BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022111
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 160/299 (53%), Positives = 206/299 (68%), Gaps = 9/299 (3%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
++T HED +HD MD+YG RLAT SSD S+KI + N +A L+GH GPVWQVAWAH
Sbjct: 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAH 67
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
P +G+ILASCSYD +VIIW+E N W ++H H SSVNS+ WAPH+ GL LACGSSD
Sbjct: 68 PMYGNILASCSYDRKVIIWREEN-GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD 126
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPVQKLASCG 182
G IS+ T T +G W+ +I+ AH +G +VSWAPA+ PG+L+ + +++ AS G
Sbjct: 127 GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG 186
Query: 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241
CDN +K+WK +G WK + L+ HSDWVR VAWAP++GLP STIAS SQDG V IWT
Sbjct: 187 CDNLIKLWKEEEDGQWKEE--QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWT 244
Query: 242 CAK-EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 298
C W ++L F VW VSWS+T N+LAV+ +N VTLWKE+VDG+W +S V
Sbjct: 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 89/208 (42%), Gaps = 39/208 (18%)
Query: 115 LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
G LA SSD ++ +F +GG + H V V+WA M L
Sbjct: 24 YGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMYGNIL-------- 74
Query: 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP-NLGLPKSTIASASQ 233
ASC D V +W+ NG W+ A H V SV WAP + GL +A S
Sbjct: 75 ----ASCSYDRKVIIWREENGTWEKSHEHA--GHDSSVNSVCWAPHDYGL---ILACGSS 125
Query: 234 DGTVVIWTCAKEGEQWEGRVLKDFKT-PVWSVSWS---LTGNLL--------------AV 275
DG + + T EG QWE + + + T +VSW+ + G+L+ A
Sbjct: 126 DGAISLLTYTGEG-QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184
Query: 276 ADANN-VTLWKEAVDGEWQQVSVVEPQT 302
+N + LWKE DG+W++ +E +
Sbjct: 185 GGCDNLIKLWKEEEDGQWKEEQKLEAHS 212
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 4 QKIETGHEDTVHDVA----MDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR--GP 57
QK+E H D V DVA + +A+ S D + I +++S + H+
Sbjct: 206 QKLE-AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV 264
Query: 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNS 107
VW V+W+ +ILA D +V +WKE W N + SV++
Sbjct: 265 VWHVSWS--ITANILAVSGGDNKVTLWKESVDGQWVCISDVNKGQGSVSA 312
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
I H + +HD +D+YGKRLAT SSD +IKI + + + TL GH GPVW+V WAH
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
PKFG+ILASCSYDG+V+IWKE N W+Q H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
G +SV +G ID AH +GV S SWAPA G + +K + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
VK+WK + L+ HSDWVR VAW+P + L +S +AS SQD T +IWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
W+ +LK+ K P +W SWSL+GN+LA++ +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 247 bits (631), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
I H + +HD MD+YGKR+AT SSD +IKI + + + TL GH GPVW+V WAH
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
PKFG+ILASCSYDG+V+IWKE N W+Q H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVMIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
G +SV +G ID AH +GV S SWAPA G + +K + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
VK+WK + L+ HSDWVR VAW+P + L +S +AS SQD T +IWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYMASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
W+ +LK+ K P +W SWSL+GN+LA++ +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
I H + +HD +D+YGKRLAT SSD +IKI + + + TL GH GPVW+V WAH
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
PKFG+ILASCSYDG+V+IWKE N W+Q H +SVNS+ WAPHE G L SSD
Sbjct: 66 PKFGTILASCSYDGKVLIWKEENGR-WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
G +SV +G ID AH +GV S SWAPA G + +K + G DN
Sbjct: 125 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 182
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
VK+WK + L+ HSDWVR VAW+P + L +S +AS SQD T +IWT E
Sbjct: 183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 241
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
W+ +LK+ K P +W SWSL+GN+LA++ +N VTLWKE ++G+W+
Sbjct: 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 292
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 246 bits (629), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 179/291 (61%), Gaps = 7/291 (2%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
I H + +HD +D+YGKRLAT SSD +IKI + + + TL GH GPVW+V WAH
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
PKFG+ILASCSYDG+V+IWKE N W+Q H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
G +SV +G ID AH +GV S SWAPA G + +K + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
VK+WK + L+ HSDWVR VAW+P + L +S +AS SQD T +IWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYLASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
W+ +LK+ K P +W SWSL+GN+LA++ +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 175/291 (60%), Gaps = 7/291 (2%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
I H + +HD D+YGKR AT SSD +IKI + + + TL GH GPVW+V WAH
Sbjct: 4 IANAHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125
PKFG+ILASCSYDG+V IWKE N W+Q H +SVNS+ WAPHE G L SSD
Sbjct: 64 PKFGTILASCSYDGKVXIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSD 122
Query: 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185
G +SV +G ID AH +GV S SWAPA G + +K + G DN
Sbjct: 123 GKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADN 180
Query: 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
VK+WK + L+ HSDWVR VAW+P + L +S AS SQD T +IWT E
Sbjct: 181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRSYXASVSQDRTCIIWTQDNE 239
Query: 246 GEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 293
W+ +LK+ K P +W SWSL+GN+LA++ +N VTLWKE ++G+W+
Sbjct: 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWE 290
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 77/361 (21%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
Q ++GH+D VHDV DFYG+ +AT SSD IK+ L S + + + H + +
Sbjct: 2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 61
Query: 62 AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
WA P++G I+AS SYD V +W+E + W + T ND K S+ S+ +AP L
Sbjct: 62 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 121
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
GL LAC +DG + ++ A W T + H +SW P+ +P
Sbjct: 122 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP- 180
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
+KLA + + + +G K+ L H +RS++WAP++G
Sbjct: 181 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 227
Query: 225 KSTIASASQDGTVVIWTCAK-------------------------------EGEQWEGRV 253
IA+ +DG + I+ + + E
Sbjct: 228 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 287
Query: 254 LK------------DFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
L+ D VWSVSW+LTG +L+ A D V LWK E++ +SV+
Sbjct: 288 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 347
Query: 301 Q 301
Q
Sbjct: 348 Q 348
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 154/361 (42%), Gaps = 77/361 (21%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
Q ++GH+D VHDV DFYG+ +AT SSD IK+ L S + + + H + +
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62 AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
WA P++G I+AS SYD V +W+E + W + T ND K S+ S+ +AP L
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
GL LAC +DG + ++ A W T + H +SW P+ +P
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSP- 182
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
+KLA + + + +G K+ L H +RS++WAP++G
Sbjct: 183 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 229
Query: 225 KSTIASASQDGTVVIWTCAKE----------------------GEQWEGRV--------- 253
IA+ +DG + I+ ++ +GR
Sbjct: 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAE 289
Query: 254 ------------LKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
D VWSVSW+LTG +L+ A D V LWK E++ SV+
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCXSVITA 349
Query: 301 Q 301
Q
Sbjct: 350 Q 350
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 125 bits (313), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 155/361 (42%), Gaps = 77/361 (21%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQV 61
Q ++GH+D VHDV DFYG+ +AT SSD IK+ L S + + + H + +
Sbjct: 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAI 63
Query: 62 AWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHEL 115
WA P++G I+AS SYD V +W+E + W + T ND K S+ S+ +AP L
Sbjct: 64 DWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHL 123
Query: 116 GLSLACGSSDGNISVFTATADG---GWDTTRIDQA-------HPVGVTSVSWAPA-MAPG 164
GL LAC +DG + ++ A W T + H +SW P+ +P
Sbjct: 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP- 182
Query: 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224
+KLA + + + +G K+ L H +RS++WAP++G
Sbjct: 183 -----------EKLAVSALEQAIIYQRGKDG--KLHVAAKLPGHKSLIRSISWAPSIGRW 229
Query: 225 KSTIASASQDGTVVIWTCAK-------------------------------EGEQWEGRV 253
IA+ +DG + I+ + + E
Sbjct: 230 YQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE 289
Query: 254 LK------------DFKTPVWSVSWSLTGNLLAVA-DANNVTLWKEAVDGEWQQVSVVEP 300
L+ D VWSVSW+LTG +L+ A D V LWK E++ +SV+
Sbjct: 290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITA 349
Query: 301 Q 301
Q
Sbjct: 350 Q 350
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 123/280 (43%), Gaps = 43/280 (15%)
Query: 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
TGH +V VA G+ +A+AS D ++K L N QHL TL GH VW VA++
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVK---LWNRNGQHLQTLTGHSSSVWGVAFSPD- 355
Query: 68 FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
G +AS S D V +W Q T H SSV +A++P G ++A S D
Sbjct: 356 -GQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPD--GQTIASASDDKT 408
Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
+ + W+ G +S W A +P Q +AS D TV
Sbjct: 409 VKL--------WNRNGQLLQTLTGHSSSVWGVAFSP----------DDQTIASASDDKTV 450
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
K+W NG L HS VR VA++P+ TIASAS D TV +W + G+
Sbjct: 451 KLWN-RNG----QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWN--RNGQ 499
Query: 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKE 286
+ L + V V++S G +A A D V LW
Sbjct: 500 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 123/280 (43%), Gaps = 43/280 (15%)
Query: 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
TGH +V+ VA G+ +A+AS D ++K L N Q L TL GH VW VA++
Sbjct: 259 TGHSSSVNGVAFRPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVAFSPD- 314
Query: 68 FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
G +AS S D V +W Q+ T H SSV +A++P G ++A S D
Sbjct: 315 -GQTIASASDDKTVKLWNRNGQH----LQTLTGHSSSVWGVAFSPD--GQTIASASDDKT 367
Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
+ ++ + H V V+++P Q +AS D TV
Sbjct: 368 VKLWNRNG----QLLQTLTGHSSSVRGVAFSP--------------DGQTIASASDDKTV 409
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
K+W NG L HS V VA++P+ TIASAS D TV +W + G+
Sbjct: 410 KLWN-RNG----QLLQTLTGHSSSVWGVAFSPD----DQTIASASDDKTVKLWN--RNGQ 458
Query: 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKE 286
+ L + V V++S G +A A D V LW
Sbjct: 459 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 119/278 (42%), Gaps = 43/278 (15%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H +V VA G+ +A+AS D ++K L N Q L TL GH VW VA++ G
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVAFSPD--G 69
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
+AS S D V +W Q T H SSV +A++P G ++A S D +
Sbjct: 70 QTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPD--GQTIASASDDKTVK 123
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
+ W+ G +S W A +P Q +AS D TVK+
Sbjct: 124 L--------WNRNGQLLQTLTGHSSSVWGVAFSPDG----------QTIASASDDKTVKL 165
Query: 190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249
W NG L HS V VA++P+ TIASAS D TV +W + G+
Sbjct: 166 WN-RNG----QLLQTLTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWN--RNGQLL 214
Query: 250 EGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKE 286
+ L + V V++S G +A A D V LW
Sbjct: 215 Q--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 250
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 120/280 (42%), Gaps = 43/280 (15%)
Query: 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
TGH +V VA G+ +A+AS D ++K L N Q L TL GH V VA++
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVRGVAFSPD- 232
Query: 68 FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
G +AS S D V +W Q T H SSVN +A+ P G ++A S D
Sbjct: 233 -GQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVNGVAFRPD--GQTIASASDDKT 285
Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
+ + W+ G +S W A +P Q +AS D TV
Sbjct: 286 VKL--------WNRNGQLLQTLTGHSSSVWGVAFSPDG----------QTIASASDDKTV 327
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
K+W NG L HS V VA++P+ TIASAS D TV +W + G+
Sbjct: 328 KLWN-RNG----QHLQTLTGHSSSVWGVAFSPD----GQTIASASDDKTVKLWN--RNGQ 376
Query: 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVA-DANNVTLWKE 286
+ L + V V++S G +A A D V LW
Sbjct: 377 LLQ--TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 103/233 (44%), Gaps = 38/233 (16%)
Query: 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK 67
TGH +V VA G+ +A+AS D ++K L N Q L TL GH VW VA++ P
Sbjct: 382 TGHSSSVRGVAFSPDGQTIASASDDKTVK---LWNRNGQLLQTLTGHSSSVWGVAFS-PD 437
Query: 68 FGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127
+I AS S D V +W Q T H SSV +A++P G ++A S D
Sbjct: 438 DQTI-ASASDDKTVKLWNRNGQ----LLQTLTGHSSSVRGVAFSPD--GQTIASASDDKT 490
Query: 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
+ ++ + H V V+++P Q +AS D TV
Sbjct: 491 VKLWNRNGQ----LLQTLTGHSSSVRGVAFSP--------------DGQTIASASDDKTV 532
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
K+W NG L HS V VA++P+ TIASAS D TV +W
Sbjct: 533 KLWN-RNG----QLLQTLTGHSSSVWGVAFSPD----GQTIASASSDKTVKLW 576
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 126/289 (43%), Gaps = 36/289 (12%)
Query: 18 AMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK--GHRGPVWQVAWAHPKFGSILASC 75
+ DF LAT S+D IK++ + + L H+ + VAW P S+LA+
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPH-TSLLAAG 76
Query: 76 SYDGQVIIWKEGNQNDWTQAHTF----NDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
S+D V IW + D T H++ V +AW+ G LA S D ++ ++
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIW 134
Query: 132 TATADGG-WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW 190
G ++ + Q H V V W P+ A LAS D+TV++W
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--------------LASSSYDDTVRIW 180
Query: 191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE--- 247
K Y+ W +C L H V S + G+ + + S S D TV +W + E
Sbjct: 181 KDYDDDW--ECVAVLNGHEGTVWSSDFDKTEGVFR--LCSGSDDSTVRVWKYMGDDEDDQ 236
Query: 248 -QWEGR-VLKDF-KTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293
+W +L D K V++V+W G L+A A+ V E VDGEW+
Sbjct: 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK 284
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 105/252 (41%), Gaps = 28/252 (11%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH--LATLKGHRGPV 58
M I GHE+ V VA G LAT S D S+ I S ++ ++ L+ H V
Sbjct: 97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
V W HP ++LAS SYD V IWK+ + +DW N H+ +V S + E
Sbjct: 157 KHVIW-HPS-EALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTVWSSDFDKTEGVFR 213
Query: 119 LACGSSDGNISVFTATADGGWDTTR------IDQAHPVGVTSVSWAPAMAPGALVGLGLL 172
L GS D + V+ D D + H V +V+W GL
Sbjct: 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW-------GFNGL--- 263
Query: 173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS 232
+AS G D + V++ +G WK+ AL + V W G K+ +A+
Sbjct: 264 -----IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNG--KTILATGG 316
Query: 233 QDGTVVIWTCAK 244
DG V W+ K
Sbjct: 317 DDGIVNFWSLEK 328
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 115/257 (44%), Gaps = 37/257 (14%)
Query: 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND--HKSSV 105
+ +LK ++ +W ++ ILA+ S D ++ + +D+T ++ HK ++
Sbjct: 7 IKSLKLYKEKIWSFDFSQ----GILATGSTDRKIKL-VSVKYDDFTLIDVLDETAHKKAI 61
Query: 106 NSIAWAPHELGLSLACGSSDGNISVFTA--TADGGW--DTTRIDQAHPVGVTSVSWAPAM 161
S+AW PH LA GS D +S++ +AD + D I + H V V+W+
Sbjct: 62 RSVAWRPH--TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS--- 116
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
+ LA+C D +V +W+ + +C LQ HS V+ V W P+
Sbjct: 117 -----------NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165
Query: 222 GLPKSTIASASQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAV---AD 277
L +AS+S D TV IW + WE VL + VWS + T + + +D
Sbjct: 166 AL----LASSSYDDTVRIWK--DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 278 ANNVTLWKEAVDGEWQQ 294
+ V +WK D E Q
Sbjct: 220 DSTVRVWKYMGDDEDDQ 236
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH-----LATLKGHRGPVWQV 61
ET H+ + VA + LA S DS++ I SA + LA ++GH V V
Sbjct: 54 ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 62 AWAHPKFGSILASCSYDGQVIIWK-EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
AW++ G LA+CS D V IW+ + + ++ +H V + W P E LA
Sbjct: 114 AWSND--GYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE--ALLA 169
Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
S D + ++ D W+ + H V S + + V +L S
Sbjct: 170 SSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFDKT------------EGVFRLCS 216
Query: 181 CGCDNTVKVWKMYNGIWKMD-----CFPAL-QMHSDWVRSVAWAPNLGLPKSTIASASQD 234
D+TV+VWK Y G + D C L +H V +VAW N GL IAS D
Sbjct: 217 GSDDSTVRVWK-YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-GL----IASVGAD 270
Query: 235 GTVVIW 240
G + ++
Sbjct: 271 GVLAVY 276
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 31/189 (16%)
Query: 119 LACGSSDGNISVFTATADGGWDTTRID----QAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
LA GS+D I + + D D T ID AH + SV+W P +
Sbjct: 27 LATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPHTSL----------- 72
Query: 175 VQKLASCGCDNTVKVW---KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA 231
LA+ D+TV +W + + ++MD ++ H + V+ VAW+ + +A+
Sbjct: 73 ---LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND----GYYLATC 125
Query: 232 SQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVD 289
S+D +V IW + GE++E VL++ V V W + LLA + ++ V +WK+ D
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD-YD 184
Query: 290 GEWQQVSVV 298
+W+ V+V+
Sbjct: 185 DDWECVAVL 193
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 107/249 (42%), Gaps = 39/249 (15%)
Query: 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH 65
+ GH+ TV VA G LA+AS D++ I + + + TL+GH V VAWA
Sbjct: 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA- 114
Query: 66 PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSS 124
G++LA+CS D V +W+ ++++ N H V + W P EL LA S
Sbjct: 115 -PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL---LASASY 170
Query: 125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD 184
D + ++ D W + H S W+ A P Q+LASC D
Sbjct: 171 DDTVKLYREEED-DWVCCATLEGH----ESTVWSLAFDPSG----------QRLASCSDD 215
Query: 185 NTVKVWKMY-----NGI--------WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA 231
TV++W+ Y G+ WK C + HS + +AW G +A+A
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTG----ALATA 270
Query: 232 SQDGTVVIW 240
D + ++
Sbjct: 271 CGDDAIRVF 279
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 119/244 (48%), Gaps = 32/244 (13%)
Query: 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-WTQAHTFND-HKSSVNSIAWAPHEL 115
W +AW +P G++LASC D ++ IW G + D W ++ H+ +V +AW+P
Sbjct: 19 CWFLAW-NPA-GTLLASCGGDRRIRIW--GTEGDSWICKSVLSEGHQRTVRKVAWSP--C 72
Query: 116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175
G LA S D ++ D T + + H V SV+WAP+ G L
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTL-EGHENEVKSVAWAPS---GNL--------- 119
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
LA+C D +V VW++ + +C L H+ V+ V W P+ L +ASAS D
Sbjct: 120 --LATCSRDKSVWVWEVDEED-EYECVSVLNSHTQDVKHVVWHPSQEL----LASASYDD 172
Query: 236 TVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSWSLTGNLLA-VADANNVTLWKEAVDGEWQ 293
TV ++ +E + W L+ ++ VWS+++ +G LA +D V +W++ + G Q
Sbjct: 173 TVKLYR--EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 230
Query: 294 QVSV 297
V+
Sbjct: 231 GVAC 234
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 74/186 (39%), Gaps = 36/186 (19%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
LA+AS D ++K+ ATL+GH VW +A+ G LASCS D V IW+
Sbjct: 165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF--DPSGQRLASCSDDRTVRIWR 222
Query: 86 E------------GNQNDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFT 132
+ G+ W T + H ++ IAW L+ ACG D I VF
Sbjct: 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG--DDAIRVFQ 280
Query: 133 ATADGGWD------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT 186
+ T + QAH V V+W P PG LASC D
Sbjct: 281 EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK-EPGL------------LASCSDDGE 327
Query: 187 VKVWKM 192
V WK
Sbjct: 328 VAFWKY 333
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 23/142 (16%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKI---------IGLSNSAS----QHLATLKG-H 54
GHE TV +A D G+RLA+ S D +++I G++ S S + + TL G H
Sbjct: 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251
Query: 55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ------AHTFNDHKSSVNSI 108
++ +AW + LA+ D + +++E +D Q AH H VN +
Sbjct: 252 SRTIYDIAWC--QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 109 AWAPHELGLSLACGSSDGNISV 130
AW P E GL +C S DG ++
Sbjct: 310 AWNPKEPGLLASC-SDDGEVAF 330
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 108 IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167
+AW P G LA D I ++ D + + + H V V+W+P
Sbjct: 22 LAWNP--AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG------ 73
Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227
LAS D T +WK +C L+ H + V+SVAWAP+ L
Sbjct: 74 --------NYLASASFDATTCIWKKNQD--DFECVTTLEGHENEVKSVAWAPSGNL---- 119
Query: 228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKE 286
+A+ S+D +V +W +E E VL V V W + LLA A ++ V L++E
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 287 AVDGEWQQVSVVE 299
D +W + +E
Sbjct: 180 EED-DWVCCATLE 191
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-------KGHRGPVWQVA 62
H T++D+A LATA D +I++ ++ T + H V VA
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 63 WAHPKFGSILASCSYDGQVIIWK 85
W +PK +LASCS DG+V WK
Sbjct: 311 W-NPKEPGLLASCSDDGEVAFWK 332
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 35/228 (15%)
Query: 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110
L GHR PV +V + HP F S++ S S D + +W + D+ + T H SV I++
Sbjct: 104 LSGHRSPVTRVIF-HPVF-SVMVSASEDATIKVW-DYETGDFER--TLKGHTDSVQDISF 158
Query: 111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170
G LA S+D I ++ G++ R H V+SVS P
Sbjct: 159 D--HSGKLLASCSADMTIKLWDFQ---GFECIRTMHGHDHNVSSVSIMPNG--------- 204
Query: 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230
+ S D T+K+W++ G C H +WVR V PN + IAS
Sbjct: 205 -----DHIVSASRDKTIKMWEVQTGY----CVKTFTGHREWVRMVR--PNQD--GTLIAS 251
Query: 231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA 278
S D TV +W A + + E L++ + V +SW+ + ++++A
Sbjct: 252 CSNDQTVRVWVVATKECKAE---LREHRHVVECISWAPESSYSSISEA 296
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 106/244 (43%), Gaps = 28/244 (11%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
++ GH D+V D++ D GK LA+ S+D +IK+ + + T+ GH V V+
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF--QGFECIRTMHGHDHNVSSVSI 200
Query: 64 AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123
P G + S S D + +W+ Q + TF H+ V + P++ G +A S
Sbjct: 201 M-PN-GDHIVSASRDKTIKMWE--VQTGYC-VKTFTGHREWVRMV--RPNQDGTLIASCS 253
Query: 124 SDGNISV-FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD------PVQ 176
+D + V AT + + + H V +SWAP + ++ + P
Sbjct: 254 NDQTVRVWVVATKECKAEL----REHRHVVECISWAPESSYSSISEATGSETKKSGKPGP 309
Query: 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT 236
L S D T+K+W + G+ C L H +WVR V + I S + D T
Sbjct: 310 FLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGGKF----ILSCADDKT 361
Query: 237 VVIW 240
+ +W
Sbjct: 362 LRVW 365
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS 263
AL H V V + P S + SAS+D T+ +W E +E R LK V
Sbjct: 103 ALSGHRSPVTRVIFHPVF----SVMVSASEDATIKVWD--YETGDFE-RTLKGHTDSVQD 155
Query: 264 VSWSLTGNLLAVADAN-NVTLW 284
+S+ +G LLA A+ + LW
Sbjct: 156 ISFDHSGKLLASCSADMTIKLW 177
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 101/251 (40%), Gaps = 35/251 (13%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
+P + GH +V + F + T + D I++ N + L L GH G VW
Sbjct: 111 VPQRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWA 167
Query: 61 VAWAHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
+ +AH G IL S S D V +W K+G H F H S+V + ++
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL--GLLDPVQ 176
+ GS D + V+ + + +P+ V P P VG+ G + V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENP-YFVGVLRGHMASVR 274
Query: 177 KLASCG-------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
++ G DNT+ VW + +M C L H+D + S + +
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWD----VAQMKCLYILSGHTDRIYSTIYDH----ERKRCI 326
Query: 230 SASQDGTVVIW 240
SAS D T+ IW
Sbjct: 327 SASMDTTIRIW 337
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44 ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
A H+ATL GH V + WA G LAS D V +W + W TF H+
Sbjct: 219 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
+V ++AW P + L+ G+SD +I ++ + G + +D AH V S+ W+P
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 332
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
+ G G N + +WK M L+ H+ V S+ +P+
Sbjct: 333 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 375
Query: 222 GLPKSTIASASQDGTVVIWTC 242
+T+ASA+ D T+ +W C
Sbjct: 376 ---GATVASAAADETLRLWRC 393
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44 ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
A H+ATL GH V + WA G LAS D V +W + W TF H+
Sbjct: 230 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 287
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
+V ++AW P + L+ G+SD +I ++ + G + +D AH V S+ W+P
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 343
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
+ G G N + +WK M L+ H+ V S+ +P+
Sbjct: 344 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 386
Query: 222 GLPKSTIASASQDGTVVIWTC 242
+T+ASA+ D T+ +W C
Sbjct: 387 ---GATVASAAADETLRLWRC 404
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 44 ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHK 102
A H+ATL GH V + WA G LAS D V +W + W TF H+
Sbjct: 139 AEHHVATLSGHSQEVCGLRWA--PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 103 SSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161
+V ++AW P + L+ G+SD +I ++ + G + +D AH V S+ W+P
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS--GACLSAVD-AHS-QVCSILWSPHY 252
Query: 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221
+ G G N + +WK M L+ H+ V S+ +P+
Sbjct: 253 KE-LISGHGF-----------AQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD- 295
Query: 222 GLPKSTIASASQDGTVVIWTC 242
+T+ASA+ D T+ +W C
Sbjct: 296 ---GATVASAAADETLRLWRC 313
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
+ ++I TGH +V + + + + + T SSDS++++ ++ + L TL H V
Sbjct: 163 LECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVN--TGEMLNTLIHHCEAVL- 217
Query: 61 VAWAHPKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL 119
H +F + ++ +CS D + +W + D T H+++VN + + +
Sbjct: 218 ----HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YI 269
Query: 120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA 179
S D I V+ + + R H G+ + + + +
Sbjct: 270 VSASGDRTIKVWNTST---CEFVRTLNGHKRGIACLQYRDRL----------------VV 310
Query: 180 SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239
S DNT+++W + G C L+ H + VR + + I S + DG + +
Sbjct: 311 SGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRF------DNKRIVSGAYDGKIKV 360
Query: 240 W 240
W
Sbjct: 361 W 361
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26 LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
L +AS D +I + ++ + +H GH V VAW H S+ S + D +
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 255
Query: 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
++IW N N +HT + H + VN +++ P+ + LA GS+D +++ WD
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 306
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
+ ++H + V W+P LAS G D + VW +
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 353
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
+ D P L H+ + +W PN I S S+D + +W A+
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 410
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
A+ I TGH V DVA + L + +D +I +N+ S+ T+ H V
Sbjct: 223 AKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
+++ +P ILA+ S D V +W N + H+F HK + + W+PH + LA
Sbjct: 283 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LA 338
Query: 121 CGSSDGNISVFTATADGGWDTTR-----------IDQAHPVGVTSVSWAPAMAPGALVGL 169
+D + V+ + G +T I H ++ SW P
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP---------- 388
Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIW 197
+ + S DN ++VW+M ++
Sbjct: 389 ---NEPWIICSVSEDNIMQVWQMAENVY 413
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26 LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
L +AS D +I + ++ + +H GH V VAW H S+ S + D +
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 257
Query: 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
++IW N N +HT + H + VN +++ P+ + LA GS+D +++ WD
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 308
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
+ ++H + V W+P LAS G D + VW +
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 355
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
+ D P L H+ + +W PN I S S+D + +W A+
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 412
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 30/210 (14%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPV 58
+ A+ I TGH V DVA + L + +D +I +N+ S+ T+ H V
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 282
Query: 59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
+++ +P ILA+ S D V +W N + H+F HK + + W+PH +
Sbjct: 283 NCLSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI- 338
Query: 119 LACGSSDGNISVFTATADGGWDTTR-----------IDQAHPVGVTSVSWAPAMAPGALV 167
LA +D + V+ + G +T I H ++ SW P
Sbjct: 339 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-------- 390
Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIW 197
+ + S DN ++VW+M ++
Sbjct: 391 -----NEPWIICSVSEDNIMQVWQMAENVY 415
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 99/251 (39%), Gaps = 35/251 (13%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
+P + GH +V + F + T + D I++ N + L L GH G VW
Sbjct: 111 VPQRTTLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINK--KFLLQLSGHDGGVWA 167
Query: 61 VAWAHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
+ +AH G IL S S D V +W K+G H F H S+V + ++
Sbjct: 168 LKYAH---GGILVSGSTDRTVRVWDIKKG-----CCTHVFEGHNSTVRCLDIVEYKNIKY 219
Query: 119 LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL--GLLDPVQ 176
+ GS D + V+ + + +P+ V P P VG+ G V+
Sbjct: 220 IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL----VFHTPEENP-YFVGVLRGHXASVR 274
Query: 177 KLASCG-------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229
++ G DNT+ VW + + C L H+D + S + +
Sbjct: 275 TVSGHGNIVVSGSYDNTLIVWD----VAQXKCLYILSGHTDRIYSTIYDH----ERKRCI 326
Query: 230 SASQDGTVVIW 240
SAS D T+ IW
Sbjct: 327 SASXDTTIRIW 337
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 26 LATASSDSSIKIIGLSNSASQHLAT-----LKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
L +AS D +I + ++ + +H GH V VAW H S+ S + D +
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAW-HLLHESLFGSVADDQK 259
Query: 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140
++IW N N +HT + H + VN +++ P+ + LA GS+D +++ WD
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI-LATGSADKTVAL--------WD 310
Query: 141 TTRID------QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194
+ ++H + V W+P LAS G D + VW +
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNE-------------TILASSGTDRRLHVWDLSK 357
Query: 195 GIWKM------DCFPALQM----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
+ D P L H+ + +W PN I S S+D + +W A+
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN---EPWIICSVSEDNIMQVWQMAE 414
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 30/210 (14%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPV 58
+ A+ I TGH V DVA + L + +D +I +N+ S+ T+ H V
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 284
Query: 59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118
+++ +P ILA+ S D V +W N + H+F HK + + W+PH +
Sbjct: 285 NCLSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI- 340
Query: 119 LACGSSDGNISVFTATADGGWDTTR-----------IDQAHPVGVTSVSWAPAMAPGALV 167
LA +D + V+ + G +T I H ++ SW P
Sbjct: 341 LASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP-------- 392
Query: 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIW 197
+ + S DN ++VW+M ++
Sbjct: 393 -----NEPWIICSVSEDNIMQVWQMAENVY 417
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 101/240 (42%), Gaps = 44/240 (18%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH TV M + KR+ + S D+++++ + H+ L GH V V +
Sbjct: 197 GHTSTVR--CMHLHEKRVVSGSRDATLRVWDIETGQCLHV--LMGHVAAVRCVQYD---- 248
Query: 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128
G + S +YD V +W + T HT H + V S+ + G+ + GS D +I
Sbjct: 249 GRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRVYSLQFD----GIHVVSGSLDTSI 301
Query: 129 SVFTATADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTV 187
V WD + H + G S++ G+ L D + L S D+TV
Sbjct: 302 RV--------WDVETGNCIHTLTGHQSLT----------SGMELKDNI--LVSGNADSTV 341
Query: 188 KVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
K+W + G C LQ + +V L K+ + ++S DGTV +W K GE
Sbjct: 342 KIWDIKTG----QCLQTLQGPNKHQSAVTC---LQFNKNFVITSSDDGTVKLWD-LKTGE 393
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 43/240 (17%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
+ + K+ GH+D V + F G R+ + S D+++K+ S + L TL GH G V
Sbjct: 108 LKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKV--WSAVTGKCLRTLVGHTGGV-- 162
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
W+ +I+ S S D + +W N HT H S+V + H +
Sbjct: 163 --WSSQMRDNIIISGSTDRTLKVW---NAETGECIHTLYGHTSTVRCM----HLHEKRVV 213
Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
GS D + V WD H + M A V D +++ S
Sbjct: 214 SGSRDATLRV--------WDIETGQCLHVL----------MGHVAAVRCVQYDG-RRVVS 254
Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
D VKVW C LQ H++ V S L + S S D ++ +W
Sbjct: 255 GAYDFMVKVWDPETET----CLHTLQGHTNRVYS------LQFDGIHVVSGSLDTSIRVW 304
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 34/186 (18%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ + L +K H V A++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQV--FKAETGEKLLEIKAHEDEVLCCAFSTDD-- 675
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
+A+CS D +V IW N HT+++H VN + L LA GSSD +
Sbjct: 676 RFIATCSVDKKVKIW---NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLK 732
Query: 130 VFTATADGGWDTTRIDQ-----AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD 184
+ WD + + H V ++P + LASC D
Sbjct: 733 L--------WDLNQKECRNTMFGHTNSVNHCRFSP--------------DDKLLASCSAD 770
Query: 185 NTVKVW 190
T+K+W
Sbjct: 771 GTLKLW 776
Score = 32.0 bits (71), Expect = 0.39, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG---SILASCSYDGQVI 82
LAT SSD +K+ L+ ++ T+ GH V H +F +LASCS DG +
Sbjct: 722 LATGSSDCFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDKLLASCSADGTLK 774
Query: 83 IWKEGNQND 91
+W + N+
Sbjct: 775 LWDATSANE 783
Score = 31.6 bits (70), Expect = 0.54, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
LA+ D +K+W + + +C + H++ V ++P+ L +AS S DGT+
Sbjct: 722 LATGSSDCFLKLWDLN----QKECRNTMFGHTNSVNHCRFSPDDKL----LASCSADGTL 773
Query: 238 VIWTCAKEGEQWEGRVLK----------DFKTPVWSVSWSLTGNLLAVADANNVTLW 284
+W E+ V + D + V SWS G + VA N + L+
Sbjct: 774 KLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLF 830
Score = 31.6 bits (70), Expect = 0.55, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
Q++ASCG D T++V+K G + ++ H D V A++ + IA+ S D
Sbjct: 634 QRIASCGADKTLQVFKAETG----EKLLEIKAHEDEVLCCAFSTD----DRFIATCSVDK 685
Query: 236 TVVIW 240
V IW
Sbjct: 686 KVKIW 690
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ + L +K H V A++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQV--FKAETGEKLLDIKAHEDEVLCCAFSSD--D 669
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
S +A+CS D +V IW HT+++H VN + L LA GS+D +
Sbjct: 670 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 726
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
++ +T H V ++P + LASC D T+++
Sbjct: 727 LWDLNQKECRNTMF---GHTNSVNHCRFSP--------------DDELLASCSADGTLRL 769
Query: 190 W 190
W
Sbjct: 770 W 770
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
Q++ASCG D T++V+K G +D ++ H D V A++ + S IA+ S D
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLD----IKAHEDEVLCCAFSSD----DSYIATCSADK 679
Query: 236 TVVIWTCA 243
V IW A
Sbjct: 680 KVKIWDSA 687
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 33/225 (14%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG---SILASCSYDGQVI 82
LAT S+D +K+ L+ ++ T+ GH V H +F +LASCS DG +
Sbjct: 716 LATGSNDFFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDELLASCSADGTLR 768
Query: 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG--SSDGNISVFTATADGGWD 140
+W + N+ + SS + P ++ + + C S+DG+ + A +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSED----PPEDVEVIVKCCSWSADGDKIIVAAK-----N 819
Query: 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-TVKVWKMYNGIWKM 199
+ H G+ + + + P LA V++W + + +
Sbjct: 820 KVLLFDIHTSGLLA---EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876
Query: 200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
DC + H WV V ++P+ S+ +AS D T+ +W K
Sbjct: 877 DC----RGHLSWVHGVMFSPD----GSSFLTASDDQTIRVWETKK 913
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
LA+ D +K+W + + +C + H++ V ++P+ L +AS S DGT+
Sbjct: 716 LATGSNDFFLKLWDLN----QKECRNTMFGHTNSVNHCRFSPDDEL----LASCSADGTL 767
Query: 238 VIWTCAKEGEQWEGRVLK----------DFKTPVWSVSWSLTGNLLAVADANNVTLW 284
+W E+ V + D + V SWS G+ + VA N V L+
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT 236
+L S D TVKVW + G + D H V S A + + + +S S D T
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERD----FTCHQGTVLSCAISSD----ATKFSSTSADKT 1108
Query: 237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLW 284
IW+ E LK V ++SL G LLA D N + +W
Sbjct: 1109 AKIWSFDLLSPLHE---LKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 24/181 (13%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H D V+ G+R+A+ +D ++++ + L +K H V A++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQV--FKAETGEKLLDIKAHEDEVLCCAFSSD--D 676
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
S +A+CS D +V IW HT+++H VN + L LA GS+D +
Sbjct: 677 SYIATCSADKKVKIWDSATGK---LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK 733
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
++ +T H V ++P + LASC D T+++
Sbjct: 734 LWDLNQKECRNTMF---GHTNSVNHCRFSP--------------DDELLASCSADGTLRL 776
Query: 190 W 190
W
Sbjct: 777 W 777
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235
Q++ASCG D T++V+K G +D ++ H D V A++ + S IA+ S D
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLD----IKAHEDEVLCCAFSSD----DSYIATCSADK 686
Query: 236 TVVIWTCA 243
V IW A
Sbjct: 687 KVKIWDSA 694
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 33/225 (14%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG---SILASCSYDGQVI 82
LAT S+D +K+ L+ ++ T+ GH V H +F +LASCS DG +
Sbjct: 723 LATGSNDFFLKLWDLNQKECRN--TMFGHTNSV-----NHCRFSPDDELLASCSADGTLR 775
Query: 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG--SSDGNISVFTATADGGWD 140
+W + N+ + SS + P ++ + + C S+DG+ + A +
Sbjct: 776 LWDVRSANERKSINVKRFFLSSED----PPEDVEVIVKCCSWSADGDKIIVAAK-----N 826
Query: 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN-TVKVWKMYNGIWKM 199
+ H G+ + + + P LA V++W + + +
Sbjct: 827 KVLLFDIHTSGLLA---EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 883
Query: 200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244
DC + H WV V ++P+ S+ +AS D T+ +W K
Sbjct: 884 DC----RGHLSWVHGVMFSPD----GSSFLTASDDQTIRVWETKK 920
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
LA+ D +K+W + + +C + H++ V ++P+ L +AS S DGT+
Sbjct: 723 LATGSNDFFLKLWDLN----QKECRNTMFGHTNSVNHCRFSPDDEL----LASCSADGTL 774
Query: 238 VIWTCAKEGEQWEGRVLK----------DFKTPVWSVSWSLTGNLLAVADANNVTLW 284
+W E+ V + D + V SWS G+ + VA N V L+
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 831
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 12/109 (11%)
Query: 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT 236
+L S D TVKVW + G + D H V S A + + + +S S D T
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERD----FTCHQGTVLSCAISSD----ATKFSSTSADKT 1115
Query: 237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLW 284
IW+ E LK V ++SL G LLA D N + +W
Sbjct: 1116 AKIWSFDLLSPLHE---LKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 107/274 (39%), Gaps = 59/274 (21%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH G V+ + W K + + S S DG++I+W N + H H V A
Sbjct: 61 TLQGHSGKVYSLDWTPEK--NWIVSASQDGRLIVW---NALTSQKTHAIKLHCPWVMECA 115
Query: 110 WAPHELGLSLACGSSDGNISVFT----ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
+AP+ G S+ACG D S+F A DG +R+ H +S + P
Sbjct: 116 FAPN--GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 166 LVGLGLLDPV-------QKLASCG----------------------------CDNTVKVW 190
+ G G V Q+++ G CD TV++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE 250
+ + + H + SV + P+ + S DGT ++ + G Q +
Sbjct: 234 DLRITSRAVRTYHG---HEGDINSVKFFPD----GQRFGTGSDDGTCRLFD-MRTGHQLQ 285
Query: 251 GRVLK----DFKTP-VWSVSWSLTGNLLAVADAN 279
+ D + P V SV++S++G LL +N
Sbjct: 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN 319
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
C LQ HS V S+ W P K+ I SASQDG +++W
Sbjct: 58 CCRTLQGHSGKVYSLDWTPE----KNWIVSASQDGRLIVW 93
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 103/278 (37%), Gaps = 72/278 (25%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND---------WTQAHTFN- 99
TLKGH V + W K + S S DG+VI+W N W A +
Sbjct: 59 TLKGHGNKVLCMDWCKDK--RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 100 ----------DHKSSVNSIAW-------------APHELGLSLACGSSDGNISVFTATAD 136
D+K SV + + A H LS AC ++ ++ + TA+ D
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-ACSFTNSDMQILTASGD 175
Query: 137 GG---WDTT-----RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVK 188
G WD + H V + AP+ V S GCD
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV------------SGGCDKKAM 223
Query: 189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248
VW M +G C A + H V SV + P+ AS S D T ++ + E
Sbjct: 224 VWDMRSG----QCVQAFETHESDVNSVRYYPS----GDAFASGSDDATCRLYDLRADREV 275
Query: 249 WEGRVLKDFKTPVW---SVSWSLTGNLLAVADANNVTL 283
+ ++ ++ SV +SL+G LL A N+ T+
Sbjct: 276 ----AIYSKESIIFGASSVDFSLSGRLL-FAGYNDYTI 308
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 85/208 (40%), Gaps = 30/208 (14%)
Query: 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
A+ I TGH V DVA + L + +D +I SN+ S+ + H V
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
+++ +P ILA+ S D V +W N + HTF HK + + W+PH + LA
Sbjct: 281 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LA 336
Query: 121 CGSSDGNISVFTAT-----------ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
+D ++V+ + DG + I H ++ SW P
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP---------- 386
Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIW 197
+ + S DN +++W+M I+
Sbjct: 387 ---NEPWVICSVSEDNIMQIWQMAENIY 411
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 31/205 (15%)
Query: 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW------KEGNQNDWTQAHTFNDHKSS 104
L+GH+ + ++W G +L S S D V +W KEG D F H +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAV 231
Query: 105 VNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163
V +AW H L SL + D + ++ ++ + + AH V +S+ P
Sbjct: 232 VEDVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--- 286
Query: 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223
+ LA+ D TV +W + N K+ F + H D + V W+P+
Sbjct: 287 SEFI----------LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH--- 330
Query: 224 PKSTIASASQDGTVVIWTCAKEGEQ 248
++ +AS+ D + +W +K GE+
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEE 355
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H+D V +++ G + + D S+K+ LS A L + H V VA A P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV--LKSYNAHSSEVNCVA-ACPGKD 194
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
+I SC DG++++W T+ F + S+ W P E + ACG GN+S
Sbjct: 195 TIFLSCGEDGRILLWDTRKPKPATRID-FCASDTIPTSVTWHP-EKDDTFACGDETGNVS 252
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
+ D+ + H +T ++++ +P LAS D TV V
Sbjct: 253 LVNIK---NPDSAQTSAVHSQNITGLAYSYHSSP-------------FLASISEDCTVAV 296
Query: 190 WKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219
+ F L H D+V VAW+P
Sbjct: 297 LDADFS----EVFRDLS-HRDFVTGVAWSP 321
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH ++ + W +L S S DG++IIW N + H S V + A
Sbjct: 50 TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
+AP G +ACG D S++ T +G +R H ++ +
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
G ++ L L + S CD + K+W + G+ C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
H + ++ + PN + A+ S D T ++ + ++ + +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
SVS+S +G LLA D N +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH ++ + W +L S S DG++IIW N + H S V + A
Sbjct: 50 TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
+AP G +ACG D S++ T +G +R H ++ +
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
G ++ L L + S CD + K+W + G+ C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
H + ++ + PN + A+ S D T ++ + ++ + +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
SVS+S +G LLA D N +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH ++ + W +L S S DG++IIW N + H S V + A
Sbjct: 61 TLRGHLAKIYAMHWGTDS--RLLVSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 115
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
+AP G +ACG D S++ T +G +R H ++ +
Sbjct: 116 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
G ++ L L + S CD + K+W + G+ C
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 229
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
H + ++ + PN + A+ S D T ++ + ++ + +
Sbjct: 230 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 284
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
SVS+S +G LLA D N +W
Sbjct: 285 TSVSFSKSGRLLLAGYDDFNCNVW 308
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH ++ + W +L S S DG++IIW N + H S V + A
Sbjct: 50 TLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
+AP G +ACG D S++ T +G +R H ++ +
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
G ++ L L + S CD + K+W + G+ C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
H + ++ + PN + A+ S D T ++ + ++ + +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
SVS+S +G LLA D N +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 99/264 (37%), Gaps = 45/264 (17%)
Query: 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109
TL+GH ++ + W +L S S DG++IIW N + H S V + A
Sbjct: 50 TLRGHLAKIYAMHWGTDS--RLLLSASQDGKLIIWDSYTTN---KVHAIPLRSSWVMTCA 104
Query: 110 WAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSVSW----------- 157
+AP G +ACG D S++ T +G +R H ++ +
Sbjct: 105 YAPS--GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 158 ----------------APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDC 201
G ++ L L + S CD + K+W + G+ C
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----C 218
Query: 202 FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPV 261
H + ++ + PN + A+ S D T ++ + ++ + +
Sbjct: 219 RQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFD-LRADQELMTYSHDNIICGI 273
Query: 262 WSVSWSLTGN-LLAVADANNVTLW 284
SVS+S +G LLA D N +W
Sbjct: 274 TSVSFSKSGRLLLAGYDDFNCNVW 297
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
A+ I TGH V DV+ + L + +D +I SN+ S+ ++ H V
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
+++ +P ILA+ S D V +W N + H+F HK + + W+PH + LA
Sbjct: 279 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETI-LA 334
Query: 121 CGSSDGNISVFTAT-----------ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
+D ++V+ + DG + I H ++ SW P
Sbjct: 335 SSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNP---------- 384
Query: 170 GLLDPVQKLASCGCDNTVKVWKMYNGIW 197
+ + S DN ++VW+M I+
Sbjct: 385 ---NEPWVICSVSEDNIMQVWQMAENIY 409
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK--EGNQNDWTQAHTFNDHKSSVN 106
TLKGH G V Q+A P+F ++ S S D +I+WK N H V+
Sbjct: 32 GTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 107 SIAWAPH-ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
+ + + LS GS DG + ++ T TTR H V SV+++
Sbjct: 91 DVVISSDGQFALS---GSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDN---- 140
Query: 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225
+++ S D T+K+W G+ K + HS+WV V ++PN P
Sbjct: 141 ----------RQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP- 186
Query: 226 STIASASQDGTVVIWTCA 243
I S D V +W A
Sbjct: 187 -IIVSCGWDKLVKVWNLA 203
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 198 KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
+M L+ H+ WV +A P I SAS+D T+++W ++
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRD 71
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK--EGNQNDWTQAHTFNDHKSSVN 106
TLKGH G V Q+A P+F ++ S S D +I+WK N H V+
Sbjct: 9 GTLKGHNGWVTQIA-TTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 107 SIAWAPH-ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165
+ + + LS GS DG + ++ T TTR H V SV+++
Sbjct: 68 DVVISSDGQFALS---GSWDGTLRLWDLTTG---TTTRRFVGHTKDVLSVAFSSDN---- 117
Query: 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225
+++ S D T+K+W G+ K + HS+WV V ++PN P
Sbjct: 118 ----------RQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNP- 163
Query: 226 STIASASQDGTVVIWTCA 243
I S D V +W A
Sbjct: 164 -IIVSCGWDKLVKVWNLA 180
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 198 KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245
+M L+ H+ WV +A P I SAS+D T+++W ++
Sbjct: 4 QMTLRGTLKGHNGWVTQIATTPQF---PDMILSASRDKTIIMWKLTRD 48
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW------KEGNQNDWTQAHTFNDHKSS 104
L+GH+ + ++W G +L S S D V +W KEG D F H +
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLL-SASDDHTVCLWDINAGPKEGKIVDAKA--IFTGHSAV 231
Query: 105 VNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163
V +AW H L SL + D + ++ ++ + + AH V +S+ P
Sbjct: 232 VEDVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPY--- 286
Query: 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223
+ LA+ D TV +W + N K+ F + H D + V W+P+
Sbjct: 287 SEFI----------LATGSADKTVALWDLRNLKLKLHTF---ESHKDEIFQVHWSPH--- 330
Query: 224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256
++ +AS+ D + +W +K GE+ +D
Sbjct: 331 NETILASSGTDRRLNVWDLSKIGEEQSAEDAED 363
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 17/170 (10%)
Query: 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKII--GLSNSASQHLATLKGHRGPVWQ 60
A+ I TGH V DVA + L + +D I SN+ S+ + H V
Sbjct: 221 AKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNC 280
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
+++ +P ILA+ S D V +W N + HTF HK + + W+PH + LA
Sbjct: 281 LSF-NPYSEFILATGSADKTVALWDLRNLK--LKLHTFESHKDEIFQVHWSPHNETI-LA 336
Query: 121 CGSSDGNISVFTAT-----------ADGGWDTTRIDQAHPVGVTSVSWAP 159
+D ++V+ + DG + I H ++ SW P
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNP 386
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQM--HSDWVRSVAWAPNLGLPKSTIASASQ 233
+++ S G DN ++VW + K +C L H+DWV V ++P+L P I S
Sbjct: 122 RQIVSGGRDNALRVWNV-----KGECMHTLSRGAHTDWVSCVRFSPSLDAP--VIVSGGW 174
Query: 234 DGTVVIWTCAKEGEQWEGRVLKDFK---TPVWSVSWSLTGNLLAVADANNVTLWKEAVDG 290
D V +W A GR++ D K V SV+ S G+L A +D + V + G
Sbjct: 175 DNLVKVWDLAT------GRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 291 E 291
E
Sbjct: 229 E 229
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 74/244 (30%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
+P +++E GH V DVA+ G +AS D S+++ L N Q+ GH V
Sbjct: 58 LPDRRLE-GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQY--KFLGHTKDVLS 114
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
VA+ S D + I+
Sbjct: 115 VAF------------SPDNRQIV------------------------------------- 125
Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
G D + V+ + +R AH V+ V ++P++ +V S
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSR--GAHTDWVSCVRFSPSLDAPVIV------------S 171
Query: 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
G DN VKVW + G D L+ H+++V SV +P+ S AS+ +DG +W
Sbjct: 172 GGWDNLVKVWDLATGRLVTD----LKGHTNYVTSVTVSPD----GSLCASSDKDGVARLW 223
Query: 241 TCAK 244
K
Sbjct: 224 DLTK 227
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 75/222 (33%), Gaps = 67/222 (30%)
Query: 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82
G+ + + SD I + L NS+ Q T K V + HP
Sbjct: 56 GRYMLSGGSDGVIVLYDLENSSRQSYYTCKA----VCSIGRDHPDV-------------- 97
Query: 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT 142
H+ SV ++ W PH+ G+ S D + V WDT
Sbjct: 98 ------------------HRYSVETVQWYPHDTGM-FTSSSFDKTLKV--------WDTN 130
Query: 143 RIDQAHPVGVTSVSWAPAMAP----GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK 198
+ A ++ M+P LV +G P +L CD +
Sbjct: 131 TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL----CD-----------LKS 175
Query: 199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
C LQ H + +V+W+P +A+AS D V +W
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDY---ILATASADSRVKLW 214
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 42/230 (18%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
+A + +++ L + + H+ L+GHR + V+W+ P++ ILA+ S D +V +W
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHI--LQGHRQEILAVSWS-PRYDYILATASADSRVKLWD 215
Query: 86 EGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI 144
+ N KS A H ++ C +SDG + + T D + R+
Sbjct: 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTD---NRMRL 271
Query: 145 DQAHPVGVTSVSWAPAMAPGALVGLGLL-----DPVQKLASCGCD---------NTVKVW 190
W + LV G + ++ SCGC +T+ V+
Sbjct: 272 ------------WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVY 319
Query: 191 KMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240
+Y+G + L+ H V + N + S S+D ++ W
Sbjct: 320 TVYSG----EQITMLKGHYKTVDCCVFQSNF----QELYSGSRDCNILAW 361
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW 139
QV ++ E + N W A TF+DH V + WAP + + C S D N V+ DG W
Sbjct: 34 QVELY-EQDGNGWKHARTFSDHDKIVTCVDWAPKSNRI-VTC-SQDRNAYVYEKRPDGTW 90
Query: 140 DTTRIDQAHPVGVTSVSWAP 159
T + T V W+P
Sbjct: 91 KQTLVLLRLNRAATFVRWSP 110
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 3/145 (2%)
Query: 15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILAS 74
++ A + T ++ + +++ + +H T H V V WA PK I+ +
Sbjct: 15 YEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA-PKSNRIV-T 72
Query: 75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134
CS D ++++ W Q + + W+P+E ++ G+ ++ F
Sbjct: 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE 132
Query: 135 ADGGWDTTRIDQAHPVGVTSVSWAP 159
D W + + + + S+ W P
Sbjct: 133 ND-WWVSKHLKRPLRSTILSLDWHP 156
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 70/185 (37%), Gaps = 44/185 (23%)
Query: 71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130
I+ S S D +I+WK T +D V H + SSDG ++
Sbjct: 397 IIVSASRDKSIILWK----------LTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFAL 446
Query: 131 FTATADGGWD------------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178
G WD +TR H V SV+++ LD Q +
Sbjct: 447 -----SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-------------LDNRQ-I 487
Query: 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238
S D T+K+W G K + H DWV V ++PN P TI SAS D TV
Sbjct: 488 VSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQP--TIVSASWDKTVK 544
Query: 239 IWTCA 243
+W +
Sbjct: 545 VWNLS 549
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 26 LATASSDSSIKIIGLSNSASQH---LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82
+ +AS D SI + L+ + L GH V V + G S S+DG++
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD--GQFALSGSWDGELR 455
Query: 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT 142
+W + F H V S+A++ + S D I ++ + + +
Sbjct: 456 LW---DLAAGVSTRRFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTIS 510
Query: 143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF 202
+ H V+ V ++P L P + S D TVKVW + N +
Sbjct: 511 EGGEGHRDWVSCVRFSP----------NTLQPT--IVSASWDKTVKVWNLSNCKLR---- 554
Query: 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248
L H+ +V +VA +P+ S AS +DG V++W A EG++
Sbjct: 555 STLAGHTGYVSTVAVSPD----GSLCASGGKDGVVLLWDLA-EGKK 595
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVA 62
AQ+ TGH V DV + G+ + S D +++ L+ S GH V VA
Sbjct: 422 AQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--RFVGHTKDVLSVA 479
Query: 63 WAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG 122
++ + S S D + +W + +T + H+ V+ + ++P+ L ++
Sbjct: 480 FSLDN--RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA 537
Query: 123 SSDGNISV 130
S D + V
Sbjct: 538 SWDKTVKV 545
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 37/184 (20%)
Query: 65 HPKFGSILASCSYDGQVIIWKEGNQNDWTQ-AHTFNDHKSSVNSIAWAPHELGLSLACGS 123
+PKF +++ S G ++ G + H + V IAW PH + +A GS
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV-IASGS 101
Query: 124 SDGNISVFTATADGGW-----DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178
D + V+ DGG + + H V V+W P L
Sbjct: 102 EDCTVMVW-EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------NVL 147
Query: 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238
S GCDN + VW + G + P +H D + SV W S+DG ++
Sbjct: 148 LSAGCDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDW--------------SRDGALI 191
Query: 239 IWTC 242
+C
Sbjct: 192 CTSC 195
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 38 IGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH- 96
+G + +++ + GH PV +AW P +++AS S D V++W+ +
Sbjct: 64 LGKTGRVDKNVPLVCGHTAPVLDIAWC-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE 122
Query: 97 ---TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT 153
T H V +AW P + L+ G N+ + G T HP +
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCD--NVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 154 SVSWA 158
SV W+
Sbjct: 181 SVDWS 185
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGH--------RGPVWQ 60
GH+ V+ VA +++ +A ++ IK+ + A + H P+ +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 61 VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120
A F AS +DG++ +W ++ +TF H+S+VN ++ +P+ G +A
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVW----NTNFQIRYTFKAHESNVNHLSISPN--GKYIA 229
Query: 121 CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180
G D + + WD ++ +P G+ + +P + +
Sbjct: 230 TGGKDKKLLI--------WDI--LNLTYP--------QREFDAGSTINQIAFNPKLQWVA 271
Query: 181 CGCDNTVKVWKM 192
G D VK++ +
Sbjct: 272 VGTDQGVKIFNL 283
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 205 LQMHSDWVRSV--AWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247
L+ HSDWV S+ ++ + S S+D TV+IW +E +
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ 61
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 172
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 173 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 218
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 219 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 271 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIWDVKTG-----MCLKTLPAHSDPVSAVHF--NRDGSLIVS 169
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 170 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 215
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 216 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 268 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 139
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 140 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 190
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 191 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 236
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 237 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 288
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 289 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 100
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 101 SNLLVSASDDKTLKIW 116
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 115
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 116 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 166
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 167 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 212
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 213 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 265 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 76
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 77 SNLLVSASDDKTLKIW 92
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 111
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 112 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 162
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 163 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 208
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 209 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 260
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 261 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 72
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 73 SNLLVSASDDKTLKIW 88
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 137
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 138 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 188
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 189 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 234
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 235 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 287 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 98
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 99 SNLLVSASDDKTLKIW 114
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 120
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 121 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 171
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 172 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 217
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 218 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 269
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 270 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 81
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 82 SNLLVSASDDKTLKIW 97
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 172
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 173 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 218
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 219 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 271 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 132
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 133 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 183
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 184 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 229
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 230 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 281
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 282 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSD-- 93
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 94 SNLLVSASDDKTLKIW 109
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 114
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 115 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 165
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 166 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 211
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 212 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 263
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 264 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 75
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 76 SNLLVSASDDKTLKIW 91
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V +A G +LA+ +D+ ++I +S + T H V VAW P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT--NHNAAVKAVAWC-PWQ 271
Query: 69 GSILASC--SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG 126
++LA+ + D Q+ W N + +T D S V S+ W+PH + G D
Sbjct: 272 SNLLATGGGTMDKQIHFW---NAATGARVNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDN 327
Query: 127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT 186
N+S+++ ++ G T ++D P T V ++ A++P + L++ D
Sbjct: 328 NLSIWSYSSSGL--TKQVDI--PAHDTRVLYS-ALSPDGRI----------LSTAASDEN 372
Query: 187 VKVWKMYNG 195
+K W++Y+G
Sbjct: 373 LKFWRVYDG 381
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 35/165 (21%)
Query: 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL 117
V V W+H GS L+ +G V I+ +Q T+ T H++ V ++W H
Sbjct: 137 VASVKWSHD--GSFLSVGLGNGLVDIYDVESQ---TKLRTMAGHQARVGCLSWNRH---- 187
Query: 118 SLACGSSDGNI---SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP 174
L+ GS G I V A G Q H V ++W GL
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIG-----TLQGHSSEVCGLAWRSD---------GL--- 230
Query: 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219
+LAS G DN V++W + I K H+ V++VAW P
Sbjct: 231 --QLASGGNDNVVQIWDARSSIPKF----TKTNHNAAVKAVAWCP 269
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 115
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 116 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 166
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 167 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 212
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 213 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 264
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 265 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 76
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 77 SNLLVSASDDKTLKIW 92
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 169
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 170 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 215
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 216 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 268 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA +S+D IKI G + + T+ GH+ + VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 116
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 117 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 167
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 168 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 213
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 214 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 265
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 266 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 77
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 78 SNLLVSASDDKTLKIW 93
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 121
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 122 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 172
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 173 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 218
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 219 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 270
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 271 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 82
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 83 SNLLVSASDDKTLKIW 98
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 36/240 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 169
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 170 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 215
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 216 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 100/240 (41%), Gaps = 36/240 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIWDVKTGK-----CLKTLPAHSDPVSAVHF--NRDGSLIVS 169
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 170 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 215
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DNT+K+W G C H + N + I S S+D V IW
Sbjct: 216 --DNTLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIW 267
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 29/218 (13%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
+ S D I++ + + + + H + +A HP +L S S D V +W
Sbjct: 70 IIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIA-VHPTKPYVL-SGSDDLTVKLWN 125
Query: 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145
+N+W TF H+ V +A+ P + + A G D + V++ T
Sbjct: 126 W--ENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
Q GV V + P L + + D T+K+W C L
Sbjct: 183 QER--GVNYVDYYP------------LPDKPYMITASDDLTIKIWDYQTK----SCVATL 224
Query: 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243
+ H V + P L + I S S+DGT+ IW +
Sbjct: 225 EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSS 258
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 29/218 (13%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
+ S D I++ + + + + H + +A HP +L S S D V +W
Sbjct: 70 IIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIA-VHPTKPYVL-SGSDDLTVKLWN 125
Query: 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145
+N+W TF H+ V +A+ P + + A G D + V++ T
Sbjct: 126 W--ENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
Q GV V + P L + + D T+K+W C L
Sbjct: 183 QER--GVNYVDYYP------------LPDKPYMITASDDLTIKIWDYQTK----SCVATL 224
Query: 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243
+ H V + P L + I S S+DGT+ IW +
Sbjct: 225 EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSS 258
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 29/218 (13%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
+ S D I++ + + + + H + +A HP +L S S D V +W
Sbjct: 70 IIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIA-VHPTKPYVL-SGSDDLTVKLWN 125
Query: 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145
+N+W TF H+ V +A+ P + + A G D + V++ T
Sbjct: 126 W--ENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
Q GV V + P L + + D T+K+W C L
Sbjct: 183 QER--GVNYVDYYP------------LPDKPYMITASDDLTIKIWDYQT----KSCVATL 224
Query: 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243
+ H V + P L + I S S+DGT+ IW +
Sbjct: 225 EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSS 258
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 118/289 (40%), Gaps = 44/289 (15%)
Query: 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW 63
+K +GH+ + DVA L +AS D ++KI + S+ + L TLKGH V+ +
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNF 118
Query: 64 AHPKFGSILASCSYDGQVIIW--KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121
+P+ +++ S S+D V IW K G T H V+++ + + G +
Sbjct: 119 -NPQ-SNLIVSGSFDESVRIWDVKTG-----MCLKTLPAHSDPVSAVHF--NRDGSLIVS 169
Query: 122 GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181
S DG ++ TA G T ID +P V+ V ++P G + L
Sbjct: 170 SSYDGLCRIWD-TASGQCLKTLIDDDNP-PVSFVKFSPN---GKYILAATL--------- 215
Query: 182 GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST-IASASQDGTVVIW 240
DN +K+W G C H + N + I S S+D V IW
Sbjct: 216 --DNDLKLWDYSKG----KCLKTYTGHKN--EKYCIFANFSVTGGKWIVSGSEDNMVYIW 267
Query: 241 TC-AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN---VTLWK 285
KE Q L+ V S + T N++A A N + LWK
Sbjct: 268 NLQTKEIVQ----KLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
LAS D +K+W Y+G ++ + H + VAW+ + L + SAS D T+
Sbjct: 41 LASSSADKLIKIWGAYDGKFE----KTISGHKLGISDVAWSSDSNL----LVSASDDKTL 92
Query: 238 VIWTCAKEGEQWEGRVLKDFK 258
IW + G+ LK K
Sbjct: 93 KIWDVS------SGKCLKTLK 107
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH V V G+ LA++S+D IKI G + + T+ GH+ + VAW+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISDVAWSSD-- 79
Query: 69 GSILASCSYDGQVIIW 84
++L S S D + IW
Sbjct: 80 SNLLVSASDDKTLKIW 95
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 29/218 (13%)
Query: 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85
+ S D I++ + + + + H + +A HP +L S S D V +W
Sbjct: 70 IIVGSDDFRIRVFNYN--TGEKVVDFEAHPDYIRSIA-VHPTKPYVL-SGSDDLTVKLWN 125
Query: 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145
+N+W TF H+ V +A+ P + + A G D + V++ T
Sbjct: 126 W--ENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
Q GV V + P L + + D T+K+W C L
Sbjct: 183 QER--GVNYVDYYP------------LPDKPYMITASDDLTIKIWDY----QTKSCVATL 224
Query: 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243
+ H V + P L + I S S+DGT+ IW +
Sbjct: 225 EGHMSNVSFAVFHPTLPI----IISGSEDGTLKIWNSS 258
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 37/184 (20%)
Query: 65 HPKFGSILASCSYDGQVIIWKEGNQNDWTQ-AHTFNDHKSSVNSIAWAPHELGLSLACGS 123
+PKF +++ S G ++ G + H + V IAW PH + +A GS
Sbjct: 43 NPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV-IASGS 101
Query: 124 SDGNISVFTATADGGW-----DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178
D + V+ DGG + + H V V+W P L
Sbjct: 102 EDCTVMVW-EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ-------------NVL 147
Query: 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238
S G DN + VW + G + P +H D + SV W S+DG ++
Sbjct: 148 LSAGXDNVILVWDVGTGAAVLTLGP--DVHPDTIYSVDW--------------SRDGALI 191
Query: 239 IWTC 242
+C
Sbjct: 192 CTSC 195
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 38 IGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH- 96
+G + +++ + GH PV +AW P +++AS S D V++W+ +
Sbjct: 64 LGKTGRVDKNVPLVXGHTAPVLDIAWX-PHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE 122
Query: 97 ---TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT 153
T H V +AW P + L+ G N+ + G T HP +
Sbjct: 123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGXD--NVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 154 SVSWA 158
SV W+
Sbjct: 181 SVDWS 185
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR----VLKDFK 258
P + H+ V +AW P+ + IAS S+D TV++W G R L+
Sbjct: 75 PLVXGHTAPVLDIAWXPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 259 TPVWSVSWSLTG-NLLAVADANNVTL 283
V V+W T N+L A +NV L
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGXDNVIL 157
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 28/211 (13%)
Query: 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG 69
H+D V V++ G + + S D IK+ L+ L++ + H V VA A P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV--LSSYRAHAAQVTCVA-ASPHKD 182
Query: 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129
S+ SCS D ++++W +Q + S+AW P + + G +G +S
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEV-FVFGDENGTVS 240
Query: 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
+ + ++ + H VT + ++P P LAS D ++ V
Sbjct: 241 LVDTKSTSCVLSSAV---HSQCVTGLVFSPHSVPF-------------LASLSEDCSLAV 284
Query: 190 W-KMYNGIWKMDCFPALQMHSDWVRSVAWAP 219
+ +++ Q H D+VR W+P
Sbjct: 285 LDSSLSELFRS------QAHRDFVRDATWSP 309
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 106/274 (38%), Gaps = 42/274 (15%)
Query: 14 VHDVAMDFYGKRLATASSDSSIKIIGL-SNSASQHLATLKGHRGPVWQVAWAHPKFGSIL 72
++ V D + L D+ I + L + S L TL GH+G V +++ ++
Sbjct: 62 LNSVCYDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD----GVV 117
Query: 73 ASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT 132
S S+D +WKEG+ QAH N+ W + S T
Sbjct: 118 ISGSWDKTAKVWKEGSLVYNLQAH---------NASVWDAKVVSFS--------ENKFLT 160
Query: 133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM 192
A+AD T ++ Q V + + + L ++D SC D +K+
Sbjct: 161 ASAD---KTIKLWQNDKV----IKTFSGIHNDVVRHLAVVDD-GHFISCSNDGLIKLVDX 212
Query: 193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR 252
+ G D + H +V + PN I S +D TV IW +KE + +
Sbjct: 213 HTG----DVLRTYEGHESFVYCIKLLPN-----GDIVSCGEDRTVRIW--SKENGSLK-Q 260
Query: 253 VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286
V+ +WSV G+++ + N V ++ +
Sbjct: 261 VITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQ 294
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
+A C + +V I+ E + N W Q H +H V I WAP + + CG +D N V+
Sbjct: 23 IAICPNNHEVHIY-EKSGNKWVQVHELKEHNGQVTGIDWAPDSNRI-VTCG-TDRNAYVW 79
Query: 132 TATADGGWDTTRIDQAHPVGVTSVSWAP 159
T W T + V WAP
Sbjct: 80 TLKGR-TWKPTLVILRINRAARCVRWAP 106
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 27/125 (21%)
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
+ H VT + WAP ++ +CG D VW + WK P L
Sbjct: 49 KEHNGQVTGIDWAP--------------DSNRIVTCGTDRNAYVWTLKGRTWK----PTL 90
Query: 206 QMH--SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS 263
+ + R V WAPN + A S + I +E + W V K K P+ S
Sbjct: 91 VILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWW---VCKHIKKPIRS 143
Query: 264 VSWSL 268
SL
Sbjct: 144 TVLSL 148
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 71/183 (38%), Gaps = 24/183 (13%)
Query: 14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA 73
+ D++ DF G+RL + +S + L + GH ++ H K +
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS---QRINACHLKQSRPMR 175
Query: 74 SCSY--DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
S + DG V+ ++ T + S V + ++P + GS D IS F
Sbjct: 176 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCF 234
Query: 132 TATADGGWDTTRIDQAHPV--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
+ G + D PV G+ ++SW + QK A+ G D T++V
Sbjct: 235 DGKS-GEFLKYIEDDQEPVQGGIFALSWLDS---------------QKFATVGADATIRV 278
Query: 190 WKM 192
W +
Sbjct: 279 WDV 281
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 64 AHPKFGSILASCSYD------GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL 117
A P + SI S +Y G+++++ ++ T F S +N+I+W P E G
Sbjct: 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGA 546
Query: 118 S--------LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
+ +A GS D NI +++ + AH GV ++ W P LV
Sbjct: 547 NEEEIEEDLVATGSLDTNIFIYSVKRP--MKIIKALNAHKDGVNNLLWE---TPSTLV-- 599
Query: 170 GLLDPVQKLASCGCDNTVKVWKM 192
S G D +K W +
Sbjct: 600 ----------SSGADACIKRWNV 612
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 34/200 (17%)
Query: 50 TLKGHRGPVWQVAW--AHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNS 107
T+ GPV ++W + ++ G V ++ G N ++NS
Sbjct: 98 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG-----NLTGQARAMNS 152
Query: 108 IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167
+ + P + GS D +++F + H V SV + P G+L
Sbjct: 153 VDFKPSR-PFRIISGSDDNTVAIFEGPP---FKFKSTFGEHTKFVHSVRYNP---DGSL- 204
Query: 168 GLGLLDPVQKLASCGCDNTVKVWK----MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223
AS G D T+ ++ G+++ D + HS V + W+P+
Sbjct: 205 ----------FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTWSPD--- 250
Query: 224 PKSTIASASQDGTVVIWTCA 243
+ IASAS D T+ IW A
Sbjct: 251 -GTKIASASADKTIKIWNVA 269
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
+A C + +V I+ E + N W Q H +H V + WAP + + CG +D N V+
Sbjct: 23 IAICPNNHEVHIY-EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCG-TDRNAYVW 79
Query: 132 TATADGGWDTTRIDQAHPVGVTSVSWAP 159
T W T + V WAP
Sbjct: 80 TLKGR-TWKPTLVILRINRAARCVRWAP 106
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 46/125 (36%), Gaps = 27/125 (21%)
Query: 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205
+ H VT V WAP ++ +CG D VW + WK P L
Sbjct: 49 KEHNGQVTGVDWAP--------------DSNRIVTCGTDRNAYVWTLKGRTWK----PTL 90
Query: 206 QMH--SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS 263
+ + R V WAPN + A S + I +E + W V K K P+ S
Sbjct: 91 VILRINRAARCVRWAPN----EKKFAVGSGSRVISICYFEQENDWW---VCKHIKKPIRS 143
Query: 264 VSWSL 268
SL
Sbjct: 144 TVLSL 148
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 4/135 (2%)
Query: 25 RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84
++A ++ + I S + + LK H G V V WA P I+ +C D +W
Sbjct: 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA-PDSNRIV-TCGTDRNAYVW 79
Query: 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI 144
+ W + + WAP+E ++ GS +I F D W I
Sbjct: 80 TLKGRT-WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND-WWVCKHI 137
Query: 145 DQAHPVGVTSVSWAP 159
+ V S+ W P
Sbjct: 138 KKPIRSTVLSLDWHP 152
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 24/183 (13%)
Query: 14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGH--RGPVWQVAWAHPKFGSI 71
+ D++ DF G+RL + +S + L + GH R + + P
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXT 178
Query: 72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131
+ DG V+ ++ T + S V + ++P + GS D IS F
Sbjct: 179 VGD---DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCF 234
Query: 132 TATADGGWDTTRIDQAHPV--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189
+ G + D PV G+ ++SW + QK A+ G D T++V
Sbjct: 235 DGKS-GEFLKYIEDDQEPVQGGIFALSWLDS---------------QKFATVGADATIRV 278
Query: 190 WKM 192
W +
Sbjct: 279 WDV 281
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 64 AHPKFGSILASCSY------DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL 117
A P + SI S +Y G+++++ ++ T F S +N+I+W P E G
Sbjct: 489 AKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGA 546
Query: 118 S--------LACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169
+ +A GS D NI +++ + AH GV ++ W P LV
Sbjct: 547 NEEEIEEDLVATGSLDTNIFIYSVKRP--XKIIKALNAHKDGVNNLLWE---TPSTLV-- 599
Query: 170 GLLDPVQKLASCGCDNTVKVWKM 192
S G D +K W +
Sbjct: 600 ----------SSGADACIKRWNV 612
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 25/206 (12%)
Query: 39 GLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF 98
G SN TL+GH G V +A + + ++L S S D +I WK T
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQ-PNLLLSASRDKTLISWK----------LTG 49
Query: 99 NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 158
+D K V ++ H + ++DG ++ WD T G T +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFV 104
Query: 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA 218
+ ++ + + + S D T+KVW + K C L H+DWV V
Sbjct: 105 GHKSD--VMSVDIDKKASMIISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVV 157
Query: 219 PNLGLPKS--TIASASQDGTVVIWTC 242
PN TI SA D V W
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNI 128
DG I
Sbjct: 217 DGEI 220
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 77/206 (37%), Gaps = 25/206 (12%)
Query: 39 GLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTF 98
G SN TL+GH G V +A + + ++L S S D +I WK T
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQ-PNLLLSASRDKTLISWK----------LTG 49
Query: 99 NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 158
+D K V ++ H + ++DG ++ WD T G T +
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-----SASWDKTLRLWDVATGETYQRFV 104
Query: 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWA 218
+ ++ + + + S D T+KVW + K C L H+DWV V
Sbjct: 105 GHKSD--VMSVDIDKKASMIISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVV 157
Query: 219 PNLGLPKS--TIASASQDGTVVIWTC 242
PN TI SA D V W
Sbjct: 158 PNEKADDDSVTIISAGNDKMVKAWNL 183
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNI 128
DG I
Sbjct: 217 DGEI 220
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA----------TLKGHRGP 57
TGH+D+V+ V G+ + + S D S+K+ L N+ ++ + T GH+
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA 111
V VA + S S D V+ W + + N H++SV S+A A
Sbjct: 313 VLSVATTQND--EYILSGSKDRGVLFWDKKSGNPLLM---LQGHRNSVISVAVA 361
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 37/141 (26%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----IDQAHPVGVTSVSWAP 159
+ S+ ++P G LA G+ D I + WD I Q H + S+ + P
Sbjct: 126 IRSVCFSPD--GKFLATGAEDRLIRI--------WDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219
+ KL S D TV++W + G C L + D V +VA +P
Sbjct: 176 SG--------------DKLVSGSGDRTVRIWDLRTG----QCSLTLSIE-DGVTTVAVSP 216
Query: 220 NLGLPKSTIASASQDGTVVIW 240
G IA+ S D V +W
Sbjct: 217 GDG---KYIAAGSLDRAVRVW 234
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNI 128
DG I
Sbjct: 217 DGEI 220
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS--TIASASQDG 235
+ S D T+KVW + K C L H+DWV V PN TI SA D
Sbjct: 122 IISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 236 TVVIWTC 242
V W
Sbjct: 177 MVKAWNL 183
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNI 128
DG I
Sbjct: 217 DGEI 220
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS--TIASASQDG 235
+ S D T+KVW + K C L H+DWV V PN TI SA D
Sbjct: 122 IISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 236 TVVIWTC 242
V W
Sbjct: 177 MVKAWNL 183
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHNDWVSQVRVVPNEK 155
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 156 ADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 210
Query: 125 DGNI 128
DG I
Sbjct: 211 DGEI 214
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS--TIASASQDG 235
+ S D T+KVW + K C L H+DWV V PN TI SA D
Sbjct: 116 IISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 236 TVVIWTC 242
V W
Sbjct: 171 MVKAWNL 177
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF 68
GH+ V V +D + + S D +IK+ + Q LATL GH V QV +
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK---GQCLATLLGHNDWVSQVRVVPNEK 161
Query: 69 GS----ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS 124
+ S D V W N N + F H S++N++ +P G +A
Sbjct: 162 ADDDSVTIISAGNDKXVKAW---NLNQFQIEADFIGHNSNINTLTASPD--GTLIASAGK 216
Query: 125 DGNISV 130
DG I +
Sbjct: 217 DGEIXL 222
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS--TIASASQDG 235
+ S D T+KVW + K C L H+DWV V PN TI SA D
Sbjct: 122 IISGSRDKTIKVWTI-----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 236 TVVIWTC 242
V W
Sbjct: 177 XVKAWNL 183
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 119 LACGSSDGNISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK 177
G+++G+I V D ++ R IDQAH +T + + P+ +
Sbjct: 109 FILGTTEGDIKVL----DSNFNLQREIDQAHVSEITKLKFFPSG--------------EA 150
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
L S D +K+W + +G L H V +A + SAS DGT+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPR----TLIGHRATVTDIAIIDR----GRNVLSASLDGTI 202
Query: 238 VIWTCA 243
+W C
Sbjct: 203 RLWECG 208
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 27/126 (21%)
Query: 119 LACGSSDGNISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK 177
G+++G+I V D ++ R IDQAH +T + + P+ +
Sbjct: 112 FILGTTEGDIKVL----DSNFNLQREIDQAHVSEITKLKFFPSG--------------EA 153
Query: 178 LASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237
L S D +K+W + +G L H V +A + SAS DGT+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPR----TLIGHRATVTDIAIIDR----GRNVLSASLDGTI 205
Query: 238 VIWTCA 243
+W C
Sbjct: 206 RLWECG 211
>pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant)
Bound To A Dsdna, In Edition Mode
Length = 793
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLL 273
AW GL + +A S + V + KE E ++ + PVW+VS S TGNL+
Sbjct: 320 AWETGKGLER--VAKYSMEDAKVTFELGKEFFPMEAQLARLVGQPVWAVSRSSTGNLV 375
>pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLU|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLV|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLW|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLX|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLY|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FLZ|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM0|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
pdb|4FM1|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A
Dsdna, In Edition Mode
Length = 793
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLL 273
AW GL + +A S + V + KE E ++ + PVW VS S TGNL+
Sbjct: 320 AWETGKGLER--VAKYSMEDAKVTFELGKEFFPMEAQLARLVGQPVWDVSRSSTGNLV 375
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 78/206 (37%), Gaps = 45/206 (21%)
Query: 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110
L GH GP+ + + +L S S DG + IW GN N + F H S+ S +W
Sbjct: 243 LIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGN---SQNCFYGHSQSIVSASW 297
Query: 111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170
G+ V + + DG + Q + ++ V P A G + G
Sbjct: 298 V--------------GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA-GRISQDG 342
Query: 171 LLDPVQKLASCGCDNTVKVWKM-------------YNGIWKMDCFPALQMH-----SDWV 212
QK A D V V+ + +GI P + +D++
Sbjct: 343 -----QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI 397
Query: 213 RSVAWAPNLGLPKSTIASASQDGTVV 238
++W N K ++A + Q+G+VV
Sbjct: 398 FDLSW--NCAGNKISVAYSLQEGSVV 421
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ 60
M A K+ TGHE + V + G L + S DSS + N + L TL GH G +W
Sbjct: 23 MKAIKL-TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWS 79
Query: 61 V 61
+
Sbjct: 80 I 80
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84
L GH P+ QV + K G +L SCS D +W
Sbjct: 28 LTGHERPLTQVKYN--KEGDLLFSCSKDSSASVW 59
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 25 RLATAS---SDSSIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQ 80
R+ATA+ +D SI I L N A+ L TL +GH+ + + W H + +L S D
Sbjct: 229 RVATATGSDNDPSILIWDLRN-ANTPLQTLNQGHQKGILSLDWCH-QDEHLLLSSGRDNT 286
Query: 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT 132
V++W N Q F + +AP L AC S D I V T
Sbjct: 287 VLLW---NPESAEQLSQFPARGNWCFKTKFAPEAPDL-FACASFDNKIEVQT 334
>pdb|1RI6|A Chain A, Structure Of A Putative Isomerase From E. Coli
Length = 343
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC--GCD 184
I +FT + DG + P VT+V A P +V P ++ A C +
Sbjct: 152 RICLFTVSDDG-----HLVAQDPAEVTTVEGA---GPRHMV----FHPNEQYAYCVNELN 199
Query: 185 NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS--------------TIAS 230
++V VW++ + ++C L M + WA ++ + T+ S
Sbjct: 200 SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFS 259
Query: 231 ASQDGTVVIWTCAKEGEQ 248
S+DG+V+ +KEG Q
Sbjct: 260 VSEDGSVL----SKEGFQ 273
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP 260
F Q H D + SVAW N T+ + S D V +W +W L
Sbjct: 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW-------KWRDERL------ 70
Query: 261 VWSVSWSLTGNLLAVADAN 279
+ WSL G+ L V +
Sbjct: 71 --DLQWSLEGHQLGVVSVD 87
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|B Chain B, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|C Chain C, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|D Chain D, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|E Chain E, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|F Chain F, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|G Chain G, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|H Chain H, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|I Chain I, Sulfates Bound In The Vestibule Of Achbp
pdb|3GUA|J Chain J, Sulfates Bound In The Vestibule Of Achbp
Length = 217
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 71 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 120
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 121 DGSVMFI----PAQRL-SFMCDPT 139
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|B Chain B, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|C Chain C, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|D Chain D, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PGZ|E Chain E, Crystal Structure Of Cocaine Bound To An Ach-binding
Protein
pdb|2PH9|A Chain A, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|B Chain B, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|C Chain C, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|D Chain D, Galanthamine Bound To An Ach-Binding Protein
pdb|2PH9|E Chain E, Galanthamine Bound To An Ach-Binding Protein
pdb|4DBM|A Chain A, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|B Chain B, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|C Chain C, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|D Chain D, Aplysia Californica-Achbp In Complex With Triazole 18
pdb|4DBM|E Chain E, Aplysia Californica-Achbp In Complex With Triazole 18
Length = 230
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 71 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 120
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 121 DGSVMFI----PAQRL-SFMCDPT 139
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WN9|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With 4-0h-
Dmxba
pdb|2WNJ|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WNJ|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With Dmxba
pdb|2WZY|A Chain A, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|B Chain B, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|C Chain C, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|D Chain D, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|E Chain E, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|F Chain F, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|G Chain G, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|H Chain H, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|I Chain I, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2WZY|J Chain J, Crystal Structure Of A-Achbp In Complex With 13-Desmethyl
Spirolide C
pdb|2X00|A Chain A, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|B Chain B, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|C Chain C, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|2X00|E Chain E, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
pdb|3PEO|A Chain A, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|B Chain B, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|C Chain C, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|D Chain D, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|E Chain E, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|F Chain F, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|G Chain G, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|H Chain H, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|I Chain I, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
pdb|3PEO|J Chain J, Crystal Structure Of Acetylcholine Binding Protein
Complexed With Metocurine
Length = 228
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 71 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 120
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 121 DGSVMFI----PAQRL-SFMCDPT 139
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|B Chain B, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|C Chain C, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|D Chain D, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYN|E Chain E, Crystal Structure Of Apo Achbp From Aplysia Californica
pdb|2BYQ|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYQ|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Epibatidine
pdb|2BYR|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYR|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Methyllycaconitine
pdb|2BYS|A Chain A, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|B Chain B, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|C Chain C, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|D Chain D, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|E Chain E, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|F Chain F, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|G Chain G, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|H Chain H, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|I Chain I, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|2BYS|J Chain J, Crystal Structure Of Achbp From Aplysia Californica In
Complex With Lobeline
pdb|3C79|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C79|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With The Neonicotinoid Imidacloprid
pdb|3C84|A Chain A, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|B Chain B, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|C Chain C, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|D Chain D, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|3C84|E Chain E, Crystal Structure Of A Complex Of Achbp From Aplysia
Californica And The Neonicotinoid Thiacloprid
pdb|2WNC|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNC|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Tropisetron
pdb|2WNL|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|B Chain B, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|C Chain C, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|D Chain D, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|E Chain E, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|F Chain F, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|G Chain G, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|H Chain H, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|I Chain I, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
pdb|2WNL|J Chain J, Crystal Structure Of Aplysia Achbp In Complex With
Anabaseine
Length = 227
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 70 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 119
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 120 DGSVMFI----PAQRL-SFMCDPT 138
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|B Chain B, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|C Chain C, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|D Chain D, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|E Chain E, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|F Chain F, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|G Chain G, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|H Chain H, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|I Chain I, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
pdb|3PMZ|J Chain J, Crystal Structure Of The Complex Of Acetylcholine Binding
Protein And D-Tubocurarine
Length = 227
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 70 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 119
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 120 DGSVMFI----PAQRL-SFMCDPT 138
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
pdb|2BYP|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Alpha-Conotoxin Imi
Length = 214
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 68 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 117
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 118 DGSVMFI----PAQRL-SFMCDPT 136
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A
Length = 227
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 70 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 119
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 120 DGSVMFI----PAQRL-SFMCDPT 138
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 34/209 (16%)
Query: 79 GQVIIW---KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA 135
G V +W GN++ +Q N + + S P G +L G +S++ A
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPD--GCTLIVGGEASTLSIWDLAA 128
Query: 136 DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG 195
T RI +A +A A++P + V SC D + VW ++N
Sbjct: 129 P----TPRI-KAELTSSAPACYALAISPDSKVCF----------SCCSDGNIAVWDLHNQ 173
Query: 196 IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255
Q H+D + ++ + + + D TV W +EG Q +
Sbjct: 174 TLVRQ----FQGHTDGASCI----DISNDGTKLWTGGLDNTVRSWD-LREGRQLQQH--- 221
Query: 256 DFKTPVWSVSWSLTGNLLAVA-DANNVTL 283
DF + ++S+ + TG LAV +++NV +
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR7|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With Hepes
pdb|2BR8|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|B Chain B, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|C Chain C, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|D Chain D, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2BR8|E Chain E, Crystal Structure Of Acetylcholine-Binding Protein (Achbp)
From Aplysia Californica In Complex With An Alpha-
Conotoxin Pnia Variant
pdb|2C9T|A Chain A, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|B Chain B, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|C Chain C, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|D Chain D, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|E Chain E, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|F Chain F, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|G Chain G, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|H Chain H, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|I Chain I, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2C9T|J Chain J, Crystal Structure Of Acetylcholine Binding Protein (Achbp)
From Aplysia Californica In Complex With Alpha-Conotoxin
Imi
pdb|2UZ6|A Chain A, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|B Chain B, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|C Chain C, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|D Chain D, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|E Chain E, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|F Chain F, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|G Chain G, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|H Chain H, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|I Chain I, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2UZ6|J Chain J, Achbp-targeted A-conotoxin Correlates Distinct Binding
Orientations With Nachr Subtype Selectivity.
pdb|2W8F|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|F Chain F, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|G Chain G, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|H Chain H, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|I Chain I, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8F|J Chain J, Aplysia Californica Achbp Bound To In Silico Compound 31
pdb|2W8G|A Chain A, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|B Chain B, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|C Chain C, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|D Chain D, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2W8G|E Chain E, Aplysia Californica Achbp Bound To In Silico Compound 35
pdb|2XYS|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYS|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With Strychnine
pdb|2XYT|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|B Chain B, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|C Chain C, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|D Chain D, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|E Chain E, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|F Chain F, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|G Chain G, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|H Chain H, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|I Chain I, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2XYT|J Chain J, Crystal Structure Of Aplysia Californica Achbp In Complex
With D-Tubocurarine
pdb|2Y7Y|A Chain A, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|B Chain B, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|C Chain C, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|D Chain D, Aplysia Californica Achbp In Apo State
pdb|2Y7Y|E Chain E, Aplysia Californica Achbp In Apo State
pdb|2Y54|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y54|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine- Binding Protein: A Structural And
Thermodynamic Analysis - (Fragment 1)
pdb|2Y56|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y56|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 3)
pdb|2Y57|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y57|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 4)
pdb|2Y58|A Chain A, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|B Chain B, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|C Chain C, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|D Chain D, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|2Y58|E Chain E, Fragment Growing Induces Conformational Changes In
Acetylcholine-Binding Protein: A Structural And
Thermodynamic Analysis - (Compound 6)
pdb|4AFO|A Chain A, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|B Chain B, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|C Chain C, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|D Chain D, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFO|E Chain E, Aplysia Californica Achbp In Complex With Cytisine
pdb|4AFT|A Chain A, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|B Chain B, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|C Chain C, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|D Chain D, Aplysia Californica Achbp In Complex With Varenicline
pdb|4AFT|E Chain E, Aplysia Californica Achbp In Complex With Varenicline
Length = 217
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 60 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 109
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 110 DGSVMFI----PAQRL-SFMCDPT 128
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNT|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNU|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|B Chain B, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|C Chain C, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|D Chain D, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|E Chain E, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|F Chain F, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|G Chain G, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|H Chain H, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|I Chain I, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
pdb|2XNV|J Chain J, Acetylcholine Binding Protein (Achbp) As Template For
Hierarchical In Silico Screening Procedures To Identify
Structurally Novel Ligands For The Nicotinic Receptors
Length = 236
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Query: 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--DTTRIDQAHPVGVTSVSWAPAMA 162
+NS+ W P+E GNI+ F +A W D T PV V S A
Sbjct: 79 LNSLMWDPNEY----------GNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTH 128
Query: 163 PGALVGLGLLDPVQKLASCGCDNT 186
G+++ + P Q+L S CD T
Sbjct: 129 DGSVMFI----PAQRL-SFMCDPT 147
>pdb|3RXZ|A Chain A, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|B Chain B, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|C Chain C, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
pdb|3RXZ|D Chain D, Crystal Structure Of Putative Polysaccharide Deacetylase
From Mycobacterium Smegmatis
Length = 300
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 15 HDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLK--GHRGPVWQVAWAHPK---- 67
H++A Y + L A D+ KI+ A + +A + G+R P W+ W PK
Sbjct: 102 HEIAHHGYLHESLVGADEDTERKILTRGIEALEEVAGVHPVGYRAPXWEXNWHTPKLLAE 161
Query: 68 FGSILASCSYD 78
FG + S D
Sbjct: 162 FGFLYDSTLXD 172
>pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok. Deposition Of Second Native Structure At 2.4
Angstrom
Length = 733
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW 262
PA +++++ + + AWA GL + +A S + + KE E ++ + +W
Sbjct: 286 PAEKVYAEEI-AEAWASGEGLER--VARYSMEDAKATYELGKEFFPMEAQLSRLVGQSLW 342
Query: 263 SVSWSLTGNLL 273
VS S TGNL+
Sbjct: 343 DVSRSSTGNLV 353
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 13/59 (22%)
Query: 113 HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL 171
H LG +ACG +DG +S A W I +AH + PGA+ +GL
Sbjct: 182 HSLG-EVACGYADGCLSQEEAVLAAYWRGQCIKEAH------------LPPGAMAAVGL 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,271,904
Number of Sequences: 62578
Number of extensions: 427407
Number of successful extensions: 1709
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 317
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)