQKFYTEAVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQRESMWSSV 214 (302)
Q Consensus 138 ~~~~l~~~~ks~~al~kir~--p~F~~~~F~~~Ak~iy-~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv 214 (302)
.+..|..+......+.+|++ |+||.++|+.++++.. ++|.+|+-.||++.|+.||+|+.|+.+.+.+++.+..|-
T Consensus 291 ~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv-- 368 (459)
T KOG2580|consen 291 VDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGV-- 368 (459)
T ss_pred cccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCe--
Confidence 34456666777778888887 9999999999998766 679999999999999999999999999999999987664
Q ss_pred eeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCC--CC--
Q 022110 215 NWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLF--HP-- 290 (302)
Q Consensus 215 ~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~--~~-- 290 (302)
..+-|+|+++=|+|....+-.+.+.+.|.|++|+++|++|.+|+||+|++|++..|.+.|||+|+.. ++
T Consensus 369 -------~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQeI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El~~d~ 441 (459)
T KOG2580|consen 369 -------YFDSKILDIRGVDIASGKMMEDGPVLIITFQAQEIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDELNPDE 441 (459)
T ss_pred -------eecceeeeeccchhHHhhhhccCCEEEEEEeeEEEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhcCcch
Confidence 2466778887777776666679999999999999999999999999999999999999999999764 44
Q ss_pred CCCeEEE
Q 022110 291 GAYWRLC 297 (302)
Q Consensus 291 ~~~WrL~ 297 (302)
++.|||.
T Consensus 442 ~~~WRLl 448 (459)
T KOG2580|consen 442 YAAWRLL 448 (459)
T ss_pred hhhHHHH
Confidence 7789974
No 7
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=4.8e-06 Score=80.05 Aligned_cols=198 Identities=20% Similarity=0.211 Sum_probs=142.6
Q ss_pred ccccccccccccccccccccccCCCCCCccccccccccccCccccccccccccCccCCCCChhHhhhcCcceEEEecCCc
Q 022110 33 SSGVSIVPEIYSQNISSCLCKDHGALPWTRGSTMTLRSSLAPKSLLYLNEKRFATAQPKAPAQARQMQGALKVSISSPGF 112 (302)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~g~ 112 (302)
+..+.|..|.. +++.++.+|. +.+.-...|+...+-.+|+++ ...+.++..+-|
T Consensus 182 H~~l~~~de~k---ays~l~e~~f------vhl~~~~~t~~~~flp~m~~k--------------~K~~~vR~~~vs--- 235 (379)
T KOG4599|consen 182 HLCLNNSDEMK---AYSFLTESEF------VHLKCPSITNLLHFLPVMQEK--------------VKKGTVRWSFVS--- 235 (379)
T ss_pred HHHHhcChHHH---HHHHhhcccc------ccccCCCccchhhhccccchh--------------hccCceeEEEEe---
Confidence 56777887776 8999999988 778888888888888888855 122345666666
Q ss_pred ccccCCCCCCCCcccccccccchhhcHHHHHHHHhHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhh
Q 022110 113 IYEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAV 192 (302)
Q Consensus 113 I~epyvPp~~~~~~~~~~t~~g~k~~~~~l~~~~ks~~al~kir~p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lv 192 (302)
++|||.-. +.+.+.. -.++.+++|+..+|+- + .+|.++|..++.++..+. .+++=|
T Consensus 236 ~leP~~vv-----~~rc~d~----------~~~s~n~~aqitvRkh------~-~q~Lavydrfg~lm~g~E--~i~KDv 291 (379)
T KOG4599|consen 236 VLEPSRVV-----YVRCDDD----------NDKSGNFIAQITVRKH------T-RQCLAVYDRFGRLMFGSE--DIKKDV 291 (379)
T ss_pred ecccceeE-----EEEecCC----------cccccccceeeehHHH------H-HHHHHHHHHHHHHhccCc--ccccch
Confidence 56665431 1121110 0112455555555541 1 188999999999999988 677777
Q ss_pred cHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCC
Q 022110 193 TEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKT 272 (302)
Q Consensus 193 Te~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d 272 (302)
+| |..|...|+++..+| +++|++++..-++ + .+.+.++++-+.+.+....|+..|.+..|+.
T Consensus 292 ~e--yvvfe~hi~~~~g~w-r~h~kivp~wi~~-----k---------qk~~~tl~l~~lt~~~~~~~~~~~~~~~tek- 353 (379)
T KOG4599|consen 292 LE--YVVFENHIQNAYGRW-RLHKKIVPPWIPA-----K---------QKAYKTLMLFILTMEKSEAYPAGPKEAVTEK- 353 (379)
T ss_pred hH--HHHHHHhhhhhhhhh-hhcccccCccccc-----c---------ccchheEEeehhccCchhhcccCCccchhhh-
Confidence 77 999999999999998 4999987653333 2 3589999999999999999998887776653
Q ss_pred CeeeeeEEEEEEEeCCCCCCCeEEEEEeeC
Q 022110 273 KEVLVRDIWVFEKSLFHPGAYWRLCGRIKI 302 (302)
Q Consensus 273 ~~~dV~EyWVFeR~l~~~~~~WrL~gki~~ 302 (302)
..|.-++|..+......|+|++.+.+
T Consensus 354 ----~ke~~~~e~~~~~t~~~~~lk~~~kI 379 (379)
T KOG4599|consen 354 ----FKECILKENDVEITILKGILKPQLKI 379 (379)
T ss_pred ----hhhhhhhcccccccchhcccchhhcC
Confidence 34555588888888889999987754
No 8
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=95.84 E-value=0.26 Score=40.75 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCHHHHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcC
Q 022110 183 GDKTSLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDS 262 (302)
Q Consensus 183 gD~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~ 262 (302)
.+.+.|.+++++.|++......+.-...|. +|++. +.+++..|.... ..-.+++|.-.-.-....||
T Consensus 20 ~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~--y~~y~--------~~~~I~sv~~~~--~~~~ra~v~a~v~E~~~l~~- 86 (117)
T PF13355_consen 20 HDIDSLSEVLTGPLLSQWQDRAQWLKANGW--YWEYD--------HKLKIDSVEVFS--DSPNRATVEATVTESAQLYD- 86 (117)
T ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHHcCC--eEEEe--------eeeEEEEEEEcC--CCCCeEEEEEEEEEEEEEEe-
Confidence 456789999999999999988777666543 67762 122332222221 22344445544556667888
Q ss_pred CCceecC-CCCCeeeeeEEEEEEEeCCCCCCCeEEEE
Q 022110 263 KGVTVAG-DKTKEVLVRDIWVFEKSLFHPGAYWRLCG 298 (302)
Q Consensus 263 ~GrlV~G-~~d~~~dV~EyWVFeR~l~~~~~~WrL~g 298 (302)
.|++..+ +......|.+ .|.|. ++.|||+.
T Consensus 87 ~g~~~~~~s~~~~~~vrY--~L~r~----~~~WkI~d 117 (117)
T PF13355_consen 87 NGQPDNNPSYDSTLRVRY--ELVRQ----NGQWKITD 117 (117)
T ss_pred CCccccCCCCCCcEEEEE--EEEEc----CCEEEecC
Confidence 8998876 4444445554 34444 57799963
No 9
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=94.57 E-value=0.36 Score=38.99 Aligned_cols=93 Identities=15% Similarity=0.200 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcHHH--------------HHHHHHHHHHHh---ccCCceeeeeecccccceEEEE
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTEKM--------------YSALKNEIKQRE---SMWSSVNWELIEPIIKMRTLRA 230 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~--------------y~~l~~~Ik~R~---~~g~tv~W~~ve~le~~rvv~a 230 (302)
..++......+++.+||.+.|++.++|++ .+++...++++. ..+. .+.-..
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------------~~~~~i 72 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQ------------ERKESI 72 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SST------------T-EEEE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCC------------CceeEE
Confidence 34556666788899999999999999887 346666776652 2222 111122
Q ss_pred EEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEEEe
Q 022110 231 RLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCGRI 300 (302)
Q Consensus 231 rli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~gki 300 (302)
..+++ .++.|.+.|.+.... ....||++|.|. ++.|+|..|+
T Consensus 73 ~~i~i-----~g~~A~a~v~~~~~~-------------------~~~~d~~~L~K~----dg~WkIv~k~ 114 (116)
T PF12893_consen 73 LSIDI-----DGDVASAKVEYEFPG-------------------FWFVDYFTLVKT----DGGWKIVSKV 114 (116)
T ss_dssp EEEEE-----ETTEEEEEEEEEEET-------------------EEEEEEEEEEEE----TTEEEEEEEE
T ss_pred EEEEE-----ECCEEEEEEEEEECC-------------------CceEEEEEEEEE----CCEEEEEEEe
Confidence 22333 257777777775321 257999999997 7999999987
No 10
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=89.41 E-value=4.9 Score=30.97 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcHHHHH
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTEKMYS 198 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y~ 198 (302)
..+++-.....|+.+||.+....++++..-.
T Consensus 8 ~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~ 38 (111)
T PF12870_consen 8 TPEEVVKNFFDALKNGDYEKAYAYLSPESRE 38 (111)
T ss_dssp -HHHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence 3466677888999999999999999988774
No 11
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=74.57 E-value=31 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 170 VDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 170 k~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
++++....+|+.++|.+.+..+.+|++
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~ 28 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDF 28 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCE
Confidence 467888999999999999999998765
No 12
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=73.14 E-value=40 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhhcHH
Q 022110 170 VDLYKEINTLMANGDKTSLRKAVTEK 195 (302)
Q Consensus 170 k~iy~~I~eA~a~gD~~~Lr~lvTe~ 195 (302)
++++...++||+++|.+.+..+++++
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d 27 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDD 27 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCC
Confidence 46788999999999999999988754
No 13
>PF13211 DUF4019: Protein of unknown function (DUF4019)
Probab=63.07 E-value=80 Score=25.56 Aligned_cols=80 Identities=13% Similarity=0.166 Sum_probs=46.0
Q ss_pred HHHHhhcHHHHHHHHHHHHHHhccCCceeeeeecccccceEEEEEEeeeeccccCCcEEEEEEEEEeEEeeEEEcCCCce
Q 022110 187 SLRKAVTEKMYSALKNEIKQRESMWSSVNWELIEPIIKMRTLRARLIGVDRNDLNKVFVQLTLEFLAKQKFEAYDSKGVT 266 (302)
Q Consensus 187 ~Lr~lvTe~~y~~l~~~Ik~R~~~g~tv~W~~ve~le~~rvv~arli~i~~~~~~~~~~QVTVRF~s~Q~lavyD~~Grl 266 (302)
.+|.-+|++.+......+... -|. +..=..+...-. .......+..++.|.|.|+-.
T Consensus 25 ~fk~~~t~~~w~~~l~~~R~~--LG~---------v~~R~~~~~~~~--~~~pg~P~G~Yv~v~f~T~F~---------- 81 (105)
T PF13211_consen 25 FFKKAITEEQWVAQLRAARAP--LGA---------VVSRELVSRQRY--TSLPGAPDGEYVVVQFQTTFA---------- 81 (105)
T ss_pred HHhccCCHHHHHHHHHHHHHh--ccc---------cchhhheeeeee--cCCCCCCCceEEEEEEEeEeC----------
Confidence 467788888887777666433 332 110012222211 111112355688899988662
Q ss_pred ecCCCCCeeeeeEEEEEEEeCCCCCCCeEEEE
Q 022110 267 VAGDKTKEVLVRDIWVFEKSLFHPGAYWRLCG 298 (302)
Q Consensus 267 V~G~~d~~~dV~EyWVFeR~l~~~~~~WrL~g 298 (302)
. -..+.|-++|.+. .++.||+.|
T Consensus 82 --~----~~~~~Etvt~~~e---~dg~Wr~~G 104 (105)
T PF13211_consen 82 --N----KKQATETVTFRLE---EDGRWRVVG 104 (105)
T ss_pred --C----CCceEEEEEEEEc---CCCcEEeCC
Confidence 1 1238999998776 479999986
No 14
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=59.74 E-value=28 Score=25.18 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCHHHHHHhhcHH------------HHHHHHHHHHHH
Q 022110 174 KEINTLMANGDKTSLRKAVTEK------------MYSALKNEIKQR 207 (302)
Q Consensus 174 ~~I~eA~a~gD~~~Lr~lvTe~------------~y~~l~~~Ik~R 207 (302)
..|++|.+.||+..++.+.+.. +++.|+.+|...
T Consensus 5 vaiq~AiasGDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 5 VAIQQAIASGDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 5799999999999999888743 445556666544
No 15
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=43.93 E-value=46 Score=31.53 Aligned_cols=44 Identities=14% Similarity=0.063 Sum_probs=32.8
Q ss_pred HHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHHH
Q 022110 152 IAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKMY 197 (302)
Q Consensus 152 l~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y 197 (302)
.++|++ |.|.. ...+.+++-....+|+..||.+.|..|++|++-
T Consensus 159 r~~Lr~~~~~~~~--~~~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~ 204 (290)
T PRK09635 159 RRKINESRIAASV--EPAQHRVVTRAFIEACSNGDLDTLLEVLDPGVA 204 (290)
T ss_pred HHHHHhhCCCCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHhhhhhc
Confidence 344554 54542 234556788899999999999999999999983
No 16
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=40.78 E-value=28 Score=27.40 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcHHHH
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTEKMY 197 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~y 197 (302)
..+++.....+||++||.+.|.++++|++.
T Consensus 4 ~~~~~v~~~~~a~~~~D~~~~~~l~aed~~ 33 (122)
T cd00781 4 EMKAAVQRYVEAVNAGDPEGIVALFADDAT 33 (122)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHcCCCeE
Confidence 446677788999999999999999999876
No 17
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=40.74 E-value=48 Score=30.25 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHcCCH------HHHHHhhcHHHHHHHHHHHHHHhccCC
Q 022110 166 YTEAVDLYKEINTLMANGDK------TSLRKAVTEKMYSALKNEIKQRESMWS 212 (302)
Q Consensus 166 ~~~Ak~iy~~I~eA~a~gD~------~~Lr~lvTe~~y~~l~~~Ik~R~~~g~ 212 (302)
...|--+|..+|.--.+|+. ..|+.++||+|...|.+..+.|...|+
T Consensus 64 YaFa~yIfQQlN~W~~dG~~DY~~ni~~l~~YlTP~c~~~L~~d~~~r~~~ge 116 (199)
T PF11444_consen 64 YAFAFYIFQQLNRWPTDGEEDYPNNIHRLSAYLTPSCQAFLEQDYEQRRNNGE 116 (199)
T ss_pred HHHHHHHHHHHcccccCChHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHhccc
Confidence 34455677778777677764 489999999999999999998887775
No 18
>PRK10533 putative lipoprotein; Provisional
Probab=37.54 E-value=1.9e+02 Score=25.66 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=27.7
Q ss_pred HHHHH-HHHHHHHHcCCHHHHHHhhcHHHHHHHHHHHHHH
Q 022110 169 AVDLY-KEINTLMANGDKTSLRKAVTEKMYSALKNEIKQR 207 (302)
Q Consensus 169 Ak~iy-~~I~eA~a~gD~~~Lr~lvTe~~y~~l~~~Ik~R 207 (302)
|++.| -.|++ .+.+...||+++++.+|..|...-++.
T Consensus 45 aqqfyd~riq~--d~~~la~lRPyLSd~Ly~~L~~A~r~~ 82 (171)
T PRK10533 45 AQQFYDYRIQH--RSNDIAALRPYLSDKLATLLSDASRDN 82 (171)
T ss_pred HHHHHHHHhcc--chhhHHHhcccccHHHHHHHHHHhhcc
Confidence 44445 34444 667788999999999999999877654
No 19
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=36.47 E-value=1.1e+02 Score=26.69 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=30.9
Q ss_pred cccCCCCCCCCcccccccccchhhcHHHHHHHHhHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHcCCHHH
Q 022110 114 YEPYAPREAIPFWRRWFTRDGWRRTKDDIILELKSAYAIAKLRKSGYSKQKFYTEAVDLYKEINTLMANGDKTS 187 (302)
Q Consensus 114 ~epyvPp~~~~~~~~~~t~~g~k~~~~~l~~~~ks~~al~kir~p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~ 187 (302)
.+|+.|+.+.+.-+.++|++|++...+.|..-. ..|.+|-+.||+..
T Consensus 15 ~~~~~~~r~~~~~~~~lT~~G~~~L~~El~~L~---------------------------~~i~~Ar~~GDlsE 61 (160)
T PRK06342 15 AETLLPDRPISPHPNLVTEAGLKALEDQLAQAR---------------------------AAYEAAQAIEDVNE 61 (160)
T ss_pred ccccCCCCCCCCCCceECHHHHHHHHHHHHHHH---------------------------HHHHHHHHCCChhH
Confidence 456677655322356899999877765553311 25778888999777
No 20
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=34.99 E-value=59 Score=30.42 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=32.3
Q ss_pred HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 151 AIAKLRK--SGYSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 151 al~kir~--p~F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
|.++|++ |.+. .-.+...++-....+|+.+||.+.|..+++|++
T Consensus 155 Ar~~Lr~~~~~~~--~~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 155 ARKHVRAARPRFP--VSDEEGAELVEAFFAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHHhhCCCCC--CCchHHHHHHHHHHHHHHhCCHHHHHHHHhhCe
Confidence 3444555 4332 234456778889999999999999999999876
No 21
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=34.16 E-value=71 Score=29.81 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 167 TEAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 167 ~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
.+.+++-....+|+..||.+.|..+++|++
T Consensus 164 ~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv 193 (281)
T TIGR02957 164 EESRQLLERFVEAAQTGDLDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhce
Confidence 445677888999999999999999999987
No 22
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=33.65 E-value=1.1e+02 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 160 YSKQKFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 160 F~~~~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
+..........+.+..|.+|+.+||.+..+..+...+
T Consensus 87 ~~~~~~~~~~~~~h~~i~~ai~~~d~~~a~~~~~~h~ 123 (125)
T PF07729_consen 87 IRSKEDLERSLEEHREIIDAIRAGDPEAAREALRQHI 123 (125)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3366777788888999999999999999998887654
No 23
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=33.29 E-value=26 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHhhcHHHH
Q 022110 171 DLYKEINTLMANGDKTSLRKAVTEKMY 197 (302)
Q Consensus 171 ~iy~~I~eA~a~gD~~~Lr~lvTe~~y 197 (302)
++.....+||+++|.+.+..++++++.
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~ 28 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVL 28 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeE
Confidence 455667789999999999999998854
No 24
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=32.83 E-value=54 Score=30.76 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 165 FYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 165 F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
....-+++-....+||++||.+.|..+++|++
T Consensus 202 ~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv 233 (324)
T TIGR02960 202 PSPEEQDLLERYIAAFESYDLDALTALLHEDA 233 (324)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCe
Confidence 44456677888999999999999999999976
No 25
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=32.75 E-value=75 Score=20.98 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHhhcH
Q 022110 170 VDLYKEINTLMANGDKTSLRKAVTE 194 (302)
Q Consensus 170 k~iy~~I~eA~a~gD~~~Lr~lvTe 194 (302)
+.++..|-.|+.+||++.-.+|+.+
T Consensus 12 ~~L~~~ID~ALd~~D~e~F~~Ls~e 36 (37)
T PF08858_consen 12 EQLLELIDEALDNRDKEWFYELSEE 36 (37)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 5678899999999999987777643
No 26
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=29.01 E-value=3e+02 Score=22.04 Aligned_cols=29 Identities=7% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
.+++.+....+||++||.+.+-.+++...
T Consensus 2 ~p~~~~~~f~~aw~~~dy~~m~~~~~~~~ 30 (118)
T PF05223_consen 2 SPEETAEAFLEAWEKGDYAAMYELTSDPS 30 (118)
T ss_dssp ---HHHHHHHHHHHTT-HHHHHHTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHhhchhh
Confidence 45677888999999999999999999888
No 27
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=27.52 E-value=63 Score=25.21 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
+.++++....+||.++|.+.+..+.++++
T Consensus 5 ~i~~l~~~~~~a~~~~D~~~~~~~~~~Da 33 (128)
T TIGR02246 5 AIRALVATWEAAWAAGDAEGFADLFTPDG 33 (128)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhCCCc
Confidence 45778888999999999999999988874
No 28
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=25.05 E-value=66 Score=27.10 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHhhcHH
Q 022110 167 TEAVDLYKEINTLMANGDKTSLRKAVTEK 195 (302)
Q Consensus 167 ~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~ 195 (302)
++..+++...++|++.||.++..++|+|+
T Consensus 3 ~eI~~l~~~w~~ai~tgD~~~~~~ly~~d 31 (128)
T PF08332_consen 3 QEIAALFDRWNDAIQTGDPETYAKLYAPD 31 (128)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHEEEE
T ss_pred HHHHHHHHHHHHHHHcCCHHHHhhhcCCC
Confidence 35567899999999999999999999998
No 29
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=23.76 E-value=1e+02 Score=28.24 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHhhcHHHHHHHHHHHHHHhccCC
Q 022110 169 AVDLYKEINTLMANGD------KTSLRKAVTEKMYSALKNEIKQRESMWS 212 (302)
Q Consensus 169 Ak~iy~~I~eA~a~gD------~~~Lr~lvTe~~y~~l~~~Ik~R~~~g~ 212 (302)
|-.+|..+|.=-.+|. ...|+.++||+|...|.+..+.|...|+
T Consensus 68 a~yI~QQlNrW~~~Ge~dY~~ni~~l~~YlTP~c~~~L~~d~~~R~~~ge 117 (202)
T TIGR03746 68 AFYIFQQLNRWPKDGEQDYGANIFRLSPYLTPSCRAFLQQDYELRRSNGE 117 (202)
T ss_pred HHHHHHHHhhccccchHHHHHHHHhcccccCHHHHHHHHHHHHHHhhcch
Confidence 4455666665444444 4588999999999999999999976664
No 30
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=23.59 E-value=96 Score=29.43 Aligned_cols=33 Identities=18% Similarity=0.038 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHhhcHHH
Q 022110 164 KFYTEAVDLYKEINTLMANGDKTSLRKAVTEKM 196 (302)
Q Consensus 164 ~F~~~Ak~iy~~I~eA~a~gD~~~Lr~lvTe~~ 196 (302)
.+.+..+++.....+||.+||.+.|..+++|++
T Consensus 211 ~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv 243 (339)
T PRK08241 211 PDDPEERALLARYVAAFEAYDVDALVALLTEDA 243 (339)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCE
Confidence 567778888899999999999999999999987
No 31
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=22.59 E-value=64 Score=23.47 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=31.2
Q ss_pred EeEEeeEEEcCCCceecCCCCCeeeeeEEEEEEEeCCCC
Q 022110 252 LAKQKFEAYDSKGVTVAGDKTKEVLVRDIWVFEKSLFHP 290 (302)
Q Consensus 252 ~s~Q~lavyD~~GrlV~G~~d~~~dV~EyWVFeR~l~~~ 290 (302)
+++|++.+|-..|++-.|.. -.|..|+.+.+|.++.+
T Consensus 2 s~K~~F~~~hg~GNvR~Gp~--GvdLs~Fi~~~rGIdrp 38 (58)
T PF09322_consen 2 SSKVIFQIYHGEGNVRYGPT--GVDLSEFIVTSRGIDRP 38 (58)
T ss_pred CCceeEEEEEcCCceeECCC--ccchhHeeeeccccCch
Confidence 56788899999999999974 47899999999998743
No 32
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=21.03 E-value=1e+02 Score=27.75 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHhhcH
Q 022110 168 EAVDLYKEINTLMANGDKTSLRKAVTE 194 (302)
Q Consensus 168 ~Ak~iy~~I~eA~a~gD~~~Lr~lvTe 194 (302)
...+.+..+.++|.+||.+.|.++..+
T Consensus 171 ~~~~~~~~~~~~~~~gd~~~l~~~~~~ 197 (259)
T PF01963_consen 171 DGEKMLEQLIEAWKNGDLDALMELMKE 197 (259)
T ss_pred cchHHHHHHHHHHHccCHHHHHHHHHh
Confidence 335678899999999999999888744
No 33
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=20.96 E-value=58 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=16.6
Q ss_pred cEEEEEEEEEeEEee--EEEcCCCceecC
Q 022110 243 VFVQLTLEFLAKQKF--EAYDSKGVTVAG 269 (302)
Q Consensus 243 ~~~QVTVRF~s~Q~l--avyD~~GrlV~G 269 (302)
.-.-++++|.+-|+. .++|+.|+.|--
T Consensus 12 s~~~v~l~f~sgq~~D~~v~d~~g~~vwr 40 (82)
T PF12690_consen 12 SDEPVTLQFPSGQRYDFVVKDKEGKEVWR 40 (82)
T ss_dssp SSS-EEEEESSS--EEEEEE-TT--EEEE
T ss_pred CCCeEEEEeCCCCEEEEEEECCCCCEEEE
Confidence 456799999999985 788999987743
Done!