Query 022111
Match_columns 302
No_of_seqs 167 out of 2005
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1332 Vesicle coat complex C 100.0 5.3E-54 1.2E-58 336.8 23.0 297 1-300 1-299 (299)
2 KOG0271 Notchless-like WD40 re 100.0 9.5E-43 2.1E-47 288.8 23.3 253 6-288 110-398 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 6.7E-42 1.5E-46 286.8 18.9 252 9-298 173-426 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.8E-41 3.9E-46 284.2 17.9 247 3-285 209-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 2E-40 4.3E-45 275.0 23.4 260 5-285 151-479 (480)
6 KOG0645 WD40 repeat protein [G 100.0 4.8E-38 1E-42 250.3 29.4 251 3-287 6-261 (312)
7 KOG0279 G protein beta subunit 100.0 4.6E-37 9.9E-42 245.7 27.6 252 4-288 8-263 (315)
8 KOG0263 Transcription initiati 100.0 5.2E-38 1.1E-42 281.4 22.4 242 11-287 378-649 (707)
9 KOG0279 G protein beta subunit 100.0 1.5E-36 3.2E-41 242.7 26.5 248 3-287 55-313 (315)
10 KOG0286 G-protein beta subunit 100.0 2.2E-36 4.8E-41 243.2 27.4 254 1-287 45-303 (343)
11 KOG0263 Transcription initiati 100.0 4.3E-36 9.3E-41 269.1 23.4 205 6-244 446-650 (707)
12 KOG0315 G-protein beta subunit 100.0 7.6E-35 1.6E-39 229.6 26.1 249 11-290 40-291 (311)
13 KOG0273 Beta-transducin family 100.0 6.4E-35 1.4E-39 247.9 26.7 242 12-288 236-483 (524)
14 KOG0645 WD40 repeat protein [G 100.0 3.1E-34 6.7E-39 228.6 28.8 249 7-287 57-311 (312)
15 KOG0265 U5 snRNP-specific prot 100.0 4.3E-35 9.2E-40 236.5 23.0 248 6-287 42-296 (338)
16 KOG0295 WD40 repeat-containing 100.0 1.7E-35 3.6E-40 244.3 20.9 258 6-285 145-404 (406)
17 KOG2445 Nuclear pore complex c 100.0 2.3E-33 4.9E-38 227.3 28.6 285 4-300 6-331 (361)
18 KOG0284 Polyadenylation factor 100.0 1.4E-35 3E-40 248.0 15.6 249 6-290 133-383 (464)
19 KOG0284 Polyadenylation factor 100.0 3.1E-35 6.8E-40 245.9 15.3 239 11-287 96-337 (464)
20 KOG0295 WD40 repeat-containing 100.0 4.6E-34 1E-38 235.8 21.7 253 3-287 100-364 (406)
21 KOG0281 Beta-TrCP (transducin 100.0 1.2E-34 2.6E-39 238.3 14.5 239 6-287 232-477 (499)
22 KOG0292 Vesicle coat complex C 100.0 4.9E-33 1.1E-37 251.7 25.8 252 7-291 47-325 (1202)
23 KOG0319 WD40-repeat-containing 100.0 2.3E-33 5.1E-38 249.6 22.8 251 6-287 360-619 (775)
24 KOG0285 Pleiotropic regulator 100.0 1.4E-32 3.1E-37 226.7 24.9 253 5-288 145-440 (460)
25 KOG0286 G-protein beta subunit 100.0 4.8E-32 1E-36 218.2 27.0 242 11-285 97-343 (343)
26 KOG0266 WD40 repeat-containing 100.0 7E-32 1.5E-36 245.0 28.8 251 6-287 198-454 (456)
27 KOG0318 WD40 repeat stress pro 100.0 1.6E-31 3.5E-36 230.0 29.0 269 6-291 185-564 (603)
28 KOG0273 Beta-transducin family 100.0 1E-31 2.2E-36 228.5 26.2 249 6-286 271-522 (524)
29 KOG0313 Microtubule binding pr 100.0 3.4E-32 7.4E-37 225.9 22.1 253 5-287 138-418 (423)
30 KOG0266 WD40 repeat-containing 100.0 1.4E-31 3.1E-36 242.9 28.3 251 6-288 153-410 (456)
31 KOG0281 Beta-TrCP (transducin 100.0 9.6E-34 2.1E-38 233.0 12.3 233 10-288 196-429 (499)
32 KOG0291 WD40-repeat-containing 100.0 2.2E-31 4.7E-36 237.7 28.2 244 12-291 308-554 (893)
33 KOG0277 Peroxisomal targeting 100.0 2.7E-32 5.9E-37 215.8 19.0 247 10-286 59-308 (311)
34 KOG0276 Vesicle coat complex C 100.0 1.2E-31 2.6E-36 235.0 25.0 244 10-286 54-297 (794)
35 KOG0264 Nucleosome remodeling 100.0 1.3E-31 2.8E-36 227.1 21.3 258 9-288 122-405 (422)
36 PLN00181 protein SPA1-RELATED; 100.0 7.8E-30 1.7E-34 247.0 33.1 249 8-287 480-738 (793)
37 KOG0316 Conserved WD40 repeat- 100.0 2.5E-30 5.5E-35 202.7 23.7 249 7-294 13-264 (307)
38 KOG0293 WD40 repeat-containing 100.0 1.4E-30 3E-35 218.4 22.6 264 4-289 217-515 (519)
39 KOG0268 Sof1-like rRNA process 100.0 8.1E-32 1.8E-36 222.6 14.9 248 7-288 62-346 (433)
40 cd00200 WD40 WD40 domain, foun 100.0 4.4E-29 9.6E-34 211.3 31.2 249 5-290 3-252 (289)
41 KOG0283 WD40 repeat-containing 100.0 1.1E-30 2.3E-35 236.2 22.4 245 9-286 265-575 (712)
42 KOG0292 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 236.4 22.4 249 9-288 7-281 (1202)
43 KOG0310 Conserved WD40 repeat- 100.0 3.4E-30 7.4E-35 220.1 23.8 245 5-285 62-306 (487)
44 PLN00181 protein SPA1-RELATED; 100.0 2.2E-29 4.7E-34 243.9 32.5 248 10-286 531-792 (793)
45 KOG0276 Vesicle coat complex C 100.0 4.1E-30 8.9E-35 225.4 23.4 252 4-288 6-258 (794)
46 KOG0643 Translation initiation 100.0 4.2E-29 9E-34 199.1 24.8 249 5-285 4-315 (327)
47 KOG0291 WD40-repeat-containing 100.0 6.5E-29 1.4E-33 221.9 28.7 248 7-288 346-613 (893)
48 KOG0282 mRNA splicing factor [ 100.0 1.6E-30 3.4E-35 221.9 17.6 248 6-285 209-503 (503)
49 KOG0313 Microtubule binding pr 100.0 9.6E-30 2.1E-34 211.4 21.3 247 8-286 102-375 (423)
50 cd00200 WD40 WD40 domain, foun 100.0 4E-28 8.6E-33 205.5 31.0 243 6-285 46-289 (289)
51 KOG0315 G-protein beta subunit 100.0 3.7E-28 8.1E-33 191.9 25.9 233 23-289 10-247 (311)
52 KOG0316 Conserved WD40 repeat- 100.0 1.8E-28 3.9E-33 192.3 22.8 246 4-286 52-298 (307)
53 KOG0319 WD40-repeat-containing 100.0 9.7E-29 2.1E-33 220.3 23.6 251 7-288 319-578 (775)
54 PTZ00421 coronin; Provisional 100.0 1.2E-27 2.6E-32 217.2 31.2 253 10-290 19-293 (493)
55 KOG0264 Nucleosome remodeling 100.0 2.8E-29 6.1E-34 212.9 19.2 221 3-244 169-405 (422)
56 PTZ00421 coronin; Provisional 100.0 2E-27 4.4E-32 215.7 32.7 258 6-298 70-341 (493)
57 KOG0318 WD40 repeat stress pro 100.0 5.6E-28 1.2E-32 208.3 27.0 252 6-287 54-350 (603)
58 PTZ00420 coronin; Provisional 100.0 1.8E-27 3.9E-32 217.4 31.3 230 29-288 50-294 (568)
59 KOG0278 Serine/threonine kinas 100.0 7.2E-30 1.6E-34 201.7 13.1 244 6-288 54-298 (334)
60 KOG0277 Peroxisomal targeting 100.0 1.5E-29 3.3E-34 200.2 15.0 211 4-242 97-308 (311)
61 KOG0265 U5 snRNP-specific prot 100.0 2.8E-28 6E-33 197.2 22.2 245 6-283 85-334 (338)
62 KOG0296 Angio-associated migra 100.0 2.3E-27 5E-32 196.4 27.3 245 4-287 57-398 (399)
63 KOG0647 mRNA export protein (c 100.0 5.4E-28 1.2E-32 195.7 22.5 257 7-278 23-313 (347)
64 KOG1407 WD40 repeat protein [F 100.0 3.8E-28 8.2E-33 193.0 21.0 240 7-279 16-293 (313)
65 KOG0300 WD40 repeat-containing 100.0 1.9E-28 4.2E-33 199.8 19.7 250 5-288 142-429 (481)
66 KOG0285 Pleiotropic regulator 100.0 1.7E-28 3.7E-33 202.7 18.2 207 47-288 143-349 (460)
67 KOG0305 Anaphase promoting com 100.0 1E-27 2.3E-32 211.5 23.1 242 9-287 215-461 (484)
68 KOG0640 mRNA cleavage stimulat 100.0 6.3E-28 1.4E-32 196.1 19.6 253 7-286 108-425 (430)
69 KOG0306 WD40-repeat-containing 100.0 3E-27 6.6E-32 211.2 23.8 249 6-288 368-665 (888)
70 PTZ00420 coronin; Provisional 100.0 2.3E-26 5.1E-31 210.1 28.7 264 5-299 68-346 (568)
71 KOG0299 U3 snoRNP-associated p 100.0 8.3E-27 1.8E-31 198.2 23.7 251 8-290 199-459 (479)
72 KOG0289 mRNA splicing factor [ 100.0 1.3E-26 2.8E-31 195.8 24.5 250 13-297 221-471 (506)
73 KOG0973 Histone transcription 100.0 1.3E-26 2.9E-31 214.8 24.7 256 9-287 10-355 (942)
74 KOG0294 WD40 repeat-containing 100.0 3.6E-26 7.8E-31 186.2 23.2 245 4-289 36-283 (362)
75 KOG0772 Uncharacterized conser 100.0 3.4E-27 7.3E-32 203.1 18.0 259 6-286 162-444 (641)
76 KOG1446 Histone H3 (Lys4) meth 100.0 3.7E-25 7.9E-30 180.5 28.2 251 3-287 6-303 (311)
77 KOG0274 Cdc4 and related F-box 100.0 4.3E-26 9.4E-31 207.6 25.4 236 7-287 245-482 (537)
78 KOG0274 Cdc4 and related F-box 100.0 6.1E-26 1.3E-30 206.7 25.4 242 10-296 207-450 (537)
79 KOG0308 Conserved WD40 repeat- 99.9 6.7E-27 1.4E-31 206.1 17.4 249 9-287 19-285 (735)
80 KOG1332 Vesicle coat complex C 99.9 1.6E-26 3.4E-31 182.3 17.6 221 5-243 50-286 (299)
81 KOG0301 Phospholipase A2-activ 99.9 3.4E-26 7.3E-31 203.0 21.8 238 7-287 10-249 (745)
82 KOG0302 Ribosome Assembly prot 99.9 1.8E-26 4E-31 191.8 18.6 216 52-289 148-380 (440)
83 KOG0641 WD40 repeat protein [G 99.9 9.4E-25 2E-29 170.7 26.8 250 7-286 85-348 (350)
84 KOG0302 Ribosome Assembly prot 99.9 6.9E-26 1.5E-30 188.4 21.3 257 8-286 148-437 (440)
85 KOG1036 Mitotic spindle checkp 99.9 2.3E-25 5E-30 181.0 22.8 235 5-278 7-294 (323)
86 KOG0288 WD40 repeat protein Ti 99.9 4.3E-27 9.3E-32 197.5 12.0 264 5-285 169-459 (459)
87 KOG0275 Conserved WD40 repeat- 99.9 5.7E-26 1.2E-30 185.9 17.7 255 6-295 208-474 (508)
88 KOG0301 Phospholipase A2-activ 99.9 1.2E-25 2.6E-30 199.5 20.9 235 7-288 53-289 (745)
89 KOG0282 mRNA splicing factor [ 99.9 1.8E-26 3.9E-31 197.2 14.8 213 46-288 205-463 (503)
90 KOG0267 Microtubule severing p 99.9 3.6E-27 7.8E-32 210.0 10.1 240 7-283 24-263 (825)
91 KOG0299 U3 snoRNP-associated p 99.9 4E-25 8.6E-30 188.0 21.8 249 7-289 138-412 (479)
92 KOG0640 mRNA cleavage stimulat 99.9 3.9E-25 8.4E-30 180.0 18.0 221 49-295 106-343 (430)
93 KOG0293 WD40 repeat-containing 99.9 2.3E-25 4.9E-30 187.3 16.6 220 4-244 262-514 (519)
94 KOG0306 WD40-repeat-containing 99.9 3.1E-24 6.8E-29 192.1 24.4 200 56-287 413-622 (888)
95 KOG0283 WD40 repeat-containing 99.9 1.5E-24 3.3E-29 196.5 20.8 207 5-244 363-577 (712)
96 KOG0278 Serine/threonine kinas 99.9 1.8E-25 4E-30 176.9 12.9 249 5-295 8-262 (334)
97 KOG0269 WD40 repeat-containing 99.9 3.3E-25 7.2E-30 198.8 15.7 235 16-279 92-331 (839)
98 KOG0270 WD40 repeat-containing 99.9 2.3E-24 5E-29 182.7 19.8 236 23-289 192-451 (463)
99 KOG0641 WD40 repeat protein [G 99.9 1.4E-22 3E-27 158.6 27.6 247 11-288 32-304 (350)
100 KOG0289 mRNA splicing factor [ 99.9 2.4E-23 5.2E-28 176.1 24.5 247 5-285 255-504 (506)
101 KOG0310 Conserved WD40 repeat- 99.9 6.6E-24 1.4E-28 181.8 20.4 241 11-287 26-268 (487)
102 KOG0269 WD40 repeat-containing 99.9 2.2E-24 4.7E-29 193.6 18.1 256 14-299 42-306 (839)
103 KOG0296 Angio-associated migra 99.9 2.1E-23 4.5E-28 173.0 22.4 220 7-243 102-398 (399)
104 KOG2096 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 170.1 22.0 254 7-288 82-361 (420)
105 KOG1063 RNA polymerase II elon 99.9 2.6E-23 5.6E-28 184.8 23.2 269 7-298 50-357 (764)
106 KOG0646 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 178.8 20.2 229 11-268 81-329 (476)
107 KOG0305 Anaphase promoting com 99.9 4.3E-23 9.2E-28 182.4 23.5 232 17-288 183-420 (484)
108 KOG1274 WD40 repeat protein [G 99.9 1.7E-22 3.6E-27 184.7 27.4 248 8-288 10-263 (933)
109 KOG0772 Uncharacterized conser 99.9 2.6E-23 5.7E-28 179.3 20.6 247 12-288 215-489 (641)
110 KOG0643 Translation initiation 99.9 5E-23 1.1E-27 164.5 20.4 212 6-244 47-318 (327)
111 KOG1407 WD40 repeat protein [F 99.9 2.2E-23 4.7E-28 166.0 18.1 214 49-291 14-274 (313)
112 KOG0308 Conserved WD40 repeat- 99.9 5.2E-24 1.1E-28 188.0 15.3 251 5-286 67-326 (735)
113 KOG0300 WD40 repeat-containing 99.9 7.8E-23 1.7E-27 167.1 19.1 251 6-288 185-477 (481)
114 KOG0973 Histone transcription 99.9 1E-22 2.2E-27 189.1 22.3 220 8-244 66-356 (942)
115 KOG0275 Conserved WD40 repeat- 99.9 2.2E-23 4.8E-28 170.8 14.4 242 8-285 260-507 (508)
116 KOG4283 Transcription-coupled 99.9 1.6E-21 3.6E-26 157.9 24.0 216 5-245 37-278 (397)
117 KOG1408 WD40 repeat protein [F 99.9 1.9E-22 4.2E-27 179.9 19.3 256 9-288 457-714 (1080)
118 KOG4283 Transcription-coupled 99.9 1.6E-22 3.5E-27 163.7 17.0 225 52-301 40-291 (397)
119 KOG2445 Nuclear pore complex c 99.9 6.3E-21 1.4E-25 155.3 23.6 221 52-287 10-256 (361)
120 KOG0639 Transducin-like enhanc 99.9 3E-22 6.5E-27 172.4 16.4 238 11-286 465-703 (705)
121 KOG4328 WD40 protein [Function 99.9 1.8E-21 4E-26 165.7 20.5 261 6-291 181-453 (498)
122 KOG0270 WD40 repeat-containing 99.9 1.8E-21 3.9E-26 165.2 18.0 212 7-245 239-451 (463)
123 KOG1063 RNA polymerase II elon 99.9 2.1E-20 4.5E-25 166.5 23.1 272 6-289 262-650 (764)
124 KOG0290 Conserved WD40 repeat- 99.9 2.4E-20 5.1E-25 150.9 20.7 253 8-284 93-362 (364)
125 KOG0288 WD40 repeat protein Ti 99.9 1.2E-21 2.6E-26 164.9 13.8 207 5-240 213-458 (459)
126 KOG1034 Transcriptional repres 99.9 5.4E-21 1.2E-25 156.9 17.1 252 9-286 87-382 (385)
127 KOG0321 WD40 repeat-containing 99.9 2.2E-20 4.7E-25 165.0 22.0 254 7-287 96-391 (720)
128 KOG0267 Microtubule severing p 99.9 1.8E-22 4E-27 180.2 8.8 195 7-235 66-260 (825)
129 KOG0268 Sof1-like rRNA process 99.9 2.8E-21 6.1E-26 160.4 14.3 208 4-243 102-345 (433)
130 KOG1539 WD repeat protein [Gen 99.9 3.4E-20 7.3E-25 168.1 22.4 254 7-285 284-646 (910)
131 KOG2096 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 151.8 18.6 214 48-288 79-309 (420)
132 KOG1007 WD repeat protein TSSC 99.9 3.8E-20 8.3E-25 149.6 18.7 238 23-286 26-288 (370)
133 KOG1523 Actin-related protein 99.9 3.5E-19 7.6E-24 145.9 23.9 265 10-299 9-290 (361)
134 KOG1408 WD40 repeat protein [F 99.9 1.1E-19 2.5E-24 162.4 22.7 252 16-287 329-671 (1080)
135 KOG2106 Uncharacterized conser 99.9 5.9E-19 1.3E-23 152.3 26.0 244 6-288 240-522 (626)
136 KOG0647 mRNA export protein (c 99.9 7.1E-20 1.5E-24 148.8 19.2 210 53-287 25-281 (347)
137 KOG0639 Transducin-like enhanc 99.9 3.9E-20 8.4E-25 159.5 17.7 244 9-288 417-664 (705)
138 KOG2055 WD40 repeat protein [G 99.9 1.9E-19 4.1E-24 153.7 21.5 252 11-287 213-512 (514)
139 KOG0294 WD40 repeat-containing 99.9 2.6E-19 5.7E-24 146.3 21.1 222 26-288 4-238 (362)
140 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.8E-18 8.2E-23 146.8 29.3 238 13-291 32-283 (300)
141 KOG2048 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 154.0 27.0 255 12-298 26-287 (691)
142 KOG1446 Histone H3 (Lys4) meth 99.8 8.3E-19 1.8E-23 143.5 22.6 203 5-243 94-303 (311)
143 KOG0307 Vesicle coat complex C 99.8 1.4E-20 3.1E-25 175.9 14.0 247 13-287 66-327 (1049)
144 KOG1273 WD40 repeat protein [G 99.8 4.4E-19 9.4E-24 145.1 20.6 249 14-293 26-328 (405)
145 KOG4378 Nuclear protein COP1 [ 99.8 7.8E-20 1.7E-24 157.4 16.7 240 13-286 36-279 (673)
146 KOG1007 WD repeat protein TSSC 99.8 5.5E-19 1.2E-23 143.0 20.4 254 5-283 57-357 (370)
147 KOG4328 WD40 protein [Function 99.8 1.6E-19 3.4E-24 154.1 17.9 217 49-287 180-399 (498)
148 KOG1009 Chromatin assembly com 99.8 9.8E-19 2.1E-23 147.3 20.2 143 11-160 13-176 (434)
149 KOG1274 WD40 repeat protein [G 99.8 3.3E-18 7.2E-23 156.8 23.6 229 10-276 55-288 (933)
150 KOG2919 Guanine nucleotide-bin 99.8 2.1E-18 4.6E-23 141.6 20.1 254 12-293 105-375 (406)
151 KOG1036 Mitotic spindle checkp 99.8 1.7E-18 3.8E-23 141.1 19.3 207 54-298 12-273 (323)
152 KOG1587 Cytoplasmic dynein int 99.8 4.1E-18 8.8E-23 154.8 23.5 254 11-287 242-516 (555)
153 KOG1538 Uncharacterized conser 99.8 8.4E-18 1.8E-22 149.6 24.6 239 13-286 14-292 (1081)
154 KOG2106 Uncharacterized conser 99.8 1.9E-17 4.2E-22 143.0 25.7 253 11-291 200-481 (626)
155 KOG0650 WD40 repeat nucleolar 99.8 1.1E-17 2.4E-22 147.2 24.3 262 6-284 395-732 (733)
156 KOG4378 Nuclear protein COP1 [ 99.8 7.8E-19 1.7E-23 151.3 16.7 220 17-270 85-305 (673)
157 KOG1524 WD40 repeat-containing 99.8 1.1E-18 2.3E-23 151.8 16.3 217 23-293 75-291 (737)
158 KOG0646 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 146.3 19.0 209 7-243 119-350 (476)
159 KOG2048 WD40 repeat protein [G 99.8 4.8E-17 1E-21 144.9 25.9 244 7-279 64-310 (691)
160 KOG0307 Vesicle coat complex C 99.8 2.2E-19 4.7E-24 168.0 11.4 211 6-245 111-329 (1049)
161 KOG1523 Actin-related protein 99.8 1.7E-17 3.6E-22 136.1 20.8 213 55-290 10-239 (361)
162 KOG0321 WD40 repeat-containing 99.8 1.4E-17 3.1E-22 147.4 21.0 258 17-288 55-348 (720)
163 KOG2919 Guanine nucleotide-bin 99.8 2.6E-17 5.6E-22 135.2 20.6 252 14-293 52-333 (406)
164 KOG0642 Cell-cycle nuclear pro 99.8 2.8E-18 6.1E-23 149.9 15.6 225 7-244 290-562 (577)
165 KOG0303 Actin-binding protein 99.8 1E-17 2.2E-22 140.8 18.0 222 50-301 76-312 (472)
166 KOG0644 Uncharacterized conser 99.8 8.7E-19 1.9E-23 159.1 12.4 257 7-286 186-467 (1113)
167 KOG1034 Transcriptional repres 99.8 2.5E-17 5.5E-22 135.5 19.0 260 6-290 33-340 (385)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-15 3.4E-20 134.8 32.5 253 6-291 60-318 (466)
169 KOG1539 WD repeat protein [Gen 99.8 4.7E-16 1E-20 141.6 27.8 282 7-300 198-619 (910)
170 KOG0322 G-protein beta subunit 99.8 1.3E-17 2.7E-22 133.6 14.7 255 5-286 8-322 (323)
171 KOG4227 WD40 repeat protein [G 99.8 9.3E-17 2E-21 135.1 20.4 254 7-287 52-387 (609)
172 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 1.3E-15 2.8E-20 131.0 28.3 225 24-288 2-238 (300)
173 KOG1273 WD40 repeat protein [G 99.8 7.8E-17 1.7E-21 132.1 18.3 211 58-287 26-280 (405)
174 PRK11028 6-phosphogluconolacto 99.8 5.6E-15 1.2E-19 129.5 31.5 262 12-297 35-315 (330)
175 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 3.1E-21 131.7 17.8 198 24-244 41-243 (376)
176 KOG0290 Conserved WD40 repeat- 99.7 3.7E-16 8.1E-21 126.8 18.5 206 7-233 146-356 (364)
177 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 3E-21 139.1 15.8 219 49-291 44-307 (758)
178 COG2319 FOG: WD40 repeat [Gene 99.7 2.9E-14 6.3E-19 126.7 31.3 246 13-290 111-362 (466)
179 KOG0303 Actin-binding protein 99.7 1.2E-15 2.5E-20 128.5 19.3 249 6-288 76-338 (472)
180 KOG1009 Chromatin assembly com 99.7 2.9E-16 6.3E-21 132.5 14.4 198 56-278 14-250 (434)
181 KOG0642 Cell-cycle nuclear pro 99.7 5.3E-16 1.2E-20 135.8 16.0 214 49-287 288-561 (577)
182 KOG1188 WD40 repeat protein [G 99.7 2E-15 4.2E-20 125.0 18.2 196 70-288 41-243 (376)
183 KOG0649 WD40 repeat protein [G 99.7 2E-14 4.3E-19 114.2 22.3 236 13-286 12-273 (325)
184 KOG1517 Guanine nucleotide bin 99.7 9.7E-15 2.1E-19 136.2 23.6 252 13-287 1066-1333(1387)
185 KOG1963 WD40 repeat protein [G 99.7 2E-14 4.3E-19 131.9 24.7 270 9-288 203-539 (792)
186 KOG2110 Uncharacterized conser 99.7 5.5E-14 1.2E-18 117.7 25.0 237 11-287 5-248 (391)
187 KOG1445 Tumor-specific antigen 99.7 1.9E-15 4E-20 134.2 16.7 245 22-291 590-848 (1012)
188 PRK01742 tolB translocation pr 99.7 1E-14 2.3E-19 132.1 21.3 222 6-269 198-426 (429)
189 KOG0771 Prolactin regulatory e 99.7 2.2E-15 4.8E-20 127.8 15.6 202 15-244 148-355 (398)
190 KOG1334 WD40 repeat protein [G 99.7 3.7E-15 8.1E-20 128.6 16.5 268 2-288 133-425 (559)
191 KOG1445 Tumor-specific antigen 99.7 8.8E-16 1.9E-20 136.3 12.3 199 12-244 628-845 (1012)
192 KOG1587 Cytoplasmic dynein int 99.7 3.3E-14 7.2E-19 129.5 22.8 233 33-287 222-472 (555)
193 KOG0649 WD40 repeat protein [G 99.7 2.1E-14 4.5E-19 114.1 18.5 202 58-291 13-239 (325)
194 KOG0771 Prolactin regulatory e 99.7 8.7E-15 1.9E-19 124.2 17.3 206 59-289 148-356 (398)
195 KOG1538 Uncharacterized conser 99.7 2.7E-14 5.8E-19 127.6 20.9 208 5-244 47-294 (1081)
196 KOG1310 WD40 repeat protein [G 99.6 9.2E-15 2E-19 127.9 16.2 222 4-245 43-305 (758)
197 KOG1524 WD40 repeat-containing 99.6 1.1E-14 2.3E-19 127.2 15.6 239 9-288 12-256 (737)
198 PRK11028 6-phosphogluconolacto 99.6 3.4E-12 7.3E-17 111.9 31.6 239 26-290 5-261 (330)
199 PRK01742 tolB translocation pr 99.6 1.3E-13 2.8E-18 125.0 22.2 212 32-286 183-400 (429)
200 KOG1517 Guanine nucleotide bin 99.6 9.2E-14 2E-18 129.8 20.8 251 12-288 1110-1382(1387)
201 KOG0650 WD40 repeat nucleolar 99.6 4.2E-14 9.2E-19 124.9 17.5 221 47-285 392-678 (733)
202 KOG2055 WD40 repeat protein [G 99.6 1.7E-13 3.7E-18 117.7 19.6 201 55-286 213-416 (514)
203 KOG1963 WD40 repeat protein [G 99.6 1.1E-12 2.3E-17 120.7 24.0 243 16-288 21-323 (792)
204 KOG2111 Uncharacterized conser 99.6 3.1E-12 6.8E-17 105.4 24.1 237 13-288 7-257 (346)
205 KOG2139 WD40 repeat protein [G 99.5 3.2E-12 7E-17 107.0 20.9 233 12-278 99-365 (445)
206 KOG2394 WD40 protein DMR-N9 [G 99.5 6.7E-13 1.4E-17 116.1 16.5 163 12-219 220-384 (636)
207 KOG1240 Protein kinase contain 99.5 1.9E-11 4.1E-16 116.2 25.7 260 7-288 1044-1335(1431)
208 KOG0644 Uncharacterized conser 99.5 6.1E-14 1.3E-18 128.1 8.5 209 48-288 183-427 (1113)
209 KOG4227 WD40 repeat protein [G 99.5 9.8E-13 2.1E-17 111.1 14.1 208 49-279 50-265 (609)
210 KOG2111 Uncharacterized conser 99.5 1.4E-10 3E-15 95.8 25.4 180 33-245 75-258 (346)
211 KOG1272 WD40-repeat-containing 99.5 4.5E-13 9.8E-18 115.3 10.8 234 13-289 131-364 (545)
212 KOG0322 G-protein beta subunit 99.5 7.1E-13 1.5E-17 106.5 10.9 147 71-242 167-322 (323)
213 PRK03629 tolB translocation pr 99.4 4.8E-11 1E-15 108.1 23.7 219 9-268 196-427 (429)
214 PF10282 Lactonase: Lactonase, 99.4 8.7E-09 1.9E-13 90.9 36.6 263 15-297 40-333 (345)
215 PRK05137 tolB translocation pr 99.4 1.1E-10 2.4E-15 106.2 25.3 203 33-278 182-396 (435)
216 PF08662 eIF2A: Eukaryotic tra 99.4 2.1E-11 4.5E-16 98.3 18.2 109 149-287 59-179 (194)
217 PRK02889 tolB translocation pr 99.4 1.7E-10 3.6E-15 104.7 25.9 221 34-293 177-407 (427)
218 KOG1354 Serine/threonine prote 99.4 6.5E-11 1.4E-15 98.7 20.9 253 12-286 26-358 (433)
219 KOG2394 WD40 protein DMR-N9 [G 99.4 1.7E-12 3.7E-17 113.6 10.9 96 11-113 290-385 (636)
220 KOG1334 WD40 repeat protein [G 99.4 5.5E-12 1.2E-16 109.3 12.5 217 49-286 136-365 (559)
221 KOG3881 Uncharacterized conser 99.4 6.6E-11 1.4E-15 100.1 18.5 194 24-245 116-322 (412)
222 PRK02889 tolB translocation pr 99.4 1.8E-10 4E-15 104.4 23.0 223 8-268 192-424 (427)
223 KOG2110 Uncharacterized conser 99.4 2.3E-10 4.9E-15 96.3 20.7 187 24-244 57-249 (391)
224 PF08662 eIF2A: Eukaryotic tra 99.4 1.5E-10 3.3E-15 93.2 19.3 149 16-194 10-180 (194)
225 PRK03629 tolB translocation pr 99.4 6.8E-10 1.5E-14 100.7 25.8 203 34-279 180-394 (429)
226 PRK04922 tolB translocation pr 99.3 4.4E-10 9.5E-15 102.2 23.3 211 33-286 184-410 (433)
227 PRK05137 tolB translocation pr 99.3 5E-10 1.1E-14 101.9 23.7 218 7-268 197-432 (435)
228 PRK04922 tolB translocation pr 99.3 5.5E-10 1.2E-14 101.6 22.7 219 8-268 200-432 (433)
229 KOG0974 WD-repeat protein WDR6 99.3 1.2E-10 2.6E-15 109.2 17.2 195 13-244 89-289 (967)
230 KOG3881 Uncharacterized conser 99.3 3E-10 6.5E-15 96.2 17.8 249 11-288 55-321 (412)
231 KOG0280 Uncharacterized conser 99.3 1.8E-10 3.9E-15 94.2 15.7 203 16-241 126-331 (339)
232 KOG2139 WD40 repeat protein [G 99.3 4.7E-10 1E-14 94.3 17.9 197 57-286 100-308 (445)
233 KOG2321 WD40 repeat protein [G 99.2 1.7E-09 3.6E-14 95.9 20.1 256 9-295 49-354 (703)
234 KOG1272 WD40-repeat-containing 99.2 1.7E-11 3.6E-16 105.8 7.4 230 11-280 170-401 (545)
235 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.4E-14 89.7 17.4 229 32-286 45-283 (339)
236 KOG4497 Uncharacterized conser 99.2 7.4E-09 1.6E-13 86.2 22.0 255 14-287 51-391 (447)
237 COG5170 CDC55 Serine/threonine 99.2 4.1E-10 8.8E-15 93.0 13.8 253 11-285 26-365 (460)
238 KOG1240 Protein kinase contain 99.2 4.2E-09 9E-14 100.7 21.9 220 45-288 1038-1274(1431)
239 TIGR02800 propeller_TolB tol-p 99.2 1.7E-08 3.7E-13 91.4 25.2 203 34-279 171-385 (417)
240 TIGR02800 propeller_TolB tol-p 99.2 6.7E-09 1.5E-13 94.0 22.1 188 9-235 187-386 (417)
241 KOG1064 RAVE (regulator of V-A 99.2 2.5E-10 5.5E-15 112.3 12.4 187 13-244 2210-2399(2439)
242 KOG4497 Uncharacterized conser 99.2 7.2E-10 1.6E-14 92.1 12.9 223 17-286 14-239 (447)
243 KOG1354 Serine/threonine prote 99.2 1.1E-09 2.3E-14 91.6 13.7 228 55-289 25-303 (433)
244 COG2706 3-carboxymuconate cycl 99.2 8.5E-07 1.8E-11 75.1 30.8 262 10-297 38-332 (346)
245 KOG0974 WD-repeat protein WDR6 99.2 3.5E-09 7.5E-14 99.6 18.3 184 69-287 99-288 (967)
246 PRK00178 tolB translocation pr 99.1 2.9E-08 6.2E-13 90.4 23.9 219 9-268 196-427 (430)
247 KOG2321 WD40 repeat protein [G 99.1 3.5E-09 7.7E-14 93.9 16.4 200 16-245 138-345 (703)
248 KOG1409 Uncharacterized conser 99.1 1E-08 2.3E-13 85.8 17.3 162 12-193 69-270 (404)
249 KOG4532 WD40-like repeat conta 99.1 6.3E-08 1.4E-12 78.7 20.6 244 17-286 73-330 (344)
250 PRK01029 tolB translocation pr 99.1 9E-08 2E-12 86.7 24.4 222 13-270 186-426 (428)
251 PF02239 Cytochrom_D1: Cytochr 99.1 3.1E-07 6.7E-12 81.4 26.3 251 15-297 40-357 (369)
252 PF10282 Lactonase: Lactonase, 99.1 3.1E-06 6.8E-11 74.7 32.7 250 26-297 2-286 (345)
253 KOG1409 Uncharacterized conser 99.1 4.3E-08 9.3E-13 82.1 19.3 249 7-288 20-271 (404)
254 PRK04792 tolB translocation pr 99.1 2.3E-07 5.1E-12 84.6 25.9 218 34-294 199-430 (448)
255 PRK00178 tolB translocation pr 99.1 2.3E-07 4.9E-12 84.5 25.6 214 35-291 181-408 (430)
256 KOG0309 Conserved WD40 repeat- 99.0 8.6E-10 1.9E-14 100.4 9.4 218 7-244 110-340 (1081)
257 PRK04792 tolB translocation pr 99.0 2.3E-07 4.9E-12 84.7 24.8 216 10-268 216-446 (448)
258 COG2706 3-carboxymuconate cycl 99.0 2.9E-06 6.3E-11 71.9 28.9 244 32-291 15-278 (346)
259 KOG4547 WD40 repeat-containing 99.0 8.6E-08 1.9E-12 85.5 19.7 191 69-287 5-220 (541)
260 KOG4547 WD40 repeat-containing 99.0 2.8E-07 6E-12 82.3 22.8 199 21-245 3-222 (541)
261 PRK01029 tolB translocation pr 99.0 4.4E-07 9.6E-12 82.3 24.4 227 34-295 166-410 (428)
262 KOG1064 RAVE (regulator of V-A 98.9 1.2E-08 2.7E-13 100.8 12.6 218 24-291 2181-2402(2439)
263 KOG2314 Translation initiation 98.9 5.4E-07 1.2E-11 80.1 21.2 249 16-287 215-525 (698)
264 KOG0309 Conserved WD40 repeat- 98.9 1.1E-08 2.5E-13 93.2 11.1 229 11-268 24-255 (1081)
265 KOG3914 WD repeat protein WDR4 98.9 6.7E-08 1.4E-12 82.5 13.7 156 17-196 68-226 (390)
266 PLN02919 haloacid dehalogenase 98.8 8.7E-06 1.9E-10 81.5 29.9 247 16-290 572-891 (1057)
267 KOG2041 WD40 repeat protein [G 98.8 1.8E-07 3.9E-12 85.4 16.1 241 10-278 13-278 (1189)
268 PF04762 IKI3: IKI3 family; I 98.8 4.7E-06 1E-10 82.0 27.0 253 10-292 119-461 (928)
269 KOG3914 WD repeat protein WDR4 98.8 2.3E-07 5E-12 79.3 14.5 152 68-246 73-226 (390)
270 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 59.0 5.3 37 201-241 3-39 (39)
271 KOG4190 Uncharacterized conser 98.8 2.2E-08 4.7E-13 88.8 8.5 206 7-242 731-947 (1034)
272 KOG4532 WD40-like repeat conta 98.8 4.4E-06 9.5E-11 68.2 20.1 202 70-299 85-293 (344)
273 COG5170 CDC55 Serine/threonine 98.7 1.3E-07 2.7E-12 78.5 10.4 225 55-288 26-310 (460)
274 PF00400 WD40: WD domain, G-be 98.7 7.8E-08 1.7E-12 55.9 6.6 38 46-85 2-39 (39)
275 PF04762 IKI3: IKI3 family; I 98.7 1.2E-05 2.6E-10 79.1 23.6 236 11-292 75-337 (928)
276 KOG0882 Cyclophilin-related pe 98.6 1.2E-06 2.5E-11 76.2 14.5 254 9-288 7-306 (558)
277 PF15492 Nbas_N: Neuroblastoma 98.6 0.00018 3.8E-09 59.6 24.6 219 16-244 2-260 (282)
278 KOG2315 Predicted translation 98.6 3.1E-05 6.7E-10 69.2 21.6 234 15-287 129-390 (566)
279 COG5354 Uncharacterized protei 98.6 2.8E-05 6E-10 68.8 20.9 246 13-286 73-347 (561)
280 COG4946 Uncharacterized protei 98.6 8.9E-05 1.9E-09 65.3 23.7 143 22-194 331-478 (668)
281 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00054 1.2E-08 60.0 28.2 242 19-293 53-336 (352)
282 KOG2066 Vacuolar assembly/sort 98.5 3E-06 6.6E-11 78.5 14.3 189 11-243 39-233 (846)
283 KOG1832 HIV-1 Vpr-binding prot 98.5 2.3E-07 5E-12 86.6 6.4 223 1-274 1091-1317(1516)
284 KOG4190 Uncharacterized conser 98.5 6.6E-07 1.4E-11 79.6 9.0 176 48-245 728-908 (1034)
285 PF02239 Cytochrom_D1: Cytochr 98.5 7.3E-05 1.6E-09 66.4 21.8 193 70-291 6-206 (369)
286 KOG4714 Nucleoporin [Nuclear s 98.4 1.7E-06 3.7E-11 70.2 9.6 148 69-243 101-254 (319)
287 KOG2695 WD40 repeat protein [G 98.4 1.2E-06 2.5E-11 73.8 8.9 149 27-196 228-379 (425)
288 PLN02919 haloacid dehalogenase 98.4 0.0001 2.2E-09 73.9 24.2 215 14-245 626-890 (1057)
289 KOG4714 Nucleoporin [Nuclear s 98.4 9.1E-07 2E-11 71.8 7.2 74 12-87 180-254 (319)
290 KOG0882 Cyclophilin-related pe 98.4 6.4E-06 1.4E-10 71.7 12.1 209 54-287 8-231 (558)
291 PF15492 Nbas_N: Neuroblastoma 98.4 0.00089 1.9E-08 55.5 23.7 203 68-288 8-260 (282)
292 KOG2314 Translation initiation 98.3 0.00041 8.8E-09 62.3 22.6 95 184-287 469-573 (698)
293 PF11768 DUF3312: Protein of u 98.3 0.00082 1.8E-08 61.0 24.7 74 147-244 257-330 (545)
294 COG5354 Uncharacterized protei 98.3 0.00011 2.4E-09 65.1 18.4 237 12-287 33-306 (561)
295 PRK04043 tolB translocation pr 98.3 0.0027 5.8E-08 57.5 28.5 194 57-291 189-402 (419)
296 KOG1275 PAB-dependent poly(A) 98.3 2.7E-05 5.8E-10 73.4 14.8 185 23-241 147-340 (1118)
297 KOG2041 WD40 repeat protein [G 98.2 0.00015 3.3E-09 66.9 17.9 252 4-283 64-333 (1189)
298 KOG2315 Predicted translation 98.2 0.00072 1.5E-08 60.8 21.6 216 10-268 164-410 (566)
299 COG4946 Uncharacterized protei 98.2 0.0018 4E-08 57.3 23.0 217 19-275 274-505 (668)
300 KOG1275 PAB-dependent poly(A) 98.2 7.1E-05 1.5E-09 70.7 15.0 194 69-296 147-351 (1118)
301 KOG1645 RING-finger-containing 98.2 0.00036 7.9E-09 60.3 18.0 81 5-89 187-268 (463)
302 KOG2695 WD40 repeat protein [G 98.2 8.8E-06 1.9E-10 68.7 8.1 125 10-136 251-378 (425)
303 PRK04043 tolB translocation pr 98.2 0.0023 5.1E-08 57.9 24.4 180 13-233 189-387 (419)
304 KOG2114 Vacuolar assembly/sort 98.1 0.00046 9.9E-09 65.0 19.0 199 18-246 30-246 (933)
305 KOG2066 Vacuolar assembly/sort 98.1 0.00042 9.1E-09 64.8 18.6 120 7-136 54-189 (846)
306 KOG1645 RING-finger-containing 98.1 0.00047 1E-08 59.6 17.0 83 48-136 186-268 (463)
307 PF11768 DUF3312: Protein of u 98.0 0.00047 1E-08 62.5 16.9 112 59-194 209-330 (545)
308 KOG1008 Uncharacterized conser 97.9 6.2E-06 1.3E-10 74.8 3.1 208 13-245 58-277 (783)
309 KOG1920 IkappaB kinase complex 97.9 0.004 8.7E-08 61.0 20.8 236 12-293 69-327 (1265)
310 KOG1008 Uncharacterized conser 97.8 1.4E-05 3.1E-10 72.5 3.6 208 56-288 57-276 (783)
311 KOG1912 WD40 repeat protein [G 97.8 0.00089 1.9E-08 62.5 14.5 165 104-285 17-184 (1062)
312 KOG1912 WD40 repeat protein [G 97.8 0.0063 1.4E-07 57.2 19.7 257 10-287 14-304 (1062)
313 KOG1920 IkappaB kinase complex 97.7 0.014 3.1E-07 57.4 22.3 201 10-242 108-364 (1265)
314 PF08450 SGL: SMP-30/Gluconola 97.7 0.021 4.6E-07 47.7 29.3 226 16-276 4-243 (246)
315 KOG1832 HIV-1 Vpr-binding prot 97.7 4.4E-05 9.5E-10 71.9 4.8 207 46-296 1092-1300(1516)
316 TIGR03300 assembly_YfgL outer 97.7 0.033 7.2E-07 49.7 24.5 231 23-291 105-342 (377)
317 PF08596 Lgl_C: Lethal giant l 97.7 0.039 8.4E-07 49.5 23.8 264 13-286 3-337 (395)
318 KOG2114 Vacuolar assembly/sort 97.6 0.012 2.6E-07 55.9 19.3 198 69-291 35-247 (933)
319 KOG3621 WD40 repeat-containing 97.6 0.0023 4.9E-08 59.3 13.9 208 54-291 32-248 (726)
320 TIGR03300 assembly_YfgL outer 97.6 0.048 1E-06 48.7 22.3 186 23-247 145-342 (377)
321 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.015 3.3E-07 41.6 14.9 103 14-130 2-110 (111)
322 smart00320 WD40 WD40 repeats. 97.5 0.00017 3.7E-09 40.2 4.0 35 203-241 6-40 (40)
323 KOG3617 WD40 and TPR repeat-co 97.4 0.013 2.7E-07 55.8 16.9 107 17-134 21-131 (1416)
324 KOG3621 WD40 repeat-containing 97.4 0.0013 2.7E-08 60.9 10.2 121 10-135 32-155 (726)
325 smart00320 WD40 WD40 repeats. 97.4 0.00063 1.4E-08 37.7 5.4 37 47-85 4-40 (40)
326 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.18 4E-06 44.4 21.8 199 16-245 109-332 (352)
327 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.067 1.5E-06 38.4 13.5 105 105-238 2-109 (111)
328 PF07433 DUF1513: Protein of u 97.0 0.21 4.5E-06 42.8 26.0 193 61-280 56-278 (305)
329 PF13360 PQQ_2: PQQ-like domai 96.9 0.2 4.3E-06 41.3 22.2 187 69-293 36-237 (238)
330 KOG4640 Anaphase-promoting com 96.9 0.0094 2E-07 54.7 9.8 94 56-159 21-115 (665)
331 PF08553 VID27: VID27 cytoplas 96.8 0.11 2.4E-06 50.3 16.7 101 177-286 544-646 (794)
332 PF08553 VID27: VID27 cytoplas 96.7 0.31 6.7E-06 47.4 19.2 136 30-192 501-646 (794)
333 PHA02713 hypothetical protein; 96.6 0.16 3.5E-06 47.9 16.6 63 175-245 464-535 (557)
334 KOG3617 WD40 and TPR repeat-co 96.6 0.0053 1.1E-07 58.2 6.2 75 212-293 62-137 (1416)
335 KOG4640 Anaphase-promoting com 96.5 0.017 3.6E-07 53.1 9.1 74 149-245 20-94 (665)
336 PF07433 DUF1513: Protein of u 96.5 0.44 9.5E-06 40.9 20.5 210 69-294 17-253 (305)
337 PF04053 Coatomer_WDAD: Coatom 96.5 0.28 6.1E-06 44.8 16.9 142 101-287 31-173 (443)
338 KOG4441 Proteins containing BT 96.5 0.79 1.7E-05 43.4 20.6 232 22-297 284-555 (571)
339 PF08450 SGL: SMP-30/Gluconola 96.4 0.44 9.6E-06 39.7 27.0 204 60-298 4-223 (246)
340 PF13360 PQQ_2: PQQ-like domai 96.3 0.49 1.1E-05 38.9 19.5 197 22-249 35-236 (238)
341 PF06977 SdiA-regulated: SdiA- 96.2 0.59 1.3E-05 39.1 25.2 207 50-281 16-244 (248)
342 PRK13616 lipoprotein LpqB; Pro 96.2 0.77 1.7E-05 43.6 18.3 174 101-294 348-532 (591)
343 PHA02713 hypothetical protein; 96.1 0.12 2.6E-06 48.8 12.9 152 22-199 351-539 (557)
344 COG0823 TolB Periplasmic compo 95.9 0.66 1.4E-05 42.2 15.8 166 101-295 191-366 (425)
345 PF04841 Vps16_N: Vps16, N-ter 95.7 1.6 3.4E-05 39.6 23.5 66 17-88 34-110 (410)
346 PF12894 Apc4_WD40: Anaphase-p 95.6 0.041 8.9E-07 33.0 4.9 30 258-287 11-41 (47)
347 PF03178 CPSF_A: CPSF A subuni 95.4 1.6 3.5E-05 38.0 23.7 191 23-240 42-262 (321)
348 PF08596 Lgl_C: Lethal giant l 95.3 2.1 4.5E-05 38.6 22.9 186 97-296 81-299 (395)
349 PF14870 PSII_BNR: Photosynthe 95.3 1.8 3.8E-05 37.4 28.6 251 9-300 14-273 (302)
350 KOG4441 Proteins containing BT 94.9 1.6 3.4E-05 41.5 15.6 187 22-243 332-546 (571)
351 PF12234 Rav1p_C: RAVE protein 94.9 0.86 1.9E-05 43.2 13.5 109 20-133 38-155 (631)
352 PRK13616 lipoprotein LpqB; Pro 94.9 3.7 8E-05 39.1 22.2 211 56-297 350-579 (591)
353 KOG2079 Vacuolar assembly/sort 94.9 0.13 2.7E-06 50.6 8.1 103 23-133 99-202 (1206)
354 PF12894 Apc4_WD40: Anaphase-p 94.7 0.12 2.7E-06 30.9 5.1 31 11-41 11-41 (47)
355 PF04053 Coatomer_WDAD: Coatom 94.4 4 8.6E-05 37.4 22.4 220 13-286 34-261 (443)
356 KOG2444 WD40 repeat protein [G 94.2 0.2 4.3E-06 40.7 6.7 65 23-89 70-134 (238)
357 PF15390 DUF4613: Domain of un 93.9 5.6 0.00012 37.2 16.2 121 149-286 56-185 (671)
358 PF03178 CPSF_A: CPSF A subuni 93.4 4.9 0.00011 35.0 22.9 138 79-244 62-203 (321)
359 PF12234 Rav1p_C: RAVE protein 93.3 5.1 0.00011 38.2 15.1 107 116-242 41-155 (631)
360 KOG2444 WD40 repeat protein [G 93.0 0.56 1.2E-05 38.2 7.3 103 176-287 71-177 (238)
361 KOG2395 Protein involved in va 93.0 4.2 9E-05 37.5 13.4 143 26-193 349-500 (644)
362 PHA03098 kelch-like protein; P 92.9 8.3 0.00018 36.2 18.7 69 22-95 294-373 (534)
363 KOG2395 Protein involved in va 92.9 3.2 7E-05 38.1 12.5 98 179-286 398-499 (644)
364 KOG2079 Vacuolar assembly/sort 92.7 0.54 1.2E-05 46.4 8.0 104 176-290 100-206 (1206)
365 PRK11138 outer membrane biogen 92.3 8.2 0.00018 34.7 20.8 94 176-285 295-392 (394)
366 PHA02790 Kelch-like protein; P 92.1 10 0.00022 35.3 18.4 104 22-134 271-384 (480)
367 PHA02790 Kelch-like protein; P 92.1 6.4 0.00014 36.5 14.3 107 21-140 317-428 (480)
368 PF10313 DUF2415: Uncharacteri 91.8 0.63 1.4E-05 27.2 4.6 33 211-244 2-34 (43)
369 PF10647 Gmad1: Lipoprotein Lp 91.8 7 0.00015 32.8 19.6 151 104-279 25-186 (253)
370 PRK11138 outer membrane biogen 91.8 9.4 0.0002 34.3 24.6 192 23-250 120-319 (394)
371 PF10313 DUF2415: Uncharacteri 91.5 0.76 1.6E-05 26.8 4.8 32 56-88 1-34 (43)
372 COG0823 TolB Periplasmic compo 91.1 12 0.00026 34.2 19.1 205 57-294 194-407 (425)
373 KOG3522 Predicted guanine nucl 91.0 0.92 2E-05 43.7 7.3 73 208-287 625-697 (925)
374 PF10647 Gmad1: Lipoprotein Lp 90.9 8.8 0.00019 32.3 17.8 141 13-161 25-177 (253)
375 PF00930 DPPIV_N: Dipeptidyl p 90.8 11 0.00024 33.3 24.8 104 20-133 1-130 (353)
376 PHA03098 kelch-like protein; P 90.6 9.6 0.00021 35.8 14.1 69 22-95 342-421 (534)
377 KOG3630 Nuclear pore complex, 90.6 2.8 6.1E-05 42.0 10.3 152 104-276 102-261 (1405)
378 PF07569 Hira: TUP1-like enhan 89.7 2.5 5.3E-05 34.7 8.2 71 225-296 22-103 (219)
379 PF12657 TFIIIC_delta: Transcr 89.6 4 8.7E-05 32.1 9.1 39 260-298 87-134 (173)
380 KOG1916 Nuclear protein, conta 89.4 1.4 2.9E-05 43.1 7.1 183 51-243 128-323 (1283)
381 PF15390 DUF4613: Domain of un 89.2 20 0.00043 33.8 15.9 156 55-243 19-186 (671)
382 PF00780 CNH: CNH domain; Int 89.2 12 0.00027 31.4 18.5 148 115-288 6-166 (275)
383 KOG2377 Uncharacterized conser 88.0 5.1 0.00011 36.3 9.2 114 10-129 65-180 (657)
384 PF05694 SBP56: 56kDa selenium 87.6 9.7 0.00021 34.5 10.8 103 31-136 220-344 (461)
385 KOG3630 Nuclear pore complex, 87.3 4.4 9.5E-05 40.8 9.1 141 13-159 102-253 (1405)
386 KOG2377 Uncharacterized conser 86.0 27 0.00059 31.9 13.2 145 75-242 39-184 (657)
387 PF08728 CRT10: CRT10; InterP 85.7 20 0.00044 34.8 12.5 111 22-133 113-245 (717)
388 COG3386 Gluconolactonase [Carb 85.1 24 0.00053 30.6 12.0 93 13-111 164-263 (307)
389 PF14870 PSII_BNR: Photosynthe 84.7 25 0.00055 30.4 25.5 172 83-284 126-301 (302)
390 PF00930 DPPIV_N: Dipeptidyl p 84.0 30 0.00064 30.6 26.1 227 15-279 104-348 (353)
391 PF08728 CRT10: CRT10; InterP 83.9 44 0.00096 32.6 17.6 159 23-192 49-245 (717)
392 PF00780 CNH: CNH domain; Int 83.7 25 0.00055 29.5 26.5 147 21-195 5-167 (275)
393 PF06977 SdiA-regulated: SdiA- 83.0 27 0.00058 29.3 23.3 165 7-192 17-200 (248)
394 PF10168 Nup88: Nuclear pore c 82.9 44 0.00094 32.8 13.7 42 207-249 144-185 (717)
395 PF14727 PHTB1_N: PTHB1 N-term 82.5 12 0.00026 34.0 9.3 76 225-300 37-125 (418)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 80.6 26 0.00056 31.9 10.6 36 7-42 303-338 (415)
397 PF05694 SBP56: 56kDa selenium 80.4 46 0.001 30.3 22.7 235 22-278 86-393 (461)
398 PF12657 TFIIIC_delta: Transcr 79.7 20 0.00043 28.1 8.8 35 210-244 86-122 (173)
399 COG5276 Uncharacterized conser 79.6 39 0.00085 29.1 22.1 154 56-245 87-243 (370)
400 PF10168 Nup88: Nuclear pore c 78.4 56 0.0012 32.1 12.8 80 102-195 84-181 (717)
401 PF07995 GSDH: Glucose / Sorbo 77.9 48 0.001 29.1 13.0 110 153-278 5-133 (331)
402 COG5167 VID27 Protein involved 77.1 16 0.00035 33.7 8.1 74 210-286 558-631 (776)
403 KOG1897 Damage-specific DNA bi 76.4 90 0.002 31.5 20.5 107 16-133 779-897 (1096)
404 PF11715 Nup160: Nucleoporin N 76.3 18 0.0004 34.1 9.0 69 22-90 157-251 (547)
405 PF04841 Vps16_N: Vps16, N-ter 75.3 65 0.0014 29.3 23.4 48 80-134 62-109 (410)
406 PRK02888 nitrous-oxide reducta 75.0 25 0.00053 33.6 9.1 98 184-288 295-405 (635)
407 TIGR02608 delta_60_rpt delta-6 73.8 11 0.00024 23.3 4.6 33 260-292 2-40 (55)
408 PF07569 Hira: TUP1-like enhan 71.5 21 0.00045 29.3 7.1 65 175-244 22-96 (219)
409 KOG4499 Ca2+-binding protein R 71.3 26 0.00056 29.1 7.3 60 17-78 217-276 (310)
410 PRK02888 nitrous-oxide reducta 71.2 28 0.00061 33.3 8.5 73 13-88 322-405 (635)
411 PRK13684 Ycf48-like protein; P 70.5 75 0.0016 27.9 23.6 81 209-296 214-296 (334)
412 TIGR02604 Piru_Ver_Nterm putat 70.2 80 0.0017 28.1 13.8 19 260-278 185-203 (367)
413 PF12768 Rax2: Cortical protei 69.9 70 0.0015 27.4 15.0 120 33-160 16-147 (281)
414 PF14761 HPS3_N: Hermansky-Pud 68.2 33 0.00072 27.9 7.3 50 24-76 29-78 (215)
415 KOG4460 Nuclear pore complex, 66.5 1.2E+02 0.0025 28.6 11.7 33 212-245 168-200 (741)
416 PF14727 PHTB1_N: PTHB1 N-term 66.3 1.1E+02 0.0023 28.0 22.6 154 69-243 37-204 (418)
417 KOG2247 WD40 repeat-containing 66.3 0.71 1.5E-05 41.8 -2.6 131 16-161 39-171 (615)
418 PF01731 Arylesterase: Arylest 65.7 33 0.00071 23.5 5.9 29 260-288 55-85 (86)
419 PF03088 Str_synth: Strictosid 65.5 18 0.0004 24.9 4.7 54 228-285 30-83 (89)
420 COG3490 Uncharacterized protei 65.4 89 0.0019 26.9 10.2 55 18-75 120-179 (366)
421 KOG1916 Nuclear protein, conta 65.3 8.4 0.00018 38.0 3.9 79 21-102 193-282 (1283)
422 PF07995 GSDH: Glucose / Sorbo 65.2 96 0.0021 27.2 27.1 72 210-281 253-329 (331)
423 TIGR02604 Piru_Ver_Nterm putat 64.5 90 0.002 27.8 10.3 18 260-277 125-142 (367)
424 KOG1896 mRNA cleavage and poly 64.3 89 0.0019 32.3 10.6 119 9-134 1095-1213(1366)
425 PF12768 Rax2: Cortical protei 64.2 93 0.002 26.7 10.5 74 9-85 34-121 (281)
426 PF12341 DUF3639: Protein of u 63.7 19 0.00042 18.6 3.8 25 103-131 2-26 (27)
427 COG3391 Uncharacterized conser 62.7 1.2E+02 0.0025 27.3 24.2 198 16-244 78-284 (381)
428 KOG3522 Predicted guanine nucl 62.4 57 0.0012 32.2 8.7 146 71-243 549-697 (925)
429 PF06433 Me-amine-dh_H: Methyl 60.8 1.2E+02 0.0026 26.8 10.6 55 34-90 268-323 (342)
430 KOG4499 Ca2+-binding protein R 60.0 1E+02 0.0022 25.7 10.9 92 15-111 161-262 (310)
431 PF07676 PD40: WD40-like Beta 59.1 29 0.00063 19.2 4.9 29 209-240 8-38 (39)
432 PRK13684 Ycf48-like protein; P 59.0 1.3E+02 0.0027 26.5 25.1 169 88-287 160-331 (334)
433 PF10214 Rrn6: RNA polymerase 58.5 2E+02 0.0044 28.6 17.8 76 211-289 147-234 (765)
434 PF14583 Pectate_lyase22: Olig 58.1 1.4E+02 0.0031 26.8 19.4 137 17-161 86-249 (386)
435 PF11715 Nup160: Nucleoporin N 55.8 85 0.0018 29.7 9.0 66 226-291 159-252 (547)
436 TIGR03606 non_repeat_PQQ dehyd 55.5 1.7E+02 0.0038 27.0 14.0 54 13-66 31-89 (454)
437 PF01436 NHL: NHL repeat; Int 51.2 34 0.00073 17.6 3.8 19 261-279 4-22 (28)
438 KOG4460 Nuclear pore complex, 50.2 1.5E+02 0.0032 27.9 8.9 78 58-137 106-201 (741)
439 TIGR03606 non_repeat_PQQ dehyd 49.0 2.2E+02 0.0048 26.3 12.5 47 175-221 41-90 (454)
440 KOG1900 Nuclear pore complex, 48.1 3.6E+02 0.0077 28.5 12.9 97 23-125 91-199 (1311)
441 PF10584 Proteasome_A_N: Prote 43.9 10 0.00022 18.9 0.4 8 265-272 7-14 (23)
442 TIGR03548 mutarot_permut cycli 41.8 2.3E+02 0.005 24.5 14.4 153 22-198 72-284 (323)
443 PF03088 Str_synth: Strictosid 40.7 61 0.0013 22.3 4.1 38 74-115 32-69 (89)
444 COG3204 Uncharacterized protei 39.7 2.5E+02 0.0055 24.3 17.2 119 9-134 83-210 (316)
445 KOG2247 WD40 repeat-containing 38.1 6.2 0.00013 36.1 -1.4 138 69-239 47-184 (615)
446 KOG3616 Selective LIM binding 37.3 91 0.002 30.6 5.8 32 209-244 14-45 (1636)
447 KOG4649 PQQ (pyrrolo-quinoline 36.9 2.7E+02 0.0058 23.8 14.9 103 69-195 23-125 (354)
448 PLN02153 epithiospecifier prot 35.5 3E+02 0.0065 24.0 15.1 156 22-198 85-289 (341)
449 KOG1896 mRNA cleavage and poly 35.3 5.6E+02 0.012 27.0 11.4 147 24-193 1047-1213(1366)
450 TIGR03075 PQQ_enz_alc_DH PQQ-d 35.1 2E+02 0.0042 27.2 7.8 48 226-275 473-520 (527)
451 TIGR03118 PEPCTERM_chp_1 conse 34.8 3.1E+02 0.0068 24.0 21.6 243 15-268 26-307 (336)
452 COG3204 Uncharacterized protei 34.3 3.1E+02 0.0067 23.8 22.1 201 52-279 82-304 (316)
453 PF14761 HPS3_N: Hermansky-Pud 33.3 2.7E+02 0.0059 22.8 16.5 58 70-131 29-92 (215)
454 COG3391 Uncharacterized conser 32.0 3.8E+02 0.0081 24.0 25.0 198 60-286 78-282 (381)
455 TIGR02276 beta_rpt_yvtn 40-res 31.8 94 0.002 17.0 4.4 22 268-289 1-24 (42)
456 PF10395 Utp8: Utp8 family; I 30.6 5.3E+02 0.011 25.3 15.7 33 11-43 129-161 (670)
457 PF14583 Pectate_lyase22: Olig 30.6 4.1E+02 0.0089 24.0 23.0 102 13-120 37-140 (386)
458 smart00564 PQQ beta-propeller 30.4 86 0.0019 16.2 3.5 19 227-245 8-26 (33)
459 KOG3616 Selective LIM binding 29.6 1.3E+02 0.0028 29.6 5.5 67 12-85 15-81 (1636)
460 KOG2280 Vacuolar assembly/sort 29.1 2.8E+02 0.006 27.4 7.5 49 185-244 64-113 (829)
461 cd00216 PQQ_DH Dehydrogenases 29.0 4.8E+02 0.01 24.3 21.9 25 227-251 303-327 (488)
462 PF09142 TruB_C: tRNA Pseudour 27.2 1.5E+02 0.0032 18.3 3.9 26 263-297 29-54 (56)
463 PF08954 DUF1900: Domain of un 26.5 2.5E+02 0.0054 21.1 5.7 78 216-300 17-96 (136)
464 PF13570 PQQ_3: PQQ-like domai 26.1 1.3E+02 0.0027 16.7 3.4 19 69-87 21-39 (40)
465 PF11635 Med16: Mediator compl 24.9 7E+02 0.015 24.9 20.9 69 210-282 260-345 (753)
466 PF14269 Arylsulfotran_2: Aryl 24.1 3.4E+02 0.0073 23.5 6.8 71 14-86 146-219 (299)
467 KOG4649 PQQ (pyrrolo-quinoline 23.3 4.8E+02 0.01 22.3 18.3 62 23-89 63-125 (354)
468 KOG2467 Glycine/serine hydroxy 23.1 59 0.0013 29.0 1.9 22 174-195 340-361 (477)
469 PLN00033 photosystem II stabil 22.5 5.9E+02 0.013 23.1 26.3 67 211-284 329-396 (398)
470 PF02333 Phytase: Phytase; In 21.9 6E+02 0.013 23.0 22.4 201 23-245 68-292 (381)
No 1
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-54 Score=336.75 Aligned_cols=297 Identities=59% Similarity=1.063 Sum_probs=267.6
Q ss_pred CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
|+.+.+..+|++.|.++..+..|++||+|+.|++|+|+.+.+... ..+.+|.||+++|+.++|.+|+.|.+||||+.||
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDg 80 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDG 80 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCc
Confidence 577888899999999999999999999999999999999865443 6788999999999999999999999999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
.|.||.-..+ +|........|...|++++|-|.+.|..|++++.||.|.+.+....+.+....+...|+..|++++|.|
T Consensus 81 kVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswap 159 (299)
T KOG1332|consen 81 KVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAP 159 (299)
T ss_pred eEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecC
Confidence 9999987654 788888888999999999999998899999999999999999887777777777779999999999999
Q ss_pred CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
...++.++.....++-++|+|||.|+.|+||+..++.|.+. ++|.+|.++|++++|.|..++-..+|||+|+||++.|
T Consensus 160 a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e--~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 160 ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE--RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cCCCccccccCcccccceeeccCCccceeeeecCCcchhhh--hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 98888777766666678999999999999999998877655 4589999999999999987665678999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecCC
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVEP 300 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~~ 300 (302)
|..+.+.++|+..++.+|...+|.++||+.|++|++++.| ++++|+.+.+|+|++++++.+
T Consensus 238 wt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~~~~ 299 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGEVSV 299 (299)
T ss_pred EEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccccCC
Confidence 9998777788888889999999999999999999999888 799999999999999988753
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-43 Score=288.80 Aligned_cols=253 Identities=28% Similarity=0.466 Sum_probs=211.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
.+.||..+|.++.|+|+|+.||+|+-|.++|+||+..+ .+..++++|..-|.+++|+|+ |+.||||+.||+|++||
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIRLWD 185 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCC--cchhhccccCCeEEEec
Confidence 36799999999999999999999999999999999764 467899999999999999975 99999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCC---CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPH---ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd---~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
..++.. ....+.+|...|++++|.|- ....+||+++.||.|+|||...... ...+ .+|+..|+|+.|.-+
T Consensus 186 pktg~~--~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~--~~~l-sgHT~~VTCvrwGG~-- 258 (480)
T KOG0271|consen 186 PKTGQQ--IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC--VRTL-SGHTASVTCVRWGGE-- 258 (480)
T ss_pred CCCCCc--ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE--EEEe-ccCccceEEEEEcCC--
Confidence 887653 45678999999999999763 2356899999999999999864322 2233 499999999999643
Q ss_pred CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC-----------C--------
Q 022111 163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG-----------L-------- 223 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-----------~-------- 223 (302)
.+|+||+.|++|++|+...+ .+.+.+.||..+|+.++.+.+.. .
T Consensus 259 -------------gliySgS~DrtIkvw~a~dG----~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 259 -------------GLIYSGSQDRTIKVWRALDG----KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred -------------ceEEecCCCceEEEEEccch----hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 58999999999999999876 56788999999999999883211 0
Q ss_pred -------------CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 224 -------------PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 224 -------------~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.+..++|||+|.++.+|+....+.+. .-+.+|...|..+.||||+++||+|+=| +|+||+...
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi--~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI--TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccch--hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 13469999999999999976543221 1236788889999999999999999888 799999754
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-42 Score=286.79 Aligned_cols=252 Identities=25% Similarity=0.398 Sum_probs=217.4
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
|-+.+|..+.|+.|++.|||||.+|.++||+... ...+.+|.||...|.++.|.|..++..+|||+.||++++|++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 5677899999999999999999999999999865 45678999999999999997642466899999999999999866
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
. +++..+.+|..+|..++|+|+ |.+|+|++.|.+-++||+++..... . ..+|...|.+++|.|++
T Consensus 251 e---~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~tWRlWD~~tk~ElL--~-QEGHs~~v~~iaf~~DG------- 315 (459)
T KOG0272|consen 251 E---TPLQDLEGHLARVSRVAFHPS--GKFLGTASFDSTWRLWDLETKSELL--L-QEGHSKGVFSIAFQPDG------- 315 (459)
T ss_pred C---cchhhhhcchhhheeeeecCC--CceeeecccccchhhcccccchhhH--h-hcccccccceeEecCCC-------
Confidence 4 478889999999999999998 8899999999999999998654322 2 24899999999999874
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
.+++|||.|..-+|||++++ .++-.+.||...|.+|+|+|+| .+|||||.|+++||||++....
T Consensus 316 -------SL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNG----y~lATgs~Dnt~kVWDLR~r~~- 379 (459)
T KOG0272|consen 316 -------SLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNG----YHLATGSSDNTCKVWDLRMRSE- 379 (459)
T ss_pred -------ceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCc----eEEeecCCCCcEEEeeeccccc-
Confidence 78999999999999999998 4556688999999999999995 8999999999999999987543
Q ss_pred eeeeeeccCCCcEEEEEEcc-CCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111 249 WEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKEAVDGEWQQVSVV 298 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~~~~~~~~~~~~~ 298 (302)
..+...|.+-|..|.|+| .|.+|++++-| +++||... .|.+++.+
T Consensus 380 --ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~---~~~~~ksL 426 (459)
T KOG0272|consen 380 --LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR---TWSPLKSL 426 (459)
T ss_pred --ceecccccchhhheEecccCCeEEEEcccCcceeeecCC---Ccccchhh
Confidence 234568888899999999 78999999988 79999753 57666543
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.8e-41 Score=284.23 Aligned_cols=247 Identities=27% Similarity=0.372 Sum_probs=214.7
Q ss_pred CcccccccccceeEEEEccC--CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 3 AQKIETGHEDTVHDVAMDFY--GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
..+++.||...|.++.|+|. +..||||+.||++++|++++. .++..+.+|...|..++|.|. |++|+|++.|.+
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~t 284 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPS--GKFLGTASFDST 284 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCC--Cceeeecccccc
Confidence 45678899999999999997 569999999999999999764 468889999999999999753 999999999999
Q ss_pred EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 160 (302)
-++||+++.. .+....+|...|.+|+|.|| |.+++||+.|..-+|||++++.+. ..+ .+|..+|.++.|+|+
T Consensus 285 WRlWD~~tk~---ElL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~RvWDlRtgr~i--m~L-~gH~k~I~~V~fsPN 356 (459)
T KOG0272|consen 285 WRLWDLETKS---ELLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGRVWDLRTGRCI--MFL-AGHIKEILSVAFSPN 356 (459)
T ss_pred hhhcccccch---hhHhhcccccccceeEecCC--CceeeccCccchhheeecccCcEE--EEe-cccccceeeEeECCC
Confidence 9999998764 34455689999999999998 779999999999999999976543 344 389999999999996
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw 240 (302)
|..|||||.|++++|||++.. .++.+.-+|.+-|..|.|+|+. +.+|+|+|.|.+++||
T Consensus 357 --------------Gy~lATgs~Dnt~kVWDLR~r----~~ly~ipAH~nlVS~Vk~~p~~---g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 357 --------------GYHLATGSSDNTCKVWDLRMR----SELYTIPAHSNLVSQVKYSPQE---GYFLVTASYDNTVKIW 415 (459)
T ss_pred --------------ceEEeecCCCCcEEEeeeccc----ccceecccccchhhheEecccC---CeEEEEcccCcceeee
Confidence 478999999999999999865 4466778999999999999965 6899999999999999
Q ss_pred EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
..+.-. ....+.+|.+.|.+++.+||+..+++++-| ++++|.
T Consensus 416 s~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 765421 134568999999999999999999999999 899995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=275.04 Aligned_cols=260 Identities=27% Similarity=0.402 Sum_probs=206.2
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC---CCCEEEEEeCCCeE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK---FGSILASCSYDGQV 81 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---~~~~l~s~s~D~~i 81 (302)
.+..+|+.-|.+++|+|||+.||||+.||+|++||...+. +....|.+|...|++++|.|-+ ...+|||+|.|+.+
T Consensus 151 ~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~v 229 (480)
T KOG0271|consen 151 FTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSV 229 (480)
T ss_pred eeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-cccccccCcccceeEEeecccccCCCccceecccCCCCE
Confidence 4456999999999999999999999999999999976543 3456899999999999997521 35689999999999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe----
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW---- 157 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~---- 157 (302)
+|||+..+ +++..+.+|+.+|+|+.|.-+ | ++++|+.|++|++|+...+... ..+ .+|...|+.++.
T Consensus 230 rIWd~~~~---~~~~~lsgHT~~VTCvrwGG~--g-liySgS~DrtIkvw~a~dG~~~--r~l-kGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 230 RIWDTKLG---TCVRTLSGHTASVTCVRWGGE--G-LIYSGSQDRTIKVWRALDGKLC--REL-KGHAHWVNHLALSTDY 300 (480)
T ss_pred EEEEccCc---eEEEEeccCccceEEEEEcCC--c-eEEecCCCceEEEEEccchhHH--Hhh-cccchheeeeeccchh
Confidence 99998654 477889999999999999754 2 7999999999999987542111 112 134434444333
Q ss_pred ---------------------------------------------------CCCCCCC----------ceeecccCCCce
Q 022111 158 ---------------------------------------------------APAMAPG----------ALVGLGLLDPVQ 176 (302)
Q Consensus 158 ---------------------------------------------------~~~~~~~----------~~~~~~~~~~~~ 176 (302)
.|....- -+..+.++++++
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc
Confidence 3321110 011123456789
Q ss_pred eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 256 (302)
++||++.|+.|++||.+++ +.+.+|.||-+.|+.++|+.|. +.|+|||.|.+|++|++++.+- ..-+.+
T Consensus 381 ~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqvawsaDs----RLlVS~SkDsTLKvw~V~tkKl---~~DLpG 449 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQVAWSADS----RLLVSGSKDSTLKVWDVRTKKL---KQDLPG 449 (480)
T ss_pred EEEEeecccceeeeeCCCc----chhhhhhhccceeEEEEeccCc----cEEEEcCCCceEEEEEeeeeee---cccCCC
Confidence 9999999999999999998 4677899999999999999984 7899999999999999986431 233578
Q ss_pred CCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
|.++|+++.|+|||.++++|+.| -++||.
T Consensus 450 h~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 450 HADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceEEEEEecCCCceeecCCCceEEEeec
Confidence 89999999999999999999999 589995
No 6
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-38 Score=250.33 Aligned_cols=251 Identities=30% Similarity=0.533 Sum_probs=213.1
Q ss_pred CcccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecC-CCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 3 AQKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSN-SASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
..+..++|++.+..++|+|- |..|||||.|+.||+|+..+ ....+...+ .+|+..|+.++|+|. |++||++|.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCC--CcEEEEeeccc
Confidence 34667899999999999997 78999999999999999863 223344444 469999999999864 89999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
++.||.-. ...+.++.++.+|...|.|++|+++ |.+||+|+.|+.|-+|....+..+....+.+.|++.|..+.|.|
T Consensus 84 t~~Iw~k~-~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 84 TVVIWKKE-DGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred eEEEeecC-CCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 99999754 3467889999999999999999997 77999999999999999987777777666679999999999999
Q ss_pred CCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
.+ .+|+|||.|++|++|+-. ...| .+.+++.+|...|.+++|+|.| ..|+++++|++++
T Consensus 161 t~--------------dlL~S~SYDnTIk~~~~~~dddW--~c~~tl~g~~~TVW~~~F~~~G----~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 161 TE--------------DLLFSCSYDNTIKVYRDEDDDDW--ECVQTLDGHENTVWSLAFDNIG----SRLVSCSDDGTVS 220 (312)
T ss_pred Cc--------------ceeEEeccCCeEEEEeecCCCCe--eEEEEecCccceEEEEEecCCC----ceEEEecCCcceE
Confidence 75 789999999999999977 4444 4678899999999999999985 7899999999999
Q ss_pred EEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
||.... .+...++.+++.++|. + ..||+++.| .|+|++..
T Consensus 221 Iw~~~~-------~~~~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 221 IWRLYT-------DLSGMHSRALYDVPWD-N-GVIASGGGDDAIRLFKES 261 (312)
T ss_pred eeeecc-------CcchhcccceEeeeec-c-cceEeccCCCEEEEEEec
Confidence 997542 2234566789999998 4 467777777 89999975
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-37 Score=245.67 Aligned_cols=252 Identities=25% Similarity=0.363 Sum_probs=209.2
Q ss_pred cccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCC---ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 4 QKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSA---SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
..++.+|++.|++++..+. .+.+++++.|+++.+|++.... +.+.+.+.||+..|..+..+++ |++.+|+|.|+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~ 85 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDG 85 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccc
Confidence 3457799999999998876 4789999999999999996533 4557889999999999998764 89999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
++++||+..+ ++...|.+|..-|.+++|+|| ..++++|+.|++|++|+.-.. ......+..+...|+++.|+|
T Consensus 86 ~lrlWDl~~g---~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTiklwnt~g~--ck~t~~~~~~~~WVscvrfsP 158 (315)
T KOG0279|consen 86 TLRLWDLATG---ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIKLWNTLGV--CKYTIHEDSHREWVSCVRFSP 158 (315)
T ss_pred eEEEEEecCC---cEEEEEEecCCceEEEEecCC--CceeecCCCcceeeeeeeccc--EEEEEecCCCcCcEEEEEEcC
Confidence 9999999876 366789999999999999999 458999999999999987532 232332323477899999999
Q ss_pred CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
... +-.|+++|.|++|++||+++. +....+.||.+.|+.+.+|||| ...++|+.||.+.+
T Consensus 159 ~~~------------~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDG----slcasGgkdg~~~L 218 (315)
T KOG0279|consen 159 NES------------NPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDG----SLCASGGKDGEAML 218 (315)
T ss_pred CCC------------CcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCC----CEEecCCCCceEEE
Confidence 742 357999999999999999875 3456788999999999999996 78999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
||++..+. ....++...|.+++|+|+.-.|+.+-..+|+||+...
T Consensus 219 wdL~~~k~----lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 219 WDLNEGKN----LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLES 263 (315)
T ss_pred EEccCCce----eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccc
Confidence 99986532 2235677889999999998777777666899999754
No 8
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-38 Score=281.37 Aligned_cols=242 Identities=28% Similarity=0.433 Sum_probs=207.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-----------------------------ceEEEEecCcccCeEEE
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-----------------------------SQHLATLKGHRGPVWQV 61 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-----------------------------~~~~~~~~~h~~~v~~v 61 (302)
...++++.|++|+++||.|..|..|++|.+.... .....++.||+++|+..
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3478999999999999999999999999985211 01134578999999999
Q ss_pred EeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee
Q 022111 62 AWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT 141 (302)
Q Consensus 62 ~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~ 141 (302)
+|+|+ .++|++||+|+++|+|.+.+. .++-.+.+|..||.++.|+|. |.++||++.|++-++|...... +
T Consensus 458 sFsPd--~rfLlScSED~svRLWsl~t~---s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d~~~---P 527 (707)
T KOG0263|consen 458 SFSPD--RRFLLSCSEDSSVRLWSLDTW---SCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTDHNK---P 527 (707)
T ss_pred eeccc--ccceeeccCCcceeeeecccc---eeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecccCC---c
Confidence 99875 689999999999999998664 577788999999999999997 8999999999999999876432 2
Q ss_pred eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111 142 TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221 (302)
Q Consensus 142 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 221 (302)
.++-.+|...|.|+.|.|+. .++++||.|.+||+||+.++ ..++.|.||+++|.+|+|||+|
T Consensus 528 lRifaghlsDV~cv~FHPNs--------------~Y~aTGSsD~tVRlWDv~~G----~~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNS--------------NYVATGSSDRTVRLWDVSTG----NSVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred hhhhcccccccceEEECCcc--------------cccccCCCCceEEEEEcCCC----cEEEEecCCCCceEEEEEcCCC
Confidence 33445899999999999964 79999999999999999988 4577889999999999999985
Q ss_pred CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
.+|++|++|+.|+|||+..... ...+.+|.+.|.+++||.||.+||+++.| +|++||..
T Consensus 590 ----r~LaSg~ed~~I~iWDl~~~~~---v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 590 ----RYLASGDEDGLIKIWDLANGSL---VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred ----ceEeecccCCcEEEEEcCCCcc---hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 8899999999999999976321 23346788899999999999999999999 79999973
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-36 Score=242.75 Aligned_cols=248 Identities=21% Similarity=0.298 Sum_probs=197.3
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
+++.+.||+-.|..+..++||++++|++.|+++|+||+..+ +....|-||...|.+++|+++ +..++|||.|++|+
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkTik 130 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKTIK 130 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCC--CceeecCCCcceee
Confidence 45668899999999999999999999999999999999764 556788999999999999875 68999999999999
Q ss_pred EEEcCCCCceeEEEEecCC--CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDH--KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h--~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 160 (302)
+|+.-.. +..+...+ .+-|+|+.|+|+....++++++.|++|++||++.- +......+|...++.+.++|+
T Consensus 131 lwnt~g~----ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 131 LWNTLGV----CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeeeccc----EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc---chhhccccccccEEEEEECCC
Confidence 9997543 44444433 78999999999965668999999999999998742 222222378888999999997
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw 240 (302)
+ .++++|+.|+.+.+||++.+. +++. -+|...|++++|+|+ .+.+....+..|+||
T Consensus 204 G--------------slcasGgkdg~~~LwdL~~~k----~lys-l~a~~~v~sl~fspn-----rywL~~at~~sIkIw 259 (315)
T KOG0279|consen 204 G--------------SLCASGGKDGEAMLWDLNEGK----NLYS-LEAFDIVNSLCFSPN-----RYWLCAATATSIKIW 259 (315)
T ss_pred C--------------CEEecCCCCceEEEEEccCCc----eeEe-ccCCCeEeeEEecCC-----ceeEeeccCCceEEE
Confidence 4 789999999999999999873 3344 358889999999998 455566667779999
Q ss_pred EeccCCcceeeeeeccC-------CC-cEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 241 TCAKEGEQWEGRVLKDF-------KT-PVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 241 d~~~~~~~~~~~~~~~~-------~~-~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|+....-.. .+..++ .. ...+++||+||.-|-++..+ .|++|+..
T Consensus 260 dl~~~~~v~--~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLESKAVVE--ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccchhhhh--hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 987642110 111111 12 24689999999999999887 69999874
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=243.16 Aligned_cols=254 Identities=19% Similarity=0.326 Sum_probs=208.4
Q ss_pred CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
|..++++.||...|+++.|++|.++|+|++.||.+.|||.-+....+ .+.--+.-|-..+|+|. |+.+|.|+-|..
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--aipl~s~WVMtCA~sPS--g~~VAcGGLdN~ 120 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--AIPLPSSWVMTCAYSPS--GNFVACGGLDNK 120 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--EEecCceeEEEEEECCC--CCeEEecCcCce
Confidence 45567899999999999999999999999999999999975543333 34445667888999864 899999999999
Q ss_pred EEEEEcCCC--C-ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 81 VIIWKEGNQ--N-DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 81 i~iwd~~~~--~-~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
+.||++... . .......+.+|.+.+.|+.|-+| + .|+|++.|.++.+||++++ .....+. +|...|-++..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~-~ilT~SGD~TCalWDie~g--~~~~~f~-GH~gDV~slsl 194 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--N-HILTGSGDMTCALWDIETG--QQTQVFH-GHTGDVMSLSL 194 (343)
T ss_pred eEEEecccccccccceeeeeecCccceeEEEEEcCC--C-ceEecCCCceEEEEEcccc--eEEEEec-CCcccEEEEec
Confidence 999998633 1 11234568899999999999875 2 6999999999999999865 3344554 89999999999
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i 237 (302)
+|.. ++.++||+.|++.+|||++.+ .+.++|.||++-|++|+|.|++ .-|++||+|+++
T Consensus 195 ~p~~-------------~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G----~afatGSDD~tc 253 (343)
T KOG0286|consen 195 SPSD-------------GNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSG----DAFATGSDDATC 253 (343)
T ss_pred CCCC-------------CCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCC----CeeeecCCCcee
Confidence 8842 478999999999999999987 5788999999999999999996 779999999999
Q ss_pred EEEEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 238 VIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 238 ~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|+||+|...+. ... ......+|.+++||..|++|-+|..| ++.+||.-
T Consensus 254 RlyDlRaD~~~--a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtl 303 (343)
T KOG0286|consen 254 RLYDLRADQEL--AVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTL 303 (343)
T ss_pred EEEeecCCcEE--eeeccCcccCCceeEEEcccccEEEeeecCCceeEeecc
Confidence 99999864221 111 12224579999999999999998888 89999964
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.3e-36 Score=269.10 Aligned_cols=205 Identities=26% Similarity=0.450 Sum_probs=181.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++.||.++|+.++|+|+.++|+++|.|++||||.+.+. .++...+||..+|+.++|+|- |-++||+|.|++.++|.
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWS 521 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeee
Confidence 46799999999999999999999999999999999763 456677899999999999853 89999999999999998
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
.... .+...|.+|..-|.|+.|+|+ ..++++||.|.+|++||+.++.... .+ .+|..+|.+++|+|.
T Consensus 522 ~d~~---~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRlWDv~~G~~VR--iF-~GH~~~V~al~~Sp~----- 588 (707)
T KOG0263|consen 522 TDHN---KPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRLWDVSTGNSVR--IF-TGHKGPVTALAFSPC----- 588 (707)
T ss_pred cccC---CchhhhcccccccceEEECCc--ccccccCCCCceEEEEEcCCCcEEE--Ee-cCCCCceEEEEEcCC-----
Confidence 7543 467788999999999999998 4599999999999999998765543 33 389999999999996
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
|.+|+||+.|+.|++||+.++ ..+..+.+|++.|.++.|+.++ ..||+|+.|.+|++||+..
T Consensus 589 ---------Gr~LaSg~ed~~I~iWDl~~~----~~v~~l~~Ht~ti~SlsFS~dg----~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 589 ---------GRYLASGDEDGLIKIWDLANG----SLVKQLKGHTGTIYSLSFSRDG----NVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------CceEeecccCCcEEEEEcCCC----cchhhhhcccCceeEEEEecCC----CEEEecCCCCeEEEEEchh
Confidence 489999999999999999887 4556788999999999999995 7899999999999999865
No 12
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-35 Score=229.62 Aligned_cols=249 Identities=23% Similarity=0.373 Sum_probs=200.2
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
..-|+.+.+.||++.||+++ ...||+||+.+....++.++.+|...|..+.|.. +|+.++|||+||++||||++..
T Consensus 40 dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~--dgrWMyTgseDgt~kIWdlR~~- 115 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC--DGRWMYTGSEDGTVKIWDLRSL- 115 (311)
T ss_pred ccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee--cCeEEEecCCCceEEEEeccCc-
Confidence 45789999999999999876 5679999998766557889999999999999975 4999999999999999999874
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
..+....|..+|+++..+|++. .|++|..++.|++||+...... ..+.......+.++...|+
T Consensus 116 ---~~qR~~~~~spVn~vvlhpnQt--eLis~dqsg~irvWDl~~~~c~--~~liPe~~~~i~sl~v~~d---------- 178 (311)
T KOG0315|consen 116 ---SCQRNYQHNSPVNTVVLHPNQT--ELISGDQSGNIRVWDLGENSCT--HELIPEDDTSIQSLTVMPD---------- 178 (311)
T ss_pred ---ccchhccCCCCcceEEecCCcc--eEEeecCCCcEEEEEccCCccc--cccCCCCCcceeeEEEcCC----------
Confidence 2333344889999999999853 7999999999999999864321 1111122345777776665
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCcc--ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
+..|+.+...|+.++|++..... .+..+..+..|...|..+.+|||+ ++||++|.|++++||+.+.- .
T Consensus 179 ----gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~----k~lat~ssdktv~iwn~~~~--~ 248 (311)
T KOG0315|consen 179 ----GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV----KYLATCSSDKTVKIWNTDDF--F 248 (311)
T ss_pred ----CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC----cEEEeecCCceEEEEecCCc--e
Confidence 47888899999999999976432 234456688999999999999996 78999999999999998753 1
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG 290 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~ 290 (302)
.....+.++...+|.++||.||+||++|++| .+++|++...+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 1223457788899999999999999999999 79999986544
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=6.4e-35 Score=247.92 Aligned_cols=242 Identities=29% Similarity=0.489 Sum_probs=205.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND 91 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 91 (302)
..|++++|+.+|..||+|+.||.+|||+... ..+.++.-|+++|.++.|+. .|++|++++.|+++.+||..++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G---~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g-- 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG---NLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTG-- 308 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCc---hhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCc--
Confidence 5799999999999999999999999999754 45677888999999999974 4899999999999999998665
Q ss_pred eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeeccc
Q 022111 92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGL 171 (302)
Q Consensus 92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 171 (302)
+..+.+..|..+-..+.|-.+ ..+++++.|+.|++|.+....+. ..+. +|..+|.++.|+|.+
T Consensus 309 -~~~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~--~t~~-GH~g~V~alk~n~tg---------- 371 (524)
T KOG0273|consen 309 -TVKQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPV--KTFI-GHHGEVNALKWNPTG---------- 371 (524)
T ss_pred -eEEEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcc--eeee-cccCceEEEEECCCC----------
Confidence 355677888888788999754 36999999999999998765443 2333 799999999999974
Q ss_pred CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC-----CccEEEEEecCCeEEEEEeccCC
Q 022111 172 LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL-----PKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 172 ~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-----~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
.+|+||+.|++++||.+... .+...+.+|...|..+.|+|++.. .+..+++++.|+++++||+....
T Consensus 372 ----~LLaS~SdD~TlkiWs~~~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv 443 (524)
T KOG0273|consen 372 ----SLLASCSDDGTLKIWSMGQS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV 443 (524)
T ss_pred ----ceEEEecCCCeeEeeecCCC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc
Confidence 79999999999999998765 467788999999999999998753 45789999999999999998642
Q ss_pred cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
. .-.+.+|..+|++++|||+|++||+|+.| .|.+|....
T Consensus 444 ~---i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 444 P---IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred e---eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 1 12346888999999999999999999999 699999764
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-34 Score=228.63 Aligned_cols=249 Identities=29% Similarity=0.529 Sum_probs=207.9
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
..+|+..|++++|+|.|++||+||-|.++-||.-.....+++.++.||+..|.+++|+++ |.+||+|+.|+.+=||.+
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWEI 134 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEEe
Confidence 458999999999999999999999999999998766667889999999999999999864 899999999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
.......+...++.|..-|.-+.|+|.. .+|++++.|++|++|+-..+..|.......+|...|.++.|.+.
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~------ 206 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNI------ 206 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCC------
Confidence 8777788999999999999999999974 38999999999999987655567765544588889999999875
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
|.+|++|+.|++++||...... ...|+..++.+.|. + ..|+|++.|..|++|.-....
T Consensus 207 --------G~rl~s~sdD~tv~Iw~~~~~~--------~~~~sr~~Y~v~W~-~-----~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 207 --------GSRLVSCSDDGTVSIWRLYTDL--------SGMHSRALYDVPWD-N-----GVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred --------CceEEEecCCcceEeeeeccCc--------chhcccceEeeeec-c-----cceEeccCCCEEEEEEecCCC
Confidence 4789999999999999876421 13478889999998 4 369999999999999865431
Q ss_pred cc--ee--eeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeec
Q 022111 247 EQ--WE--GRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 247 ~~--~~--~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~ 287 (302)
.. +. ......|+..|++++|+|. .++|+++++| .|++|...
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 11 1112356678999999995 6888899888 69999853
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.3e-35 Score=236.54 Aligned_cols=248 Identities=25% Similarity=0.417 Sum_probs=202.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
.+.||++.|+.+.|+|+|.+|||||.|..|.||++... .+...++++|+++|-.+.|..+ +..|++||.|++++.||
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKTVRGWD 118 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeeeccccceeEeeeeccC--CCEEEEecCCceEEEEe
Confidence 46799999999999999999999999999999997543 4566788999999999999764 78999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCC-cEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~-~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
++++. ....+++|..-|+++. |...| .++.+|++|++++|||+++.....+. ....+++++.|..+
T Consensus 119 ~~tG~---~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~----~~kyqltAv~f~d~---- 185 (338)
T KOG0265|consen 119 AETGK---RIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF----ENKYQLTAVGFKDT---- 185 (338)
T ss_pred cccce---eeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc----ccceeEEEEEeccc----
Confidence 98873 6778889999999987 44333 57889999999999999865433211 23456888888754
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+.++++|+-|+.|++||++.+ +....+.||.++|+.+..+|++ .++.+-++|.++++||++-
T Consensus 186 ----------s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~g----s~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 186 ----------SDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYG----SFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ----------ccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCC----CccccccccceEEEEEecc
Confidence 478999999999999999876 5678899999999999999986 7899999999999999974
Q ss_pred CC-cceeeeee----ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 245 EG-EQWEGRVL----KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 245 ~~-~~~~~~~~----~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
-. ..+...+. ..++.....++|||+++.+.+++.| .+++|+..
T Consensus 248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~ 296 (338)
T KOG0265|consen 248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTT 296 (338)
T ss_pred cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecc
Confidence 21 11111111 2334457789999999999999999 79999975
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=244.32 Aligned_cols=258 Identities=27% Similarity=0.419 Sum_probs=217.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
.+.||++.|.+++|+..|++||+++.|-.+++||+... .+++..+.+|+..|.+++|-|. |++|+||+.|.+|+.|+
T Consensus 145 ~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 145 SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEe
Confidence 46799999999999999999999999999999998653 4567888999999999999764 79999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+.++ -+++++.+|.+-|.-++.+.| |.++|+|+.|.++++|-+.+.... ..++ .|+.+|.+++|.|......
T Consensus 222 ~~tg---~cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl~vW~~~t~~~k--~~lR-~hEh~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 222 CDTG---YCVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTLRVWVVATKQCK--AELR-EHEHPVECIAWAPESSYPS 293 (406)
T ss_pred cccc---eeEEeccCchHhEEEEEecCC--eeEEEecCCCceEEEEEeccchhh--hhhh-ccccceEEEEecccccCcc
Confidence 9876 488999999999999999877 889999999999999987654221 2333 7888999999998654333
Q ss_pred ee-ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 166 LV-GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 166 ~~-~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+. +.+..+.+..+++++.|++||+||+.++ .|+.++.||.+||.+++|+|-| ++|+|+.+|+++|+||++.
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~G----kyi~ScaDDktlrvwdl~~ 365 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPGG----KYILSCADDKTLRVWDLKN 365 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEecccceeeeeEEcCCC----eEEEEEecCCcEEEEEecc
Confidence 22 2233344678999999999999999988 6888999999999999999985 8899999999999999975
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
. .....+..|..-+.++.|.-+-.++++|+=| .+++|.
T Consensus 366 ~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 366 L---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred c---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 3 2233445666779999999888899999888 899995
No 17
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=227.31 Aligned_cols=285 Identities=34% Similarity=0.663 Sum_probs=220.7
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC--CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS--ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
+-+..+|.+-|+++.|++.|+++|+|+.|++|+|||.... +..+-..-+.|++.|..|.|.+|..|+.||+||.|+++
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 3346689999999999999999999999999999996433 34445567889999999999999899999999999999
Q ss_pred EEEEcC------CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC---eee-eee------c
Q 022111 82 IIWKEG------NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG---WDT-TRI------D 145 (302)
Q Consensus 82 ~iwd~~------~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~---~~~-~~~------~ 145 (302)
.||.-. .+.+|....++......|+++.|.|..-|..+|+++.||.+|||+.-.... |.+ .++ .
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999741 113566677788888999999999998899999999999999998754322 221 111 1
Q ss_pred ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC-----CcEEEEEEecCccccccccccccCCCceeEEEeeCC
Q 022111 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD-----NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN 220 (302)
Q Consensus 146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~ 220 (302)
..+.....|+.|+|.... ...||.|+.+ +.++||.-.++..+...+.++.+|+++|++|+|.|+
T Consensus 166 ~~~~~~~~CvsWn~sr~~-----------~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMH-----------EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred ccccCcceEEeecccccc-----------CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 124556789999875321 1345555544 378999876654333445677899999999999998
Q ss_pred CCCCccEEEEEecCCeEEEEEeccCC-----------c---ce---eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceE
Q 022111 221 LGLPKSTIASASQDGTVVIWTCAKEG-----------E---QW---EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVT 282 (302)
Q Consensus 221 ~~~~~~~l~s~s~D~~i~iwd~~~~~-----------~---~~---~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~ 282 (302)
-+.....||+++.|| |+||+++... . .. ....+.+|.++||.++|+-.|.+|+++++| .++
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 766667899999999 9999997310 0 00 011235788899999999999999999999 699
Q ss_pred EeeecCCceEEEeeecCC
Q 022111 283 LWKEAVDGEWQQVSVVEP 300 (302)
Q Consensus 283 ~w~~~~~~~~~~~~~~~~ 300 (302)
+|+..-+.+|.+..++.-
T Consensus 314 LWkany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 314 LWKANYNNLWKCTSVLKA 331 (361)
T ss_pred ehhhhhhhhheeeeEEec
Confidence 999988889998887653
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.4e-35 Score=248.00 Aligned_cols=249 Identities=22% Similarity=0.412 Sum_probs=207.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+++.|..+|+++.|+.++.+++||+.+|.|++|+..-. .+..+.+|. ..|++++|+|. ...++|||.|++|+||
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn---nVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiW 207 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN---NVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIW 207 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh---hhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEE
Confidence 46789999999999999999999999999999987532 344555655 88999999874 4678999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|..... +...+.+|.--|++++|+|.. -+|++|+.|+.|++||-+++.+.. .+ ..|...|..+.|+|++
T Consensus 208 df~~~k---ee~vL~GHgwdVksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~--tl-h~HKntVl~~~f~~n~--- 276 (464)
T KOG0284|consen 208 DFRMPK---EERVLRGHGWDVKSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLA--TL-HGHKNTVLAVKFNPNG--- 276 (464)
T ss_pred eccCCc---hhheeccCCCCcceeccCCcc--ceeEEccCCceeEeecCCCcchhh--hh-hhccceEEEEEEcCCC---
Confidence 986553 345678999999999999984 379999999999999988765432 23 3789999999999864
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.+|+|+|.|..++++|++. ++.+.++.+|+..|+++.|+|-. +..|++|+.||.|..|.+..
T Consensus 277 -----------N~Llt~skD~~~kv~DiR~----mkEl~~~r~Hkkdv~~~~WhP~~---~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 277 -----------NWLLTGSKDQSCKVFDIRT----MKELFTYRGHKKDVTSLTWHPLN---ESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred -----------CeeEEccCCceEEEEehhH----hHHHHHhhcchhhheeecccccc---ccceeeccCCCceEEEeccc
Confidence 7999999999999999984 35677889999999999999963 57899999999999999873
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG 290 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~ 290 (302)
+.. ...+...|...||+++|+|=|.+|++|+.| ++++|..+..+
T Consensus 339 ~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~ 383 (464)
T KOG0284|consen 339 EEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPG 383 (464)
T ss_pred ccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeeccCCCC
Confidence 321 123345677889999999999999999888 79999865543
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.1e-35 Score=245.86 Aligned_cols=239 Identities=23% Similarity=0.408 Sum_probs=199.3
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
+-+|..++|.|+|+.|++|++.|.+.||+...-..+ ..+.+|..+|+++.|+++ +.+++||..+|.|++|+.+-++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--tilQaHDs~Vr~m~ws~~--g~wmiSgD~gG~iKyWqpnmnn 171 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TILQAHDSPVRTMKWSHN--GTWMISGDKGGMIKYWQPNMNN 171 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHhhhhcccceeEEEccC--CCEEEEcCCCceEEecccchhh
Confidence 347889999999999999999999999986432222 235789999999999974 8999999999999999875442
Q ss_pred ceeEEEEecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 91 DWTQAHTFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 91 ~~~~~~~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
++.+..| ...|++++|+|++. .+++|++|++|+|||.....+. ..+ .+|...|+++.|.|..
T Consensus 172 ----Vk~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee--~vL-~GHgwdVksvdWHP~k-------- 234 (464)
T KOG0284|consen 172 ----VKIIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEE--RVL-RGHGWDVKSVDWHPTK-------- 234 (464)
T ss_pred ----hHHhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchh--hee-ccCCCCcceeccCCcc--------
Confidence 3444444 59999999999743 7999999999999998754321 233 4899999999999975
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
.+|||+|.|+.|++||.+++ .|+.++.+|+..|..+.|+|++ ++|+|+|.|..++++|++..++.
T Consensus 235 ------gLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~----N~Llt~skD~~~kv~DiR~mkEl- 299 (464)
T KOG0284|consen 235 ------GLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNG----NWLLTGSKDQSCKVFDIRTMKEL- 299 (464)
T ss_pred ------ceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCC----CeeEEccCCceEEEEehhHhHHH-
Confidence 68999999999999999988 6888999999999999999995 88999999999999999854432
Q ss_pred eeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeec
Q 022111 250 EGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~ 287 (302)
....+|+..|++++|+|- -.+|++|+.| .|..|...
T Consensus 300 --~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 --FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred --HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 234678889999999994 4788888888 79999865
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-34 Score=235.82 Aligned_cols=253 Identities=23% Similarity=0.376 Sum_probs=212.7
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
..+.+.||+.+|+.+-|+|+--.+++++.|++|++||..++ +....|+||...|..|+|.. .|++||+|+.|-.++
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a--~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDA--SGKYLATCSSDLSAK 175 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEec--CccEEEecCCccchh
Confidence 34556789999999999999999999999999999998764 44678999999999999975 389999999999999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
+||.... ..+++...+|...|.++.|-|. |.++++++.|.+|+.|+..++ +....+. +|...|..+.-+.
T Consensus 176 LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg--~cv~t~~-~h~ewvr~v~v~~--- 245 (406)
T KOG0295|consen 176 LWDFDTF--FRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTG--YCVKTFP-GHSEWVRMVRVNQ--- 245 (406)
T ss_pred heeHHHH--HHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccc--eeEEecc-CchHhEEEEEecC---
Confidence 9998653 3456677789999999999997 679999999999999998754 4444554 8888888877554
Q ss_pred CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC-----------CccEEEEE
Q 022111 163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL-----------PKSTIASA 231 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-----------~~~~l~s~ 231 (302)
+|..+|+|+.|.+|++|=+.+. .|...+.+|+.+|.|++|-|...+ .+..++++
T Consensus 246 -----------DGti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 246 -----------DGTIIASCSNDQTLRVWVVATK----QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred -----------CeeEEEecCCCceEEEEEeccc----hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 3689999999999999998765 567788999999999999985432 12589999
Q ss_pred ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 232 SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|.|++||+||+.... ..-.+.+|.+.|.+++|+|.|+||++..+| ++++||..
T Consensus 311 SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 999999999998642 123357889999999999999999999888 79999986
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-34 Score=238.34 Aligned_cols=239 Identities=21% Similarity=0.430 Sum_probs=195.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++.||++.|.++. .+.+.++||+.|.+|++||+.+ ++++.++-+|...|..+.|+ ..+++|||.|+++.+||
T Consensus 232 ~L~GHtGSVLCLq--yd~rviisGSSDsTvrvWDv~t--ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 232 ILTGHTGSVLCLQ--YDERVIVSGSSDSTVRVWDVNT--GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWD 303 (499)
T ss_pred hhhcCCCcEEeee--ccceEEEecCCCceEEEEeccC--CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEe
Confidence 4679999997665 5578999999999999999965 56788889999999999997 35899999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+......++...+.+|...|+.+.|. .+++++++.|++|++|+..+. .......+|..+|.++.+.
T Consensus 304 m~sps~it~rrVLvGHrAaVNvVdfd----~kyIVsASgDRTikvW~~st~---efvRtl~gHkRGIAClQYr------- 369 (499)
T KOG0281|consen 304 MASPTDITLRRVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWSTSTC---EFVRTLNGHKRGIACLQYR------- 369 (499)
T ss_pred ccCchHHHHHHHHhhhhhheeeeccc----cceEEEecCCceEEEEeccce---eeehhhhcccccceehhcc-------
Confidence 97765555667788999999999996 348999999999999998643 2223334898888888763
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
+++++||+.|.+|++||+..+ .|++.+.||++-|+|+.|.. +.|+||+.||+|||||+...
T Consensus 370 ---------~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRciRFd~------krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 370 ---------DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDN------KRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ---------CeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhheeecC------ceeeeccccceEEEEecccc
Confidence 589999999999999999988 68889999999999999974 56999999999999999764
Q ss_pred Cccee------eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 246 GEQWE------GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 246 ~~~~~------~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
..+.. ...+.+|.+.|..+.| |..+|++.+++ .|.+|+..
T Consensus 431 ldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 431 LDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred cCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence 32211 1123567788999999 55566666666 89999974
No 22
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-33 Score=251.73 Aligned_cols=252 Identities=22% Similarity=0.339 Sum_probs=207.0
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
|..|.++|..++|+|++.+++|||+|.+|++|+..+ .+++.++.||.+.|+.+.|.+. =.+++|+|.|.+|+||+.
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNW 122 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEec
Confidence 678999999999999999999999999999999865 5688999999999999999764 368999999999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC-------CC--------------e---e--
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD-------GG--------------W---D-- 140 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~-------~~--------------~---~-- 140 (302)
.+. .++..+++|++.|.|..|+|.++ .++++|.|.+|++||+..- +. + +
T Consensus 123 qsr---~~iavltGHnHYVMcAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 123 QSR---KCIAVLTGHNHYVMCAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred cCC---ceEEEEecCceEEEeeccCCccc--eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 776 47889999999999999999744 8999999999999998421 00 0 0
Q ss_pred eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCceeEEEeeC
Q 022111 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVRSVAWAP 219 (302)
Q Consensus 141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~~v~~~p 219 (302)
...+..+|...|+-++|.|.. -+|+||+.|+.|++|.+... .|. +.+..||-+.|.|+-|+|
T Consensus 198 VK~VLEGHDRGVNwaAfhpTl--------------pliVSG~DDRqVKlWrmnetKaWE---vDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTL--------------PLIVSGADDRQVKLWRMNETKAWE---VDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred eeeeecccccccceEEecCCc--------------ceEEecCCcceeeEEEecccccee---ehhhhcccCCcceEEecC
Confidence 011223777788888888754 58999999999999999753 343 456789999999999999
Q ss_pred CCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCce
Q 022111 220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE 291 (302)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~ 291 (302)
.. +.|+|.|+|++|||||+.+.... .......+..|.++-+|..+++|+|.+.++.+++...+++
T Consensus 261 ~q----~lIlSnsEDksirVwDm~kRt~v---~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 261 HQ----DLILSNSEDKSIRVWDMTKRTSV---QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred cc----ceeEecCCCccEEEEecccccce---eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc
Confidence 64 67999999999999999764321 2223345789999999999999999666899998764433
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.3e-33 Score=249.63 Aligned_cols=251 Identities=26% Similarity=0.380 Sum_probs=207.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
+..||++.|.++....+|.+|+|||.|.++++|.+++.. ..++.+..+|++.|.+++++.. ....++++|.|+++++
T Consensus 360 ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVSQDCTLKL 438 (775)
T ss_pred EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEecCCceEEE
Confidence 567999999999866678899999999999999884332 2345667899999999999653 4678999999999999
Q ss_pred EEcCCCCce--eEEE----EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 84 WKEGNQNDW--TQAH----TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 84 wd~~~~~~~--~~~~----~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
|++....+. .... +-..|...|+|++++|+ ..++||||.|++.+||++... .....+ .+|...+.++.|
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~SqDktaKiW~le~~--~l~~vL-sGH~RGvw~V~F 513 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGSQDKTAKIWDLEQL--RLLGVL-SGHTRGVWCVSF 513 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecccccceeeecccCc--eEEEEe-eCCccceEEEEe
Confidence 998652211 1111 23459999999999998 458999999999999999732 222344 499999999999
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i 237 (302)
+|.. +.++|||.|++|+||.+.+. .|+.+|.||+..|..+.|-.++ .+|+|++.||-|
T Consensus 514 s~~d--------------q~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~~----~qliS~~adGli 571 (775)
T KOG0319|consen 514 SKND--------------QLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRNG----KQLISAGADGLI 571 (775)
T ss_pred cccc--------------ceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeCC----cEEEeccCCCcE
Confidence 9853 78999999999999999875 7999999999999999998774 889999999999
Q ss_pred EEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
+||++++.. . ...+..|.+.||+++-+|.+.++++|+.| .|.+|+..
T Consensus 572 KlWnikt~e--C-~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 572 KLWNIKTNE--C-EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EEEeccchh--h-hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 999998642 2 23457899999999999999999999999 69999863
No 24
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=226.72 Aligned_cols=253 Identities=23% Similarity=0.360 Sum_probs=203.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
++..||-+.|.++++.|.+++|++|+.|++++|||+.+ ++...++.||...|..+++++. ..||++|+.|++|+-|
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat--g~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT--GQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc--CeEEEeecchhheeeeeeeccc--CceEEEecCCCeeEEE
Confidence 34679999999999999999999999999999999976 4556789999999999999864 5799999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|++.+. -+..+-+|...|.|++.+|.. ..|++|+.|.++++||+++.. ....+ .+|..+|.++.+.|..
T Consensus 221 DLe~nk---vIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~--~V~~l-~GH~~~V~~V~~~~~d--- 289 (460)
T KOG0285|consen 221 DLEYNK---VIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRA--SVHVL-SGHTNPVASVMCQPTD--- 289 (460)
T ss_pred echhhh---hHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccc--eEEEe-cCCCCcceeEEeecCC---
Confidence 998763 345677899999999999973 489999999999999998653 33444 3899999999988753
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccc-------------------------------------ccccccccc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-------------------------------------MDCFPALQM 207 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------------------------------------~~~~~~~~~ 207 (302)
.+++||+.|++|++||++.+... ...++.+.+
T Consensus 290 -----------pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 290 -----------PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred -----------CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence 47999999999999999765210 012234667
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-----ccCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-----KDFKTPVWSVSWSLTGNLLAVADAN-NV 281 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-----~~~~~~v~~~~~spdg~~la~~~~d-~i 281 (302)
|..-|++++-+.| ..+++|++.|.|..||.++.......... .+.+..|.+.+|...|.+|+++..| +|
T Consensus 359 h~~iintl~~nsD-----~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 359 HNAIINTLSVNSD-----GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred ccceeeeeeeccC-----ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcce
Confidence 7777888877766 57999999999999999875422111111 1234568999999999999999888 89
Q ss_pred EEeeecC
Q 022111 282 TLWKEAV 288 (302)
Q Consensus 282 ~~w~~~~ 288 (302)
++|+..+
T Consensus 434 k~~keDe 440 (460)
T KOG0285|consen 434 KMYKEDE 440 (460)
T ss_pred EEEeccc
Confidence 9999744
No 25
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-32 Score=218.23 Aligned_cols=242 Identities=19% Similarity=0.234 Sum_probs=199.6
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCC----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
...|-.++|+|.|+++|.||.|+.+.||+++.. ..+....+.+|.+.+.+++|-+ ...|+|+|.|.++.+||+
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDI 173 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEc
Confidence 446778999999999999999999999999633 1234567899999999999964 356789999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
+++. .+..|.+|.+-|.+++++|. +++.+++|+-|+.-+|||++.....+ .+. +|...|+++.|.|++
T Consensus 174 e~g~---~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~q--tF~-ghesDINsv~ffP~G----- 241 (343)
T KOG0286|consen 174 ETGQ---QTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQ--TFE-GHESDINSVRFFPSG----- 241 (343)
T ss_pred ccce---EEEEecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeE--eec-ccccccceEEEccCC-----
Confidence 8873 67789999999999999995 36799999999999999999775443 333 899999999999974
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
.-|++|+.|++.|+||++..+.. . ...-..-..+|++++||-.| +.|.+|-.|.++.+||.-...
T Consensus 242 ---------~afatGSDD~tcRlyDlRaD~~~-a-~ys~~~~~~gitSv~FS~SG----RlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 242 ---------DAFATGSDDATCRLYDLRADQEL-A-VYSHDSIICGITSVAFSKSG----RLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred ---------CeeeecCCCceeEEEeecCCcEE-e-eeccCcccCCceeEEEcccc----cEEEeeecCCceeEeeccccc
Confidence 67999999999999999975321 1 11222335679999999874 889999999999999975432
Q ss_pred cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
....+.+|+..|.++..+|||.-|++|+=| .++||.
T Consensus 307 ---~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 307 ---RVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---eEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 234567999999999999999999999989 799993
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7e-32 Score=244.96 Aligned_cols=251 Identities=31% Similarity=0.457 Sum_probs=201.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
...+|...|.+++|+|+++++++++.|++++|||+. .....+.++.+|...|++++|++. ++++++|+.|++|+|||
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWD 274 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEe
Confidence 347899999999999999999999999999999993 334678899999999999999864 69999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC--CeEEEEeCCCCCC
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV--GVTSVSWAPAMAP 163 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~ 163 (302)
++++ ++..++.+|.+.|++++|+++ +..|++++.|+.|++||...........+ ..+.. .++++.|+|+
T Consensus 275 ~~~~---~~~~~l~~hs~~is~~~f~~d--~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~--- 345 (456)
T KOG0266|consen 275 VRTG---ECVRKLKGHSDGISGLAFSPD--GNLLVSASYDGTIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPN--- 345 (456)
T ss_pred ccCC---eEEEeeeccCCceEEEEECCC--CCEEEEcCCCccEEEEECCCCceeeeecc-cCCCCCCceeEEEECCC---
Confidence 9874 578899999999999999998 66899999999999999975431101122 13333 5899999986
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
+.+|++++.|+++++||+..+ .+...+.+|...+.| -|++.....+..+.+|+.|+.|++||+.
T Consensus 346 -----------~~~ll~~~~d~~~~~w~l~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 346 -----------GKYLLSASLDRTLKLWDLRSG----KSVGTYTGHSNLVRC-IFSPTLSTGGKLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred -----------CcEEEEecCCCeEEEEEccCC----cceeeecccCCccee-EecccccCCCCeEEEEeCCceEEEEeCC
Confidence 489999999999999999876 455667778775433 2333222235889999999999999998
Q ss_pred cCCcceeeeeeccC-CCcEEEEEEccCCCEEEEec--CC-ceEEeeec
Q 022111 244 KEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVAD--AN-NVTLWKEA 287 (302)
Q Consensus 244 ~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~--~d-~i~~w~~~ 287 (302)
.... ...+.+| ...+..++|+|..+++++++ .| .+++|+..
T Consensus 410 s~~~---~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 410 SGGI---LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccch---hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 6322 1234566 77899999999999999997 45 69999853
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-31 Score=229.99 Aligned_cols=269 Identities=20% Similarity=0.325 Sum_probs=200.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec---CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK---GHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
++..|..-|+++.|+|||++++|+|.||++.|||-.. ++.+..+. +|++.|++|+|+|+ ++.++|+|.|+++|
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADKTIK 260 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCC--CceEEEecCCceEE
Confidence 3557999999999999999999999999999998543 45566665 89999999999975 79999999999999
Q ss_pred EEEcCCCCc----------------------------------------eeEEEEecCCCCCeeEEEecCCCCCcEEEEE
Q 022111 83 IWKEGNQND----------------------------------------WTQAHTFNDHKSSVNSIAWAPHELGLSLACG 122 (302)
Q Consensus 83 iwd~~~~~~----------------------------------------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg 122 (302)
|||+.+... ....+++.+|+..|+++..+|| +..|.+|
T Consensus 261 IWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d--~~~i~Sg 338 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD--GKTIYSG 338 (603)
T ss_pred EEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC--CCEEEee
Confidence 999865321 1123466789999999999998 5799999
Q ss_pred ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE-----------eC-------------------------------CC
Q 022111 123 SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS-----------WA-------------------------------PA 160 (302)
Q Consensus 123 ~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~-------------------------------~~ 160 (302)
+.||.|.-|+...+....+ ....|...|.++. |. ++
T Consensus 339 syDG~I~~W~~~~g~~~~~--~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 339 SYDGHINSWDSGSGTSDRL--AGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred ccCceEEEEecCCcccccc--ccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 9999999999865422111 0012322222222 11 11
Q ss_pred CCCCceee-------------------------cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEE
Q 022111 161 MAPGALVG-------------------------LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSV 215 (302)
Q Consensus 161 ~~~~~~~~-------------------------~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v 215 (302)
+. -.++. ....+++..++.|+.|+.|+||.+..... .....+..|.+.|++|
T Consensus 417 ~~-~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 417 GG-TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL--KEEAKLLEHRAAITDV 493 (603)
T ss_pred CC-EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc--cceeeeecccCCceEE
Confidence 00 00000 01124577899999999999999987532 1223456799999999
Q ss_pred EeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
+||||+ .+||++...+.+-+||+.+... ....-.-|...|.+++|||+..++|+|+-| .|.+|.+..+..
T Consensus 494 aySpd~----~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 494 AYSPDG----AYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred EECCCC----cEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhh
Confidence 999996 7899999999999999976432 111112367889999999999999999999 799999876544
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-31 Score=228.52 Aligned_cols=249 Identities=24% Similarity=0.416 Sum_probs=202.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++..|+++|.++.|+..|.+|++++.|+++.+||...+ .....+.-|+.+-..|.|-. ..-+++++.|+.|+++.
T Consensus 271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g--~~~q~f~~~s~~~lDVdW~~---~~~F~ts~td~~i~V~k 345 (524)
T KOG0273|consen 271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG--TVKQQFEFHSAPALDVDWQS---NDEFATSSTDGCIHVCK 345 (524)
T ss_pred hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc--eEEEeeeeccCCccceEEec---CceEeecCCCceEEEEE
Confidence 46679999999999999999999999999999998654 34456667888877889964 35789999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+... .++.++.+|.++|.++.|+|. +.+|+++|+|++++||.....+.. ..+ ++|...|.++.|+|.+.-..
T Consensus 346 v~~~---~P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~~~~--~~l-~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 346 VGED---RPVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQSNSV--HDL-QAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred ecCC---CcceeeecccCceEEEEECCC--CceEEEecCCCeeEeeecCCCcch--hhh-hhhccceeeEeecCCCCccC
Confidence 8654 478899999999999999997 789999999999999987654432 333 38888999999999753110
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
....+..|++++.|++|++||+..+ .++.+|..|..+|++|+|+|++ .++|+|+.||.|.||+++..
T Consensus 418 -----n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 418 -----NPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred -----CCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCceEEEEecCCC----cEEEecCCCCeeEeccccch
Confidence 1112567999999999999999987 5678899999999999999996 88999999999999998753
Q ss_pred Ccceeeeeec--cCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 246 GEQWEGRVLK--DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 246 ~~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
. +.+ ...+.|..+.||.+|++|.++-+| .+.+-|.
T Consensus 485 ~------l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 485 K------LVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred h------eeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2 222 223458999999999988777666 6776553
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-32 Score=225.87 Aligned_cols=253 Identities=24% Similarity=0.391 Sum_probs=198.4
Q ss_pred ccccccccceeEEEEc-cC--CCEEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 5 KIETGHEDTVHDVAMD-FY--GKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s-~~--~~~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
++..||.++|.++++- ++ ...|+++|.|.++++|.++.+.. +.+....||++.|-+|+..+ +|.+++|||.|.
T Consensus 138 ~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~--sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 138 KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS--SGTRFCSGSWDT 215 (423)
T ss_pred EEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC--CCCeEEeecccc
Confidence 4567999999987764 33 23699999999999999865432 22344569999999998764 489999999999
Q ss_pred eEEEEEcCCC----------------------CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111 80 QVIIWKEGNQ----------------------NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG 137 (302)
Q Consensus 80 ~i~iwd~~~~----------------------~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~ 137 (302)
+++||+.... ....++-++.+|.++|.++.|++ ...+.++++|.+|+.||+..++
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~ 292 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGG 292 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeeccc
Confidence 9999983210 01235567889999999999987 3479999999999999998765
Q ss_pred CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEe
Q 022111 138 GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW 217 (302)
Q Consensus 138 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 217 (302)
... .+ ..+...+++..+|. ..+|++|+.|+.+++||.+++.-.+ ..+.|.||+++|.++.|
T Consensus 293 ~~~--~~--~~~ksl~~i~~~~~--------------~~Ll~~gssdr~irl~DPR~~~gs~-v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 293 LKS--TL--TTNKSLNCISYSPL--------------SKLLASGSSDRHIRLWDPRTGDGSV-VSQSLIGHKNWVSSVKW 353 (423)
T ss_pred cee--ee--ecCcceeEeecccc--------------cceeeecCCCCceeecCCCCCCCce-eEEeeecchhhhhheec
Confidence 432 11 22345778887774 3789999999999999999875433 34678999999999999
Q ss_pred eCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 218 APNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 218 ~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
+|.. ..+|+|||.|+++++||+|+...+. ..+.+|.+.|.++.|+. +..|++|+.| +|++++..
T Consensus 354 sp~~---~~~~~S~S~D~t~klWDvRS~k~pl--ydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTN---EFQLVSGSYDNTVKLWDVRSTKAPL--YDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCC---ceEEEEEecCCeEEEEEeccCCCcc--eeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9975 5789999999999999999876442 23467889999999974 6688899888 79999853
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.4e-31 Score=242.93 Aligned_cols=251 Identities=28% Similarity=0.440 Sum_probs=201.4
Q ss_pred ccccc-ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 6 IETGH-EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 6 ~~~~h-~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
++.+| ...|.++.|+++|+.|++++.|+.+++|+...........+.+|...|..++|+++ ++++++++.|++++||
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIW 230 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCC--CcEEEEecCCceEEEe
Confidence 34444 67899999999999999999999999999854321244566899999999999875 7899999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|+.... ..++++.+|...|++++|+|+ +.++++|+.|++|++||++... ....+ .+|...|++++|++++
T Consensus 231 d~~~~~--~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvriWd~~~~~--~~~~l-~~hs~~is~~~f~~d~--- 300 (456)
T KOG0266|consen 231 DLKDDG--RNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVRIWDVRTGE--CVRKL-KGHSDGISGLAFSPDG--- 300 (456)
T ss_pred eccCCC--eEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEEEEeccCCe--EEEee-eccCCceEEEEECCCC---
Confidence 994432 477899999999999999998 5799999999999999998632 22333 4899999999999864
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
..|++++.|+.|+|||+.++... +...+.++.. +++++.|+|++ .+|++++.|+.+++||+
T Consensus 301 -----------~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~----~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 301 -----------NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG----KYLLSASLDRTLKLWDL 363 (456)
T ss_pred -----------CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC----cEEEEecCCCeEEEEEc
Confidence 78999999999999999887421 3445555554 49999999995 78999999999999999
Q ss_pred ccCCcceeeeeeccCCC---cEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 243 AKEGEQWEGRVLKDFKT---PVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 243 ~~~~~~~~~~~~~~~~~---~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+...-. .....+.. .+.+..++++|+++.+++.| .|.+|+...
T Consensus 364 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 364 RSGKSV---GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred cCCcce---eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 864321 22233333 34455668899999999999 799999865
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.6e-34 Score=233.00 Aligned_cols=233 Identities=20% Similarity=0.345 Sum_probs=195.1
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
..+.|+++.++ ...++||..|++|+|||... ..++..+.||++.|.|+.|. .+.++|||.|.+|++||.+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~--~~c~~~L~GHtGSVLCLqyd----~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNS--LECLKILTGHTGSVLCLQYD----ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEecccc--HHHHHhhhcCCCcEEeeecc----ceEEEecCCCceEEEEeccCC
Confidence 34678887654 56899999999999999754 56778899999999999994 468999999999999999886
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
.+++++-+|.+.|..+.|+. | ++++++.|.++++||+.............+|...|+.+.|+.
T Consensus 268 ---e~l~tlihHceaVLhlrf~n---g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---------- 330 (499)
T KOG0281|consen 268 ---EPLNTLIHHCEAVLHLRFSN---G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---------- 330 (499)
T ss_pred ---chhhHHhhhcceeEEEEEeC---C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc----------
Confidence 47888889999999999984 2 799999999999999976543333344458999999998753
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
++++|++.|++|++|++.++ .+++++.||+-.|.|+.+. +..++|||.|.+||+||+....
T Consensus 331 ------kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 331 ------KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGA--- 391 (499)
T ss_pred ------ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc------CeEEEecCCCceEEEEeccccH---
Confidence 79999999999999999887 6788999999999998764 5789999999999999997642
Q ss_pred eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..+++.+|++-|..+.| |.+.|++|.=| +|++|+...
T Consensus 392 cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 392 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred HHHHHhchHHhhhheee--cCceeeeccccceEEEEeccc
Confidence 23567888888999999 56788888777 799999743
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-31 Score=237.65 Aligned_cols=244 Identities=21% Similarity=0.360 Sum_probs=198.2
Q ss_pred cceeEEEEccCCCEEEEeeCC-CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 12 DTVHDVAMDFYGKRLATASSD-SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d-~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
..|..++|+..|.+||-|+.- |++-+|++..+. .+....+|...+.+++|+|+ |.++|||+.|+.|||||..++
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~~Sg- 382 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNTQSG- 382 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEeccCc-
Confidence 457788899899999988754 899999997643 45667899999999999875 899999999999999998665
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
.|..+|..|+..|+.+.|+.. +..+.+.+.||+|+.||+..-..+. .+....+.+..+++-.|.
T Consensus 383 --fC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVRAwDlkRYrNfR--Tft~P~p~QfscvavD~s---------- 446 (893)
T KOG0291|consen 383 --FCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVRAWDLKRYRNFR--TFTSPEPIQFSCVAVDPS---------- 446 (893)
T ss_pred --eEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEEeeeecccceee--eecCCCceeeeEEEEcCC----------
Confidence 589999999999999999976 6799999999999999997543333 332233455667776665
Q ss_pred cCCCceeEEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 171 LLDPVQKLASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
|..+..|+.|.. |++|++.++ ..+..+.||+++|.+++|+|++ +.|+|+|.|++||+||+-....+
T Consensus 447 ----GelV~AG~~d~F~IfvWS~qTG----qllDiLsGHEgPVs~l~f~~~~----~~LaS~SWDkTVRiW~if~s~~~- 513 (893)
T KOG0291|consen 447 ----GELVCAGAQDSFEIFVWSVQTG----QLLDILSGHEGPVSGLSFSPDG----SLLASGSWDKTVRIWDIFSSSGT- 513 (893)
T ss_pred ----CCEEEeeccceEEEEEEEeecC----eeeehhcCCCCcceeeEEcccc----CeEEeccccceEEEEEeeccCce-
Confidence 367777777774 999999998 4567889999999999999985 78999999999999998654221
Q ss_pred eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
.+. .+....+.+++|+|||+.||++.-| .|.+||..++.+
T Consensus 514 -vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 514 -VET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred -eee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 122 2445679999999999999999999 799999865443
No 33
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-32 Score=215.81 Aligned_cols=247 Identities=28% Similarity=0.456 Sum_probs=201.6
Q ss_pred cccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 10 HEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 10 h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
-++.+.+++|+++. ..+++++-||.++|||... +..++..++.|..+|.++.|+. .....++++|.|++||+|+...
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-~s~Pi~~~kEH~~EV~Svdwn~-~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-PSKPIHKFKEHKREVYSVDWNT-VRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC-CCcchhHHHhhhhheEEecccc-ccceeEEeeccCCceEeecCCC
Confidence 35678899999874 6888889999999999653 4457889999999999999975 4567788889999999999865
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
.+ .+.+|++|+.-|....|+|.. +..++++|.|+++++||++..+.... ++ .|...+.++.|+...
T Consensus 137 ~~---Sv~Tf~gh~~~Iy~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~--i~-ah~~Eil~cdw~ky~------- 202 (311)
T KOG0277|consen 137 PN---SVQTFNGHNSCIYQAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMS--IE-AHNSEILCCDWSKYN------- 202 (311)
T ss_pred Cc---ceEeecCCccEEEEEecCCCC-CCeEEEccCCceEEEEEecCCCceeE--EE-eccceeEeecccccC-------
Confidence 53 577899999999999999985 56899999999999999987654332 43 788899999998643
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
...|+||+.|+.||+||++.-. ..+..+.+|.-.|+.|.|||.. ...|||+|.|=++||||...+...
T Consensus 203 ------~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sph~---~~lLaSasYDmT~riw~~~~~ds~ 270 (311)
T KOG0277|consen 203 ------HNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSPHH---ASLLASASYDMTVRIWDPERQDSA 270 (311)
T ss_pred ------CcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCcch---hhHhhhccccceEEecccccchhh
Confidence 3689999999999999998653 3356778999999999999974 478999999999999998754321
Q ss_pred eeeeeeccCCCcEEEEEEcc-CCCEEEEecCC-ceEEeee
Q 022111 249 WEGRVLKDFKTPVWSVSWSL-TGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d-~i~~w~~ 286 (302)
.+....|.+-+..+.||+ ++.++|+.+=| .+.+|+.
T Consensus 271 --~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 271 --IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred --hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 122345666689999998 66788888888 7999973
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=234.96 Aligned_cols=244 Identities=23% Similarity=0.337 Sum_probs=200.2
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
-+.+|.++.|-.--+++++|++|..||+|+..+ .+.+.+|.+|++.|++|+..| + -.++.|+|.|-+|++||.+.
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~ekV~~FeAH~DyIR~iavHP-t-~P~vLtsSDDm~iKlW~we~- 128 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--GEKVKTFEAHSDYIRSIAVHP-T-LPYVLTSSDDMTIKLWDWEN- 128 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEeccc--ceeeEEeeccccceeeeeecC-C-CCeEEecCCccEEEEeeccC-
Confidence 345677777776678999999999999999864 567889999999999999854 4 35888999999999999865
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
.|.+.++|.+|...|.+++|+|.++ ..+|+++.|++|++|.+.... ....+. +|...|+++.+-+.+
T Consensus 129 -~wa~~qtfeGH~HyVMqv~fnPkD~-ntFaS~sLDrTVKVWslgs~~--~nfTl~-gHekGVN~Vdyy~~g-------- 195 (794)
T KOG0276|consen 129 -EWACEQTFEGHEHYVMQVAFNPKDP-NTFASASLDRTVKVWSLGSPH--PNFTLE-GHEKGVNCVDYYTGG-------- 195 (794)
T ss_pred -ceeeeeEEcCcceEEEEEEecCCCc-cceeeeeccccEEEEEcCCCC--Cceeee-ccccCcceEEeccCC--------
Confidence 4789999999999999999999864 579999999999999986542 234454 999999999997753
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
+.-+|+||+.|.+++|||..+. .|++++.||...|..+.|+|.. ..|+|||+||++|||+..+-..
T Consensus 196 ----dkpylIsgaDD~tiKvWDyQtk----~CV~TLeGHt~Nvs~v~fhp~l----piiisgsEDGTvriWhs~Ty~l-- 261 (794)
T KOG0276|consen 196 ----DKPYLISGADDLTIKVWDYQTK----SCVQTLEGHTNNVSFVFFHPEL----PIIISGSEDGTVRIWNSKTYKL-- 261 (794)
T ss_pred ----CcceEEecCCCceEEEeecchH----HHHHHhhcccccceEEEecCCC----cEEEEecCCccEEEecCcceeh--
Confidence 2358999999999999999875 7999999999999999999986 6899999999999998654211
Q ss_pred eeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 250 EGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
...+.-..+.+|+++-.+.++.+++|.+++..+-+.
T Consensus 262 -E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 262 -EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred -hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 112222236799999999888899997776555543
No 35
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-31 Score=227.07 Aligned_cols=258 Identities=21% Similarity=0.373 Sum_probs=204.9
Q ss_pred ccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceE--------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 9 GHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQH--------LATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~--------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
-|.+.|+.++.-|+. ..+|+.+..+.|.|||.......+ -..|.+|++.-++++|++.. .-.|++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~-~g~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ-EGTLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc-ceeEeeccCCC
Confidence 588999999988876 677888899999999986433222 23788999988899998754 34678999999
Q ss_pred eEEEEEcCCCCc----eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111 80 QVIIWKEGNQND----WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV 155 (302)
Q Consensus 80 ~i~iwd~~~~~~----~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~ 155 (302)
+|++||+..... ..+...+.+|...|..++|+|-. ..+++++++|+.+.|||.+.. .........+|...+.++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-EDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccc-hhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEE
Confidence 999999964332 33556788999999999999874 457999999999999999952 222333335899999999
Q ss_pred EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111 156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~ 235 (302)
+|+|.. +..|||||.|++|+|||+++-. .++.++.+|++.|.+|.|+|.. ...|||++.|+
T Consensus 279 ~fnp~~-------------~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~---etvLASSg~D~ 339 (422)
T KOG0264|consen 279 AFNPFN-------------EFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHN---ETVLASSGTDR 339 (422)
T ss_pred EeCCCC-------------CceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCC---CceeEecccCC
Confidence 999964 4689999999999999999754 3678899999999999999985 57899999999
Q ss_pred eEEEEEeccCCccee--------ee---eeccCCCcEEEEEEccCCC-EEEEecCC-ceEEeeecC
Q 022111 236 TVVIWTCAKEGEQWE--------GR---VLKDFKTPVWSVSWSLTGN-LLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 236 ~i~iwd~~~~~~~~~--------~~---~~~~~~~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~ 288 (302)
.+.+||+..-++... .+ +..+|...|..++|+|+.. .|++++.| .+.||++++
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 999999976432210 11 2367888999999999875 44666666 699999873
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.8e-30 Score=246.99 Aligned_cols=249 Identities=20% Similarity=0.283 Sum_probs=193.6
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
.+|...|.+++|++++++||+|+.|++|+||+..... ..+...+.+ ...|.+++|+++ .+.+||+++.|++|
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~-~~~~las~~~Dg~v 557 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSY-IKSQVASSNFEGVV 557 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccC-CCCEEEEEeCCCeE
Confidence 3589999999999999999999999999999974310 012233443 457899999764 46899999999999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
++||+.+. ..+..+.+|.+.|.+++|+|.. +.+|++|+.|++|++||+...... ..+. +...+.++.|.+..
T Consensus 558 ~lWd~~~~---~~~~~~~~H~~~V~~l~~~p~~-~~~L~Sgs~Dg~v~iWd~~~~~~~--~~~~--~~~~v~~v~~~~~~ 629 (793)
T PLN00181 558 QVWDVARS---QLVTEMKEHEKRVWSIDYSSAD-PTLLASGSDDGSVKLWSINQGVSI--GTIK--TKANICCVQFPSES 629 (793)
T ss_pred EEEECCCC---eEEEEecCCCCCEEEEEEcCCC-CCEEEEEcCCCEEEEEECCCCcEE--EEEe--cCCCeEEEEEeCCC
Confidence 99998765 3567788999999999999742 568999999999999998754322 2222 23568888886532
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
+..|++|+.|+.|++||+++.. ..+..+.+|...|.++.|.+ +..|++++.|++|+|||
T Consensus 630 -------------g~~latgs~dg~I~iwD~~~~~---~~~~~~~~h~~~V~~v~f~~-----~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 630 -------------GRSLAFGSADHKVYYYDLRNPK---LPLCTMIGHSKTVSYVRFVD-----SSTLVSSSTDNTLKLWD 688 (793)
T ss_pred -------------CCEEEEEeCCCeEEEEECCCCC---ccceEecCCCCCEEEEEEeC-----CCEEEEEECCCEEEEEe
Confidence 5789999999999999998652 12345678999999999973 26799999999999999
Q ss_pred eccCCc---ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 242 CAKEGE---QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 242 ~~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
++.... ......+.+|...+..++|+|++.+|++|+.| .|++|+..
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 874210 00112345677889999999999999999988 79999964
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.5e-30 Score=202.67 Aligned_cols=249 Identities=18% Similarity=0.258 Sum_probs=194.3
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+..|+++|..+.|+.||++.++||.|++||||+... +..+.+..+|...|..++.+.+ +..+++|+.|+.+.+||+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--g~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--GALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccc--cceeeeecCCCceeeecccccc--ccccccCCCCceEEEEEc
Confidence 467999999999999999999999999999999865 4578899999999999987754 678999999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
++++ ....|.+|.+.|+.+.|+.+ ...+++|+.|.++++||-+.... .+.++.......|.++..+
T Consensus 89 ~TGk---v~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~-------- 154 (307)
T KOG0316|consen 89 NTGK---VDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVA-------- 154 (307)
T ss_pred ccCe---eeeecccccceeeEEEecCc--ceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEec--------
Confidence 8874 67789999999999999866 45899999999999999875432 2222222345567776653
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
+..|++|+.||++|.||++.+.... .. ...+|+|++|+||+ +..+.++.|++||+-|-.+.+
T Consensus 155 --------~heIvaGS~DGtvRtydiR~G~l~s----Dy--~g~pit~vs~s~d~----nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 155 --------EHEIVAGSVDGTVRTYDIRKGTLSS----DY--FGHPITSVSFSKDG----NCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred --------ccEEEeeccCCcEEEEEeecceeeh----hh--cCCcceeEEecCCC----CEEEEeeccceeeecccchhH
Confidence 3579999999999999999874221 12 24569999999996 789999999999998865421
Q ss_pred cceeeeeeccCCCc--EEEEEEccCCCEEEEecCC-ceEEeeecCCceEEE
Q 022111 247 EQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQ 294 (302)
Q Consensus 247 ~~~~~~~~~~~~~~--v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~ 294 (302)
. . ...++|... -..+.++.....+++++.| .+.+||..++.+.-.
T Consensus 217 l--L-~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk 264 (307)
T KOG0316|consen 217 L--L-KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK 264 (307)
T ss_pred H--H-HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee
Confidence 1 0 111344332 3356788778899999999 699999865544433
No 38
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.4e-30 Score=218.43 Aligned_cols=264 Identities=23% Similarity=0.366 Sum_probs=195.9
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
++++..|.++|+-+.||++|++|||++.|.+..+|.+.... .+...++-+|..+|.-|.|+|+ .++|++|+.|..++
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~~ 294 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVLS 294 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCC--CCeEEecCchHhee
Confidence 46788999999999999999999999999999999985422 4456788999999999999985 68999999999999
Q ss_pred EEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC--CCeeeeeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD--GGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+||..++. ..+.+. +|...+.+++|.|| |..+++|+.|+++..||+... +.|.-.+ ...|.+++..+
T Consensus 295 lwDv~tgd---~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~ 364 (519)
T KOG0293|consen 295 LWDVDTGD---LRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITY 364 (519)
T ss_pred eccCCcch---hhhhcccCcCCCcceeEEccC--CceeEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcC
Confidence 99997753 233332 24578999999999 778999999999999987521 1232111 12244444444
Q ss_pred CCCC---------------------------CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc-
Q 022111 160 AMAP---------------------------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW- 211 (302)
Q Consensus 160 ~~~~---------------------------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~- 211 (302)
++.. ..+..+..+.+++++++--.+..+++||+... ..++.+.||+..
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGH 440 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHhhcccccc
Confidence 3310 01112223345777777888899999999865 345567777643
Q ss_pred -eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeeecC
Q 022111 212 -VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 212 -v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~~~ 288 (302)
|-.-+|. +.+..+++|||+|+.|+||+..+.+. ...+.+|...|..|+|+|. -.++|+|++| +|+||....
T Consensus 441 fiIrSCFg---g~~~~fiaSGSED~kvyIWhr~sgkl---l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 441 FIIRSCFG---GGNDKFIASGSEDSKVYIWHRISGKL---LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEEeccC---CCCcceEEecCCCceEEEEEccCCce---eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3333453 23358999999999999999876532 3456899999999999995 4889999999 799998754
Q ss_pred C
Q 022111 289 D 289 (302)
Q Consensus 289 ~ 289 (302)
+
T Consensus 515 ~ 515 (519)
T KOG0293|consen 515 N 515 (519)
T ss_pred c
Confidence 3
No 39
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=8.1e-32 Score=222.55 Aligned_cols=248 Identities=21% Similarity=0.295 Sum_probs=193.5
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
+.||.+.|.+++-+|.. ..+|||+.||.|+|||++. ..++.++.+|.+.|..|++.. .-+++++.|++|+.|.
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46999999999999876 7899999999999999965 456788999999999999853 4678999999999997
Q ss_pred cCCCC-----------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111 86 EGNQN-----------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130 (302)
Q Consensus 86 ~~~~~-----------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~ 130 (302)
+.... ...++..+.-..+.|.++.|+|-+ ..+|++|+.|+.|.|
T Consensus 136 ~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvE-TsILas~~sDrsIvL 214 (433)
T KOG0268|consen 136 IDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVE-TSILASCASDRSIVL 214 (433)
T ss_pred ccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCc-chheeeeccCCceEE
Confidence 42110 011333444455778888899875 357999999999999
Q ss_pred EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111 131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
||++...+.....+ ....+.++|+|.. -.|+++.+|..++.||++.-. ..+..+.+|.+
T Consensus 215 yD~R~~~Pl~KVi~----~mRTN~IswnPea--------------fnF~~a~ED~nlY~~DmR~l~---~p~~v~~dhvs 273 (433)
T KOG0268|consen 215 YDLRQASPLKKVIL----TMRTNTICWNPEA--------------FNFVAANEDHNLYTYDMRNLS---RPLNVHKDHVS 273 (433)
T ss_pred EecccCCccceeee----eccccceecCccc--------------cceeeccccccceehhhhhhc---ccchhhcccce
Confidence 99997654432222 3446789999943 578999999999999998643 34556788999
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.|.+|+|||.| +-|+|||.|++||||..+..... ......-...|.++.||.|.+++.+|++| +|++|+...
T Consensus 274 AV~dVdfsptG----~EfvsgsyDksIRIf~~~~~~SR--diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 274 AVMDVDFSPTG----QEFVSGSYDKSIRIFPVNHGHSR--DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eEEEeccCCCc----chhccccccceEEEeecCCCcch--hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999996 77999999999999998753210 01112223569999999999999999999 899999764
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=4.4e-29 Score=211.30 Aligned_cols=249 Identities=33% Similarity=0.488 Sum_probs=199.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+++.+|+++|++++|++++++|++++.|+.+++|++.... ....+.+|...+..+.|.++ +++|++++.|+.+++|
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTLKGHTGPVRDVAASAD--GTYLASGSSDKTIRLW 78 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEEecCCcceeEEEECCC--CCEEEEEcCCCeEEEE
Confidence 3466999999999999999999999999999999987533 45567789999999999764 6799999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
++.... ....+..|...|.++.|+|+ +.++++++.++.+.+|++.... ....+. .|...+.++.|+|+.
T Consensus 79 ~~~~~~---~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~-~~~~~i~~~~~~~~~--- 147 (289)
T cd00200 79 DLETGE---CVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGK--CLTTLR-GHTDWVNSVAFSPDG--- 147 (289)
T ss_pred EcCccc---ceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcE--EEEEec-cCCCcEEEEEEcCcC---
Confidence 997642 45566788889999999997 5678888889999999987432 222332 677889999998852
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.++++++.|+.|++||++++ .....+..|...|.+++|+|++ +.+++++.|+.|++||++.
T Consensus 148 -----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 148 -----------TFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDG----EKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred -----------CEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCc----CEEEEecCCCcEEEEECCC
Confidence 57777777999999999765 3345566888899999999985 6788888899999999975
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG 290 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~ 290 (302)
... ......+..++.+++|+|++.++++++.+ .+++|+.....
T Consensus 209 ~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 209 GKC---LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred Cce---ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 321 12223566789999999999999888855 79999986433
No 41
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=236.19 Aligned_cols=245 Identities=19% Similarity=0.348 Sum_probs=189.3
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecC--------------------------------CC------------
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN--------------------------------SA------------ 44 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~--------------------------------~~------------ 44 (302)
+|+++|.++.||+||+|||+||.|+.||||.+.+ ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999998754 00
Q ss_pred --------------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111 45 --------------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110 (302)
Q Consensus 45 --------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~ 110 (302)
.+++..+.||.+.|..|.|+. ..+|.|+|+|+|+|||.+... .++..|. |++.|+|++|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK---n~fLLSSSMDKTVRLWh~~~~---~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK---NNFLLSSSMDKTVRLWHPGRK---ECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheeccccc---CCeeEeccccccEEeecCCCc---ceeeEEe-cCCeeEEEEe
Confidence 023456789999999999984 578999999999999998654 4777886 9999999999
Q ss_pred cCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEE
Q 022111 111 APHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVW 190 (302)
Q Consensus 111 ~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iw 190 (302)
+|-+ ..++++|+.|+.|+||.+.... ..... .-..-|++++|.|+ |+..+.|+.+|..++|
T Consensus 418 nPvD-DryFiSGSLD~KvRiWsI~d~~---Vv~W~-Dl~~lITAvcy~Pd--------------Gk~avIGt~~G~C~fY 478 (712)
T KOG0283|consen 418 NPVD-DRYFISGSLDGKVRLWSISDKK---VVDWN-DLRDLITAVCYSPD--------------GKGAVIGTFNGYCRFY 478 (712)
T ss_pred cccC-CCcEeecccccceEEeecCcCe---eEeeh-hhhhhheeEEeccC--------------CceEEEEEeccEEEEE
Confidence 9975 4689999999999999986432 12221 12356899999997 4788999999999999
Q ss_pred EEecCcccccccccc-----ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC--CcEEE
Q 022111 191 KMYNGIWKMDCFPAL-----QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK--TPVWS 263 (302)
Q Consensus 191 d~~~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~ 263 (302)
+....+........+ ..|. .|+.+.|.|.. ...|+..+.|..|||+|.++.... ..++++. ..-..
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~---~~~vLVTSnDSrIRI~d~~~~~lv---~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGD---PDEVLVTSNDSRIRIYDGRDKDLV---HKFKGFRNTSSQIS 551 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCc-eeeeeEecCCC---CCeEEEecCCCceEEEeccchhhh---hhhcccccCCccee
Confidence 987654322211111 1234 79999999863 456888899999999999653211 1123332 22446
Q ss_pred EEEccCCCEEEEecCC-ceEEeee
Q 022111 264 VSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 264 ~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
.+|+.||++|++|+.| .|++|+.
T Consensus 552 Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eeEccCCCEEEEeecCceEEEEeC
Confidence 7899999999999998 7999996
No 42
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=236.42 Aligned_cols=249 Identities=18% Similarity=0.280 Sum_probs=209.6
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
.-+..|.+++|+|..-+++++=..|.|++||..- +..+..|.+|.++|+.|.|.|. ..+++||+.|.+|++|+...
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhhhccCCccceeeecCC--CCeEEecCCccEEEEEeccc
Confidence 3456788999999999999999999999999865 3457788999999999999654 67999999999999999876
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
. .++.++.+|.+.|+.+.|++.- -+++++|+|.+|+||...+..... .+. +|..-|-|..|.|..
T Consensus 83 r---rclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~ia--vlt-GHnHYVMcAqFhptE------- 147 (1202)
T KOG0292|consen 83 R---RCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIA--VLT-GHNHYVMCAQFHPTE------- 147 (1202)
T ss_pred c---eehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEE--EEe-cCceEEEeeccCCcc-------
Confidence 5 5888999999999999999874 489999999999999987654433 333 888889999999864
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccc--------------------c---c--cccccccCCCceeEEEeeCCCCC
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWK--------------------M---D--CFPALQMHSDWVRSVAWAPNLGL 223 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------------------~---~--~~~~~~~h~~~v~~v~~~p~~~~ 223 (302)
.+++|+|-|.+|||||+..-..+ + + ..+.+.||.-.|+-++|+|..
T Consensus 148 -------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-- 218 (1202)
T KOG0292|consen 148 -------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-- 218 (1202)
T ss_pred -------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc--
Confidence 78999999999999998431100 0 1 123568999999999999986
Q ss_pred CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..|+||++|+-|++|.+...+ .|......+|...|.++-|+|..++|++.+.| +|++||+..
T Consensus 219 --pliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 219 --PLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred --ceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 679999999999999987654 48777788999999999999999999999999 799999854
No 43
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.4e-30 Score=220.09 Aligned_cols=245 Identities=21% Similarity=0.286 Sum_probs=198.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+++...++.|++++|..||+.||+|...|.|+|+|..+ ...+..+.+|+.+|..+.|++ .+++.+++|+.|+.+++|
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah~apv~~~~f~~-~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQLYAHQAPVHVTKFSP-QDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHHHhhccCceeEEEecc-cCCeEEEecCCCceEEEE
Confidence 44566788999999999999999999999999999533 335677899999999999976 468899999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|+.+.. ....+.+|++.|+|.+|+|-. ..+++||+.|+.|++||.+....+ ...+ .|..+|.++.+-|.
T Consensus 139 d~s~a~---v~~~l~~htDYVR~g~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~-v~el--nhg~pVe~vl~lps---- 207 (487)
T KOG0310|consen 139 DLSTAY---VQAELSGHTDYVRCGDISPAN-DHIVVTGSYDGKVRLWDTRSLTSR-VVEL--NHGCPVESVLALPS---- 207 (487)
T ss_pred EcCCcE---EEEEecCCcceeEeeccccCC-CeEEEecCCCceEEEEEeccCCce-eEEe--cCCCceeeEEEcCC----
Confidence 997753 244788999999999999863 458999999999999999865432 2333 57788999888775
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
|.++||+|. +.|+|||+.++... +.....|...|+|+++..++ ..|+|||-|+.+++||...
T Consensus 208 ----------gs~iasAgG-n~vkVWDl~~G~ql---l~~~~~H~KtVTcL~l~s~~----~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 208 ----------GSLIASAGG-NSVKVWDLTTGGQL---LTSMFNHNKTVTCLRLASDS----TRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ----------CCEEEEcCC-CeEEEEEecCCcee---hhhhhcccceEEEEEeecCC----ceEeecccccceEEEEccc
Confidence 367888874 67999999866422 23344599999999998774 7899999999999999643
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEee
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK 285 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~ 285 (302)
+.......+.++|.+++.+||++-+++|-+|++....
T Consensus 270 ----~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 270 ----YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ----eEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 3334446788999999999999999999888655544
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.2e-29 Score=243.91 Aligned_cols=248 Identities=21% Similarity=0.314 Sum_probs=193.5
Q ss_pred cccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 10 HEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 10 h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
+...|.+++|++. +.+||+++.|++|+|||+.+ .+.+..+.+|.+.|++++|++. ++.+|+||+.|++|++||++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCC
Confidence 3457889999864 78999999999999999865 3566788899999999999753 478999999999999999976
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
.. ....+.. ...|.++.|+++ .+..+++|+.|+.|++||++.... ....+ .+|...|.++.|.+
T Consensus 608 ~~---~~~~~~~-~~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~~~-~~~~~-~~h~~~V~~v~f~~--------- 671 (793)
T PLN00181 608 GV---SIGTIKT-KANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNPKL-PLCTM-IGHSKTVSYVRFVD--------- 671 (793)
T ss_pred Cc---EEEEEec-CCCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCCCc-cceEe-cCCCCCEEEEEEeC---------
Confidence 53 4455553 467999999654 267999999999999999875421 12223 37888999999963
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCcc--ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
+..|++++.|++|+|||++.+.. ....+..+.+|...+++++|+|++ .+|++|+.|+.|++|+.....
T Consensus 672 ------~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~----~~lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 672 ------SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD----GYIATGSETNEVFVYHKAFPM 741 (793)
T ss_pred ------CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC----CEEEEEeCCCEEEEEECCCCC
Confidence 36799999999999999975321 113456788999999999999985 789999999999999975432
Q ss_pred ccee----------eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 247 EQWE----------GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 247 ~~~~----------~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
..+. ......+...|.+++|+|++.+|++|+.+ .|++|++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 1110 00112344569999999999999999988 7999985
No 45
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.1e-30 Score=225.37 Aligned_cols=252 Identities=19% Similarity=0.240 Sum_probs=213.9
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
++.+..|++.|.++.|+|...+++++=..|.|.||+.++. ..+.++.--.-+|++..|.+. -+.+++|+.|..||+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaR--knWiv~GsDD~~IrV 81 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIAR--KNWIVTGSDDMQIRV 81 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeec--cceEEEecCCceEEE
Confidence 4456679999999999999999999999999999998753 345666556678998888764 379999999999999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
|+.++. ..+++|..|.+.|++++.+|..+ +++++|+|-+|++|+... .|...+.-.+|+.-|-+++|+|..
T Consensus 82 fnynt~---ekV~~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~--~wa~~qtfeGH~HyVMqv~fnPkD-- 152 (794)
T KOG0276|consen 82 FNYNTG---EKVKTFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWEN--EWACEQTFEGHEHYVMQVAFNPKD-- 152 (794)
T ss_pred Eecccc---eeeEEeeccccceeeeeecCCCC--eEEecCCccEEEEeeccC--ceeeeeEEcCcceEEEEEEecCCC--
Confidence 998775 57889999999999999999865 899999999999999864 466655445899999999999963
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
...+|||+-|++|+||.+-+. .+..++.||...|+||+|-|-+ +.-+|+||++|.+++|||.+
T Consensus 153 -----------~ntFaS~sLDrTVKVWslgs~----~~nfTl~gHekGVN~Vdyy~~g--dkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 153 -----------PNTFASASLDRTVKVWSLGSP----HPNFTLEGHEKGVNCVDYYTGG--DKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred -----------ccceeeeeccccEEEEEcCCC----CCceeeeccccCcceEEeccCC--CcceEEecCCCceEEEeecc
Confidence 367999999999999999776 4566889999999999998754 34689999999999999987
Q ss_pred cCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+. .....+.+|...|..+.|+|.=.++++|+.| +++||....
T Consensus 216 tk---~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 216 TK---SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred hH---HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 53 2235668899999999999999999999999 799998654
No 46
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=4.2e-29 Score=199.08 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=194.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
..++||+.+++.+.++.+|.+|.||+.|.++.+|--.+ ++.+.+..||.+.|+++.... +.++|+||++|.+++||
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n--GerlGty~GHtGavW~~Did~--~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN--GERLGTYDGHTGAVWCCDIDW--DSKHLITGSADQTAKLW 79 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecC--CceeeeecCCCceEEEEEecC--CcceeeeccccceeEEE
Confidence 45779999999999999999999999999999996533 568899999999999998754 47899999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-----CCcEEEEEecCCC-----CeeeeeecccCCCCeEE
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-----DGNISVFTATADG-----GWDTTRIDQAHPVGVTS 154 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-----d~~v~~~~~~~~~-----~~~~~~~~~~h~~~v~~ 154 (302)
|+++++ ++.+++ -..+|+.+.|+++ |.+++...+ .+.|.++|++... .-....+. .+...+++
T Consensus 80 Dv~tGk---~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~ 152 (327)
T KOG0643|consen 80 DVETGK---QLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITS 152 (327)
T ss_pred EcCCCc---EEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceee
Confidence 998874 555555 5678999999997 445554433 3578889887432 11122332 45678899
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
..|+|- ++.|++|..||.|.+||++++.. .+..-..|...|+++.++||. .+++++|.|
T Consensus 153 a~Wg~l--------------~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~----T~FiT~s~D 211 (327)
T KOG0643|consen 153 ALWGPL--------------GETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDR----TYFITGSKD 211 (327)
T ss_pred eeeccc--------------CCEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCc----ceEEecccC
Confidence 999886 48999999999999999998752 334446688999999999995 889999999
Q ss_pred CeEEEEEeccCCc---------------------------cee----------e----e-----------eeccCCCcEE
Q 022111 235 GTVVIWTCAKEGE---------------------------QWE----------G----R-----------VLKDFKTPVW 262 (302)
Q Consensus 235 ~~i~iwd~~~~~~---------------------------~~~----------~----~-----------~~~~~~~~v~ 262 (302)
.+-++||+++..- +-. + + .+++|-+||.
T Consensus 212 ttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN 291 (327)
T ss_pred ccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence 9999999865210 000 0 0 0124557999
Q ss_pred EEEEccCCCEEEEecCC-ceEEee
Q 022111 263 SVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 263 ~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
+++|+|+|+-.++|+.| -|++.-
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred eeEECCCCcccccCCCCceEEEEE
Confidence 99999999999999999 477754
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.5e-29 Score=221.93 Aligned_cols=248 Identities=21% Similarity=0.347 Sum_probs=192.4
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
.+||...+++++++|||+++|+|+.||+|+|||..+ +-++.+|..|+..|+.++|.. .++.|++.|-||+|+.||+
T Consensus 346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~--~g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTA--RGNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ccccccceeeEEECCCCcEEEeccCCCcEEEEeccC--ceEEEEeccCCCceEEEEEEe--cCCEEEEeecCCeEEeeee
Confidence 468999999999999999999999999999999865 458889999999999999975 4889999999999999998
Q ss_pred CCCCceeEEEEecCCC-CCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 87 GNQNDWTQAHTFNDHK-SSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
... ....+|+... -...|++.-|. |.++.+|+.|. .|.+|++.++.. ..+..+|+.+|.+++|+|.+
T Consensus 422 kRY---rNfRTft~P~p~QfscvavD~s--GelV~AG~~d~F~IfvWS~qTGql---lDiLsGHEgPVs~l~f~~~~--- 490 (893)
T KOG0291|consen 422 KRY---RNFRTFTSPEPIQFSCVAVDPS--GELVCAGAQDSFEIFVWSVQTGQL---LDILSGHEGPVSGLSFSPDG--- 490 (893)
T ss_pred ccc---ceeeeecCCCceeeeEEEEcCC--CCEEEeeccceEEEEEEEeecCee---eehhcCCCCcceeeEEcccc---
Confidence 654 3445555332 23356776554 77888888886 788999876533 23335999999999999974
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..|+|+|.|++||+||+-......+ + -.+...+..++|.|+| ..||+++.||.|.+||...
T Consensus 491 -----------~~LaS~SWDkTVRiW~if~s~~~vE---t-l~i~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 491 -----------SLLASGSWDKTVRIWDIFSSSGTVE---T-LEIRSDVLAVSFRPDG----KELAVATLDGQITFFDIKE 551 (893)
T ss_pred -----------CeEEeccccceEEEEEeeccCceee---e-EeeccceeEEEEcCCC----CeEEEEEecceEEEEEhhh
Confidence 6899999999999999975421111 2 2356669999999996 7899999999999999865
Q ss_pred CCcce---------ee-----eeecc---CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 245 EGEQW---------EG-----RVLKD---FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 245 ~~~~~---------~~-----~~~~~---~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..... .+ ....+ -...+.++.||+||..|++|+.. .|.||++.+
T Consensus 552 ~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 552 AVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred ceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 32110 00 01111 12468899999999999888766 799999764
No 48
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=221.89 Aligned_cols=248 Identities=20% Similarity=0.374 Sum_probs=196.9
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 6 IETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
++.||+..|+++.|.| .+.+|+|+|.|+.|+||++.. ...++.++.+|..+|..++|+. .|..+.|+|.|+.+++|
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRFLKLW 285 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhccc--cCCeeeeeecceeeeee
Confidence 3679999999999999 889999999999999999965 3568899999999999999985 48999999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|.+++. +...+. -...++|+.|+||. ...+++|+.|+.|+.||++...- .... ..|...|..+.|-+.
T Consensus 286 DtETG~---~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kv--vqeY-d~hLg~i~~i~F~~~---- 353 (503)
T KOG0282|consen 286 DTETGQ---VLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKV--VQEY-DRHLGAILDITFVDE---- 353 (503)
T ss_pred ccccce---EEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHH--HHHH-HhhhhheeeeEEccC----
Confidence 998874 444543 34678899999996 46899999999999999985421 1122 257778888888775
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------------c-------------------ccccc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------------W-------------------KMDCF 202 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------------~-------------------~~~~~ 202 (302)
+.+++|.+.|++++||+.+.+. | .+...
T Consensus 354 ----------g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 354 ----------GRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred ----------CceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 5889999999999999964421 0 01112
Q ss_pred cccccCC--CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC
Q 022111 203 PALQMHS--DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN 279 (302)
Q Consensus 203 ~~~~~h~--~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d 279 (302)
..|.||. +.-..|.||||+ .+|++|+.||.+.+||.++... ...+..|..++.++.|+|.- ..+|+++=+
T Consensus 424 K~feGh~vaGys~~v~fSpDG----~~l~SGdsdG~v~~wdwkt~kl---~~~lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 424 KRFEGHSVAGYSCQVDFSPDG----RTLCSGDSDGKVNFWDWKTTKL---VSKLKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred hhhcceeccCceeeEEEcCCC----CeEEeecCCccEEEeechhhhh---hhccccCCcceEEEEecCCCcceeEecccC
Confidence 3466775 445568999996 8899999999999999987532 23346778899999999954 677888777
Q ss_pred -ceEEee
Q 022111 280 -NVTLWK 285 (302)
Q Consensus 280 -~i~~w~ 285 (302)
.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 599995
No 49
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=9.6e-30 Score=211.38 Aligned_cols=247 Identities=26% Similarity=0.399 Sum_probs=191.4
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCeEEEEEc
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~ 86 (302)
.-|.+-|.++... ++++++|++||.+|+|+..+ +.+.++.||.++|.++.|...+ ....++++|.|.++++|.+
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G---k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~ 176 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG---KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW 176 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEecCC---ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence 3688888887766 78999999999999999864 5677889999999988875432 2346999999999999988
Q ss_pred CCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-----------------------Ceeee
Q 022111 87 GNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-----------------------GWDTT 142 (302)
Q Consensus 87 ~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-----------------------~~~~~ 142 (302)
+.+.. ....+.-.+|+..|.+++..++ +.++++|++|.++.+|+...+. ...+.
T Consensus 177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~s--gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 177 NVGENKVKALKVCRGHKRSVDSVSVDSS--GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred cCchhhhhHHhHhcccccceeEEEecCC--CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 64421 1233344589999999999887 7799999999999999832110 01112
Q ss_pred eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111 143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG 222 (302)
Q Consensus 143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 222 (302)
.+ .+|..+|.++.|++. ..+.|++.|-+|+.||+.++.. ..++. -....+|++++|..
T Consensus 255 tl-~GHt~~Vs~V~w~d~---------------~v~yS~SwDHTIk~WDletg~~----~~~~~-~~ksl~~i~~~~~~- 312 (423)
T KOG0313|consen 255 TL-EGHTEPVSSVVWSDA---------------TVIYSVSWDHTIKVWDLETGGL----KSTLT-TNKSLNCISYSPLS- 312 (423)
T ss_pred Ee-cccccceeeEEEcCC---------------CceEeecccceEEEEEeecccc----eeeee-cCcceeEeeccccc-
Confidence 23 489999999999874 5789999999999999988742 22222 23457999999974
Q ss_pred CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeee
Q 022111 223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKE 286 (302)
Q Consensus 223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~ 286 (302)
..|++|+.|+.||+||.+.....-....+.+|...|.++.|+|.. .+|++++.| .+++||.
T Consensus 313 ---~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 313 ---KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ---ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 789999999999999998764433333457888999999999966 566888888 7999997
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=4e-28 Score=205.45 Aligned_cols=243 Identities=33% Similarity=0.529 Sum_probs=196.1
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
...+|...+..+.|++++++|++++.|+.|++|++... +.+..+..|...|.++.|.++ ++++++++.|+.+++||
T Consensus 46 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 46 TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWD 121 (289)
T ss_pred EEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEE
Confidence 35578889999999999999999999999999998753 345667789989999999764 67888888899999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+++. .....+..|...|.+++|+|+ +.++++++.|+.+++||+...... ..+. .|...+.++.|+|++
T Consensus 122 ~~~~---~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~---- 189 (289)
T cd00200 122 VETG---KCLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCV--ATLT-GHTGEVNSVAFSPDG---- 189 (289)
T ss_pred CCCc---EEEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEEEEEccccccc--eeEe-cCccccceEEECCCc----
Confidence 9754 355667789999999999997 567888888999999998743322 2222 567789999998863
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
..+++++.|+.|++||++.+ .....+..|...|.+++|+|++ ..+++++.|+.|++||+...
T Consensus 190 ----------~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 190 ----------EKLLSSSSDGTIKLWDLSTG----KCLGTLRGHENGVNSVAFSPDG----YLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ----------CEEEEecCCCcEEEEECCCC----ceecchhhcCCceEEEEEcCCC----cEEEEEcCCCcEEEEEcCCc
Confidence 57888888999999999865 2344566788899999999984 67888888999999998753
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
.. ...+..+...+.+++|+|++++|++++.| .+++|+
T Consensus 252 ~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 EC---VQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ee---EEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 21 12234667789999999999999999888 799996
No 51
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=191.89 Aligned_cols=233 Identities=18% Similarity=0.262 Sum_probs=183.6
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK 102 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 102 (302)
.-+|+|+|+|.+||+|...+ +.+..++.-.+.-|..++..|+ .+.||+++. ..||+||+++.++ .++.+|.+|+
T Consensus 10 ~viLvsA~YDhTIRfWqa~t--G~C~rTiqh~dsqVNrLeiTpd--k~~LAaa~~-qhvRlyD~~S~np-~Pv~t~e~h~ 83 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALT--GICSRTIQHPDSQVNRLEITPD--KKDLAAAGN-QHVRLYDLNSNNP-NPVATFEGHT 83 (311)
T ss_pred ceEEEeccCcceeeeeehhc--CeEEEEEecCccceeeEEEcCC--cchhhhccC-CeeEEEEccCCCC-CceeEEeccC
Confidence 35899999999999999765 5678888766677999998764 567777665 6799999988765 3788999999
Q ss_pred CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111 103 SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 182 (302)
..|+++.|.-+ |...++|+.||+++|||++..... .. ..|..+|+++...|. ...|++|.
T Consensus 84 kNVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~q--R~--~~~~spVn~vvlhpn--------------QteLis~d 143 (311)
T KOG0315|consen 84 KNVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSCQ--RN--YQHNSPVNTVVLHPN--------------QTELISGD 143 (311)
T ss_pred CceEEEEEeec--CeEEEecCCCceEEEEeccCcccc--hh--ccCCCCcceEEecCC--------------cceEEeec
Confidence 99999999877 889999999999999999863221 11 257789999998885 36799999
Q ss_pred CCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc--eee-eeeccCC
Q 022111 183 CDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ--WEG-RVLKDFK 258 (302)
Q Consensus 183 ~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~-~~~~~~~ 258 (302)
.+|.|++||+.+.. |...+.. -...|.++...||+ .+++.+..-|++.+|++-..... ... .-...|.
T Consensus 144 qsg~irvWDl~~~~----c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 144 QSGNIRVWDLGENS----CTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred CCCcEEEEEccCCc----cccccCCCCCcceeeEEEcCCC----cEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 99999999998752 2222221 23579999999996 78999999999999998542111 000 1124566
Q ss_pred CcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111 259 TPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD 289 (302)
Q Consensus 259 ~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~ 289 (302)
..+..+.||||+++||++++| .++||....+
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 779999999999999999999 7999997654
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=192.32 Aligned_cols=246 Identities=21% Similarity=0.297 Sum_probs=197.3
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
.+++.||..+|.+++.+.|+..|++||.|+.|.+||+.+ ++.+..+.+|.+.|+.++|+. ++..++|||.|.++++
T Consensus 52 iktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~ 127 (307)
T KOG0316|consen 52 IKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT--GKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRL 127 (307)
T ss_pred eeeecCCCceeeeccccccccccccCCCCceEEEEEccc--CeeeeecccccceeeEEEecC--cceEEEeccccceeEE
Confidence 356789999999999999999999999999999999976 567889999999999999974 3789999999999999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
||-++.. .++++.+....+.|.++..+. ..+++|+.||+++.||++.+... .. -...+|+++++++++
T Consensus 128 wDCRS~s-~ePiQildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~--sD---y~g~pit~vs~s~d~-- 195 (307)
T KOG0316|consen 128 WDCRSRS-FEPIQILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLS--SD---YFGHPITSVSFSKDG-- 195 (307)
T ss_pred EEcccCC-CCccchhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceee--hh---hcCCcceeEEecCCC--
Confidence 9998754 468888988899999999874 37999999999999999865321 11 123468999999864
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
.+.+.++.|+++++.|-.++ +.+..++||.+.-..+..+-.. +..++++||+||.+.+||+.
T Consensus 196 ------------nc~La~~l~stlrLlDk~tG----klL~sYkGhkn~eykldc~l~q--sdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 196 ------------NCSLASSLDSTLRLLDKETG----KLLKSYKGHKNMEYKLDCCLNQ--SDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ------------CEEEEeeccceeeecccchh----HHHHHhcccccceeeeeeeecc--cceeEEeccCCceEEEEEec
Confidence 68888899999999998887 5677889998766555443321 24789999999999999997
Q ss_pred cCCcceeeeeeccCCCc-EEEEEEccCCCEEEEecCCceEEeee
Q 022111 244 KEGEQWEGRVLKDFKTP-VWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~~~-v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
..... ..+.-+..+ +.++++.|....+.+|....+.+|..
T Consensus 258 d~~~~---sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~ 298 (307)
T KOG0316|consen 258 DETQI---SKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWYQ 298 (307)
T ss_pred cceee---eeeccCCceeEEeeecccCccceeEecCCceeceee
Confidence 64311 112233344 78999999888888887777888864
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=9.7e-29 Score=220.34 Aligned_cols=251 Identities=23% Similarity=0.311 Sum_probs=201.8
Q ss_pred ccccccceeEEEE-ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAM-DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~-s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..|-.+.|.+++| -|..++||.++..+.+|+|+...... ..+.||+..|.++.... .|.+|+|||.|.++++|.
T Consensus 319 ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c---~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 319 IVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYC---QIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWR 393 (775)
T ss_pred hcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCce---EEEeCchhheeeeeecc--cCcEEEEecCCceEEEEE
Confidence 3467789999997 46678999999999999998765333 36789999999998322 378999999999999998
Q ss_pred cCCCC-ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC--eee----eeecccCCCCeEEEEeC
Q 022111 86 EGNQN-DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG--WDT----TRIDQAHPVGVTSVSWA 158 (302)
Q Consensus 86 ~~~~~-~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~--~~~----~~~~~~h~~~v~~~~~~ 158 (302)
++++. ...++.+..+|+..|.+++++... ...++++|.|.++++|++..... ..+ ......|.-.|++++.+
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~-asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLG-ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccC-ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 84432 123556788999999999997653 45899999999999999875221 111 11223688889999999
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
|+. +++||||.|++.+||++... ....++.||+-.|.||.|+|.. ..+||+|.|++||
T Consensus 473 ~nd--------------kLiAT~SqDktaKiW~le~~----~l~~vLsGH~RGvw~V~Fs~~d----q~laT~SgD~TvK 530 (775)
T KOG0319|consen 473 PND--------------KLIATGSQDKTAKIWDLEQL----RLLGVLSGHTRGVWCVSFSKND----QLLATCSGDKTVK 530 (775)
T ss_pred CCC--------------ceEEecccccceeeecccCc----eEEEEeeCCccceEEEEecccc----ceeEeccCCceEE
Confidence 864 79999999999999999854 4567899999999999999974 7899999999999
Q ss_pred EEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCc-eEEeeecC
Q 022111 239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAV 288 (302)
Q Consensus 239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~~~ 288 (302)
||.+..- .......+|...|..++|-.+|++|++++.|+ ++||+...
T Consensus 531 IW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 531 IWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999752 22344578888999999999999999999995 99999754
No 54
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.2e-27 Score=217.24 Aligned_cols=253 Identities=17% Similarity=0.226 Sum_probs=184.7
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--------e---EEEEecCcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--------Q---HLATLKGHRGPVWQVAWAHPKFGSILASCSYD 78 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--------~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D 78 (302)
|-..|.....++++..+++++.+.....|+...+.. + ....+.+|.+.|++++|+|. ++++|++|+.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCC-CCCEEEEEeCC
Confidence 444555566677877778888888888887533210 0 01246789999999999863 47899999999
Q ss_pred CeEEEEEcCCCCc----eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111 79 GQVIIWKEGNQND----WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS 154 (302)
Q Consensus 79 ~~i~iwd~~~~~~----~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~ 154 (302)
++|++||+.+... ..++..+.+|...|.+++|+|+. ..+|++|+.|++|++||+.... ....+ ..|...|.+
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~--~~~~l-~~h~~~V~s 173 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGK--AVEVI-KCHSDQITS 173 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCe--EEEEE-cCCCCceEE
Confidence 9999999865321 13466788999999999999974 3589999999999999997542 22333 378889999
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc-eeEEEeeCCCCCCccEEEEEe-
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW-VRSVAWAPNLGLPKSTIASAS- 232 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~-v~~v~~~p~~~~~~~~l~s~s- 232 (302)
++|+|++ .+|++++.|++|+|||++++. .+..+.+|.+. +..+.|.|+. ..|++++
T Consensus 174 la~spdG--------------~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~----~~ivt~G~ 231 (493)
T PTZ00421 174 LEWNLDG--------------SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRK----DLIITLGC 231 (493)
T ss_pred EEEECCC--------------CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCC----CeEEEEec
Confidence 9999864 789999999999999998763 34566778765 3467888874 4555543
Q ss_pred ---cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCc
Q 022111 233 ---QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDG 290 (302)
Q Consensus 233 ---~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~ 290 (302)
.|+.|++||++....... ....+....+....|+|++++|++++. | .|++|+.....
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~-~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYS-TVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCCCCeEEEEeCCCCCCcee-EeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 589999999986432211 111123345667789999999988763 6 79999986443
No 55
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.8e-29 Score=212.89 Aligned_cols=221 Identities=24% Similarity=0.394 Sum_probs=180.2
Q ss_pred CcccccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCc-----eEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111 3 AQKIETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSAS-----QHLATLKGHRGPVWQVAWAHPKFGSILASCS 76 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s 76 (302)
+...+.||++.=++++|++.. -.|++++.|++|.+||+..... .+...+.+|+..|..++|.+ ....++++++
T Consensus 169 Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~-~h~~lF~sv~ 247 (422)
T KOG0264|consen 169 PDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHP-LHEDLFGSVG 247 (422)
T ss_pred CceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccc-cchhhheeec
Confidence 334677999988889999865 4889999999999999964332 23456789999999999965 4467899999
Q ss_pred CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111 77 YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS 156 (302)
Q Consensus 77 ~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 156 (302)
.|+.+.|||.+.. ..++.+....|.++|.|++|+|-. +.+||+||.|++|+|||++.... .+..+. +|...|..+.
T Consensus 248 dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e-~H~dev~~V~ 323 (422)
T KOG0264|consen 248 DDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNK-PLHTFE-GHEDEVFQVE 323 (422)
T ss_pred CCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhccc-Cceecc-CCCcceEEEE
Confidence 9999999999863 334566677899999999999985 67899999999999999986543 344554 8999999999
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc----------ccccccccccCCCceeEEEeeCCCCCCcc
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW----------KMDCFPALQMHSDWVRSVAWAPNLGLPKS 226 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~----------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 226 (302)
|+|.. ...|||+|.|+.+.|||+..-.. ....+....||...|.+++|+|.. +-
T Consensus 324 WSPh~-------------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e---PW 387 (422)
T KOG0264|consen 324 WSPHN-------------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE---PW 387 (422)
T ss_pred eCCCC-------------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC---Ce
Confidence 99975 47899999999999999864211 122334557999999999999985 68
Q ss_pred EEEEEecCCeEEEEEecc
Q 022111 227 TIASASQDGTVVIWTCAK 244 (302)
Q Consensus 227 ~l~s~s~D~~i~iwd~~~ 244 (302)
.|+|.++|+.+.||++..
T Consensus 388 ~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEEecCCceEEEeeccc
Confidence 999999999999999863
No 56
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2e-27 Score=215.73 Aligned_cols=258 Identities=17% Similarity=0.223 Sum_probs=182.3
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 6 IETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
++.||.+.|++++|+| ++++||+|+.|++|++|++.... ..++..+.+|...|.+++|+|. .+++|++++.|+
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dg 148 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADM 148 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCC
Confidence 3669999999999999 78899999999999999985431 1346778999999999999764 357999999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC-eEEEEeC
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG-VTSVSWA 158 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~ 158 (302)
+|+|||++++ .....+..|...|.+++|+|+ +.+|++++.|++|++||.++... ...+. .|... ...+.|.
T Consensus 149 tVrIWDl~tg---~~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~IrIwD~rsg~~--v~tl~-~H~~~~~~~~~w~ 220 (493)
T PTZ00421 149 VVNVWDVERG---KAVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKLNIIDPRDGTI--VSSVE-AHASAKSQRCLWA 220 (493)
T ss_pred EEEEEECCCC---eEEEEEcCCCCceEEEEEECC--CCEEEEecCCCEEEEEECCCCcE--EEEEe-cCCCCcceEEEEc
Confidence 9999999765 356678889999999999998 67999999999999999986432 22332 56443 4567787
Q ss_pred CCCCCCceeecccCCCceeEEEee----CCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEe-
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCG----CDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASAS- 232 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~----~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s- 232 (302)
+.. ..|++++ .|+.|++||+++.... +..... +...+....|+|++ +.|++++
T Consensus 221 ~~~--------------~~ivt~G~s~s~Dr~VklWDlr~~~~p---~~~~~~d~~~~~~~~~~d~d~----~~L~lggk 279 (493)
T PTZ00421 221 KRK--------------DLIITLGCSKSQQRQIMLWDTRKMASP---YSTVDLDQSSALFIPFFDEDT----NLLYIGSK 279 (493)
T ss_pred CCC--------------CeEEEEecCCCCCCeEEEEeCCCCCCc---eeEeccCCCCceEEEEEcCCC----CEEEEEEe
Confidence 753 4555543 4899999999864321 222222 23456667788885 6677766
Q ss_pred cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111 233 QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVV 298 (302)
Q Consensus 233 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~ 298 (302)
.|+.|++||++..... .........++.+++|.|.- .+ =.... -.++++... ...++....
T Consensus 280 gDg~Iriwdl~~~~~~--~~~~~~s~~~~~g~~~~pk~-~~-dv~~~Ei~r~~~l~~-~~i~pis~~ 341 (493)
T PTZ00421 280 GEGNIRCFELMNERLT--FCSSYSSVEPHKGLCMMPKW-SL-DTRKCEIARFYALTY-HSLYTIQML 341 (493)
T ss_pred CCCeEEEEEeeCCceE--EEeeccCCCCCcceEecccc-cc-cccceeeeEEEEecC-CeEEEEEEE
Confidence 5999999999864311 11112234567888888842 11 11122 357777643 335554443
No 57
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.6e-28 Score=208.27 Aligned_cols=252 Identities=18% Similarity=0.379 Sum_probs=194.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC----CeE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD----GQV 81 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D----~~i 81 (302)
.+..|.-.++-+.|+|.|.++|||...|+|||||.....--....++--.++|..|+|+.+ +++|+..++. +.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCC--CcEEEEEecCccceeEE
Confidence 4668988999999999999999999999999999865322222345556789999999864 7877776653 235
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
.+||- ++ .+..+.+|...|++++|-|.+ ..++++|++|+.|.+|+.. ++....-...|..-|.++.|+|++
T Consensus 132 F~~DS--G~---SvGei~GhSr~ins~~~KpsR-PfRi~T~sdDn~v~ffeGP---PFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 132 FLWDS--GN---SVGEITGHSRRINSVDFKPSR-PFRIATGSDDNTVAFFEGP---PFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred EEecC--CC---ccceeeccceeEeeeeccCCC-ceEEEeccCCCeEEEeeCC---CeeeeecccccccceeeEEECCCC
Confidence 56764 32 356788999999999999985 4689999999999999754 233322223677789999999974
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
.++||.|.|+.+.+||-+++... ..+..-.+|++.|.+|+|+||+ .+|+|+|.|+++||||
T Consensus 203 --------------~~Fat~gsDgki~iyDGktge~v-g~l~~~~aHkGsIfalsWsPDs----~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 203 --------------SRFATAGSDGKIYIYDGKTGEKV-GELEDSDAHKGSIFALSWSPDS----TQFLTVSADKTIKIWD 263 (603)
T ss_pred --------------CeEEEecCCccEEEEcCCCccEE-EEecCCCCccccEEEEEECCCC----ceEEEecCCceEEEEE
Confidence 89999999999999999887422 1122234899999999999995 8899999999999999
Q ss_pred eccCCc------------c-----eee-----------------------eeeccCCCcEEEEEEccCCCEEEEecCC-c
Q 022111 242 CAKEGE------------Q-----WEG-----------------------RVLKDFKTPVWSVSWSLTGNLLAVADAN-N 280 (302)
Q Consensus 242 ~~~~~~------------~-----~~~-----------------------~~~~~~~~~v~~~~~spdg~~la~~~~d-~ 280 (302)
+....- + |+. .+..+|...|.+++.+||+++|.+|+.| .
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 865320 0 110 0123566779999999999999999999 5
Q ss_pred eEEeeec
Q 022111 281 VTLWKEA 287 (302)
Q Consensus 281 i~~w~~~ 287 (302)
|.-|+..
T Consensus 344 I~~W~~~ 350 (603)
T KOG0318|consen 344 INSWDSG 350 (603)
T ss_pred EEEEecC
Confidence 8889964
No 58
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.8e-27 Score=217.39 Aligned_cols=230 Identities=14% Similarity=0.250 Sum_probs=168.7
Q ss_pred eeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-----eeEEEEecCCCC
Q 022111 29 ASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-----WTQAHTFNDHKS 103 (302)
Q Consensus 29 ~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-----~~~~~~~~~h~~ 103 (302)
||.++.+++|+.... ..+..+.+|.+.|.+++|+|. .+++||||+.|++|+|||+.+... ..+...+.+|..
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~-~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPC-FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 667889999987543 457788999999999999764 368999999999999999865321 123446788999
Q ss_pred CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111 104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC 183 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 183 (302)
.|.+++|+|+. ..+|++++.|++|++||++.... ...+ .|...|.+++|+|++ .+|++++.
T Consensus 127 ~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~--~~~i--~~~~~V~SlswspdG--------------~lLat~s~ 187 (568)
T PTZ00420 127 KISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKR--AFQI--NMPKKLSSLKWNIKG--------------NLLSGTCV 187 (568)
T ss_pred cEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcE--EEEE--ecCCcEEEEEECCCC--------------CEEEEEec
Confidence 99999999983 24578999999999999975432 2222 355679999999864 78899999
Q ss_pred CCcEEEEEEecCccccccccccccCCCceeEEE-----eeCCCCCCccEEEEEecCC----eEEEEEeccCCcceeeeee
Q 022111 184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVA-----WAPNLGLPKSTIASASQDG----TVVIWTCAKEGEQWEGRVL 254 (302)
Q Consensus 184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~-----~~p~~~~~~~~l~s~s~D~----~i~iwd~~~~~~~~~~~~~ 254 (302)
|+.|+|||++++ ..+.++.+|.+.+.+.. |+|++ .+|+|++.|+ .|+|||++....+.....+
T Consensus 188 D~~IrIwD~Rsg----~~i~tl~gH~g~~~s~~v~~~~fs~d~----~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 188 GKHMHIIDPRKQ----EIASSFHIHDGGKNTKNIWIDGLGGDD----NYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred CCEEEEEECCCC----cEEEEEecccCCceeEEEEeeeEcCCC----CEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 999999999876 34456788987655433 44664 6788888774 7999999854332211111
Q ss_pred ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
......+...-..++|.++++|+.| +|++|+...
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 2222333334445678999999888 799999853
No 59
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=7.2e-30 Score=201.73 Aligned_cols=244 Identities=16% Similarity=0.267 Sum_probs=194.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++.||+++|++.+++.+....|+++.|-+-++||--+ +..+.+| .|+..|.+++|+.+ .++|+||+.++.+||+|
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~t--gdelhsf-~hkhivk~~af~~d--s~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT--GDELHSF-EHKHIVKAVAFSQD--SNYLLTGGQEKLLRVFD 128 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh--hhhhhhh-hhhheeeeEEeccc--chhhhccchHHHhhhhh
Confidence 5789999999999999999999999999999999644 3345555 59999999999854 78999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
++... .+...+.+|.+.|+.+-|+..+ ..+++.++|++||+||.+++...+... .+..|+++..++++
T Consensus 129 ln~p~--App~E~~ghtg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG---- 196 (334)
T KOG0278|consen 129 LNRPK--APPKEISGHTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDG---- 196 (334)
T ss_pred ccCCC--CCchhhcCCCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCC----
Confidence 86543 3556788999999999998653 367777999999999998765433232 24558888888763
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.+++-+..+.|++||.++- ..+..+ .....|.+.+++|+. ..+++|++|..++-||..+.
T Consensus 197 -----------~ilTia~gssV~Fwdaksf----~~lKs~-k~P~nV~SASL~P~k----~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 197 -----------RILTIAYGSSVKFWDAKSF----GLLKSY-KMPCNVESASLHPKK----EFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred -----------CEEEEecCceeEEeccccc----cceeec-cCccccccccccCCC----ceEEecCcceEEEEEeccCC
Confidence 5677778889999998763 222222 134568999999985 78999999999999998865
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.+. ....++|.++|-+++|||||...|+|+.| +|+||++..
T Consensus 257 eEi--~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 257 EEI--GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred cee--eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 432 22247888999999999999999999999 799999843
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=200.23 Aligned_cols=211 Identities=21% Similarity=0.338 Sum_probs=176.6
Q ss_pred cccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 4 QKIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
.+.++.|+.+|.++.|++- ++.++++|.|++|+||+...+ ..+.++.||...|+...|+| ..+++++++|.|++++
T Consensus 97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~~~Iy~a~~sp-~~~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP--NSVQTFNGHNSCIYQAAFSP-HIPNLFASASGDGTLR 173 (311)
T ss_pred hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC--cceEeecCCccEEEEEecCC-CCCCeEEEccCCceEE
Confidence 3457789999999999864 568888899999999997653 35788999999999999976 5789999999999999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
+||++.... .+ .+..|+..|.|+.|+.-. ...|+||+.|+.|+.||++.-. ..+..+. +|...|+.++|+|..
T Consensus 174 lwdvr~~gk--~~-~i~ah~~Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~-gh~~AVRkvk~Sph~- 246 (311)
T KOG0277|consen 174 LWDVRSPGK--FM-SIEAHNSEILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLR-TPLFELN-GHGLAVRKVKFSPHH- 246 (311)
T ss_pred EEEecCCCc--ee-EEEeccceeEeecccccC-CcEEEecCCCceEEEEehhhcc-ccceeec-CCceEEEEEecCcch-
Confidence 999976542 22 377799999999999764 4689999999999999998543 3445664 899999999999965
Q ss_pred CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
-..||||+.|-++||||...+. .++.+..-|++.|..++||+.. +.++|+.+.|..+.||+.
T Consensus 247 ------------~~lLaSasYDmT~riw~~~~~d---s~~e~~~~HtEFv~g~Dws~~~---~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ------------ASLLASASYDMTVRIWDPERQD---SAIETVDHHTEFVCGLDWSLFD---PGQVASTGWDELLYVWNP 308 (311)
T ss_pred ------------hhHhhhccccceEEecccccch---hhhhhhhccceEEecccccccc---Cceeeecccccceeeecc
Confidence 2689999999999999987543 3455667899999999999863 689999999999999973
No 61
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.8e-28 Score=197.22 Aligned_cols=245 Identities=20% Similarity=0.299 Sum_probs=194.1
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
+..||+++|..+.|.+|+..++|+|.|++|+.||.++ ++.+..+++|...|..+.- ..-...+|.|++.|+++++||
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t--G~~~rk~k~h~~~vNs~~p-~rrg~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET--GKRIRKHKGHTSFVNSLDP-SRRGPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEeccc--ceeeehhccccceeeecCc-cccCCeEEEecCCCceEEEEe
Confidence 4559999999999999999999999999999999876 5678889999999988873 223356789999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
++... +++++. .+-+++++.|.-+ +..+.+|+-|+.|++||++..... ..+ .+|...|+.+..+|.+
T Consensus 162 ~R~k~---~~~t~~-~kyqltAv~f~d~--s~qv~sggIdn~ikvWd~r~~d~~--~~l-sGh~DtIt~lsls~~g---- 228 (338)
T KOG0265|consen 162 IRKKE---AIKTFE-NKYQLTAVGFKDT--SDQVISGGIDNDIKVWDLRKNDGL--YTL-SGHADTITGLSLSRYG---- 228 (338)
T ss_pred ecccc---hhhccc-cceeEEEEEeccc--ccceeeccccCceeeeccccCcce--EEe-ecccCceeeEEeccCC----
Confidence 98642 444443 3556899999855 568999999999999999754322 233 4899999999988864
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC----ceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD----WVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
.++.+=+.|+++++||++.-...-.|+..+.+|.. ....++|+|++ +.+.+|+.|+.+.+||
T Consensus 229 ----------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~----~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 229 ----------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG----TKITAGSADRFVYVWD 294 (338)
T ss_pred ----------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC----CccccccccceEEEee
Confidence 78899999999999999864333344555665432 24568999985 7899999999999999
Q ss_pred eccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEE
Q 022111 242 CAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTL 283 (302)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~ 283 (302)
..... ....+.+|.+.|..++|+|...+|.++++| +|.+
T Consensus 295 ~~~r~---~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 295 TTSRR---ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ccccc---EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 76532 123457888999999999999999999888 5655
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.3e-27 Score=196.37 Aligned_cols=245 Identities=17% Similarity=0.314 Sum_probs=186.3
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
..+|.+|++.|.+++.+|+.+++||||-|..-.||++.++ +....+.+|+..|+++.|+++ |.+||||..+|.|+|
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVLV 132 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccC--ceEEEecCCCccEEE
Confidence 3468899999999999999999999999999999999764 367789999999999999974 899999999999999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
|+..++. ....+..--..|.=+.|+|. +.+|++|+.||.+-.|.+...+..+ +-.+|..++++=.|.|++
T Consensus 133 ~~~stg~---~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~pdG-- 202 (399)
T KOG0296|consen 133 FKVSTGG---EQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIPDG-- 202 (399)
T ss_pred EEcccCc---eEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccCCC--
Confidence 9987763 23334333456777888995 6799999999999999987543222 223677777766665542
Q ss_pred CceeecccCCCceeEEEee-------------------------------------------------------------
Q 022111 164 GALVGLGLLDPVQKLASCG------------------------------------------------------------- 182 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~------------------------------------------------------------- 182 (302)
++++++.
T Consensus 203 ------------Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 203 ------------KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNC 270 (399)
T ss_pred ------------ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEe
Confidence 4444444
Q ss_pred -----------------------------------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111 183 -----------------------------------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 183 -----------------------------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 227 (302)
.||+|-|||+.... ++..-.|...|..+.|-++ .+
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t-----~~ 340 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNT-----DY 340 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----hheeccCCCceEEEEEcCc-----ch
Confidence 45555555543221 1222357778888888774 56
Q ss_pred EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|++++.||.||+||.|+... .-...+|..+|..++++|+++++++++.| ..++++..
T Consensus 341 l~t~c~~g~v~~wDaRtG~l---~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 341 LLTACANGKVRQWDARTGQL---KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred heeeccCceEEeeeccccce---EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 89999999999999886532 12346888899999999999999999998 68888753
No 63
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.4e-28 Score=195.70 Aligned_cols=257 Identities=21% Similarity=0.291 Sum_probs=176.5
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
....++.|.+|+|||.. .+++++|.|++||+|+++.......+....|.++|.+++|+. +|..+++|+.|+++++||
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd--dgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD--DGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc--CCceEEeeccCCceEEEE
Confidence 34567889999999954 566689999999999997632112245678999999999985 489999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-------ccCCCCeEEE---
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-------QAHPVGVTSV--- 155 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-------~~h~~~v~~~--- 155 (302)
+.++ +..++..|.++|+++.|-+......|+|||+|++++.||.+.........+. ..|+..|-..
T Consensus 101 L~S~----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r 176 (347)
T KOG0647|consen 101 LASG----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAER 176 (347)
T ss_pred ccCC----CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCC
Confidence 9886 3556778999999999987643457999999999999999865432222111 0111111100
Q ss_pred ---EeCCCCCCC-----------ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---------Cce
Q 022111 156 ---SWAPAMAPG-----------ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---------DWV 212 (302)
Q Consensus 156 ---~~~~~~~~~-----------~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---------~~v 212 (302)
.++....+. ..-.+....+....+-|+-.|.+-|..+..+..+ .-.+|+.|+ ..|
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCcc--CceeEEEeccCCCCCCceEEe
Confidence 011000000 0001112233445688999999999888765211 112233343 258
Q ss_pred eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111 213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 278 (302)
++|+|+|.. .+|+|++.||++.+||-+..... .....+..+|...+|+.+|.++|.|.+
T Consensus 255 Nsi~FhP~h----gtlvTaGsDGtf~FWDkdar~kL---k~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 255 NSIAFHPVH----GTLVTAGSDGTFSFWDKDARTKL---KTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cceEeeccc----ceEEEecCCceEEEecchhhhhh---hccCcCCCccceeEecCCCCEEEEEee
Confidence 899999974 78999999999999997653221 122456789999999999999988843
No 64
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.8e-28 Score=193.04 Aligned_cols=240 Identities=23% Similarity=0.365 Sum_probs=185.2
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+++|...|.+++|+.+|..||+|+-|+++++|+++......-....+|.+.|-.++|.|+ .++++++++.|++|++||+
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceEEEEEe
Confidence 568999999999999999999999999999999976432223345789999999999875 4789999999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-------------------------
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT------------------------- 141 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~------------------------- 141 (302)
+..+ +........+. .-+.|+|+ |.+++.++.|..|.+.|.++......
T Consensus 95 r~~k---~~~~i~~~~en-i~i~wsp~--g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 95 RSGK---CTARIETKGEN-INITWSPD--GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred ccCc---EEEEeeccCcc-eEEEEcCC--CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 8764 55555433344 44679998 67999999999999988764321000
Q ss_pred -------------eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111 142 -------------TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH 208 (302)
Q Consensus 142 -------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h 208 (302)
..-.++|+....++.|+ ++|++||+|+.|..+-+||+..- -|.+.+.-+
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~--------------p~GryfA~GsADAlvSLWD~~EL----iC~R~isRl 230 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFD--------------PDGRYFATGSADALVSLWDVDEL----ICERCISRL 230 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEEC--------------CCCceEeeccccceeeccChhHh----hhheeeccc
Confidence 00001333334444444 45799999999999999999753 688888889
Q ss_pred CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111 209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d 279 (302)
.-+|+.|+||-|+ ++||++|+|..|-|=++.+....|+ -...++..+|+|+|...+||.|.+|
T Consensus 231 dwpVRTlSFS~dg----~~lASaSEDh~IDIA~vetGd~~~e----I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 DWPVRTLSFSHDG----RMLASASEDHFIDIAEVETGDRVWE----IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCceEEEEeccCc----ceeeccCccceEEeEecccCCeEEE----eeccCCceeEEecCCCceeeEEecC
Confidence 9999999999885 7899999999998887776543332 2346788999999999999999665
No 65
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.9e-28 Score=199.76 Aligned_cols=250 Identities=24% Similarity=0.349 Sum_probs=201.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+.+.||++.|+.++.......+.+++.|.+.+||.++. +.++.+..||.+.|.+|+|.+ .+.+++++|.|++..||
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es--g~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES--GACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIW 217 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecc--ccceeeecccccceeeEEecc--ccceEEEccCCcchHHH
Confidence 34779999999998877677999999999999999976 568889999999999999975 37899999999999999
Q ss_pred Ec------CCCC-------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 85 KE------GNQN-------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 85 d~------~~~~-------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
.. ..++ -..++-.+++|...|.++.|-.. |+.++++++|++
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--g~Q~vTaSWDRT 295 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--GQQMVTASWDRT 295 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--cceeeeeecccc
Confidence 62 1100 01244568899999999999764 789999999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
-.+||++++... ..+ .+|....+.++-.|. .+++++.+.|.++++||.+.. +..+..|.|
T Consensus 296 AnlwDVEtge~v--~~L-tGHd~ELtHcstHpt--------------QrLVvTsSrDtTFRLWDFRea---I~sV~VFQG 355 (481)
T KOG0300|consen 296 ANLWDVETGEVV--NIL-TGHDSELTHCSTHPT--------------QRLVVTSSRDTTFRLWDFREA---IQSVAVFQG 355 (481)
T ss_pred ceeeeeccCcee--ccc-cCcchhccccccCCc--------------ceEEEEeccCceeEeccchhh---cceeeeecc
Confidence 999999865322 233 388888888776664 478999999999999999854 344567899
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
|.+.|+++.|+.+ ..+++||+|++|+|||++....+.. . -....++..++.+..+.+||.-.++ .|+|||+
T Consensus 356 HtdtVTS~vF~~d-----d~vVSgSDDrTvKvWdLrNMRsplA-T--IRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 356 HTDTVTSVVFNTD-----DRVVSGSDDRTVKVWDLRNMRSPLA-T--IRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cccceeEEEEecC-----CceeecCCCceEEEeeeccccCcce-e--eecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 9999999999976 5699999999999999986533211 1 2235678889999888899999877 6999998
Q ss_pred cC
Q 022111 287 AV 288 (302)
Q Consensus 287 ~~ 288 (302)
+.
T Consensus 428 nG 429 (481)
T KOG0300|consen 428 NG 429 (481)
T ss_pred CC
Confidence 63
No 66
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.7e-28 Score=202.68 Aligned_cols=207 Identities=24% Similarity=0.328 Sum_probs=175.3
Q ss_pred EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC
Q 022111 47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG 126 (302)
Q Consensus 47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~ 126 (302)
....+.+|.+-|.++++.|- +..++||+.|++++|||+.++ ....++.+|...|..+++|+-. .++.+++.|+
T Consensus 143 l~rVi~gHlgWVr~vavdP~--n~wf~tgs~DrtikIwDlatg---~LkltltGhi~~vr~vavS~rH--pYlFs~gedk 215 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPG--NEWFATGSADRTIKIWDLATG---QLKLTLTGHIETVRGVAVSKRH--PYLFSAGEDK 215 (460)
T ss_pred ehhhhhhccceEEEEeeCCC--ceeEEecCCCceeEEEEcccC---eEEEeecchhheeeeeeecccC--ceEEEecCCC
Confidence 34567899999999999653 679999999999999999887 3667889999999999999863 4899999999
Q ss_pred cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc
Q 022111 127 NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ 206 (302)
Q Consensus 127 ~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~ 206 (302)
.|+.||+....- .+-..+|...|.+++..|.- ..|+||+.|.++||||+++. ..+..+.
T Consensus 216 ~VKCwDLe~nkv---IR~YhGHlS~V~~L~lhPTl--------------dvl~t~grDst~RvWDiRtr----~~V~~l~ 274 (460)
T KOG0285|consen 216 QVKCWDLEYNKV---IRHYHGHLSGVYCLDLHPTL--------------DVLVTGGRDSTIRVWDIRTR----ASVHVLS 274 (460)
T ss_pred eeEEEechhhhh---HHHhccccceeEEEeccccc--------------eeEEecCCcceEEEeeeccc----ceEEEec
Confidence 999999975321 12224888999999988864 68999999999999999986 4567889
Q ss_pred cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
||..+|.+|.+.|.. -++++||.|++||+||++..+ ....+..|+..|.+++.+|.-..+|+++.|+++-|+.
T Consensus 275 GH~~~V~~V~~~~~d----pqvit~S~D~tvrlWDl~agk---t~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD----PQVITGSHDSTVRLWDLRAGK---TMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC----CceEEecCCceEEEeeeccCc---eeEeeecccceeeEEecCCchhhhhccCCccceeccC
Confidence 999999999998853 569999999999999998643 2344567788899999999999999999999999998
Q ss_pred cC
Q 022111 287 AV 288 (302)
Q Consensus 287 ~~ 288 (302)
.+
T Consensus 348 p~ 349 (460)
T KOG0285|consen 348 PE 349 (460)
T ss_pred Cc
Confidence 65
No 67
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1e-27 Score=211.45 Aligned_cols=242 Identities=22% Similarity=0.403 Sum_probs=193.6
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
-+++.|+++.|+++|.+||.|..+|+|.|||..+. +.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++
T Consensus 215 ~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 215 FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEEe
Confidence 34789999999999999999999999999998653 34567777 99999999996 5789999999999999997
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
.... ...++.+|...|-.+.|++| +.++|+|+.|+.+.|||..... ....+. .|...|..++|+|..
T Consensus 289 ~~~~--~~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~~Iwd~~~~~--p~~~~~-~H~aAVKA~awcP~q------ 355 (484)
T KOG0305|consen 289 ISQH--VVSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVVFIWDGLSPE--PKFTFT-EHTAAVKALAWCPWQ------ 355 (484)
T ss_pred cchh--hhhhhhcccceeeeeEECCC--CCeeccCCCccceEeccCCCcc--ccEEEe-ccceeeeEeeeCCCc------
Confidence 6543 22357889999999999998 6799999999999999984322 223343 799999999999964
Q ss_pred ecccCCCceeEEEe--eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEecc
Q 022111 168 GLGLLDPVQKLASC--GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAK 244 (302)
Q Consensus 168 ~~~~~~~~~~l~s~--~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~ 244 (302)
...||+| +.|++|++||..++. .+... .-.+.|.+|.|+|.. ..++.+-+ .+..|.||++.+
T Consensus 356 -------~~lLAsGGGs~D~~i~fwn~~~g~----~i~~v-dtgsQVcsL~Wsk~~---kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 356 -------SGLLATGGGSADRCIKFWNTNTGA----RIDSV-DTGSQVCSLIWSKKY---KELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred -------cCceEEcCCCcccEEEEEEcCCCc----Eeccc-ccCCceeeEEEcCCC---CEEEEecCCCCCcEEEEeccc
Confidence 3678887 459999999998763 22221 235679999999985 24454444 356799999876
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
... ...+.+|...|..+++||||..|++|+.| ++++|+.=
T Consensus 421 ~~~---~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 421 MKL---VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred cce---eeeecCCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 432 24457899999999999999999999998 89999963
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=6.3e-28 Score=196.15 Aligned_cols=253 Identities=21% Similarity=0.317 Sum_probs=196.7
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-------------CC---ceEEEEecCcccCeEEEEeeCCCCCC
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-------------SA---SQHLATLKGHRGPVWQVAWAHPKFGS 70 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-------------~~---~~~~~~~~~h~~~v~~v~~~~~~~~~ 70 (302)
..-|+.++.+.+|++||.++|+|+.|-.|+|.|++. .+ -+.+.+|..|..+|+.+.|.|. ..
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e~ 185 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--ET 185 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--hh
Confidence 557999999999999999999999999999999851 00 1357889999999999999653 68
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111 71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV 150 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~ 150 (302)
+|+|++.|++|+++|+......+..+.|+ -..+|.++.|+|. |.+|+.|.+-..+++||+.+..++-.......|+.
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPs--GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPS--GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCC--CceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 99999999999999986532212223343 4578999999997 78999999999999999986554433334457899
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc-cCC-CceeEEEeeCCCCCCccEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ-MHS-DWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~-~~v~~v~~~p~~~~~~~~l 228 (302)
.|+++.+++.+ ...++++.||.|+|||--++ .|+.++. .|. ..|.+..|.-++ ++|
T Consensus 263 ai~~V~Ys~t~--------------~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn~----kyi 320 (430)
T KOG0640|consen 263 AITQVRYSSTG--------------SLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKNG----KYI 320 (430)
T ss_pred ceeEEEecCCc--------------cEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccCC----eEE
Confidence 99999999864 78999999999999997765 5776664 464 468899998875 889
Q ss_pred EEEecCCeEEEEEeccCCcc---------------------------------------ee-------eeeeccCCCcEE
Q 022111 229 ASASQDGTVVIWTCAKEGEQ---------------------------------------WE-------GRVLKDFKTPVW 262 (302)
Q Consensus 229 ~s~s~D~~i~iwd~~~~~~~---------------------------------------~~-------~~~~~~~~~~v~ 262 (302)
++.+.|..+++|.+.+..-. |. .....+|.+.+.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R 400 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVR 400 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCce
Confidence 99999999999998653100 00 000123455666
Q ss_pred EEEEccCCCEEEEecCC-ceEEeee
Q 022111 263 SVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 263 ~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
.+.-||.+.-+.+++.| .+++|..
T Consensus 401 ~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 401 WIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EEEeCCCCCceeeecccceeeeeee
Confidence 67778888888888888 7999975
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=211.22 Aligned_cols=249 Identities=23% Similarity=0.374 Sum_probs=197.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--------------------------------------eE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--------------------------------------QH 47 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--------------------------------------~~ 47 (302)
...||+..|.+++++.+...++||+ .+.+++|+..+... ..
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l 446 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL 446 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhh
Confidence 3568999999999999888777764 66789998753211 01
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC--ceeE--------EEEecCCCCCeeEEEecCCCCCc
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--DWTQ--------AHTFNDHKSSVNSIAWAPHELGL 117 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~--~~~~--------~~~~~~h~~~i~~l~~~pd~~~~ 117 (302)
+.+..+|++.|+.++.+|+ ++.++|||.|.+|++||..-.. +.+. ..++. -.+.|.|+.+||| +.
T Consensus 447 ~Eti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk 521 (888)
T KOG0306|consen 447 VETIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GK 521 (888)
T ss_pred hhhhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--Cc
Confidence 2344689999999999875 7889999999999999963111 0011 11222 4578999999999 77
Q ss_pred EEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc
Q 022111 118 SLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW 197 (302)
Q Consensus 118 ~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~ 197 (302)
+||.+=.|++|++|-+.+-. +. ..+ .+|.-+|.++..+|+ ++.++|||.|++|++|-+.-|
T Consensus 522 ~LaVsLLdnTVkVyflDtlK-Ff-lsL-YGHkLPV~smDIS~D--------------SklivTgSADKnVKiWGLdFG-- 582 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLK-FF-LSL-YGHKLPVLSMDISPD--------------SKLIVTGSADKNVKIWGLDFG-- 582 (888)
T ss_pred EEEEEeccCeEEEEEeccee-ee-eee-cccccceeEEeccCC--------------cCeEEeccCCCceEEeccccc--
Confidence 99999999999999876431 11 233 489999999999886 489999999999999999876
Q ss_pred ccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec
Q 022111 198 KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD 277 (302)
Q Consensus 198 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~ 277 (302)
+|...+-+|.+.|.+|.|-|+. ..+.|++.|+.++-||-..-. .-..+.+|...||+++-+|+|.++++++
T Consensus 583 --DCHKS~fAHdDSvm~V~F~P~~----~~FFt~gKD~kvKqWDg~kFe---~iq~L~~H~~ev~cLav~~~G~~vvs~s 653 (888)
T KOG0306|consen 583 --DCHKSFFAHDDSVMSVQFLPKT----HLFFTCGKDGKVKQWDGEKFE---EIQKLDGHHSEVWCLAVSPNGSFVVSSS 653 (888)
T ss_pred --hhhhhhhcccCceeEEEEcccc----eeEEEecCcceEEeechhhhh---hheeeccchheeeeeEEcCCCCeEEecc
Confidence 7888999999999999999974 679999999999999876421 1234578888999999999999999999
Q ss_pred CC-ceEEeeecC
Q 022111 278 AN-NVTLWKEAV 288 (302)
Q Consensus 278 ~d-~i~~w~~~~ 288 (302)
+| +|++|...+
T Consensus 654 hD~sIRlwE~td 665 (888)
T KOG0306|consen 654 HDKSIRLWERTD 665 (888)
T ss_pred CCceeEeeeccC
Confidence 99 899998754
No 70
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.3e-26 Score=210.11 Aligned_cols=264 Identities=16% Similarity=0.224 Sum_probs=175.9
Q ss_pred ccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCc------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111 5 KIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSAS------QHLATLKGHRGPVWQVAWAHPKFGSILASCSY 77 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~ 77 (302)
..+.+|.+.|.+++|+|+ +.+||||+.|++|+||++..... .++..+.+|...|.+++|+|. ...+|+|++.
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~-g~~iLaSgS~ 146 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM-NYYIMCSSGF 146 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC-CCeEEEEEeC
Confidence 346789999999999997 78999999999999999854211 234567899999999999764 2346789999
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 78 DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 78 D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
|++|+|||++... ....+. |...|.+++|+|+ |.+|++++.|+.|++||.+.... ...+. +|...+.+..+
T Consensus 147 DgtIrIWDl~tg~---~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~IrIwD~Rsg~~--i~tl~-gH~g~~~s~~v 217 (568)
T PTZ00420 147 DSFVNIWDIENEK---RAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMHIIDPRKQEI--ASSFH-IHDGGKNTKNI 217 (568)
T ss_pred CCeEEEEECCCCc---EEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEEEEECCCCcE--EEEEe-cccCCceeEEE
Confidence 9999999997753 334444 5678999999998 67899999999999999986432 23333 67655433222
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccc--cccCCCceeEEEeeCCCCCCccEEEEE
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPA--LQMHSDWVRSVAWAPNLGLPKSTIASA 231 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~--~~~h~~~v~~v~~~p~~~~~~~~l~s~ 231 (302)
.... +..++.+|+|+|.|+ .|+|||++... ..+.. +..+.+.+.. .|.++. +..+++|
T Consensus 218 ~~~~---------fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~~~~ld~~~~~L~p-~~D~~t---g~l~lsG 281 (568)
T PTZ00420 218 WIDG---------LGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALVTMSIDNASAPLIP-HYDEST---GLIYLIG 281 (568)
T ss_pred Eeee---------EcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceEEEEecCCccceEE-eeeCCC---CCEEEEE
Confidence 1100 111246788888774 79999998532 12222 2223333322 333432 4789999
Q ss_pred ecCCeEEEEEeccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEEeeecC
Q 022111 232 SQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSVVE 299 (302)
Q Consensus 232 s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~~~~~ 299 (302)
+.|++||+|++.... ...+.. +..++.+++|.|... +=+-.-.-.|+++....+..++....-
T Consensus 282 kGD~tIr~~e~~~~~----~~~l~~~~s~~p~~g~~f~Pkr~-~dv~~cEi~R~~kl~~~~~i~pisf~v 346 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS----IRKVNEYKSCSPFRSFGFLPKQI-CDVYKCEIGRVYKNENNSSIRPISFYV 346 (568)
T ss_pred ECCCeEEEEEccCCc----EEeecccccCCCccceEEccccc-cCchhhhHhHHhhhcCCCeEEEEEEEe
Confidence 999999999996531 112222 346788999999632 212211235666654444455554443
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8.3e-27 Score=198.18 Aligned_cols=251 Identities=21% Similarity=0.298 Sum_probs=186.4
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
.+|.+.+.+++.++||++||+|+.|..|.||+..+ .+++..+++|.+.|.+++|-.. ...|++++.|+++++|++.
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t--~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT--LEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSID 274 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcc--cchhhcccccccceeeeeeecC--ccceeeeecCCceEEEehh
Confidence 38999999999999999999999999999999865 5678889999999999999642 4578999999999999986
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
.. ..+.++.+|.+.|..+....- ...+..|+.|+++++|++..... + .+ .+|...+.+++|-.+
T Consensus 275 ~~---s~vetlyGHqd~v~~IdaL~r--eR~vtVGgrDrT~rlwKi~eesq--l-if-rg~~~sidcv~~In~------- 338 (479)
T KOG0299|consen 275 QL---SYVETLYGHQDGVLGIDALSR--ERCVTVGGRDRTVRLWKIPEESQ--L-IF-RGGEGSIDCVAFIND------- 338 (479)
T ss_pred Hh---HHHHHHhCCccceeeechhcc--cceEEeccccceeEEEeccccce--e-ee-eCCCCCeeeEEEecc-------
Confidence 54 356778899999999987643 34555666999999999964422 1 12 266777888887543
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccc--cc----ccc--ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD--CF----PAL--QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~--~~----~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
..|+|||.+|.|.+|++.+....+. .- ..+ -.+..||++|+..|.. +.+|+||.+|.||+
T Consensus 339 --------~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s----dL~asGS~~G~vrL 406 (479)
T KOG0299|consen 339 --------EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS----DLLASGSWSGCVRL 406 (479)
T ss_pred --------cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC----ceEEecCCCCceEE
Confidence 5799999999999999865321110 00 011 1234599999999974 78999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeecCCc
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEAVDG 290 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~ 290 (302)
|.+..+-+.......-...+-|++++|+++|++|++|-.. .+=.|-...++
T Consensus 407 W~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k~~ 459 (479)
T KOG0299|consen 407 WKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLKSG 459 (479)
T ss_pred EEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEeecc
Confidence 9987653221111111245679999999999977777444 45556554433
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=195.78 Aligned_cols=250 Identities=20% Similarity=0.319 Sum_probs=196.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
.+.++...+....+++||.|+++.++|... .+.+..++||...|+.+.|+++ ...+++++.|..|++|......
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~Gh~kki~~v~~~~~--~~~v~~aSad~~i~vws~~~~s-- 294 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKGHTKKITSVKFHKD--LDTVITASADEIIRVWSVPLSS-- 294 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccCcceEEEEEEeccc--hhheeecCCcceEEeecccccc--
Confidence 456666666557899999999999999754 3467789999999999999764 5678999999999999875442
Q ss_pred eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111 93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL 172 (302)
Q Consensus 93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 172 (302)
+......|.++|+.+..+|. |.+|++++.|++..+.|.+++........+ .....+++.+|+|++
T Consensus 295 -~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDg----------- 359 (506)
T KOG0289|consen 295 -EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDG----------- 359 (506)
T ss_pred -CccccccccccceeeeeccC--CcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcCCc-----------
Confidence 33455679999999999997 789999999999999999866543322221 233468899999874
Q ss_pred CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111 173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR 252 (302)
Q Consensus 173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 252 (302)
-.|++|..|+.|+|||+++. .....|.+|.++|..|+|+.+| .+||++++|+.|++||+|..... . .
T Consensus 360 ---Lifgtgt~d~~vkiwdlks~----~~~a~Fpght~~vk~i~FsENG----Y~Lat~add~~V~lwDLRKl~n~-k-t 426 (506)
T KOG0289|consen 360 ---LIFGTGTPDGVVKIWDLKSQ----TNVAKFPGHTGPVKAISFSENG----YWLATAADDGSVKLWDLRKLKNF-K-T 426 (506)
T ss_pred ---eEEeccCCCceEEEEEcCCc----cccccCCCCCCceeEEEeccCc----eEEEEEecCCeEEEEEehhhccc-c-e
Confidence 78999999999999999876 3456788999999999999885 89999999999999999975432 1 1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeee
Q 022111 253 VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSV 297 (302)
Q Consensus 253 ~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~ 297 (302)
+..+...++.++.|.+.|.+|++++.+ .|++++- ....|.+++.
T Consensus 427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k-~~k~W~~~~~ 471 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK-KTKSWTEIKE 471 (506)
T ss_pred eeccccccceeEEEcCCCCeEEeecceeEEEEEec-ccccceeeeh
Confidence 222223379999999999999999766 5666653 4567887764
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-26 Score=214.76 Aligned_cols=256 Identities=27% Similarity=0.406 Sum_probs=197.6
Q ss_pred cc-ccceeEEEEccCCCEEEEee--CCCcEEEEeecC---------C-CceEEEEecCcccCeEEEEeeCCCCCCEEEEE
Q 022111 9 GH-EDTVHDVAMDFYGKRLATAS--SDSSIKIIGLSN---------S-ASQHLATLKGHRGPVWQVAWAHPKFGSILASC 75 (302)
Q Consensus 9 ~h-~~~v~~~~~s~~~~~l~s~~--~d~~v~lw~~~~---------~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~ 75 (302)
+| +..|.++..+||+..+|||| .|+.++||+.+. . -.+.+.++..|.+.|.|++|+++ |.+||+|
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAsG 87 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLASG 87 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEeec
Confidence 45 45789999999999999999 999999998631 1 12346677889999999999874 9999999
Q ss_pred eCCCeEEEEEcCCC---------------CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111 76 SYDGQVIIWKEGNQ---------------NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140 (302)
Q Consensus 76 s~D~~i~iwd~~~~---------------~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~ 140 (302)
|.|+.|.||+.... ..|+....+.+|...|..++|+|+ +.+|++++.|++|.+|+..+. .
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~lvS~s~DnsViiwn~~tF---~ 162 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSLLVSVSLDNSVIIWNAKTF---E 162 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccEEEEecccceEEEEccccc---e
Confidence 99999999987520 126677889999999999999998 669999999999999998754 2
Q ss_pred eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------------------cc
Q 022111 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------------------WK 198 (302)
Q Consensus 141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------------------~~ 198 (302)
......+|...|..+.|.|. |++|||-+.|++|+||+..+-. |.
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~--------------Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS 228 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPI--------------GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS 228 (942)
T ss_pred eeeeeecccccccceEECCc--------------cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC
Confidence 22223489999999999997 4899999999999999953310 00
Q ss_pred --------------------------cccccccccCCCceeEEEeeCCC--------C-CCc----cEEEEEecCCeEEE
Q 022111 199 --------------------------MDCFPALQMHSDWVRSVAWAPNL--------G-LPK----STIASASQDGTVVI 239 (302)
Q Consensus 199 --------------------------~~~~~~~~~h~~~v~~v~~~p~~--------~-~~~----~~l~s~s~D~~i~i 239 (302)
.+.-..|.||..++.++.|+|.. . ..+ ..+|+||.|++|.|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 01123467999999999999921 0 011 27999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|..... ++. .....=+...|..++|||||..|.+++-| +|.+.+..
T Consensus 309 W~T~~~-RPl-~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 309 WNTALP-RPL-FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred EecCCC-Cch-hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 987432 221 11122345679999999999888888788 78887764
No 74
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=186.18 Aligned_cols=245 Identities=18% Similarity=0.308 Sum_probs=186.7
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
...+..|..++++++.+ +.++||||.|-+|+|||+.. ...+..+-.|.+.|+++.|.+|.....|.+|+.||.|.+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k--~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK--RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccc--hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 45577999999999876 89999999999999999864 345677888999999999988743347899999999999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
|+. ..|.++++++.|.+.|+.++.+|. +++.++.+.|+.+++|++-.+..-....+ .+. .+.+.|+|.+
T Consensus 112 w~~---~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L--~~~--at~v~w~~~G-- 180 (362)
T KOG0294|consen 112 WRV---GSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNL--KNK--ATLVSWSPQG-- 180 (362)
T ss_pred EEc---CCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeecc--CCc--ceeeEEcCCC--
Confidence 986 357899999999999999999997 77888999999999999875443222222 222 3448899864
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
.+++.++.++ |-+|.+.+.. ..... .....+.|+.|-. +..+++|.+|+.|++||.+
T Consensus 181 ------------d~F~v~~~~~-i~i~q~d~A~----v~~~i-~~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 181 ------------DHFVVSGRNK-IDIYQLDNAS----VFREI-ENPKRILCATFLD-----GSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ------------CEEEEEeccE-EEEEecccHh----Hhhhh-hccccceeeeecC-----CceEEEecCCceEEEeccC
Confidence 6677777654 8889887542 11111 1123366666643 4689999999999999988
Q ss_pred cCCcceeeeeeccCCCcEEEEEE--ccCCCEEEEecCC-ceEEeeecCC
Q 022111 244 KEGEQWEGRVLKDFKTPVWSVSW--SLTGNLLAVADAN-NVTLWKEAVD 289 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~--spdg~~la~~~~d-~i~~w~~~~~ 289 (302)
+... ......|+..|.++.+ +|++.+|+++++| .|++||+..+
T Consensus 238 s~~~---~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 238 SDTP---LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CCcc---ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 6321 1233678888998884 5788999999999 6999998543
No 75
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=203.11 Aligned_cols=259 Identities=14% Similarity=0.192 Sum_probs=184.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
.+.+|+..|.++++.|.|..|+|||.|.+|+.||+.... .+....+. .-...|.+++|++. |..|+..+...+++
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqak 239 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQAK 239 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC--CCeEEEEecCccee
Confidence 466899999999999999999999999999999995422 11122221 23346899999864 66666677778999
Q ss_pred EEEcCCCCc---------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee-e--eeecccCCC
Q 022111 83 IWKEGNQND---------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD-T--TRIDQAHPV 150 (302)
Q Consensus 83 iwd~~~~~~---------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~-~--~~~~~~h~~ 150 (302)
|+|-....- ...+...++|...++|-+|+|+. ...++|++.|+++++|++....... . .....+...
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 998533211 11123456899999999999985 4579999999999999997543211 1 111123345
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l 228 (302)
.++++.|+|++ +.||+|..||.|.+||..+.... ..+..-.+|.. .|+||+||+|+ ++|
T Consensus 319 ~~tsC~~nrdg--------------~~iAagc~DGSIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg----~~L 379 (641)
T KOG0772|consen 319 PVTSCAWNRDG--------------KLIAAGCLDGSIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDG----NYL 379 (641)
T ss_pred CceeeecCCCc--------------chhhhcccCCceeeeecCCcccc-cceEeeeccCCCCceeEEEecccc----chh
Confidence 68999999974 78999999999999997543211 11222356876 89999999996 889
Q ss_pred EEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-----C--ceEEeee
Q 022111 229 ASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-----N--NVTLWKE 286 (302)
Q Consensus 229 ~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-----d--~i~~w~~ 286 (302)
+|-+.|.++++||++.-+.......-.....+-..+.|||+.++|++|.+ . ++.+++.
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 99999999999999875433211110111234567999999999999844 1 3777774
No 76
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.7e-25 Score=180.51 Aligned_cols=251 Identities=17% Similarity=0.249 Sum_probs=186.5
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-------------------------------------
Q 022111 3 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS------------------------------------- 45 (302)
Q Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~------------------------------------- 45 (302)
.-+.+..-...|+++.|+.+|.+|++++.|.+++|||..++..
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 3344555677899999999999999999999999999743211
Q ss_pred -----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEE
Q 022111 46 -----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120 (302)
Q Consensus 46 -----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~ 120 (302)
+.+..+.||...|..|+.+|- ++.++|+|.|++|++||++..+. ..-+ +...-..++|.|. |.++|
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~--~d~FlS~S~D~tvrLWDlR~~~c---qg~l--~~~~~pi~AfDp~--GLifA 156 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPK--DDTFLSSSLDKTVRLWDLRVKKC---QGLL--NLSGRPIAAFDPE--GLIFA 156 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCC--CCeEEecccCCeEEeeEecCCCC---ceEE--ecCCCcceeECCC--CcEEE
Confidence 335678899999999999864 57899999999999999986532 2111 2333456788887 88999
Q ss_pred EEecCCcEEEEEecCC--CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc
Q 022111 121 CGSSDGNISVFTATAD--GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK 198 (302)
Q Consensus 121 sg~~d~~v~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 198 (302)
.+.....|++||++.- +++....+...-....+.+.|+|+ |+.|+-+...+.+++.|.-+|.
T Consensus 157 ~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~d--------------GK~iLlsT~~s~~~~lDAf~G~-- 220 (311)
T KOG1446|consen 157 LANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPD--------------GKSILLSTNASFIYLLDAFDGT-- 220 (311)
T ss_pred EecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCC--------------CCEEEEEeCCCcEEEEEccCCc--
Confidence 9988889999999853 344444433333456788899886 4888888889999999998874
Q ss_pred cccccccccCCCce---eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111 199 MDCFPALQMHSDWV---RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV 275 (302)
Q Consensus 199 ~~~~~~~~~h~~~v---~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 275 (302)
...++.++...- .+.+|+||+ ++|++|+.||+|.+|++++... ..........++..+.|+|.-.++|+
T Consensus 221 --~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~vw~~~tg~~--v~~~~~~~~~~~~~~~fnP~~~mf~s 292 (311)
T KOG1446|consen 221 --VKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIHVWNLETGKK--VAVLRGPNGGPVSCVRFNPRYAMFVS 292 (311)
T ss_pred --EeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEEEEEcCCCcE--eeEecCCCCCCccccccCCceeeeee
Confidence 345555554332 577899996 8899999999999999976432 12222225678899999998878777
Q ss_pred ecCCceEEeeec
Q 022111 276 ADANNVTLWKEA 287 (302)
Q Consensus 276 ~~~d~i~~w~~~ 287 (302)
|+ ..+.+|-..
T Consensus 293 a~-s~l~fw~p~ 303 (311)
T KOG1446|consen 293 AS-SNLVFWLPD 303 (311)
T ss_pred cC-ceEEEEecc
Confidence 74 368888543
No 77
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=4.3e-26 Score=207.61 Aligned_cols=236 Identities=24% Similarity=0.356 Sum_probs=191.7
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+.||.+.|.++.|..-+.+|++|+.|+++++||... +++..++.+|...|.++... +.++++||.|.+|++|++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s--g~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST--GECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC--CcEEEEecCCCceEEEEEcc----CceEeeccCCceEEEEec
Confidence 669999999999987678999999999999999754 56788899999999999763 467889999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
+++ ..++.+.+|.++|+++..+ +.++++|+.|++|++|+...... +..+ .+|...|.++.+.+
T Consensus 319 ~n~---~~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~c--l~sl-~gH~~~V~sl~~~~------- 381 (537)
T KOG0274|consen 319 TNG---ACLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKC--LKSL-SGHTGRVYSLIVDS------- 381 (537)
T ss_pred cCc---ceEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhcee--eeee-cCCcceEEEEEecC-------
Confidence 865 3677888899999999997 34899999999999999984422 2344 47999999987653
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
...+++|+.|++|++||+.+.. +|+.++.+|.+.|.++.+. ++.|++++.|++|++||.....
T Consensus 382 --------~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~------~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 382 --------ENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLR------DNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred --------cceEEeeeeccceEeecCCchh---hhhhhhcCCcccccccccc------cceeEeccccccEEEeecccCc
Confidence 1579999999999999998753 6888999999999887664 3679999999999999987643
Q ss_pred cceeeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 247 EQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 247 ~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
. ...+.+ +...|.++++. ...+++++.+ .+++|+..
T Consensus 445 ~---~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 445 C---LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLR 482 (537)
T ss_pred e---eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecc
Confidence 2 223334 45678888876 3556666666 79999874
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=6.1e-26 Score=206.66 Aligned_cols=242 Identities=26% Similarity=0.381 Sum_probs=192.6
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
|...+.+..|. ..++.+++.|.++++|+... ...+.. +.||.+.|++++|.. .+.+|++|+.|+++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~--~~~i~~~l~GH~g~V~~l~~~~--~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN--GYLILTRLVGHFGGVWGLAFPS--GGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc--ceEEEeeccCCCCCceeEEEec--CCCEEEEEecCCcEEeEecCC
Confidence 34456666666 55888999999999999754 344555 999999999999963 468999999999999999877
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
+ .+.+.+.+|...|.++...+. .+++|+.|.+|++|++..... +..+. +|..+|.++..+
T Consensus 281 g---~C~~~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~--l~l~~-~h~~~V~~v~~~---------- 340 (537)
T KOG0274|consen 281 G---ECTHSLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGAC--LNLLR-GHTGPVNCVQLD---------- 340 (537)
T ss_pred C---cEEEEecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcce--EEEec-cccccEEEEEec----------
Confidence 6 488999999999999988653 788999999999999975432 23333 599999999875
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
+..+++|+.|++|++||+..+ +|+.++.||..+|.++.+.+. ..+++|+.|++|++||++...
T Consensus 341 ------~~~lvsgs~d~~v~VW~~~~~----~cl~sl~gH~~~V~sl~~~~~-----~~~~Sgs~D~~IkvWdl~~~~-- 403 (537)
T KOG0274|consen 341 ------EPLLVSGSYDGTVKVWDPRTG----KCLKSLSGHTGRVYSLIVDSE-----NRLLSGSLDTTIKVWDLRTKR-- 403 (537)
T ss_pred ------CCEEEEEecCceEEEEEhhhc----eeeeeecCCcceEEEEEecCc-----ceEEeeeeccceEeecCCchh--
Confidence 368999999999999999855 789999999999999988652 569999999999999998641
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS 296 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~ 296 (302)
.....+.+|.+-+.++.+ .+++|++++.| .|++||..+.+..+-..
T Consensus 404 ~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 404 KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeec
Confidence 112334566666765554 67899999988 69999987665554443
No 79
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.7e-27 Score=206.12 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=189.1
Q ss_pred cccccee---EEEEc-cCCCEEEEeeCCCcEEEEeecCCCc----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 9 GHEDTVH---DVAMD-FYGKRLATASSDSSIKIIGLSNSAS----QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 9 ~h~~~v~---~~~~s-~~~~~l~s~~~d~~v~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
.|...|. .+..+ |.+++|+|||.||.|++|++..... +.+.++..|++-|..+..... ++.|+|||.|-+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~--~~tlIS~SsDtT 96 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGN--GKTLISASSDTT 96 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcC--CCceEEecCCce
Confidence 3444554 34444 4467899999999999999854332 236778889999999887653 788999999999
Q ss_pred EEEEEcCCCCceeEEEEecCCCCCeeEEEe-cCCCCCcEEEEEecCCcEEEEEecCCCC-----ee---eeeecccCCCC
Q 022111 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAW-APHELGLSLACGSSDGNISVFTATADGG-----WD---TTRIDQAHPVG 151 (302)
Q Consensus 81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~-~pd~~~~~l~sg~~d~~v~~~~~~~~~~-----~~---~~~~~~~h~~~ 151 (302)
|++|+....+ ..++.++..|.+.|.|+++ -++ ...+|+|+.|+.|.+||+..... .. ...+..++...
T Consensus 97 VK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~s 173 (735)
T KOG0308|consen 97 VKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDS 173 (735)
T ss_pred EEEeecccCc-chhHhhhhcccchheeeeecccC--ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccc
Confidence 9999987655 2467788999999999999 454 45899999999999999985422 00 01111234445
Q ss_pred eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE
Q 022111 152 VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA 231 (302)
Q Consensus 152 v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 231 (302)
|.+++-++ .+..|++|+..+-+++||.+++... -.+.||++.|+++-.++|| +.++|+
T Consensus 174 iYSLA~N~--------------t~t~ivsGgtek~lr~wDprt~~ki----mkLrGHTdNVr~ll~~dDG----t~~ls~ 231 (735)
T KOG0308|consen 174 IYSLAMNQ--------------TGTIIVSGGTEKDLRLWDPRTCKKI----MKLRGHTDNVRVLLVNDDG----TRLLSA 231 (735)
T ss_pred eeeeecCC--------------cceEEEecCcccceEEeccccccce----eeeeccccceEEEEEcCCC----CeEeec
Confidence 55555443 3578999999999999999987433 3467999999999999985 899999
Q ss_pred ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 232 SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
|.||+||+||+....- .....-|+..||++.-+|+=..+.+|++| .|..-++.
T Consensus 232 sSDgtIrlWdLgqQrC---l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 232 SSDGTIRLWDLGQQRC---LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred CCCceEEeeeccccce---eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence 9999999999975321 12234566779999999999999999998 57776653
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-26 Score=182.29 Aligned_cols=221 Identities=30% Similarity=0.510 Sum_probs=178.0
Q ss_pred ccccccccceeEEEEcc--CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 5 KIETGHEDTVHDVAMDF--YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~--~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
..+.||+++|+.++|-- .|.+|||+++||+|.||..+++..........|++.|++|+|.|..-|-.||.++.||.|.
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 34679999999999964 7999999999999999998776555555677899999999998765678899999999999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCC-CC-----------cEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHE-LG-----------LSLACGSSDGNISVFTATADGGWDTTRIDQAHPV 150 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~-~~-----------~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~ 150 (302)
|.+.++.+.+...+....|.--|++++|.|-. +| ++|++|+.|+.|+||+...+ .|.......+|..
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~d 208 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKD 208 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcch
Confidence 99987665555555566799999999998852 12 56999999999999998754 5555443458999
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec--CccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN--GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 228 (302)
-|+.++|.|.... +...||||++||++.||-... ..|+.+.+.. ....+..++||+.+ +.|
T Consensus 209 wVRDVAwaP~~gl----------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~---f~~~~w~vSWS~sG----n~L 271 (299)
T KOG1332|consen 209 WVRDVAWAPSVGL----------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE---FPDVVWRVSWSLSG----NIL 271 (299)
T ss_pred hhhhhhhccccCC----------CceeeEEecCCCcEEEEEecCccCccccccccc---CCcceEEEEEeccc----cEE
Confidence 9999999996421 236799999999999998763 2344444433 46789999999985 889
Q ss_pred EEEecCCeEEEEEec
Q 022111 229 ASASQDGTVVIWTCA 243 (302)
Q Consensus 229 ~s~s~D~~i~iwd~~ 243 (302)
+.++.|..+.+|.-.
T Consensus 272 aVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCCcEEEEEEeC
Confidence 999999999999754
No 81
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=3.4e-26 Score=202.97 Aligned_cols=238 Identities=24% Similarity=0.353 Sum_probs=190.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..||+..|..+++.+ +..++++|.|+++++|+-..+.......+.+|.+.|.. ++|.+ .+.-.|++|+.|..+.+|.
T Consensus 10 l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e-~~~~~l~~g~~D~~i~v~~ 87 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE-SDKGRLVVGGMDTTIIVFK 87 (745)
T ss_pred eccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc-ccCcceEeecccceEEEEe
Confidence 569999999888765 55899999999999998755443344567788888876 89865 3345689999999999998
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
.... .+..++.+|+..|.+++...+ +. +++||+|.++++|....-. .. .++|+..|..+..-|.
T Consensus 88 ~~~~---~P~~~LkgH~snVC~ls~~~~--~~-~iSgSWD~TakvW~~~~l~----~~-l~gH~asVWAv~~l~e----- 151 (745)
T KOG0301|consen 88 LSQA---EPLYTLKGHKSNVCSLSIGED--GT-LISGSWDSTAKVWRIGELV----YS-LQGHTASVWAVASLPE----- 151 (745)
T ss_pred cCCC---CchhhhhccccceeeeecCCc--Cc-eEecccccceEEecchhhh----cc-cCCcchheeeeeecCC-----
Confidence 7554 478899999999999987654 43 9999999999999765321 12 3489999988876653
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
..++|||.|++||+|.-. +++++|.||.+.|+.+++-|+ ..|+|++.||.||.|++..+
T Consensus 152 ----------~~~vTgsaDKtIklWk~~------~~l~tf~gHtD~VRgL~vl~~-----~~flScsNDg~Ir~w~~~ge 210 (745)
T KOG0301|consen 152 ----------NTYVTGSADKTIKLWKGG------TLLKTFSGHTDCVRGLAVLDD-----SHFLSCSNDGSIRLWDLDGE 210 (745)
T ss_pred ----------CcEEeccCcceeeeccCC------chhhhhccchhheeeeEEecC-----CCeEeecCCceEEEEeccCc
Confidence 479999999999999763 457889999999999999887 45999999999999999542
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
. .....+|..-+++++..+++..+++++.| ++++|+..
T Consensus 211 ---~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 ---V-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ---e-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 1 12346778889999988888888899899 89999965
No 82
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=191.83 Aligned_cols=216 Identities=25% Similarity=0.512 Sum_probs=166.7
Q ss_pred cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC-------------ceeEEEEecCCCCCeeEEEecCCCCCcE
Q 022111 52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN-------------DWTQAHTFNDHKSSVNSIAWAPHELGLS 118 (302)
Q Consensus 52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~-------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~ 118 (302)
..|.+.+..++..+-....++|+-+..|.|.||++.... ...++.++.+|...-..|+|||-..| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 357777777776543235688889999999999985321 13567889999999999999996544 5
Q ss_pred EEEEecCCcEEEEEecCCCCeee--eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111 119 LACGSSDGNISVFTATADGGWDT--TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 119 l~sg~~d~~v~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
|++|..-+.|++|...+ +.|.. ..+. +|+..|..++|+|.. ...|+|||.|++|+|||++.+.
T Consensus 227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~-gH~~SVEDLqWSptE-------------~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-GSWKVDQRPFT-GHTKSVEDLQWSPTE-------------DGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred cccCccccceEeeeecc-CceeecCcccc-ccccchhhhccCCcc-------------CceEEeeecCceEEEEEecCCC
Confidence 89999999999998876 56654 3343 699999999999975 3789999999999999999874
Q ss_pred cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEE
Q 022111 197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAV 275 (302)
Q Consensus 197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~ 275 (302)
.+ .++. .+.|.+-|+-|+|+.+. .+||+|++||+++|||+|.-+........+-|+.+|++|+|+|. ...|++
T Consensus 292 ~~-~~~~-~kAh~sDVNVISWnr~~----~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 292 KK-AAVS-TKAHNSDVNVISWNRRE----PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred cc-ceeE-eeccCCceeeEEccCCc----ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 33 2332 37899999999999774 48999999999999999864321112234678899999999994 355666
Q ss_pred ecCC-ceEEeeecCC
Q 022111 276 ADAN-NVTLWKEAVD 289 (302)
Q Consensus 276 ~~~d-~i~~w~~~~~ 289 (302)
++.| .|.|||++.+
T Consensus 366 sg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVE 380 (440)
T ss_pred ccCCCcEEEEEeecc
Confidence 6566 7999998653
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.4e-25 Score=170.70 Aligned_cols=250 Identities=22% Similarity=0.334 Sum_probs=187.7
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce---EEEEecCcccCeEEEEeeCC--CCCCEEEEEeC-CCe
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ---HLATLKGHRGPVWQVAWAHP--KFGSILASCSY-DGQ 80 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~---~~~~~~~h~~~v~~v~~~~~--~~~~~l~s~s~-D~~ 80 (302)
...|++.|++.+|+|+|+.+|+|+.|++|++.-+...+.. +-..+.-|.+.|+.++|-.+ ..+.+|++++. |..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 3468899999999999999999999999999877543321 22345669999999999643 23568888764 544
Q ss_pred EEEEEcCCCCceeEEEEecCCCCCeeEE-EecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC-----CCCeEE
Q 022111 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSI-AWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH-----PVGVTS 154 (302)
Q Consensus 81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l-~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h-----~~~v~~ 154 (302)
|.+=|...+ ...+.+.+|.+-|.++ .|+ +.++++|+.|++|++||++-........-. -| ...|.+
T Consensus 165 iy~tdc~~g---~~~~a~sghtghilalyswn----~~m~~sgsqdktirfwdlrv~~~v~~l~~~-~~~~glessavaa 236 (350)
T KOG0641|consen 165 IYITDCGRG---QGFHALSGHTGHILALYSWN----GAMFASGSQDKTIRFWDLRVNSCVNTLDND-FHDGGLESSAVAA 236 (350)
T ss_pred EEEeecCCC---CcceeecCCcccEEEEEEec----CcEEEccCCCceEEEEeeeccceeeeccCc-ccCCCcccceeEE
Confidence 544454443 4677889999999887 454 669999999999999999854333221110 11 234667
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
++..|. +++|++|-.|...-+||++.+ ..++.+..|...|+|+.|+|.. .+++++|.|
T Consensus 237 v~vdps--------------grll~sg~~dssc~lydirg~----r~iq~f~phsadir~vrfsp~a----~yllt~syd 294 (350)
T KOG0641|consen 237 VAVDPS--------------GRLLASGHADSSCMLYDIRGG----RMIQRFHPHSADIRCVRFSPGA----HYLLTCSYD 294 (350)
T ss_pred EEECCC--------------cceeeeccCCCceEEEEeeCC----ceeeeeCCCccceeEEEeCCCc----eEEEEeccc
Confidence 776665 589999999999999999987 4577888999999999999974 789999999
Q ss_pred CeEEEEEeccCCc-ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 235 GTVVIWTCAKEGE-QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 235 ~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
-.|++=|++..-. +..-.+..+|+..+-.+.|.|+.--+++.+.| ++.+|..
T Consensus 295 ~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 295 MKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 9999999875211 11122347888999999999987555666666 8999964
No 84
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=6.9e-26 Score=188.41 Aligned_cols=257 Identities=23% Similarity=0.406 Sum_probs=194.5
Q ss_pred cccccceeEEEEccCC--CEEEEeeCCCcEEEEeecCC--------------CceEEEEecCcccCeEEEEeeCCCCCCE
Q 022111 8 TGHEDTVHDVAMDFYG--KRLATASSDSSIKIIGLSNS--------------ASQHLATLKGHRGPVWQVAWAHPKFGSI 71 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~--------------~~~~~~~~~~h~~~v~~v~~~~~~~~~~ 71 (302)
-+|.+.++.+..++.+ .+.|+-+..|.|+||++... ..+++.++.+|.+.=++|+|||-..| .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g-~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG-R 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc-c
Confidence 3688888888877765 57777788899999998311 12467889999999999999985444 4
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEE-EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111 72 LASCSYDGQVIIWKEGNQNDWTQA-HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV 150 (302)
Q Consensus 72 l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~ 150 (302)
|+||.--+.|++|...+ +.|.-- ..|.+|+..|-.|.|||.+. ..+++||.|++|+|||.+.......... .+|..
T Consensus 227 LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~s 303 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTED-GVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNS 303 (440)
T ss_pred cccCccccceEeeeecc-CceeecCccccccccchhhhccCCccC-ceEEeeecCceEEEEEecCCCccceeEe-eccCC
Confidence 67888888999999877 455432 34778999999999999875 4799999999999999986532222222 48999
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 230 (302)
.|+.+.|+... .+||+|+.||+++|||++.-+.. ..+..|+-|+.+|+||.|+|.. ...|++
T Consensus 304 DVNVISWnr~~--------------~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e---~s~iaa 365 (440)
T KOG0302|consen 304 DVNVISWNRRE--------------PLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE---DSVIAA 365 (440)
T ss_pred ceeeEEccCCc--------------ceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc---CceEEe
Confidence 99999998753 48999999999999999865322 4566788999999999999975 478999
Q ss_pred EecCCeEEEEEeccCCcc-----e--------eeeeeccC--CCcEEEEEEccCC-CEEEEecCCceEEeee
Q 022111 231 ASQDGTVVIWTCAKEGEQ-----W--------EGRVLKDF--KTPVWSVSWSLTG-NLLAVADANNVTLWKE 286 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~~~~-----~--------~~~~~~~~--~~~v~~~~~spdg-~~la~~~~d~i~~w~~ 286 (302)
++.|..|.|||+..+... . ...++.=| ...+..+.|+++- -+|++.+.+++.+|+.
T Consensus 366 sg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt 437 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT 437 (440)
T ss_pred ccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence 999999999999654220 0 01122112 2347789999853 4666777788888874
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=2.3e-25 Score=181.01 Aligned_cols=235 Identities=22% Similarity=0.297 Sum_probs=172.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
++....++.|.++.|++.+..|++++.||++++|++... .....+ .|++++.+.+|.+ ...+++|+-|+.|+.+
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~-~~~~plL~c~F~d---~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKF-KHGAPLLDCAFAD---ESTIVTGGLDGQVRRY 80 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhhe-ecCCceeeeeccC---CceEEEeccCceEEEE
Confidence 444566889999999999889999999999999998653 222233 5899999999964 3578999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|++.++ ...+..|.++|.|+.+++-.+ .+++|++|++|++||.+.... ..... ...+|.++..+
T Consensus 81 Dln~~~----~~~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~--~~~~d--~~kkVy~~~v~------ 144 (323)
T KOG1036|consen 81 DLNTGN----EDQIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVV--VGTFD--QGKKVYCMDVS------ 144 (323)
T ss_pred EecCCc----ceeeccCCCceEEEEeeccCC--eEEEcccCccEEEEecccccc--ccccc--cCceEEEEecc------
Confidence 998764 335667999999999997643 699999999999999874211 11111 12245554432
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccc--------------------------------------------cc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--------------------------------------------MD 200 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--------------------------------------------~~ 200 (302)
+..|+.|+.|+.+.+||+++.... ..
T Consensus 145 ----------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 145 ----------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS 214 (323)
T ss_pred ----------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh
Confidence 356777778888888887652100 00
Q ss_pred cccccccCCC---------ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC
Q 022111 201 CFPALQMHSD---------WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN 271 (302)
Q Consensus 201 ~~~~~~~h~~---------~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 271 (302)
....|+.|.. +|++|+|+|-. .+||||+.||.|-+||+...++. ..+..++..|.+++|+-||.
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~----~tfaTgGsDG~V~~Wd~~~rKrl---~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH----GTFATGGSDGIVNIWDLFNRKRL---KQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEecccc----ceEEecCCCceEEEccCcchhhh---hhccCCCCceEEEEeccCCC
Confidence 1122444432 69999999973 78999999999999999764322 22356677799999999999
Q ss_pred EEEEecC
Q 022111 272 LLAVADA 278 (302)
Q Consensus 272 ~la~~~~ 278 (302)
.||+|++
T Consensus 288 ~LAia~s 294 (323)
T KOG1036|consen 288 LLAIASS 294 (323)
T ss_pred eEEEEec
Confidence 9999965
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=4.3e-27 Score=197.52 Aligned_cols=264 Identities=24% Similarity=0.314 Sum_probs=192.8
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
.....|.+.|..+-|-++...|++||.|..|++|++..+....+.+|.|-.++|+.+.|.++ ++.+++.+.|+.+++|
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceeee
Confidence 34568999999999999888999999999999999876665667888888899999999765 7889999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee--------------eeeecccCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD--------------TTRIDQAHPV 150 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~--------------~~~~~~~h~~ 150 (302)
++... ...+++.+|.++|+++.|.... ..+++|+.|.+|++||+....+.. ...+..+|..
T Consensus 247 nvd~~---r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~D 321 (459)
T KOG0288|consen 247 NVDSL---RLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFD 321 (459)
T ss_pred eccch---hhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccc
Confidence 98765 3677899999999999998653 359999999999999986532211 0111123433
Q ss_pred CeEEEEeCCCC--------CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc--cccccccccCCCceeEEEeeCC
Q 022111 151 GVTSVSWAPAM--------APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK--MDCFPALQMHSDWVRSVAWAPN 220 (302)
Q Consensus 151 ~v~~~~~~~~~--------~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~--~~~~~~~~~h~~~v~~v~~~p~ 220 (302)
+-. -.|+... ..+.+.++....++..|.+++.|.++.+.|+++.... +.......+|. .+.+.|||+
T Consensus 322 kkv-RfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd 398 (459)
T KOG0288|consen 322 KKV-RFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPD 398 (459)
T ss_pred cce-EEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCC
Confidence 210 0122100 0122233444456778999999999999999875311 11111112333 788999999
Q ss_pred CCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCC--cEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT--PVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
+ .++|+||.||.|+||++.+.+-. ..+..... .|.+++|+|.|..|++++.+ .+++|.
T Consensus 399 ~----~YvaAGS~dgsv~iW~v~tgKlE---~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 G----SYVAAGSADGSVYIWSVFTGKLE---KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred C----ceeeeccCCCcEEEEEccCceEE---EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 5 78999999999999999865421 22232222 59999999999999999988 699994
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.7e-26 Score=185.90 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=197.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceE------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQH------LATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
+..|.+..+.+..|+|||++|++|+.||.|.+|+..++.... -..+.-|.++|.|++|+.+ ...||+|+.||
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDG 285 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDG 285 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCC
Confidence 345777788999999999999999999999999986543211 1234457899999999865 78999999999
Q ss_pred eEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111 80 QVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 158 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 158 (302)
.|++|.++++. ++..|. .|..-|+|+.|+.| +..+.+++-|.++++--+..+... ..++ +|..-|+...|.
T Consensus 286 kIKvWri~tG~---ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGlKSGK~L--KEfr-GHsSyvn~a~ft 357 (508)
T KOG0275|consen 286 KIKVWRIETGQ---CLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGLKSGKCL--KEFR-GHSSYVNEATFT 357 (508)
T ss_pred cEEEEEEecch---HHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEeccccchhH--HHhc-CccccccceEEc
Confidence 99999998863 566665 79999999999998 458999999999999877644332 3444 888889888887
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc--cCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ--MHSDWVRSVAWAPNLGLPKSTIASASQDGT 236 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~ 236 (302)
++ |..+++++.|++|++|+.++. +|+.+|. +..-+|+++..-|.. +.+++.+....+
T Consensus 358 ~d--------------G~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKn---peh~iVCNrsnt 416 (508)
T KOG0275|consen 358 DD--------------GHHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKN---PEHFIVCNRSNT 416 (508)
T ss_pred CC--------------CCeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCC---CceEEEEcCCCe
Confidence 75 478999999999999999876 5776665 356679999988874 578999999999
Q ss_pred EEEEEeccCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCCc-eEEeeecCCceEEEe
Q 022111 237 VVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQV 295 (302)
Q Consensus 237 i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~~~~~~~~~~ 295 (302)
+.|-++... -...+. +..++..-+...||.|.++.+.+.|. +.-+.. .+|.+|..
T Consensus 417 v~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~-~sG~LE~t 474 (508)
T KOG0275|consen 417 VYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSV-LSGKLERT 474 (508)
T ss_pred EEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEe-ecCceeee
Confidence 999887632 111121 22345577888999999999998885 555554 35665544
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=199.51 Aligned_cols=235 Identities=23% Similarity=0.389 Sum_probs=183.5
Q ss_pred ccccccceeE-EEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 7 ETGHEDTVHD-VAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 7 ~~~h~~~v~~-~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+.+|.+-|.. +|+.+ ++-.|++|+.|.++.+|...+ ..++..|++|+..|.+++-. .++. ++|||+|.++++|
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--~~P~~~LkgH~snVC~ls~~--~~~~-~iSgSWD~TakvW 127 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--AEPLYTLKGHKSNVCSLSIG--EDGT-LISGSWDSTAKVW 127 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCC--CCchhhhhccccceeeeecC--CcCc-eEecccccceEEe
Confidence 5567776655 77774 445699999999999999865 45788999999999999743 3355 8999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
.+.. +...+.+|+..|.+++.-|+. .++||+.|++|++|...+ ....+. +|+.-|+.++.-++
T Consensus 128 ~~~~-----l~~~l~gH~asVWAv~~l~e~---~~vTgsaDKtIklWk~~~----~l~tf~-gHtD~VRgL~vl~~---- 190 (745)
T KOG0301|consen 128 RIGE-----LVYSLQGHTASVWAVASLPEN---TYVTGSADKTIKLWKGGT----LLKTFS-GHTDCVRGLAVLDD---- 190 (745)
T ss_pred cchh-----hhcccCCcchheeeeeecCCC---cEEeccCcceeeeccCCc----hhhhhc-cchhheeeeEEecC----
Confidence 7643 455688999999999998873 699999999999996532 223443 89999999987664
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.-|+||+.||.|++|++.. .++.+..||++.|++++..++. ..|+|+++|+++|||+...
T Consensus 191 -----------~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~~~~~----~~Ivs~gEDrtlriW~~~e 250 (745)
T KOG0301|consen 191 -----------SHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISMALSD----GLIVSTGEDRTLRIWKKDE 250 (745)
T ss_pred -----------CCeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEecCCC----CeEEEecCCceEEEeecCc
Confidence 3699999999999999954 4677888999999999955442 6799999999999999763
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
.. ....-....||++.+-++|++++.+++..|++|....
T Consensus 251 ~~-----q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 251 CV-----QVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eE-----EEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 21 1222223469999999999876555444799998753
No 89
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.8e-26 Score=197.24 Aligned_cols=213 Identities=20% Similarity=0.347 Sum_probs=169.0
Q ss_pred eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111 46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125 (302)
Q Consensus 46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d 125 (302)
+.+.++.||...|+++.|.|. .+.+|++++.|+.|+||++.... .++.+|.+|+.+|.+++|+++ |..+.+++.|
T Consensus 205 k~~~~~~gH~kgvsai~~fp~-~~hLlLS~gmD~~vklW~vy~~~--~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD 279 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPK-KGHLLLSGGMDGLVKLWNVYDDR--RCLRTFKGHRKPVRDASFNNC--GTSFLSASFD 279 (503)
T ss_pred hheeeccCCccccchhhhccc-eeeEEEecCCCceEEEEEEecCc--ceehhhhcchhhhhhhhcccc--CCeeeeeecc
Confidence 346788999999999999864 48999999999999999986633 588999999999999999988 7799999999
Q ss_pred CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205 (302)
Q Consensus 126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~ 205 (302)
+.+++||.+++... ..+. -...+.++.|.|+. ...|++|+.|+.|+.||++++ +.++++
T Consensus 280 ~~lKlwDtETG~~~--~~f~--~~~~~~cvkf~pd~-------------~n~fl~G~sd~ki~~wDiRs~----kvvqeY 338 (503)
T KOG0282|consen 280 RFLKLWDTETGQVL--SRFH--LDKVPTCVKFHPDN-------------QNIFLVGGSDKKIRQWDIRSG----KVVQEY 338 (503)
T ss_pred eeeeeeccccceEE--EEEe--cCCCceeeecCCCC-------------CcEEEEecCCCcEEEEeccch----HHHHHH
Confidence 99999999865432 2322 12346889999874 367899999999999999988 466778
Q ss_pred ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc---------------------ceee------ee-----
Q 022111 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE---------------------QWEG------RV----- 253 (302)
Q Consensus 206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~---------------------~~~~------~~----- 253 (302)
..|-+.|+++.|-|++ ..+++.++|++++||+.+..-. .|.. .+
T Consensus 339 d~hLg~i~~i~F~~~g----~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEG----RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred HhhhhheeeeEEccCC----ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 8899999999999985 7899999999999999765310 0000 00
Q ss_pred -----------eccCC--CcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 254 -----------LKDFK--TPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 254 -----------~~~~~--~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..+|. +--..+.|||||++|++|+.+ .+.+||-..
T Consensus 415 ~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 415 VPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred ccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 01111 123468899999999999999 799999643
No 90
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.6e-27 Score=209.98 Aligned_cols=240 Identities=21% Similarity=0.346 Sum_probs=198.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+..|...|.++..-..++.+++|+.|-.+.||.+... ..+..+.+|+.+|.+|.|..+ ..+|++|+.+|+|++||+
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK~wDl 99 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIKVWDL 99 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcc--hhhhcccccCCceeeeeh
Confidence 4468888888887667899999999999999998543 245678999999999999764 468999999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
+.. ..++++.+|...+..+.|+|- +.+.|+|+.|..+++||.+..++.. .. .+|...|..+.|+|++
T Consensus 100 eeA---k~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~iwD~Rk~Gc~~--~~-~s~~~vv~~l~lsP~G----- 166 (825)
T KOG0267|consen 100 EEA---KIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKIWDIRKKGCSH--TY-KSHTRVVDVLRLSPDG----- 166 (825)
T ss_pred hhh---hhhhhhhccccCcceeeeccc--eEEeccccccccceehhhhccCcee--ee-cCCcceeEEEeecCCC-----
Confidence 875 356789999999999999997 7789999999999999998766543 22 3688899999999974
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
.++++++.|.+++|||+..+ +...+|..|++.|.++.|+|.. -.+++||.|+++++||+++-.
T Consensus 167 ---------r~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e----~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 167 ---------RWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLE----VLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred ---------ceeeccCCcceeeeeccccc----ccccccccccccccccccCchh----hhhccCCCCceeeeeccceeE
Confidence 79999999999999999876 5667899999999999999974 579999999999999997410
Q ss_pred cceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL 283 (302)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~ 283 (302)
.-.....+...|.+++|+|+|+.+++|...++..
T Consensus 230 ---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 230 ---VISSGKPETDGVRSLAFNPDGKIVLSGEQISLSE 263 (825)
T ss_pred ---EeeccCCccCCceeeeecCCceeeecCchhhhhh
Confidence 0111234456799999999999999997766653
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-25 Score=188.00 Aligned_cols=249 Identities=22% Similarity=0.290 Sum_probs=189.7
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce--EE------------EEe--cCcccCeEEEEeeCCCCCC
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HL------------ATL--KGHRGPVWQVAWAHPKFGS 70 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~--~~------------~~~--~~h~~~v~~v~~~~~~~~~ 70 (302)
...|.-+|.++++++++++.++++.|++|.-|++..+... .+ ... ++|...+.+++.+++ ++
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gk 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GK 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--Cc
Confidence 4479999999999999999999999999999998543311 00 011 378899999999875 89
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC
Q 022111 71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV 150 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~ 150 (302)
+||+|+.|..|.||+..+.. .++.+++|.+.|.+++|-.. ...+.+++.|+.|++|++..... .....+|..
T Consensus 216 ylatgg~d~~v~Iw~~~t~e---hv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~~~~~s~---vetlyGHqd 287 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLE---HVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWSIDQLSY---VETLYGHQD 287 (479)
T ss_pred EEEecCCCceEEEecCcccc---hhhcccccccceeeeeeecC--ccceeeeecCCceEEEehhHhHH---HHHHhCCcc
Confidence 99999999999999998764 67789999999999999644 33799999999999999864321 122237888
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 230 (302)
.|..+.-.. .++.+-.|+.|+++++|++.... .-.+.+|.+.+-|++|-.+ .++++
T Consensus 288 ~v~~IdaL~--------------reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~-----~Hfvs 343 (479)
T KOG0299|consen 288 GVLGIDALS--------------RERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFIND-----EHFVS 343 (479)
T ss_pred ceeeechhc--------------ccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecc-----cceee
Confidence 887764322 23444445699999999996531 2246789999999999765 67999
Q ss_pred EecCCeEEEEEeccCCcceeeeeec---------cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111 231 ASQDGTVVIWTCAKEGEQWEGRVLK---------DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD 289 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~ 289 (302)
||+||.|.+|++...+..+...... ....+|.+++-.|..+++|+|+.+ .|+||...++
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9999999999987643322211111 112378899999999999999988 6999998764
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.9e-25 Score=179.95 Aligned_cols=221 Identities=19% Similarity=0.283 Sum_probs=170.7
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC---------------CceeEEEEecCCCCCeeEEEecCC
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ---------------NDWTQAHTFNDHKSSVNSIAWAPH 113 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~---------------~~~~~~~~~~~h~~~i~~l~~~pd 113 (302)
..+..|++++++.+|+++ |.++||||.|..|+|.|++.. ..-..+.++..|.++|+++.|+|.
T Consensus 106 ~ylt~HK~~cR~aafs~D--G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPD--GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEEeecccceeeeeeCCC--CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 456789999999999875 899999999999999997511 011245678889999999999997
Q ss_pred CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe
Q 022111 114 ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY 193 (302)
Q Consensus 114 ~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~ 193 (302)
..+|++|+.|++|++||..+.....-...- .-..+|.++.|.|.+ .+|+.|..-.++++||+.
T Consensus 184 --e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsG--------------efllvgTdHp~~rlYdv~ 246 (430)
T KOG0640|consen 184 --ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSG--------------EFLLVGTDHPTLRLYDVN 246 (430)
T ss_pred --hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCC--------------ceEEEecCCCceeEEecc
Confidence 459999999999999998754321111111 124568999999974 789999999999999998
Q ss_pred cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCE
Q 022111 194 NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNL 272 (302)
Q Consensus 194 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~ 272 (302)
+.+--+.+. .-.+|++.|++|.+++.+ +.-+++|.||.|||||-.++. ....+...| +..|.+..|..+|++
T Consensus 247 T~Qcfvsan-Pd~qht~ai~~V~Ys~t~----~lYvTaSkDG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 247 TYQCFVSAN-PDDQHTGAITQVRYSSTG----SLYVTASKDGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred ceeEeeecC-cccccccceeEEEecCCc----cEEEEeccCCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeE
Confidence 753211221 236899999999999985 789999999999999976532 111222233 457999999999999
Q ss_pred EEEecCC-ceEEeeecCCceEEEe
Q 022111 273 LAVADAN-NVTLWKEAVDGEWQQV 295 (302)
Q Consensus 273 la~~~~d-~i~~w~~~~~~~~~~~ 295 (302)
|++.+.| .++||....++..+++
T Consensus 320 iLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 320 ILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred EeecCCcceeeeeeecCCceEEEE
Confidence 9999999 6999999988887765
No 93
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.3e-25 Score=187.28 Aligned_cols=220 Identities=22% Similarity=0.272 Sum_probs=163.3
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
.++..||..+|.-+.||||.++|++|+.|..+++||..++.. ...+ .+|...+.+++|.|+ |..+++|+.|+++.
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDRTII 337 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEccC--CceeEecCCCCcEE
Confidence 456779999999999999999999999999999999976432 2222 235678899999875 88999999999999
Q ss_pred EEEcCCCCceeEEEEecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
.||+..+ ......+- ...|.+++..+| |+.+++...|..|++|+.+..-... +. .-..++++...+-++
T Consensus 338 ~wdlDgn----~~~~W~gvr~~~v~dlait~D--gk~vl~v~~d~~i~l~~~e~~~dr~---li-se~~~its~~iS~d~ 407 (519)
T KOG0293|consen 338 MWDLDGN----ILGNWEGVRDPKVHDLAITYD--GKYVLLVTVDKKIRLYNREARVDRG---LI-SEEQPITSFSISKDG 407 (519)
T ss_pred EecCCcc----hhhcccccccceeEEEEEcCC--CcEEEEEecccceeeechhhhhhhc---cc-cccCceeEEEEcCCC
Confidence 9998653 22233332 357899999998 7789989999999999876422111 10 112345555544432
Q ss_pred CCC---------ceeec---------------------cc-CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111 162 APG---------ALVGL---------------------GL-LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 162 ~~~---------~~~~~---------------------~~-~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
... .++.+ .+ ..+..+++|||+|+.|+||+..++ ..+.++.||..
T Consensus 408 k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg----kll~~LsGHs~ 483 (519)
T KOG0293|consen 408 KLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG----KLLAVLSGHSK 483 (519)
T ss_pred cEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC----ceeEeecCCcc
Confidence 100 00000 00 123578999999999999999887 46778999999
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.|+||+|+|.. +.++||+|+||+||||-...
T Consensus 484 ~vNcVswNP~~---p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 484 TVNCVSWNPAD---PEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eeeEEecCCCC---HHHhhccCCCCeEEEecCCc
Confidence 99999999974 68999999999999997653
No 94
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=192.10 Aligned_cols=200 Identities=20% Similarity=0.239 Sum_probs=155.9
Q ss_pred cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111 56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA 135 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~ 135 (302)
+.+.+.+|.|. ++++++|...|.+.++|+.+.. .+.++..|.+.|.+++.+|| +..+++||.|++|++||..-
T Consensus 413 ~y~l~~~Fvpg--d~~Iv~G~k~Gel~vfdlaS~~---l~Eti~AHdgaIWsi~~~pD--~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 413 GYILASKFVPG--DRYIVLGTKNGELQVFDLASAS---LVETIRAHDGAIWSISLSPD--NKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred ccEEEEEecCC--CceEEEeccCCceEEEEeehhh---hhhhhhccccceeeeeecCC--CCceEEecCCcEEEEEeEEE
Confidence 45667788753 6889999999999999997653 56677789999999999999 55799999999999998742
Q ss_pred CCC---eeeeeecc------cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc
Q 022111 136 DGG---WDTTRIDQ------AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ 206 (302)
Q Consensus 136 ~~~---~~~~~~~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~ 206 (302)
... .+...+.. .-+..|.++++||++ ++||.+--|++|+||-+.+- +.+-.+.
T Consensus 486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg--------------k~LaVsLLdnTVkVyflDtl----KFflsLY 547 (888)
T KOG0306|consen 486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG--------------KLLAVSLLDNTVKVYFLDTL----KFFLSLY 547 (888)
T ss_pred EeccCcccceeeeeccceEEeccccEEEEEEcCCC--------------cEEEEEeccCeEEEEEecce----eeeeeec
Confidence 100 00000111 124568888888864 89999999999999999864 4556789
Q ss_pred cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
||+=+|.|+..+||. +.++|||.|++|+||-++-.. . ......|.+.|.++.|-|....+-+++.| .++.||
T Consensus 548 GHkLPV~smDIS~DS----klivTgSADKnVKiWGLdFGD--C-HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDS----KLIVTGSADKNVKIWGLDFGD--C-HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred ccccceeEEeccCCc----CeEEeccCCCceEEeccccch--h-hhhhhcccCceeEEEEcccceeEEEecCcceEEeec
Confidence 999999999999996 789999999999999775421 1 12335677889999999988777777788 799997
Q ss_pred ec
Q 022111 286 EA 287 (302)
Q Consensus 286 ~~ 287 (302)
..
T Consensus 621 g~ 622 (888)
T KOG0306|consen 621 GE 622 (888)
T ss_pred hh
Confidence 53
No 95
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=196.52 Aligned_cols=207 Identities=18% Similarity=0.271 Sum_probs=158.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
..+.||.+.|.+|+||.++ +|+|++.|+|||||.+.. ..++..| .|.+.|+||+|.| .+.++++|||-|+.||||
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~--~~CL~~F-~HndfVTcVaFnP-vDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR--KECLKVF-SHNDFVTCVAFNP-VDDRYFISGSLDGKVRLW 437 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCC--cceeeEE-ecCCeeEEEEecc-cCCCcEeecccccceEEe
Confidence 3467999999999999855 899999999999999875 3567766 5999999999976 468999999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec------ccCCCCeEEEEeC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID------QAHPVGVTSVSWA 158 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~ 158 (302)
++.+. .+.-...-.+.|++++|.|| |+..+.|+.+|.+++|+...........+. ..|. .|+.+.+.
T Consensus 438 sI~d~----~Vv~W~Dl~~lITAvcy~Pd--Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~ 510 (712)
T KOG0283|consen 438 SISDK----KVVDWNDLRDLITAVCYSPD--GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFF 510 (712)
T ss_pred ecCcC----eeEeehhhhhhheeEEeccC--CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEec
Confidence 99764 33344455689999999999 889999999999999987532111111111 1233 79999998
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC--ceeEEEeeCCCCCCccEEEEEecCCe
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIASASQDGT 236 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~s~D~~ 236 (302)
|.. ...++..+.|..|||+|+++. ..+..|+|+.. .-...+|+.|+ ++|+++++|..
T Consensus 511 p~~-------------~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~Dg----k~IVs~seDs~ 569 (712)
T KOG0283|consen 511 PGD-------------PDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSDG----KHIVSASEDSW 569 (712)
T ss_pred CCC-------------CCeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccCC----CEEEEeecCce
Confidence 853 235666778999999999654 23445555432 23456888875 88999999999
Q ss_pred EEEEEecc
Q 022111 237 VVIWTCAK 244 (302)
Q Consensus 237 i~iwd~~~ 244 (302)
|.||+...
T Consensus 570 VYiW~~~~ 577 (712)
T KOG0283|consen 570 VYIWKNDS 577 (712)
T ss_pred EEEEeCCC
Confidence 99999743
No 96
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.8e-25 Score=176.88 Aligned_cols=249 Identities=22% Similarity=0.326 Sum_probs=196.8
Q ss_pred ccccccccceeEEEEcc---CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 5 KIETGHEDTVHDVAMDF---YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
++-.||+.+|..++||| +|-+|.|++.|+.--|=+- .++.-+.+|.||++.|++.+... +..+-|+++.|-+.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g--~tgdwigtfeghkgavw~~~l~~--na~~aasaaadfta 83 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG--DTGDWIGTFEGHKGAVWSATLNK--NATRAASAAADFTA 83 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC--CCCCcEEeeeccCcceeeeecCc--hhhhhhhhcccchh
Confidence 34569999999999985 7899999999998766433 33556899999999999998753 36788999999999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
++||.-++. .++.|. |+.-|.+++|+.| ..+|++|+.++.+++||+.... -.+.++. +|+..|..+.|....
T Consensus 84 kvw~a~tgd---elhsf~-hkhivk~~af~~d--s~~lltgg~ekllrvfdln~p~-App~E~~-ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 84 KVWDAVTGD---ELHSFE-HKHIVKAVAFSQD--SNYLLTGGQEKLLRVFDLNRPK-APPKEIS-GHTGGIRTVLWCHED 155 (334)
T ss_pred hhhhhhhhh---hhhhhh-hhheeeeEEeccc--chhhhccchHHHhhhhhccCCC-CCchhhc-CCCCcceeEEEeccC
Confidence 999976653 455665 9999999999988 4589999999999999987532 2334444 899999999998643
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
+.|+|++.|++||+||.+++. ..+++. -..+|+++-.++++ .+++.+..+.|++||
T Consensus 156 --------------~~iLSSadd~tVRLWD~rTgt----~v~sL~-~~s~VtSlEvs~dG-----~ilTia~gssV~Fwd 211 (334)
T KOG0278|consen 156 --------------KCILSSADDKTVRLWDHRTGT----EVQSLE-FNSPVTSLEVSQDG-----RILTIAYGSSVKFWD 211 (334)
T ss_pred --------------ceEEeeccCCceEEEEeccCc----EEEEEe-cCCCCcceeeccCC-----CEEEEecCceeEEec
Confidence 688999999999999999873 223322 35669999999985 477888999999999
Q ss_pred eccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEe
Q 022111 242 CAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV 295 (302)
Q Consensus 242 ~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~ 295 (302)
...-+ +++. ....|.+.+++|+..++++|+.| .++.||.......+..
T Consensus 212 aksf~------~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 212 AKSFG------LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ccccc------ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 87532 2333 34568899999999999999988 7999998776665553
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.3e-25 Score=198.85 Aligned_cols=235 Identities=22% Similarity=0.349 Sum_probs=178.5
Q ss_pred EEEEc-cCCCEEEEeeCCCcEEEEeecCC-CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111 16 DVAMD-FYGKRLATASSDSSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT 93 (302)
Q Consensus 16 ~~~~s-~~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 93 (302)
++.|. .+.++||+++..|.|.+||+... ..+.+..|..|+..|.++.|++ ..+.+|+|||.||+|++||++...
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~-tep~iliSGSQDg~vK~~DlR~~~--- 167 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS-TEPNILISGSQDGTVKCWDLRSKK--- 167 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc-CCccEEEecCCCceEEEEeeeccc---
Confidence 34454 34689999999999999999642 1234567889999999999975 458899999999999999998753
Q ss_pred EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111 94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD 173 (302)
Q Consensus 94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 173 (302)
...++.+..+.|+.+.|+|-. +..++++.+.|.+++||++....+. ..+ .+|..+|.++.|+|+.
T Consensus 168 S~~t~~~nSESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~-~k~-~AH~GpV~c~nwhPnr------------ 232 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPDRCE-KKL-TAHNGPVLCLNWHPNR------------ 232 (839)
T ss_pred ccccccccchhhhceeeccCC-CceEEEecCCceEEEeeccCchhHH-HHh-hcccCceEEEeecCCC------------
Confidence 455677788999999999975 6789999999999999998543322 233 3899999999999953
Q ss_pred CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec--CCeEEEEEeccCCcceee
Q 022111 174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ--DGTVVIWTCAKEGEQWEG 251 (302)
Q Consensus 174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~ 251 (302)
.+|||||.|++|+|||+.++.... ..+ ..-..+|.+|.|-|+. ..+||+++. |..|+|||++...-+ .
T Consensus 233 --~~lATGGRDK~vkiWd~t~~~~~~--~~t-InTiapv~rVkWRP~~---~~hLAtcsmv~dtsV~VWDvrRPYIP--~ 302 (839)
T KOG0269|consen 233 --EWLATGGRDKMVKIWDMTDSRAKP--KHT-INTIAPVGRVKWRPAR---SYHLATCSMVVDTSVHVWDVRRPYIP--Y 302 (839)
T ss_pred --ceeeecCCCccEEEEeccCCCccc--eeE-EeecceeeeeeeccCc---cchhhhhhccccceEEEEeecccccc--c
Confidence 799999999999999998653211 111 1124679999999985 478999885 889999999865433 2
Q ss_pred eeeccCCCcEEEEEEcc-CCCEEEEecCC
Q 022111 252 RVLKDFKTPVWSVSWSL-TGNLLAVADAN 279 (302)
Q Consensus 252 ~~~~~~~~~v~~~~~sp-dg~~la~~~~d 279 (302)
.+..+|...+..++|-. |-..|.+++.|
T Consensus 303 ~t~~eH~~~vt~i~W~~~d~~~l~s~sKD 331 (839)
T KOG0269|consen 303 ATFLEHTDSVTGIAWDSGDRINLWSCSKD 331 (839)
T ss_pred eeeeccCccccceeccCCCceeeEeecCc
Confidence 34467778888899943 22334444444
No 98
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.3e-24 Score=182.67 Aligned_cols=236 Identities=21% Similarity=0.322 Sum_probs=178.1
Q ss_pred CCEEEEeeCCCcEEEEeecCCC-ceEEEE------------------ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 23 GKRLATASSDSSIKIIGLSNSA-SQHLAT------------------LKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~-~~~~~~------------------~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
|+++|.|..|..|.|||+.--. ..+..+ ..+|+..|.+++|+.. .-++|||||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCceEEE
Confidence 5799999999999999984110 111111 2379999999998654 3579999999999999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
||+.+++ +..++..|.++|.++.|+|.. ...|++|+.|++|.++|.+..+... ... .....|..+.|.|..
T Consensus 271 WD~~~g~---p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~-~~w--k~~g~VEkv~w~~~s-- 341 (463)
T KOG0270|consen 271 WDVDTGK---PKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSG-KEW--KFDGEVEKVAWDPHS-- 341 (463)
T ss_pred EEcCCCC---cceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccC-ceE--EeccceEEEEecCCC--
Confidence 9998874 667788899999999999985 5789999999999999998422111 011 123568899999864
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
...++.+..||+|+-+|+|... +++.++..|.+.|.+|++++.. +.+++++|.|+.+++|++.
T Consensus 342 -----------e~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~---p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 342 -----------ENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQT---PGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred -----------ceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCC---CcceeeccccceEEEEeec
Confidence 2467788899999999999764 5567788999999999999875 6889999999999999987
Q ss_pred cCCcceeeeeeccCC---CcEEEEEEccCCC-EEEEecCC-ceEEeeecCC
Q 022111 244 KEGEQWEGRVLKDFK---TPVWSVSWSLTGN-LLAVADAN-NVTLWKEAVD 289 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~---~~v~~~~~spdg~-~la~~~~d-~i~~w~~~~~ 289 (302)
.... .....+. +...+.++.|+-. .||.|+.+ .+++|+...+
T Consensus 405 ~~~~----~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 405 VDSP----KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CCCC----cccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 5322 1112221 2356777888654 55677777 4999997543
No 99
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-22 Score=158.63 Aligned_cols=247 Identities=19% Similarity=0.304 Sum_probs=176.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeec---------CCC-ce---EEEEecCcccCeEEEEeeCCCCCCEEEEEeC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLS---------NSA-SQ---HLATLKGHRGPVWQVAWAHPKFGSILASCSY 77 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~---------~~~-~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~ 77 (302)
+.+|.+++|+|.|...|.|+..+++||.... +.. .+ ..+.-+-|.+.|++.+|++. |.+||+|+.
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn 109 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN 109 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence 4578899999999999999999999987541 000 11 12233568999999999874 899999999
Q ss_pred CCeEEEEEcCCC--CceeEEEEecCCCCCeeEEEecCC--CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111 78 DGQVIIWKEGNQ--NDWTQAHTFNDHKSSVNSIAWAPH--ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT 153 (302)
Q Consensus 78 D~~i~iwd~~~~--~~~~~~~~~~~h~~~i~~l~~~pd--~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~ 153 (302)
|++|++..++.. +.....-.|..|.+.|+.++|-.+ ..+.+|++++ .|-++||-...+.......+ .+|+.-|.
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g-agdc~iy~tdc~~g~~~~a~-sghtghil 187 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG-AGDCKIYITDCGRGQGFHAL-SGHTGHIL 187 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC-CCcceEEEeecCCCCcceee-cCCcccEE
Confidence 999999876432 111122357789999999999644 3345566554 44555554433222222333 37777776
Q ss_pred EE-EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc----cc---CCCceeEEEeeCCCCCCc
Q 022111 154 SV-SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL----QM---HSDWVRSVAWAPNLGLPK 225 (302)
Q Consensus 154 ~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~----~~---h~~~v~~v~~~p~~~~~~ 225 (302)
++ .|+ +..+++|+.|.+||+||++-+ .++.++ .+ ..+.|.+++..|.+
T Consensus 188 alyswn----------------~~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vdpsg---- 243 (350)
T KOG0641|consen 188 ALYSWN----------------GAMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVDPSG---- 243 (350)
T ss_pred EEEEec----------------CcEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEECCCc----
Confidence 64 454 467999999999999999854 233322 11 23679999999985
Q ss_pred cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+.|++|-.|..+.+||++...- ......|...|.++.|||...++.+++=| +|++-|...
T Consensus 244 rll~sg~~dssc~lydirg~r~---iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRM---IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred ceeeeccCCCceEEEEeeCCce---eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 8899999999999999986421 12235677889999999999999999888 899988754
No 100
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=176.11 Aligned_cols=247 Identities=21% Similarity=0.317 Sum_probs=189.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+++.||...|+.+.|+++...+++++.|..|++|...... .......|+.+|+.+...+. |.||++++.|++..+.
T Consensus 255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTWAFS 330 (506)
T ss_pred hhccCcceEEEEEEeccchhheeecCCcceEEeecccccc--CccccccccccceeeeeccC--CcEEEEecCCceEEEE
Confidence 3577999999999999999999999999999999874432 33456789999999998543 8999999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|++++...... .-....-.+++.+|+|| |.++++|..|+.+++||+.... ....+. +|+.+|+.++|+.+
T Consensus 331 d~~~g~~lt~v-s~~~s~v~~ts~~fHpD--gLifgtgt~d~~vkiwdlks~~--~~a~Fp-ght~~vk~i~FsEN---- 400 (506)
T KOG0289|consen 331 DISSGSQLTVV-SDETSDVEYTSAAFHPD--GLIFGTGTPDGVVKIWDLKSQT--NVAKFP-GHTGPVKAISFSEN---- 400 (506)
T ss_pred EccCCcEEEEE-eeccccceeEEeeEcCC--ceEEeccCCCceEEEEEcCCcc--ccccCC-CCCCceeEEEeccC----
Confidence 99877532211 11112235899999999 8899999999999999997654 334555 79999999999864
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
|.+||+++.|+.|++||++.-. .+.++.. ....|.+++|.+.| .+|+.++.| ++|+-+.
T Consensus 401 ----------GY~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~SG----t~L~~~g~~--l~Vy~~~ 460 (506)
T KOG0289|consen 401 ----------GYWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQSG----TYLGIAGSD--LQVYICK 460 (506)
T ss_pred ----------ceEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCCC----CeEEeecce--eEEEEEe
Confidence 5899999999999999998642 2233321 23368999998875 778888777 5555554
Q ss_pred cCCcceeee-eeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 244 KEGEQWEGR-VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 244 ~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
.....|... .+..+.+....+.|.....++++++.| .++++.
T Consensus 461 k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred cccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 444456432 234566678899999999999999988 577664
No 101
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.6e-24 Score=181.80 Aligned_cols=241 Identities=17% Similarity=0.234 Sum_probs=183.7
Q ss_pred ccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 11 EDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 11 ~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
.+.|.+++|+|.- .-+|+++ ...|.||+... .....++.--...|++++|.. +|++||.|...|.|+++|+.+.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~--~~~~k~~srFk~~v~s~~fR~--DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT--RSVRKTFSRFKDVVYSVDFRS--DGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred cCcceeEecCCCCCCceEEec-ccEEEEEecch--hhhhhhHHhhccceeEEEeec--CCeEEEccCCcCcEEEeccccH
Confidence 4589999999853 3344333 45688988643 233444555567899999975 5999999999999999996542
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
..+..+..|+.+|..+.|+|+. ++.+++|++|+.+++||+.+.. . ...+ .+|+..|.+.+|+|..
T Consensus 101 ---~iLR~~~ah~apv~~~~f~~~d-~t~l~s~sDd~v~k~~d~s~a~-v-~~~l-~~htDYVR~g~~~~~~-------- 165 (487)
T KOG0310|consen 101 ---VILRQLYAHQAPVHVTKFSPQD-NTMLVSGSDDKVVKYWDLSTAY-V-QAEL-SGHTDYVRCGDISPAN-------- 165 (487)
T ss_pred ---HHHHHHhhccCceeEEEecccC-CeEEEecCCCceEEEEEcCCcE-E-EEEe-cCCcceeEeeccccCC--------
Confidence 2455788899999999999985 6789999999999999997542 2 3344 4899999999999864
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
...++|||.|+.||+||.+... ..+.+ -.|..+|.++.|-|.+ ..||+++. ..+|+||+-.... .
T Consensus 166 -----~hivvtGsYDg~vrl~DtR~~~---~~v~e-lnhg~pVe~vl~lpsg----s~iasAgG-n~vkVWDl~~G~q-l 230 (487)
T KOG0310|consen 166 -----DHIVVTGSYDGKVRLWDTRSLT---SRVVE-LNHGCPVESVLALPSG----SLIASAGG-NSVKVWDLTTGGQ-L 230 (487)
T ss_pred -----CeEEEecCCCceEEEEEeccCC---ceeEE-ecCCCceeeEEEcCCC----CEEEEcCC-CeEEEEEecCCce-e
Confidence 3689999999999999998752 11222 2489999999999875 56777654 5699999975432 1
Q ss_pred eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
... ...|...|+++++..++..|++|+-| .+++|+..
T Consensus 231 l~~-~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 231 LTS-MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred hhh-hhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 112 23477789999999999999999999 79999954
No 102
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.2e-24 Score=193.62 Aligned_cols=256 Identities=19% Similarity=0.346 Sum_probs=185.0
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCc---ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGH---RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
...|+..++...++.+|.. .++||.+.... .++...++.- .-.+..|.|. ....++||||+..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-QLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccc-cchhhhheeecCCCcEEEEecCc
Confidence 4455666777777777644 56777764322 1111111111 1123457776 34578999999999999999976
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
..+-..+..|..|+-.+.+++|++.. ..+|++|+.|+.|++||++......... +....|+.+.|+|..
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~---~nSESiRDV~fsp~~------- 188 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFR---SNSESIRDVKFSPGY------- 188 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeeccccccccc---ccchhhhceeeccCC-------
Confidence 33334566788999999999999875 4689999999999999998654332221 456779999999964
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
+..|+++...|++++||++... .+...+.+|.++|.|+.|+|+. .+||||+-|+.|+|||+......
T Consensus 189 ------~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr----~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 189 ------GNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNR----EWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred ------CceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCC----ceeeecCCCccEEEEeccCCCcc
Confidence 4689999999999999999764 4556788999999999999984 78999999999999999754322
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEE-EEecC--C-ceEEeeecCCceEEEeeecC
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLL-AVADA--N-NVTLWKEAVDGEWQQVSVVE 299 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~--d-~i~~w~~~~~~~~~~~~~~~ 299 (302)
. ...-.-..+|..|+|-|+..+. |+.+. | .|++||+. +++.|..+++
T Consensus 256 ~--~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr--RPYIP~~t~~ 306 (839)
T KOG0269|consen 256 P--KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR--RPYIPYATFL 306 (839)
T ss_pred c--eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec--cccccceeee
Confidence 1 1112334689999999987544 44433 4 79999975 4676666554
No 103
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=2.1e-23 Score=173.04 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=162.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
..+|++.|+++.|+.+|.+||||+.+|.|+||+.+.+..+ ..+..--..+.-++|.| .+.+|+.|+.||.+-+|.+
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~--~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ--WKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE--EEeecccCceEEEEecc--cccEEEeecCCCcEEEEEC
Confidence 5699999999999999999999999999999998765432 33433334566788965 3899999999999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----------------------
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR----------------------- 143 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~----------------------- 143 (302)
.+. ...+.+.+|+.++++=.|.|| |++++++..|++|++|+..+..+.....
T Consensus 178 p~~---~~~kv~~Gh~~~ct~G~f~pd--GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~ 252 (399)
T KOG0296|consen 178 PSQ---ALCKVMSGHNSPCTCGEFIPD--GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN 252 (399)
T ss_pred CCc---ceeeEecCCCCCcccccccCC--CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence 764 367789999999999999998 8899999999999999875432211000
Q ss_pred -------------------------ecccCCCCeEEEEeCCCCCCCceeeccc---------------------------
Q 022111 144 -------------------------IDQAHPVGVTSVSWAPAMAPGALVGLGL--------------------------- 171 (302)
Q Consensus 144 -------------------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~--------------------------- 171 (302)
+...+...+.++.+.|....-.+.+++.
T Consensus 253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence 0001111122222222111111111100
Q ss_pred --CCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 172 --LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 172 --~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
..+..+|++++.+|.|++||.++++ ++.++.||...|.+++++|+. +.++|+|.|++.+||++.
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~~~Il~f~ls~~~----~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTGQ----LKFTYTGHQMGILDFALSPQK----RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCcchheeeccCceEEeeeccccc----eEEEEecCchheeEEEEcCCC----cEEEEecCCCeEEEEecC
Confidence 0124679999999999999999984 556789999999999999995 889999999999999863
No 104
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.4e-23 Score=170.08 Aligned_cols=254 Identities=22% Similarity=0.302 Sum_probs=170.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc---eEEE--EecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS---QHLA--TLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~---~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
+.||.+.|++++|+.||++||+++.|++||||++..-.. .++. .-.+|. +.+.|.|+ -..+++++-...++
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~FapD-c~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVVFAPD-CKSVVVSVKRGNKL 157 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc---eEEEECCC-cceEEEEEccCCEE
Confidence 569999999999999999999999999999999843111 1111 112343 56789765 34578888888899
Q ss_pred EEEEcCCCCceeE----EE----Ee-cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCe
Q 022111 82 IIWKEGNQNDWTQ----AH----TF-NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGV 152 (302)
Q Consensus 82 ~iwd~~~~~~~~~----~~----~~-~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v 152 (302)
++|.+........ ++ .| .-|.-.|-.+... .++.+|++++.|..|.||++. +. .+..+. ......
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq--~L~~id-tnq~~n 231 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQ--LLQSID-TNQSSN 231 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cc--eeeeec-cccccc
Confidence 9998743211000 00 01 1133344444333 347899999999999999986 21 111221 111223
Q ss_pred EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe---cC-ccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111 153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY---NG-IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~---~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 228 (302)
...+.+|+ |+++++++...-|++|.+- .+ .+.......+.||.+.|..++|+|+. ..+
T Consensus 232 ~~aavSP~--------------GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S----~r~ 293 (420)
T KOG2096|consen 232 YDAAVSPD--------------GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS----TRA 293 (420)
T ss_pred cceeeCCC--------------CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc----cee
Confidence 34445554 6899999999999999973 22 12233345688999999999999985 789
Q ss_pred EEEecCCeEEEEEeccCCcc-eeeeeeccC-------CCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111 229 ASASQDGTVVIWTCAKEGEQ-WEGRVLKDF-------KTPVWSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 229 ~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~-------~~~v~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
+|.|.||++||||.+-+... ....+++.+ .+.-..+++||.|+.||++....++++....
T Consensus 294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~ 361 (420)
T KOG2096|consen 294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED 361 (420)
T ss_pred EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc
Confidence 99999999999998653211 011222222 2233379999999999999877899987654
No 105
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=2.6e-23 Score=184.78 Aligned_cols=269 Identities=23% Similarity=0.354 Sum_probs=195.9
Q ss_pred ccccccceeEEEEccCCC---EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEE
Q 022111 7 ETGHEDTVHDVAMDFYGK---RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVI 82 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~---~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~ 82 (302)
..||..+|+++.+-|+.+ +|+||+.|+.|++|.+.......+.++.+|...+.++. . ...+.++ +.|+++.
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~--a---~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVV--A---RSSVMTCKAADGTVS 124 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEE--e---eeeEEEeeccCceEE
Confidence 569999999999998877 89999999999999998555667888988877665553 2 2233444 7899999
Q ss_pred EEEcCCCCceeEEEEecCCCCC--eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSS--VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~--i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~ 159 (302)
+||.+..+ ..+.+.+..-... ..|+++.|+..-..+|.|+.+..|.+|....+ .+.. ..+ .+|...|.+++|..
T Consensus 125 vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-~f~~v~el-~GH~DWIrsl~f~~ 201 (764)
T KOG1063|consen 125 VWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-SFARVAEL-EGHTDWIRSLAFAR 201 (764)
T ss_pred EeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-ceeEEEEe-eccchhhhhhhhhc
Confidence 99984332 1233333322222 34666677544457888888889999866533 3332 344 49999999999976
Q ss_pred CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------cccccc----------cccccCCCce
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------WKMDCF----------PALQMHSDWV 212 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------~~~~~~----------~~~~~h~~~v 212 (302)
.+. +..+|||+|+|.+||||.+.-.. ..+.+. ..+.||++||
T Consensus 202 ~~~-----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV 270 (764)
T KOG1063|consen 202 LGG-----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWV 270 (764)
T ss_pred cCC-----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccce
Confidence 542 23689999999999999985321 001111 1245999999
Q ss_pred eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec----cCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK----DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
+++.|+|.+ ..|+|+|.|+++.+|...++...|...+.. +.....|+.-|+|+++.+++-+.- +.++|+..
T Consensus 271 ~sv~W~p~~----~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~ 346 (764)
T KOG1063|consen 271 YSVWWHPEG----LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTK 346 (764)
T ss_pred EEEEEccch----hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEecc
Confidence 999999985 679999999999999988776667544322 223458999999999888776665 79999987
Q ss_pred CCceEEEeeec
Q 022111 288 VDGEWQQVSVV 298 (302)
Q Consensus 288 ~~~~~~~~~~~ 298 (302)
+.+.|.+.+++
T Consensus 347 d~~~w~~~~~i 357 (764)
T KOG1063|consen 347 DKTFWTQEPVI 357 (764)
T ss_pred Cccceeecccc
Confidence 78889887765
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.5e-23 Score=178.82 Aligned_cols=229 Identities=19% Similarity=0.237 Sum_probs=177.1
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC--
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN-- 88 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~-- 88 (302)
.++|.++.-+|+|.+|+.|+..+.+++|.++++ ..+..+.+|-..|+++.|+. +|.+++|||.||.|++|.+.+
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~--dgs~iiTgskDg~V~vW~l~~lv 156 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSD--DGSHIITGSKDGAVLVWLLTDLV 156 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeC--CCcEEEecCCCccEEEEEEEeec
Confidence 457899999999999998889999999999764 45667789999999999985 489999999999999998621
Q ss_pred ----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 89 ----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 89 ----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
.....+.+.|..|.-+|+++...+-....+|+|+|.|.++++||+..+.- . ..+ ..+..+.++..+|..
T Consensus 157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L-L-lti--~fp~si~av~lDpae--- 229 (476)
T KOG0646|consen 157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL-L-LTI--TFPSSIKAVALDPAE--- 229 (476)
T ss_pred ccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee-e-EEE--ecCCcceeEEEcccc---
Confidence 11235778899999999999887653345899999999999999975422 1 121 235667888887764
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCc------------cccccccccccCCC--ceeEEEeeCCCCCCccEEEE
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI------------WKMDCFPALQMHSD--WVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s 230 (302)
..+..|+.+|.|.+.++.... ...+.+..+.||.+ .|+|++.+-|+ +.|++
T Consensus 230 -----------~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg----tlLlS 294 (476)
T KOG0646|consen 230 -----------RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG----TLLLS 294 (476)
T ss_pred -----------cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc----cEEEe
Confidence 789999999999998875321 01123456789988 99999999885 88999
Q ss_pred EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
|+.||.++|||+.+..- -+.+....++|..+.+.|
T Consensus 295 Gd~dg~VcvWdi~S~Q~---iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQC---IRTLQTSKGPVTNLQINP 329 (476)
T ss_pred eCCCCCEEEEecchHHH---HHHHhhhccccceeEeec
Confidence 99999999999976421 122233567788887755
No 107
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-23 Score=182.39 Aligned_cols=232 Identities=27% Similarity=0.407 Sum_probs=178.7
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH 96 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 96 (302)
+.|+. ...||. +.+..|++|+-..+....+..+ +...|+++.|+++ |.+||.|..+|.+.|||..+.+ .+.
T Consensus 183 ldWss-~n~laV-alg~~vylW~~~s~~v~~l~~~--~~~~vtSv~ws~~--G~~LavG~~~g~v~iwD~~~~k---~~~ 253 (484)
T KOG0305|consen 183 LDWSS-ANVLAV-ALGQSVYLWSASSGSVTELCSF--GEELVTSVKWSPD--GSHLAVGTSDGTVQIWDVKEQK---KTR 253 (484)
T ss_pred hhccc-CCeEEE-EecceEEEEecCCCceEEeEec--CCCceEEEEECCC--CCEEEEeecCCeEEEEehhhcc---ccc
Confidence 44553 335554 4577899999766543444444 3788999999864 8999999999999999987653 445
Q ss_pred EecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111 97 TFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175 (302)
Q Consensus 97 ~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
++.+ |...|.+++|+. ..+.+|+.|+.|..+|++..... ....++|...|..++|++++
T Consensus 254 ~~~~~h~~rvg~laW~~----~~lssGsr~~~I~~~dvR~~~~~--~~~~~~H~qeVCgLkws~d~-------------- 313 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWNS----SVLSSGSRDGKILNHDVRISQHV--VSTLQGHRQEVCGLKWSPDG-------------- 313 (484)
T ss_pred cccCCcCceeEEEeccC----ceEEEecCCCcEEEEEEecchhh--hhhhhcccceeeeeEECCCC--------------
Confidence 6667 999999999983 37999999999999999854322 12235899999999999974
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe--cCCeEEEEEeccCCcceeeee
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS--QDGTVVIWTCAKEGEQWEGRV 253 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~ 253 (302)
.+||||+.|+.+.|||.... .....+..|...|..++|+|-. ...||+|+ .|++|++||...... .-
T Consensus 314 ~~lASGgnDN~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q---~~lLAsGGGs~D~~i~fwn~~~g~~----i~ 382 (484)
T KOG0305|consen 314 NQLASGGNDNVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQ---SGLLATGGGSADRCIKFWNTNTGAR----ID 382 (484)
T ss_pred CeeccCCCccceEeccCCCc----cccEEEeccceeeeEeeeCCCc---cCceEEcCCCcccEEEEEEcCCCcE----ec
Confidence 89999999999999999544 3345678999999999999953 46788875 699999999875321 11
Q ss_pred eccCCCcEEEEEEccCCCEEEEecC---CceEEeeecC
Q 022111 254 LKDFKTPVWSVSWSLTGNLLAVADA---NNVTLWKEAV 288 (302)
Q Consensus 254 ~~~~~~~v~~~~~spdg~~la~~~~---d~i~~w~~~~ 288 (302)
..+-...|.+|.|++..+.|+++.+ +.|+||+...
T Consensus 383 ~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 383 SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS 420 (484)
T ss_pred ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc
Confidence 1344678999999999988877744 3699999854
No 108
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=184.67 Aligned_cols=248 Identities=19% Similarity=0.262 Sum_probs=184.5
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
.+|+...+.++|.++|++|.+++.|+.|++|+....... ..++..|...|.+++-. +++|++|+.+++|.+|.+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~-P~ti~~~g~~v~~ia~~----s~~f~~~s~~~tv~~y~fp 84 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE-PETIDISGELVSSIACY----SNHFLTGSEQNTVLRYKFP 84 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC-CchhhccCceeEEEeec----ccceEEeeccceEEEeeCC
Confidence 489999999999999999999999999999986433111 12333377778877642 5689999999999999987
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
++.....+. ..+.++++++|+-+ |.++|.||+|-.|++-++.+.+.. ..++ +|..+|.++.|+|.+
T Consensus 85 s~~~~~iL~---Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~s~~--~~lr-gh~apVl~l~~~p~~------ 150 (933)
T KOG1274|consen 85 SGEEDTILA---RFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDSSQE--KVLR-GHDAPVLQLSYDPKG------ 150 (933)
T ss_pred CCCccceee---eeeccceEEEEecC--CcEEEeecCceeEEEEeccccchh--eeec-ccCCceeeeeEcCCC------
Confidence 654322333 34578999999876 789999999999999877644322 2333 899999999999864
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccc--c-ccccccC-CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD--C-FPALQMH-SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~--~-~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
.+||+.+.||.|++||+.++..... - ......- ...+..++|+|++ .+++..+.|+.|++++..
T Consensus 151 --------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~----g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 151 --------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG----GTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred --------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC----CeEEeeccCCeEEEEccC
Confidence 7999999999999999987632111 0 0111111 3445679999995 678999999999999875
Q ss_pred cCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 244 KEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 244 ~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.-... ..+. ..+...+..++|||+|+|||+++-| .|.||+...
T Consensus 219 ~we~~--f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 219 GWELQ--FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred Cceeh--eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 42111 1222 2334458899999999999999988 699999864
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=2.6e-23 Score=179.26 Aligned_cols=247 Identities=19% Similarity=0.310 Sum_probs=177.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-eE---------EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-QH---------LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-~~---------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
-.|.++.|++.|..|++.+-....+|+|...... ++ ....+||.+.+++.+|.|. .-..+.||+.|+++
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTL 293 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcE
Confidence 3588899999999888888889999999754221 11 1234799999999999765 35678899999999
Q ss_pred EEEEcCCCCceeEEEEec-----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC--CeEE
Q 022111 82 IIWKEGNQNDWTQAHTFN-----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV--GVTS 154 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~-----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~--~v~~ 154 (302)
||||+++... ..+.+. +..-+++.|+|+|| |..+|+|..||.|.+|+......-....+..+|.. .|++
T Consensus 294 RiWdv~~~k~--q~qVik~k~~~g~Rv~~tsC~~nrd--g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 294 RIWDVNNTKS--QLQVIKTKPAGGKRVPVTSCAWNRD--GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred EEEecCCchh--heeEEeeccCCCcccCceeeecCCC--cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence 9999976542 333332 23347789999998 77899999999999999753322222345567866 7999
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC--CCceeEEEeeCCCCCCccEEEEEe
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH--SDWVRSVAWAPNLGLPKSTIASAS 232 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~l~s~s 232 (302)
+.|+++ |++|+|-|.|+++++||++.... ++....+- ...-+.++|||+. ..|++|+
T Consensus 370 i~FS~d--------------g~~LlSRg~D~tLKvWDLrq~kk---pL~~~tgL~t~~~~tdc~FSPd~----kli~TGt 428 (641)
T KOG0772|consen 370 ISFSYD--------------GNYLLSRGFDDTLKVWDLRQFKK---PLNVRTGLPTPFPGTDCCFSPDD----KLILTGT 428 (641)
T ss_pred EEeccc--------------cchhhhccCCCceeeeecccccc---chhhhcCCCccCCCCccccCCCc----eEEEecc
Confidence 999986 48999999999999999987542 23333321 2234678999985 6788874
Q ss_pred ------cCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEEEecCC-ceEE-eeecC
Q 022111 233 ------QDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVADAN-NVTL-WKEAV 288 (302)
Q Consensus 233 ------~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d-~i~~-w~~~~ 288 (302)
..+++.+||..+-... ..+ ++ ...|-.+.|+|-=++|.+++.| ++++ ||.+.
T Consensus 429 S~~~~~~~g~L~f~d~~t~d~v--~ki--~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 429 SAPNGMTAGTLFFFDRMTLDTV--YKI--DISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred cccCCCCCceEEEEeccceeeE--EEe--cCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence 3457889987643211 111 22 3458889999988888888777 6666 55443
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=5e-23 Score=164.51 Aligned_cols=212 Identities=22% Similarity=0.336 Sum_probs=166.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-----CCCe
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-----YDGQ 80 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-----~D~~ 80 (302)
++.||+++|+++..+.+.++|++|+.|.+++|||+.. ++++.+++- ..+|..+.|+.. |++++.+. .-+.
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~la~~k~-~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQLATWKT-NSPVKRVDFSFG--GNLILASTDKQMGYTCF 121 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCC--CcEEEEeec-CCeeEEEeeccC--CcEEEEEehhhcCcceE
Confidence 4679999999999999999999999999999999976 456666653 457999999864 67765553 3567
Q ss_pred EEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111 81 VIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS 156 (302)
Q Consensus 81 i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 156 (302)
|.++|++... .-.+...+..+..+|+.+.|.|- +..|++|..||.|..||.+++. .+......|...|+.+.
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q 197 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQ 197 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCc--eeeechhhhcccccccc
Confidence 8999987432 12346667778899999999997 6799999999999999998643 22333346888999999
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------------------------c----------
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------------------------W---------- 197 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------------------------~---------- 197 (302)
++|+. .++++++.|.+-++||+.+-. .
T Consensus 198 ~s~d~--------------T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r 263 (327)
T KOG0643|consen 198 FSRDR--------------TYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTR 263 (327)
T ss_pred ccCCc--------------ceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeeccc
Confidence 99875 789999999999999975420 0
Q ss_pred --cc----------ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 198 --KM----------DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 198 --~~----------~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
++ +.+...+||=++|++|+|+|+| ...+||++||.||+--.+.
T Consensus 264 ~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG----ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 264 AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG----KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccchhhhHHHHHHHHHhccccccccCcceeEECCCC----cccccCCCCceEEEEEecc
Confidence 00 1123467999999999999996 6799999999999986654
No 111
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.2e-23 Score=166.02 Aligned_cols=214 Identities=21% Similarity=0.390 Sum_probs=160.7
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v 128 (302)
..+.+|.+.|.+|+|+.+ |..|++++.|+++++|.+... .........+|.+.|..++|.|.. ..++++++.|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~--g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~-~d~~atas~dk~i 89 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD--GTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKH-PDLFATASGDKTI 89 (313)
T ss_pred HHhhhhhhcceEEEEccc--CceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCC-CcceEEecCCceE
Confidence 345789999999999864 899999999999999998654 222234567899999999999875 3579999999999
Q ss_pred EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc------------
Q 022111 129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI------------ 196 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~------------ 196 (302)
++||.+...+...... ...-.-+.|+|++ ++++.++.|..|.+.|.++.+
T Consensus 90 r~wd~r~~k~~~~i~~----~~eni~i~wsp~g--------------~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n 151 (313)
T KOG1407|consen 90 RIWDIRSGKCTARIET----KGENINITWSPDG--------------EYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN 151 (313)
T ss_pred EEEEeccCcEEEEeec----cCcceEEEEcCCC--------------CEEEEecCcccEEEEEecccceeehhcccceee
Confidence 9999987654332221 2223456788864 566677777777777754321
Q ss_pred -------------------------cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee
Q 022111 197 -------------------------WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG 251 (302)
Q Consensus 197 -------------------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 251 (302)
..++.+.+++.|...-.||.|+|+| ++||+||.|..+.+||++.. ...
T Consensus 152 e~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G----ryfA~GsADAlvSLWD~~EL---iC~ 224 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG----RYFATGSADALVSLWDVDEL---ICE 224 (313)
T ss_pred eeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC----ceEeeccccceeeccChhHh---hhh
Confidence 0123456678899888999999996 88999999999999999752 122
Q ss_pred eeeccCCCcEEEEEEccCCCEEEEecCC-ce---------EEeeecCCce
Q 022111 252 RVLKDFKTPVWSVSWSLTGNLLAVADAN-NV---------TLWKEAVDGE 291 (302)
Q Consensus 252 ~~~~~~~~~v~~~~~spdg~~la~~~~d-~i---------~~w~~~~~~~ 291 (302)
+....+.=||..++||.||++||+|+.| .| ++|+++.+++
T Consensus 225 R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~ 274 (313)
T KOG1407|consen 225 RCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP 274 (313)
T ss_pred eeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC
Confidence 3445566789999999999999999998 45 6777765554
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.2e-24 Score=188.01 Aligned_cols=251 Identities=19% Similarity=0.326 Sum_probs=193.2
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
..++.|.+.|.++.+--+++.|.|+|.|.+|++|+......-+..++..|++.|.++++.. ++..++||||-|+.|.+|
T Consensus 67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~a-k~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIA-KNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecc-cCceeEEecCCCccEEEE
Confidence 3466899999999988899999999999999999986543345677889999999999843 346799999999999999
Q ss_pred EcCCCCc-------eeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111 85 KEGNQND-------WTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS 156 (302)
Q Consensus 85 d~~~~~~-------~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 156 (302)
|++.+.. ......+. ++...|.+++-++. |..+++|+..+-+++||-++.. ....+. +|+..|..+.
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivsGgtek~lr~wDprt~~--kimkLr-GHTdNVr~ll 220 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVSGGTEKDLRLWDPRTCK--KIMKLR-GHTDNVRVLL 220 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEecCcccceEEecccccc--ceeeee-ccccceEEEE
Confidence 9976521 11222334 78999999999876 7799999999999999987543 334555 9999999998
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~ 236 (302)
.+++ |++++|+|.|++|++||+... .|+.++..|++.|.++..+|+. .++-+|+.||.
T Consensus 221 ~~dD--------------Gt~~ls~sSDgtIrlWdLgqQ----rCl~T~~vH~e~VWaL~~~~sf----~~vYsG~rd~~ 278 (735)
T KOG0308|consen 221 VNDD--------------GTRLLSASSDGTIRLWDLGQQ----RCLATYIVHKEGVWALQSSPSF----THVYSGGRDGN 278 (735)
T ss_pred EcCC--------------CCeEeecCCCceEEeeecccc----ceeeeEEeccCceEEEeeCCCc----ceEEecCCCCc
Confidence 7765 589999999999999999754 6888999999999999999986 78999999999
Q ss_pred EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 237 VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 237 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
|..=|++... .. .++-....+|..+..+...+-+=++.-| .|+.|..
T Consensus 279 i~~Tdl~n~~-~~--tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 279 IYRTDLRNPA-KS--TLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKL 326 (735)
T ss_pred EEecccCCch-hh--eEeecCCCchhhhhhccccCCceeeeccccceecCC
Confidence 9998887531 11 1122223455555555333333333344 5777764
No 113
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.8e-23 Score=167.14 Aligned_cols=251 Identities=22% Similarity=0.273 Sum_probs=189.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEee------cC---------C----------------------C-ceE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGL------SN---------S----------------------A-SQH 47 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~------~~---------~----------------------~-~~~ 47 (302)
.+.||.+.|+++.|++.+.++++++-|++..||.. -. + . ..+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 47899999999999999999999999999999982 00 0 0 023
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
+..|.+|.+.|.+..|-. .|+.++++|+|++..+||++++ ..++.+.+|....+.++-+|.+ .++++.+.|.+
T Consensus 265 l~~ltgH~~vV~a~dWL~--gg~Q~vTaSWDRTAnlwDVEtg---e~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtT 337 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLA--GGQQMVTASWDRTANLWDVETG---EVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTT 337 (481)
T ss_pred eeeeeccccceEehhhhc--CcceeeeeeccccceeeeeccC---ceeccccCcchhccccccCCcc--eEEEEeccCce
Confidence 556789999999888864 3889999999999999999886 4788899999999999999974 58999999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
.++||.+.. +.....-++|...|++..|..+ ..+++|+.|.+|+|||+++-... +.++ -
T Consensus 338 FRLWDFRea--I~sV~VFQGHtdtVTS~vF~~d---------------d~vVSgSDDrTvKvWdLrNMRsp---lATI-R 396 (481)
T KOG0300|consen 338 FRLWDFREA--IQSVAVFQGHTDTVTSVVFNTD---------------DRVVSGSDDRTVKVWDLRNMRSP---LATI-R 396 (481)
T ss_pred eEeccchhh--cceeeeecccccceeEEEEecC---------------CceeecCCCceEEEeeeccccCc---ceee-e
Confidence 999999853 2223333699999999999764 57999999999999999864322 2222 1
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-eccCCCcEEEEEEccC---CCEEEEecCCceEE
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLT---GNLLAVADANNVTL 283 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spd---g~~la~~~~d~i~~ 283 (302)
-.++++.++.+--. ..||---+++.||+||+......+.++. ..+|.--|.+++|..+ .+++.+|-+..+.=
T Consensus 397 tdS~~NRvavs~g~----~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~g 472 (481)
T KOG0300|consen 397 TDSPANRVAVSKGH----PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAG 472 (481)
T ss_pred cCCccceeEeecCC----ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeee
Confidence 35668888877532 4566667778899999976432222211 2456666999999743 46666665446777
Q ss_pred eeecC
Q 022111 284 WKEAV 288 (302)
Q Consensus 284 w~~~~ 288 (302)
|++..
T Consensus 473 W~in~ 477 (481)
T KOG0300|consen 473 WKINT 477 (481)
T ss_pred eEecc
Confidence 88754
No 114
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1e-22 Score=189.12 Aligned_cols=220 Identities=23% Similarity=0.391 Sum_probs=162.7
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecC----------------CCceEEEEecCcccCeEEEEeeCCCCCCE
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN----------------SASQHLATLKGHRGPVWQVAWAHPKFGSI 71 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~----------------~~~~~~~~~~~h~~~v~~v~~~~~~~~~~ 71 (302)
..|.+.|+++.|++||++||+||+|+.|.||.... +..+.+..+.+|+..|..++|+|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--DSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--ccE
Confidence 47999999999999999999999999999998762 012356778999999999999874 789
Q ss_pred EEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC---
Q 022111 72 LASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH--- 148 (302)
Q Consensus 72 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h--- 148 (302)
|||+|.|.+|.||+..+- ..++++.+|...|..+.|-|- |+++|+-++|++|++|...+ |.+......+
T Consensus 144 lvS~s~DnsViiwn~~tF---~~~~vl~~H~s~VKGvs~DP~--Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~ 215 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTF---ELLKVLRGHQSLVKGVSWDPI--GKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEE 215 (942)
T ss_pred EEEecccceEEEEccccc---eeeeeeecccccccceEECCc--cCeeeeecCCceEEEEEccc---ceeeEeeccchhh
Confidence 999999999999987654 578889999999999999886 88999999999999998543 2221110011
Q ss_pred ---CCCeEEEEeCCCCCC----------Cceeec-------------c--------------cCCC--------c----e
Q 022111 149 ---PVGVTSVSWAPAMAP----------GALVGL-------------G--------------LLDP--------V----Q 176 (302)
Q Consensus 149 ---~~~v~~~~~~~~~~~----------~~~~~~-------------~--------------~~~~--------~----~ 176 (302)
.--...+.|+|++.- .....+ + +-.+ . -
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceE
Confidence 112566777776520 000000 0 0001 1 2
Q ss_pred eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.+|+||.|+.|-||...... .+-.+..+ ....|.+++|+||| -.|..+|.||+|.+.....
T Consensus 296 i~AvgSqDrSlSVW~T~~~R-Pl~vi~~l--f~~SI~DmsWspdG----~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPR-PLFVIHNL--FNKSIVDMSWSPDG----FSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEEEecCCccEEEEecCCCC-chhhhhhh--hcCceeeeeEcCCC----CeEEEEecCCeEEEEEcch
Confidence 68899999999999874331 11112222 34569999999996 7799999999999998864
No 115
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=2.2e-23 Score=170.76 Aligned_cols=242 Identities=22% Similarity=0.285 Sum_probs=189.1
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
--|.++|.+++|+.|..+||+|+.||+|++|.+.+ +.++..|. +|+..|++++|+.+ +..+.+++.|.++||--+
T Consensus 260 MMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t--G~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 260 MMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET--GQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVRIHGL 335 (508)
T ss_pred eecccceEEEeecccHHHhhccCcCCcEEEEEEec--chHHHHhhhhhccCeeEEEEccC--cchhhcccccceEEEecc
Confidence 34788999999999999999999999999999976 45666664 89999999999864 677889999999999988
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
.++ ++++.+.+|...|+...|.+| |..+++++.|++|++|+..+..+....... +...+|.++-.-|..
T Consensus 336 KSG---K~LKEfrGHsSyvn~a~ft~d--G~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKn----- 404 (508)
T KOG0275|consen 336 KSG---KCLKEFRGHSSYVNEATFTDD--GHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKN----- 404 (508)
T ss_pred ccc---hhHHHhcCccccccceEEcCC--CCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCC-----
Confidence 766 477889999999999999988 779999999999999998755443322221 334456666655532
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccc----cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQ----MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~----~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
...++.|...++|+|-++... .++.|. ...+.|.| +.+|.| ..+-+.++|+.+..|.+
T Consensus 405 --------peh~iVCNrsntv~imn~qGQ-----vVrsfsSGkREgGdFi~~-~lSpkG----ewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 405 --------PEHFIVCNRSNTVYIMNMQGQ-----VVRSFSSGKREGGDFINA-ILSPKG----EWIYCIGEDGVLYCFSV 466 (508)
T ss_pred --------CceEEEEcCCCeEEEEeccce-----EEeeeccCCccCCceEEE-EecCCC----cEEEEEccCcEEEEEEe
Confidence 357899999999999887642 233332 12345655 678985 78999999999999998
Q ss_pred ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
.+.+. ...+.-|+..+-.++-+|..+.||+-+.| -+++|+
T Consensus 467 ~sG~L---E~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 467 LSGKL---ERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCce---eeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 76542 23344455567789999999999999999 589996
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.6e-21 Score=157.91 Aligned_cols=216 Identities=20% Similarity=0.393 Sum_probs=163.9
Q ss_pred ccccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCc----------eEE---EEecCcccCeEEEEeeCCCCCC
Q 022111 5 KIETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSAS----------QHL---ATLKGHRGPVWQVAWAHPKFGS 70 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~----------~~~---~~~~~h~~~v~~v~~~~~~~~~ 70 (302)
.+...|.+.|+++...+. |++++||+.||.|.+||+.+... .++ ..-.+|.-.|..+.|.|- +--
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtG 115 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTG 115 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCc
Confidence 345579999999988764 79999999999999999965331 111 112468888999999764 345
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC-CcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL-GLSLACGSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~-~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
++.|+|-|.++++||.++.+ ....|+ -.+.|.+-+++|-.. .-++|+|..|-+|++.|+..+... ..+ ++|.
T Consensus 116 mFtssSFDhtlKVWDtnTlQ---~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s--H~L-sGHr 188 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQ---EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS--HTL-SGHR 188 (397)
T ss_pred eeecccccceEEEeecccce---eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce--eee-cccc
Confidence 88899999999999987653 333444 567788888887532 347999999999999999765321 333 5999
Q ss_pred CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-----------cccccccccccCCCceeEEEee
Q 022111 150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-----------WKMDCFPALQMHSDWVRSVAWA 218 (302)
Q Consensus 150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-----------~~~~~~~~~~~h~~~v~~v~~~ 218 (302)
..|.++.|+|.. .-.|++|+.|+.||+||++... .....+.+-..|.+.|+.++|+
T Consensus 189 ~~vlaV~Wsp~~-------------e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 189 DGVLAVEWSPSS-------------EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred CceEEEEeccCc-------------eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 999999999964 3679999999999999997531 0111122334688899999999
Q ss_pred CCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 219 PNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 219 p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.++ .++++.+.|..+|+|+....
T Consensus 256 Sd~----~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 256 SDA----RYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccc----hhhhhccCccceEEeecccC
Confidence 885 78999999999999998653
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.9e-22 Score=179.94 Aligned_cols=256 Identities=14% Similarity=0.217 Sum_probs=191.6
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCC-CCEEEEEeCCCeEEEEEcC
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKF-GSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~~~l~s~s~D~~i~iwd~~ 87 (302)
+.+..+.+++.+|+|++||+|..-|++|+|++.+ .+....+.+|+..|.++.|+.|.. .++||+++.|+.|+++|..
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK 534 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehh--hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence 4566799999999999999999999999999965 334456789999999999987643 3579999999999999986
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
.+ ..+++++.+|...|+++.|--.......++++.|+.|.+-...+.+.-. .+. .|+..+ ....+.
T Consensus 535 rn--y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~--~f~-r~t~t~---------~ktTlY 600 (1080)
T KOG1408|consen 535 RN--YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGR--LFP-RHTQTL---------SKTTLY 600 (1080)
T ss_pred cc--cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCce--ecc-cccccc---------ccceEE
Confidence 43 3577899999999999999765333578899999988763322211111 111 111111 112233
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 247 (302)
.+...+..+++++++.|++|+|||+.+++.. +.+..-.+|++..-.+...|.+ .+||+...|++|.++|..+..
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSg----iY~atScsdktl~~~Df~sgE- 674 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSG----IYLATSCSDKTLCFVDFVSGE- 674 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCc----cEEEEeecCCceEEEEeccch-
Confidence 3344445689999999999999999987533 2223334577777788888985 789999999999999987642
Q ss_pred ceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 248 QWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
. .....+|.+-|..+.|++|-+.|+++++| -|.+|+...
T Consensus 675 -c-vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 675 -C-VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred -h-hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 2 22346888889999999999999999999 589999754
No 118
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=1.6e-22 Score=163.74 Aligned_cols=225 Identities=20% Similarity=0.318 Sum_probs=165.0
Q ss_pred cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce-----eEE-------EEecCCCCCeeEEEecCCCCCcEE
Q 022111 52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW-----TQA-------HTFNDHKSSVNSIAWAPHELGLSL 119 (302)
Q Consensus 52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-----~~~-------~~~~~h~~~i~~l~~~pd~~~~~l 119 (302)
..|.+.|..+...+ ..|+++++|+.||.|.+||+++.... .+. .--.+|+-.|.++.|-|-+.| ++
T Consensus 40 r~HgGsvNsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-mF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-MF 117 (397)
T ss_pred ccCCCccceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-ee
Confidence 45889999999854 57999999999999999999654311 000 112458889999999998766 69
Q ss_pred EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc
Q 022111 120 ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM 199 (302)
Q Consensus 120 ~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~ 199 (302)
.+++-|.++++||..+..... .+ .-+..|.+-+|+|.... -.++|+|..|-.|++-|+.++
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~--~F--~me~~VYshamSp~a~s-----------HcLiA~gtr~~~VrLCDi~SG---- 178 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAV--DF--KMEGKVYSHAMSPMAMS-----------HCLIAAGTRDVQVRLCDIASG---- 178 (397)
T ss_pred ecccccceEEEeecccceeeE--Ee--ecCceeehhhcChhhhc-----------ceEEEEecCCCcEEEEeccCC----
Confidence 999999999999987532221 22 22455677777774311 146777888889999999988
Q ss_pred ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce----------e--eeeeccCCCcEEEEEEc
Q 022111 200 DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW----------E--GRVLKDFKTPVWSVSWS 267 (302)
Q Consensus 200 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~----------~--~~~~~~~~~~v~~~~~s 267 (302)
.+-+++.||.+.|.+|.|+|.. +-.|++||.||.||+||++....-+ . .+.-..|.+.|.+++|+
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~---e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSS---EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cceeeeccccCceEEEEeccCc---eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 5668899999999999999985 4689999999999999998641100 0 01112456789999999
Q ss_pred cCCCEEEEecCC-ceEEeeecCCce--EEEeeecCCC
Q 022111 268 LTGNLLAVADAN-NVTLWKEAVDGE--WQQVSVVEPQ 301 (302)
Q Consensus 268 pdg~~la~~~~d-~i~~w~~~~~~~--~~~~~~~~~~ 301 (302)
.||+++++.+-| .+++|++. +|+ ..++..+.+|
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~-~G~ntl~~~g~~~~n 291 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNME-SGRNTLREFGPIIHN 291 (397)
T ss_pred ccchhhhhccCccceEEeecc-cCccccccccccccc
Confidence 999999888776 89999974 333 5555444443
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.3e-21 Score=155.27 Aligned_cols=221 Identities=25% Similarity=0.491 Sum_probs=166.8
Q ss_pred cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC-CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111 52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130 (302)
Q Consensus 52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~-~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~ 130 (302)
.+|.+-|.++.|.. -|+++|||+.|++++|||.+ ....|.+....+.|.+.|..+.|-+-+-|+.+|+++.|++++|
T Consensus 10 s~h~DlihdVs~D~--~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF--YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecc--cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47899999999953 49999999999999999953 3455777788889999999999987678999999999999999
Q ss_pred EEecCC------CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC----ccccc
Q 022111 131 FTATAD------GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG----IWKMD 200 (302)
Q Consensus 131 ~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~----~~~~~ 200 (302)
|.-... ..|.......-....|+.+.|.|.. .|-.||+++.||++|||+..+. +|++.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h------------lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq 155 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH------------LGLKLAAASADGILRIYEAPDPMNLSQWTLQ 155 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchh------------cceEEEEeccCcEEEEEecCCccccccchhh
Confidence 964211 1232222111345578999999853 2567999999999999997654 23321
Q ss_pred c-----ccccccCCCceeEEEeeCCCCCCccEEEEEecC-----CeEEEEEeccCCcceee-eeeccCCCcEEEEEEccC
Q 022111 201 C-----FPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-----GTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLT 269 (302)
Q Consensus 201 ~-----~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spd 269 (302)
- ......+...-.||+|+|.. +....||.|+.+ +.++||......+.|.. ..+.++..+|..++|.|+
T Consensus 156 ~Ei~~~~~pp~~~~~~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 156 HEIQNVIDPPGKNKQPCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhccCCcccccCcceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 0 11223567778999999863 446778888877 47899988776555532 334688999999999996
Q ss_pred C----CEEEEecCCceEEeeec
Q 022111 270 G----NLLAVADANNVTLWKEA 287 (302)
Q Consensus 270 g----~~la~~~~d~i~~w~~~ 287 (302)
- .+||+|+.|+|+||+..
T Consensus 235 ~Gr~y~~lAvA~kDgv~I~~v~ 256 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDGVRIFKVK 256 (361)
T ss_pred cCCceeeEEEeecCcEEEEEEe
Confidence 2 68899999999999975
No 120
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=3e-22 Score=172.37 Aligned_cols=238 Identities=17% Similarity=0.249 Sum_probs=188.3
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
...+.++.+.+||+.|++||.-.++.|||+...+......+....-.+++++.+++ .+++++|..||.|.|||+.+.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq- 541 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQ- 541 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccc-
Confidence 34688899999999999999999999999976654333344443445778888764 789999999999999999875
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
..+.+|++|.+-+.|+.+++| |..|=||+.|++||-||+++........ ...+|.++.++|.
T Consensus 542 --~~VrqfqGhtDGascIdis~d--GtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP~---------- 603 (705)
T KOG0639|consen 542 --TLVRQFQGHTDGASCIDISKD--GTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCPT---------- 603 (705)
T ss_pred --eeeecccCCCCCceeEEecCC--CceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCCC----------
Confidence 478899999999999999998 7899999999999999998654322111 2346777777775
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE 250 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 250 (302)
+..|+.|-+.+.+.|....... .+.+..|++-|.++.|.+-| +.+++.+.|.-+-.|..--...
T Consensus 604 ----~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cG----kwfvStGkDnlLnawrtPyGas--- 667 (705)
T KOG0639|consen 604 ----GDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS--- 667 (705)
T ss_pred ----ccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccC----ceeeecCchhhhhhccCccccc---
Confidence 4789999999999988776542 23456799999999999875 8899999999999996532211
Q ss_pred eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 251 GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 251 ~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
.+-......|.++..|.|.++|++|+.| +..+|.+
T Consensus 668 -iFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 -IFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -eeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 1112345689999999999999999998 7888864
No 121
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=165.74 Aligned_cols=261 Identities=18% Similarity=0.297 Sum_probs=185.5
Q ss_pred cccccccceeEEEEccCC--CEEEEeeCCCcEEEEeec--CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 6 IETGHEDTVHDVAMDFYG--KRLATASSDSSIKIIGLS--NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~--~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
+..-|...|++++|+|.- +.+|+|..-|+|=+||+. .+....+..+..|+++|.+|.|+|.+ ...+.+.|+||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n-~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPAN-TSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCC-hhheeeeccCcee
Confidence 344578899999999964 588899999999999994 22234466788999999999998753 5577889999999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
++=|++... ...+..+..-...+..+.|+.+. + .++.+..=|...+||.+..+. ....+. .|...|++++++|..
T Consensus 260 R~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~-~-~vl~~~~~G~f~~iD~R~~~s-~~~~~~-lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 260 RLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAES-R-SVLFGDNVGNFNVIDLRTDGS-EYENLR-LHKKKITSVALNPVC 334 (498)
T ss_pred eeeeecchh-hHHHhhcCccceeeeeccccCCC-c-cEEEeecccceEEEEeecCCc-cchhhh-hhhcccceeecCCCC
Confidence 999997642 22333333344556777887653 3 466666666999999987653 222332 677899999999964
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
-.+|||||.|++++|||++.-..+...+-....|.-.|++..|||.+ ..|++.++|.+|||||
T Consensus 335 -------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 335 -------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----GTLLTTCQDNEIRVFD 397 (498)
T ss_pred -------------chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC----CceEeeccCCceEEee
Confidence 26899999999999999986433322122334699999999999996 3499999999999999
Q ss_pred ec---cCCcceeeeeeccC-C-C--cEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 242 CA---KEGEQWEGRVLKDF-K-T--PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 242 ~~---~~~~~~~~~~~~~~-~-~--~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
.. ....+ ...+.... . - .....+|.|+..+|++|-.- .|-+++.. .|+
T Consensus 398 ss~~sa~~~p-~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~-~~q 453 (498)
T KOG4328|consen 398 SSCISAKDEP-LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN-GGQ 453 (498)
T ss_pred cccccccCCc-cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC-CCE
Confidence 74 11111 11111111 1 1 23357899999999999655 68888854 444
No 122
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.8e-21 Score=165.22 Aligned_cols=212 Identities=21% Similarity=0.319 Sum_probs=160.8
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
.++|+++|.+++|..+- ..|||||.|.+|++||+..+ ++..++..|.+.|.++.|.+ ..+.+|++|+.|+++++.|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~-~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHP-YEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecC-CCceEEEeccccceEEeee
Confidence 45899999999887654 68999999999999999764 45667878999999999965 4688999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
.+.......... -.+.|-.++|.|... ..+.++..||+++-+|.+..+. ....+ ++|..+|+++++++..
T Consensus 316 ~R~~~~s~~~wk---~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~-~vwt~-~AHd~~ISgl~~n~~~---- 385 (463)
T KOG0270|consen 316 CRDPSNSGKEWK---FDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGK-PVWTL-KAHDDEISGLSVNIQT---- 385 (463)
T ss_pred ccCccccCceEE---eccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCC-ceeEE-EeccCCcceEEecCCC----
Confidence 975322112222 356789999998753 4688889999999999997652 33444 4899999999998754
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
..+++|++.|++|++|++....-+....+.+. -+...|.++.|+. .-++|.|+..+.++|||+...
T Consensus 386 ---------p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~---a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 386 ---------PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDV---AFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ---------CcceeeccccceEEEEeecCCCCccccccccc--ccceeecccCCCc---ceEEEecCccceEEEeecccC
Confidence 26899999999999999865321111111121 1225677788875 468899999999999998653
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.1e-20 Score=166.48 Aligned_cols=272 Identities=25% Similarity=0.421 Sum_probs=193.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce-----EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ-----HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
++.||++-|+++-|+|.+..|+|+++|+++.+|.....++- ++..+.|..+..+..-|+++ ++.+++-+.-|.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n--~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPN--SNVIIAHGRTGG 339 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCC--CCEEEEecccCc
Confidence 45699999999999999999999999999999987655432 23334444556788889764 678888899999
Q ss_pred EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec-CCCCeeeeeecccCCCCeEEEEeCC
Q 022111 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT-ADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
.++|...+...|.+...+.+|.+.|++++|.|. |.+|++.+.|.+-|+|-.- ....|.-..-.|.|...++|+++-+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps--GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS--GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCC--CCEEEEeccccceeeecccccccceeeecccccccccceeeehcc
Confidence 999985555567777788999999999999997 7799999999999997432 1112322222345666666666544
Q ss_pred CCC--------------------------------C-------Cc---eeec----------------------------
Q 022111 160 AMA--------------------------------P-------GA---LVGL---------------------------- 169 (302)
Q Consensus 160 ~~~--------------------------------~-------~~---~~~~---------------------------- 169 (302)
... . ++ .+++
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 100 0 00 0000
Q ss_pred ----------------------------------ccCCCceeEEEeeCCC-----cEEEEEEecCccccccccccccCCC
Q 022111 170 ----------------------------------GLLDPVQKLASCGCDN-----TVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 170 ----------------------------------~~~~~~~~l~s~~~D~-----~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
...++++++||+.... -|+||+..+ |. ..+.+.+|.-
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--W~--~~~~L~~HsL 573 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--WL--QVQELEGHSL 573 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--hh--hhheecccce
Confidence 0002355677765433 367777544 22 2346789999
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.|+.++||||+ ++|++.|.|+++.+|........ ......+.|.-=||+++|+|++.++|++++| +|++|...+
T Consensus 574 TVT~l~FSpdg----~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 574 TVTRLAFSPDG----RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred EEEEEEECCCC----cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 99999999995 88999999999999998543211 1111135565569999999999999999999 799999876
Q ss_pred C
Q 022111 289 D 289 (302)
Q Consensus 289 ~ 289 (302)
+
T Consensus 650 ~ 650 (764)
T KOG1063|consen 650 L 650 (764)
T ss_pred c
Confidence 5
No 124
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.87 E-value=2.4e-20 Score=150.93 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=182.4
Q ss_pred cccccceeEEEEccCC-----CEEEEeeCCCcEEEEeecCCC--ceEEEEe-----cCcccCeEEEEeeCCCCCCEEEEE
Q 022111 8 TGHEDTVHDVAMDFYG-----KRLATASSDSSIKIIGLSNSA--SQHLATL-----KGHRGPVWQVAWAHPKFGSILASC 75 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~-----~~l~s~~~d~~v~lw~~~~~~--~~~~~~~-----~~h~~~v~~v~~~~~~~~~~l~s~ 75 (302)
..|.-+++.+.|.|+. +.|||++ ..+|||.+..+. ..+...+ ..+.+++++..|+. -+.++|.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne-~dp~~igtS 169 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE-VDPNLIGTS 169 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCccccccccc-CCcceeEee
Confidence 3688899999999985 4666654 469999986322 1111111 24667899999964 468899999
Q ss_pred eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC-CCCeEE
Q 022111 76 SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH-PVGVTS 154 (302)
Q Consensus 76 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h-~~~v~~ 154 (302)
|-|-++.|||++.+.......++-.|..+|..++|.... -..+|+.+.||.+|+||++.-....+. .+... ..+...
T Consensus 170 SiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s-~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlR 247 (364)
T KOG0290|consen 170 SIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGS-RDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLR 247 (364)
T ss_pred cccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCc-cceEEEecCCCcEEEEEecccccceEE-ecCCCCCCccee
Confidence 999999999998763323334566799999999999753 358999999999999999853221111 11111 346778
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCC-cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDN-TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~-~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
++|++.. -.++|+-..|. .|.|.|++-+. ..+..+.+|++.|+.|+|.|.. ...|+|+++
T Consensus 248 LswnkqD-------------pnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS---~~hictaGD 308 (364)
T KOG0290|consen 248 LSWNKQD-------------PNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHS---SSHICTAGD 308 (364)
T ss_pred eccCcCC-------------chHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCC---CceeeecCC
Confidence 8888753 25677766655 59999998764 3456789999999999999985 589999999
Q ss_pred CCeEEEEEeccCCcc--eeeeeeccCCCcEEEEEEcc-CCCEEEEecCCceEEe
Q 022111 234 DGTVVIWTCAKEGEQ--WEGRVLKDFKTPVWSVSWSL-TGNLLAVADANNVTLW 284 (302)
Q Consensus 234 D~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~d~i~~w 284 (302)
|.-.-|||+.+.... ....+.-.-+.+|..+.|+| .++.|+++..+++.+-
T Consensus 309 D~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred cceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 999999999865321 11112222356799999996 5689999988876654
No 125
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1.2e-21 Score=164.95 Aligned_cols=207 Identities=21% Similarity=0.318 Sum_probs=152.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
.++.|--+.|+++.|.++++++++++.|+++++|++.. .....+|.||++.|+++.|.-. ...+++|+.|.++++|
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhhhcccccceeeehhhcc--ccceeeccccchhhhh
Confidence 44567778899999999999999999999999999975 3456789999999999998632 2348999999999999
Q ss_pred EcCCCCc------------e------------------------eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111 85 KEGNQND------------W------------------------TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128 (302)
Q Consensus 85 d~~~~~~------------~------------------------~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v 128 (302)
|+....- . .+..... -.+.|+++..+++ +..|.+++.|.++
T Consensus 289 Dl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~~--g~~lLsssRDdtl 365 (459)
T KOG0288|consen 289 DLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSMD--GLELLSSSRDDTL 365 (459)
T ss_pred hhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEee-cCcceeeEeeccC--CeEEeeecCCCce
Confidence 9854210 0 0111122 2358899999988 6688888999999
Q ss_pred EEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 129 SVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
.+.|++...-..+..... ......+.+.|||+ +.++++||.||.|+||++.+++ +...+..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd--------------~~YvaAGS~dgsv~iW~v~tgK----lE~~l~~ 427 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD--------------GSYVAAGSADGSVYIWSVFTGK----LEKVLSL 427 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCC--------------CceeeeccCCCcEEEEEccCce----EEEEecc
Confidence 999987543222211110 01123677788886 4899999999999999999874 2222322
Q ss_pred -CC-CceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111 208 -HS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240 (302)
Q Consensus 208 -h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw 240 (302)
+. ..|++++|+|.| ..+++++.++.+.+|
T Consensus 428 s~s~~aI~s~~W~~sG----~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSG----SGLLSADKQKAVTLW 458 (459)
T ss_pred CCCCcceEEEEEcCCC----chhhcccCCcceEec
Confidence 22 269999999985 679999999999999
No 126
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=5.4e-21 Score=156.91 Aligned_cols=252 Identities=17% Similarity=0.248 Sum_probs=176.3
Q ss_pred ccccceeEEEEccCC----CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 9 GHEDTVHDVAMDFYG----KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~----~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
.|....+.++|+.+. -+||.||.-|.|||.|+... +....+.+|...|..|+|.|. .+++|++||.|.+||+|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEE
Confidence 467778888887652 48999999999999998653 456678899999999999764 57899999999999999
Q ss_pred EcCCCCceeEEEE---ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-----------------
Q 022111 85 KEGNQNDWTQAHT---FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI----------------- 144 (302)
Q Consensus 85 d~~~~~~~~~~~~---~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~----------------- 144 (302)
++++. .++.. +.+|.+.|.+++|+++ |.++++|+.|.++++|++....-....+.
T Consensus 164 nI~~~---~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 164 NIQTD---VCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred eccCC---eEEEEecccccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc
Confidence 99876 35554 4569999999999998 66999999999999999862110000000
Q ss_pred --------cccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------cccccccccc
Q 022111 145 --------DQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------WKMDCFPALQ 206 (302)
Q Consensus 145 --------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------~~~~~~~~~~ 206 (302)
...|...|.++.|- +.+++|-|.++.|..|..-.-. ...+.+.++.
T Consensus 239 ~~fp~fst~diHrnyVDCvrw~----------------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~ 302 (385)
T KOG1034|consen 239 THFPDFSTTDIHRNYVDCVRWF----------------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD 302 (385)
T ss_pred cccccccccccccchHHHHHHH----------------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence 00111122222221 4689999999999999862110 0111222333
Q ss_pred cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC-ceEEe
Q 022111 207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN-NVTLW 284 (302)
Q Consensus 207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d-~i~~w 284 (302)
--...|.-+.|.-|. -.+.||.|.+.|.+.+||++.+.......+. ..-...|...+||.||.+|+...+| .|..|
T Consensus 303 ~~~c~iWfirf~~d~--~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 303 YPMCDIWFIRFAFDP--WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRW 380 (385)
T ss_pred cCccceEEEEEeecH--HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEE
Confidence 333446666665442 2378999999999999999876432221221 2234569999999999999888888 78888
Q ss_pred ee
Q 022111 285 KE 286 (302)
Q Consensus 285 ~~ 286 (302)
|.
T Consensus 381 dr 382 (385)
T KOG1034|consen 381 DR 382 (385)
T ss_pred Ee
Confidence 74
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=2.2e-20 Score=165.01 Aligned_cols=254 Identities=19% Similarity=0.285 Sum_probs=168.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
...|..+|.++.|-|-...|++++-|.+++.||+..........+.||.+.|.++||.+. +...+++|+.|+.+.|||+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEE
Confidence 347999999999999556899999999999999976443333347899999999999764 5789999999999999998
Q ss_pred CCCCc---------------e--eE-------EEEecCCCCCeeE---EEecCCCCCcEEEEEec-CCcEEEEEecCCCC
Q 022111 87 GNQND---------------W--TQ-------AHTFNDHKSSVNS---IAWAPHELGLSLACGSS-DGNISVFTATADGG 138 (302)
Q Consensus 87 ~~~~~---------------~--~~-------~~~~~~h~~~i~~---l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~ 138 (302)
+.... . ++ ......+...|.. +.+..|+. .||+++. |+.|++||+++...
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeeccccc
Confidence 64320 0 01 1112234444444 44455643 6887777 99999999986432
Q ss_pred e---eeeeecc--cC---CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC-
Q 022111 139 W---DTTRIDQ--AH---PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS- 209 (302)
Q Consensus 139 ~---~~~~~~~--~h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~- 209 (302)
. ....... .| ..++.++.....+ ..++|+|. |+.|+.|++..-.. .....+.++.
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-------------t~L~AsCt-D~sIy~ynm~s~s~--sP~~~~sg~~~ 316 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-------------TYLFASCT-DNSIYFYNMRSLSI--SPVAEFSGKLN 316 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCC-------------CeEEEEec-CCcEEEEeccccCc--CchhhccCccc
Confidence 1 0000000 01 1123333222211 24566666 99999999976422 2233444442
Q ss_pred --CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC--CCEEEEecCC-ceEEe
Q 022111 210 --DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT--GNLLAVADAN-NVTLW 284 (302)
Q Consensus 210 --~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~~~d-~i~~w 284 (302)
-.|.+ ..+|++ .++++|+.|....||.+...... ..++.+|...|..++|.|. ..+ +++++| ++++|
T Consensus 317 ~sf~vks-~lSpd~----~~l~SgSsd~~ayiw~vs~~e~~--~~~l~Ght~eVt~V~w~pS~~t~v-~TcSdD~~~kiW 388 (720)
T KOG0321|consen 317 SSFYVKS-ELSPDD----CSLLSGSSDEQAYIWVVSSPEAP--PALLLGHTREVTTVRWLPSATTPV-ATCSDDFRVKIW 388 (720)
T ss_pred ceeeeee-ecCCCC----ceEeccCCCcceeeeeecCccCC--hhhhhCcceEEEEEeeccccCCCc-eeeccCcceEEE
Confidence 22333 346774 78999999999999999865332 3455788888999999874 455 455777 89999
Q ss_pred eec
Q 022111 285 KEA 287 (302)
Q Consensus 285 ~~~ 287 (302)
+..
T Consensus 389 ~l~ 391 (720)
T KOG0321|consen 389 RLS 391 (720)
T ss_pred ecc
Confidence 984
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.8e-22 Score=180.17 Aligned_cols=195 Identities=27% Similarity=0.426 Sum_probs=161.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+.+|+.+|.++.|+++...|++|+.+|+|++||+++ .+.+.+|.+|...+..+.|.| .+.+.|+|+.|.-+++||.
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhh--hhhhhhhhccccCcceeeecc--ceEEeccccccccceehhh
Confidence 579999999999999999999999999999999975 345678999999999999965 3889999999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
+..+ +.+.+.+|...+.+++|+|+ |.+++.|+.|..+++||+..+. + ...+. .|+..+..+.+.|..
T Consensus 142 Rk~G---c~~~~~s~~~vv~~l~lsP~--Gr~v~~g~ed~tvki~d~~agk-~-~~ef~-~~e~~v~sle~hp~e----- 208 (825)
T KOG0267|consen 142 RKKG---CSHTYKSHTRVVDVLRLSPD--GRWVASGGEDNTVKIWDLTAGK-L-SKEFK-SHEGKVQSLEFHPLE----- 208 (825)
T ss_pred hccC---ceeeecCCcceeEEEeecCC--CceeeccCCcceeeeecccccc-c-ccccc-cccccccccccCchh-----
Confidence 7543 78889999999999999998 7799999999999999986442 1 22333 688889888888753
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~ 235 (302)
-++++||.|+++++||+++- ..+.........|.|++|+|++ ..+++|.+..
T Consensus 209 ---------~Lla~Gs~d~tv~f~dletf----e~I~s~~~~~~~v~~~~fn~~~----~~~~~G~q~s 260 (825)
T KOG0267|consen 209 ---------VLLAPGSSDRTVRFWDLETF----EVISSGKPETDGVRSLAFNPDG----KIVLSGEQIS 260 (825)
T ss_pred ---------hhhccCCCCceeeeecccee----EEeeccCCccCCceeeeecCCc----eeeecCchhh
Confidence 57899999999999999853 2333334456789999999996 5666765554
No 129
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.8e-21 Score=160.38 Aligned_cols=208 Identities=18% Similarity=0.337 Sum_probs=153.7
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc------------------------------------eE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS------------------------------------QH 47 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~------------------------------------~~ 47 (302)
.+++..|.+.|.+|+++. ..++++|+|++|++|.+..++. .+
T Consensus 102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P 179 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP 179 (433)
T ss_pred hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCc
Confidence 456789999999999986 6788999999999998432110 12
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
+.++.--.+.|.++.|+|- .-.+|++|+.|+.|.|||++...+ ++... ..-+-+.++|+|. +..+++|+.|-.
T Consensus 180 v~smswG~Dti~svkfNpv-ETsILas~~sDrsIvLyD~R~~~P---l~KVi-~~mRTN~IswnPe--afnF~~a~ED~n 252 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPV-ETSILASCASDRSIVLYDLRQASP---LKKVI-LTMRTNTICWNPE--AFNFVAANEDHN 252 (433)
T ss_pred cceeecCCCceeEEecCCC-cchheeeeccCCceEEEecccCCc---cceee-eeccccceecCcc--ccceeecccccc
Confidence 3334333456677777653 456899999999999999987653 33322 2345588999994 668999999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
++.||++.-. .+......|...|.++.|+|.+ +-|+|||.|++||||..+.+... +.+++-
T Consensus 253 lY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG--------------~EfvsgsyDksIRIf~~~~~~SR-diYhtk-- 313 (433)
T KOG0268|consen 253 LYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTG--------------QEFVSGSYDKSIRIFPVNHGHSR-DIYHTK-- 313 (433)
T ss_pred ceehhhhhhc--ccchhhcccceeEEEeccCCCc--------------chhccccccceEEEeecCCCcch-hhhhHh--
Confidence 9999987432 1122334788899999999974 78999999999999998765311 222111
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
--..|.||.||-|. ++|+|||+|++||+|...
T Consensus 314 RMq~V~~Vk~S~Ds----kyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 314 RMQHVFCVKYSMDS----KYIISGSDDGNVRLWKAK 345 (433)
T ss_pred hhheeeEEEEeccc----cEEEecCCCcceeeeecc
Confidence 12348999999885 789999999999999865
No 130
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=168.13 Aligned_cols=254 Identities=20% Similarity=0.271 Sum_probs=186.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
...|.+.|+.+.|-+....+++++.|+.+++|=.+.+.+ ..+..-.||+.+-.+|+|... .|..+.+++.|++++.+
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~-~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGS-QGHFILSAKQDRTLRSF 362 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeecc-CcEEEEecccCcchhhh
Confidence 447889999999999889999999999999997654333 334555789999999999643 48889999999998888
Q ss_pred EcCCCC------------------c-----------------------ee----------E------------EEEec--
Q 022111 85 KEGNQN------------------D-----------------------WT----------Q------------AHTFN-- 99 (302)
Q Consensus 85 d~~~~~------------------~-----------------------~~----------~------------~~~~~-- 99 (302)
++.... . |. . .+.+.
T Consensus 363 s~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~ 442 (910)
T KOG1539|consen 363 SVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK 442 (910)
T ss_pred hhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc
Confidence 642100 0 00 0 00111
Q ss_pred ---CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111 100 ---DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ 176 (302)
Q Consensus 100 ---~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 176 (302)
.....+++++.+++ |.....|...|.|.+|++..+-......-...|..+|+.++..- .++
T Consensus 443 ~~~~~~~~~~av~vs~C--GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~--------------~n~ 506 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFC--GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG--------------TNR 506 (910)
T ss_pred cccccCcceEEEEEecc--CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC--------------CCc
Confidence 11256778888887 77889999999999999865422111111246888888887542 247
Q ss_pred eEEEeeCCCcEEEEEEecCcc-------------------------------------ccccccccccCCCceeEEEeeC
Q 022111 177 KLASCGCDNTVKVWKMYNGIW-------------------------------------KMDCFPALQMHSDWVRSVAWAP 219 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~v~~~p 219 (302)
.++|++.+|.+++||.++... ..+..+.|.||.+.|++++|||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~ 586 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP 586 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence 799999999999999765320 0123466889999999999999
Q ss_pred CCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEee
Q 022111 220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWK 285 (302)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~ 285 (302)
|+ +.|++++.|++||+||+-+..- .-......+..+++|||+|++||++..| +|.+|-
T Consensus 587 Dg----rWlisasmD~tIr~wDlpt~~l----ID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 587 DG----RWLISASMDSTIRTWDLPTGTL----IDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CC----cEEEEeecCCcEEEEeccCcce----eeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 96 8899999999999999975421 1112345788999999999999999877 699996
No 131
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=151.81 Aligned_cols=214 Identities=17% Similarity=0.308 Sum_probs=146.9
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d 125 (302)
+..|++|.+.|++++|+.+ |++|||++.|++|++|++++-.. -.++.. +.-.+-.+.++|.||.. ..++++-..
T Consensus 79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~-s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCK-SVVVSVKRG 154 (420)
T ss_pred hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcc-eEEEEEccC
Confidence 3568999999999999864 99999999999999999864211 011111 11123458899999964 456677778
Q ss_pred CcEEEEEecC--CCCee-------eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111 126 GNISVFTATA--DGGWD-------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 126 ~~v~~~~~~~--~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
+++++|.+.+ ++... ...+...|... ++.++..+++.+|+||+.|..|.||+++..
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~--------------~i~iGiA~~~k~imsas~dt~i~lw~lkGq- 219 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD--------------IINIGIAGNAKYIMSASLDTKICLWDLKGQ- 219 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccc--------------eEEEeecCCceEEEEecCCCcEEEEecCCc-
Confidence 8999997753 22111 11111122222 222334445789999999999999999842
Q ss_pred cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc-ce----eeeeeccCCCcEEEEEEccCCC
Q 022111 197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE-QW----EGRVLKDFKTPVWSVSWSLTGN 271 (302)
Q Consensus 197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~-~~----~~~~~~~~~~~v~~~~~spdg~ 271 (302)
.+.........-+..+.||+| ++|++++.---+++|.+--.+. .. ..-.+++|...|.+++||++.+
T Consensus 220 ----~L~~idtnq~~n~~aavSP~G----RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~ 291 (420)
T KOG2096|consen 220 ----LLQSIDTNQSSNYDAAVSPDG----RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST 291 (420)
T ss_pred ----eeeeeccccccccceeeCCCC----cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc
Confidence 223333223334567889995 8999999999999999743221 11 1113578889999999999999
Q ss_pred EEEEecCC-ceEEeeecC
Q 022111 272 LLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 272 ~la~~~~d-~i~~w~~~~ 288 (302)
++++++.| +++|||..+
T Consensus 292 r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeEEEecCCcEEEeeccc
Confidence 99999999 799999754
No 132
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=3.8e-20 Score=149.59 Aligned_cols=238 Identities=20% Similarity=0.331 Sum_probs=167.8
Q ss_pred CCEEEEee----CCCcEEEEeecCCCceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeCC-------CeEEEEEcCCCC
Q 022111 23 GKRLATAS----SDSSIKIIGLSNSASQH-LATLKGHRGPVWQVAWAHPKFGSILASCSYD-------GQVIIWKEGNQN 90 (302)
Q Consensus 23 ~~~l~s~~----~d~~v~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-------~~i~iwd~~~~~ 90 (302)
.-.+++|. .|++|.+.+++.+.... ...|.-|.+.|+.|+-+| .+..+|+|+-.| ..+.||.+....
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P-~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSP-FDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCC-CCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 33455554 67889998886554332 234667889999999654 567889988653 246789885432
Q ss_pred c------eeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee---eeecccCCCCeEEEEeCCC
Q 022111 91 D------WTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT---TRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 91 ~------~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~ 160 (302)
. +.++..+. .+-++|.|+.|.|+ +..+++.. |+.|.+|++........ .....++....++-+|+|.
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pn--s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH 181 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPN--SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH 181 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCC--CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC
Confidence 2 22333343 45679999999997 55788776 89999999876543211 1112234556788889985
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
- ++..+++. .|+++..||+++-. +... -..|...|+++.|+|+. ...|+|+++|+.|||
T Consensus 182 H------------dgnqv~tt-~d~tl~~~D~RT~~----~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvri 241 (370)
T KOG1007|consen 182 H------------DGNQVATT-SDSTLQFWDLRTMK----KNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRI 241 (370)
T ss_pred C------------ccceEEEe-CCCcEEEEEccchh----hhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEE
Confidence 3 24555555 48899999998642 2222 25788899999999986 368999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccC-CCEEEEecCC-ceEEeee
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-GNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~d-~i~~w~~ 286 (302)
||+|..+.+ ...+.+|...||+++|+|- ..+|.++++| .|.||-+
T Consensus 242 WD~R~tk~p--v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 242 WDTRKTKFP--VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred EeccCCCcc--ccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 999987544 3445788899999999995 4566788888 7999976
No 133
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=3.5e-19 Score=145.91 Aligned_cols=265 Identities=21% Similarity=0.363 Sum_probs=204.5
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
-..+|++.+|++|+..+|.+-....|.||...... .+...+++.|...|+.|.|++. .+.|++|+.|+...+|...+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccCC
Confidence 34689999999999999999999999999986655 6778899999999999999864 67899999999999999866
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCCCcee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
+..|.+.-.+..++...+++.|+|.+ ..+|+|+..+.|.+|-.+..+.|-.. .+...+...|+++.|.|.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn------- 157 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN------- 157 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC-------
Confidence 77788888888899999999999984 48999999999999988776666432 233356778999999985
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEec-----C----cc----cc-ccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYN-----G----IW----KM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~-----~----~~----~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
+-+|+.|+.|+..||+...= . .| .+ ....++....++|..+.|+|+| +.|+=.+.
T Consensus 158 -------nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG----~~lawv~H 226 (361)
T KOG1523|consen 158 -------NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG----NRLAWVGH 226 (361)
T ss_pred -------cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC----CEeeEecC
Confidence 36899999999999998521 0 01 11 1122334567899999999996 88999999
Q ss_pred CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111 234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVE 299 (302)
Q Consensus 234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~ 299 (302)
|.++.+=|...... . ...+....-|..++.|--+...++ |+.+ .=.++...++|.|....+++
T Consensus 227 ds~v~~~da~~p~~-~-v~~~~~~~lP~ls~~~ise~~vv~-ag~~c~P~lf~~~~~~~l~~~~~ld 290 (361)
T KOG1523|consen 227 DSTVSFVDAAGPSE-R-VQSVATAQLPLLSVSWISENSVVA-AGYDCGPVLFVTDEEGGLSFARRLD 290 (361)
T ss_pred CCceEEeecCCCch-h-ccchhhccCCceeeEeecCCceee-cCCCCCceEEEeccccceeeehhcC
Confidence 99999988654321 1 122222236788999866555554 4455 76777777777888877665
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=162.42 Aligned_cols=252 Identities=19% Similarity=0.252 Sum_probs=178.4
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeC-----CC----CCCEEEEEeCCCeEEEE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAH-----PK----FGSILASCSYDGQVIIW 84 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~-----~~----~~~~l~s~s~D~~i~iw 84 (302)
.+.|++....|...-.|..+++||+.... ++ ...+--|+.-||.+.--| +. -...++||+.|++||+|
T Consensus 329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred EEEecCCCceEEEEEcCceEEEEeccccccccc-eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 46789888999999999999999985422 33 334456999999886543 00 01358899999999999
Q ss_pred EcCCCCceeE----------------------------------EEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111 85 KEGNQNDWTQ----------------------------------AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130 (302)
Q Consensus 85 d~~~~~~~~~----------------------------------~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~ 130 (302)
++.....-.. ....-+..--+++++.+|+ |+.||+|...|++++
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~--gqhLAsGDr~GnlrV 485 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPD--GQHLASGDRGGNLRV 485 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCC--cceecccCccCceEE
Confidence 9854110000 0000112346899999998 889999999999999
Q ss_pred EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111 131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
|++... ....+-.+|...|.++.|+-... ..++||+++.|+.|+|||+..+. ..++++.+|..
T Consensus 486 y~Lq~l---~~~~~~eAHesEilcLeyS~p~~-----------~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSs 548 (1080)
T KOG1408|consen 486 YDLQEL---EYTCFMEAHESEILCLEYSFPVL-----------TNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSS 548 (1080)
T ss_pred EEehhh---hhhhheecccceeEEEeecCchh-----------hhHhhhhccCCceEEEEeccccc---chhhhhccccc
Confidence 998643 22222248999999999874210 13789999999999999987542 45667777777
Q ss_pred ceeEEEeeCCCC-C--------------------------------------------CccEEEEEecCCeEEEEEeccC
Q 022111 211 WVRSVAWAPNLG-L--------------------------------------------PKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 211 ~v~~v~~~p~~~-~--------------------------------------------~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.|++|.|.-.+. . .-.+++++++|+.|||||+...
T Consensus 549 sITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg 628 (1080)
T KOG1408|consen 549 SITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG 628 (1080)
T ss_pred ceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc
Confidence 777777754431 0 1367999999999999999875
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
+......-..++.+..-.+...|.|.|||+..+| ++.++|.-
T Consensus 629 Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 629 KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEec
Confidence 4321111113455566678899999999999888 79999964
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=5.9e-19 Score=152.29 Aligned_cols=244 Identities=18% Similarity=0.291 Sum_probs=178.9
Q ss_pred cccccc-cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 6 IETGHE-DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 6 ~~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
++.+++ .-|.+++|.++|+ .++|..+|+|.||+... .+..++..+|.+.|.+++.-. +|++| ||+.|+.|..|
T Consensus 240 ~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~--~~~~k~~~aH~ggv~~L~~lr--~Gtll-SGgKDRki~~W 313 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT--NRISKQVHAHDGGVFSLCMLR--DGTLL-SGGKDRKIILW 313 (626)
T ss_pred ccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC--ceEEeEeeecCCceEEEEEec--CccEe-ecCccceEEec
Confidence 445543 5799999999996 66899999999999743 333444459999999999864 37655 69999999999
Q ss_pred EcCCCC--c---------ee------------------E--------EEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 85 KEGNQN--D---------WT------------------Q--------AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 85 d~~~~~--~---------~~------------------~--------~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
|-.-.. + .. . .....+|.+....++.+|+. .++++++.|++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~--~q~~T~gqdk~ 391 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK--NQLLTCGQDKH 391 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh--hheeeccCcce
Confidence 832100 0 00 0 01234688888899999984 48999999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
+++|+ ...-.|. . .-..++.++.|.|. ..+|.|...|...+.|..+. ..+..-..
T Consensus 392 v~lW~-~~k~~wt--~---~~~d~~~~~~fhps---------------g~va~Gt~~G~w~V~d~e~~----~lv~~~~d 446 (626)
T KOG2106|consen 392 VRLWN-DHKLEWT--K---IIEDPAECADFHPS---------------GVVAVGTATGRWFVLDTETQ----DLVTIHTD 446 (626)
T ss_pred EEEcc-CCceeEE--E---EecCceeEeeccCc---------------ceEEEeeccceEEEEecccc----eeEEEEec
Confidence 99997 2211221 1 22456778888875 37899999999999998763 22222222
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
.+++++++|+|+| .+||.||.|+.|.||-+...+... .+..+.+..+|..+.||+|+++|.+-+.| .|.+|+.
T Consensus 447 -~~~ls~v~ysp~G----~~lAvgs~d~~iyiy~Vs~~g~~y-~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 447 -NEQLSVVRYSPDG----AFLAVGSHDNHIYIYRVSANGRKY-SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred -CCceEEEEEcCCC----CEEEEecCCCeEEEEEECCCCcEE-EEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 7889999999996 889999999999999998765432 23333445889999999999999999999 8999965
Q ss_pred cC
Q 022111 287 AV 288 (302)
Q Consensus 287 ~~ 288 (302)
..
T Consensus 521 ~~ 522 (626)
T KOG2106|consen 521 SE 522 (626)
T ss_pred cc
Confidence 44
No 136
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=7.1e-20 Score=148.82 Aligned_cols=210 Identities=20% Similarity=0.342 Sum_probs=151.8
Q ss_pred CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111 53 GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT 132 (302)
Q Consensus 53 ~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~ 132 (302)
..++.|.+|+|+| +...+++.+|+|++||+|+++..+...+ +....|.++|.+++|+.| |..+++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccC--CceEEeeccCCceEEEE
Confidence 3567899999987 3456788999999999999976433333 344569999999999987 67899999999999999
Q ss_pred ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-----------ccc
Q 022111 133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-----------MDC 201 (302)
Q Consensus 133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-----------~~~ 201 (302)
+.++. ...+ ..|..+|.++.|.+.+ +...|+|||-|++||.||++..... +++
T Consensus 101 L~S~Q---~~~v-~~Hd~pvkt~~wv~~~------------~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv 164 (347)
T KOG0647|consen 101 LASGQ---VSQV-AAHDAPVKTCHWVPGM------------NYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV 164 (347)
T ss_pred ccCCC---eeee-eecccceeEEEEecCC------------CcceeEecccccceeecccCCCCeeeeeeccceeeehhc
Confidence 98652 2333 3799999999998754 1368999999999999998764210 000
Q ss_pred ---------------cc-------ccccC----CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 202 ---------------FP-------ALQMH----SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 202 ---------------~~-------~~~~h----~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
+. .++.+ +-.++||+..+|. ...|-||-.|.+-|..+...... ..-..+
T Consensus 165 ~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~----~~~alGsiEGrv~iq~id~~~~~-~nFtFk 239 (347)
T KOG0647|consen 165 LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK----DGFALGSIEGRVAIQYIDDPNPK-DNFTFK 239 (347)
T ss_pred cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC----CceEeeeecceEEEEecCCCCcc-CceeEE
Confidence 00 11122 2358999998885 44689999999999998763111 000112
Q ss_pred cCC------C---cEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 256 DFK------T---PVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 256 ~~~------~---~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
.|. . .|.+|+|+|.-..|+++++| ...+||-.
T Consensus 240 CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 240 CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 221 1 36789999987788888888 79999964
No 137
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=3.9e-20 Score=159.47 Aligned_cols=244 Identities=17% Similarity=0.262 Sum_probs=181.4
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-ceEEEEec--CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-SQHLATLK--GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~~~~~~~~--~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
.|...|-.+.+|...+++.+||. |-|+|||+.... ..++..|. .-...|+++...++ |+.|++|++-.++-|||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGeastlsiWD 493 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEASTLSIWD 493 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCC--CceEEeccccceeeeee
Confidence 67777888889988999999985 569999996532 22333332 24567888887764 88999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+..... .....+.-....-.+++.+|| .+...++..||+|.|||+.... ....+ ++|+..+.|+..+++
T Consensus 494 LAapTp-rikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLhnq~--~Vrqf-qGhtDGascIdis~d----- 562 (705)
T KOG0639|consen 494 LAAPTP-RIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLHNQT--LVRQF-QGHTDGASCIDISKD----- 562 (705)
T ss_pred ccCCCc-chhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcccce--eeecc-cCCCCCceeEEecCC-----
Confidence 976432 112223322334567888999 4578888999999999997542 22344 499999999988875
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
|..|-|||.|++||-||++++..... ....+.|.++.++|++ ..|+.|-+.+.+.|-.....
T Consensus 563 ---------GtklWTGGlDntvRcWDlregrqlqq-----hdF~SQIfSLg~cP~~----dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 563 ---------GTKLWTGGLDNTVRCWDLREGRQLQQ-----HDFSSQIFSLGYCPTG----DWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ---------CceeecCCCccceeehhhhhhhhhhh-----hhhhhhheecccCCCc----cceeeecccCcEEEEecCCc
Confidence 47899999999999999998732111 1235789999999995 78999999998766554432
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
. ...+.-|+.-|.++.|++.|+++++.+.| -+..|.+.-
T Consensus 625 ~----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 625 E----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred c----ceeecccccEEEEEEecccCceeeecCchhhhhhccCcc
Confidence 1 13345677889999999999999999888 488898743
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.9e-19 Score=153.70 Aligned_cols=252 Identities=13% Similarity=0.135 Sum_probs=176.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCC-EEEEEeCCCeEEEEEcCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGS-ILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~D~~i~iwd~~~~ 89 (302)
.+.|+++.|+|....|++||.|++++||.++++..+.+.++.--.-+|.+.+|.+. |. .+++++.-..+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecccc
Confidence 45899999999999999999999999999988766667777666778999999764 66 8899999999999998653
Q ss_pred Ccee----------------------------------EE--------EEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 90 NDWT----------------------------------QA--------HTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 90 ~~~~----------------------------------~~--------~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
...+ .+ .+++ .++.|..+.|+.| ++.|..++.+|.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSd--sk~l~~~~~~Ge 367 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSD--SKELLASGGTGE 367 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecC--CcEEEEEcCCce
Confidence 2100 00 0111 3477889999977 678888888999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc--ccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--WKMDCFPAL 205 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--~~~~~~~~~ 205 (302)
|.+|+++.........- ++. ..-++++-+++ +.+||+|+..|.|.|||..+.. .+.+.+.++
T Consensus 368 V~v~nl~~~~~~~rf~D-~G~-v~gts~~~S~n--------------g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~ 431 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVD-DGS-VHGTSLCISLN--------------GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTV 431 (514)
T ss_pred EEEEecCCcceEEEEee-cCc-cceeeeeecCC--------------CceEEeccCcceEEEeccchhhccCCCCchhhh
Confidence 99999986533322221 121 11244444443 5799999999999999976432 122334445
Q ss_pred ccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee--ccCCCcEEEEEEccCCCEEEEecCC-ceE
Q 022111 206 QMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADAN-NVT 282 (302)
Q Consensus 206 ~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~spdg~~la~~~~d-~i~ 282 (302)
..-...|+++.|+||.+. -.|+|-..+..+|+-.+-+..-. .... ..--+.|.+++|||.|-++|+|..+ .+.
T Consensus 432 dNLtt~Itsl~Fn~d~qi--LAiaS~~~knalrLVHvPS~TVF--sNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 432 DNLTTAITSLQFNHDAQI--LAIASRVKKNALRLVHVPSCTVF--SNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhhheeeeeeeeCcchhh--hhhhhhccccceEEEeccceeee--ccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 555667999999999632 22444445778998776542100 0000 1112458999999999999999888 799
Q ss_pred Eeeec
Q 022111 283 LWKEA 287 (302)
Q Consensus 283 ~w~~~ 287 (302)
||+.+
T Consensus 508 l~kL~ 512 (514)
T KOG2055|consen 508 LFKLH 512 (514)
T ss_pred eEeec
Confidence 99875
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.6e-19 Score=146.34 Aligned_cols=222 Identities=20% Similarity=0.332 Sum_probs=161.0
Q ss_pred EEEeeCCCcEEEEeecCCC----------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111 26 LATASSDSSIKIIGLSNSA----------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA 95 (302)
Q Consensus 26 l~s~~~d~~v~lw~~~~~~----------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 95 (302)
+++|++...|.=+++.-++ ..++..+.+|.++|++++.+ +.++||||.|-+|+|||++... ..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs----~~~~aSGssDetI~IYDm~k~~---ql 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS----GPYVASGSSDETIHIYDMRKRK---QL 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec----ceeEeccCCCCcEEEEeccchh---hh
Confidence 4567777655555442211 12366778999999999985 6899999999999999997753 45
Q ss_pred EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111 96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175 (302)
Q Consensus 96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
..+-.|.+.|++|.|.|+.....|++|+.||.|.+|+.. .|.......+|..+|+.++..|.+
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~---~W~~~~slK~H~~~Vt~lsiHPS~-------------- 139 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG---SWELLKSLKAHKGQVTDLSIHPSG-------------- 139 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC---CeEEeeeecccccccceeEecCCC--------------
Confidence 566679999999999987544479999999999999864 466544445899999999999874
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
++-++.+.|+.+++|++-.+...+.+ .+ .+. -..|.|+|+| .+++.++.++ |-||.+... .+..
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~--~L-~~~--at~v~w~~~G----d~F~v~~~~~-i~i~q~d~A------~v~~ 203 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVL--NL-KNK--ATLVSWSPQG----DHFVVSGRNK-IDIYQLDNA------SVFR 203 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceee--cc-CCc--ceeeEEcCCC----CEEEEEeccE-EEEEecccH------hHhh
Confidence 77788899999999999876432211 11 122 2349999986 6677776665 678877642 1222
Q ss_pred cC--CCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 256 DF--KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 256 ~~--~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.. ...+.++.|- ++..|++|.+| .|++||...
T Consensus 204 ~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 204 EIENPKRILCATFL-DGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred hhhccccceeeeec-CCceEEEecCCceEEEeccCC
Confidence 22 2346667774 56788888888 799999764
No 140
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=3.8e-18 Score=146.80 Aligned_cols=238 Identities=14% Similarity=0.120 Sum_probs=154.0
Q ss_pred ceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCC
Q 022111 13 TVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 13 ~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~ 90 (302)
.+.+++|+++++.+ ++++.++.|++||.... +....+..+.. +..++|+++ ++.+ ++++.|+.+++||+++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCe
Confidence 46779999999876 56678899999998653 33444544433 457888754 5655 555678999999997642
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
.+..+. +...+.+++|+|+ +..+++++.++ .+.+||..+... ..... .......+.|+|++
T Consensus 107 ---~~~~~~-~~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg-------- 168 (300)
T TIGR03866 107 ---VLAEIP-VGVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADG-------- 168 (300)
T ss_pred ---EEeEee-CCCCcceEEECCC--CCEEEEEecCCCeEEEEeCCCCeE--EEEEE--cCCCccEEEECCCC--------
Confidence 344444 2344688999998 66788877765 466678653211 11111 12234667888764
Q ss_pred ccCCCceeE-EEeeCCCcEEEEEEecCccccccccccc-----cCCC--ceeEEEeeCCCCCCccE-EEEEecCCeEEEE
Q 022111 170 GLLDPVQKL-ASCGCDNTVKVWKMYNGIWKMDCFPALQ-----MHSD--WVRSVAWAPNLGLPKST-IASASQDGTVVIW 240 (302)
Q Consensus 170 ~~~~~~~~l-~s~~~D~~v~iwd~~~~~~~~~~~~~~~-----~h~~--~v~~v~~~p~~~~~~~~-l~s~s~D~~i~iw 240 (302)
+.| +++..++.|++||+.++.. +..+. .+.. ....++|+|++ +. +++.+.++.+.+|
T Consensus 169 ------~~l~~~~~~~~~v~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~s~dg----~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 169 ------KELWVSSEIGGTVSVIDVATRKV----IKKITFEIPGVHPEAVQPVGIKLTKDG----KTAFVALGPANRVAVV 234 (300)
T ss_pred ------CEEEEEcCCCCEEEEEEcCccee----eeeeeecccccccccCCccceEECCCC----CEEEEEcCCCCeEEEE
Confidence 445 5666799999999987531 11111 1111 23468899986 44 4555567789999
Q ss_pred EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeecCCce
Q 022111 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEAVDGE 291 (302)
Q Consensus 241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~~~~~ 291 (302)
|+++... .... .....+++++|+|+|++|+++.. + .|++||......
T Consensus 235 d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 235 DAKTYEV--LDYL--LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ECCCCcE--EEEE--EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 9864321 1111 23346889999999999988743 4 799999865433
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.7e-18 Score=154.02 Aligned_cols=255 Identities=23% Similarity=0.304 Sum_probs=186.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
.+|++++|+...+.||.+=.||+|.+|++..... ....+.+++ ..|.+++|++ +..|+|.+.+|+|.-||+.+.+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-LEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCce-eeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecccCc
Confidence 5789999999999999999999999999976432 334555554 5689999973 6788999999999999998764
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
+...+....+.|.+++.+|. +..++.|+.||.+..++...+ ...........+..+.++.|+|++
T Consensus 102 ---~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s~~p~-~I~~~r~l~rq~sRvLslsw~~~~--------- 166 (691)
T KOG2048|consen 102 ---QKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFSIGPD-KITYKRSLMRQKSRVLSLSWNPTG--------- 166 (691)
T ss_pred ---eeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEecCCc-eEEEEeecccccceEEEEEecCCc---------
Confidence 45556666789999999997 468999999997766665533 222222211345679999999874
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCccccc---ccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMD---CFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~ 246 (302)
..|++|+.||.|++||+..+..... .+..+.. ..--|.+|.|-.+ .+|++|..-|+|++||.....
T Consensus 167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-----~tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 167 -----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-----STIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred -----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-----CcEEEecCCceEEEEcccCcc
Confidence 6799999999999999987742210 0111111 2334667766544 579999999999999976432
Q ss_pred cceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce-EEEeeec
Q 022111 247 EQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE-WQQVSVV 298 (302)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~-~~~~~~~ 298 (302)
. ......|...|.+++-+++++++.+|+-| .+..+....++. |+..+.-
T Consensus 237 L---iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r 287 (691)
T KOG2048|consen 237 L---IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRR 287 (691)
T ss_pred h---hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccc
Confidence 1 12234566789999999999999999888 787777755544 8776543
No 142
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.3e-19 Score=143.53 Aligned_cols=203 Identities=18% Similarity=0.298 Sum_probs=144.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+.+.||++.|++|+.+|-++.++|++.|++||+||+.....+.+..+. ..+ .++|.|. |-++|++.....|+||
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~p--i~AfDp~--GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRP--IAAFDPE--GLIFALANGSELIKLY 167 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCc--ceeECCC--CcEEEEecCCCeEEEE
Confidence 457899999999999999999999999999999999755443333222 223 3677653 8888888887799999
Q ss_pred EcCCCCceeEEEEec---CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC---eEEEEeC
Q 022111 85 KEGNQNDWTQAHTFN---DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG---VTSVSWA 158 (302)
Q Consensus 85 d~~~~~~~~~~~~~~---~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~---v~~~~~~ 158 (302)
|++.-.. .+..++. +-+...+.+.|+|| |+.++.+...+.+.+.|.-.+.. ...+. .++.. -.+..|.
T Consensus 168 D~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~d--GK~iLlsT~~s~~~~lDAf~G~~--~~tfs-~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 168 DLRSFDK-GPFTTFSITDNDEAEWTDLEFSPD--GKSILLSTNASFIYLLDAFDGTV--KSTFS-GYPNAGNLPLSATFT 241 (311)
T ss_pred EecccCC-CCceeEccCCCCccceeeeEEcCC--CCEEEEEeCCCcEEEEEccCCcE--eeeEe-eccCCCCcceeEEEC
Confidence 9975321 2333333 34678899999998 77888888899998887654321 11221 22111 1344555
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-CCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-HSDWVRSVAWAPNLGLPKSTIASASQDGTV 237 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i 237 (302)
|+ ++++++|+.||+|.+|++.++. .+..+.+ +.+++.|+.|+|.. .+++| .+..+
T Consensus 242 Pd--------------s~Fvl~gs~dg~i~vw~~~tg~----~v~~~~~~~~~~~~~~~fnP~~----~mf~s--a~s~l 297 (311)
T KOG1446|consen 242 PD--------------SKFVLSGSDDGTIHVWNLETGK----KVAVLRGPNGGPVSCVRFNPRY----AMFVS--ASSNL 297 (311)
T ss_pred CC--------------CcEEEEecCCCcEEEEEcCCCc----EeeEecCCCCCCccccccCCce----eeeee--cCceE
Confidence 54 6899999999999999998873 2344555 78889999999973 34544 46678
Q ss_pred EEEEec
Q 022111 238 VIWTCA 243 (302)
Q Consensus 238 ~iwd~~ 243 (302)
-+|-..
T Consensus 298 ~fw~p~ 303 (311)
T KOG1446|consen 298 VFWLPD 303 (311)
T ss_pred EEEecc
Confidence 888654
No 143
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-20 Score=175.85 Aligned_cols=247 Identities=19% Similarity=0.383 Sum_probs=181.8
Q ss_pred ceeEEEEccCCCE----EEEeeCCCcEEEEeecC----CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 13 TVHDVAMDFYGKR----LATASSDSSIKIIGLSN----SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 13 ~v~~~~~s~~~~~----l~s~~~d~~v~lw~~~~----~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
..+.++|.+.+.. ||.|..||+|.+|+... ...+.+.+...|++.|..+.|++. .+++||+|+.||.|.||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILIW 144 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEEe
Confidence 4577889887765 88889999999999743 223446677889999999999875 47899999999999999
Q ss_pred EcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCC
Q 022111 85 KEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMA 162 (302)
Q Consensus 85 d~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 162 (302)
|++.... +..- -..-.+.|.+++|+... ..+||+++.++++.|||++..... ..+.. .....+..+.|+|+.
T Consensus 145 Dlnn~~t--P~~~~~~~~~~eI~~lsWNrkv-qhILAS~s~sg~~~iWDlr~~~pi--i~ls~~~~~~~~S~l~WhP~~- 218 (1049)
T KOG0307|consen 145 DLNKPET--PFTPGSQAPPSEIKCLSWNRKV-SHILASGSPSGRAVIWDLRKKKPI--IKLSDTPGRMHCSVLAWHPDH- 218 (1049)
T ss_pred ccCCcCC--CCCCCCCCCcccceEeccchhh-hHHhhccCCCCCceeccccCCCcc--cccccCCCccceeeeeeCCCC-
Confidence 9975321 1111 11245789999998642 457999999999999999865322 12211 112347899999975
Q ss_pred CCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 163 PGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
..+|++++.|. .|.+||++... ..++.+++|...|.+++|++.. ..+++|++.|+.|.+
T Consensus 219 ------------aTql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D---~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 219 ------------ATQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQD---PRLLLSSGKDNRIIC 280 (1049)
T ss_pred ------------ceeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCC---chhhhcccCCCCeeE
Confidence 35677776654 58899998653 3456778999999999999974 578999999999999
Q ss_pred EEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeec
Q 022111 240 WTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 240 wd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~ 287 (302)
|+..+.. ....+ .....++..+.|+|.. .++++++=+ .|-|+...
T Consensus 281 wN~~tgE--vl~~~-p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 281 WNPNTGE--VLGEL-PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ecCCCce--Eeeec-CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 9987531 11111 2234678899999965 477777767 68888763
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.4e-19 Score=145.13 Aligned_cols=249 Identities=15% Similarity=0.251 Sum_probs=165.0
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111 14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT 93 (302)
Q Consensus 14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 93 (302)
-.++.|++.|.+||+|+.||.|-|||+.+- ..-..+.+|..+|.+++|+++ |+.|+|+|.|-.|++||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs--- 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS--- 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC---
Confidence 567899999999999999999999999753 234568899999999999975 8999999999999999997654
Q ss_pred EEEEecCCCCCeeEEEecC---------------------------------------------CCCCcEEEEEecCCcE
Q 022111 94 QAHTFNDHKSSVNSIAWAP---------------------------------------------HELGLSLACGSSDGNI 128 (302)
Q Consensus 94 ~~~~~~~h~~~i~~l~~~p---------------------------------------------d~~~~~l~sg~~d~~v 128 (302)
+++.+. ...+|..+.|+| +..|+++++|...|.+
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKL 177 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceE
Confidence 222222 122333333322 2346677777777777
Q ss_pred EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc-----cccccc
Q 022111 129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-----KMDCFP 203 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-----~~~~~~ 203 (302)
-+|+..+.... ..++......|..+.++. .+.+|+.-+.|+.||.|++..-.. .....+
T Consensus 178 lv~~a~t~e~v--as~rits~~~IK~I~~s~--------------~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 178 LVYDAETLECV--ASFRITSVQAIKQIIVSR--------------KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEecchheee--eeeeechheeeeEEEEec--------------cCcEEEEecCCceEEEEehhhhcccCccCCcChhH
Confidence 77776543211 111111123455555543 357899999999999999863210 011111
Q ss_pred cccc--CCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccCC-CcEEEEEEccCCCEEEEecCC
Q 022111 204 ALQM--HSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDFK-TPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 204 ~~~~--h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~~d 279 (302)
.+.. .+-.=++++|+.++ .++++++ ..+.+.||.-.... ..+++.+.+ .....+.|.|-...|++-.++
T Consensus 242 K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred HHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeeccCC
Confidence 1110 11122467888775 5666665 46689999865432 234555555 457889999988888888778
Q ss_pred ceEEeeecCCceEE
Q 022111 280 NVTLWKEAVDGEWQ 293 (302)
Q Consensus 280 ~i~~w~~~~~~~~~ 293 (302)
.+++|....-.-|-
T Consensus 315 ~v~iw~~~~~enws 328 (405)
T KOG1273|consen 315 VVYIWAVVQVENWS 328 (405)
T ss_pred ceEEEEeecccchh
Confidence 99999876544443
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=7.8e-20 Score=157.40 Aligned_cols=240 Identities=18% Similarity=0.262 Sum_probs=173.4
Q ss_pred ceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCc--eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 13 TVHDVAMDFYGK-RLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 13 ~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
.+.+++|+.... ..|+.+-|+.+++|.-..+.+ +.+..+.+.. -.|++.. ..+.++++|+..+.|+|||++..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~--~~Cv~~~--s~S~y~~sgG~~~~Vkiwdl~~k 111 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN--AFCVACA--SQSLYEISGGQSGCVKIWDLRAK 111 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccch--HHHHhhh--hcceeeeccCcCceeeehhhHHH
Confidence 377888876552 334555788999997654322 2233444432 2333322 12578999999999999999743
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
.+...+++|+..|+++.++-. ..+||+++..|-|.|-.+.+.. ....+.......|+-+.|+|...
T Consensus 112 ---l~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr------- 177 (673)
T KOG4378|consen 112 ---LIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKR------- 177 (673)
T ss_pred ---HHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccc-------
Confidence 245567899999999999865 3489999999999998765432 22334323345577888988642
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
.+|.+++.+|.|.+||+.... ....-...|..+-..|+|+|.. +..|++.+.|+.|.+||.+....
T Consensus 178 ------~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP~~gicfspsn---e~l~vsVG~Dkki~~yD~~s~~s-- 243 (673)
T KOG4378|consen 178 ------FLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAPCRGICFSPSN---EALLVSVGYDKKINIYDIRSQAS-- 243 (673)
T ss_pred ------eeeEeeccCCeEEEEeccCCC---cccchhhhccCCcCcceecCCc---cceEEEecccceEEEeecccccc--
Confidence 468889999999999997542 1223346799999999999975 57899999999999999985321
Q ss_pred eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 250 EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
... ..+..|..+++|+++|.+|++|.++ .|..||+
T Consensus 244 ~~~--l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 244 TDR--LTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cce--eeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 111 2356789999999999999999888 6999997
No 146
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=5.5e-19 Score=142.98 Aligned_cols=254 Identities=23% Similarity=0.383 Sum_probs=178.4
Q ss_pred ccccccccceeEEEEccCC-CEEEEeeCC-------CcEEEEeecCCC-------ceEEEEec-CcccCeEEEEeeCCCC
Q 022111 5 KIETGHEDTVHDVAMDFYG-KRLATASSD-------SSIKIIGLSNSA-------SQHLATLK-GHRGPVWQVAWAHPKF 68 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~s~~~d-------~~v~lw~~~~~~-------~~~~~~~~-~h~~~v~~v~~~~~~~ 68 (302)
+++..|.++|..++-+|.. +.|+++..+ ..+.||.+..+. .+++..|. .|-+.|.++.|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-- 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-- 134 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC--
Confidence 3466788999999988865 566665432 236789884322 22344454 46678999999764
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCcee-EE--EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWT-QA--HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~-~~--~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~ 145 (302)
+..|++-. |..|.+|++.+..... .+ ..-.++....++-+|+|...+..+++. .|+++..||.++..+ ...++
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~--~~sI~ 210 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKK--NNSIE 210 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhh--hcchh
Confidence 67777655 8899999987653211 00 111236677888899997667777775 588999999996543 23455
Q ss_pred ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225 (302)
Q Consensus 146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 225 (302)
.+|...|..+.|+|.. ...|+||+.|+.|+|||.+... ..+.++.+|..||.+|.|+|.. .
T Consensus 211 dAHgq~vrdlDfNpnk-------------q~~lvt~gDdgyvriWD~R~tk---~pv~el~~HsHWvW~VRfn~~h---d 271 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNK-------------QHILVTCGDDGYVRIWDTRKTK---FPVQELPGHSHWVWAVRFNPEH---D 271 (370)
T ss_pred hhhcceeeeccCCCCc-------------eEEEEEcCCCccEEEEeccCCC---ccccccCCCceEEEEEEecCcc---c
Confidence 5888889999999864 4679999999999999998754 3456788999999999999974 5
Q ss_pred cEEEEEecCCeEEEEEeccCC----------------c-------ceee---eeeccCCCcEEEEEEcc-CCCEEEEecC
Q 022111 226 STIASASQDGTVVIWTCAKEG----------------E-------QWEG---RVLKDFKTPVWSVSWSL-TGNLLAVADA 278 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~~~----------------~-------~~~~---~~~~~~~~~v~~~~~sp-dg~~la~~~~ 278 (302)
..|+||+.|..+-+|...+.. + +.+. ....+|++.|++++||. |-=++|+-+=
T Consensus 272 qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY 351 (370)
T KOG1007|consen 272 QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY 351 (370)
T ss_pred eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc
Confidence 789999999999999764311 0 0000 01245678899999985 3344555555
Q ss_pred C-ceEE
Q 022111 279 N-NVTL 283 (302)
Q Consensus 279 d-~i~~ 283 (302)
| .+.|
T Consensus 352 DGRviI 357 (370)
T KOG1007|consen 352 DGRVII 357 (370)
T ss_pred CceEEe
Confidence 5 3444
No 147
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=154.07 Aligned_cols=217 Identities=18% Similarity=0.218 Sum_probs=153.5
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
...+-|.+.|++++|.|...-++||+|..-|+|-+||+... .....+..+..|..+|.++.|+|... .++++.|.||+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-s~i~ssSyDGt 258 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-SQIYSSSYDGT 258 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-hheeeeccCce
Confidence 34456889999999976432378999999999999999522 12234567788999999999999853 57899999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
|++-|++....-...... .-.....++.++. ....++.+..=|.+.+||++.+.. .+..+..
T Consensus 259 iR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~--------------e~~~vl~~~~~G~f~~iD~R~~~s---~~~~~~l 320 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLD-TDNIWFSSLDFSA--------------ESRSVLFGDNVGNFNVIDLRTDGS---EYENLRL 320 (498)
T ss_pred eeeeeecchhhHHHhhcC-ccceeeeeccccC--------------CCccEEEeecccceEEEEeecCCc---cchhhhh
Confidence 999988642110000110 0011122333322 234455665556899999997642 2344567
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee-eeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
|+..|++|+++|.- +.+|||+|.|++.+|||++........ .....|.-.|.+..|||+|--|++.+.| .|+||+
T Consensus 321 h~kKI~sv~~NP~~---p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 321 HKKKITSVALNPVC---PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFD 397 (498)
T ss_pred hhcccceeecCCCC---chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEee
Confidence 88899999999974 688999999999999999875432111 1124677889999999987668888888 799999
Q ss_pred ec
Q 022111 286 EA 287 (302)
Q Consensus 286 ~~ 287 (302)
..
T Consensus 398 ss 399 (498)
T KOG4328|consen 398 SS 399 (498)
T ss_pred cc
Confidence 84
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=9.8e-19 Score=147.25 Aligned_cols=143 Identities=28% Similarity=0.505 Sum_probs=115.3
Q ss_pred ccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCC-------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 11 EDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSA-------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 11 ~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
..+|+++.|..+.. .|||||.|..||||.+.... .+....|..|...|+.++|++. |++||||+.+|.+.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF 90 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence 45899999998876 99999999999999884321 1234567889999999999864 89999999999999
Q ss_pred EEEcC--------C-----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 83 IWKEG--------N-----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 83 iwd~~--------~-----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
+|... + ...|.....+.+|...|..++|+|+ +..+++++.|+.+++||+..+. .......|.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~---l~~~~~dh~ 165 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQ---LLAILDDHE 165 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccce---eEeeccccc
Confidence 99765 1 1225556678889999999999998 6699999999999999998542 222233688
Q ss_pred CCeEEEEeCCC
Q 022111 150 VGVTSVSWAPA 160 (302)
Q Consensus 150 ~~v~~~~~~~~ 160 (302)
.-+..++|.|-
T Consensus 166 ~yvqgvawDpl 176 (434)
T KOG1009|consen 166 HYVQGVAWDPL 176 (434)
T ss_pred cccceeecchh
Confidence 88888999884
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.3e-18 Score=156.84 Aligned_cols=229 Identities=21% Similarity=0.341 Sum_probs=169.2
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
|...|.+++. ++.+|++|+.+++|.+|.+.+.... ..+.--+-++++++|+.+ |+++|.||.|-.|++-+..+.
T Consensus 55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~--~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~ 128 (933)
T KOG1274|consen 55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEED--TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS 128 (933)
T ss_pred cCceeEEEee--cccceEEeeccceEEEeeCCCCCcc--ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc
Confidence 5666776664 4568999999999999998654322 122233557889999864 899999999999999988665
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----ecccCCCCeEEEEeCCCCCCC
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----IDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~ 164 (302)
. ....+.+|+++|.+|.|+|. +.+||+.+.||+|++|++.......... ........+..++|+|.+
T Consensus 129 s---~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~--- 200 (933)
T KOG1274|consen 129 S---QEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG--- 200 (933)
T ss_pred c---hheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC---
Confidence 3 56678899999999999998 6799999999999999987542211110 000113346789999974
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..|+..+.|+.|++|+..+....+.. ....|...+.++.|+|.| .+||+++.||.|-|||+++
T Consensus 201 -----------g~la~~~~d~~Vkvy~r~~we~~f~L--r~~~~ss~~~~~~wsPnG----~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 201 -----------GTLAVPPVDNTVKVYSRKGWELQFKL--RDKLSSSKFSDLQWSPNG----KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred -----------CeEEeeccCCeEEEEccCCceeheee--cccccccceEEEEEcCCC----cEEeeeccCCcEEEEeccc
Confidence 56777778999999998765322221 123345559999999996 7899999999999999985
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEe
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA 276 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 276 (302)
.. ..++...|.+++|-|+++.|..-
T Consensus 264 ~~-------~~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 264 HE-------RHEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred ch-------hccccceeEEEecCCCCCeeEEE
Confidence 21 14556779999999998776444
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=2.1e-18 Score=141.58 Aligned_cols=254 Identities=19% Similarity=0.264 Sum_probs=178.3
Q ss_pred cceeEEEEc-------cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCe---EEEEeeCCCCCCEEEEEeCCCeE
Q 022111 12 DTVHDVAMD-------FYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPV---WQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 12 ~~v~~~~~s-------~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v---~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
..|++.+|- |+..++|+.+.|.-|.+||.-.+..+.-.....|...+ .+++|+|+ |.+|+. +..+.|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D--Geqlfa-Gykrci 181 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD--GEQLFA-GYKRCI 181 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC--CCeEee-cccceE
Confidence 356666653 55678999999999999997554444333334565554 47999875 888765 567899
Q ss_pred EEEEcCCCCceeEEEE-----ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEE
Q 022111 82 IIWKEGNQNDWTQAHT-----FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVS 156 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~-----~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 156 (302)
+++|+....+..+... -.+..+-|.+++|+|-. ...+|.|+...++-||.-....+. .+..+|...|+.+.
T Consensus 182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl---~llggh~gGvThL~ 257 (406)
T KOG2919|consen 182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPL---QLLGGHGGGVTHLQ 257 (406)
T ss_pred EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCce---eeecccCCCeeeEE
Confidence 9999844333222222 22347889999999985 357999999999999865443332 23348999999999
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCccccccccccccCCC-ceeEEEeeCCCCCCccEEEEEecC
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQMHSD-WVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~~h~~-~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
|.+++ ..|.+|+. |..|-.||++.-. ..+..+..|.+ .--.|-|.-+. .++.|++|+.|
T Consensus 258 ~~edG--------------n~lfsGaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~--~~~~LasG~td 318 (406)
T KOG2919|consen 258 WCEDG--------------NKLFSGARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDP--KGEILASGDTD 318 (406)
T ss_pred eccCc--------------CeecccccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCC--CCceeeccCCC
Confidence 99975 57788765 7789999998643 33455666655 33445554321 24899999999
Q ss_pred CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111 235 GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293 (302)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~ 293 (302)
|.|++||++..... ......++..+..++++|--.++|+++...+.-...+++|+.+
T Consensus 319 G~V~vwdlk~~gn~--~sv~~~~sd~vNgvslnP~mpilatssGqr~f~~~~dD~ge~~ 375 (406)
T KOG2919|consen 319 GSVRVWDLKDLGNE--VSVTGNYSDTVNGVSLNPIMPILATSSGQRIFKYPKDDNGELE 375 (406)
T ss_pred ccEEEEecCCCCCc--ccccccccccccceecCcccceeeeccCceeecCCCccccccc
Confidence 99999999874431 2334566778999999999888888877666555555566554
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.7e-18 Score=141.15 Aligned_cols=207 Identities=18% Similarity=0.314 Sum_probs=150.1
Q ss_pred cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111 54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~ 133 (302)
.+..|.+|.|++ . +..|+.+++||++++||..... ....++ |..++.+++|.++ ..+++|+.|+.|+.+|+
T Consensus 12 P~d~IS~v~f~~-~-~~~LLvssWDgslrlYdv~~~~---l~~~~~-~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 12 PEDGISSVKFSP-S-SSDLLVSSWDGSLRLYDVPANS---LKLKFK-HGAPLLDCAFADE---STIVTGGLDGQVRRYDL 82 (323)
T ss_pred ChhceeeEEEcC-c-CCcEEEEeccCcEEEEeccchh---hhhhee-cCCceeeeeccCC---ceEEEeccCceEEEEEe
Confidence 356799999984 3 3455566799999999986641 233343 8999999999874 37999999999999999
Q ss_pred cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111 134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 213 (302)
..+.. ..+ ..|..+++++.+++.. ..+++||.|++|++||.+... ...++.. ...|.
T Consensus 83 n~~~~---~~i-gth~~~i~ci~~~~~~--------------~~vIsgsWD~~ik~wD~R~~~----~~~~~d~-~kkVy 139 (323)
T KOG1036|consen 83 NTGNE---DQI-GTHDEGIRCIEYSYEV--------------GCVISGSWDKTIKFWDPRNKV----VVGTFDQ-GKKVY 139 (323)
T ss_pred cCCcc---eee-ccCCCceEEEEeeccC--------------CeEEEcccCccEEEEeccccc----ccccccc-CceEE
Confidence 86543 222 3788999999998743 689999999999999998632 1222222 23688
Q ss_pred EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee----------------------------eeee-----------
Q 022111 214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE----------------------------GRVL----------- 254 (302)
Q Consensus 214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~----------------------------~~~~----------- 254 (302)
|++.+ ++.|+.|..|+.+.+||++......+ +++.
T Consensus 140 ~~~v~------g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 140 CMDVS------GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEecc------CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 88765 46799999999999999987432210 0000
Q ss_pred ------ccCC---------CcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEeeec
Q 022111 255 ------KDFK---------TPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVSVV 298 (302)
Q Consensus 255 ------~~~~---------~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~ 298 (302)
+.|. -||.+++|+|--..||+|++| -|.+||...-+++.++...
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 0010 268899999987789999999 5999998655566555544
No 152
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=4.1e-18 Score=154.77 Aligned_cols=254 Identities=22% Similarity=0.285 Sum_probs=174.9
Q ss_pred ccceeEEEEccC-CCEEEEeeCCCcEEEEeecCCCce---EE-EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 11 EDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNSASQ---HL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 11 ~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~---~~-~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
...|++++|+|. ...+|.|.++|+|-+||+...... .+ .....|..+|+.+.|.....+.-++++|.||.|+.|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 467999999875 578888889999999999654332 11 1234589999999997654445689999999999998
Q ss_pred cCCCCc---eeEEEEec------CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee------eeecccCCC
Q 022111 86 EGNQND---WTQAHTFN------DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT------TRIDQAHPV 150 (302)
Q Consensus 86 ~~~~~~---~~~~~~~~------~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~------~~~~~~h~~ 150 (302)
++.-.. ..+..... .-...++++.|.|.. ...++.|+.+|.|.--... +..... ......|..
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~-g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRK-GYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEecc-CCcccccccccccccccccCc
Confidence 754221 00111111 123467899998764 3579999999988652211 111111 111235778
Q ss_pred CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111 151 GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 151 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 230 (302)
+|.++.++|... ++|.|++ |-+++||...... ..+..+..+...|++++|||.. +..|++
T Consensus 400 ~v~~v~~nPF~~-------------k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptr---pavF~~ 459 (555)
T KOG1587|consen 400 PVYAVSRNPFYP-------------KNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTR---PAVFAT 459 (555)
T ss_pred ceEeeecCCCcc-------------ceeeeec-cceeEeccccCCC---CcchhhhhccceeeeeEEcCcC---ceEEEE
Confidence 899999999752 5666776 9999999976221 2233455677889999999974 689999
Q ss_pred EecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 231 ASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
+..||.|.|||+......-......+ ......+.|+++|+.|++|+.. ++++|+..
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 99999999999975432111111112 3345678899999999999888 69999974
No 153
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=8.4e-18 Score=149.65 Aligned_cols=239 Identities=22% Similarity=0.320 Sum_probs=166.9
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
-|+.++|.|||..|+.+. +..+.+||...+ ..+.++++|++.|++++|+++ |+++|||+.|+.+.+|...-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~klEG-- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKLEG-- 86 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccC--CceeccCCCceeEEEecccccc--
Confidence 789999999998887654 567899998653 467889999999999999864 9999999999999999753211
Q ss_pred eEEEEecCCCC---------------------------------------CeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111 93 TQAHTFNDHKS---------------------------------------SVNSIAWAPHELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 93 ~~~~~~~~h~~---------------------------------------~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~ 133 (302)
+-.+ .|++ ++.+++|..| |++++-|-.+|+|.+-.-
T Consensus 87 --~LkY-SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnD--GqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 87 --ILKY-SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTND--GQYLALGMFNGTISIRNK 161 (1081)
T ss_pred --eeee-ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCC--CcEEEEeccCceEEeecC
Confidence 0111 1333 4455555555 778888888888888532
Q ss_pred cCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111 134 TADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR 213 (302)
Q Consensus 134 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 213 (302)
.......+.+ ..+...+|.+++|+|+..++. ...++..--..++.++.+....- ..-+.+ .-.-.
T Consensus 162 ~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~---------~di~aV~DW~qTLSFy~LsG~~I--gk~r~L---~FdP~ 226 (1081)
T KOG1538|consen 162 NGEEKVKIER-PGGSNSPIWSICWNPSSGEGR---------NDILAVADWGQTLSFYQLSGKQI--GKDRAL---NFDPC 226 (1081)
T ss_pred CCCcceEEeC-CCCCCCCceEEEecCCCCCCc---------cceEEEEeccceeEEEEecceee--cccccC---CCCch
Confidence 2111111111 224567899999999865543 24677777778888888764210 000111 11135
Q ss_pred EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
|+++.|+| .+++.|+.|+.+++|..+. ...+ .+.++..+||+++..|++..+++|..| +|--|..
T Consensus 227 CisYf~NG----Ey~LiGGsdk~L~~fTR~G---vrLG-Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 227 CISYFTNG----EYILLGGSDKQLSLFTRDG---VRLG-TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred hheeccCC----cEEEEccCCCceEEEeecC---eEEe-eccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 89999986 7899999999999996542 2222 235677899999999999999999998 5655543
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=1.9e-17 Score=143.00 Aligned_cols=253 Identities=17% Similarity=0.286 Sum_probs=169.2
Q ss_pred ccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCc-eEEEEecCcc-cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 11 EDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSAS-QHLATLKGHR-GPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 11 ~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~-~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
.+.|..+.|+|.. ..++++| -+-+.-|++..... +....+..++ ..|.+++|.++ |+ ++||..+|.|.||+..
T Consensus 200 ne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~en--gd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLEN--GD-VITGDSGGNILIWSKG 275 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcCC--CC-EEeecCCceEEEEeCC
Confidence 3467778899966 5666666 45688998865442 2233444443 55899999753 44 6799999999999975
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC--------
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP-------- 159 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------- 159 (302)
... ..++...|++-|.++..-.+ |. |++|+.|+.|..||-.-. .....++. .....++.++=..
T Consensus 276 ~~~---~~k~~~aH~ggv~~L~~lr~--Gt-llSGgKDRki~~Wd~~y~-k~r~~elP-e~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 276 TNR---ISKQVHAHDGGVFSLCMLRD--GT-LLSGGKDRKIILWDDNYR-KLRETELP-EQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred Cce---EEeEeeecCCceEEEEEecC--cc-EeecCccceEEecccccc-ccccccCc-hhcCCeeEEecCCCcEEEeec
Confidence 532 22233379999999998776 65 666999999999983211 11111111 0111222221000
Q ss_pred -----------------CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111 160 -----------------AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG 222 (302)
Q Consensus 160 -----------------~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 222 (302)
.++...++++...+...+++||+.|+.++||+-....|.. .-.+++.|++|+|.+
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~-------~~~d~~~~~~fhpsg- 419 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTK-------IIEDPAECADFHPSG- 419 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEE-------EecCceeEeeccCcc-
Confidence 0011122333344456789999999999999933322321 135668999999983
Q ss_pred CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
.+|.|+..|...+.|+.... ...+..+ .+++..++|||+|.+||+|++| .|+||....+|+
T Consensus 420 ----~va~Gt~~G~w~V~d~e~~~---lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 420 ----VVAVGTATGRWFVLDTETQD---LVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred ----eEEEeeccceEEEEecccce---eEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 79999999999998886521 2233345 7899999999999999999999 699999988887
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.1e-17 Score=147.17 Aligned_cols=262 Identities=20% Similarity=0.301 Sum_probs=177.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++.||++.|.+|+.+|.|.+||+|+.||+||||.+.+ +.++.++. -.+.|.+|+|+|..+-.+||.+-.+ .+.|-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T--gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT--GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec--ceEEEEEe-ecceeEEEEecCCCCceeEEEEecC-ceEEeC
Confidence 4679999999999999999999999999999999976 45565543 2347999999875433345444333 344443
Q ss_pred cCCCC-------------------------cee---------EE-EEecCCCCCeeEEEecCCCCCcEEEEEecC---Cc
Q 022111 86 EGNQN-------------------------DWT---------QA-HTFNDHKSSVNSIAWAPHELGLSLACGSSD---GN 127 (302)
Q Consensus 86 ~~~~~-------------------------~~~---------~~-~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d---~~ 127 (302)
..-+. .|. .+ .++ -|...|+.+.|+.. |.+|++...+ ..
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWHrk--GDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWHRK--GDYLATVMPDSGNKS 547 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeeecC--CceEEEeccCCCcce
Confidence 21100 010 00 122 27789999999976 7788887654 57
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC-------------------------Cc--eeecccCCCceeEEE
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP-------------------------GA--LVGLGLLDPVQKLAS 180 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------------------------~~--~~~~~~~~~~~~l~s 180 (302)
|.|+++....... .+. .....+.++.|.|.... +. +-.+...+.|..|+.
T Consensus 548 VliHQLSK~~sQ~--PF~-kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 548 VLIHQLSKRKSQS--PFR-KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred EEEEecccccccC--chh-hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 8888886543222 221 11234667777775421 00 001223356889999
Q ss_pred eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc------eeeeee
Q 022111 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ------WEGRVL 254 (302)
Q Consensus 181 ~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~------~~~~~~ 254 (302)
++.|+.+..+|+.-.. +.++++.-|...|++|+|++.. ..+++|+.|+++.||.-.--... -....+
T Consensus 625 gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ry----PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L 697 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRY----PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL 697 (733)
T ss_pred ecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhcccc----ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec
Confidence 9999999999986442 3456778899999999999975 67999999999999964321111 111233
Q ss_pred ccCCC----cEEEEEEccCCCEEEEecCC-ceEEe
Q 022111 255 KDFKT----PVWSVSWSLTGNLLAVADAN-NVTLW 284 (302)
Q Consensus 255 ~~~~~----~v~~~~~spdg~~la~~~~d-~i~~w 284 (302)
.+|.. .|..+.|+|..-.|-+|+.| .|++|
T Consensus 698 ~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 698 RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 45543 38888999999999888888 79998
No 156
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=7.8e-19 Score=151.31 Aligned_cols=220 Identities=18% Similarity=0.242 Sum_probs=169.9
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH 96 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 96 (302)
++......++++||..+.|+|||+.. ..+...+++|...|+++.|+.. ..+||+++..|-|.|-...++... .
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~~~t---t 157 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTKQKT---T 157 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHH--HHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccCccc---c
Confidence 33334458999999999999999974 2356778999999999999754 579999999999999988765432 2
Q ss_pred EecCC-CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111 97 TFNDH-KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175 (302)
Q Consensus 97 ~~~~h-~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
+|... ...|+-+.|+|... .+|.+++++|.|.+||+.... ........|..+...++|+|.. .
T Consensus 158 ~f~~~sgqsvRll~ys~skr-~lL~~asd~G~VtlwDv~g~s--p~~~~~~~HsAP~~gicfspsn-------------e 221 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKR-FLLSIASDKGAVTLWDVQGMS--PIFHASEAHSAPCRGICFSPSN-------------E 221 (673)
T ss_pred ceecCCCCeEEEeecccccc-eeeEeeccCCeEEEEeccCCC--cccchhhhccCCcCcceecCCc-------------c
Confidence 34433 45667899998743 478999999999999986443 3344455899999999999964 4
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
.+|++.|.|+.|.+||...... .+++ .-..+...|+|+|+| .+|+.|+..|.|..||++..+.+ ..+..
T Consensus 222 ~l~vsVG~Dkki~~yD~~s~~s-~~~l----~y~~Plstvaf~~~G----~~L~aG~s~G~~i~YD~R~~k~P--v~v~s 290 (673)
T KOG4378|consen 222 ALLVSVGYDKKINIYDIRSQAS-TDRL----TYSHPLSTVAFSECG----TYLCAGNSKGELIAYDMRSTKAP--VAVRS 290 (673)
T ss_pred ceEEEecccceEEEeecccccc-ccee----eecCCcceeeecCCc----eEEEeecCCceEEEEecccCCCC--ceEee
Confidence 7899999999999999975421 1221 124557899999995 88999999999999999987654 34456
Q ss_pred cCCCcEEEEEEccCC
Q 022111 256 DFKTPVWSVSWSLTG 270 (302)
Q Consensus 256 ~~~~~v~~~~~spdg 270 (302)
.|...|.+++|-|.-
T Consensus 291 ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 291 AHDASVTRVAFQPSP 305 (673)
T ss_pred ecccceeEEEeeecc
Confidence 777889999997754
No 157
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=151.81 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=157.4
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK 102 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 102 (302)
+..|+.++.||.+.|.+-. ++.-.+..+|.+.|.+-+|+++ |.-|+|+++||.|++|.-... ...++....
T Consensus 75 ~d~~~i~s~DGkf~il~k~---~rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsGM----LRStl~Q~~ 145 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKS---ARVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSGM----LRSTVVQNE 145 (737)
T ss_pred cceEEEEcCCceEEEeccc---chhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEeccch----HHHHHhhcC
Confidence 3678888999999987643 3344567899999999999874 888999999999999974332 223444467
Q ss_pred CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111 103 SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 182 (302)
.+|+|++|.|+.+ ..+.+. .+++.+=.+.... .+.+.+ +|..-|.++.|+|.. ..++|||
T Consensus 146 ~~v~c~~W~p~S~-~vl~c~--g~h~~IKpL~~n~--k~i~Wk-AHDGiiL~~~W~~~s--------------~lI~sgG 205 (737)
T KOG1524|consen 146 ESIRCARWAPNSN-SIVFCQ--GGHISIKPLAANS--KIIRWR-AHDGLVLSLSWSTQS--------------NIIASGG 205 (737)
T ss_pred ceeEEEEECCCCC-ceEEec--CCeEEEeeccccc--ceeEEe-ccCcEEEEeecCccc--------------cceeecC
Confidence 8999999999853 344443 3566664433221 223333 888999999999863 7899999
Q ss_pred CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE
Q 022111 183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW 262 (302)
Q Consensus 183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~ 262 (302)
+|-..+|||.... .+..-..|+.+|++++|+|+. .++.+|.. ++|+ .+...+.|.
T Consensus 206 ED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd~-----~~~v~S~n-t~R~--------------~~p~~GSif 260 (737)
T KOG1524|consen 206 EDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPEK-----DYLLWSYN-TARF--------------SSPRVGSIF 260 (737)
T ss_pred CceeEEeecccCc-----ccccCChhccceeeeeecccc-----ceeeeeee-eeee--------------cCCCccceE
Confidence 9999999998653 344556799999999999983 45555543 3331 122345699
Q ss_pred EEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111 263 SVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293 (302)
Q Consensus 263 ~~~~spdg~~la~~~~d~i~~w~~~~~~~~~ 293 (302)
.++|||||.++++|.+.+..+.-...+.+|+
T Consensus 261 nlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~ 291 (737)
T KOG1524|consen 261 NLSWSADGTQATCGTSTGQLIVAYAIEQQLV 291 (737)
T ss_pred EEEEcCCCceeeccccCceEEEeeeehhhhh
Confidence 9999999999999988877776665555543
No 158
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.4e-18 Score=146.26 Aligned_cols=209 Identities=17% Similarity=0.201 Sum_probs=154.2
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeec-------CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLS-------NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~-------~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
+.+|-..|+++.|+-|+.+|.|||.||.|.+|.+. ....+++..+.+|.-+|+++...+-.-..+|+|+|.|+
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 56899999999999999999999999999999872 12345678899999999998875422245899999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe--------------eeeeec
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW--------------DTTRID 145 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~--------------~~~~~~ 145 (302)
++|+||+..+. .+.++. -.-.|.+++..|- ...+..|+.+|.|.+.++...... ....+
T Consensus 199 t~k~wdlS~g~---LLlti~-fp~si~av~lDpa--e~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~- 271 (476)
T KOG0646|consen 199 TIKLWDLSLGV---LLLTIT-FPSSIKAVALDPA--ERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL- 271 (476)
T ss_pred eEEEEEeccce---eeEEEe-cCCcceeEEEccc--ccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee-
Confidence 99999997763 344443 4567899999987 458999999999988766432110 11112
Q ss_pred ccCCC--CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC
Q 022111 146 QAHPV--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223 (302)
Q Consensus 146 ~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 223 (302)
.+|.. .|+|++.+.+ +.+|+||+.||.|+|||+.+. .+++++....++|+-+.+.|-.
T Consensus 272 ~Gh~~~~~ITcLais~D--------------gtlLlSGd~dg~VcvWdi~S~----Q~iRtl~~~kgpVtnL~i~~~~-- 331 (476)
T KOG0646|consen 272 VGHENESAITCLAISTD--------------GTLLLSGDEDGKVCVWDIYSK----QCIRTLQTSKGPVTNLQINPLE-- 331 (476)
T ss_pred ccccCCcceeEEEEecC--------------ccEEEeeCCCCCEEEEecchH----HHHHHHhhhccccceeEeeccc--
Confidence 25666 7888888765 489999999999999999876 4666666678889999997642
Q ss_pred CccEEEEEecCCeEEEEEec
Q 022111 224 PKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 224 ~~~~l~s~s~D~~i~iwd~~ 243 (302)
+..+..-.....+-.|++.
T Consensus 332 -~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 332 -RGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred -cceecccccCccCCchHhh
Confidence 1233333333345555543
No 159
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.8e-17 Score=144.92 Aligned_cols=244 Identities=21% Similarity=0.293 Sum_probs=169.2
Q ss_pred ccccc-cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHE-DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..|++ ..|.+++|.+ +..|.|.+.+|+|.=||+.. .+++..+..-.+.|++++.++. ++.++.|+.||.+.+.+
T Consensus 64 i~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~--lk~~~~~d~~gg~IWsiai~p~--~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHT--LKQKYNIDSNGGAIWSIAINPE--NTILAIGCDDGVLYDFS 138 (691)
T ss_pred EecCCCCceeeEEEcc-CCeEEeecCCceEEEEeccc--CceeEEecCCCcceeEEEeCCc--cceEEeecCCceEEEEe
Confidence 34554 4899999995 55788899999999999965 4556666667788999998753 68899999999766666
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCCCC
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 164 (302)
.... ..+....|.-.+++|.+++|+|+ +..+++|+.|+.|++||.............. .-...-.++.|+-
T Consensus 139 ~~p~-~I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv----- 210 (691)
T KOG2048|consen 139 IGPD-KITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV----- 210 (691)
T ss_pred cCCc-eEEEEeecccccceEEEEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE-----
Confidence 5432 22233345556799999999998 6689999999999999987654333111100 0011112344432
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.+..+ ..||+|-.-|+|++||...+ +.++.+..|..-|.|++-++++ +.+++++.|+.|.-+....
T Consensus 211 -----~~Lrd-~tI~sgDS~G~V~FWd~~~g----TLiqS~~~h~adVl~Lav~~~~----d~vfsaGvd~~ii~~~~~~ 276 (691)
T KOG2048|consen 211 -----LFLRD-STIASGDSAGTVTFWDSIFG----TLIQSHSCHDADVLALAVADNE----DRVFSAGVDPKIIQYSLTT 276 (691)
T ss_pred -----EEeec-CcEEEecCCceEEEEcccCc----chhhhhhhhhcceeEEEEcCCC----CeEEEccCCCceEEEEecC
Confidence 11111 47999999999999998876 5667788899999999999884 7899999999988887665
Q ss_pred CCcceeeeee-ccCCCcEEEEEEccCCCEEEEecCC
Q 022111 245 EGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 245 ~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d 279 (302)
.+..|..... ..|...+.+++..++ .|.+|+.|
T Consensus 277 ~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 277 NKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRD 310 (691)
T ss_pred CccceeeeccccCCcccceeeeeecc--eEEeccee
Confidence 5443432211 234445666666554 55555555
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.2e-19 Score=168.04 Aligned_cols=211 Identities=25% Similarity=0.448 Sum_probs=161.6
Q ss_pred cccccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 6 IETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
.+..|++.|..+.|++... .||+|+.||+|.|||+.... .+ .+. ..-...|.+++|+. +..++||+++.++.+.
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP-~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TP-FTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAV 187 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CC-CCCCCCCCcccceEeccch-hhhHHhhccCCCCCce
Confidence 3567999999999998764 99999999999999996522 11 111 12356799999975 4567999999999999
Q ss_pred EEEcCCCCceeEEEEecCCC--CCeeEEEecCCCCCcEEEEEecCC---cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 83 IWKEGNQNDWTQAHTFNDHK--SSVNSIAWAPHELGLSLACGSSDG---NISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~--~~i~~l~~~pd~~~~~l~sg~~d~---~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
|||++... ++-.+..+. ..+..++|+|+. ...+++++.|. .|.+||++-... . ....++|..+|.++.|
T Consensus 188 iWDlr~~~---pii~ls~~~~~~~~S~l~WhP~~-aTql~~As~dd~~PviqlWDlR~ass-P-~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 188 IWDLRKKK---PIIKLSDTPGRMHCSVLAWHPDH-ATQLLVASGDDSAPVIQLWDLRFASS-P-LKILEGHQRGILSLSW 261 (1049)
T ss_pred eccccCCC---cccccccCCCccceeeeeeCCCC-ceeeeeecCCCCCceeEeecccccCC-c-hhhhcccccceeeecc
Confidence 99998753 333344343 346799999996 34566666554 788999874321 1 1222489999999999
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i 237 (302)
++.. ..+|+||+.|+.|.+|+..++ +.+..+-...+|+.++.|+|.. +..|+..+.||.|
T Consensus 262 c~~D-------------~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~nW~fdv~w~pr~---P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 262 CPQD-------------PRLLLSSGKDNRIICWNPNTG----EVLGELPAQGNWCFDVQWCPRN---PSVMAAASFDGKI 321 (1049)
T ss_pred CCCC-------------chhhhcccCCCCeeEecCCCc----eEeeecCCCCcceeeeeecCCC---cchhhhheeccce
Confidence 9864 478999999999999999886 4455666678999999999974 6789999999999
Q ss_pred EEEEeccC
Q 022111 238 VIWTCAKE 245 (302)
Q Consensus 238 ~iwd~~~~ 245 (302)
.|+.+...
T Consensus 322 ~I~sl~~~ 329 (1049)
T KOG0307|consen 322 SIYSLQGT 329 (1049)
T ss_pred eeeeeecC
Confidence 99998764
No 161
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1.7e-17 Score=136.13 Aligned_cols=213 Identities=23% Similarity=0.362 Sum_probs=166.1
Q ss_pred ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
..+|++.+|+.+ .+.+|.+-....+.||.......|+..+++..|...|+.++|+|. ...|++|+.|++-++|...
T Consensus 10 ~~pitchAwn~d--rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSD--RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCC--CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCC--CCceeEccCCCCccccccC
Confidence 467999999854 788999999999999998877778999999999999999999997 4589999999999999987
Q ss_pred CCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCcee
Q 022111 135 ADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVR 213 (302)
Q Consensus 135 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~ 213 (302)
+++.|........+...++++.|+|.. ..||+||.-+.|.||-.... .|=+ ..+.-+.+++.|.
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~e--------------nkFAVgSgar~isVcy~E~ENdWWV-sKhikkPirStv~ 150 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKE--------------NKFAVGSGARLISVCYYEQENDWWV-SKHIKKPIRSTVT 150 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcC--------------ceEEeccCccEEEEEEEecccceeh-hhhhCCcccccee
Confidence 777787654444678889999999964 78999999999999887543 2211 1112245788899
Q ss_pred EEEeeCCCCCCccEEEEEecCCeEEEEEecc-----CC--cceeee-----eeccC---CCcEEEEEEccCCCEEEEecC
Q 022111 214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAK-----EG--EQWEGR-----VLKDF---KTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~-----~~--~~~~~~-----~~~~~---~~~v~~~~~spdg~~la~~~~ 278 (302)
+++|+|+. -.+++||.|+.+|+|..-- .. .+|-.+ +..++ .+.+..+.|+|+|+.|+-.++
T Consensus 151 sldWhpnn----VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 151 SLDWHPNN----VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeccCCc----ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 99999985 6799999999999997421 11 122111 12222 356889999999999999999
Q ss_pred C-ceEEeeecCCc
Q 022111 279 N-NVTLWKEAVDG 290 (302)
Q Consensus 279 d-~i~~w~~~~~~ 290 (302)
| .+.+=|...+.
T Consensus 227 ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 227 DSTVSFVDAAGPS 239 (361)
T ss_pred CCceEEeecCCCc
Confidence 9 68887765544
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=1.4e-17 Score=147.36 Aligned_cols=258 Identities=19% Similarity=0.286 Sum_probs=161.9
Q ss_pred EEEcc---CCCEEEEeeCCCcEEEEeecCCCce----EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 17 VAMDF---YGKRLATASSDSSIKIIGLSNSASQ----HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 17 ~~~s~---~~~~l~s~~~d~~v~lw~~~~~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
..|++ ....||.+-.||.|.|+|......+ .+.....|...|..+.|.+- ..+|++++.|.++++||++..
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC--ceeEEEccCCceeeeeeeccc
Confidence 45553 2468889999999999997543211 23445689999999999752 457999999999999999765
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee----eeecccCCCC---eEEE-----Ee
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT----TRIDQAHPVG---VTSV-----SW 157 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~----~~~~~~h~~~---v~~~-----~~ 157 (302)
. ......+.+|...|.+++|.|++ ...+++|+.|+.|.|||.+..+.-.+ ..+...|... ..-+ .|
T Consensus 133 ~-l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 133 R-LVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred e-eecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 3 12233478899999999999985 46799999999999999985431000 1111112110 0000 00
Q ss_pred CCCCCCCce---eecccCCCceeEEEeeC-CCcEEEEEEecCcccccc--ccc--cccC---CCceeEEEeeCCCCCCcc
Q 022111 158 APAMAPGAL---VGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDC--FPA--LQMH---SDWVRSVAWAPNLGLPKS 226 (302)
Q Consensus 158 ~~~~~~~~~---~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~--~~~--~~~h---~~~v~~v~~~p~~~~~~~ 226 (302)
- ...+.+ +...++.+...|||+|. |+.|+|||++........ ... +--| .-.+.++..... |.
T Consensus 211 k--A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss----Gt 284 (720)
T KOG0321|consen 211 K--AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS----GT 284 (720)
T ss_pred c--cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC----CC
Confidence 0 000111 11223345578999888 999999999876432111 111 1112 123444444333 46
Q ss_pred EEEEEecCCeEEEEEeccCCcceeeeeeccCCC----cEE-EEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 227 TIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT----PVW-SVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 227 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~----~v~-~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+|.+.+.|++|..|++...... ....|.+ .++ .-..|||+.+|++|+.| ...+|.+..
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~s----P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~ 348 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSIS----PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS 348 (720)
T ss_pred eEEEEecCCcEEEEeccccCcC----chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence 6666666999999999864311 1122222 111 23468999999999999 799999753
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.6e-17 Score=135.24 Aligned_cols=252 Identities=16% Similarity=0.258 Sum_probs=168.2
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEeec-----CCCceE-----EEEecC-cccCeEEEEeeC-----CCCCCEEEEEeC
Q 022111 14 VHDVAMDFYGKRLATASSDSSIKIIGLS-----NSASQH-----LATLKG-HRGPVWQVAWAH-----PKFGSILASCSY 77 (302)
Q Consensus 14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~-----~~~~~~-----~~~~~~-h~~~v~~v~~~~-----~~~~~~l~s~s~ 77 (302)
..++.|+|||..|++-+.|..+++|++- .+...+ ..+++= -...|+.-+|-+ +.+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568899999999999999999999972 110000 011110 123466666642 113468888899
Q ss_pred CCeEEEEEcCCCCceeEEEEecCCCCCe---eEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeee-ee---cccCC
Q 022111 78 DGQVIIWKEGNQNDWTQAHTFNDHKSSV---NSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTT-RI---DQAHP 149 (302)
Q Consensus 78 D~~i~iwd~~~~~~~~~~~~~~~h~~~i---~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~-~~---~~~h~ 149 (302)
|.-|++||.-++.....-..+ .|.+.+ -+++|+|| |.+|.+ +..+.|++||....+. .... .+ +.+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~D--Geqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPD--GEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cCceeeeeccccccccchhhh-hhHHhhhhheeEEecCC--CCeEee-cccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999998766421111122 255544 48999999 666665 5788999999843332 2211 11 11224
Q ss_pred CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111 150 VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229 (302)
Q Consensus 150 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 229 (302)
.-+.+++++|.. .+.++.++....+-||.-... ..+..+.+|.+.|+.++|+|+| +.|.
T Consensus 208 giisc~a~sP~~-------------~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edG----n~lf 266 (406)
T KOG2919|consen 208 GIISCFAFSPMD-------------SKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDG----NKLF 266 (406)
T ss_pred ceeeeeeccCCC-------------CcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCc----Ceec
Confidence 457888999864 468899999988888876543 3456678999999999999996 6777
Q ss_pred EEec-CCeEEEEEeccCCcceeeeeeccCCC----cEEEEEEccCCCEEEEecCC-ceEEeeecCCceEE
Q 022111 230 SASQ-DGTVVIWTCAKEGEQWEGRVLKDFKT----PVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQ 293 (302)
Q Consensus 230 s~s~-D~~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~ 293 (302)
+|+. |-.|-.||+|....+. -.+..+.+ .| -....|+|++||+|+-+ .|++||...-|.|.
T Consensus 267 sGaRk~dkIl~WDiR~~~~pv--~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~ 333 (406)
T KOG2919|consen 267 SGARKDDKILCWDIRYSRDPV--YALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKDLGNEV 333 (406)
T ss_pred ccccCCCeEEEEeehhccchh--hhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence 8774 7889999998653321 11122222 22 24556899999999888 69999998766644
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=2.8e-18 Score=149.90 Aligned_cols=225 Identities=24% Similarity=0.316 Sum_probs=161.0
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeec------CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLS------NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~------~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
+.-|.+-|+.+.|.+-...|++++.|+++++|++. ....+++.+|.+|.++|.|++++. .+..+.+|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~--n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS--NGEHCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC--CceEEEeeccCce
Confidence 44688889999999988899999999999999992 122467889999999999999965 3889999999999
Q ss_pred EEEEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC--
Q 022111 81 VIIWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG-- 151 (302)
Q Consensus 81 i~iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~-- 151 (302)
|+.|++..+. .......+.||.+.|..+++++. ..+|++++.||++++|........ +....+.|..+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~DgTvr~w~~~~~~~~-~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSSDGTVRLWEPTEESPC-TFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecCCceEEeeccCCcCcc-ccCCccccCCcce
Confidence 9999654211 11234567899999999999976 347999999999999976533220 01111111111
Q ss_pred eEEEEeCCCC----------------------------CCCc----eee-cccCCCceeEEEeeCCCcEEEEEEecCccc
Q 022111 152 VTSVSWAPAM----------------------------APGA----LVG-LGLLDPVQKLASCGCDNTVKVWKMYNGIWK 198 (302)
Q Consensus 152 v~~~~~~~~~----------------------------~~~~----~~~-~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~ 198 (302)
+....|-|.. .++. ... +..-+...+.+++..|+.|+++|..++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~--- 521 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG--- 521 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc---
Confidence 1111111100 0000 000 001123467899999999999998876
Q ss_pred cccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 199 MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 199 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..+.....|...+.++++.|++ -+|++++.|+.+++|.+..
T Consensus 522 -~~l~s~~a~~~svtslai~~ng----~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 522 -KILHSMVAHKDSVTSLAIDPNG----PYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred -ccchheeeccceecceeecCCC----ceEEeecCCceeehhhccc
Confidence 4566677899999999999996 7899999999999998754
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1e-17 Score=140.77 Aligned_cols=222 Identities=18% Similarity=0.254 Sum_probs=158.7
Q ss_pred EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125 (302)
Q Consensus 50 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d 125 (302)
.+.||.++|..+.|+|- +...|||||+|.+|+||.+..+. ...++..+.+|..+|.-++|+|... ..|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~D 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSD 153 (472)
T ss_pred CccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCC
Confidence 45799999999999864 46899999999999999986542 2345678899999999999999863 579999999
Q ss_pred CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc
Q 022111 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL 205 (302)
Q Consensus 126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~ 205 (302)
++|.+|++.++. .+..+ .|+..|.++.|+.+ |.+|+|.+.|+.|||||.+++. .+..-
T Consensus 154 n~v~iWnv~tge--ali~l--~hpd~i~S~sfn~d--------------Gs~l~TtckDKkvRv~dpr~~~----~v~e~ 211 (472)
T KOG0303|consen 154 NTVSIWNVGTGE--ALITL--DHPDMVYSMSFNRD--------------GSLLCTTCKDKKVRVIDPRRGT----VVSEG 211 (472)
T ss_pred ceEEEEeccCCc--eeeec--CCCCeEEEEEeccC--------------CceeeeecccceeEEEcCCCCc----Eeeec
Confidence 999999997653 22333 49999999999876 4799999999999999999873 33333
Q ss_pred ccCCCc-eeEEEeeCCCCCCccEEEEEe----cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEE-EEecCC
Q 022111 206 QMHSDW-VRSVAWAPNLGLPKSTIASAS----QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLL-AVADAN 279 (302)
Q Consensus 206 ~~h~~~-v~~v~~~p~~~~~~~~l~s~s----~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~~~d 279 (302)
.+|.+. -..+-|-.++ . |+|.+ .++.+-+||......+..... .+-++.|.==-|.||.++| ++|-+|
T Consensus 212 ~~heG~k~~Raifl~~g----~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~e-lDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 212 VAHEGAKPARAIFLASG----K-IFTTGFSRMSERQIALWDPNNLEEPIALQE-LDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ccccCCCcceeEEeccC----c-eeeeccccccccceeccCcccccCcceeEE-eccCCceEEeeecCCCCEEEEEecCC
Confidence 456543 2234455453 4 44443 467899998765332211111 1223445434467777766 556566
Q ss_pred -ceEEeeecCCce----EEEeeecCCC
Q 022111 280 -NVTLWKEAVDGE----WQQVSVVEPQ 301 (302)
Q Consensus 280 -~i~~w~~~~~~~----~~~~~~~~~~ 301 (302)
+|+.|....+.+ +..+...|||
T Consensus 286 ~~IRYyEit~d~P~~hyln~f~S~epQ 312 (472)
T KOG0303|consen 286 SSIRYFEITNEPPFVHYLNTFSSKEPQ 312 (472)
T ss_pred cceEEEEecCCCceeEEecccccCCcc
Confidence 799999876664 5666777777
No 166
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=8.7e-19 Score=159.13 Aligned_cols=257 Identities=21% Similarity=0.314 Sum_probs=176.5
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
+.||..+|+|+.|+..|+++.+|++|..|+||..++ ..++.++.||++.|+.++.+.. ..++|++|.|..|++|.+
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccCCCCccccchhccchh--hhhhhhcccCceEEEEec
Confidence 559999999999999999999999999999999644 5678899999999999998643 568999999999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec-CCCCeeeeeecccCCCCeEEEEeCCCCC---
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT-ADGGWDTTRIDQAHPVGVTSVSWAPAMA--- 162 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~--- 162 (302)
.++ .++..+.+|++.|++++|+|-. +.+.||++++||.+ ......+..........+.++.+.....
T Consensus 262 ~~~---~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 262 PDG---APVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred CCC---chHHHHhccccceeeeccCccc------cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 876 3677889999999999999952 66889999999976 1100000011000011222222211100
Q ss_pred ----CC--c-------------e-eecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111 163 ----PG--A-------------L-VGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG 222 (302)
Q Consensus 163 ----~~--~-------------~-~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 222 (302)
.+ . + +.....+-+...+++=.+-.+++|++.++ ...+.+.+|.+.+.-+.++|-.
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~Hpfn- 407 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVHPFN- 407 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeecCCC-
Confidence 00 0 0 00000011123333434556777888766 3457788999999999999963
Q ss_pred CCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 223 LPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 223 ~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
+....+++.||...|||+-..-.. +... .+ ...+...+||+||.-++...+- .+.|...
T Consensus 408 --~ri~msag~dgst~iwdi~eg~pi-k~y~-~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 408 --PRIAMSAGYDGSTIIWDIWEGIPI-KHYF-IG-HGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred --cHhhhhccCCCceEeeecccCCcc-eeee-cc-cceeeccccCCCCceEecCCCCCceEEecc
Confidence 577889999999999998543211 1111 22 4567788999999888777544 4777654
No 167
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=2.5e-17 Score=135.51 Aligned_cols=260 Identities=20% Similarity=0.390 Sum_probs=185.6
Q ss_pred cccccccceeEEEEccC-----CCEEEEeeCCCcEEEEeecCCCce-EEEEe--cCcccCeEEEEeeCCCC--CCEEEEE
Q 022111 6 IETGHEDTVHDVAMDFY-----GKRLATASSDSSIKIIGLSNSASQ-HLATL--KGHRGPVWQVAWAHPKF--GSILASC 75 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~-----~~~l~s~~~d~~v~lw~~~~~~~~-~~~~~--~~h~~~v~~v~~~~~~~--~~~l~s~ 75 (302)
+...|..++..+.|.+. ...+|+.|. ..+.+|........ .++.. ..|....+.++|+-+.. ..+||.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 45688899999999853 256777664 46788887543222 22222 23677778888865432 4578899
Q ss_pred eCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111 76 SYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV 155 (302)
Q Consensus 76 s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~ 155 (302)
+.-|.|+|.|+..+ .....+.+|...|+.+.++|+. .++++++|.|..|++|++++.......--..+|...|.++
T Consensus 112 G~~GvIrVid~~~~---~~~~~~~ghG~sINeik~~p~~-~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv 187 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSG---QCSKNYRGHGGSINEIKFHPDR-PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV 187 (385)
T ss_pred cceeEEEEEecchh---hhccceeccCccchhhhcCCCC-CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence 99999999998765 3567788999999999999985 4689999999999999998775544433334899999999
Q ss_pred EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--------------cc-------cccc---ccccCCCc
Q 022111 156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--------------KM-------DCFP---ALQMHSDW 211 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--------------~~-------~~~~---~~~~h~~~ 211 (302)
.|++++ .+|+|||.|-.+++|++..... .. ..++ +-..|..+
T Consensus 188 D~~~~g--------------d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrny 253 (385)
T KOG1034|consen 188 DFSLDG--------------DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNY 253 (385)
T ss_pred EEcCCC--------------CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccch
Confidence 999864 7999999999999999973210 00 1111 23468889
Q ss_pred eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce--------eeeeeccC---CCcEEEEEEc--cCCCEEEEecC
Q 022111 212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW--------EGRVLKDF---KTPVWSVSWS--LTGNLLAVADA 278 (302)
Q Consensus 212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~--------~~~~~~~~---~~~v~~~~~s--pdg~~la~~~~ 278 (302)
|-|+.|- +++++|=|-++.|..|..-+..+.+ ....+.++ ...||-+.|+ |-++.||.|..
T Consensus 254 VDCvrw~------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 254 VDCVRWF------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHHH------hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 9999885 4679999999999999873211110 11122222 2457777655 56799999987
Q ss_pred C-ceEEeeecCCc
Q 022111 279 N-NVTLWKEAVDG 290 (302)
Q Consensus 279 d-~i~~w~~~~~~ 290 (302)
. ++.+|+..-+.
T Consensus 328 ~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 328 SGKVYVWDLDNNE 340 (385)
T ss_pred CCcEEEEECCCCC
Confidence 7 79999985433
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.6e-15 Score=134.80 Aligned_cols=253 Identities=31% Similarity=0.496 Sum_probs=184.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc-cCeEEEEeeCCCCCC-EEEEEeC-CCeEE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR-GPVWQVAWAHPKFGS-ILASCSY-DGQVI 82 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~-~l~s~s~-D~~i~ 82 (302)
....|...+..+.+.+.+..++.++.|+.+.+|+..... ..+..+.++. ..+..+.+. ..++. +++..+. |+.++
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence 345899999999999999999999999999999986543 2445555533 367677763 22345 5555455 99999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
+|+.... ......+..|...|..+.|+|+ +..++.++. |+.+++|+...... ...+ ..|...+.++.|+|.+
T Consensus 138 ~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 138 LWDLSTP--GKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKP--LSTL-AGHTDPVSSLAFSPDG 210 (466)
T ss_pred EEEecCC--CeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCce--EEee-ccCCCceEEEEEcCCc
Confidence 9998751 1355677789999999999998 447777775 99999999875222 2222 2588899999999753
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc-ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP-ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw 240 (302)
...+++++.|+.+++||...+ .... .+.+|...+ -..|+|++ ..+++++.|+.+++|
T Consensus 211 -------------~~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~~~ 268 (466)
T COG2319 211 -------------GLLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDG----SLLASGSSDGTIRLW 268 (466)
T ss_pred -------------ceEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCC----CEEEEecCCCcEEEe
Confidence 125566699999999987643 2333 577787775 33899985 678899999999999
Q ss_pred EeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 241 TCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 241 d~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
+.+.... . ......+...+.++.|+|++..+++++.+ .+.+|+......
T Consensus 269 ~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 318 (466)
T COG2319 269 DLRSSSS-L-LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKL 318 (466)
T ss_pred eecCCCc-E-EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCce
Confidence 9986533 1 11224557789999999988888887777 689997654443
No 169
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=4.7e-16 Score=141.58 Aligned_cols=282 Identities=17% Similarity=0.196 Sum_probs=188.0
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
++++.+.|+++-=+|--..+|.|-.+|+|.++++.. .+.+.+++-.-+.|++++|..+ ...++|+++..|.+.+||+
T Consensus 198 f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~--dkil~sFk~d~g~VtslSFrtD-G~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 198 FQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKF--DKILMSFKQDWGRVTSLSFRTD-GNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred ecccccceeEeccCCcceEEEEeccCceEEEEEccc--CcEEEEEEccccceeEEEeccC-CCeeEEeccCCceEEEEEc
Confidence 667888999998888889999999999999999965 4567777633489999999754 2457899999999999999
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCCCeEEEEeCCC-C---
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAPA-M--- 161 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~-~--- 161 (302)
+.... .......|.+.|..+.|.|.++ .+.+.+.|+.+++|-..+ ++.-.+.+.+.+|..+-.++.|.-. +
T Consensus 275 e~kkl--~~v~~nah~~sv~~~~fl~~ep--Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 275 EKKKL--INVTRNAHYGSVTGATFLPGEP--VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred CCCee--eeeeeccccCCcccceecCCCc--eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEE
Confidence 76532 2233446888999999988754 899999999999884432 1111222333355554444443210 0
Q ss_pred ----C-----------------CCc-------------------------------------------------------
Q 022111 162 ----A-----------------PGA------------------------------------------------------- 165 (302)
Q Consensus 162 ----~-----------------~~~------------------------------------------------------- 165 (302)
. .+.
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 0 000
Q ss_pred --------------------eeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCc
Q 022111 166 --------------------LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPK 225 (302)
Q Consensus 166 --------------------~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 225 (302)
+.++..+.=|.+.+.|...|.|-+|++.++.-. ..+..-..|+..|..++...- +
T Consensus 431 n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~----n 505 (910)
T KOG1539|consen 431 NKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGT----N 505 (910)
T ss_pred CcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCC----C
Confidence 000000001334555555667777777665211 111112479999999987543 3
Q ss_pred cEEEEEecCCeEEEEEeccCCc--ce-------------------------e-----------eeeeccCCCcEEEEEEc
Q 022111 226 STIASASQDGTVVIWTCAKEGE--QW-------------------------E-----------GRVLKDFKTPVWSVSWS 267 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~~~~--~~-------------------------~-----------~~~~~~~~~~v~~~~~s 267 (302)
+.++|++.+|.++.||...... .+ . .+...+|.+.|.+++||
T Consensus 506 ~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 506 RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 7899999999999999865310 00 0 00123567889999999
Q ss_pred cCCCEEEEecCC-ceEEeeecCCceEEEeeecCC
Q 022111 268 LTGNLLAVADAN-NVTLWKEAVDGEWQQVSVVEP 300 (302)
Q Consensus 268 pdg~~la~~~~d-~i~~w~~~~~~~~~~~~~~~~ 300 (302)
|||+.|++++.| +|++||...+.......+-.|
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~ 619 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSP 619 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEecCCc
Confidence 999999999999 799999987666555544433
No 170
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=133.55 Aligned_cols=255 Identities=18% Similarity=0.201 Sum_probs=174.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
.++.+|...|+++.|..++ +|.+|..-|.|++|++.+... ...+. .|...|+.+.-.+ +..|.+-+.|..+.+
T Consensus 8 fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~--~~~~r~~g~~~it~lq~~p---~d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERD--LPLIRLFGRLFITNLQSIP---NDSLDTQGRDPLLIL 81 (323)
T ss_pred eEeccccchheehhhccch-hhhcccccceEEEEEeecCcc--chhhhhhccceeeceeecC---CcchhhcCCCceEEE
Confidence 3456899999999999877 488999999999999976432 33444 4677788887543 357889999999999
Q ss_pred EEcCCCCc--------------------------e--------------------eEEE----EecCCCCCeeEEEecCC
Q 022111 84 WKEGNQND--------------------------W--------------------TQAH----TFNDHKSSVNSIAWAPH 113 (302)
Q Consensus 84 wd~~~~~~--------------------------~--------------------~~~~----~~~~h~~~i~~l~~~pd 113 (302)
|++....- + +.+. .-....+.+.|..+--+
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 98754110 0 0000 00112356666665433
Q ss_pred C-CCcEEEEEecCCcEEEEEecCCCC-------eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC
Q 022111 114 E-LGLSLACGSSDGNISVFTATADGG-------WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN 185 (302)
Q Consensus 114 ~-~~~~l~sg~~d~~v~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~ 185 (302)
. ....+++|-.+|.+.+||++.+.. +........|..+|.++.+.+.. ..=++|+.+.
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~--------------~rGisgga~d 227 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC--------------DRGISGGADD 227 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh--------------cCCcCCCccc
Confidence 2 223577888899999999986421 11111123578889999887643 2236777788
Q ss_pred cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEE
Q 022111 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVS 265 (302)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 265 (302)
.+..|.+....-.+..-.+..--.-.|..+..-||+ +.+||++.|+.||||..++... ..+++-|+..|.+++
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~----KIlATAGWD~RiRVyswrtl~p---LAVLkyHsagvn~vA 300 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG----KILATAGWDHRIRVYSWRTLNP---LAVLKYHSAGVNAVA 300 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCC----cEEeecccCCcEEEEEeccCCc---hhhhhhhhcceeEEE
Confidence 888888764311111111112223447778888885 7899999999999999987532 245677889999999
Q ss_pred EccCCCEEEEecCC-ceEEeee
Q 022111 266 WSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 266 ~spdg~~la~~~~d-~i~~w~~ 286 (302)
|+||..++|+|+.| .|-+|+.
T Consensus 301 fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 301 FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eCCCCchhhhccCCceEEeeec
Confidence 99999999999999 7999984
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.3e-17 Score=135.11 Aligned_cols=254 Identities=15% Similarity=0.224 Sum_probs=175.6
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC----CCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN----SASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~----~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
..+|.+-|+.+-|+-++++||+||.|..+++|.++. ...+++..... |...|.+++|.. ..+.|.+|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~--~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL--ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc--CCeeEecCCCccee
Confidence 458999999999999999999999999999999842 22345554432 557899999964 35789999999999
Q ss_pred EEEEcCCCCceeEEEEecCCC---CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-CeeeeeecccCCCCeEEEEe
Q 022111 82 IIWKEGNQNDWTQAHTFNDHK---SSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~---~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~ 157 (302)
.+-|+++.. .+..+. |+ +.|..+..+|.+ ..+++.+.++.|.+||.+... ...+..+ ...+....++.|
T Consensus 130 I~HDiEt~q---si~V~~-~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~-AN~~~~F~t~~F 202 (609)
T KOG4227|consen 130 IKHDIETKQ---SIYVAN-ENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLP-ANSGKNFYTAEF 202 (609)
T ss_pred Eeeecccce---eeeeec-ccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeee-cCCCccceeeee
Confidence 999998753 344443 44 489999999984 489999999999999998532 2221111 122334556677
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc----------------------------c------cc--
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK----------------------------M------DC-- 201 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~----------------------------~------~~-- 201 (302)
.|-. ..+|++.+..+-+.+||.+..... + .|
T Consensus 203 ~P~~-------------P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~ 269 (609)
T KOG4227|consen 203 HPET-------------PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL 269 (609)
T ss_pred cCCC-------------ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE
Confidence 7754 267888888888999997542100 0 00
Q ss_pred c--------cccc-cCC-------CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-----------------
Q 022111 202 F--------PALQ-MHS-------DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ----------------- 248 (302)
Q Consensus 202 ~--------~~~~-~h~-------~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~----------------- 248 (302)
+ ..|+ .|. ..+.+++|.-| ..+++||++-.|.+|.+-.....
T Consensus 270 ~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 270 YFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred EeeeecccceeEeccCCCCcceeeeeeeeeeeecc-----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 0 0011 121 23566667644 56999999999999997432100
Q ss_pred e---eeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 249 W---EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 249 ~---~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
. ...++++|..-+..+.|+|...+|++.+-. .++||...
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 0 012356788888999999988877666555 79999753
No 172
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=1.3e-15 Score=130.97 Aligned_cols=225 Identities=13% Similarity=0.129 Sum_probs=145.2
Q ss_pred CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111 24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHK 102 (302)
Q Consensus 24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 102 (302)
+.++|++.|+.+++||..+. +.+..+..|.. +..++|+++ ++.+ ++++.++.+++||..+.. ....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~~~-~~~l~~~~d--g~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL--EVTRTFPVGQR-PRGITLSKD--GKLLYVCASDSDTIQVIDLATGE---VIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCC--ceEEEEECCCC-CCceEECCC--CCEEEEEECCCCeEEEEECCCCc---EEEeccCCC
Confidence 57889999999999998653 35566665543 677999764 6655 677889999999987653 334444443
Q ss_pred CCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe
Q 022111 103 SSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC 181 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 181 (302)
. +..++|+|+ +..+ ++++.++.+++||+..... ...+. +...+.+++|+|++ ..++++
T Consensus 74 ~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg--------------~~l~~~ 132 (300)
T TIGR03866 74 D-PELFALHPN--GKILYIANEDDNLVTVIDIETRKV--LAEIP--VGVEPEGMAVSPDG--------------KIVVNT 132 (300)
T ss_pred C-ccEEEECCC--CCEEEEEcCCCCeEEEEECCCCeE--EeEee--CCCCcceEEECCCC--------------CEEEEE
Confidence 3 567889998 4444 5556789999999875321 22222 22335678888864 677777
Q ss_pred eCCC-cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCcceeeeee-c--c
Q 022111 182 GCDN-TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWEGRVL-K--D 256 (302)
Q Consensus 182 ~~D~-~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~-~--~ 256 (302)
+.++ .+.+||..+... .... .....+.+++|+|++ ..| +++..++.|++||++..... ..+. . +
T Consensus 133 ~~~~~~~~~~d~~~~~~----~~~~-~~~~~~~~~~~s~dg----~~l~~~~~~~~~v~i~d~~~~~~~--~~~~~~~~~ 201 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEI----VDNV-LVDQRPRFAEFTADG----KELWVSSEIGGTVSVIDVATRKVI--KKITFEIPG 201 (300)
T ss_pred ecCCCeEEEEeCCCCeE----EEEE-EcCCCccEEEECCCC----CEEEEEcCCCCEEEEEEcCcceee--eeeeecccc
Confidence 7664 567788865421 1111 122345789999996 455 55567999999999754211 1111 0 0
Q ss_pred -C--CCcEEEEEEccCCCEEEEe--cCCceEEeeecC
Q 022111 257 -F--KTPVWSVSWSLTGNLLAVA--DANNVTLWKEAV 288 (302)
Q Consensus 257 -~--~~~v~~~~~spdg~~la~~--~~d~i~~w~~~~ 288 (302)
. ......++|+|+|+++.++ +.+.+.+|+...
T Consensus 202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 0 1123468999999986544 334799999753
No 173
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.8e-17 Score=132.05 Aligned_cols=211 Identities=15% Similarity=0.271 Sum_probs=148.2
Q ss_pred eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC
Q 022111 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG 137 (302)
Q Consensus 58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~ 137 (302)
..++.|++. |.+||.|+.||.+.|||+.+.+ ...++.+|..+|.+++||+| |..|+|+|.|..|++||+..+.
T Consensus 26 a~~~~Fs~~--G~~lAvGc~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRW--GDYLAVGCANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccC--cceeeeeccCCcEEEEEccccc---hhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC
Confidence 578999864 8999999999999999997653 45678899999999999999 7799999999999999998765
Q ss_pred CeeeeeecccCCCCeEEEEeCCCCCCC--------------------ceee------c------c-cCCCceeEEEeeCC
Q 022111 138 GWDTTRIDQAHPVGVTSVSWAPAMAPG--------------------ALVG------L------G-LLDPVQKLASCGCD 184 (302)
Q Consensus 138 ~~~~~~~~~~h~~~v~~~~~~~~~~~~--------------------~~~~------~------~-~~~~~~~l~s~~~D 184 (302)
......+ ..+|..+.|.|..... .++. + + +...|+++++|...
T Consensus 99 ~l~rirf----~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 99 PLKRIRF----DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred ceeEEEc----cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence 4322222 3345555555532110 0000 0 0 11237889999999
Q ss_pred CcEEEEEEecCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc-eeeeeeccC-----
Q 022111 185 NTVKVWKMYNGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ-WEGRVLKDF----- 257 (302)
Q Consensus 185 ~~v~iwd~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~-~~~~~~~~~----- 257 (302)
|.+.++|..+. +|+..+..-. ..|..+.++..+ ..|+.-+.|+.||.++++.-... ..+..-..+
T Consensus 175 Gkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 175 GKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKG----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred ceEEEEecchh----eeeeeeeechheeeeEEEEeccC----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 99999998764 4555554433 678899998774 88999999999999998742111 000110011
Q ss_pred --CCcEEEEEEccCCCEEEEecCC--ceEEeeec
Q 022111 258 --KTPVWSVSWSLTGNLLAVADAN--NVTLWKEA 287 (302)
Q Consensus 258 --~~~v~~~~~spdg~~la~~~~d--~i~~w~~~ 287 (302)
+.+=..+.||-||.|+.+++.. .+.||...
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~ 280 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS 280 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence 1122368899999999887765 59999854
No 174
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=5.6e-15 Score=129.52 Aligned_cols=262 Identities=14% Similarity=0.217 Sum_probs=157.2
Q ss_pred cceeEEEEccCCCEEEEee-CCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEEcCC
Q 022111 12 DTVHDVAMDFYGKRLATAS-SDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWKEGN 88 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd~~~ 88 (302)
.....++++|++++|++++ .++.|.+|++.. +....+.... ..+....+.|+++ +++|++++ .++.+.+|+++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEEECC
Confidence 4456688999999887665 578899999863 2222222222 2234567888764 67776665 488999999864
Q ss_pred CCc-eeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCCcEEEEEecCCCCeee---eeecccCCCCeEEEEeCCCCCC
Q 022111 89 QND-WTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDGNISVFTATADGGWDT---TRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 89 ~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~~v~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
... ......+. +......++++|+ +.++ ++...++.|.+||+.+.+.... .............+.|+|++
T Consensus 112 ~g~~~~~~~~~~-~~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg-- 186 (330)
T PRK11028 112 DGIPVAPIQIIE-GLEGCHSANIDPD--NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQ-- 186 (330)
T ss_pred CCCCCCceeecc-CCCcccEeEeCCC--CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCC--
Confidence 221 12223332 2234567889998 4455 5666779999999975432211 00010112234567787753
Q ss_pred CceeecccCCCceeEEEeeC-CCcEEEEEEecCcccccccccccc------CCCceeEEEeeCCCCCCccEEEEEe-cCC
Q 022111 164 GALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPALQM------HSDWVRSVAWAPNLGLPKSTIASAS-QDG 235 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~~~~------h~~~v~~v~~~p~~~~~~~~l~s~s-~D~ 235 (302)
++++++.. ++.|.+||+......++....+.. +..+...+.++|++ +++.++. .++
T Consensus 187 ------------~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg----~~lyv~~~~~~ 250 (330)
T PRK11028 187 ------------QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG----RHLYACDRTAS 250 (330)
T ss_pred ------------CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC----CEEEEecCCCC
Confidence 56655544 899999999742111122222211 22344578999986 5566664 578
Q ss_pred eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC-C-ceEEeeec-CCceEEEeee
Q 022111 236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA-N-NVTLWKEA-VDGEWQQVSV 297 (302)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~-d-~i~~w~~~-~~~~~~~~~~ 297 (302)
.|.+|++..........-...-....+.++|+|||++|+++.. + .|.+|+.. ..|.+.....
T Consensus 251 ~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~ 315 (330)
T PRK11028 251 LISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGR 315 (330)
T ss_pred eEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccc
Confidence 9999999654321110000011124567899999999998875 3 79999874 3455655444
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.4e-16 Score=131.71 Aligned_cols=198 Identities=18% Similarity=0.278 Sum_probs=148.6
Q ss_pred CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC-
Q 022111 24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK- 102 (302)
Q Consensus 24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~- 102 (302)
..+|++-..|.|+|||..+ +..+..+++|.+.+..++|.....++.+.+|+.||+||+||++..... ....++.|.
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-a~~~~~~~~~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-ARISWTQQSG 117 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-hheeccCCCC
Confidence 4578888899999999865 456778999999999999986545778999999999999999876432 333455555
Q ss_pred CCeeEEEecCCCCCcEEEEEe----cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE
Q 022111 103 SSVNSIAWAPHELGLSLACGS----SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l~sg~----~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (302)
.+..+++.+-. +.++++|. .+-.|.+||++.... .+..+...|...|+++.|.|.. ...|
T Consensus 118 ~~f~~ld~nck--~~ii~~GtE~~~s~A~v~lwDvR~~qq-~l~~~~eSH~DDVT~lrFHP~~-------------pnlL 181 (376)
T KOG1188|consen 118 TPFICLDLNCK--KNIIACGTELTRSDASVVLWDVRSEQQ-LLRQLNESHNDDVTQLRFHPSD-------------PNLL 181 (376)
T ss_pred CcceEeeccCc--CCeEEeccccccCceEEEEEEeccccc-hhhhhhhhccCcceeEEecCCC-------------CCeE
Confidence 45567766532 44677664 356888999986432 2344455899999999999964 3789
Q ss_pred EEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 179 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+|||.||.|.|||++...-. +.+.....|...|.++.|.-++ .+.|.+-+...+..+|++..
T Consensus 182 lSGSvDGLvnlfD~~~d~Ee-DaL~~viN~~sSI~~igw~~~~---ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 182 LSGSVDGLVNLFDTKKDNEE-DALLHVINHGSSIHLIGWLSKK---YKRIMCLTHMETFAIYELED 243 (376)
T ss_pred EeecccceEEeeecCCCcch-hhHHHhhcccceeeeeeeecCC---cceEEEEEccCceeEEEccC
Confidence 99999999999999754211 2233334577889999998764 35799999999999999865
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.74 E-value=3.7e-16 Score=126.77 Aligned_cols=206 Identities=16% Similarity=0.230 Sum_probs=147.3
Q ss_pred ccccccceeEEEEcc-CCCEEEEeeCCCcEEEEeecCC-CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 7 ETGHEDTVHDVAMDF-YGKRLATASSDSSIKIIGLSNS-ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
...+..+++++.|+. +-+++.+++.|.++.|||++.+ .+....+|-+|..+|..|+|... .-+++||+|+||.+|++
T Consensus 146 ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmF 224 (364)
T KOG0290|consen 146 NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMF 224 (364)
T ss_pred ccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEE
Confidence 345667888888764 5689999999999999999765 33345678899999999999753 24689999999999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
|++.....+.+..-.....+..-++|++.+. .++|+-..| ..|.+-|++... ....++. .|...|+.++|.|..
T Consensus 225 DLR~leHSTIIYE~p~~~~pLlRLswnkqDp-nymATf~~dS~~V~iLDiR~P~-tpva~L~-~H~a~VNgIaWaPhS-- 299 (364)
T KOG0290|consen 225 DLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMATFAMDSNKVVILDIRVPC-TPVARLR-NHQASVNGIAWAPHS-- 299 (364)
T ss_pred EecccccceEEecCCCCCCcceeeccCcCCc-hHHhhhhcCCceEEEEEecCCC-cceehhh-cCcccccceEecCCC--
Confidence 9987655444443333356778899998754 456665555 567778887432 2334554 899999999999975
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCcc-c-cccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-K-MDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
...|.|||.|..+-|||+..-.. . .+.+-.+. -.+.|+.|.|+|.. ++.|+.+..
T Consensus 300 -----------~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~---~Dwiai~~~ 356 (364)
T KOG0290|consen 300 -----------SSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ---PDWIAICFG 356 (364)
T ss_pred -----------CceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccC---CCEEEEEec
Confidence 36899999999999999975321 0 01111111 34569999999864 466766543
No 177
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.4e-16 Score=139.13 Aligned_cols=219 Identities=21% Similarity=0.237 Sum_probs=151.6
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
..|.||++-|.++.|+. +|.+|+|||.|-.+.|||.-..+ +++. -++|...|.++.|-|..+..++++|+.|+.
T Consensus 44 ~eL~GH~GCVN~LeWn~--dG~lL~SGSDD~r~ivWd~~~~K---llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNA--DGELLASGSDDTRLIVWDPFEYK---LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhhccccceecceeecC--CCCEEeecCCcceEEeecchhcc---eeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 35789999999999986 49999999999999999986543 3333 358999999999999877789999999999
Q ss_pred EEEEEecCCCC-------eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc
Q 022111 128 ISVFTATADGG-------WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD 200 (302)
Q Consensus 128 v~~~~~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~ 200 (302)
|++||+..... ......-+.|...|..++-.|.. ...+-++++||+++-+|++... .
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-------------PhtfwsasEDGtirQyDiREph---~ 182 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-------------PHTFWSASEDGTIRQYDIREPH---V 182 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-------------CceEEEecCCcceeeecccCCc---c
Confidence 99999874211 11111223466666666655542 2578999999999999998742 1
Q ss_pred ccccccc-------C--CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc----ee------------eeeec
Q 022111 201 CFPALQM-------H--SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ----WE------------GRVLK 255 (302)
Q Consensus 201 ~~~~~~~-------h--~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~----~~------------~~~~~ 255 (302)
|.+.... + --...|+..+|.. +.+||.|+.|-..|+||.+..... +. ..+..
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~r---p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSR---PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCC---CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 1111111 1 1135789999974 689999999999999995432100 10 00111
Q ss_pred cCC-----------CcEEEEEEccCCCEEE-EecCCceEEeeecCCce
Q 022111 256 DFK-----------TPVWSVSWSLTGNLLA-VADANNVTLWKEAVDGE 291 (302)
Q Consensus 256 ~~~-----------~~v~~~~~spdg~~la-~~~~d~i~~w~~~~~~~ 291 (302)
++- ..+.-+.|||+|..|+ .-+.+.|.+++.+....
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 111 1245689999996554 44666899999865443
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=2.9e-14 Score=126.67 Aligned_cols=246 Identities=31% Similarity=0.461 Sum_probs=171.9
Q ss_pred ceeEEEE-ccCCC-EEEEeeC-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CCeEEEEEcCC
Q 022111 13 TVHDVAM-DFYGK-RLATASS-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DGQVIIWKEGN 88 (302)
Q Consensus 13 ~v~~~~~-s~~~~-~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i~iwd~~~ 88 (302)
.+..+.+ ++++. .++..+. |+.+++|+... .......+..|...|..++|++. +..+++++. |+.+++|+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCC
Confidence 5666666 77777 5555455 99999999864 12456677889999999999864 568888885 99999999876
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
. .....+.+|...|.+++|+|+.. ..+++++.|+.+++||.... ......+ ..|.... -..|+|..
T Consensus 188 ~---~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~d~~i~~wd~~~~-~~~~~~~-~~~~~~~-~~~~~~~~------- 253 (466)
T COG2319 188 G---KPLSTLAGHTDPVSSLAFSPDGG-LLIASGSSDGTIRLWDLSTG-KLLRSTL-SGHSDSV-VSSFSPDG------- 253 (466)
T ss_pred C---ceEEeeccCCCceEEEEEcCCcc-eEEEEecCCCcEEEEECCCC-cEEeeec-CCCCcce-eEeECCCC-------
Confidence 3 35667777999999999998732 35666699999999976522 2111122 3555553 22677652
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
..+++++.|+.+++||+..... ....+.+|...|.++.|+|++ ..+++++.|+.+++|+.......
T Consensus 254 -------~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 254 -------SLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDG----KLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred -------CEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCC----CEEEEeeCCCcEEEEEcCCCceE
Confidence 5788999999999999986532 122226789999999999964 56777888999999987654321
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEEEEe-cCC-ceEEeeecCCc
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLLAVA-DAN-NVTLWKEAVDG 290 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~la~~-~~d-~i~~w~~~~~~ 290 (302)
.... ...+...+..++|++++..++.+ ..+ .+.+|+.....
T Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 320 SSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 1111 12455568999994343566565 455 68889876543
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=1.2e-15 Score=128.55 Aligned_cols=249 Identities=18% Similarity=0.249 Sum_probs=164.9
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 6 IETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
+..||+.+|.++.|.|.+ ..+||||.|-+|.||.+-.. ..+++..|.||...|-.|.|.| .-.+.|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-tA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-TAPNVLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc-cchhhHhhccCCc
Confidence 467999999999999865 68999999999999998322 2356778999999999999964 4567899999999
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC-CeEEEEeC
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV-GVTSVSWA 158 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~ 158 (302)
+|.+|++.++. .+-++. |.+.|.++.|+-| |.++++.+.|+.|++||.+.+... ... .+|.. .-....|-
T Consensus 155 ~v~iWnv~tge---ali~l~-hpd~i~S~sfn~d--Gs~l~TtckDKkvRv~dpr~~~~v--~e~-~~heG~k~~Raifl 225 (472)
T KOG0303|consen 155 TVSIWNVGTGE---ALITLD-HPDMVYSMSFNRD--GSLLCTTCKDKKVRVIDPRRGTVV--SEG-VAHEGAKPARAIFL 225 (472)
T ss_pred eEEEEeccCCc---eeeecC-CCCeEEEEEeccC--CceeeeecccceeEEEcCCCCcEe--eec-ccccCCCcceeEEe
Confidence 99999998764 344565 9999999999987 779999999999999998765321 222 24543 22233343
Q ss_pred CCCCCCceeecccCCCceeEEEee----CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCG----CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~----~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
-+ +. ++|.| .++.+-|||..+-... -.+.++....+ |.===|.||. .-.-+.|-.|
T Consensus 226 ~~--------------g~-i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtSnG-vl~PFyD~dt---~ivYl~GKGD 285 (472)
T KOG0303|consen 226 AS--------------GK-IFTTGFSRMSERQIALWDPNNLEEP-IALQELDTSNG-VLLPFYDPDT---SIVYLCGKGD 285 (472)
T ss_pred cc--------------Cc-eeeeccccccccceeccCcccccCc-ceeEEeccCCc-eEEeeecCCC---CEEEEEecCC
Confidence 22 23 44433 3677889997653221 12233333332 3322345664 2345677789
Q ss_pred CeEEEEEeccCCcceeeeeeccC--CCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 235 GTVVIWTCAKEGEQWEGRVLKDF--KTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+.||-|.+.... +.. ..+..| ..+-..+.|-|-. -+ -.+.+ -.++|+..+
T Consensus 286 ~~IRYyEit~d~-P~~-hyln~f~S~epQRG~g~mPKR-Gl-~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 286 SSIRYFEITNEP-PFV-HYLNTFSSKEPQRGMGFMPKR-GL-DVSKCEIARFYKLHE 338 (472)
T ss_pred cceEEEEecCCC-cee-EEecccccCCccccccccccc-cc-cchHHHHHHHHHhhc
Confidence 999999986532 221 222333 3456677777742 12 22233 355666544
No 180
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=2.9e-16 Score=132.50 Aligned_cols=198 Identities=23% Similarity=0.399 Sum_probs=144.9
Q ss_pred cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111 56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~ 129 (302)
.+|..+.|... ....+|||+.|..|+||.++.... ......+..|...|+++.|+|+ |.+||+|++++.|.
T Consensus 14 ~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGGEVF 90 (434)
T ss_pred CceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCceEE
Confidence 36888888653 344899999999999998753321 1234467889999999999998 77999999999999
Q ss_pred EEEecC------CC-------CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111 130 VFTATA------DG-------GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 130 ~~~~~~------~~-------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
+|.... +. .|.......+|...+..++|+|+. .++++++.|+.+++||+..+.
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------------~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------------NFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC--------------ceeeeeeccceEEEEEeccce
Confidence 997651 11 133333334688889999999864 789999999999999999873
Q ss_pred cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee---eee----ccCC-----------
Q 022111 197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG---RVL----KDFK----------- 258 (302)
Q Consensus 197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~---~~~----~~~~----------- 258 (302)
....+..|+..|..++|.|-. +++++=|.|+..+++.+......... .+. .+..
T Consensus 157 ----l~~~~~dh~~yvqgvawDpl~----qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 157 ----LLAILDDHEHYVQGVAWDPLN----QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred ----eEeeccccccccceeecchhh----hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 456778999999999999974 77999999997777765432111000 000 0001
Q ss_pred --CcEEEEEEccCCCEEEEecC
Q 022111 259 --TPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 259 --~~v~~~~~spdg~~la~~~~ 278 (302)
.-...++|+|||.+|++.++
T Consensus 229 lksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred hhhhhhhcccCCCCcEEEcccc
Confidence 12446799999999887743
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=5.3e-16 Score=135.80 Aligned_cols=214 Identities=20% Similarity=0.302 Sum_probs=156.6
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC-----CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN-----QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~-----~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~ 123 (302)
.++..|.+.|+.+.|.+- ...|++|+.|+++++|.+.. .....++.+|.+|.++|.|+++.++ +..+.+|+
T Consensus 288 ~tl~s~~d~ir~l~~~~s--ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n--~~~~ysgg 363 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPS--EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN--GEHCYSGG 363 (577)
T ss_pred eeeecchhhhhhhhcCCC--CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC--ceEEEeec
Confidence 467789999999999542 45789999999999999832 2235678899999999999999886 77999999
Q ss_pred cCCcEEEEEecCCC----Ce---eeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111 124 SDGNISVFTATADG----GW---DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 124 ~d~~v~~~~~~~~~----~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
-||+|+.|.+.... .. .+.....+|+..+..+++++.. .+|++|+.||++|+|+.....
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--------------~~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--------------DRLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--------------cceeeecCCceEEeeccCCcC
Confidence 99999999664211 01 1122234788888888887653 679999999999999964321
Q ss_pred c--------------------c-----------------cccc---ccc--c-----cCCCceeEEEeeCCCCCCccEEE
Q 022111 197 W--------------------K-----------------MDCF---PAL--Q-----MHSDWVRSVAWAPNLGLPKSTIA 229 (302)
Q Consensus 197 ~--------------------~-----------------~~~~---~~~--~-----~h~~~v~~v~~~p~~~~~~~~l~ 229 (302)
. . +... ..+ . .....++-+.++|.. ....
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~----~~~~ 505 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA----DITF 505 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC----CeeE
Confidence 1 0 0000 000 0 011347788888875 6788
Q ss_pred EEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 230 SASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 230 s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
++-+|+.|+++|.....-. .. ...+...+.++++-|+|-+|+++++| .+++|+..
T Consensus 506 ~~hed~~Ir~~dn~~~~~l--~s-~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKIL--HS-MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred ecccCCceecccccccccc--hh-eeeccceecceeecCCCceEEeecCCceeehhhcc
Confidence 9999999999997653211 01 13456779999999999999999999 79999863
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2e-15 Score=125.04 Aligned_cols=196 Identities=13% Similarity=0.196 Sum_probs=135.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
+.+|++...++|++||..+++ .+..|+++...++.++|..++.+..+.+|+.||+|++||++........... .++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~---~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ---LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh---hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCC
Confidence 567888888999999987753 5677888999999999976544567999999999999999865433222222 222
Q ss_pred -CCeEEEEeCCCCCCCceeecccCCCceeEEEeeC----CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCC
Q 022111 150 -VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC----DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224 (302)
Q Consensus 150 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 224 (302)
.+..+++-+ .+...++.|.. |-.|.+||++..++.+.+ -...|.+-|++|+|+|+.
T Consensus 117 ~~~f~~ld~n--------------ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DDVT~lrFHP~~--- 177 (376)
T KOG1188|consen 117 GTPFICLDLN--------------CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDDVTQLRFHPSD--- 177 (376)
T ss_pred CCcceEeecc--------------CcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCcceeEEecCCC---
Confidence 222333211 12234444433 567999999987543333 235799999999999985
Q ss_pred ccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111 225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~ 288 (302)
++.|+|||-||.+.+||+....+.-.....-.+...|-.+.|..++ ++|-+-++. +..+|+..+
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~ 243 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED 243 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence 7999999999999999997643211001112445668899999887 345455555 899998754
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2e-14 Score=114.19 Aligned_cols=236 Identities=18% Similarity=0.247 Sum_probs=155.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecC--------CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSN--------SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
.|..-+++|.+++|++|..+|+|.+..+.+ +....+....+|+++|+.++|. ...|.+|+ ||.|+=|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~----d~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH----DDFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee----hhheeecc-CceEEEe
Confidence 455557899999999999999999998732 1122455668999999999995 24666765 5999999
Q ss_pred EcCCCCc---eeEEE--EecCC-----CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111 85 KEGNQND---WTQAH--TFNDH-----KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS 154 (302)
Q Consensus 85 d~~~~~~---~~~~~--~~~~h-----~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~ 154 (302)
..++... .+.+. ....| -..|+++-+-|.++ .+..++.|+.++-||++++ .+. ..++ +|+.-+.+
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G-~i~-r~~r-GHtDYvH~ 161 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDG-RIQ-REYR-GHTDYVHS 161 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCC-EEE-EEEc-CCcceeee
Confidence 7643221 00100 01112 24688998888754 3555568999999999854 232 3444 89998888
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc------ccccC-CCceeEEEeeCCCCCCccE
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP------ALQMH-SDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~------~~~~h-~~~v~~v~~~p~~~~~~~~ 227 (302)
+.--.. ..+++||++||++||||+++.+-. ..+. .+..| ..||.+++-+.| .
T Consensus 162 vv~R~~--------------~~qilsG~EDGtvRvWd~kt~k~v-~~ie~yk~~~~lRp~~g~wigala~~ed------W 220 (325)
T KOG0649|consen 162 VVGRNA--------------NGQILSGAEDGTVRVWDTKTQKHV-SMIEPYKNPNLLRPDWGKWIGALAVNED------W 220 (325)
T ss_pred eeeccc--------------CcceeecCCCccEEEEecccccee-EEeccccChhhcCcccCceeEEEeccCc------e
Confidence 764211 357999999999999999886311 1111 12233 457889887654 4
Q ss_pred EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec-CCceEEeee
Q 022111 228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD-ANNVTLWKE 286 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-~d~i~~w~~ 286 (302)
++.| ....+.+|.++...- .....+..++.-+.|-. +.+++++ ++.+.-|..
T Consensus 221 lvCG-gGp~lslwhLrsse~----t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 221 LVCG-GGPKLSLWHLRSSES----TCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred EEec-CCCceeEEeccCCCc----eEEEecccceeEeeeec--ceEEEeccccceeeeee
Confidence 5554 456689999987532 22245567788888843 3455554 446887875
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=9.7e-15 Score=136.19 Aligned_cols=252 Identities=14% Similarity=0.177 Sum_probs=167.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC---cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG---HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
+-..+.|+|....++++..--.|++||.+.+ +.+..|.. -...|+.+++.+..+..++.+|+.||.||||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 4455788999999998887788999998653 33333432 245689999988777778999999999999975221
Q ss_pred --CceeEEEEe---cCC----CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111 90 --NDWTQAHTF---NDH----KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 90 --~~~~~~~~~---~~h----~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 160 (302)
...+.+..+ .++ .+.-.-++|... .|. |.++++-+.|+|||....... ..+..+....++++.-+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~-~G~-Ll~tGd~r~IRIWDa~~E~~~--~diP~~s~t~vTaLS~~~- 1218 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQ-SGH-LLVTGDVRSIRIWDAHKEQVV--ADIPYGSSTLVTALSADL- 1218 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhh-CCe-EEecCCeeEEEEEecccceeE--eecccCCCccceeecccc-
Confidence 111222211 111 112234567543 455 555555899999998754322 222212223344443211
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCc--eeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW--VRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
..+..++.|-.||.|++||.+-.... ..+.....|.++ |..+.+.++| + ..|++||.||.|+
T Consensus 1219 ------------~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G-~--~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1219 ------------VHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQG-L--GELVSGSQDGDIQ 1282 (1387)
T ss_pred ------------cCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCC-C--cceeeeccCCeEE
Confidence 12578999999999999998754321 223456778887 9999999876 2 3799999999999
Q ss_pred EEEeccCCcceeee--eeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111 239 IWTCAKEGEQWEGR--VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA 287 (302)
Q Consensus 239 iwd~~~~~~~~~~~--~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~ 287 (302)
+||++......... ...++++...++.-+++..++|+|+...|.||+..
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS 1333 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC
Confidence 99999742111111 11344556889999999999999988789999974
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2e-14 Score=131.90 Aligned_cols=270 Identities=20% Similarity=0.267 Sum_probs=168.9
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEe-ec-CCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIG-LS-NSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~-~~-~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
.|...+++.++||+++++|+|..||.|.+|. +. .........+.-|.++|.+++|+++ |.+|.||+.++.+.+|.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC--CceEeecccceEEEEEee
Confidence 5777789999999999999999999999995 33 1222345667889999999999974 899999999999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeec-------ccCCCCeEEEEeC
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRID-------QAHPVGVTSVSWA 158 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~-------~~h~~~v~~~~~~ 158 (302)
.++. .+-+.--..+|..+.++|| +...+..-.|+.|.+-...+... ..+..+. .....-.+.++.+
T Consensus 281 ~T~~----kqfLPRLgs~I~~i~vS~d--s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 281 ETGK----KQFLPRLGSPILHIVVSPD--SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred cCCC----cccccccCCeeEEEEEcCC--CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 7753 1223345789999999998 44677777799998875532100 0000000 0001112334444
Q ss_pred CCC-------CCCce--eec--------------cc----------------CCCceeEEEeeC--------CC--cEEE
Q 022111 159 PAM-------APGAL--VGL--------------GL----------------LDPVQKLASCGC--------DN--TVKV 189 (302)
Q Consensus 159 ~~~-------~~~~~--~~~--------------~~----------------~~~~~~l~s~~~--------D~--~v~i 189 (302)
|.. .++.+ ..+ .. .-.+..++|.-. |+ .+|+
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKF 434 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKF 434 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEE
Confidence 421 01100 000 00 001233333311 21 3455
Q ss_pred EEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc------CCcceeeeeec-cCCCcE
Q 022111 190 WKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK------EGEQWEGRVLK-DFKTPV 261 (302)
Q Consensus 190 wd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~------~~~~~~~~~~~-~~~~~v 261 (302)
|--....+.+..... -..|...+...++.+... ....++++.||.+|||-+.. ....|...... -++.++
T Consensus 435 W~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r--s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 435 WQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR--SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EEEcCCcceeEEEEEEecCCCceeEEEEEecCcc--cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 654433222221111 235777766766654321 23799999999999999833 22234333222 245689
Q ss_pred EEEEEccCCCEEEEecCCceEEeeecC
Q 022111 262 WSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 262 ~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
.+++||.||..|+++-++.|.+||...
T Consensus 513 ~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 513 TALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred cchhhcCCCcEEEEecCCEEEEecCCC
Confidence 999999999999999999999999754
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.68 E-value=5.5e-14 Score=117.67 Aligned_cols=237 Identities=16% Similarity=0.195 Sum_probs=150.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe--EEEEEcCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ--VIIWKEGN 88 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~--i~iwd~~~ 88 (302)
...+..++|+.+...|..|+.||. ++|+.+.. .+...... ..-.|--+=|+ ..++|..+.+.- +++.+.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~-~k~~~~~~-~~~~IvEmLFS----SSLvaiV~~~qpr~Lkv~~~Kk 77 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPF-EKCFSKDT-EGVSIVEMLFS----SSLVAIVSIKQPRKLKVVHFKK 77 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCch-HHhhcccC-CCeEEEEeecc----cceeEEEecCCCceEEEEEccc
Confidence 456777889999999999998884 78776431 22111111 12223344454 356676665444 88888765
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
.... + .+. ...+|.++.++.+ +|+.+=.+ .|.|||++.............++..+..+..++.
T Consensus 78 ~~~I-C--e~~-fpt~IL~VrmNr~----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~-------- 140 (391)
T KOG2110|consen 78 KTTI-C--EIF-FPTSILAVRMNRK----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNA-------- 140 (391)
T ss_pred CceE-E--EEe-cCCceEEEEEccc----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCC--------
Confidence 5322 2 222 4567999999754 45555444 4999999865332211111123444444333322
Q ss_pred cccCCCceeEEE--eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe-EEEEEeccC
Q 022111 169 LGLLDPVQKLAS--CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-VVIWTCAKE 245 (302)
Q Consensus 169 ~~~~~~~~~l~s--~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-i~iwd~~~~ 245 (302)
+.+||- +..-|.|.|||+.+- .....+..|++.+-+++|+|+| ..|||+|+.|+ ||+|.+...
T Consensus 141 ------n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G----~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 141 ------NCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDG----TLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred ------CceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCC----CEEEEeccCceEEEEEEcCCc
Confidence 223443 223678999998764 3344567899999999999996 78999999997 899998654
Q ss_pred CcceeeeeeccC-CCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 246 GEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 246 ~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
... .++..+. -..|++++|+||+.+|++.+.. +|++++..
T Consensus 207 ~kl--~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 207 QKL--YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred cEe--eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 322 2222222 2458999999999999888776 89999974
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=1.9e-15 Score=134.23 Aligned_cols=245 Identities=17% Similarity=0.213 Sum_probs=157.7
Q ss_pred CCCEEEE--eeCCCcEEEEeecCCCceEEEEecC--cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----cee
Q 022111 22 YGKRLAT--ASSDSSIKIIGLSNSASQHLATLKG--HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWT 93 (302)
Q Consensus 22 ~~~~l~s--~~~d~~v~lw~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~ 93 (302)
+.+++|. +|..|.|-||++.....-+-..+.+ ....|+.+.|.| .+...||.++.||.|+||.+..+. ..+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~t 668 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEMT 668 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccCC
Confidence 3455543 3567899999996532111111211 345689999976 467899999999999999985432 234
Q ss_pred EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111 94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD 173 (302)
Q Consensus 94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 173 (302)
+...++.|.++|.++.|+|-. ...|++++.|.+|++||+..... ...+ .+|..+|..++|+|++
T Consensus 669 Pe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~~~~--~~~l-~gHtdqIf~~AWSpdG------------ 732 (1012)
T KOG1445|consen 669 PEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLANAKL--YSRL-VGHTDQIFGIAWSPDG------------ 732 (1012)
T ss_pred cceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhhhhh--hhee-ccCcCceeEEEECCCC------------
Confidence 556788999999999999974 45799999999999999985432 2334 3899999999999974
Q ss_pred CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC----eEEEEEeccCCcce
Q 022111 174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG----TVVIWTCAKEGEQW 249 (302)
Q Consensus 174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~----~i~iwd~~~~~~~~ 249 (302)
+++|+.+.|++|++|..+++...+..-....+ ..--.|-|.-|+ .+++..+.|+ .|.+||.+.....-
T Consensus 733 --r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdg----r~viv~Gfdk~SeRQv~~Y~Aq~l~~~p 804 (1012)
T KOG1445|consen 733 --RRIATVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDG----RIVIVVGFDKSSERQVQMYDAQTLDLRP 804 (1012)
T ss_pred --cceeeeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecC----cEEEEecccccchhhhhhhhhhhccCCc
Confidence 89999999999999998876432211111111 222456676664 6777777765 36677655321000
Q ss_pred eeeeeccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecCCce
Q 022111 250 EGRVLKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 250 ~~~~~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~~~~ 291 (302)
......+..-.+.-=.|.+|. -++++|-.| .|.+|..-.+.+
T Consensus 805 l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 805 LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 000000110011111244554 455777777 699998754444
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1e-14 Score=132.13 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=144.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeE
Q 022111 6 IETGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQV 81 (302)
Q Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i 81 (302)
....|...+.+.+|+|||++|+..+.+ .+|++||+..+..+.+..+.+|. ..++|+|+ |+.|+.+ +.++.+
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD--G~~La~~~~~~g~~ 272 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD--GSRLAFASSKDGVL 272 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC--CCEEEEEEecCCcE
Confidence 345677789999999999999987754 36999998765444455555553 36789874 7777765 468887
Q ss_pred EEEEc--CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE-ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111 82 IIWKE--GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG-SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 158 (302)
Q Consensus 82 ~iwd~--~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg-~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 158 (302)
.||.+ .+. ....+..+...+....|+|| |..|+.. ..++...+|++...+... ..+ .+.. ....|+
T Consensus 273 ~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~~~~~~~~~~-~~l--~~~~--~~~~~S 341 (429)
T PRK01742 273 NIYVMGANGG----TPSQLTSGAGNNTEPSWSPD--GQSILFTSDRSGSPQVYRMSASGGGA-SLV--GGRG--YSAQIS 341 (429)
T ss_pred EEEEEECCCC----CeEeeccCCCCcCCEEECCC--CCEEEEEECCCCCceEEEEECCCCCe-EEe--cCCC--CCccCC
Confidence 77754 332 23445567777889999998 5555544 457888999876433211 111 2222 345677
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
|+ ++.|+..+.++ +.+||+.++... .+ ...+ ...+++|+|++ .+|+.++.++.++
T Consensus 342 pD--------------G~~ia~~~~~~-i~~~Dl~~g~~~--~l--t~~~--~~~~~~~sPdG----~~i~~~s~~g~~~ 396 (429)
T PRK01742 342 AD--------------GKTLVMINGDN-VVKQDLTSGSTE--VL--SSTF--LDESPSISPNG----IMIIYSSTQGLGK 396 (429)
T ss_pred CC--------------CCEEEEEcCCC-EEEEECCCCCeE--Ee--cCCC--CCCCceECCCC----CEEEEEEcCCCce
Confidence 75 46777776665 556998776322 11 1111 23568899996 7899999999999
Q ss_pred EEEeccCCcceeeeeeccCCCcEEEEEEccC
Q 022111 239 IWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT 269 (302)
Q Consensus 239 iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd 269 (302)
+|.+....... ...+..+.+.+...+|||-
T Consensus 397 ~l~~~~~~G~~-~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 397 VLQLVSADGRF-KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEECCCCc-eEEccCCCCCCCCcccCCC
Confidence 88875322211 1233455667888999983
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.2e-15 Score=127.84 Aligned_cols=202 Identities=17% Similarity=0.207 Sum_probs=142.1
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111 15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ 94 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 94 (302)
..++|+.+|..|++++.||++|+|++.+ ...+.....|.+.|.++.|+++ |+.|++.+.| ..++|+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc--chhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCchhhh
Confidence 4578999999999999999999999643 2344566789999999999874 8999999999 999999987642211
Q ss_pred EEEecCCCCCeeEEEecCCCC--CcEEE-EEecCCcEEEEEecCCCC--e-eeeeecccCCCCeEEEEeCCCCCCCceee
Q 022111 95 AHTFNDHKSSVNSIAWAPHEL--GLSLA-CGSSDGNISVFTATADGG--W-DTTRIDQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 95 ~~~~~~h~~~i~~l~~~pd~~--~~~l~-sg~~d~~v~~~~~~~~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
.+-..-+.....|.|+.|.. ..+++ .-...+.|+.|++..-.. . ...... .-...+++++-++
T Consensus 223 -~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~--------- 291 (398)
T KOG0771|consen 223 -KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSD--------- 291 (398)
T ss_pred -cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcC---------
Confidence 11123455677888987641 22333 334456777776642110 0 111111 1122466666655
Q ss_pred cccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 169 LGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+|+++|.|+.||.|-|++..+-+ .....-..|...|+.|.|+||. +.+++.|.|...++..+..
T Consensus 292 -----dGkf~AlGT~dGsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pds----r~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 292 -----DGKFLALGTMDGSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDS----RYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -----CCcEEEEeccCCcEEEEEeceee---eeEeehhhheeeeeeEEEcCCc----CcccccccCCceeEEEEee
Confidence 46999999999999999987642 1122346799999999999995 6789999999999988754
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.7e-15 Score=128.56 Aligned_cols=268 Identities=17% Similarity=0.200 Sum_probs=181.9
Q ss_pred CCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 2 PAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
..+..+.+|.+-|..+.|...|..|+|||.|.+|.+||+..... .+.-..||...|..-.|.|..+..-+++++.||++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc-ccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34566789999999999999999999999999999999976432 22233689999999999876555679999999999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWA 158 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~ 158 (302)
++=.+...+...-.+.+..|.++|..++.-|+. ...+.+++.|+.+.-.|++.............+.. ...+++-.
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 997764333222244566799999999999885 35699999999999999886543332222222222 34455555
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccc-------cccccccc-cCCCceeEEEeeCCCCCCccEEEE
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWK-------MDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~-------~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s 230 (302)
|.. ...+++++.|..+++||.+.-... -.|.+.+. ...-.|+|++|+.++ +..|++
T Consensus 291 P~n-------------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~---sElLaS 354 (559)
T KOG1334|consen 291 PRN-------------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG---SELLAS 354 (559)
T ss_pred CCC-------------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc---cceeee
Confidence 532 357999999999999998653211 01111221 123459999999775 355665
Q ss_pred EecCCeEEEEEeccCCc----------ceeeeeeccCC--CcEEEEE-EccCCCEEEEecCC-ceEEeeecC
Q 022111 231 ASQDGTVVIWTCAKEGE----------QWEGRVLKDFK--TPVWSVS-WSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~~~----------~~~~~~~~~~~--~~v~~~~-~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
-+ |--|.+|.-..... +....+.++|. ..|..+- |-|..+|+++|++. .|.||+-+.
T Consensus 355 Yn-De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 355 YN-DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred ec-ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecch
Confidence 54 55577875332211 11111234453 2466776 46888999999877 699999643
No 191
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=8.8e-16 Score=136.26 Aligned_cols=199 Identities=18% Similarity=0.262 Sum_probs=135.1
Q ss_pred cceeEEEEcc-CCCEEEEeeCCCcEEEEeecCCC-----ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 12 DTVHDVAMDF-YGKRLATASSDSSIKIIGLSNSA-----SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 12 ~~v~~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..|+++.|+| |.+.||.+++||.|+||.+..+. ..+-..+.+|...|+.++|.| --.++|+++++|-+|+|||
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHP-LAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHP-LAADVLAVASYDSTIELWD 706 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecc-hhhhHhhhhhccceeeeee
Confidence 4688899987 56899999999999999985432 233456789999999999964 4578999999999999999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+++.. ....+.+|.+.|..++|+|| |.++|+.+.|+++++|.-++.. ..+.+-...-...--.+.|.-+
T Consensus 707 l~~~~---~~~~l~gHtdqIf~~AWSpd--Gr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacd----- 775 (1012)
T KOG1445|consen 707 LANAK---LYSRLVGHTDQIFGIAWSPD--GRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACD----- 775 (1012)
T ss_pred hhhhh---hhheeccCcCceeEEEECCC--CcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEec-----
Confidence 98764 34467899999999999999 7899999999999999765321 1111100000111223445432
Q ss_pred eeecccCCCceeEEEeeCCC----cEEEEEEecCccccccccccccCCCceeEEEe---------eCCCCCCccEEEEEe
Q 022111 166 LVGLGLLDPVQKLASCGCDN----TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAW---------APNLGLPKSTIASAS 232 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~----~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~---------~p~~~~~~~~l~s~s 232 (302)
+.+++..|.|+ .|.+||..+- .+..-.+..++. .+|. +..|++|-
T Consensus 776 ---------gr~viv~Gfdk~SeRQv~~Y~Aq~l----------~~~pl~t~~lDvaps~LvP~YD~Ds---~~lfltGK 833 (1012)
T KOG1445|consen 776 ---------GRIVIVVGFDKSSERQVQMYDAQTL----------DLRPLYTQVLDVAPSPLVPHYDYDS---NVLFLTGK 833 (1012)
T ss_pred ---------CcEEEEecccccchhhhhhhhhhhc----------cCCcceeeeecccCccccccccCCC---ceEEEecC
Confidence 35555555554 4566665431 100001112222 2232 35789999
Q ss_pred cCCeEEEEEecc
Q 022111 233 QDGTVVIWTCAK 244 (302)
Q Consensus 233 ~D~~i~iwd~~~ 244 (302)
.|..|.+|.+-.
T Consensus 834 GD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 834 GDRFVNMYEVIY 845 (1012)
T ss_pred CCceEEEEEecC
Confidence 999999998754
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=3.3e-14 Score=129.49 Aligned_cols=233 Identities=20% Similarity=0.230 Sum_probs=155.9
Q ss_pred CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEE-EEecCCCCCeeEEE
Q 022111 33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQA-HTFNDHKSSVNSIA 109 (302)
Q Consensus 33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~-~~~~~h~~~i~~l~ 109 (302)
+.+.+|++..+ ..+-..+. -...|.+++|++. ++.+||.|..+|+|.+||++.+.. ...+ .....|..++..+.
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~-~~s~v~~~~f~p~-~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLE-SPSEVTCLKFCPF-DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCC-CCceEEEe-cCCceeEEEeccC-CcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 47899999765 33334443 3567999999764 689999999999999999976543 1111 12335889999999
Q ss_pred ecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeee--cc------cCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111 110 WAPHELGLSLACGSSDGNISVFTATADGG-WDTTRI--DQ------AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180 (302)
Q Consensus 110 ~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~--~~------~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s 180 (302)
|-.+..+.-+++++.||.|..|+.+.-.. ...... .. .-...+++++|.|.. ...|+.
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-------------p~~FiV 365 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-------------PNHFIV 365 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-------------CceEEE
Confidence 98765455699999999999998753211 110000 00 112356777776643 256889
Q ss_pred eeCCCcEEEEEEecCcccc----ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111 181 CGCDNTVKVWKMYNGIWKM----DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256 (302)
Q Consensus 181 ~~~D~~v~iwd~~~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 256 (302)
|+.+|.|.-=.-....... +.+..+..|.++|+++.++|=+ ...|++++ |.++|||.......+. .....
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~---~k~fls~g-DW~vriWs~~~~~~Pl--~~~~~ 439 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY---PKNFLSVG-DWTVRIWSEDVIASPL--LSLDS 439 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc---cceeeeec-cceeEeccccCCCCcc--hhhhh
Confidence 9999988763322111111 2244667799999999999975 35566666 9999999866221111 11133
Q ss_pred CCCcEEEEEEccCC-CEEEEecCC-ceEEeeec
Q 022111 257 FKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 257 ~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~ 287 (302)
....|.+++|||.- ..++++..+ +|.+||..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 44559999999965 678888877 79999974
No 193
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=114.11 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=133.2
Q ss_pred eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc-------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111 58 VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130 (302)
Q Consensus 58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~-------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~ 130 (302)
|.+-+++|+ +++|+.|+.+|+|-+..+++... ...+..+++|.++|+.++|..+ .|++|++ |.|+=
T Consensus 13 vf~qa~sp~--~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~----~Lls~gd-G~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPS--KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD----FLLSGGD-GLVYG 85 (325)
T ss_pred HHHHhhCCc--ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh----heeeccC-ceEEE
Confidence 444566665 78999999999999998753211 1234456789999999999832 5666654 99998
Q ss_pred EEecCCCC----eeeeeec-ccCC-----CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc
Q 022111 131 FTATADGG----WDTTRID-QAHP-----VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD 200 (302)
Q Consensus 131 ~~~~~~~~----~~~~~~~-~~h~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~ 200 (302)
|..+.... ..+.+.. ..|. -.|+++...|.. .-++.++.|+.++-||+.++ +
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e--------------nSi~~AgGD~~~y~~dlE~G----~ 147 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE--------------NSILFAGGDGVIYQVDLEDG----R 147 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC--------------CcEEEecCCeEEEEEEecCC----E
Confidence 87653221 0111110 0111 124445444432 34566668999999999998 3
Q ss_pred cccccccCCCceeEEEe-eCCCCCCccEEEEEecCCeEEEEEeccCCcceee------eeec-cCCCcEEEEEEccCCCE
Q 022111 201 CFPALQMHSDWVRSVAW-APNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG------RVLK-DFKTPVWSVSWSLTGNL 272 (302)
Q Consensus 201 ~~~~~~~h~~~v~~v~~-~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~------~~~~-~~~~~v~~~~~spdg~~ 272 (302)
..+++.||++.|.++.- +.+ ..|+||++||++||||+++.+....- +.+. +....|.+++- +...
T Consensus 148 i~r~~rGHtDYvH~vv~R~~~-----~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edW 220 (325)
T KOG0649|consen 148 IQREYRGHTDYVHSVVGRNAN-----GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDW 220 (325)
T ss_pred EEEEEcCCcceeeeeeecccC-----cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCce
Confidence 45678999999999987 333 46999999999999999875432110 1111 12334656654 5579
Q ss_pred EEEecCCceEEeeecCCce
Q 022111 273 LAVADANNVTLWKEAVDGE 291 (302)
Q Consensus 273 la~~~~d~i~~w~~~~~~~ 291 (302)
|++|+..++.||....+..
T Consensus 221 lvCGgGp~lslwhLrsse~ 239 (325)
T KOG0649|consen 221 LVCGGGPKLSLWHLRSSES 239 (325)
T ss_pred EEecCCCceeEEeccCCCc
Confidence 9999888999998754433
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.7e-15 Score=124.24 Aligned_cols=206 Identities=19% Similarity=0.150 Sum_probs=140.2
Q ss_pred EEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC
Q 022111 59 WQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG 138 (302)
Q Consensus 59 ~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~ 138 (302)
..++|+.+ |..|++++.||++|+|+..+.. .......|...|.++.|+|| |+.|++-+.| ..++|+..++..
T Consensus 148 k~vaf~~~--gs~latgg~dg~lRv~~~Ps~~---t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGD--GSKLATGGTDGTLRVWEWPSML---TILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCC--CCEeeeccccceEEEEecCcch---hhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccCch
Confidence 45788753 7899999999999999965542 33445568899999999999 7899999999 999999986643
Q ss_pred eeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccc-cccccccccCCCceeEEE
Q 022111 139 WDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWK-MDCFPALQMHSDWVRSVA 216 (302)
Q Consensus 139 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~-~~~~~~~~~h~~~v~~v~ 216 (302)
+..... ..-......+.|+.+... +.-+++ .-..-+.|+.||+....+. +-.......-...|.+++
T Consensus 220 ~a~~t~-~~k~~~~~~cRF~~d~~~----------~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 220 LARKTP-FSKDEMFSSCRFSVDNAQ----------ETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred hhhcCC-cccchhhhhceecccCCC----------ceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE
Confidence 321111 122233455666544321 112333 3345667888887533221 001111222234599999
Q ss_pred eeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCC
Q 022111 217 WAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVD 289 (302)
Q Consensus 217 ~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~ 289 (302)
.+++| +++|-|+.||.|-|++..+... .......|..-|..+.|+||.++++..+.+ ...+...+.+
T Consensus 289 VS~dG----kf~AlGT~dGsVai~~~~~lq~--~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 289 VSDDG----KFLALGTMDGSVAIYDAKSLQR--LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred EcCCC----cEEEEeccCCcEEEEEeceeee--eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99985 8899999999999999876421 112335677789999999999999988887 6888887653
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=2.7e-14 Score=127.64 Aligned_cols=208 Identities=21% Similarity=0.286 Sum_probs=144.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeC-------------------
Q 022111 5 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAH------------------- 65 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~------------------- 65 (302)
+++.||++.|++++|+.||+.+|||+.|+.|.+|+..-+ -+.. ..|.+.|.|+.|+|
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE---G~Lk-YSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~ 122 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE---GILK-YSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE 122 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEeccccc---ceee-eccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence 567799999999999999999999999999999975321 1111 13444444444432
Q ss_pred ------------------CCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC---CcEEEEEec
Q 022111 66 ------------------PKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL---GLSLACGSS 124 (302)
Q Consensus 66 ------------------~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~---~~~l~sg~~ 124 (302)
.++|++++-|-.||+|.|-+-.. .+...+..-.+.+.+|.+++|+|... ...++..++
T Consensus 123 qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 123 QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 13578888888888888864322 12123334456789999999999742 247888899
Q ss_pred CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc
Q 022111 125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA 204 (302)
Q Consensus 125 d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~ 204 (302)
..++.+|.++.. .+.. ...-...-.++.+.| +|.+++.||.|+.+++|--. + -.+.+
T Consensus 202 ~qTLSFy~LsG~---~Igk-~r~L~FdP~CisYf~--------------NGEy~LiGGsdk~L~~fTR~-G----vrLGT 258 (1081)
T KOG1538|consen 202 GQTLSFYQLSGK---QIGK-DRALNFDPCCISYFT--------------NGEYILLGGSDKQLSLFTRD-G----VRLGT 258 (1081)
T ss_pred cceeEEEEecce---eecc-cccCCCCchhheecc--------------CCcEEEEccCCCceEEEeec-C----eEEee
Confidence 999999877521 1000 001122234555555 46899999999999998643 3 23445
Q ss_pred cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+.....||..++..|++ ++++.|..||+|-.|++..
T Consensus 259 vg~~D~WIWtV~~~PNs----Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNS----QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccccceeEEEEEEccCC----ceEEEEEccCeeehhhhHH
Confidence 55678899999999995 7899999999999999753
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=9.2e-15 Score=127.90 Aligned_cols=222 Identities=17% Similarity=0.217 Sum_probs=153.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEE-ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLAT-LKGHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
++.+.||++=|+++.|+.+|.+|+||++|-.+.|||.... +.+.. -.||.+.|.++.|.|-....+|+||+.|+.|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc--ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4557899999999999999999999999999999998643 33333 36899999999998876677999999999999
Q ss_pred EEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee-----ecccC--
Q 022111 83 IWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR-----IDQAH-- 148 (302)
Q Consensus 83 iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~-----~~~~h-- 148 (302)
++|+...+ ...+...+.-|...|.-++-.|+.+ ..+-+++.||+++-||++......... +..-+
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P-htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP-HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCC-ceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99986421 1223445667899999999988742 578899999999999998643221110 00001
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC------ccc-cc-------cccccc-cCC----
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG------IWK-MD-------CFPALQ-MHS---- 209 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~------~~~-~~-------~~~~~~-~h~---- 209 (302)
.....++..+|.. ..+|+.|+.|...++||.+.- .++ .. |++.|. +|-
T Consensus 200 lielk~ltisp~r-------------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 200 LIELKCLTISPSR-------------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred hheeeeeeecCCC-------------CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence 1234556666643 368999999999999994321 011 01 122221 222
Q ss_pred ----Cc---eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 210 ----DW---VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 210 ----~~---v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.. ++-+.|+|+| ...|++-+.+ .|.++|+...
T Consensus 267 gn~~~~~~~~t~vtfnpNG---tElLvs~~gE-hVYlfdvn~~ 305 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNG---TELLVSWGGE-HVYLFDVNED 305 (758)
T ss_pred cccccceeeeEEEEECCCC---cEEEEeeCCe-EEEEEeecCC
Confidence 12 3457889986 2455555444 5889998653
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.63 E-value=1.1e-14 Score=127.17 Aligned_cols=239 Identities=17% Similarity=0.228 Sum_probs=153.8
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEe------eCCCCCCEEEEEeCCCeEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAW------AHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~------~~~~~~~~l~s~s~D~~i~ 82 (302)
.|...|-++.|+.+...+.+++++..+..|++.+...+.+ .+. ...|...-+ -.......++.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA-KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhh-hCC--cccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 5667777788888777776665554455556654332211 111 111111111 0011245788999999999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
|..-.. .-......|.+.|.+-.|+|| |.-|++.+.||.|++|.-. +... +.+- ....+|.|++|.|+.
T Consensus 89 il~k~~----rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrs--GMLR-Stl~-Q~~~~v~c~~W~p~S- 157 (737)
T KOG1524|consen 89 ILNKSA----RVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRS--GMLR-STVV-QNEESIRCARWAPNS- 157 (737)
T ss_pred Eecccc----hhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEecc--chHH-HHHh-hcCceeEEEEECCCC-
Confidence 975321 123356679999999999999 6679999999999999743 2221 1111 235679999999974
Q ss_pred CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
+..+.+.+ +.+.|=-+... ..+.....|.+-|.|++|+|.. +.|+||++|-..+|||.
T Consensus 158 ------------~~vl~c~g--~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s----~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 158 ------------NSIVFCQG--GHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQS----NIIASGGEDFRFKIWDA 215 (737)
T ss_pred ------------CceEEecC--CeEEEeecccc----cceeEEeccCcEEEEeecCccc----cceeecCCceeEEeecc
Confidence 23333333 34444333222 1123467899999999999985 78999999999999997
Q ss_pred ccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111 243 AKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
..... - ....++-+|.+++|+|| +.+++++.+.+++=....
T Consensus 216 ~G~~L--f--~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p~~ 256 (737)
T KOG1524|consen 216 QGANL--F--TSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSPRV 256 (737)
T ss_pred cCccc--c--cCChhccceeeeeeccc-cceeeeeeeeeeecCCCc
Confidence 64211 0 11345668999999999 788899888887544433
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=3.4e-12 Score=111.94 Aligned_cols=239 Identities=16% Similarity=0.190 Sum_probs=141.4
Q ss_pred EEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEEEEEcCCCCceeEEEEecCCCC
Q 022111 26 LATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVIIWKEGNQNDWTQAHTFNDHKS 103 (302)
Q Consensus 26 l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 103 (302)
.++.+.|+.|++|++.. +....+..+. +.+....++++++ +++|+.+ ..++.|.+|++............. ..+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd--~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~ 80 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPD--KRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG 80 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCC--CCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC
Confidence 44457799999999953 2233445553 2344567888764 6776555 458889999986332233333332 233
Q ss_pred CeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCee-eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE-EE
Q 022111 104 SVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWD-TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL-AS 180 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~s 180 (302)
....++++|+ ++++++++ .++.|.+|++.+.+... ..... .+......+.++|++ +++ ++
T Consensus 81 ~p~~i~~~~~--g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g--------------~~l~v~ 143 (330)
T PRK11028 81 SPTHISTDHQ--GRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDN--------------RTLWVP 143 (330)
T ss_pred CceEEEECCC--CCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCC--------------CEEEEe
Confidence 5678999998 55566555 48899999986433211 11111 122223455666653 444 56
Q ss_pred eeCCCcEEEEEEecCccccccc--cccc-cCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEEEeccCCccee--eee-
Q 022111 181 CGCDNTVKVWKMYNGIWKMDCF--PALQ-MHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIWTCAKEGEQWE--GRV- 253 (302)
Q Consensus 181 ~~~D~~v~iwd~~~~~~~~~~~--~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iwd~~~~~~~~~--~~~- 253 (302)
...++.|.+||+.+.. .+... .... ........+.|+|++ +++.++.+ +++|.+|+++....... ..+
T Consensus 144 ~~~~~~v~v~d~~~~g-~l~~~~~~~~~~~~g~~p~~~~~~pdg----~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 144 CLKEDRIRLFTLSDDG-HLVAQEPAEVTTVEGAGPRHMVFHPNQ----QYAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred eCCCCEEEEEEECCCC-cccccCCCceecCCCCCCceEEECCCC----CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 6678999999997521 11100 0000 012335789999996 66666665 89999999974211111 011
Q ss_pred -e-ccCCC--cEEEEEEccCCCEEEEecCC--ceEEeeecCCc
Q 022111 254 -L-KDFKT--PVWSVSWSLTGNLLAVADAN--NVTLWKEAVDG 290 (302)
Q Consensus 254 -~-~~~~~--~v~~~~~spdg~~la~~~~d--~i~~w~~~~~~ 290 (302)
. ..... ....+.|+|+|++|.++.+. .|.+|+...++
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 0 11111 23358899999999888653 69999986544
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.3e-13 Score=125.00 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=135.3
Q ss_pred CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEE
Q 022111 32 DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSI 108 (302)
Q Consensus 32 d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l 108 (302)
+.+|.+||.+... ...+..|...+...+|+|+ |++|+.++.+ ..|.+||+.++.. ..+..+.+| ...+
T Consensus 183 ~~~i~i~d~dg~~---~~~lt~~~~~v~~p~wSPD--G~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~~~g~---~~~~ 253 (429)
T PRK01742 183 PYEVRVADYDGFN---QFIVNRSSQPLMSPAWSPD--GSKLAYVSFENKKSQLVVHDLRSGAR-KVVASFRGH---NGAP 253 (429)
T ss_pred eEEEEEECCCCCC---ceEeccCCCccccceEcCC--CCEEEEEEecCCCcEEEEEeCCCCce-EEEecCCCc---cCce
Confidence 4689999986533 3456678888999999875 8888887654 4699999876532 233334443 3468
Q ss_pred EecCCCCCcEEEEE-ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCc
Q 022111 109 AWAPHELGLSLACG-SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNT 186 (302)
Q Consensus 109 ~~~pd~~~~~l~sg-~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~ 186 (302)
+|+|| |..|+.+ +.++.+.||.+...+. ....+. .+...+..+.|+|++ +.|+ ++..++.
T Consensus 254 ~wSPD--G~~La~~~~~~g~~~Iy~~d~~~~-~~~~lt-~~~~~~~~~~wSpDG--------------~~i~f~s~~~g~ 315 (429)
T PRK01742 254 AFSPD--GSRLAFASSKDGVLNIYVMGANGG-TPSQLT-SGAGNNTEPSWSPDG--------------QSILFTSDRSGS 315 (429)
T ss_pred eECCC--CCEEEEEEecCCcEEEEEEECCCC-CeEeec-cCCCCcCCEEECCCC--------------CEEEEEECCCCC
Confidence 99998 6667665 4688877775542221 122332 344557788999874 4444 4456788
Q ss_pred EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEE
Q 022111 187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSW 266 (302)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 266 (302)
.+||++......... + .+.. .+.+|+||+ +.|+..+.++.+ +||+..... . .+...+ ...+++|
T Consensus 316 ~~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG----~~ia~~~~~~i~-~~Dl~~g~~--~-~lt~~~--~~~~~~~ 379 (429)
T PRK01742 316 PQVYRMSASGGGASL---V-GGRG--YSAQISADG----KTLVMINGDNVV-KQDLTSGST--E-VLSSTF--LDESPSI 379 (429)
T ss_pred ceEEEEECCCCCeEE---e-cCCC--CCccCCCCC----CEEEEEcCCCEE-EEECCCCCe--E-EecCCC--CCCCceE
Confidence 999988643211111 1 2333 457899996 678777776654 588765321 1 111122 2356789
Q ss_pred ccCCCEEEEecCC-ceEEeee
Q 022111 267 SLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 267 spdg~~la~~~~d-~i~~w~~ 286 (302)
+|||++|+.++.+ .+.+|..
T Consensus 380 sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 380 SPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEE
Confidence 9999999998776 6777764
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=9.2e-14 Score=129.79 Aligned_cols=251 Identities=18% Similarity=0.199 Sum_probs=155.6
Q ss_pred cceeEEEEc--cCCCEEEEeeCCCcEEEEeecCC---CceEEEE---ecCcc----cCeEEEEeeCCCCCCEEEEEeCCC
Q 022111 12 DTVHDVAMD--FYGKRLATASSDSSIKIIGLSNS---ASQHLAT---LKGHR----GPVWQVAWAHPKFGSILASCSYDG 79 (302)
Q Consensus 12 ~~v~~~~~s--~~~~~l~s~~~d~~v~lw~~~~~---~~~~~~~---~~~h~----~~v~~v~~~~~~~~~~l~s~s~D~ 79 (302)
..|+++.+- -|...+++|+.||.||||+-... +.+.+.. +.++. +.-.-+.|. ...|.++++| .-+
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tG-d~r 1187 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTG-DVR 1187 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecC-Cee
Confidence 457777763 23468899999999999974321 2222221 22221 111224553 2346555554 478
Q ss_pred eEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCC--eEEEE
Q 022111 80 QVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVG--VTSVS 156 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~--v~~~~ 156 (302)
.|+|||..... ..+.+. +-..-|+++.-.-. .|.++++|-.||.|++||.+....-........|... |..+.
T Consensus 1188 ~IRIWDa~~E~---~~~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~s 1263 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQ---VVADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLS 1263 (1387)
T ss_pred EEEEEecccce---eEeecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEE
Confidence 99999986532 222221 23345565543322 3679999999999999998854321222222356554 77777
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---CceeEEEeeCCCCCCccEEEEEec
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---DWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
+.+.+. ..|+||+.||.|++||++... . ....+...|. +..+++..+++. ..||+|+.
T Consensus 1264 lq~~G~-------------~elvSgs~~G~I~~~DlR~~~-~-e~~~~iv~~~~yGs~lTal~VH~ha----piiAsGs~ 1324 (1387)
T KOG1517|consen 1264 LQRQGL-------------GELVSGSQDGDIQLLDLRMSS-K-ETFLTIVAHWEYGSALTALTVHEHA----PIIASGSA 1324 (1387)
T ss_pred eecCCC-------------cceeeeccCCeEEEEecccCc-c-cccceeeeccccCccceeeeeccCC----CeeeecCc
Confidence 766431 369999999999999998631 1 1111222232 247889888874 78999998
Q ss_pred CCeEEEEEeccCCcc-ee--eeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 234 DGTVVIWTCAKEGEQ-WE--GRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 234 D~~i~iwd~~~~~~~-~~--~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
+.|+||++..+... .. ..++..-...+.+++|+|---+||+|..| .|.||....
T Consensus 1325 -q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred -ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 99999998753210 00 11112223457899999998889999888 699998643
No 201
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=4.2e-14 Score=124.86 Aligned_cols=221 Identities=21% Similarity=0.318 Sum_probs=144.2
Q ss_pred EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC
Q 022111 47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG 126 (302)
Q Consensus 47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~ 126 (302)
+-..+.||++.|++|+..+ .|.+||+|+.||++|||.+.++ .++.++. -.+.|.|++|+|...--.||.+-..
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp--~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~- 464 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDP--SGEWLASGSDDGTVRIWEIATG---RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE- 464 (733)
T ss_pred eeeeEeccCCeEEEEEecC--CcceeeecCCCCcEEEEEeecc---eEEEEEe-ecceeEEEEecCCCCceeEEEEecC-
Confidence 3456789999999999865 4899999999999999999886 4666655 4568999999998543344444333
Q ss_pred cEEEEEecCC--------------C-----------Ceeee---------eecccCCCCeEEEEeCCCCCCC--------
Q 022111 127 NISVFTATAD--------------G-----------GWDTT---------RIDQAHPVGVTSVSWAPAMAPG-------- 164 (302)
Q Consensus 127 ~v~~~~~~~~--------------~-----------~~~~~---------~~~~~h~~~v~~~~~~~~~~~~-------- 164 (302)
.+.|-+-.-+ . .|... .+...|...|+.+.|+..+.--
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 3333221000 0 01000 1112355667778886543210
Q ss_pred --ce--eecc-------------------cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111 165 --AL--VGLG-------------------LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221 (302)
Q Consensus 165 --~~--~~~~-------------------~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 221 (302)
++ +.+. +.+..-+|+.++ -+.|+|||+... .....+.....+|.+++.+|.|
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCCC
Confidence 00 0000 001122344444 356888887653 2233444456789999999985
Q ss_pred CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEee
Q 022111 222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
..|+.|+.|+.+.++|++-...++ ..+.-|...+.+|+|++.-.++++|+.| .+.++-
T Consensus 620 ----Dnli~gs~d~k~~WfDldlsskPy--k~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 620 ----DNLILGSYDKKMCWFDLDLSSKPY--KTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred ----CeEEEecCCCeeEEEEcccCcchh--HHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 679999999999999998654443 3446677889999999999999999998 677765
No 202
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.7e-13 Score=117.68 Aligned_cols=201 Identities=12% Similarity=0.184 Sum_probs=144.5
Q ss_pred ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCc-EEEEEecCCcEEEEEe
Q 022111 55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGL-SLACGSSDGNISVFTA 133 (302)
Q Consensus 55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~-~l~sg~~d~~v~~~~~ 133 (302)
.+.|++|.|.|. ..+|.+|+.|++++||-+.... -..++.+..-..+|.++.|.|+ |. .+++++.....+.||+
T Consensus 213 ~~~I~sv~FHp~--~plllvaG~d~~lrifqvDGk~-N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPT--APLLLVAGLDGTLRIFQVDGKV-NPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCC--CceEEEecCCCcEEEEEecCcc-ChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeec
Confidence 357999999653 5789999999999999885432 2345555556789999999997 55 8999999999999999
Q ss_pred cCCCCeeeeeecccCCC-CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce
Q 022111 134 TADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV 212 (302)
Q Consensus 134 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 212 (302)
.+..-..+..+. +++. .+.....+|+ +.+|+..|..|.|.|.-..++.+.. +++ -.+.|
T Consensus 288 e~ak~~k~~~~~-g~e~~~~e~FeVShd--------------~~fia~~G~~G~I~lLhakT~eli~----s~K-ieG~v 347 (514)
T KOG2055|consen 288 ETAKVTKLKPPY-GVEEKSMERFEVSHD--------------SNFIAIAGNNGHIHLLHAKTKELIT----SFK-IEGVV 347 (514)
T ss_pred cccccccccCCC-CcccchhheeEecCC--------------CCeEEEcccCceEEeehhhhhhhhh----eee-eccEE
Confidence 754322222222 3332 2344444554 4789999999999999888764332 221 35668
Q ss_pred eEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCc-eEEeee
Q 022111 213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKE 286 (302)
Q Consensus 213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~-i~~w~~ 286 (302)
.+++|+.++ ..|.+++.+|.|.+||++.+. ...+...+..-.-.+++.|++|.+||+|+..+ |.||+.
T Consensus 348 ~~~~fsSds----k~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 348 SDFTFSSDS----KELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred eeEEEecCC----cEEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 999999775 778888899999999998752 22233222223356788889999999998774 899995
No 203
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.1e-12 Score=120.70 Aligned_cols=243 Identities=19% Similarity=0.316 Sum_probs=155.7
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCC-CEEEEEeCCCeEEEEEcCCCCceeE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG-SILASCSYDGQVIIWKEGNQNDWTQ 94 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~s~D~~i~iwd~~~~~~~~~ 94 (302)
...|++|+++++.+ .+.+|.||...+ +.++..+.+|.+++..+.+.+.... .++.+++.||+|++||...+. .
T Consensus 21 ~avfSnD~k~l~~~-~~~~V~VyS~~T--g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~---L 94 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLC-TGNFVKVYSTAT--GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE---L 94 (792)
T ss_pred ccccccCCcEEEEe-eCCEEEEEecch--HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE---E
Confidence 35689999988865 467899998755 5677789999999999998764322 578899999999999986542 3
Q ss_pred EEEecCCCCCeeEEEecCCC------------CCcEEEE-----------------------------------------
Q 022111 95 AHTFNDHKSSVNSIAWAPHE------------LGLSLAC----------------------------------------- 121 (302)
Q Consensus 95 ~~~~~~h~~~i~~l~~~pd~------------~~~~l~s----------------------------------------- 121 (302)
++++.. ..++-.+.+.|.. ....+.+
T Consensus 95 lkt~~~-~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 95 LKTFDN-NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEec-CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 333221 1112222111100 0001111
Q ss_pred ---EecCCcEEEEEecCCCCeee--eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc
Q 022111 122 ---GSSDGNISVFTATADGGWDT--TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 122 ---g~~d~~v~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
.-.+..+.+|...+.. +.. ......|...+++.+++|. +.++|++-.||.|.+|.-....
T Consensus 174 ~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn--------------~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPN--------------ERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred EEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccc--------------cceEEEeccCCcEEEEeccccc
Confidence 1111122222222111 000 0111134444555555554 5899999999999999754311
Q ss_pred cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEe
Q 022111 197 WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVA 276 (302)
Q Consensus 197 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 276 (302)
..-.-...+.=|.+.|++++|+++| .+|.||+..+-+-+|.+.+.+. .++....++|..+.+|||++..++.
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G----~~LlSGG~E~VLv~Wq~~T~~k----qfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDG----AYLLSGGREGVLVLWQLETGKK----QFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred cccccceEEEecccccceeEEecCC----ceEeecccceEEEEEeecCCCc----ccccccCCeeEEEEEcCCCCeEEEE
Confidence 1111123445588899999999996 7799999999999999987653 4556678899999999999988887
Q ss_pred cCC-ceEEeeecC
Q 022111 277 DAN-NVTLWKEAV 288 (302)
Q Consensus 277 ~~d-~i~~w~~~~ 288 (302)
..| .|++-.+..
T Consensus 311 ~~DNqI~li~~~d 323 (792)
T KOG1963|consen 311 LEDNQIHLIKASD 323 (792)
T ss_pred ecCceEEEEeccc
Confidence 777 688887744
No 204
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3.1e-12 Score=105.38 Aligned_cols=237 Identities=16% Similarity=0.194 Sum_probs=145.6
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCe--EEEEeeCCCCCCEEEEEeC-------CCeEEE
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPV--WQVAWAHPKFGSILASCSY-------DGQVII 83 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~~~l~s~s~-------D~~i~i 83 (302)
...+++|+.|...++.|- |.-.|||+.+. .+......-+...+ .-+=|- .++||-.+. -..+.|
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P--~ke~~~r~~~~~G~~~veMLfR----~N~laLVGGg~~pky~pNkviI 79 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDP--FKESASRQFIDGGFKIVEMLFR----SNYLALVGGGSRPKYPPNKVII 79 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCc--hhhhhhhccccCchhhhhHhhh----hceEEEecCCCCCCCCCceEEE
Confidence 345589999988888765 55589998742 11111111111111 112221 356554443 247999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 162 (302)
||-... .++.++. -+.+|.++.+.++ +|+.. ..+.|.+|.....-. .+..++ ...+.+..+ ..|..
T Consensus 80 WDD~k~---~~i~el~-f~~~I~~V~l~r~----riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPkGlC~--~~~~~- 146 (346)
T KOG2111|consen 80 WDDLKE---RCIIELS-FNSEIKAVKLRRD----RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPKGLCS--LCPTS- 146 (346)
T ss_pred EecccC---cEEEEEE-eccceeeEEEcCC----eEEEE-ecCeEEEEEcCCChh-heeeeecccCCCceEe--ecCCC-
Confidence 994332 3555554 5788999999876 34433 578999998753211 112221 111222222 22321
Q ss_pred CCceeecccCCCceeEEE-eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe-EEEE
Q 022111 163 PGALVGLGLLDPVQKLAS-CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-VVIW 240 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-i~iw 240 (302)
+...||- |-.-|.|+|-|+...... ......+|.+.|.|++.+-+| ..+||+|..|+ ||||
T Consensus 147 -----------~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~G----t~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 147 -----------NKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQG----TLVATASTKGTLIRIF 209 (346)
T ss_pred -----------CceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCc----cEEEEeccCcEEEEEE
Confidence 1123333 334688999998754221 113457899999999999885 88999999997 9999
Q ss_pred EeccCCcceeeeeecc-CCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 241 TCAKEGEQWEGRVLKD-FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 241 d~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
|..+.... .++..+ ....|++++|||+..+||+++++ +++++...+
T Consensus 210 dt~~g~~l--~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 210 DTEDGTLL--QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EcCCCcEe--eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 98765322 222222 23579999999999999999888 799998754
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.2e-12 Score=107.01 Aligned_cols=233 Identities=20% Similarity=0.307 Sum_probs=149.8
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecC-cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKG-HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
-.+..++|++.-..+|++..|.+||+|+-+.. ....++. -...|++++|-|. .++-|+.|+.. -|.||......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst---~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST---CPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC---CCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCccc
Confidence 34667889887677889999999999986542 2223332 3457999999764 46677777664 58899753211
Q ss_pred c---------ee--EEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeC
Q 022111 91 D---------WT--QAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWA 158 (302)
Q Consensus 91 ~---------~~--~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 158 (302)
. .. .+....+| .+|+++.|++| |..+++++. |..|.|||..++....+.. .....++-+.|+
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwS 247 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccccc---cCCCceeeEEEc
Confidence 0 01 12233445 68999999998 678888775 5799999998765543332 234568889999
Q ss_pred CCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
|++ ..|+.+..|+..++|..... |.-.. ..-..+.|...+|+|.|. ..|.+.+..- +
T Consensus 248 Pdg--------------d~lfaAt~davfrlw~e~q~-wt~er---w~lgsgrvqtacWspcGs---fLLf~~sgsp--~ 304 (445)
T KOG2139|consen 248 PDG--------------DVLFAATCDAVFRLWQENQS-WTKER---WILGSGRVQTACWSPCGS---FLLFACSGSP--R 304 (445)
T ss_pred CCC--------------CEEEEecccceeeeehhccc-ceecc---eeccCCceeeeeecCCCC---EEEEEEcCCc--e
Confidence 974 78889999999999976532 21111 112234789999999972 3444444433 4
Q ss_pred EEEeccCCcc---------eeeeeecc------------CCCcEEEEEEccCCCEEEEecC
Q 022111 239 IWTCAKEGEQ---------WEGRVLKD------------FKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 239 iwd~~~~~~~---------~~~~~~~~------------~~~~v~~~~~spdg~~la~~~~ 278 (302)
++.+....+. +...+..+ -.+++-+++|.|.|++||+.-.
T Consensus 305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 4544321110 01111111 1256788999999999999843
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=6.7e-13 Score=116.11 Aligned_cols=163 Identities=21% Similarity=0.272 Sum_probs=106.6
Q ss_pred cceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC-CC
Q 022111 12 DTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG-NQ 89 (302)
Q Consensus 12 ~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~-~~ 89 (302)
..|+++.|-|.+ ..++.+-.+|.+++||... ....+..+|...+++..++.. .|.-. ..
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~------------~~~~t~p~~~~~k~~~~f~i~-------t~ksk~~r 280 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI------------VCGATAPSYQALKDGDQFAIL-------TSKSKKTR 280 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccc------------cccCCCCcccccCCCCeeEEe-------eeeccccC
Confidence 578888887644 3555566788888887521 111112222222234444321 22111 11
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
+ ++..+.--++.|+..+|+|| |.+||+.+.|+.+|||+..+.. +.-+-...-....|++|+|++
T Consensus 281 N---Pv~~w~~~~g~in~f~FS~D--G~~LA~VSqDGfLRvF~fdt~e---Llg~mkSYFGGLLCvcWSPDG-------- 344 (636)
T KOG2394|consen 281 N---PVARWHIGEGSINEFAFSPD--GKYLATVSQDGFLRIFDFDTQE---LLGVMKSYFGGLLCVCWSPDG-------- 344 (636)
T ss_pred C---ccceeEeccccccceeEcCC--CceEEEEecCceEEEeeccHHH---HHHHHHhhccceEEEEEcCCc--------
Confidence 1 23333334568999999997 8899999999999999876421 111111334568999999974
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeC
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 219 (302)
++|++||+|..|.||.+..+ +.+..-.||++||..|+|.|
T Consensus 345 ------KyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 345 ------KYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ------cEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecc
Confidence 99999999999999999876 34445578999999999987
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.50 E-value=1.9e-11 Score=116.23 Aligned_cols=260 Identities=17% Similarity=0.112 Sum_probs=156.6
Q ss_pred ccccccceeEEEEccC-CCEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe
Q 022111 7 ETGHEDTVHDVAMDFY-GKRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ 80 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~ 80 (302)
+..|+..|..++.++. +.+++|||.||+|++|+...- ......+..--...+.++.+.. .++.+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeEEEEcCCCe
Confidence 3457888888887654 589999999999999997421 1122223332355677777754 3789999999999
Q ss_pred EEEEEcCCCCc--e--eEEEEecCCC-CCe-eEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111 81 VIIWKEGNQND--W--TQAHTFNDHK-SSV-NSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS 154 (302)
Q Consensus 81 i~iwd~~~~~~--~--~~~~~~~~h~-~~i-~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~ 154 (302)
|++.++...+. . .+....+.++ +.+ ...+|......-.|+.+..-+.|..||.+........... ...+.|++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-LRHGLVTS 1200 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC-ccccceeE
Confidence 99999854211 1 1111122222 233 3334433321226777888889999998754221111111 22345888
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccc-ccCCCceeEEEeeCCCCCCccEEEEE-e
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL-QMHSDWVRSVAWAPNLGLPKSTIASA-S 232 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~-s 232 (302)
++-+|.. ..++.|+..|.+-+||++-+. .+... .++..+|+.+..+|-... ....+++ +
T Consensus 1201 i~idp~~--------------~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~-~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1201 IVIDPWC--------------NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQ-ESVSVSAGS 1261 (1431)
T ss_pred EEecCCc--------------eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCC-CceEEEecc
Confidence 8887753 689999999999999998542 11111 245678999888886421 1344444 4
Q ss_pred -cCCeEEEEEeccCCcceeeeee-----------c-----cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 233 -QDGTVVIWTCAKEGEQWEGRVL-----------K-----DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 233 -~D~~i~iwd~~~~~~~~~~~~~-----------~-----~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..+.|.+|++............ . ..........+..-+.++.+|+.| +|+.||.+.
T Consensus 1262 ~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1262 SSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred cCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 5778999998764321110000 0 001112233443345677777777 899999754
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=6.1e-14 Score=128.10 Aligned_cols=209 Identities=19% Similarity=0.267 Sum_probs=138.1
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
+..+.+|-..|+|+.|.. .|.++++|+.|..++||.+++. .++....+|.+.|+.++.+.+ ..++|+++.|..
T Consensus 183 ikrLlgH~naVyca~fDr--tg~~Iitgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDR--TGRYIITGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSN--NTMIAAASNDKV 255 (1113)
T ss_pred HHHHHhhhhheeeeeecc--ccceEeecCccceeeeeeccch---hhhccCCCCccccchhccchh--hhhhhhcccCce
Confidence 445679999999999953 4899999999999999997665 467788999999999999865 568999999999
Q ss_pred EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccccc
Q 022111 128 ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPALQ 206 (302)
Q Consensus 128 v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~~~ 206 (302)
|++|.+...... . +..+|+..|++++|+|. ++.+.||++++||.+ ....-......+.
T Consensus 256 IrvWrl~~~~pv--s-vLrghtgavtaiafsP~------------------~sss~dgt~~~wd~r~~~~~y~prp~~~~ 314 (1113)
T KOG0644|consen 256 IRVWRLPDGAPV--S-VLRGHTGAVTAIAFSPR------------------ASSSDDGTCRIWDARLEPRIYVPRPLKFT 314 (1113)
T ss_pred EEEEecCCCchH--H-HHhccccceeeeccCcc------------------ccCCCCCceEeccccccccccCCCCCCcc
Confidence 999988754332 2 33489999999999984 367789999999976 1100000000000
Q ss_pred cCCCceeEEEeeCCCC---------------------------------CCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111 207 MHSDWVRSVAWAPNLG---------------------------------LPKSTIASASQDGTVVIWTCAKEGEQWEGRV 253 (302)
Q Consensus 207 ~h~~~v~~v~~~p~~~---------------------------------~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 253 (302)
.++-+-++-|..++. -.....++.-.+..+++|++.... ..-.
T Consensus 315 -~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---l~H~ 390 (1113)
T KOG0644|consen 315 -EKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---LLHN 390 (1113)
T ss_pred -cccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---hhhh
Confidence 001111222211110 001223333344456666654321 1123
Q ss_pred eccCCCcEEEEEEccCC-CEEEEecCC-ceEEeeecC
Q 022111 254 LKDFKTPVWSVSWSLTG-NLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 254 ~~~~~~~v~~~~~spdg-~~la~~~~d-~i~~w~~~~ 288 (302)
+.+|...++.+.++|=+ ++..+++.| +..|||+.+
T Consensus 391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred hcccccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 35677889999999955 444677778 799999754
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=9.8e-13 Score=111.13 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=138.8
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC---ceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEec
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN---DWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSS 124 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~---~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~ 124 (302)
+.+.+|.+-|.+|.|+++ +..||+|+.|..+++|.+...- ..+++.... .|...|.|++|... ...|.+|..
T Consensus 50 KD~~~H~GCiNAlqFS~N--~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~ 125 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHN--DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGER 125 (609)
T ss_pred hhhhhhccccceeeeccC--CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCC
Confidence 356789999999999875 8999999999999999874321 112333322 35589999999764 458999999
Q ss_pred CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc
Q 022111 125 DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA 204 (302)
Q Consensus 125 d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~ 204 (302)
+++|.+-|+.+...+....-. .....|..+.-+|. ...|++.+.++.|.+||.+........ ..
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P~--------------DN~~~~~t~~~~V~~~D~Rd~~~~~~~-~~ 189 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANEN-NNRGDVYHMDQHPT--------------DNTLIVVTRAKLVSFIDNRDRQNPISL-VL 189 (609)
T ss_pred cceeEeeecccceeeeeeccc-CcccceeecccCCC--------------CceEEEEecCceEEEEeccCCCCCCce-ee
Confidence 999999998754333222100 11235666666654 267899999999999999875432221 11
Q ss_pred cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC---CcEEEEEEccCCCEEEEecCC
Q 022111 205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK---TPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~---~~v~~~~~spdg~~la~~~~d 279 (302)
+......-..+-|+|.. +..|++.+.-+.+-+||.+....... .....+.. ..-.++.|+|+|+++.+--+.
T Consensus 190 ~AN~~~~F~t~~F~P~~---P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPET---PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred ecCCCccceeeeecCCC---ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence 22233445678899975 68899999999999999986532210 00001111 123577888888877665433
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.4e-10 Score=95.78 Aligned_cols=180 Identities=14% Similarity=0.215 Sum_probs=121.6
Q ss_pred CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecC
Q 022111 33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP 112 (302)
Q Consensus 33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~p 112 (302)
.+|.|||=.. ..++..+. -..+|.+|++.+ +.|+..- +..|.+|...+.- +.++.+.....|-.-++.+|
T Consensus 75 NkviIWDD~k--~~~i~el~-f~~~I~~V~l~r----~riVvvl-~~~I~VytF~~n~--k~l~~~et~~NPkGlC~~~~ 144 (346)
T KOG2111|consen 75 NKVIIWDDLK--ERCIIELS-FNSEIKAVKLRR----DRIVVVL-ENKIYVYTFPDNP--KLLHVIETRSNPKGLCSLCP 144 (346)
T ss_pred ceEEEEeccc--CcEEEEEE-eccceeeEEEcC----CeEEEEe-cCeEEEEEcCCCh--hheeeeecccCCCceEeecC
Confidence 5689998332 33455553 356899999974 3555544 5689999886431 23344433333333566677
Q ss_pred CCCCcEEEE-EecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc-EEEE
Q 022111 113 HELGLSLAC-GSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT-VKVW 190 (302)
Q Consensus 113 d~~~~~l~s-g~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~-v~iw 190 (302)
......||. |-.-|+|+|-|+.....-.+..+ .+|...|.+++.+-+ |.++||+|..|+ ||||
T Consensus 145 ~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~--------------Gt~vATaStkGTLIRIF 209 (346)
T KOG2111|consen 145 TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQ--------------GTLVATASTKGTLIRIF 209 (346)
T ss_pred CCCceEEEcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCC--------------ccEEEEeccCcEEEEEE
Confidence 654444443 33458999998875432122334 389999999987654 589999999998 8899
Q ss_pred EEecCccccccccccc-c-CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 191 KMYNGIWKMDCFPALQ-M-HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 191 d~~~~~~~~~~~~~~~-~-h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
|..++. .+.++. | ....|.|++|||+. .+||.+|+-|++.||.++..
T Consensus 210 dt~~g~----~l~E~RRG~d~A~iy~iaFSp~~----s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 210 DTEDGT----LLQELRRGVDRADIYCIAFSPNS----SWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCc----EeeeeecCCchheEEEEEeCCCc----cEEEEEcCCCeEEEEEeecC
Confidence 998873 233332 2 34569999999995 78999999999999999864
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.46 E-value=4.5e-13 Score=115.26 Aligned_cols=234 Identities=17% Similarity=0.209 Sum_probs=163.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
.-+.+.++.+|++|+.||.-|-+..+|+.+... ...+.- ...|.++.|-+. .++ +++....-+.|||-. +
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v-~Etv~Dv~~LHn--eq~-~AVAQK~y~yvYD~~-G--- 200 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINV-METVRDVTFLHN--EQF-FAVAQKKYVYVYDNN-G--- 200 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee--eeeeeh-hhhhhhhhhhcc--hHH-HHhhhhceEEEecCC-C---
Confidence 446688999999999999999999999865432 223322 235888999763 344 455667789999843 2
Q ss_pred eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111 93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL 172 (302)
Q Consensus 93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 172 (302)
+.++.+..| ..|..+.|-|. ..+|++++..|.++.-|++.+.-. ..+. .....+..+.=+|.
T Consensus 201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklV--a~~~-t~~G~~~vm~qNP~------------ 262 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLV--ASIR-TGAGRTDVMKQNPY------------ 262 (545)
T ss_pred cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhh--HHHH-ccCCccchhhcCCc------------
Confidence 356666644 56899999997 558999999999998888754321 1111 11222333333342
Q ss_pred CCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee
Q 022111 173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR 252 (302)
Q Consensus 173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 252 (302)
+..+-.|...|+|.+|...... .+-.+-.|.++|.+|++.|+| .++||.+.|+.++|||++.-... .
T Consensus 263 --NaVih~GhsnGtVSlWSP~ske----PLvKiLcH~g~V~siAv~~~G----~YMaTtG~Dr~~kIWDlR~~~ql---~ 329 (545)
T KOG1272|consen 263 --NAVIHLGHSNGTVSLWSPNSKE----PLVKILCHRGPVSSIAVDRGG----RYMATTGLDRKVKIWDLRNFYQL---H 329 (545)
T ss_pred --cceEEEcCCCceEEecCCCCcc----hHHHHHhcCCCcceEEECCCC----cEEeecccccceeEeeecccccc---c
Confidence 3567788889999999976542 233345699999999999985 88999999999999999864321 1
Q ss_pred eeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCC
Q 022111 253 VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD 289 (302)
Q Consensus 253 ~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~ 289 (302)
.... ..+...++||.-| +||.+-++.+.||.....
T Consensus 330 t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 330 TYRT-PHPASNLSLSQKG-LLALSYGDHVQIWKDALK 364 (545)
T ss_pred eeec-CCCcccccccccc-ceeeecCCeeeeehhhhc
Confidence 1111 3467788998665 567776779999986443
No 212
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=7.1e-13 Score=106.55 Aligned_cols=147 Identities=24% Similarity=0.425 Sum_probs=106.8
Q ss_pred EEEEEeCCCeEEEEEcCCCC-------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC-CCeeee
Q 022111 71 ILASCSYDGQVIIWKEGNQN-------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD-GGWDTT 142 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~-------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~-~~~~~~ 142 (302)
+|+.|-++|.+.+||+..+. .++.......|..+|.++.+.+. ...=++|+.+..+..|.+... +..+..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCccccceeeeeccccCccccc
Confidence 46778899999999997642 12223345569999999999764 335677888888889987643 222111
Q ss_pred -eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCC
Q 022111 143 -RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL 221 (302)
Q Consensus 143 -~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 221 (302)
+....|+ .|..+..-|+ ++.+||+|-|+.||||..++. ..+..++-|++.|++++|+|+-
T Consensus 245 ~e~~lknp-Gv~gvrIRpD--------------~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 245 KEITLKNP-GVSGVRIRPD--------------GKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred ceEEecCC-CccceEEccC--------------CcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCC
Confidence 1111121 2344444443 589999999999999999875 4566788899999999999984
Q ss_pred CCCccEEEEEecCCeEEEEEe
Q 022111 222 GLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 222 ~~~~~~l~s~s~D~~i~iwd~ 242 (302)
..+|++|.|+.|.+|++
T Consensus 306 ----~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 306 ----ELMAAASKDARISLWKL 322 (323)
T ss_pred ----chhhhccCCceEEeeec
Confidence 67999999999999986
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=4.8e-11 Score=108.14 Aligned_cols=219 Identities=19% Similarity=0.201 Sum_probs=131.4
Q ss_pred ccccceeEEEEccCCCEEEEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCC--eEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDG--QVI 82 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~--~i~ 82 (302)
.+...+...+|+|||+.|+..+. +..+.+|++..+..+.+..+.+| +..++|+|+ |+.|+.. +.++ .|.
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~---~~~~~~SPD--G~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH---NGAPAFSPD--GSKLAFALSKTGSLNLY 270 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC---cCCeEECCC--CCEEEEEEcCCCCcEEE
Confidence 45567888999999998886542 35688888865443444444444 446789874 7766643 4455 477
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
+||+.++. ...+..+...+....|+|| |..|+..+. ++...+|.+...+. ....+. .+........|+|++
T Consensus 271 ~~d~~tg~----~~~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~~Iy~~d~~~g-~~~~lt-~~~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQ----IRQVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRPQVYKVNINGG-APQRIT-WEGSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCC----EEEccCCCCCcCceEECCC--CCEEEEEeCCCCCceEEEEECCCC-CeEEee-cCCCCccCEEECCCC
Confidence 88886642 2344445556788999998 666766665 45556665432221 111221 122234567788864
Q ss_pred CCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe--
Q 022111 162 APGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-- 236 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-- 236 (302)
+.|+..+.+ ..|.+||+.++.. .. +.. .....+.+|+||+ ..|+..+.++.
T Consensus 343 --------------~~Ia~~~~~~g~~~I~~~dl~~g~~--~~---Lt~-~~~~~~p~~SpDG----~~i~~~s~~~~~~ 398 (429)
T PRK03629 343 --------------KFMVMVSSNGGQQHIAKQDLATGGV--QV---LTD-TFLDETPSIAPNG----TMVIYSSSQGMGS 398 (429)
T ss_pred --------------CEEEEEEccCCCceEEEEECCCCCe--EE---eCC-CCCCCCceECCCC----CEEEEEEcCCCce
Confidence 555554432 3578888876532 11 111 1123467899996 77888887775
Q ss_pred -EEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 237 -VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 237 -i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
+.++++.... ...+..+.+.+...+|||
T Consensus 399 ~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 399 VLNLVSTDGRF----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence 5566654321 122345566778888887
No 214
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=8.7e-09 Score=90.88 Aligned_cols=263 Identities=13% Similarity=0.151 Sum_probs=158.0
Q ss_pred eEEEEccCCCEEEEeeC----CCcEEEEeecCC--CceEEEEecCcccCeEEEEeeCCCCCCEEEEEe-CCCeEEEEEcC
Q 022111 15 HDVAMDFYGKRLATASS----DSSIKIIGLSNS--ASQHLATLKGHRGPVWQVAWAHPKFGSILASCS-YDGQVIIWKEG 87 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~----d~~v~lw~~~~~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~D~~i~iwd~~ 87 (302)
.-+++++++++|.+... ++.|..|.+... ..+.+.........-..++++++ +++|+++. .++++.++++.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEcc
Confidence 34788999999998876 468999998754 33344443322233456888654 67766665 59999999997
Q ss_pred CCCceeEE-EEec----------CCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCC-Ceee-eeecccCCCCeE
Q 022111 88 NQNDWTQA-HTFN----------DHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADG-GWDT-TRIDQAHPVGVT 153 (302)
Q Consensus 88 ~~~~~~~~-~~~~----------~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~-~~~~-~~~~~~h~~~v~ 153 (302)
........ ..+. .-....-++.++|+ +++++... ....|.+|++.... .+.. ..+.......-+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 64322222 1121 11234558899998 55555543 34589999987543 2221 122223344568
Q ss_pred EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc---cc-cc--CCCceeEEEeeCCCCCCccE
Q 022111 154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP---AL-QM--HSDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---~~-~~--h~~~v~~v~~~p~~~~~~~~ 227 (302)
.+.|+|++ ...++.+-.+++|.++++......++..+ .+ .+ .......|.++||+ ...
T Consensus 196 h~~f~pdg-------------~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg---~~l 259 (345)
T PF10282_consen 196 HLAFSPDG-------------KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG---RFL 259 (345)
T ss_dssp EEEE-TTS-------------SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS---SEE
T ss_pred EEEEcCCc-------------CEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCC---CEE
Confidence 89998864 24556677789999999983211222111 11 01 12257889999997 234
Q ss_pred EEEEecCCeEEEEEeccCCcce-eeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEeee
Q 022111 228 IASASQDGTVVIWTCAKEGEQW-EGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVSV 297 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~~ 297 (302)
.++...+.+|.+|+++...... ..............++++|+|++|+++..+ .|.+|+. ...|.+.....
T Consensus 260 yvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp EEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecc
Confidence 5566678899999995432111 111112223447899999999999999765 6999998 46788877653
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.1e-10 Score=106.22 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=124.2
Q ss_pred CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCCCeeEEE
Q 022111 33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109 (302)
Q Consensus 33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~ 109 (302)
..|.++|.... ....+..|...+...+|+|+ |+.|+..+. +..|.+||+.++. ...+..+.+.+...+
T Consensus 182 ~~l~~~d~dg~---~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g~----~~~l~~~~g~~~~~~ 252 (435)
T PRK05137 182 KRLAIMDQDGA---NVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETGQ----RELVGNFPGMTFAPR 252 (435)
T ss_pred eEEEEECCCCC---CcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCCc----EEEeecCCCcccCcE
Confidence 36777776543 23456677888999999874 788877663 4689999997653 223445666778899
Q ss_pred ecCCCCCcEE-EEEecCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC
Q 022111 110 WAPHELGLSL-ACGSSDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN 185 (302)
Q Consensus 110 ~~pd~~~~~l-~sg~~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~ 185 (302)
|+|| |..| ++.+.++. |.+||+.... ...+. .+........|+|++ +.|+..+ .++
T Consensus 253 ~SPD--G~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt-~~~~~~~~~~~spDG--------------~~i~f~s~~~g 312 (435)
T PRK05137 253 FSPD--GRKVVMSLSQGGNTDIYTMDLRSGT---TTRLT-DSPAIDTSPSYSPDG--------------SQIVFESDRSG 312 (435)
T ss_pred ECCC--CCEEEEEEecCCCceEEEEECCCCc---eEEcc-CCCCccCceeEcCCC--------------CEEEEEECCCC
Confidence 9998 5555 45666666 4455654322 12222 233445668898864 5555444 333
Q ss_pred --cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCCc
Q 022111 186 --TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKTP 260 (302)
Q Consensus 186 --~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (302)
.|+++|+.++. ...+..+...+....|+||+ +.|+..+.+ ..|.+||+..... ..+.. ...
T Consensus 313 ~~~Iy~~d~~g~~-----~~~lt~~~~~~~~~~~SpdG----~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt~-~~~ 378 (435)
T PRK05137 313 SPQLYVMNADGSN-----PRRISFGGGRYSTPVWSPRG----DLIAFTKQGGGQFSIGVMKPDGSGE----RILTS-GFL 378 (435)
T ss_pred CCeEEEEECCCCC-----eEEeecCCCcccCeEECCCC----CEEEEEEcCCCceEEEEEECCCCce----EeccC-CCC
Confidence 57777765542 11222234456778999996 667666543 2577777643211 12211 224
Q ss_pred EEEEEEccCCCEEEEecC
Q 022111 261 VWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 261 v~~~~~spdg~~la~~~~ 278 (302)
+.+.+|+|||+.|+....
T Consensus 379 ~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCeECCCCCEEEEEEc
Confidence 667899999999887644
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=2.1e-11 Score=98.29 Aligned_cols=109 Identities=17% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeE--EEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKL--ASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS 226 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l--~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 226 (302)
..+|..++|+|++ ..| ++|..++.|.|||++. ..+..+ +...++.|.|+|+| +
T Consensus 59 ~~~I~~~~WsP~g--------------~~favi~g~~~~~v~lyd~~~-----~~i~~~--~~~~~n~i~wsP~G----~ 113 (194)
T PF08662_consen 59 EGPIHDVAWSPNG--------------NEFAVIYGSMPAKVTLYDVKG-----KKIFSF--GTQPRNTISWSPDG----R 113 (194)
T ss_pred CCceEEEEECcCC--------------CEEEEEEccCCcccEEEcCcc-----cEeEee--cCCCceEEEECCCC----C
Confidence 4469999999975 343 3345678999999963 222333 35678999999996 7
Q ss_pred EEEEEec---CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC------C-ceEEeeec
Q 022111 227 TIASASQ---DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA------N-NVTLWKEA 287 (302)
Q Consensus 227 ~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------d-~i~~w~~~ 287 (302)
+|+.++. .|.|.+||++... .+.......+..++|||||++|+++.. | +++||+..
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~-----~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKK-----KISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCE-----EeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 7888764 4679999998432 122222234789999999999998853 4 79999974
No 217
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.7e-10 Score=104.66 Aligned_cols=221 Identities=20% Similarity=0.255 Sum_probs=130.0
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~ 110 (302)
.+.++|.... ....+..+...+.+.+|+|+ |+.|+..+.+ ..|.+||+.++.. ..+....+.+...+|
T Consensus 177 ~L~~~D~dG~---~~~~l~~~~~~v~~p~wSPD--G~~la~~s~~~~~~~I~~~dl~~g~~----~~l~~~~g~~~~~~~ 247 (427)
T PRK02889 177 QLQISDADGQ---NAQSALSSPEPIISPAWSPD--GTKLAYVSFESKKPVVYVHDLATGRR----RVVANFKGSNSAPAW 247 (427)
T ss_pred EEEEECCCCC---CceEeccCCCCcccceEcCC--CCEEEEEEccCCCcEEEEEECCCCCE----EEeecCCCCccceEE
Confidence 4555565432 23345567778899999874 7888776643 4589999876532 122233445678899
Q ss_pred cCCCCCcEEE-EEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCCcEE
Q 022111 111 APHELGLSLA-CGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDNTVK 188 (302)
Q Consensus 111 ~pd~~~~~l~-sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~~v~ 188 (302)
+|| |..|+ +.+.++...||.....+.. ...+. .+........|+|++ +.|+..+ .++...
T Consensus 248 SPD--G~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG--------------~~l~f~s~~~g~~~ 309 (427)
T PRK02889 248 SPD--GRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDG--------------RSIYFTSDRGGAPQ 309 (427)
T ss_pred CCC--CCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCC--------------CEEEEEecCCCCcE
Confidence 998 55555 5677888888876532221 12222 233345567899874 5555444 456777
Q ss_pred EEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCcEEEEE
Q 022111 189 VWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTPVWSVS 265 (302)
Q Consensus 189 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 265 (302)
||.+.........+ ++. .......+|+||+ +.|+..+.++ .|.+||+..... ..+.. .....+.+
T Consensus 310 Iy~~~~~~g~~~~l-t~~--g~~~~~~~~SpDG----~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~ 377 (427)
T PRK02889 310 IYRMPASGGAAQRV-TFT--GSYNTSPRISPDG----KLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPS 377 (427)
T ss_pred EEEEECCCCceEEE-ecC--CCCcCceEECCCC----CEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCce
Confidence 77765221111111 122 2334467899996 6777766554 699999865321 11221 12345789
Q ss_pred EccCCCEEEEecCC--ceEEeeecCCceEE
Q 022111 266 WSLTGNLLAVADAN--NVTLWKEAVDGEWQ 293 (302)
Q Consensus 266 ~spdg~~la~~~~d--~i~~w~~~~~~~~~ 293 (302)
|+|||++|+.+..+ .-.++-+..+|...
T Consensus 378 ~spdg~~l~~~~~~~g~~~l~~~~~~g~~~ 407 (427)
T PRK02889 378 FAPNGRYILYATQQGGRSVLAAVSSDGRIK 407 (427)
T ss_pred ECCCCCEEEEEEecCCCEEEEEEECCCCce
Confidence 99999999888654 23455554455533
No 218
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=6.5e-11 Score=98.74 Aligned_cols=253 Identities=17% Similarity=0.267 Sum_probs=163.8
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCC-c--eEEEEecCcc------------cCeEEEEeeCCCCCCEEEEEe
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA-S--QHLATLKGHR------------GPVWQVAWAHPKFGSILASCS 76 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~-~--~~~~~~~~h~------------~~v~~v~~~~~~~~~~l~s~s 76 (302)
+.+.++-|+-+|.+||+|..+|.|-++.-+... . .....+..|+ ..|..++|..+.....+....
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457788999999999999999999999753221 1 1223344443 457788997765555666778
Q ss_pred CCCeEEEEEcCCCCc--------------------------------eeEEEEe-cCCCCCeeEEEecCCCCCcEEEEEe
Q 022111 77 YDGQVIIWKEGNQND--------------------------------WTQAHTF-NDHKSSVNSIAWAPHELGLSLACGS 123 (302)
Q Consensus 77 ~D~~i~iwd~~~~~~--------------------------------~~~~~~~-~~h~~~i~~l~~~pd~~~~~l~sg~ 123 (302)
.|++|++|.+..... ..+...+ ..|.--|+++.++.| +..+++ +
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD--~Et~lS-A 182 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD--KETFLS-A 182 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc--cceEee-c
Confidence 999999998753221 0111122 357778999999887 445665 4
Q ss_pred cCCcEEEEEecC-CCCeeeeeecccCC-----CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc
Q 022111 124 SDGNISVFTATA-DGGWDTTRIDQAHP-----VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW 197 (302)
Q Consensus 124 ~d~~v~~~~~~~-~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~ 197 (302)
+|-.|.+|.+.- +..+.+..+. .+. .-|++..|+|.. ...|+-.+..|+|+|-|++....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIK-P~nmEeLteVITsaEFhp~~-------------cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIK-PANMEELTEVITSAEFHPHH-------------CNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred cceeeeeccccccCCceeEEEcc-ccCHHHHHHHHhhhccCHhH-------------ccEEEEecCCCcEEEeechhhhh
Confidence 688999998863 3345555443 332 247788888864 35788888899999999984311
Q ss_pred -----cccccc-------ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc---------
Q 022111 198 -----KMDCFP-------ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--------- 256 (302)
Q Consensus 198 -----~~~~~~-------~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--------- 256 (302)
++-..+ -|.+--..|.++.|+++| +++++-+. -+|++||+..+..+.....+.+
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG----ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG----RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCC----cEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHH
Confidence 100000 011122358899999985 77887643 4799999966543321111111
Q ss_pred C-CCc---EEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 257 F-KTP---VWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 257 ~-~~~---v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
+ .+. -..++||-++.++.+|+=+ ..++++.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 1 112 2368999999999999766 5888884
No 219
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.41 E-value=1.7e-12 Score=113.58 Aligned_cols=96 Identities=26% Similarity=0.411 Sum_probs=79.5
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
++.|..++|++||++||+.+.||.+||+++... +.+..++.--+...|++|+|+ |++|++|++|-.|.+|.+.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~er- 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--ELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFEER- 364 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHH--HHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEeccc-
Confidence 347889999999999999999999999999753 333445555577899999975 999999999999999998765
Q ss_pred ceeEEEEecCCCCCeeEEEecCC
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPH 113 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd 113 (302)
+.+..=.+|+.-|+.|+|.|.
T Consensus 365 --RVVARGqGHkSWVs~VaFDpy 385 (636)
T KOG2394|consen 365 --RVVARGQGHKSWVSVVAFDPY 385 (636)
T ss_pred --eEEEeccccccceeeEeeccc
Confidence 245555689999999999763
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=5.5e-12 Score=109.28 Aligned_cols=217 Identities=19% Similarity=0.242 Sum_probs=152.9
Q ss_pred EEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111 49 ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128 (302)
Q Consensus 49 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v 128 (302)
..|..|.+-|..|.|.. .|+.|+|+|.|.++.+||...... .+.-..+|...|....|-|......+++++.||.+
T Consensus 136 ~kL~~H~GcVntV~FN~--~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQ--RGDVLASGSDDLQVVVWDWVSGSP--KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hcccCCCCccceeeecc--cCceeeccCccceEEeehhhccCc--ccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 46788999999999975 489999999999999999866542 22223468888888888887655679999999999
Q ss_pred EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccC
Q 022111 129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH 208 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h 208 (302)
++=.+...+..........|...|..++.-|.. -.-|.|||.|+.+.=+|++...-..... +-..+
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s-------------p~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~ 277 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDS-------------PKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREAD 277 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCC-------------CCcccccccccceeeeeeccCCccceee-eeccC
Confidence 987665544443222223677778777776653 2568999999999999998753221211 22233
Q ss_pred CC---ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce---------eeeeeccCCCcEEEEEEccCC-CEEEE
Q 022111 209 SD---WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW---------EGRVLKDFKTPVWSVSWSLTG-NLLAV 275 (302)
Q Consensus 209 ~~---~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~---------~~~~~~~~~~~v~~~~~spdg-~~la~ 275 (302)
+. ..++++.+|.. .+.+++|+.|..+|+||.+.-.... ...+..+....|.+++||.+| .+||+
T Consensus 278 ~~~~v~L~~Ia~~P~n---t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN---TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred CccceeeeeEecCCCC---ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 33 46788888864 4689999999999999987532110 001112344568999999766 55565
Q ss_pred ecCCceEEeee
Q 022111 276 ADANNVTLWKE 286 (302)
Q Consensus 276 ~~~d~i~~w~~ 286 (302)
-.+..|.|+.-
T Consensus 355 YnDe~IYLF~~ 365 (559)
T KOG1334|consen 355 YNDEDIYLFNK 365 (559)
T ss_pred ecccceEEecc
Confidence 55558999953
No 221
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=6.6e-11 Score=100.07 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=132.6
Q ss_pred CEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--CeEEEEEcCCCCceeEEEEec
Q 022111 24 KRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--GQVIIWKEGNQNDWTQAHTFN 99 (302)
Q Consensus 24 ~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~ 99 (302)
..|.+|-.+|.+++|....+. ...+..+.-|. .+..+.-. +....++|+|+.. ..++|||++... ++.+-+
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~-g~~~~r~~-~~~p~Iva~GGke~~n~lkiwdle~~~---qiw~aK 190 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP-GLYDVRQT-DTDPYIVATGGKENINELKIWDLEQSK---QIWSAK 190 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecCC-ceeeeccC-CCCCceEecCchhcccceeeeecccce---eeeecc
Confidence 467788899999999875322 12333444343 45666654 3456788899999 889999986542 222111
Q ss_pred C-CC--------CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 100 D-HK--------SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 100 ~-h~--------~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
. .+ -.++++.|-|......+|++..-+++++||.+.+. .....+. --+.+++++...|
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd-~~E~~is~~~l~p----------- 257 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFD-FLENPISSTGLTP----------- 257 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEec-cccCcceeeeecC-----------
Confidence 1 01 13467788766445689999999999999987432 1222221 1133455554444
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.+.++++|-.-+.+..||++.+.. ....+.+-.+.|++|..+|.+ ..+|+++-|+.+||+|++++
T Consensus 258 ---~gn~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~----~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 258 ---SGNFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTH----PVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ---CCcEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCC----ceEEeeccceeEEEeecccc
Confidence 357899999999999999998632 123467788899999999985 68999999999999999864
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.8e-10 Score=104.40 Aligned_cols=223 Identities=21% Similarity=0.229 Sum_probs=130.1
Q ss_pred cccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCeEEE
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQVII 83 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~i~i 83 (302)
..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++....+. ...+.+...+|+|+ |+.|+ +.+.++...|
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPD--G~~la~~~~~~g~~~I 266 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPD--GRTLAVALSRDGNSQI 266 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCC--CCEEEEEEccCCCceE
Confidence 3566788899999999999877643 34899998765433332 23344567899875 66654 6778888888
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecCCC-CeeeeeecccCCCCeEEEEeCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATADG-GWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
|.++... .....+..+........|+|| |..|+..+. ++...+|.+...+ ....... +........|+|++
T Consensus 267 y~~d~~~--~~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~---~g~~~~~~~~SpDG 339 (427)
T PRK02889 267 YTVNADG--SGLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIYRMPASGGAAQRVTF---TGSYNTSPRISPDG 339 (427)
T ss_pred EEEECCC--CCcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEEEEECCCCceEEEec---CCCCcCceEECCCC
Confidence 8763221 123445555556677889998 666665554 5677777665322 2211111 11223356788864
Q ss_pred CCCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC-eE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG-TV 237 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~-~i 237 (302)
+.|+..+.++ .|.+||+.++... .+.. .......+|+||+ +.|+..+.++ .-
T Consensus 340 --------------~~Ia~~s~~~g~~~I~v~d~~~g~~~-----~lt~-~~~~~~p~~spdg----~~l~~~~~~~g~~ 395 (427)
T PRK02889 340 --------------KLLAYISRVGGAFKLYVQDLATGQVT-----ALTD-TTRDESPSFAPNG----RYILYATQQGGRS 395 (427)
T ss_pred --------------CEEEEEEccCCcEEEEEEECCCCCeE-----EccC-CCCccCceECCCC----CEEEEEEecCCCE
Confidence 6666655443 5899998765321 1211 1234678999996 5666666544 32
Q ss_pred EEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 238 VIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 238 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
.++-+...+.. ...+....+.+...+|||
T Consensus 396 ~l~~~~~~g~~--~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 396 VLAAVSSDGRI--KQRLSVQGGDVREPSWGP 424 (427)
T ss_pred EEEEEECCCCc--eEEeecCCCCCCCCccCC
Confidence 33332221111 112223344566677876
No 223
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=2.3e-10 Score=96.29 Aligned_cols=187 Identities=17% Similarity=0.244 Sum_probs=125.3
Q ss_pred CEEEEeeCC--CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111 24 KRLATASSD--SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH 101 (302)
Q Consensus 24 ~~l~s~~~d--~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 101 (302)
..+|..+.+ +.++++++.....-+-..+ ..+|.+|+++. ++|+.+-++. |.|||+++. +.++++..-
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f---pt~IL~VrmNr----~RLvV~Lee~-IyIydI~~M---klLhTI~t~ 125 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFF---PTSILAVRMNR----KRLVVCLEES-IYIYDIKDM---KLLHTIETT 125 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEec---CCceEEEEEcc----ceEEEEEccc-EEEEecccc---eeehhhhcc
Confidence 445544443 4477777654332222222 34688898853 5677777765 999999876 356665543
Q ss_pred -CCCeeEEEecCCCCCcEEEEE--ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE
Q 022111 102 -KSSVNSIAWAPHELGLSLACG--SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL 178 (302)
Q Consensus 102 -~~~i~~l~~~pd~~~~~l~sg--~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 178 (302)
..+-.-++++|+..+-+||.= ...|.|.+||...- .....+. .|...+.+++|+++ |.+|
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl--~~v~~I~-aH~~~lAalafs~~--------------G~ll 188 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL--QPVNTIN-AHKGPLAALAFSPD--------------GTLL 188 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccc--eeeeEEE-ecCCceeEEEECCC--------------CCEE
Confidence 223335566665434456543 23589999998643 2234444 89999999999987 4899
Q ss_pred EEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 179 ASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 179 ~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
||++..|+ |||+.+.+++...+.-+.. -...|.+++|+|+. .+|++.|..++|.||.+..
T Consensus 189 ATASeKGTVIRVf~v~~G~kl~eFRRG~--~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 189 ATASEKGTVIRVFSVPEGQKLYEFRRGT--YPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEeccCceEEEEEEcCCccEeeeeeCCc--eeeEEEEEEECCCC----CeEEEecCCCeEEEEEecc
Confidence 99999998 7899998875322221211 14569999999995 7899999999999999865
No 224
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=1.5e-10 Score=93.25 Aligned_cols=149 Identities=21% Similarity=0.444 Sum_probs=98.6
Q ss_pred EEEEccCCCEEEEeeC---C-------CcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEE--EeCCCeEE
Q 022111 16 DVAMDFYGKRLATASS---D-------SSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILAS--CSYDGQVI 82 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~---d-------~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s--~s~D~~i~ 82 (302)
.+.|++.|++|+.-.. | +...||-+..... .+..+. ...++|.+++|+|+ |+.+|. |..++.+.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcC--CCEEEEEEccCCcccE
Confidence 4678999987765443 1 2355555533221 222332 23457999999875 666544 45678999
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC---CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD---GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d---~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+||++. ..+..+ +...++.+.|+|+ |.+|++++.+ |.+.+||.++.. .+... .| ..++.++|+|
T Consensus 87 lyd~~~----~~i~~~--~~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~~wd~~~~~--~i~~~--~~-~~~t~~~WsP 153 (194)
T PF08662_consen 87 LYDVKG----KKIFSF--GTQPRNTISWSPD--GRFLVLAGFGNLNGDLEFWDVRKKK--KISTF--EH-SDATDVEWSP 153 (194)
T ss_pred EEcCcc----cEeEee--cCCCceEEEECCC--CCEEEEEEccCCCcEEEEEECCCCE--Eeecc--cc-CcEEEEEEcC
Confidence 999852 344454 4567899999998 7788888754 569999987431 12221 23 3478999999
Q ss_pred CCCCCceeecccCCCceeEEEeeC------CCcEEEEEEec
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGC------DNTVKVWKMYN 194 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~------D~~v~iwd~~~ 194 (302)
++ ++|++++. |+.++||+...
T Consensus 154 dG--------------r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DG--------------RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CC--------------CEEEEEEeccceeccccEEEEEecC
Confidence 74 78888764 78899999854
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=6.8e-10 Score=100.68 Aligned_cols=203 Identities=18% Similarity=0.227 Sum_probs=120.3
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe---CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS---YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~ 110 (302)
.|.++|.+.... ..+..+...+...+|+|+ |+.|+..+ .+..+.+|++.++.. ..+..+ .+.+....|
T Consensus 180 ~l~~~d~dg~~~---~~lt~~~~~~~~p~wSPD--G~~la~~s~~~g~~~i~i~dl~~G~~-~~l~~~---~~~~~~~~~ 250 (429)
T PRK03629 180 ELRVSDYDGYNQ---FVVHRSPQPLMSPAWSPD--GSKLAYVTFESGRSALVIQTLANGAV-RQVASF---PRHNGAPAF 250 (429)
T ss_pred eEEEEcCCCCCC---EEeecCCCceeeeEEcCC--CCEEEEEEecCCCcEEEEEECCCCCe-EEccCC---CCCcCCeEE
Confidence 677888765332 234445667899999875 78877654 345788999866431 222223 334557899
Q ss_pred cCCCCCcEEEEE-ecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCc
Q 022111 111 APHELGLSLACG-SSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNT 186 (302)
Q Consensus 111 ~pd~~~~~l~sg-~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~ 186 (302)
+|| |..|+.. +.++ .|.+||+.... . ..+. .+...+....|+|++ +.|+..+. ++.
T Consensus 251 SPD--G~~La~~~~~~g~~~I~~~d~~tg~-~--~~lt-~~~~~~~~~~wSPDG--------------~~I~f~s~~~g~ 310 (429)
T PRK03629 251 SPD--GSKLAFALSKTGSLNLYVMDLASGQ-I--RQVT-DGRSNNTEPTWFPDS--------------QNLAYTSDQAGR 310 (429)
T ss_pred CCC--CCEEEEEEcCCCCcEEEEEECCCCC-E--EEcc-CCCCCcCceEECCCC--------------CEEEEEeCCCCC
Confidence 998 5566644 4444 47777775432 1 2222 223456778999874 55655544 455
Q ss_pred EEEEEE--ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCCcE
Q 022111 187 VKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKTPV 261 (302)
Q Consensus 187 v~iwd~--~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~~v 261 (302)
.+||.+ .++. ...+..+.....+..|+||+ +.|+..+.+ ..|.+||+..... ..+... ...
T Consensus 311 ~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG----~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~~-~~~ 376 (429)
T PRK03629 311 PQVYKVNINGGA-----PQRITWEGSQNQDADVSSDG----KFMVMVSSNGGQQHIAKQDLATGGV----QVLTDT-FLD 376 (429)
T ss_pred ceEEEEECCCCC-----eEEeecCCCCccCEEECCCC----CEEEEEEccCCCceEEEEECCCCCe----EEeCCC-CCC
Confidence 566644 4332 11222233445678999996 566665443 3577888765321 122211 123
Q ss_pred EEEEEccCCCEEEEecCC
Q 022111 262 WSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 262 ~~~~~spdg~~la~~~~d 279 (302)
.+.+|||||++|+.++.+
T Consensus 377 ~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCceECCCCCEEEEEEcC
Confidence 467899999999888765
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=4.4e-10 Score=102.20 Aligned_cols=211 Identities=17% Similarity=0.224 Sum_probs=124.0
Q ss_pred CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCCCceeEEEEecCCCCCeeEEE
Q 022111 33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIA 109 (302)
Q Consensus 33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~ 109 (302)
.+|.+||..... ...+..|...+...+|+|+ |+.|+.++. +..|.+||+.++.. ..+....+...+.+
T Consensus 184 ~~l~i~D~~g~~---~~~lt~~~~~v~~p~wSpD--g~~la~~s~~~~~~~l~~~dl~~g~~----~~l~~~~g~~~~~~ 254 (433)
T PRK04922 184 YALQVADSDGYN---PQTILRSAEPILSPAWSPD--GKKLAYVSFERGRSAIYVQDLATGQR----ELVASFRGINGAPS 254 (433)
T ss_pred EEEEEECCCCCC---ceEeecCCCccccccCCCC--CCEEEEEecCCCCcEEEEEECCCCCE----EEeccCCCCccCce
Confidence 358888875432 2345566778889999874 788887764 34699999876532 22333444556889
Q ss_pred ecCCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC
Q 022111 110 WAPHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN 185 (302)
Q Consensus 110 ~~pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~ 185 (302)
|+|| |..|+ +.+.++ .|.+|++.... . ..+. .+......+.|+|++ +.|+.++ .++
T Consensus 255 ~SpD--G~~l~~~~s~~g~~~Iy~~d~~~g~-~--~~lt-~~~~~~~~~~~spDG--------------~~l~f~sd~~g 314 (433)
T PRK04922 255 FSPD--GRRLALTLSRDGNPEIYVMDLGSRQ-L--TRLT-NHFGIDTEPTWAPDG--------------KSIYFTSDRGG 314 (433)
T ss_pred ECCC--CCEEEEEEeCCCCceEEEEECCCCC-e--EECc-cCCCCccceEECCCC--------------CEEEEEECCCC
Confidence 9998 54554 555555 47777775432 1 2222 333344567898864 5555554 455
Q ss_pred c--EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCc
Q 022111 186 T--VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTP 260 (302)
Q Consensus 186 ~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (302)
. |+++|+.++.. . .+..+.......+|+||+ +.|+..+.++ .|.+||+..... ..+.. ...
T Consensus 315 ~~~iy~~dl~~g~~--~---~lt~~g~~~~~~~~SpDG----~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt~-~~~ 380 (433)
T PRK04922 315 RPQIYRVAASGGSA--E---RLTFQGNYNARASVSPDG----KKIAMVHGSGGQYRIAVMDLSTGSV----RTLTP-GSL 380 (433)
T ss_pred CceEEEEECCCCCe--E---EeecCCCCccCEEECCCC----CEEEEEECCCCceeEEEEECCCCCe----EECCC-CCC
Confidence 5 44455544421 1 111223345578999996 5666554332 588999865321 12221 123
Q ss_pred EEEEEEccCCCEEEEecCC--c--eEEeee
Q 022111 261 VWSVSWSLTGNLLAVADAN--N--VTLWKE 286 (302)
Q Consensus 261 v~~~~~spdg~~la~~~~d--~--i~~w~~ 286 (302)
..+.+|+|||++|+..+.+ . |.+++.
T Consensus 381 ~~~p~~spdG~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 381 DESPSFAPNGSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 4467999999988777553 2 455544
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=5e-10 Score=101.91 Aligned_cols=218 Identities=17% Similarity=0.165 Sum_probs=128.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeC---CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCCe--
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASS---DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDGQ-- 80 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~---d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~~-- 80 (302)
...|...+...+|+|||+.|+..+. +..|++|++..+..+ .+..+.+.+...+|+|+ |+.| ++.+.++.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~g~~~~~~~SPD--G~~la~~~~~~g~~~ 271 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---LVGNFPGMTFAPRFSPD--GRKVVMSLSQGGNTD 271 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE---EeecCCCcccCcEECCC--CCEEEEEEecCCCce
Confidence 3467778999999999998887663 467999998654332 34455666778899874 6655 56667766
Q ss_pred EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC--cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 81 VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG--NISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 81 i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
|.+||+.++ ....+..+........|+|| |..|+..+. ++ .|.+++.... .. ..+. .+...+....|
T Consensus 272 Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spD--G~~i~f~s~~~g~~~Iy~~d~~g~-~~--~~lt-~~~~~~~~~~~ 341 (435)
T PRK05137 272 IYTMDLRSG----TTTRLTDSPAIDTSPSYSPD--GSQIVFESDRSGSPQLYVMNADGS-NP--RRIS-FGGGRYSTPVW 341 (435)
T ss_pred EEEEECCCC----ceEEccCCCCccCceeEcCC--CCEEEEEECCCCCCeEEEEECCCC-Ce--EEee-cCCCcccCeEE
Confidence 445566554 23445556666778999998 566776653 33 5666665422 22 1221 12334556789
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
+|++ +.|+..+.+ ..|.+||+.++.. ..+. ....+.+.+|+||+ +.|+..+.+
T Consensus 342 SpdG--------------~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt-~~~~~~~p~~spDG----~~i~~~~~~ 397 (435)
T PRK05137 342 SPRG--------------DLIAFTKQGGGQFSIGVMKPDGSGE-----RILT-SGFLVEGPTWAPNG----RVIMFFRQT 397 (435)
T ss_pred CCCC--------------CEEEEEEcCCCceEEEEEECCCCce-----Eecc-CCCCCCCCeECCCC----CEEEEEEcc
Confidence 9864 555554432 3577788754321 1111 12246788999996 556554432
Q ss_pred ------CeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 235 ------GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 235 ------~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
..|.+.|+..... ..+. ....+...+|||
T Consensus 398 ~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCC
Confidence 2455666543211 1222 123455667776
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.5e-10 Score=101.57 Aligned_cols=219 Identities=21% Similarity=0.281 Sum_probs=127.7
Q ss_pred cccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-EEEeCCC--eE
Q 022111 8 TGHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-ASCSYDG--QV 81 (302)
Q Consensus 8 ~~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~D~--~i 81 (302)
..|...+.+.+|+|||+.|+..+.+ ..|++|++..+....+. .+.+.....+|+++ |+.| ++.+.++ .|
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpD--G~~l~~~~s~~g~~~I 274 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPD--GRRLALTLSRDGNPEI 274 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCC--CCEEEEEEeCCCCceE
Confidence 3456678889999999999887744 36889998654433333 33344557889874 6655 4556665 58
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEEecC-CCCeeeeeecccCCCCeEEEEeCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFTATA-DGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
.+||+.++. ...+..+.......+|+|| |..|+..+. ++...+|.+.. ++... .+. .+......+.|+|
T Consensus 275 y~~d~~~g~----~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~~iy~~dl~~g~~~--~lt-~~g~~~~~~~~Sp 345 (433)
T PRK04922 275 YVMDLGSRQ----LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRPQIYRVAASGGSAE--RLT-FQGNYNARASVSP 345 (433)
T ss_pred EEEECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCCCCeE--Eee-cCCCCccCEEECC
Confidence 888886642 3345555555678899998 566766653 45544554332 22222 111 1122234678888
Q ss_pred CCCCCceeecccCCCceeEEEeeCC-C--cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC-C
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCD-N--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD-G 235 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D-~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D-~ 235 (302)
++ +.|+..+.+ + .|.+||+.++... .+. +.......+|+||+ ++|+..+.+ +
T Consensus 346 DG--------------~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt-~~~~~~~p~~spdG----~~i~~~s~~~g 401 (433)
T PRK04922 346 DG--------------KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLT-PGSLDESPSFAPNG----SMVLYATREGG 401 (433)
T ss_pred CC--------------CEEEEEECCCCceeEEEEECCCCCeE-----ECC-CCCCCCCceECCCC----CEEEEEEecCC
Confidence 64 555554332 2 5889998765321 122 22235567999996 666666553 3
Q ss_pred --eEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 236 --TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 236 --~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
.|.+++.... . ...+....+.+...+|||
T Consensus 402 ~~~L~~~~~~g~--~--~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 402 RGVLAAVSTDGR--V--RQRLVSADGEVREPAWSP 432 (433)
T ss_pred ceEEEEEECCCC--c--eEEcccCCCCCCCCccCC
Confidence 4666665432 1 122223344566777876
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.2e-10 Score=109.19 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=139.6
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE--E---EEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW--Q---VAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~--~---v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
.+....+....++++.+..+..+-+|+..... ....+. |...+. + +.++. +.-++++|+.-+.|.+|+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~--~~~~i~-~~er~~l~~~~~~g~s~--~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSS--VLSKIQ-SDERCTLYSSLIIGDSA--EELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCc--eehhcC-CCceEEEEeEEEEeccC--cEEEEEeccccccEEEEecc
Confidence 34445566667888888999999999975432 122221 221111 1 12222 13578999999999999986
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
..+ .+. .+.+|.+.|.++.|+-| |.++++.|+|+++++|++.+.......- -+|+..+..+.+.|
T Consensus 164 ~dn--~p~-~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~~~~~~~--fgHsaRvw~~~~~~-------- 228 (967)
T KOG0974|consen 164 EDN--KPI-RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSREVLGCTG--FGHSARVWACCFLP-------- 228 (967)
T ss_pred ccC--Ccc-eecccCCceEEEEEccC--CcEEEEEecCcceeeeecccccccCccc--ccccceeEEEEecc--------
Confidence 332 122 67899999999999987 7799999999999999987543222122 36888888888876
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..++|++.|.+.++|+..... +..+.+|. ..|..++..++. -.++|++.|+.+++|++..
T Consensus 229 --------n~i~t~gedctcrvW~~~~~~-----l~~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 --------NRIITVGEDCTCRVWGVNGTQ-----LEVYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred --------ceeEEeccceEEEEEecccce-----ehhhhhhhhcceeEEEEcCCc----eEEEeeccCcchhhhhhhc
Confidence 279999999999999876543 23566664 458899988874 6799999999999999754
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3e-10 Score=96.19 Aligned_cols=249 Identities=12% Similarity=0.158 Sum_probs=166.0
Q ss_pred ccceeEEEEccCC--CEEEEeeCCCcEEEEeecCCCceE----EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 11 EDTVHDVAMDFYG--KRLATASSDSSIKIIGLSNSASQH----LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 11 ~~~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
...|..++|--++ +.|..++.|..+.++.++...... +.....-.++|..+... ...|.+|-.+|.+.+|
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~----dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA----DGTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc----CCEEEEEecCCcEEEE
Confidence 3466777776544 566666677777777765432211 12334456777777764 2367799999999999
Q ss_pred EcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC--CcEEEEEecCCCCeeeeeecc--------cCCCCeE
Q 022111 85 KEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD--GNISVFTATADGGWDTTRIDQ--------AHPVGVT 153 (302)
Q Consensus 85 d~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d--~~v~~~~~~~~~~~~~~~~~~--------~h~~~v~ 153 (302)
....+.. ..++..+..+ ..+..+.-+|.. ..++|+|+.. +.+.+||+... .+++.... .-+..++
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~-p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~t 206 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTD-PYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWIT 206 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCC-CceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeec
Confidence 8763320 1122223322 345555555543 3578889999 89999998754 22222110 0111233
Q ss_pred EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
.+.|-|. ++...||+|+.-+.+|+||.+.... .+..|.-.+.+|.++..-|.+ ++|.+|..
T Consensus 207 di~Fl~g------------~~~~~fat~T~~hqvR~YDt~~qRR---PV~~fd~~E~~is~~~l~p~g----n~Iy~gn~ 267 (412)
T KOG3881|consen 207 DIRFLEG------------SPNYKFATITRYHQVRLYDTRHQRR---PVAQFDFLENPISSTGLTPSG----NFIYTGNT 267 (412)
T ss_pred cceecCC------------CCCceEEEEecceeEEEecCcccCc---ceeEeccccCcceeeeecCCC----cEEEEecc
Confidence 3444332 1257899999999999999986542 334455567889999999985 88999999
Q ss_pred CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
-+.+..||.+.... .+..+.+..+.|.++--+|.+.+||+++-| -+||+|...
T Consensus 268 ~g~l~~FD~r~~kl--~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 KGQLAKFDLRGGKL--LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cchhheecccCcee--eccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99999999986431 223346777889999999999999999999 699999865
No 231
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=1.8e-10 Score=94.23 Aligned_cols=203 Identities=20% Similarity=0.286 Sum_probs=136.8
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA 95 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 95 (302)
++.|++-+..++++-.+|.+.+-+......+.++..++|+-+++-..|+.. +++++.+||.|+.+.-||++-.+.+ ..
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~-i~ 203 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPKTF-IW 203 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCcce-ee
Confidence 456777788888888888888555444334555678999999999999754 5789999999999999999844322 12
Q ss_pred EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111 96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175 (302)
Q Consensus 96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
+..+-|..-|.++.-+|. .+.++++|+.|-.|++||.+..+. .+.. ..-...|..+.+.|... .
T Consensus 204 ~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~k-Pl~~--~~v~GGVWRi~~~p~~~------------~ 267 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGK-PLFK--AKVGGGVWRIKHHPEIF------------H 267 (339)
T ss_pred ecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccC-cccc--CccccceEEEEecchhh------------h
Confidence 224457777888877764 367999999999999999885432 1111 12346799999998642 2
Q ss_pred eeEEEeeCCCcEEEEEEecCccccc-cccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEE-EEE
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMD-CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVV-IWT 241 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~-iwd 241 (302)
..|++|-..| ++|-++..+...+. .++..+.|.+-...-.|.-. ...|||++. |+.|+ +|-
T Consensus 268 ~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~----~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 268 RLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK----DSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred HHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc----cceeeeeeccccceeeeee
Confidence 3455555544 67777665432211 23455678766666666221 256888774 77655 663
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=4.7e-10 Score=94.27 Aligned_cols=197 Identities=18% Similarity=0.310 Sum_probs=128.0
Q ss_pred CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111 57 PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA 135 (302)
Q Consensus 57 ~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~ 135 (302)
.+..++|.. + =..+|.+..|-.|++|+-++. +...++ .-...|+|++|-|.. +..|+.|...+ |.+|....
T Consensus 100 dlr~~aWhq-H-~~~fava~nddvVriy~ksst----~pt~Lks~sQrnvtclawRPls-aselavgCr~g-IciW~~s~ 171 (445)
T KOG2139|consen 100 DLRGVAWHQ-H-IIAFAVATNDDVVRIYDKSST----CPTKLKSVSQRNVTCLAWRPLS-ASELAVGCRAG-ICIWSDSR 171 (445)
T ss_pred ceeeEeech-h-hhhhhhhccCcEEEEeccCCC----CCceecchhhcceeEEEeccCC-cceeeeeecce-eEEEEcCc
Confidence 456678843 2 234788899999999986542 111222 134679999999984 45677776654 66886643
Q ss_pred CCCeee----------eeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC-CCcEEEEEEecCccccccccc
Q 022111 136 DGGWDT----------TRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC-DNTVKVWKMYNGIWKMDCFPA 204 (302)
Q Consensus 136 ~~~~~~----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~-D~~v~iwd~~~~~~~~~~~~~ 204 (302)
...... ..+.......|+++.|.+++ ..+++++. |..|.|||..++... .+.
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg--------------t~l~tAS~gsssi~iWdpdtg~~~--pL~- 234 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG--------------TILVTASFGSSSIMIWDPDTGQKI--PLI- 234 (445)
T ss_pred ccccccccccccccchhheeCCCCceeeEEEEcCCC--------------CEEeecccCcceEEEEcCCCCCcc--ccc-
Confidence 221100 00111112579999999864 67888876 667999999877421 111
Q ss_pred cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEe
Q 022111 205 LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284 (302)
Q Consensus 205 ~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w 284 (302)
--.-+.+.-+.||||+ ..|.+++-|+..++|+.... |..+--.-..+.|....|+|+|++|..+....=++|
T Consensus 235 -~~glgg~slLkwSPdg----d~lfaAt~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 235 -PKGLGGFSLLKWSPDG----DVLFAATCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred -ccCCCceeeEEEcCCC----CEEEEecccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 1234557789999996 77999999999999965432 221110112347899999999999988877766666
Q ss_pred ee
Q 022111 285 KE 286 (302)
Q Consensus 285 ~~ 286 (302)
..
T Consensus 307 sl 308 (445)
T KOG2139|consen 307 SL 308 (445)
T ss_pred EE
Confidence 54
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.7e-09 Score=95.91 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=152.2
Q ss_pred ccccceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEE----------E----------------EecCcc------
Q 022111 9 GHEDTVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHL----------A----------------TLKGHR------ 55 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~----------~----------------~~~~h~------ 55 (302)
+|....+.|..+|||+|+ |+|-+--.|++||+.+-..+.- . .+.-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 677888999999999866 4566788899999853221100 0 000010
Q ss_pred -----cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEE
Q 022111 56 -----GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISV 130 (302)
Q Consensus 56 -----~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~ 130 (302)
..-+.++++.+. ..+++.|+.. .|--.+++.+. -+..|....+.+++|..++. ..+|++|+.+|.|..
T Consensus 129 ~~RIP~~GRDm~y~~~s-cDly~~gsg~-evYRlNLEqGr---fL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEf 201 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPS-CDLYLVGSGS-EVYRLNLEQGR---FLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEF 201 (703)
T ss_pred eeecCcCCccccccCCC-ccEEEeecCc-ceEEEEccccc---cccccccccccceeeeecCc--cceEEecccCceEEE
Confidence 011223333221 2344333333 23333443331 22334445688999999987 347999999999999
Q ss_pred EEecCCCCeeeeeec---ccCCC-----CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc
Q 022111 131 FTATADGGWDTTRID---QAHPV-----GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF 202 (302)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~h~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~ 202 (302)
||.+........... ..|+. .|+++.|+-+ +-.++.|+.+|.+.|||++.... .+
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~--------------gL~~aVGts~G~v~iyDLRa~~p---l~ 264 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDD--------------GLHVAVGTSTGSVLIYDLRASKP---LL 264 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCC--------------ceeEEeeccCCcEEEEEcccCCc---ee
Confidence 998754322211111 12333 3777777643 56799999999999999987531 11
Q ss_pred cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NV 281 (302)
Q Consensus 203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i 281 (302)
..-.+..-+|..+.|.+... .+.|+| .+.+.++|||-..... -...+....+..+++=|++-++.+|-.+ .+
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~--q~~v~S-~Dk~~~kiWd~~~Gk~----~asiEpt~~lND~C~~p~sGm~f~Ane~~~m 337 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQ--QNKVVS-MDKRILKIWDECTGKP----MASIEPTSDLNDFCFVPGSGMFFTANESSKM 337 (703)
T ss_pred ecccCCccceeeecccccCC--CceEEe-cchHHhhhcccccCCc----eeeccccCCcCceeeecCCceEEEecCCCcc
Confidence 11123456799999987631 234443 3456799999654321 1223455668888888988888888666 56
Q ss_pred EEeeecCCce---EEEe
Q 022111 282 TLWKEAVDGE---WQQV 295 (302)
Q Consensus 282 ~~w~~~~~~~---~~~~ 295 (302)
..|-+..-|+ |+.+
T Consensus 338 ~~yyiP~LGPaPrWCSf 354 (703)
T KOG2321|consen 338 HTYYIPSLGPAPRWCSF 354 (703)
T ss_pred eeEEccccCCCchhhhH
Confidence 5555544333 6653
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=105.79 Aligned_cols=230 Identities=17% Similarity=0.210 Sum_probs=158.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
...|.++.|--+.+++|.+ +-+.+++||-.. ..+.-++.|. .|..+.|-|- --+|++++..|.++.-|+..+.
T Consensus 170 ~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G---tElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~Gk 242 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG---TELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGK 242 (545)
T ss_pred hhhhhhhhhhcchHHHHhh-hhceEEEecCCC---cEEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhh
Confidence 3456777776666677655 677899998643 3344455554 5888999764 3578999999999999997763
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
.+..+..-.+.+..+.-+|- ...+-+|...|+|.+|.-... -.+..+. .|..+|++++..+.
T Consensus 243 ---lVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~sk--ePLvKiL-cH~g~V~siAv~~~---------- 304 (545)
T KOG1272|consen 243 ---LVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNSK--EPLVKIL-CHRGPVSSIAVDRG---------- 304 (545)
T ss_pred ---hhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCCc--chHHHHH-hcCCCcceEEECCC----------
Confidence 55666667788888888886 347889999999999965432 2233333 79999999999876
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC--Ccc
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE--GEQ 248 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~--~~~ 248 (302)
|.++||.|.|+.++|||++... .+.++.. .-+...+++|-.+ +++.|..-.+.||.-... ...
T Consensus 305 ----G~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~Sqkg------lLA~~~G~~v~iw~d~~~~s~~~ 369 (545)
T KOG1272|consen 305 ----GRYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLSQKG------LLALSYGDHVQIWKDALKGSGHG 369 (545)
T ss_pred ----CcEEeecccccceeEeeecccc----ccceeec-CCCcccccccccc------ceeeecCCeeeeehhhhcCCCCC
Confidence 4899999999999999998643 1222211 2345667777543 677778888999963221 111
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEEEEecCCc
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADANN 280 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~ 280 (302)
...-+......+|..+.|.|=.++|.+|...+
T Consensus 370 ~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 370 ETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CcchhhhccCcccccceeccHHHeeeccccCC
Confidence 11112223345899999999777777775543
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.1e-09 Score=89.68 Aligned_cols=229 Identities=15% Similarity=0.211 Sum_probs=140.1
Q ss_pred CCcEEEEeecCCCceEEE--EecCcccCeEEEEeeC-CCCCC-EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC---C
Q 022111 32 DSSIKIIGLSNSASQHLA--TLKGHRGPVWQVAWAH-PKFGS-ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS---S 104 (302)
Q Consensus 32 d~~v~lw~~~~~~~~~~~--~~~~h~~~v~~v~~~~-~~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~---~ 104 (302)
-|.+.+|++......+.. +...|+ .+..+.|.. +.+|. .++-+-.+|.|.++..........+..+..-.- .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts-~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTS-TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeeccc-ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 356788887543222221 223444 466777754 23455 566677889999997543211111111111111 2
Q ss_pred eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC
Q 022111 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD 184 (302)
Q Consensus 105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D 184 (302)
--++.|++- +..++++..+|.+..-+.. .......+.-+.|..+.....|+... ...+.+||.|
T Consensus 124 ~lslD~~~~--~~~i~vs~s~G~~~~v~~t-~~~le~vq~wk~He~E~Wta~f~~~~-------------pnlvytGgDD 187 (339)
T KOG0280|consen 124 ALSLDISTS--GTKIFVSDSRGSISGVYET-EMVLEKVQTWKVHEFEAWTAKFSDKE-------------PNLVYTGGDD 187 (339)
T ss_pred eeEEEeecc--CceEEEEcCCCcEEEEecc-eeeeeecccccccceeeeeeecccCC-------------CceEEecCCC
Confidence 346677765 5678888888888843322 11122222224777777777776532 2689999999
Q ss_pred CcEEEEEEecCccccccc-cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEE
Q 022111 185 NTVKVWKMYNGIWKMDCF-PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWS 263 (302)
Q Consensus 185 ~~v~iwd~~~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 263 (302)
+.+..||++-+. .++ +..+-|...|.||.-+|.. +..|++|+.|-.|++||.|..+++. ......+.||.
T Consensus 188 ~~l~~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~~~---~~~I~TGsYDe~i~~~DtRnm~kPl---~~~~v~GGVWR 258 (339)
T KOG0280|consen 188 GSLSCWDIRIPK---TFIWHNSKVHTSGVVSIYSSPPK---PTYIATGSYDECIRVLDTRNMGKPL---FKAKVGGGVWR 258 (339)
T ss_pred ceEEEEEecCCc---ceeeecceeeecceEEEecCCCC---CceEEEeccccceeeeehhcccCcc---ccCccccceEE
Confidence 999999999432 122 2245688999999998863 6899999999999999998654331 22234578999
Q ss_pred EEEccC--CCEEEEecCCceEEeee
Q 022111 264 VSWSLT--GNLLAVADANNVTLWKE 286 (302)
Q Consensus 264 ~~~spd--g~~la~~~~d~i~~w~~ 286 (302)
+.++|. +++|++.=.++.+|-+.
T Consensus 259 i~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 259 IKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred EEecchhhhHHHHHHHhcCceEEEe
Confidence 999984 33444443445666655
No 236
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=7.4e-09 Score=86.23 Aligned_cols=255 Identities=17% Similarity=0.267 Sum_probs=144.8
Q ss_pred eeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCC-CEEEEEeCCCeEEEEEcCCCCc
Q 022111 14 VHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG-SILASCSYDGQVIIWKEGNQND 91 (302)
Q Consensus 14 v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~s~D~~i~iwd~~~~~~ 91 (302)
|.-+-|..|.- .|.....|+.|.+|++..+. -..++....+.+..++|+|+ | .+|.+..-|-.|.+|.+.+..
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL~t~~- 125 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSLNTQK- 125 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecce--eEEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEeccce-
Confidence 33456777764 45566788899999997643 33456666788999999975 6 567787889999999987642
Q ss_pred eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCCCcee---
Q 022111 92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAPGALV--- 167 (302)
Q Consensus 92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~--- 167 (302)
..-+...+..+..++|+|| |+..+.++.-.-...+.+..-..|.+. .+. -.+...+.+.|+|++.--.++
T Consensus 126 ---~~~~~~pK~~~kg~~f~~d--g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~-~dT~DltgieWsPdg~~laVwd~~ 199 (447)
T KOG4497|consen 126 ---GYLLPHPKTNVKGYAFHPD--GQFCAILSRRDCKDYVQISSCKAWILLKEFK-LDTIDLTGIEWSPDGNWLAVWDNV 199 (447)
T ss_pred ---eEEecccccCceeEEECCC--CceeeeeecccHHHHHHHHhhHHHHHHHhcC-CCcccccCceECCCCcEEEEecch
Confidence 2223333455688899988 665555442211001111000011110 000 112234455566654211110
Q ss_pred ----------ecc-----cCCCceeEEEeeCCCcEEEEEEec-----C----------c-----cc--------ccc---
Q 022111 168 ----------GLG-----LLDPVQKLASCGCDNTVKVWKMYN-----G----------I-----WK--------MDC--- 201 (302)
Q Consensus 168 ----------~~~-----~~~~~~~l~s~~~D~~v~iwd~~~-----~----------~-----~~--------~~~--- 201 (302)
+++ -.+-+++|+.|+.|+++||.+--+ . . .+ ..|
T Consensus 200 Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 200 LEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred hhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 000 112268999999999999865311 0 0 00 000
Q ss_pred -------------------------ccccc------cCCCceeEEEeeCCCCCCccEEEEEec--CCeEEEEEeccCCcc
Q 022111 202 -------------------------FPALQ------MHSDWVRSVAWAPNLGLPKSTIASASQ--DGTVVIWTCAKEGEQ 248 (302)
Q Consensus 202 -------------------------~~~~~------~h~~~v~~v~~~p~~~~~~~~l~s~s~--D~~i~iwd~~~~~~~ 248 (302)
++.++ .-...+.-++||+|. .+++|-.+ -..+-+||++..+-
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds----~y~aTrnd~~PnalW~Wdlq~l~l- 354 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS----TYAATRNDKYPNALWLWDLQNLKL- 354 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc----eEEeeecCCCCceEEEEechhhhh-
Confidence 00111 112246789999984 56666643 34688999875321
Q ss_pred eeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 249 WEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
..+ .....+|....|.|....|++.... .+.+|..+
T Consensus 355 --~av-LiQk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 355 --HAV-LIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred --hhh-hhhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 111 2335689999999988777666555 79999753
No 237
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=4.1e-10 Score=92.98 Aligned_cols=253 Identities=17% Similarity=0.265 Sum_probs=157.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCC---ceEEEEecCcc------------cCeEEEEeeCCCCCCEEEEE
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA---SQHLATLKGHR------------GPVWQVAWAHPKFGSILASC 75 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~---~~~~~~~~~h~------------~~v~~v~~~~~~~~~~l~s~ 75 (302)
.+.|+++-|...|.+|++|...|.|.+|..+... .+....+++|+ ..|..|.|..+..-..+.-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578899999999999999999999999764322 12223355553 45677888765432345555
Q ss_pred eCCCeEEEEEcCCCC-------------------c--------------------eeEEEEe-cCCCCCeeEEEecCCCC
Q 022111 76 SYDGQVIIWKEGNQN-------------------D--------------------WTQAHTF-NDHKSSVNSIAWAPHEL 115 (302)
Q Consensus 76 s~D~~i~iwd~~~~~-------------------~--------------------~~~~~~~-~~h~~~i~~l~~~pd~~ 115 (302)
..|++|++|.+...+ + ..+...+ ..|.--|+++.|+.|.
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~- 184 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK- 184 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch-
Confidence 789999999875421 0 0011112 4577778899998873
Q ss_pred CcEEEEEecCCcEEEEEecC-CCCeeeeeecccCCC-----CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE
Q 022111 116 GLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPV-----GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV 189 (302)
Q Consensus 116 ~~~l~sg~~d~~v~~~~~~~-~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i 189 (302)
..+++ ++|-.|.+|.+.. ++.+.+..+. .|.. -|++..|+|.+ ...+.-.+..|+|++
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~sFnIVDiK-P~nmeeLteVItSaeFhp~~-------------cn~fmYSsSkG~Ikl 248 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDGSFNIVDIK-PHNMEELTEVITSAEFHPEM-------------CNVFMYSSSKGEIKL 248 (460)
T ss_pred -heeee-ccceeeeeccccccCCceEEEecc-CccHHHHHHHHhhcccCHhH-------------cceEEEecCCCcEEe
Confidence 34554 5688999998763 4455555543 4433 47788888865 345666777899999
Q ss_pred EEEecCc-----ccc-cc------ccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee-eec-
Q 022111 190 WKMYNGI-----WKM-DC------FPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR-VLK- 255 (302)
Q Consensus 190 wd~~~~~-----~~~-~~------~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~- 255 (302)
-|++... .+. .. ..-+.+-...|.++.|+|++ ++|++-+. -+++|||++..+.+.... ++.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng----ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG----RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC----cEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 9998431 110 00 00112223468899999985 67777654 479999998765432211 110
Q ss_pred -------cC-CCcE---EEEEEccCCCEEEEecCC-ceEEee
Q 022111 256 -------DF-KTPV---WSVSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 256 -------~~-~~~v---~~~~~spdg~~la~~~~d-~i~~w~ 285 (302)
-+ ...| ..+.||-|.+.+.+|+=. +--++.
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 01 1223 357888877777777543 444554
No 238
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.21 E-value=4.2e-09 Score=100.71 Aligned_cols=220 Identities=19% Similarity=0.233 Sum_probs=139.8
Q ss_pred ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC----CceeEEEEecCCCCCeeEEEecCCCCCcEEE
Q 022111 45 SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120 (302)
Q Consensus 45 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~----~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~ 120 (302)
+..+..+..|+..|..++.+++ .+.+++|||.||+||+|+.+.. .......++..-..++.++..++. +..+|
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~~A 1114 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQFA 1114 (1431)
T ss_pred ceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCeEE
Confidence 4567788899999999998876 3689999999999999997532 112233344434678888888876 67899
Q ss_pred EEecCCcEEEEEecCCC--Ceeee--eecccCC-CCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111 121 CGSSDGNISVFTATADG--GWDTT--RIDQAHP-VGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG 195 (302)
Q Consensus 121 sg~~d~~v~~~~~~~~~--~~~~~--~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~ 195 (302)
.++.||.|.+.++.... ..... .....+. ..+.++.-. .....+..|+.+..-+.|..||++..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~-----------~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF-----------TAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc-----------cccccceeEEEEEeccceEEecchhh
Confidence 99999999998876411 00000 0000111 112221100 01111236777888888999998754
Q ss_pred c--cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEc---cCC
Q 022111 196 I--WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWS---LTG 270 (302)
Q Consensus 196 ~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s---pdg 270 (302)
. |.. ......+.|++++.+|-+ +.++.|+.-|.+-+||+|-.... .........++.-+... |..
T Consensus 1184 ~~~w~l----k~~~~hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i--~sw~~P~~~~i~~v~~~~~~~~~ 1253 (1431)
T KOG1240|consen 1184 HDAWRL----KNQLRHGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPI--LSWEHPARAPIRHVWLCPTYPQE 1253 (1431)
T ss_pred hhHHhh----hcCccccceeEEEecCCc----eEEEEecCCceEEEEEeecCcee--ecccCcccCCcceEEeeccCCCC
Confidence 2 221 122345779999999975 78999999999999999854211 11112233455555544 444
Q ss_pred CEEEEecC--C-ceEEeeecC
Q 022111 271 NLLAVADA--N-NVTLWKEAV 288 (302)
Q Consensus 271 ~~la~~~~--d-~i~~w~~~~ 288 (302)
...++++. + -|.+|++..
T Consensus 1254 S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1254 SVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ceEEEecccCCCceeeeeccc
Confidence 56666655 3 599999854
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.20 E-value=1.7e-08 Score=91.36 Aligned_cols=203 Identities=22% Similarity=0.319 Sum_probs=119.6
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~ 110 (302)
.|.++|..... ...+..+...+...+|+++ |++|+.++.+ ..|.+||+.++.. ..+..+...+.+++|
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~~~~~~p~~Spd--g~~la~~~~~~~~~~i~v~d~~~g~~----~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSREPILSPAWSPD--GQKLAYVSFESGKPEIYVQDLATGQR----EKVASFPGMNGAPAF 241 (417)
T ss_pred eEEEEcCCCCC---CEEeecCCCceecccCCCC--CCEEEEEEcCCCCcEEEEEECCCCCE----EEeecCCCCccceEE
Confidence 46666664322 2344456667888999864 7888877643 4799999876532 223335566778899
Q ss_pred cCCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-CCC-
Q 022111 111 APHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG-CDN- 185 (302)
Q Consensus 111 ~pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~-~D~- 185 (302)
+|| +..|+ +.+.++ .|.+|++..... ..+. .+........|+|++ +.|+.++ .++
T Consensus 242 spD--g~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~-~~~~~~~~~~~s~dg--------------~~l~~~s~~~g~ 301 (417)
T TIGR02800 242 SPD--GSKLAVSLSKDGNPDIYVMDLDGKQL---TRLT-NGPGIDTEPSWSPDG--------------KSIAFTSDRGGS 301 (417)
T ss_pred CCC--CCEEEEEECCCCCccEEEEECCCCCE---EECC-CCCCCCCCEEECCCC--------------CEEEEEECCCCC
Confidence 998 54454 445554 466667653321 2221 233334456788753 5555443 333
Q ss_pred -cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC---eEEEEEeccCCcceeeeeeccCCCcE
Q 022111 186 -TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG---TVVIWTCAKEGEQWEGRVLKDFKTPV 261 (302)
Q Consensus 186 -~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~~~~~~~~~~v 261 (302)
.|+++|+.++.. ..+..+...+....|+|++ +.|+..+.++ .|.+||+.... . ..+... ...
T Consensus 302 ~~iy~~d~~~~~~-----~~l~~~~~~~~~~~~spdg----~~i~~~~~~~~~~~i~~~d~~~~~--~--~~l~~~-~~~ 367 (417)
T TIGR02800 302 PQIYMMDADGGEV-----RRLTFRGGYNASPSWSPDG----DLIAFVHREGGGFNIAVMDLDGGG--E--RVLTDT-GLD 367 (417)
T ss_pred ceEEEEECCCCCE-----EEeecCCCCccCeEECCCC----CEEEEEEccCCceEEEEEeCCCCC--e--EEccCC-CCC
Confidence 466666655421 1233345567788999986 6677777665 67777776421 1 222221 123
Q ss_pred EEEEEccCCCEEEEecCC
Q 022111 262 WSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 262 ~~~~~spdg~~la~~~~d 279 (302)
...+|+|||++|+.+..+
T Consensus 368 ~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCceECCCCCEEEEEEeC
Confidence 456899999988887654
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.19 E-value=6.7e-09 Score=94.01 Aligned_cols=188 Identities=22% Similarity=0.260 Sum_probs=112.2
Q ss_pred ccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCC--eEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDG--QVI 82 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~--~i~ 82 (302)
.+...+.+..|+|||++|+.+..+ ..|++|++..+.... +..+...+.+++|+++ |+.|+ +.+.++ .|.
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spD--g~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPD--GSKLAVSLSKDGNPDIY 261 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCC--CCEEEEEECCCCCccEE
Confidence 455568888999999999877654 479999986543322 3334455667899864 66554 555554 477
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+||+.+.. ...+..+........|+|| +..|+..+. ++ .|.++++... ... .+. .+...+..+.|+|
T Consensus 262 ~~d~~~~~----~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~~~iy~~d~~~~-~~~--~l~-~~~~~~~~~~~sp 331 (417)
T TIGR02800 262 VMDLDGKQ----LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGSPQIYMMDADGG-EVR--RLT-FRGGYNASPSWSP 331 (417)
T ss_pred EEECCCCC----EEECCCCCCCCCCEEECCC--CCEEEEEECCCCCceEEEEECCCC-CEE--Eee-cCCCCccCeEECC
Confidence 77876542 2344445555567789998 556665544 34 4555555422 221 221 2233456677887
Q ss_pred CCCCCceeecccCCCceeEEEeeCCC---cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDN---TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~---~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~ 235 (302)
++ ++|+.++.++ .|.+||+.++.. ..+ ... ......+|+|++ +.|+..+.++
T Consensus 332 dg--------------~~i~~~~~~~~~~~i~~~d~~~~~~--~~l---~~~-~~~~~p~~spdg----~~l~~~~~~~ 386 (417)
T TIGR02800 332 DG--------------DLIAFVHREGGGFNIAVMDLDGGGE--RVL---TDT-GLDESPSFAPNG----RMILYATTRG 386 (417)
T ss_pred CC--------------CEEEEEEccCCceEEEEEeCCCCCe--EEc---cCC-CCCCCceECCCC----CEEEEEEeCC
Confidence 64 5666666655 678888776422 111 111 123456899996 5666666554
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=2.5e-10 Score=112.28 Aligned_cols=187 Identities=17% Similarity=0.274 Sum_probs=135.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
.|..+.-+|...+-+||+.||.|++|....+.........|. +.|+.++|++. |+.+..+..||.+.+|....
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~p---- 2282 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQASP---- 2282 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeecccCC----
Confidence 455555567677889999999999999865443222222344 78999999864 88888999999999998752
Q ss_pred eEEEEecCCCCCeeEEEecCCCCCcEEEEE---ecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 93 TQAHTFNDHKSSVNSIAWAPHELGLSLACG---SSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg---~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
++....+-|+.....++|-. ..++++ ++++++.+||........+.. ..|...++++++.|..
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~-------- 2348 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKH-------- 2348 (2439)
T ss_pred cceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcc--------
Confidence 24445666888888888863 345555 356899999875332222222 4799999999999863
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+.|+|||.+|.|+|||++..+ ..+++.. +.. ..+|++|+..|+|+||++..
T Consensus 2349 ------qllisggr~G~v~l~D~rqrq----l~h~~~~---------~~~-----~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2349 ------QLLISGGRKGEVCLFDIRQRQ----LRHTFQA---------LDT-----REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ------eEEEecCCcCcEEEeehHHHH----HHHHhhh---------hhh-----hheeeccCcccceEEEEccc
Confidence 789999999999999998652 2233321 221 36799999999999999875
No 242
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.16 E-value=7.2e-10 Score=92.13 Aligned_cols=223 Identities=17% Similarity=0.271 Sum_probs=134.7
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEE
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAH 96 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~ 96 (302)
++|||+|+++|+++.- .+-|=|. .+.+.. .+-.--+.|.-|.|..++ -.+|.....|+.|.+|++... .|.+
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~--~tlq~~-qlf~cldki~yieW~ads-~~ilC~~yk~~~vqvwsl~Qp-ew~c-- 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDS--ETLQLH-QLFLCLDKIVYIEWKADS-CHILCVAYKDPKVQVWSLVQP-EWYC-- 85 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEecc--chhhHH-HHHHHHHHhhheeeeccc-eeeeeeeeccceEEEEEeecc-eeEE--
Confidence 6899999999998755 3333232 222211 111123556678887653 346777789999999998643 3333
Q ss_pred EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111 97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ 176 (302)
Q Consensus 97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 176 (302)
++....+.+.++.||||.+ .+|.+..-+-.|.+|.+.+..... +. .....+..++|.|++ +
T Consensus 86 kIdeg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~---~~-~pK~~~kg~~f~~dg--------------~ 146 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL---LP-HPKTNVKGYAFHPDG--------------Q 146 (447)
T ss_pred EeccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE---ec-ccccCceeEEECCCC--------------c
Confidence 4556778899999999942 467788889999999987654321 11 112345778888864 5
Q ss_pred eEEEeeCCCcEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-
Q 022111 177 KLASCGCDNTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL- 254 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~- 254 (302)
+.+.++.-.......+.. ..| ..+..+..-+--.+.+.|+||+ +. +-+||---+ ..+.
T Consensus 147 f~ai~sRrDCkdyv~i~~c~~W--~ll~~f~~dT~DltgieWsPdg----~~---------laVwd~~Le-----ykv~a 206 (447)
T KOG4497|consen 147 FCAILSRRDCKDYVQISSCKAW--ILLKEFKLDTIDLTGIEWSPDG----NW---------LAVWDNVLE-----YKVYA 206 (447)
T ss_pred eeeeeecccHHHHHHHHhhHHH--HHHHhcCCCcccccCceECCCC----cE---------EEEecchhh-----heeee
Confidence 555554321111111110 011 1122333333335789999985 44 457874321 1111
Q ss_pred ccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 255 KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 255 ~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
-+-+-.+..++|||.+++|++|+.| .+|+-+.
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhce
Confidence 1223468899999999999999999 5777553
No 243
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=1.1e-09 Score=91.58 Aligned_cols=228 Identities=15% Similarity=0.294 Sum_probs=131.5
Q ss_pred ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCC------------CCCeeEEEecCCCCCcEEE
Q 022111 55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDH------------KSSVNSIAWAPHELGLSLA 120 (302)
Q Consensus 55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h------------~~~i~~l~~~pd~~~~~l~ 120 (302)
...|.+|.|.+ .|.+||||..+|.|.++.-..... ..-...++.| ..+|+.+.|.++.+...++
T Consensus 25 adiis~vef~~--~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDH--YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeec--ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34678999975 499999999999999996432211 1011122222 3688999999886666778
Q ss_pred EEecCCcEEEEEecCCCCee-e-eeecccCCCCeEEEE------------eCC-----CCCCCceeecccCCCceeEEEe
Q 022111 121 CGSSDGNISVFTATADGGWD-T-TRIDQAHPVGVTSVS------------WAP-----AMAPGALVGLGLLDPVQKLASC 181 (302)
Q Consensus 121 sg~~d~~v~~~~~~~~~~~~-~-~~~~~~h~~~v~~~~------------~~~-----~~~~~~~~~~~~~~~~~~l~s~ 181 (302)
....|++|++|.+...+... - ....+.....++++. .+| ..++..+.++...+++..++|+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88899999999886422100 0 000000111111111 001 1111112222222344556654
Q ss_pred eCCCcEEEEEEecCcccccccccccc-----CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC-----cc-ee
Q 022111 182 GCDNTVKVWKMYNGIWKMDCFPALQM-----HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG-----EQ-WE 250 (302)
Q Consensus 182 ~~D~~v~iwd~~~~~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~-----~~-~~ 250 (302)
.|=.|.+|.+.-....+..+ ..+. -..-|++.-|+|.. -+.++-.|.-|+||+-|++... .. ..
T Consensus 183 -DdLRINLWnlei~d~sFnIV-DIKP~nmEeLteVITsaEFhp~~---cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIV-DIKPANMEELTEVITSAEFHPHH---CNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred -cceeeeeccccccCCceeEE-EccccCHHHHHHHHhhhccCHhH---ccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 56678999985332111111 1111 12458889999974 3789999999999999998421 00 00
Q ss_pred -------eeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCC
Q 022111 251 -------GRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVD 289 (302)
Q Consensus 251 -------~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~ 289 (302)
.....+.-..|..+.||++|+++++=+=.+|++||.+.+
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 000011123577899999999988765558999998543
No 244
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=8.5e-07 Score=75.08 Aligned_cols=262 Identities=15% Similarity=0.239 Sum_probs=160.2
Q ss_pred cccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCc--eEEE--EecCcccCeEEEEeeCCCCCCEEEEEeC-CCeE
Q 022111 10 HEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSAS--QHLA--TLKGHRGPVWQVAWAHPKFGSILASCSY-DGQV 81 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~--~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i 81 (302)
+....+=++|++++++|.++-.+ +.|.-|.++...+ ..+. .+.++ +-+.+++++ ++++|+++.. -+.|
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~yvsvd~--~g~~vf~AnY~~g~v 113 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPCYVSVDE--DGRFVFVANYHSGSV 113 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCeEEEECC--CCCEEEEEEccCceE
Confidence 34455668999999999888644 6788887764322 2222 22232 225678765 3788887764 6789
Q ss_pred EEEEcCCCCc-eeEEEEecCCCCC----------eeEEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeee-eecccC
Q 022111 82 IIWKEGNQND-WTQAHTFNDHKSS----------VNSIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTT-RIDQAH 148 (302)
Q Consensus 82 ~iwd~~~~~~-~~~~~~~~~h~~~----------i~~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~-~~~~~h 148 (302)
.++.++.... +.....+ .|.+. +=+..+.|+ +++|++.+.. -.|.+|++. ++.+... ......
T Consensus 114 ~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~Dri~~y~~~-dg~L~~~~~~~v~~ 189 (346)
T COG2706 114 SVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTDRIFLYDLD-DGKLTPADPAEVKP 189 (346)
T ss_pred EEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCceEEEEEcc-cCccccccccccCC
Confidence 9998855332 2222222 25444 667778898 6677776543 478899987 3333221 111122
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCcee-EEEeeCCCcEEEEEEecCccccccccccc------cCCCceeEEEeeCCC
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQK-LASCGCDNTVKVWKMYNGIWKMDCFPALQ------MHSDWVRSVAWAPNL 221 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~~~D~~v~iwd~~~~~~~~~~~~~~~------~h~~~v~~v~~~p~~ 221 (302)
...-+.+.|+|++ ++ .+.+--+++|-+|.......++..++.+. .-..+..+|..+|||
T Consensus 190 G~GPRHi~FHpn~--------------k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 190 GAGPRHIVFHPNG--------------KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred CCCcceEEEcCCC--------------cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 3456889999864 33 34455589999999876433333333221 124567789999996
Q ss_pred CCCccEEEEEe-cCCeEEEEEeccCCcceee-eeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEee
Q 022111 222 GLPKSTIASAS-QDGTVVIWTCAKEGEQWEG-RVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVS 296 (302)
Q Consensus 222 ~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~ 296 (302)
++|-++. ....|-+|.+......... .....+........|+|+|++|+++..+ +|.++.. ...|++.+..
T Consensus 256 ----rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 256 ----RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred ----CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence 5555443 2447888887654322111 1111222336788999999999999776 6999987 5677776655
Q ss_pred e
Q 022111 297 V 297 (302)
Q Consensus 297 ~ 297 (302)
+
T Consensus 332 ~ 332 (346)
T COG2706 332 R 332 (346)
T ss_pred c
Confidence 4
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=3.5e-09 Score=99.65 Aligned_cols=184 Identities=18% Similarity=0.254 Sum_probs=131.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCee---E--EEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeee
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN---S--IAWAPHELGLSLACGSSDGNISVFTATADGGWDTTR 143 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~---~--l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~ 143 (302)
.+.++.+..+..+.+||..... ....+. +..+.. + +.++++ ..++++|+.-+.|.+|+...+.. . ..
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~---~~~~i~-~~er~~l~~~~~~g~s~~--~~~i~~gsv~~~iivW~~~~dn~-p-~~ 170 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSS---VLSKIQ-SDERCTLYSSLIIGDSAE--ELYIASGSVFGEIIVWKPHEDNK-P-IR 170 (967)
T ss_pred cceEEEEEcCceEEEEecccCc---eehhcC-CCceEEEEeEEEEeccCc--EEEEEeccccccEEEEeccccCC-c-ce
Confidence 4577888888899999876542 122221 332221 1 123444 45899999999999998763321 1 22
Q ss_pred ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCC
Q 022111 144 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGL 223 (302)
Q Consensus 144 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 223 (302)
+ .+|...+.++.|+.+ +.+++|+|.|+++|+|++.+.... ..+.-+|...|..+.|.|+
T Consensus 171 l-~GHeG~iF~i~~s~d--------------g~~i~s~SdDRsiRlW~i~s~~~~---~~~~fgHsaRvw~~~~~~n--- 229 (967)
T KOG0974|consen 171 L-KGHEGSIFSIVTSLD--------------GRYIASVSDDRSIRLWPIDSREVL---GCTGFGHSARVWACCFLPN--- 229 (967)
T ss_pred e-cccCCceEEEEEccC--------------CcEEEEEecCcceeeeeccccccc---CcccccccceeEEEEeccc---
Confidence 3 389999999998865 589999999999999999876321 1245689999999999986
Q ss_pred CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
.|+|+++|-++++|+.... ++. .........+|.++..++..++++++.| ++++|+..
T Consensus 230 ---~i~t~gedctcrvW~~~~~--~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNGT--QLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ---eeEEeccceEEEEEecccc--eeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 4999999999999976532 222 2212234569999998888888888888 79999964
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=2.9e-08 Score=90.36 Aligned_cols=219 Identities=19% Similarity=0.211 Sum_probs=119.1
Q ss_pred ccccceeEEEEccCCCEEEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCC--eEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDG--QVI 82 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~--~i~ 82 (302)
.+...+....|+|||++|+..+.+ ..|.+|++.++..+.+.... +.+...+|+|+ |+.|+ +.+.++ .|.
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~---g~~~~~~~SpD--G~~la~~~~~~g~~~Iy 270 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE---GLNGAPAWSPD--GSKLAFVLSKDGNPEIY 270 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC---CCcCCeEECCC--CCEEEEEEccCCCceEE
Confidence 456678888999999998876644 35788888655433333333 33456889864 67665 555555 466
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+||+.++. ...+..+........|+|| +..++..+ .++. |.++++... ........ . .......|+|
T Consensus 271 ~~d~~~~~----~~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~iy~~d~~~g-~~~~lt~~-~--~~~~~~~~Sp 340 (430)
T PRK00178 271 VMDLASRQ----LSRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQIYKVNVNGG-RAERVTFV-G--NYNARPRLSA 340 (430)
T ss_pred EEECCCCC----eEEcccCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECCCC-CEEEeecC-C--CCccceEECC
Confidence 77876542 2344455556677889998 55555544 3444 444554332 22211111 1 1223467887
Q ss_pred CCCCCceeecccCCCceeEEEeeC-CC--cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCC
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGC-DN--TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDG 235 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~-D~--~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~ 235 (302)
++ +.|+..+. ++ .|.++|+.++.. ..+.. ........|+||+ +.|+..+ .++
T Consensus 341 dg--------------~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~----~~~~~~p~~spdg----~~i~~~~~~~g 396 (430)
T PRK00178 341 DG--------------KTLVMVHRQDGNFHVAAQDLQRGSV--RILTD----TSLDESPSVAPNG----TMLIYATRQQG 396 (430)
T ss_pred CC--------------CEEEEEEccCCceEEEEEECCCCCE--EEccC----CCCCCCceECCCC----CEEEEEEecCC
Confidence 64 45544443 33 477888876532 11111 1122356899996 5555544 344
Q ss_pred eEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 236 TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
.-+||-+...+.. ...+....+.+...+|||
T Consensus 397 ~~~l~~~~~~g~~--~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 397 RGVLMLVSINGRV--RLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ceEEEEEECCCCc--eEECcCCCCCcCCCccCC
Confidence 4344433322211 112222334566677776
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.5e-09 Score=93.89 Aligned_cols=200 Identities=18% Similarity=0.280 Sum_probs=134.1
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA 95 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~ 95 (302)
+++++.-.--|+.++....|+-++++. +..+..+.--.+.+++|..++- ..+|+.|+.||.+..||.+....-..+
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccc--cccccccccccccceeeeecCc--cceEEecccCceEEEecchhhhhheee
Confidence 355543332344455566677778765 3445555555678898988653 468888889999999998765321111
Q ss_pred E---EecCCC-----CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 96 H---TFNDHK-----SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 96 ~---~~~~h~-----~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
. ....|. ..|+++.|+.+ |..++.|..+|.+.|||++...+. ....+....+|..+.|.+..
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~--gL~~aVGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~------ 283 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDD--GLHVAVGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTD------ 283 (703)
T ss_pred ecccccCCCccccccCcceEEEecCC--ceeEEeeccCCcEEEEEcccCCce--eecccCCccceeeecccccC------
Confidence 1 112222 34999999865 889999999999999999976443 23333456788999997753
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.+..++|+ ....++|||-.++.. +. . ..-...++++|+-|+. .+++++-++..+..|-+-..
T Consensus 284 ------~q~~v~S~-Dk~~~kiWd~~~Gk~-~a---s-iEpt~~lND~C~~p~s----Gm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 284 ------QQNKVVSM-DKRILKIWDECTGKP-MA---S-IEPTSDLNDFCFVPGS----GMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred ------CCceEEec-chHHhhhcccccCCc-ee---e-ccccCCcCceeeecCC----ceEEEecCCCcceeEEcccc
Confidence 12445554 356799999877631 11 1 1223448999999986 56899999998888877553
No 248
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.10 E-value=1e-08 Score=85.75 Aligned_cols=162 Identities=22% Similarity=0.314 Sum_probs=115.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
.+++++.+.+..+.|+.|-..|++.-+.+...- ...+.....|...|..+-|+-+ .+++++++.|..+.---.+.+
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccC
Confidence 467888888888999999999999888764321 1223444579999999888754 578888888876543211111
Q ss_pred C--------------------------------------ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEE
Q 022111 90 N--------------------------------------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVF 131 (302)
Q Consensus 90 ~--------------------------------------~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~ 131 (302)
+ ...++.++.+|.+.+.++.|-|. ..+|.+|..|..+.+|
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~--~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG--QRLLFSGASDHSVIMW 224 (404)
T ss_pred CcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC--CcEEEeccccCceEEE
Confidence 1 01234567889999999999876 4589999999999999
Q ss_pred EecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe
Q 022111 132 TATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY 193 (302)
Q Consensus 132 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~ 193 (302)
|+.-..... .. .++|...|..+...+.. ++++|++.|+.|-+||++
T Consensus 225 digg~~g~~-~e-l~gh~~kV~~l~~~~~t--------------~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 225 DIGGRKGTA-YE-LQGHNDKVQALSYAQHT--------------RQLISCGEDGGIVVWNMN 270 (404)
T ss_pred eccCCccee-ee-eccchhhhhhhhhhhhh--------------eeeeeccCCCeEEEEecc
Confidence 986332222 22 24777777777654432 789999999999999985
No 249
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.09 E-value=6.3e-08 Score=78.67 Aligned_cols=244 Identities=10% Similarity=0.019 Sum_probs=146.6
Q ss_pred EEEccC-----CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111 17 VAMDFY-----GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND 91 (302)
Q Consensus 17 ~~~s~~-----~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 91 (302)
+.|.|- -.+||.||.-|...+|...+.. .......-|...|.-+.=..+. .--+..++.|.++++.+++....
T Consensus 73 ~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 73 MTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ccccchHhhccccEEEeccccceeeeecccCcc-cceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEecCcc
Confidence 555553 2589999999999999886432 2344444454434322111111 12356789999999999865422
Q ss_pred eeEEEEecCCCC--CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeec
Q 022111 92 WTQAHTFNDHKS--SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGL 169 (302)
Q Consensus 92 ~~~~~~~~~h~~--~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 169 (302)
.+..|.. .++++.++|| +.++++.++...|-+|.+..++...........+..-.+..|+..
T Consensus 151 -----~~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~--------- 214 (344)
T KOG4532|consen 151 -----KFAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN--------- 214 (344)
T ss_pred -----cceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccC---------
Confidence 1222433 3789999998 668999999999999988765543222111111222234555543
Q ss_pred ccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcc
Q 022111 170 GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQ 248 (302)
Q Consensus 170 ~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 248 (302)
..++|++..||++.|||++.-...+..... -.-|.+.++.+.|+|-+.. ..|.-.-.=+.+.+-|++....-
T Consensus 215 -----~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l--DLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 215 -----DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL--DLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred -----cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc--eEEEEecCcceEEEEEcccCcee
Confidence 368999999999999999865433222211 1248899999999985422 34444444567899998864321
Q ss_pred eeeeeec-----cCC-CcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 249 WEGRVLK-----DFK-TPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 249 ~~~~~~~-----~~~-~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
+..+.. .+. ..|..-.|+-++.-+-++..+.+.=|.+
T Consensus 288 -q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni 330 (344)
T KOG4532|consen 288 -QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNI 330 (344)
T ss_pred -eEEecCccccccccccccccccccCCCcccccccchhhheeec
Confidence 111111 111 2366777877776665555544444443
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=9e-08 Score=86.73 Aligned_cols=222 Identities=15% Similarity=0.171 Sum_probs=119.6
Q ss_pred ceeEEEEccCCCEE---EEeeCCCc--EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-----CCeEE
Q 022111 13 TVHDVAMDFYGKRL---ATASSDSS--IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-----DGQVI 82 (302)
Q Consensus 13 ~v~~~~~s~~~~~l---~s~~~d~~--v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----D~~i~ 82 (302)
.+.+=+|+|||+.+ ++...++. |.+.++..+....+..+.+ .....+|+|+ |+.||..+. |..+.
T Consensus 186 ~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g---~~~~p~wSPD--G~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 186 LSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG---NQLMPTFSPR--KKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC---CccceEECCC--CCEEEEEECCCCCcceeEE
Confidence 44556899999752 24444444 5566766554444444444 3456789875 777775542 33445
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCC
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+|++..+...................+|+|| |..|+..+ .++...+|.+.. .+. ....+. .+...+....|+|
T Consensus 261 ~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g~~~ly~~~~~~~g~-~~~~lt-~~~~~~~~p~wSP 336 (428)
T PRK01029 261 SFSLETGAIGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDGRPRIYIMQIDPEGQ-SPRLLT-KKYRNSSCPAWSP 336 (428)
T ss_pred EeecccCCCCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCCCceEEEEECccccc-ceEEec-cCCCCccceeECC
Confidence 5666542111111222222234467899998 66666655 466666665432 111 112222 2233456788999
Q ss_pred CCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE-EEec--
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA-SASQ-- 233 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-s~s~-- 233 (302)
++ +.|+..+.+ ..|.+||+.++.. ..+......+.+..|+||+ +.|+ +...
T Consensus 337 DG--------------~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~~~~~~p~wSpDG----~~L~f~~~~~g 393 (428)
T PRK01029 337 DG--------------KKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSPENKESPSWAIDS----LHLVYSAGNSN 393 (428)
T ss_pred CC--------------CEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCCCCccceEECCCC----CEEEEEECCCC
Confidence 74 555554432 3688999877632 1222223356789999996 4555 3333
Q ss_pred CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111 234 DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG 270 (302)
Q Consensus 234 D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg 270 (302)
...|.++|+..... ..+ ....+.+...+|||-.
T Consensus 394 ~~~L~~vdl~~g~~---~~L-t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 394 ESELYLISLITKKT---RKI-VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CceEEEEECCCCCE---EEe-ecCCCcccCceecCCC
Confidence 34577777754321 122 2223445667787743
No 251
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=3.1e-07 Score=81.44 Aligned_cols=251 Identities=15% Similarity=0.143 Sum_probs=126.4
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE-eCCCeEEEEEcCCCCcee
Q 022111 15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC-SYDGQVIIWKEGNQNDWT 93 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~D~~i~iwd~~~~~~~~ 93 (302)
..+.|++||+++++++.|+.|.++|+.+. +.+.+++... .-.+++++++ |++++++ ..++.+.++|.++..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~~G~-~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tle--- 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIKVGG-NPRGIAVSPD--GKYVYVANYEPGTVSVIDAETLE--- 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-SS-EEEEEEE--T--TTEEEEEEEETTEEEEEETTT-----
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEecCC-CcceEEEcCC--CCEEEEEecCCCceeEecccccc---
Confidence 44779999999999999999999998653 3555554433 2467888864 8876655 579999999987753
Q ss_pred EEEEecC-------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 94 QAHTFND-------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 94 ~~~~~~~-------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
.++.+.. ...++..+..+|... .++++--..+.|.+-|...........+. .........|+|++
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdg----- 183 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDG----- 183 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS-----
T ss_pred ceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCccc-----
Confidence 3443322 234667777777632 23444334466666565433222222221 11223445666653
Q ss_pred eecccCCCceeE-EEeeCCCcEEEEEEecCc---------------------------c---------------------
Q 022111 167 VGLGLLDPVQKL-ASCGCDNTVKVWKMYNGI---------------------------W--------------------- 197 (302)
Q Consensus 167 ~~~~~~~~~~~l-~s~~~D~~v~iwd~~~~~---------------------------~--------------------- 197 (302)
+++ ++.-..+.|-++|..+.. |
T Consensus 184 ---------ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 184 ---------RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp ---------SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred ---------ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 222 222223333333322210 0
Q ss_pred ---ccccccccccCCCceeEEEeeCCCCCCccEEEEE----ecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC
Q 022111 198 ---KMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA----SQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG 270 (302)
Q Consensus 198 ---~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~----s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg 270 (302)
..+.++++...... .-+.-+|++ .++... ....+|.++|.++... ...+.......+..++|++||
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s----~~vwvd~~~~~~~~~v~viD~~tl~~--~~~i~~~~~~~~~h~ef~~dG 327 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDS----RYVWVDTFLNPDADTVQVIDKKTLKV--VKTITPGPGKRVVHMEFNPDG 327 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-----SEEEEE-TT-SSHT-EEEEECCGTEE--EE-HHHHHT--EEEEEE-TTS
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCC----ccEEeeccCCCCCceEEEEECcCcce--eEEEeccCCCcEeccEECCCC
Confidence 00111122222222 456668875 555555 5567899999876421 111111222348899999999
Q ss_pred CEEEEe--cCC-ceEEeeecCCceEEEeee
Q 022111 271 NLLAVA--DAN-NVTLWKEAVDGEWQQVSV 297 (302)
Q Consensus 271 ~~la~~--~~d-~i~~w~~~~~~~~~~~~~ 297 (302)
+++-++ ..+ .|.++|...-....+.++
T Consensus 328 ~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 328 KEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp SEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred CEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 966444 455 699999876555555543
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.07 E-value=3.1e-06 Score=74.67 Aligned_cols=250 Identities=17% Similarity=0.187 Sum_probs=142.4
Q ss_pred EEEeeCC----CcEEEEeecCCCce--EEEEecCcccCeEEEEeeCCCCCCEEEEEeC----CCeEEEEEcCCC-CceeE
Q 022111 26 LATASSD----SSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSY----DGQVIIWKEGNQ-NDWTQ 94 (302)
Q Consensus 26 l~s~~~d----~~v~lw~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~----D~~i~iwd~~~~-~~~~~ 94 (302)
++.|+.. +.|++|+++....+ .+..... ...-..++++++ +++|.++.+ ++.|..|++... ...+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~~~Ps~l~~~~~--~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~ 78 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-GENPSWLAVSPD--GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTL 78 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-SSSECCEEE-TT--SSEEEEEETTSSTTTEEEEEEEETTTTEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-CCCCceEEEEeC--CCEEEEEEccccCCCCEEEEEECCCcceeEE
Confidence 4456655 78999998544432 2333221 223345777654 677777765 578999988654 33344
Q ss_pred EEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccC-----------CCCeEEEEeCCCCC
Q 022111 95 AHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAH-----------PVGVTSVSWAPAMA 162 (302)
Q Consensus 95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~ 162 (302)
+............++++|+ +.+|+++. .++.+.++++...+..........| .....++.++|+
T Consensus 79 ~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd-- 154 (345)
T PF10282_consen 79 LNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD-- 154 (345)
T ss_dssp EEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--
T ss_pred eeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCC--
Confidence 4443323334567888888 55666665 5899999999865433221100001 112345566665
Q ss_pred CCceeecccCCCceeEEE-eeCCCcEEEEEEecCccccccccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEE
Q 022111 163 PGALVGLGLLDPVQKLAS-CGCDNTVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIW 240 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s-~~~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iw 240 (302)
++++++ .-....|.+|++......+.....+. .....-+.+.|+|++ ....+....+++|.++
T Consensus 155 ------------g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg---~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 155 ------------GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDG---KYAYVVNELSNTVSVF 219 (345)
T ss_dssp ------------SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTS---SEEEEEETTTTEEEEE
T ss_pred ------------CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCc---CEEEEecCCCCcEEEE
Confidence 355444 43345799999976532222112221 223446889999996 2455666778899999
Q ss_pred EeccCCcceee--e--ee-ccCC--CcEEEEEEccCCCEEEEecCC--ceEEeee-cCCceEEEeee
Q 022111 241 TCAKEGEQWEG--R--VL-KDFK--TPVWSVSWSLTGNLLAVADAN--NVTLWKE-AVDGEWQQVSV 297 (302)
Q Consensus 241 d~~~~~~~~~~--~--~~-~~~~--~~v~~~~~spdg~~la~~~~d--~i~~w~~-~~~~~~~~~~~ 297 (302)
++......+.. . .+ .++. .....|+++|||++|.++.+. .|.+++. ...|.+.....
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 99832221111 1 11 1222 257789999999999887554 7999998 45566655443
No 253
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.07 E-value=4.3e-08 Score=82.14 Aligned_cols=249 Identities=13% Similarity=0.175 Sum_probs=157.6
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..||.+.|++...-|-..-+.+.+.|.++|||--.. .++.-..+. --..+++++.|.+. ..+|+.+-..|++.-+.
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrd-s~q~wpsI~~~mP~~~~~~~y~~e--~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRD-SGQYWPSIYHYMPSPCSAMEYVSE--SRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEecc-ccccCchhhhhCCCCceEeeeecc--ceEEEEEEecceEEEEE
Confidence 568999999877766666788999999999995321 122111221 12356788888753 56788888888888876
Q ss_pred cCCC-CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 86 EGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 86 ~~~~-~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
+... +.....+.+..|..+|..+.|+.. ...+++.+.|+.+..--.+.+... +|-. -..+.... +.
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e~~~~l-------g~Y~---~~~~~t~~-~~ 163 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTESGNRL-------GGYN---FETPASAL-QF 163 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeeccCCcc-------cceE---eeccCCCC-ce
Confidence 5321 112234455669999999999754 458899999988764322211110 1100 00000000 00
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+ -.+-..|-..+.|....+... ....+.++.+|.+.|.+++|.|.. ..+.+|+.|..+.+||+-.
T Consensus 164 d---------~~~~fvGd~~gqvt~lr~~~~--~~~~i~~~~~h~~~~~~l~Wd~~~----~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 164 D---------ALYAFVGDHSGQITMLKLEQN--GCQLITTFNGHTGEVTCLKWDPGQ----RLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred e---------eEEEEecccccceEEEEEeec--CCceEEEEcCcccceEEEEEcCCC----cEEEeccccCceEEEeccC
Confidence 0 012223333445555444322 123456788999999999999863 6799999999999999975
Q ss_pred CCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 245 EGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.+.. .-.+.++...|..+..-+--++|.+++.| .|.+|+++.
T Consensus 229 ~~g~--~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 229 RKGT--AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred Ccce--eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 4321 23345677778888877777888888888 799999864
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.06 E-value=2.3e-07 Score=84.63 Aligned_cols=218 Identities=19% Similarity=0.233 Sum_probs=114.6
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CC--eEEEEEcCCCCceeEEEEecCCCCCeeEEEe
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DG--QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW 110 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~ 110 (302)
.+.++|.+.... ..+..+...+...+|+|+ |+.|+..+. ++ .|.+||+.++.. ..+..+ .+.....+|
T Consensus 199 ~l~i~d~dG~~~---~~l~~~~~~~~~p~wSPD--G~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~---~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNE---QMLLRSPEPLMSPAWSPD--GRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSF---PGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCc---eEeecCCCcccCceECCC--CCEEEEEEecCCCcEEEEEECCCCCe-EEecCC---CCCcCCeeE
Confidence 455566654322 234455667888999875 787776654 33 477778765432 222222 333457899
Q ss_pred cCCCCCcEEE-EEecCCc--EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeE-EEeeCCCc
Q 022111 111 APHELGLSLA-CGSSDGN--ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKL-ASCGCDNT 186 (302)
Q Consensus 111 ~pd~~~~~l~-sg~~d~~--v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-~s~~~D~~ 186 (302)
+|| |..|+ +.+.++. |.++|+... .. ..+. .+........|+|++ +.| ++...++.
T Consensus 270 SPD--G~~La~~~~~~g~~~Iy~~dl~tg-~~--~~lt-~~~~~~~~p~wSpDG--------------~~I~f~s~~~g~ 329 (448)
T PRK04792 270 SPD--GKKLALVLSKDGQPEIYVVDIATK-AL--TRIT-RHRAIDTEPSWHPDG--------------KSLIFTSERGGK 329 (448)
T ss_pred CCC--CCEEEEEEeCCCCeEEEEEECCCC-Ce--EECc-cCCCCccceEECCCC--------------CEEEEEECCCCC
Confidence 998 55555 4566676 555555432 21 2222 233345677898864 444 44433444
Q ss_pred --EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEE--EeccCCcceeeeeeccCCCcE
Q 022111 187 --VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIW--TCAKEGEQWEGRVLKDFKTPV 261 (302)
Q Consensus 187 --v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iw--d~~~~~~~~~~~~~~~~~~~v 261 (302)
|.++|+.++.. ..+ ++.+ ......+|+||+ ++|+..+. ++..+|| |+.... . ..+... ...
T Consensus 330 ~~Iy~~dl~~g~~--~~L-t~~g--~~~~~~~~SpDG----~~l~~~~~~~g~~~I~~~dl~~g~--~--~~lt~~-~~d 395 (448)
T PRK04792 330 PQIYRVNLASGKV--SRL-TFEG--EQNLGGSITPDG----RSMIMVNRTNGKFNIARQDLETGA--M--QVLTST-RLD 395 (448)
T ss_pred ceEEEEECCCCCE--EEE-ecCC--CCCcCeeECCCC----CEEEEEEecCCceEEEEEECCCCC--e--EEccCC-CCC
Confidence 55555554421 111 1222 223457899996 45555444 5555555 443321 1 112211 112
Q ss_pred EEEEEccCCCEEEEecCC--ceEEeeecCCceEEE
Q 022111 262 WSVSWSLTGNLLAVADAN--NVTLWKEAVDGEWQQ 294 (302)
Q Consensus 262 ~~~~~spdg~~la~~~~d--~i~~w~~~~~~~~~~ 294 (302)
.+.+|+|||++|+.+..+ .-.+|-+..+|.+..
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 245799999998776543 233444434565543
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.3e-07 Score=84.49 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=117.4
Q ss_pred EEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEec
Q 022111 35 IKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA 111 (302)
Q Consensus 35 v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~ 111 (302)
+.++|.+... ...+..+...+...+|+|+ |+.|+..+.+ ..|.+|++.++.. ..+....+.+...+|+
T Consensus 181 l~~~d~~g~~---~~~l~~~~~~~~~p~wSpD--G~~la~~s~~~~~~~l~~~~l~~g~~----~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 181 LQRSDYDGAR---AVTLLQSREPILSPRWSPD--GKRIAYVSFEQKRPRIFVQNLDTGRR----EQITNFEGLNGAPAWS 251 (430)
T ss_pred EEEECCCCCC---ceEEecCCCceeeeeECCC--CCEEEEEEcCCCCCEEEEEECCCCCE----EEccCCCCCcCCeEEC
Confidence 5555655432 2334456677889999875 7887766643 3578888866531 2233334455678999
Q ss_pred CCCCCcEEE-EEecCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCC--
Q 022111 112 PHELGLSLA-CGSSDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDN-- 185 (302)
Q Consensus 112 pd~~~~~l~-sg~~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~-- 185 (302)
|| |..|+ +.+.++ .|.+||+.... . ..+. .+........|+|++ +.|+ +...++
T Consensus 252 pD--G~~la~~~~~~g~~~Iy~~d~~~~~-~--~~lt-~~~~~~~~~~~spDg--------------~~i~f~s~~~g~~ 311 (430)
T PRK00178 252 PD--GSKLAFVLSKDGNPEIYVMDLASRQ-L--SRVT-NHPAIDTEPFWGKDG--------------RTLYFTSDRGGKP 311 (430)
T ss_pred CC--CCEEEEEEccCCCceEEEEECCCCC-e--EEcc-cCCCCcCCeEECCCC--------------CEEEEEECCCCCc
Confidence 98 55565 455555 46666765432 1 2222 233345567888864 4444 433344
Q ss_pred cEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec-CC--eEEEEEeccCCcceeeeeeccCCCcEE
Q 022111 186 TVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DG--TVVIWTCAKEGEQWEGRVLKDFKTPVW 262 (302)
Q Consensus 186 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~--~i~iwd~~~~~~~~~~~~~~~~~~~v~ 262 (302)
.|+++|+.++.. ..+ ++.+ ......+|+|++ +.|+..+. ++ .|.++|+..... ..+... ....
T Consensus 312 ~iy~~d~~~g~~--~~l-t~~~--~~~~~~~~Spdg----~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~~-~~~~ 377 (430)
T PRK00178 312 QIYKVNVNGGRA--ERV-TFVG--NYNARPRLSADG----KTLVMVHRQDGNFHVAAQDLQRGSV----RILTDT-SLDE 377 (430)
T ss_pred eEEEEECCCCCE--EEe-ecCC--CCccceEECCCC----CEEEEEEccCCceEEEEEECCCCCE----EEccCC-CCCC
Confidence 466666655431 111 1122 223457899996 55665554 33 467777764321 222211 1122
Q ss_pred EEEEccCCCEEEEecCC--ceEEeeecCCce
Q 022111 263 SVSWSLTGNLLAVADAN--NVTLWKEAVDGE 291 (302)
Q Consensus 263 ~~~~spdg~~la~~~~d--~i~~w~~~~~~~ 291 (302)
..+|+|||+.|+.++.+ .-+||-+..+|.
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 46899999999887543 234444433444
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=8.6e-10 Score=100.36 Aligned_cols=218 Identities=19% Similarity=0.247 Sum_probs=143.9
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 7 ETGHEDTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
+-||..+|+++.|.++. ..||+++.|..|..||+.+.. .++.....-......|+|+- +++..+|+ +..+-|++||
T Consensus 110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-~p~ys~~~w~s~asqVkwny-k~p~vlas-shg~~i~vwd 186 (1081)
T KOG0309|consen 110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-RPFYSTSSWRSAASQVKWNY-KDPNVLAS-SHGNDIFVWD 186 (1081)
T ss_pred EecCccceeccccCCCCCcceeeccccccceeeeccCCC-cceeeeecccccCceeeecc-cCcchhhh-ccCCceEEEe
Confidence 45899999999999875 699999999999999997654 34555544333456789975 35777766 6667899999
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
.+.+. .++..+++|...|+.++|+.-. ...+.+++.|++|+.|+-.+........ ..-..++..-.+-|.+.
T Consensus 187 ~r~gs--~pl~s~K~~vs~vn~~~fnr~~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~--vtt~~piw~~r~~Pfg~--- 258 (1081)
T KOG0309|consen 187 LRKGS--TPLCSLKGHVSSVNSIDFNRFK-YSEIMSSSNDGTVKFWDYSKSTTESKRT--VTTNFPIWRGRYLPFGE--- 258 (1081)
T ss_pred ccCCC--cceEEecccceeeehHHHhhhh-hhhhcccCCCCceeeeccccccccccee--ccccCcceeccccccCc---
Confidence 97664 4677888899999999997542 2368899999999999986543211111 12233455555555432
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCc--c----ccccccccccCCCceeEEEeeCCCC----C--CccEEEEEec
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--W----KMDCFPALQMHSDWVRSVAWAPNLG----L--PKSTIASASQ 233 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--~----~~~~~~~~~~h~~~v~~v~~~p~~~----~--~~~~l~s~s~ 233 (302)
+..+.-.-.++.+.+++.++.. | ....+++|.||.+.|...-|--.+. + ..-+|+|=|.
T Consensus 259 ---------g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 259 ---------GYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred ---------eeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec
Confidence 1111111112233343332210 0 1245678999999998877743222 1 2347999999
Q ss_pred CCeEEEEEecc
Q 022111 234 DGTVVIWTCAK 244 (302)
Q Consensus 234 D~~i~iwd~~~ 244 (302)
|.++|+|-+..
T Consensus 330 D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 330 DQTLRLWPIDS 340 (1081)
T ss_pred CCceEeeeccH
Confidence 99999998754
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2.3e-07 Score=84.73 Aligned_cols=216 Identities=17% Similarity=0.224 Sum_probs=113.9
Q ss_pred cccceeEEEEccCCCEEEEeeCC-C--cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-EEeCCCe--EEE
Q 022111 10 HEDTVHDVAMDFYGKRLATASSD-S--SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-SCSYDGQ--VII 83 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d-~--~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~D~~--i~i 83 (302)
+...+....|+|||++|+-.+.+ + .|.++|+..+..+.+..+.+ .....+|+|+ |+.|+ +.+.++. |.+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g---~~~~~~wSPD--G~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPG---INGAPRFSPD--GKKLALVLSKDGQPEIYV 290 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCC---CcCCeeECCC--CCEEEEEEeCCCCeEEEE
Confidence 34456778999999988866543 3 47777776543333333333 3346789864 67554 5566776 555
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCCcEEEE--EecCCCCeeeeeecccCCCCeEEEEeCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDGNISVF--TATADGGWDTTRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 160 (302)
+|+.++. ...+..+........|+|| +..++..+ .++...+| ++.. +........ + .......|+|+
T Consensus 291 ~dl~tg~----~~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy~~dl~~-g~~~~Lt~~-g--~~~~~~~~SpD 360 (448)
T PRK04792 291 VDIATKA----LTRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIYRVNLAS-GKVSRLTFE-G--EQNLGGSITPD 360 (448)
T ss_pred EECCCCC----eEECccCCCCccceEECCC--CCEEEEEECCCCCceEEEEECCC-CCEEEEecC-C--CCCcCeeECCC
Confidence 5665542 3344445556678899998 55555444 34554555 4432 222211111 1 12234678886
Q ss_pred CCCCceeecccCCCceeEEEee-CCCcEEE--EEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCe
Q 022111 161 MAPGALVGLGLLDPVQKLASCG-CDNTVKV--WKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGT 236 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~-~D~~v~i--wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~ 236 (302)
+ +.|+..+ .++..+| +|+.++.. .. +... ......+|+||+ +.|+..+ .++.
T Consensus 361 G--------------~~l~~~~~~~g~~~I~~~dl~~g~~--~~---lt~~-~~d~~ps~spdG----~~I~~~~~~~g~ 416 (448)
T PRK04792 361 G--------------RSMIMVNRTNGKFNIARQDLETGAM--QV---LTST-RLDESPSVAPNG----TMVIYSTTYQGK 416 (448)
T ss_pred C--------------CEEEEEEecCCceEEEEEECCCCCe--EE---ccCC-CCCCCceECCCC----CEEEEEEecCCc
Confidence 4 4444443 3444444 56555421 11 1111 122345799996 4454444 4444
Q ss_pred --EEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 237 --VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 237 --i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
+.+++.... .. ..+....+.+...+|||
T Consensus 417 ~~l~~~~~~G~---~~-~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 417 QVLAAVSIDGR---FK-ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred eEEEEEECCCC---ce-EECcCCCCCcCCCccCC
Confidence 555554321 11 22223334566778887
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=2.9e-06 Score=71.93 Aligned_cols=244 Identities=15% Similarity=0.167 Sum_probs=142.8
Q ss_pred CCcEEEEeecCCCceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeC---CCeEEEEEcCCC-CceeEEEEecCCCCCee
Q 022111 32 DSSIKIIGLSNSASQH-LATLKGHRGPVWQVAWAHPKFGSILASCSY---DGQVIIWKEGNQ-NDWTQAHTFNDHKSSVN 106 (302)
Q Consensus 32 d~~v~lw~~~~~~~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---D~~i~iwd~~~~-~~~~~~~~~~~h~~~i~ 106 (302)
+.-|++|++.++.++. ...+-.+.+..+-|.|+++ .+.|.++-. ++.|.-|.+... +..+.+........+-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~--~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPD--QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCC--CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 5779999997544321 2233456677788999764 567777754 577888777542 23333333222333447
Q ss_pred EEEecCCCCCcEEEEEecC-CcEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCC--CCceeecccCCCceeEEEe-
Q 022111 107 SIAWAPHELGLSLACGSSD-GNISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMA--PGALVGLGLLDPVQKLASC- 181 (302)
Q Consensus 107 ~l~~~pd~~~~~l~sg~~d-~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~- 181 (302)
.++++++ +.+|.++... +.|.++.+...+..... ... .|.... |..+ ..-.+...+++++++|+++
T Consensus 93 yvsvd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~------p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 93 YVSVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSG------PHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred EEEECCC--CCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCC------CCccccCCccceeeeCCCCCEEEEee
Confidence 8888877 6677777654 78889988765433221 111 232220 0000 0112223344456777776
Q ss_pred -eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-----eeeec
Q 022111 182 -GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-----GRVLK 255 (302)
Q Consensus 182 -~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-----~~~~~ 255 (302)
+.| .|.+|++..+.........+ .-...-+-|.|+|++++ .-+..-.+++|-+|.......... ..+..
T Consensus 164 LG~D-ri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~---aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 164 LGTD-RIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKY---AYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred cCCc-eEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcE---EEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 445 49999998764332111112 22334578999999732 234455699999999876422111 11123
Q ss_pred cCCCc--EEEEEEccCCCEEEEecC--CceEEeeecCCce
Q 022111 256 DFKTP--VWSVSWSLTGNLLAVADA--NNVTLWKEAVDGE 291 (302)
Q Consensus 256 ~~~~~--v~~~~~spdg~~la~~~~--d~i~~w~~~~~~~ 291 (302)
+|.+. .-+|..+|||++|.+..+ |.|.++.+..++.
T Consensus 239 dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g 278 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG 278 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence 45444 557889999999988866 4799999866544
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.00 E-value=8.6e-08 Score=85.46 Aligned_cols=191 Identities=15% Similarity=0.220 Sum_probs=127.6
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEe------cC----------C--CCCcEEEEEecCCcEEE
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAW------AP----------H--ELGLSLACGSSDGNISV 130 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~------~p----------d--~~~~~l~sg~~d~~v~~ 130 (302)
..++|....||.+|||+...+...........-.+.-.+..| +| . .....++-|...|.|.+
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ 84 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLL 84 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEE
Confidence 578999999999999998665321111100001111222222 12 1 01246888888999999
Q ss_pred EEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111 131 FTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 131 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
|+...+ ..........|...|.++.|+... ..|.|++.|..+..|+.+... .++.+.+.+.
T Consensus 85 ys~~~g-~it~~~st~~h~~~v~~~~~~~~~--------------~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~ 145 (541)
T KOG4547|consen 85 YSVAGG-EITAKLSTDKHYGNVNEILDAQRL--------------GCIYSVGADLKVVYILEKEKV----IIRIWKEQKP 145 (541)
T ss_pred EEecCC-eEEEEEecCCCCCcceeeeccccc--------------CceEecCCceeEEEEecccce----eeeeeccCCC
Confidence 988643 222122224688889998876532 689999999999999998762 3445566677
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccC-----CCEEEEe-cCC-ceEE
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLT-----GNLLAVA-DAN-NVTL 283 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spd-----g~~la~~-~~d-~i~~ 283 (302)
.+.+++.+||+ .+++++| +.|++||+.+.. ......+|.++|..++|-.+ |+++.+. ... .+.+
T Consensus 146 ~~~sl~is~D~----~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 146 LVSSLCISPDG----KILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred ccceEEEcCCC----CEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 78999999995 6777775 569999998642 22345788999999999876 6666544 334 6899
Q ss_pred eeec
Q 022111 284 WKEA 287 (302)
Q Consensus 284 w~~~ 287 (302)
|...
T Consensus 217 w~v~ 220 (541)
T KOG4547|consen 217 WVVE 220 (541)
T ss_pred EEEE
Confidence 9863
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.8e-07 Score=82.27 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=131.9
Q ss_pred cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCc-ccCeEEEEee------CC------------CCCCEEEEEeCCCeE
Q 022111 21 FYGKRLATASSDSSIKIIGLSNSASQHLATLKGH-RGPVWQVAWA------HP------------KFGSILASCSYDGQV 81 (302)
Q Consensus 21 ~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h-~~~v~~v~~~------~~------------~~~~~l~s~s~D~~i 81 (302)
+-..++|....||.+|+|+........-..-..| ++...+..|. |. .+-..++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999864432211111111 2223333331 10 112357778889999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
.+|+...+. .+....-..|.+.|+++.++.+ ..-|.+++.|..+..|+....... ..-...+..+.+++.+|+
T Consensus 83 ~~ys~~~g~-it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~~~~---~~~~~~~~~~~sl~is~D- 155 (541)
T KOG4547|consen 83 LLYSVAGGE-ITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEKVII---RIWKEQKPLVSSLCISPD- 155 (541)
T ss_pred EEEEecCCe-EEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEecccceee---eeeccCCCccceEEEcCC-
Confidence 999986652 2222233469999999998765 337999999999999987543222 222244556778888776
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCC-CCCCccE-EEEEecCCeEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPN-LGLPKST-IASASQDGTVVI 239 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~~~~-l~s~s~D~~i~i 239 (302)
++.|++++ +.|++||+.+. +.+.+|.||.++|++++|..+ .+.-+.+ |.+...+..|.+
T Consensus 156 -------------~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 156 -------------GKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred -------------CCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 47788876 68999999986 567889999999999999765 1111344 444556778999
Q ss_pred EEeccC
Q 022111 240 WTCAKE 245 (302)
Q Consensus 240 wd~~~~ 245 (302)
|-++..
T Consensus 217 w~v~~~ 222 (541)
T KOG4547|consen 217 WVVEKE 222 (541)
T ss_pred EEEEcc
Confidence 988753
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=4.4e-07 Score=82.26 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=117.2
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE--E-EEEeCCCe--EEEEEcCCCCceeEEEEecCCCCCeeEE
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI--L-ASCSYDGQ--VIIWKEGNQNDWTQAHTFNDHKSSVNSI 108 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~--l-~s~s~D~~--i~iwd~~~~~~~~~~~~~~~h~~~i~~l 108 (302)
.|.+.|.+.... ..+......+..-+|+|+ |+. + ++...++. |-+.++..+.. ..+.. ..+.....
T Consensus 166 ~l~~~d~dG~~~---~~lt~~~~~~~sP~wSPD--G~~~~~~y~S~~~g~~~I~~~~l~~g~~-~~lt~---~~g~~~~p 236 (428)
T PRK01029 166 ELWSVDYDGQNL---RPLTQEHSLSITPTWMHI--GSGFPYLYVSYKLGVPKIFLGSLENPAG-KKILA---LQGNQLMP 236 (428)
T ss_pred eEEEEcCCCCCc---eEcccCCCCcccceEccC--CCceEEEEEEccCCCceEEEEECCCCCc-eEeec---CCCCccce
Confidence 455555544322 234334445667789875 553 3 23334444 45556654422 22322 33444567
Q ss_pred EecCCCCCcEEEEEec-CC----cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee-
Q 022111 109 AWAPHELGLSLACGSS-DG----NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG- 182 (302)
Q Consensus 109 ~~~pd~~~~~l~sg~~-d~----~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~- 182 (302)
+|+|| |..|+..+. ++ .+.+|++.....-....+...+........|+|++ +.|+..+
T Consensus 237 ~wSPD--G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG--------------~~Laf~s~ 300 (428)
T PRK01029 237 TFSPR--KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG--------------TRLVFVSN 300 (428)
T ss_pred EECCC--CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC--------------CEEEEEEC
Confidence 89999 656665543 23 33335544311111112211222233567899874 5555443
Q ss_pred CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---CeEEEEEeccCCcceeeeeeccCCC
Q 022111 183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD---GTVVIWTCAKEGEQWEGRVLKDFKT 259 (302)
Q Consensus 183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~~~~ 259 (302)
.++..+||.+.-.... .....+..+...+....|+||+ +.|+..+.+ ..|.+||+..... ..+.....
T Consensus 301 ~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG----~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~ 371 (428)
T PRK01029 301 KDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDG----KKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPE 371 (428)
T ss_pred CCCCceEEEEECcccc-cceEEeccCCCCccceeECCCC----CEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCC
Confidence 5666666654321000 0112233444567789999996 666665543 3688888865421 12222233
Q ss_pred cEEEEEEccCCCEEEEecCC----ceEEeeecCCceEEEe
Q 022111 260 PVWSVSWSLTGNLLAVADAN----NVTLWKEAVDGEWQQV 295 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~~d----~i~~w~~~~~~~~~~~ 295 (302)
.+.+..|+|||+.|+....+ .|.+++.. .+...++
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~-~g~~~~L 410 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLI-TKKTRKI 410 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECC-CCCEEEe
Confidence 46778999999988754322 46677754 3334443
No 262
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=100.81 Aligned_cols=218 Identities=17% Similarity=0.246 Sum_probs=138.4
Q ss_pred CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCC
Q 022111 24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKS 103 (302)
Q Consensus 24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 103 (302)
+.+.....+++..-|..... -..++-|-..|.++. ++|. ..+.+||+.||.+++|....+....+..+ . .+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~----~~~~k~~v~~v~r~~-sHp~-~~~Yltgs~dgsv~~~~w~~~~~v~~~rt-~-g~s 2252 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGA----SVMIKHPVENVRRMT-SHPS-DPYYLTGSQDGSVRMFEWGHGQQVVCFRT-A-GNS 2252 (2439)
T ss_pred ccCCcccCCccccceecccc----eeEeecccCceeeec-CCCC-CceEEecCCCceEEEEeccCCCeEEEeec-c-Ccc
Confidence 34444445555544443221 112333445566665 3454 35677999999999998765543222222 2 238
Q ss_pred CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEe--
Q 022111 104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASC-- 181 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-- 181 (302)
+|+.+.|+.+ |.....+..||.+.+|...+. ... -.+.|........|-. ..++++
T Consensus 2253 ~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~~pk---~~~-s~qchnk~~~Df~Fi~----------------s~~~tag~ 2310 (2439)
T KOG1064|consen 2253 RVTRSRFNHQ--GNKFGIVDGDGDLSLWQASPK---PYT-SWQCHNKALSDFRFIG----------------SLLATAGR 2310 (2439)
T ss_pred hhhhhhhccc--CCceeeeccCCceeecccCCc---cee-ccccCCccccceeeee----------------hhhhcccc
Confidence 8999999876 667999999999999987621 111 1134555555555431 234554
Q ss_pred -eCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCc
Q 022111 182 -GCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP 260 (302)
Q Consensus 182 -~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (302)
+.++++.+||..-... ..+++ ..|.+.+++++|.|.. +.|+||+.+|.+++||++..+ +...+.
T Consensus 2311 s~d~~n~~lwDtl~~~~-~s~v~--~~H~~gaT~l~~~P~~----qllisggr~G~v~l~D~rqrq------l~h~~~-- 2375 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLPPM-NSLVH--TCHDGGATVLAYAPKH----QLLISGGRKGEVCLFDIRQRQ------LRHTFQ-- 2375 (2439)
T ss_pred CCCCCcccchhcccCcc-cceee--eecCCCceEEEEcCcc----eEEEecCCcCcEEEeehHHHH------HHHHhh--
Confidence 3477899999643211 12333 7899999999999985 789999999999999998532 111221
Q ss_pred EEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 261 VWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 261 v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
. +. ...+++.++.. .++||++.+.+-
T Consensus 2376 ~----~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2376 A----LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred h----hh-hhheeeccCcccceEEEEccccch
Confidence 1 33 45678888777 799999876543
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=5.4e-07 Score=80.10 Aligned_cols=249 Identities=17% Similarity=0.218 Sum_probs=138.9
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-----------CCeEEEE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-----------DGQVIIW 84 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----------D~~i~iw 84 (302)
-+.|||-|.+|+|-= -.-|.+|.-.. ...+..+ .|. .|.-+.|||. .+||+|-|. ...++||
T Consensus 215 yv~wSP~GTYL~t~H-k~GI~lWGG~~--f~r~~RF-~Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFH-KQGIALWGGES--FDRIQRF-YHP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eEEecCCceEEEEEe-ccceeeecCcc--HHHHHhc-cCC-CceeeecCCc--cceEEEecCCccccCcccCCCceEEEE
Confidence 378999999999864 44588996432 3334444 466 4788999875 689998764 2679999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
|+.++........+......-.-+.||.| .+++|.... +.|.||+..+ +.+..........|....|+|....-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~D--dKy~Arm~~-~sisIyEtps---f~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHD--DKYFARMTG-NSISIYETPS---FMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccC--CceeEEecc-ceEEEEecCc---eeeecccccCCccccCcccCCCcceE
Confidence 99887432222223222223335578887 567887765 5788887643 22222111223456667777753110
Q ss_pred c-----------eeecccCC----------------------CceeEEE----------eeCCCcEEEEEEecCcccccc
Q 022111 165 A-----------LVGLGLLD----------------------PVQKLAS----------CGCDNTVKVWKMYNGIWKMDC 201 (302)
Q Consensus 165 ~-----------~~~~~~~~----------------------~~~~l~s----------~~~D~~v~iwd~~~~~~~~~~ 201 (302)
+ -+++...+ +|.+|+. .|.-.++.|+.++...-.+..
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 0 01111000 1222221 111123334444332111111
Q ss_pred ccccccCCCceeEEEeeCCCCCCccEEE--EEec-CCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEEEe-
Q 022111 202 FPALQMHSDWVRSVAWAPNLGLPKSTIA--SASQ-DGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLAVA- 276 (302)
Q Consensus 202 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~--s~s~-D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la~~- 276 (302)
-.-++.|...+|-|.| +.++ +|-. -.++++|.+..+...+ .+...+ +.....+.|||.|+++++|
T Consensus 442 ----velke~vi~FaWEP~g----dkF~vi~g~~~k~tvsfY~~e~~~~~~--~lVk~~dk~~~N~vfwsPkG~fvvva~ 511 (698)
T KOG2314|consen 442 ----VELKESVIAFAWEPHG----DKFAVISGNTVKNTVSFYAVETNIKKP--SLVKELDKKFANTVFWSPKGRFVVVAA 511 (698)
T ss_pred ----eecchheeeeeeccCC----CeEEEEEccccccceeEEEeecCCCch--hhhhhhcccccceEEEcCCCcEEEEEE
Confidence 1134668889999986 3333 3332 3479999887533222 222333 2346789999999999887
Q ss_pred --cCC-ceEEeeec
Q 022111 277 --DAN-NVTLWKEA 287 (302)
Q Consensus 277 --~~d-~i~~w~~~ 287 (302)
+.. .+.++|+.
T Consensus 512 l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 512 LVSRRGDLEFYDTD 525 (698)
T ss_pred ecccccceEEEecc
Confidence 334 68888864
No 264
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=1.1e-08 Score=93.24 Aligned_cols=229 Identities=21% Similarity=0.303 Sum_probs=144.9
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc--CeEEEEeeCCC-CCCEEEEEeCCCeEEEEEcC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG--PVWQVAWAHPK-FGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~--~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~~ 87 (302)
...+..+.++|.|+-+|.++.-| +.+.|+..... +..-+. |.. .|-.+.|++.. .+..+++.+. ....+|.+.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-PPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC-Cceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhh
Confidence 34566778889898777776554 56667654322 222221 322 24567776521 2335666554 445688875
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
..........+-+|...|+.+-|+|.. ...+++++.|..+..||++.... .......-| ...+.++|+.-.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~-s~asqVkwnyk~------ 170 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWR-SAASQVKWNYKD------ 170 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCc-ceeeeeccc-ccCceeeecccC------
Confidence 433323334566899999999999874 45899999999999999985321 111111112 234567786432
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 247 (302)
..+...+..+.|++||++.+. ..+..+++|...|+.++|+.-. ...+.+.+.|++++.||......
T Consensus 171 --------p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~---~s~~~s~~~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 171 --------PNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFK---YSEIMSSSNDGTVKFWDYSKSTT 236 (1081)
T ss_pred --------cchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhh---hhhhcccCCCCceeeeccccccc
Confidence 234455667889999998774 4456778899999999997643 35689999999999999875433
Q ss_pred ceeeeeeccCCCcEEEEEEcc
Q 022111 248 QWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~sp 268 (302)
.+...+ .-..+||--.|-|
T Consensus 237 e~~~~v--tt~~piw~~r~~P 255 (1081)
T KOG0309|consen 237 ESKRTV--TTNFPIWRGRYLP 255 (1081)
T ss_pred ccceec--cccCcceeccccc
Confidence 332222 2234566666655
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.87 E-value=6.7e-08 Score=82.48 Aligned_cols=156 Identities=15% Similarity=0.123 Sum_probs=97.7
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCC--ceEEEEecCcccCeEEEEeeCCC-CCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSA--SQHLATLKGHRGPVWQVAWAHPK-FGSILASCSYDGQVIIWKEGNQNDWT 93 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~D~~i~iwd~~~~~~~~ 93 (302)
+..++.++++|.+..++...++++.... .+.+..... ...-+++.|.... ...+.-..+....+.+|.....
T Consensus 68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~---- 142 (390)
T KOG3914|consen 68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG---- 142 (390)
T ss_pred cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc----
Confidence 4456778899988888887777764332 222222211 1112233433221 1122223345555666655432
Q ss_pred EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111 94 QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD 173 (302)
Q Consensus 94 ~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 173 (302)
+....-+|-..+..++|+|| ...+++++.|..|++-.... ...+..+-.+|+.-|.+++.-+
T Consensus 143 ~~~~~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa--~f~IesfclGH~eFVS~isl~~-------------- 204 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPA--TFVIESFCLGHKEFVSTISLTD-------------- 204 (390)
T ss_pred CcchhhhhhhhhheeeecCC--CCEEEEecCCceEEEEecCc--ccchhhhccccHhheeeeeecc--------------
Confidence 22334579999999999999 46999999999999843321 2222223347888888887654
Q ss_pred CceeEEEeeCCCcEEEEEEecCc
Q 022111 174 PVQKLASCGCDNTVKVWKMYNGI 196 (302)
Q Consensus 174 ~~~~l~s~~~D~~v~iwd~~~~~ 196 (302)
+..|+|+|.|++|++||+.++.
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred -CceeeecCCCCcEEEEecccCC
Confidence 3568999999999999999873
No 266
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=8.7e-06 Score=81.45 Aligned_cols=247 Identities=10% Similarity=0.059 Sum_probs=138.9
Q ss_pred EEEEccC-CCEEEEeeCCCcEEEEeecCCCceEEEEecC--c------------ccCeEEEEeeCCCCCC-EEEEEeCCC
Q 022111 16 DVAMDFY-GKRLATASSDSSIKIIGLSNSASQHLATLKG--H------------RGPVWQVAWAHPKFGS-ILASCSYDG 79 (302)
Q Consensus 16 ~~~~s~~-~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~--h------------~~~v~~v~~~~~~~~~-~l~s~s~D~ 79 (302)
.++++++ ++.+++-...+.|+++|.... .+..+.+ . -..-..|++.++ ++ ++++-...+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~--gn~LYVaDt~n~ 646 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAK--KNLLYVADTENH 646 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeCC--CCEEEEEeCCCc
Confidence 5677764 556666667788999987542 2222221 1 112356777653 44 445555667
Q ss_pred eEEEEEcCCCCceeEEEEecC----------C-------CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee
Q 022111 80 QVIIWKEGNQNDWTQAHTFND----------H-------KSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT 142 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~----------h-------~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~ 142 (302)
.|+.+|..++. +.++.+ . -.....++++|+. +.++++.+.++.|++|+..... ....
T Consensus 647 ~Ir~id~~~~~----V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~-g~LyVad~~~~~I~v~d~~~g~-v~~~ 720 (1057)
T PLN02919 647 ALREIDFVNET----VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN-EKVYIAMAGQHQIWEYNISDGV-TRVF 720 (1057)
T ss_pred eEEEEecCCCE----EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-CeEEEEECCCCeEEEEECCCCe-EEEE
Confidence 89999876542 222211 0 1123578999853 5677777888899999875321 1100
Q ss_pred eec------ccC------CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccc---------c
Q 022111 143 RID------QAH------PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---------C 201 (302)
Q Consensus 143 ~~~------~~h------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---------~ 201 (302)
.-. .++ ......++++|++ +..+++-+.++.|++||+.++..... .
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-------------~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~ 787 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDL-------------KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN 787 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCC-------------CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence 000 000 0112334454432 23667777889999999876421100 0
Q ss_pred ccccccC--------CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee----------eccCCCcEEE
Q 022111 202 FPALQMH--------SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV----------LKDFKTPVWS 263 (302)
Q Consensus 202 ~~~~~~h--------~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~----------~~~~~~~v~~ 263 (302)
...+..+ -..-..++++|++ +.+++-+.++.|++||............ ....-.....
T Consensus 788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG----~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 788 LFKFGDHDGVGSEVLLQHPLGVLCAKDG----QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cccccCCCCchhhhhccCCceeeEeCCC----cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 0011101 0123578888885 6788889999999999864311000000 0001124678
Q ss_pred EEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111 264 VSWSLTGNLLAVADAN-NVTLWKEAVDG 290 (302)
Q Consensus 264 ~~~spdg~~la~~~~d-~i~~w~~~~~~ 290 (302)
|+++++|+++++-..+ .|++|+.....
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 9999999977766666 69999986543
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=1.8e-07 Score=85.38 Aligned_cols=241 Identities=18% Similarity=0.341 Sum_probs=151.9
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCc-------------eEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS-------------QHLATLKGHRGPVWQVAWAHPKFGSILASCS 76 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~-------------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s 76 (302)
......++.|+....++|.||.||.+++..+.+.+. ..-+++.||.+.|.-+.|+.. ...|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccC
Confidence 445678899999889999999999999998753221 112467899999999999743 46788888
Q ss_pred CCCeEEEEEcCCCCceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEE
Q 022111 77 YDGQVIIWKEGNQNDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSV 155 (302)
Q Consensus 77 ~D~~i~iwd~~~~~~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~ 155 (302)
.+|.|.+|-+-.+ .|. -..++. .+..|.+++|+.| |..++..-.||.|.+=.+....-|. ..+. ......+
T Consensus 91 t~GlIiVWmlykg-sW~-EEMiNnRnKSvV~SmsWn~d--G~kIcIvYeDGavIVGsvdGNRIwg-KeLk---g~~l~hv 162 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKG-SWC-EEMINNRNKSVVVSMSWNLD--GTKICIVYEDGAVIVGSVDGNRIWG-KELK---GQLLAHV 162 (1189)
T ss_pred CCceEEEEeeecc-cHH-HHHhhCcCccEEEEEEEcCC--CcEEEEEEccCCEEEEeeccceecc-hhcc---hheccce
Confidence 9999999987543 231 122222 4567889999987 7788888888888774443111111 1121 1224577
Q ss_pred EeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc---cccccc----cccccCCCceeEEEeeCC--CC--CC
Q 022111 156 SWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI---WKMDCF----PALQMHSDWVRSVAWAPN--LG--LP 224 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~---~~~~~~----~~~~~h~~~v~~v~~~p~--~~--~~ 224 (302)
.|+++. ++++-+-..|.+.++|..... ...+|. ..++.....|..+.|... +. .+
T Consensus 163 ~ws~D~--------------~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd 228 (1189)
T KOG2041|consen 163 LWSEDL--------------EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD 228 (1189)
T ss_pred eecccH--------------HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC
Confidence 898864 444555556888999865431 011121 111212223677777521 10 12
Q ss_pred ccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111 225 KSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 278 (302)
.-.|+.+=..|.+.|- +.+.++-. . +.+-.-.+....|+++|..||+++-
T Consensus 229 rP~lavcy~nGr~QiM--R~eND~~P-v-v~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 229 RPRLAVCYANGRMQIM--RSENDPEP-V-VVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred CCEEEEEEcCceehhh--hhcCCCCC-e-EEecccEeecceecCCCcEEEEccC
Confidence 3568888788888774 33332211 1 2233356888999999999999854
No 268
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.83 E-value=4.7e-06 Score=81.98 Aligned_cols=253 Identities=16% Similarity=0.278 Sum_probs=148.4
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecC-------------CCceE--------EEEecC---------------
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-------------SASQH--------LATLKG--------------- 53 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-------------~~~~~--------~~~~~~--------------- 53 (302)
-...|.+++||||++.||....++++.+...+- +..++ -.+|.|
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 346789999999999999988888888764310 00000 011111
Q ss_pred ---------cccCeEEEEeeCCCCCCEEEEEeC----C--CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcE
Q 022111 54 ---------HRGPVWQVAWAHPKFGSILASCSY----D--GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLS 118 (302)
Q Consensus 54 ---------h~~~v~~v~~~~~~~~~~l~s~s~----D--~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~ 118 (302)
+...-..|+|.. ||.++|..+. + +.+|+|+-+ + ....+-..-.+--.+++|.|. |.+
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRG--DG~yFAVss~~~~~~~~R~iRVy~Re-G---~L~stSE~v~gLe~~l~WrPs--G~l 270 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRG--DGEYFAVSSVEPETGSRRVIRVYSRE-G---ELQSTSEPVDGLEGALSWRPS--GNL 270 (928)
T ss_pred CccccCccccCCCceEEEECC--CCcEEEEEEEEcCCCceeEEEEECCC-c---eEEeccccCCCccCCccCCCC--CCE
Confidence 222334688864 4899887664 2 679999754 2 122222222334467899997 667
Q ss_pred EEEEec---CCcEEEEEecCCCCeeee--eecc-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE
Q 022111 119 LACGSS---DGNISVFTATADGGWDTT--RIDQ-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM 192 (302)
Q Consensus 119 l~sg~~---d~~v~~~~~~~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~ 192 (302)
+|+.-. ...|.+|.-+ | .... .++. .....|..+.|+++. ..||..-.|. |.+|-.
T Consensus 271 IA~~q~~~~~~~VvFfErN--G-LrhgeF~l~~~~~~~~v~~l~Wn~ds--------------~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFERN--G-LRHGEFTLRFDPEEEKVIELAWNSDS--------------EILAVWLEDR-VQLWTR 332 (928)
T ss_pred EEEEEEcCCCcEEEEEecC--C-cEeeeEecCCCCCCceeeEEEECCCC--------------CEEEEEecCC-ceEEEe
Confidence 777654 2455566432 1 1111 1111 234568999999864 6777766555 999998
Q ss_pred ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc----CC-----cceeee-------ee--
Q 022111 193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK----EG-----EQWEGR-------VL-- 254 (302)
Q Consensus 193 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~----~~-----~~~~~~-------~~-- 254 (302)
.+-.|=++....+.. ...+..+.|+|.. +..|...+.++.+..++..- .. +.-... .+
T Consensus 333 ~NYHWYLKqei~~~~-~~~~~~~~Wdpe~---p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTp 408 (928)
T PF04762_consen 333 SNYHWYLKQEIRFSS-SESVNFVKWDPEK---PLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTP 408 (928)
T ss_pred eCCEEEEEEEEEccC-CCCCCceEECCCC---CCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEec
Confidence 776654433222222 2234559999974 46677777767665555421 10 000000 00
Q ss_pred --------------ccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceE
Q 022111 255 --------------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEW 292 (302)
Q Consensus 255 --------------~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~ 292 (302)
-.+..+|..++|++++..+++-..| .+.+|.......|
T Consensus 409 f~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 409 FRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred ccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 1234679999999998877777777 5999885444333
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.80 E-value=2.3e-07 Score=79.28 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=94.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCc-eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc
Q 022111 68 FGSILASCSYDGQVIIWKEGNQND-WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ 146 (302)
Q Consensus 68 ~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~ 146 (302)
.+++||.+-.++...+++...... .+....+.. ...-+++.|..++. .+..+...|-++.+|.-....+.... ..
T Consensus 73 ~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~--sv~v~dkagD~~~~di~s~~~~~~~~-~l 148 (390)
T KOG3914|consen 73 SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDT--SVLVADKAGDVYSFDILSADSGRCEP-IL 148 (390)
T ss_pred CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccc--eEEEEeecCCceeeeeecccccCcch-hh
Confidence 477888887788877777654432 233333222 12234444444322 23333333333333332111112122 23
Q ss_pred cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccc-cccCCCceeEEEeeCCCCCCc
Q 022111 147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPA-LQMHSDWVRSVAWAPNLGLPK 225 (302)
Q Consensus 147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~ 225 (302)
+|..-++.++|+|+. ++|+++-.|..|||-..... -.+.. +-||+.+|..++.-++
T Consensus 149 GhvSml~dVavS~D~--------------~~IitaDRDEkIRvs~ypa~----f~IesfclGH~eFVS~isl~~~----- 205 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDD--------------QFIITADRDEKIRVSRYPAT----FVIESFCLGHKEFVSTISLTDN----- 205 (390)
T ss_pred hhhhhhheeeecCCC--------------CEEEEecCCceEEEEecCcc----cchhhhccccHhheeeeeeccC-----
Confidence 788888999999864 89999999999999665432 11222 3589999999999876
Q ss_pred cEEEEEecCCeEEEEEeccCC
Q 022111 226 STIASASQDGTVVIWTCAKEG 246 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~~~ 246 (302)
..|+|+|.|++||+||+.+..
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred ceeeecCCCCcEEEEecccCC
Confidence 569999999999999998753
No 270
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.79 E-value=1.5e-08 Score=59.03 Aligned_cols=37 Identities=38% Similarity=0.808 Sum_probs=33.7
Q ss_pred cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 201 CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 201 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
++.++.+|.+.|++|+|+|++ .+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~----~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDG----NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTS----SEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEeccc----ccceeeCCCCEEEEEC
Confidence 456788999999999999994 8899999999999997
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.2e-08 Score=88.78 Aligned_cols=206 Identities=17% Similarity=0.274 Sum_probs=125.3
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
+.||+..|..++--.+.+-+++++.|++|++|.+..+ +..+-.+...|+.+|.++.|-.+ -+++++ -|+-|
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIAS--CDGGI 806 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeee--ccCcc
Confidence 6699998888765445667889999999999998532 22355677899999999999753 355654 58899
Q ss_pred EEEEcCCCCceeEEEE--ecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeee-eee-c-ccCCCCeEEEE
Q 022111 82 IIWKEGNQNDWTQAHT--FNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDT-TRI-D-QAHPVGVTSVS 156 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~--~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~-~~~-~-~~h~~~v~~~~ 156 (302)
.+||.--+.....+.- -.+..+.|.|+.- -+ ....+|.|+...+|+++|.+... |.. ..+ . .+....+++++
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~-~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VD-RHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEeccc-Cc-chheeeeccchhhheeeeccccc-ceeeEEeccCCCCchheeEEE
Confidence 9999743321111111 1122345565531 12 23456666889999999987432 221 111 0 01223455555
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT 236 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~ 236 (302)
..+. |..++.+-..|.|-+.|.+++. .+......+.....++ .|. .+.++....|.+
T Consensus 884 Va~~--------------GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-aps----dq~L~~saldHs 940 (1034)
T KOG4190|consen 884 VADK--------------GNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APS----DQALAQSALDHS 940 (1034)
T ss_pred eccC--------------cchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-Cch----hHHHHhhcccce
Confidence 4443 5778888888999999998873 2222222221122222 122 256777888888
Q ss_pred EEE-EEe
Q 022111 237 VVI-WTC 242 (302)
Q Consensus 237 i~i-wd~ 242 (302)
+.+ |..
T Consensus 941 laVnWha 947 (1034)
T KOG4190|consen 941 LAVNWHA 947 (1034)
T ss_pred eEeeehh
Confidence 888 754
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=4.4e-06 Score=68.18 Aligned_cols=202 Identities=16% Similarity=0.105 Sum_probs=122.1
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
.+||.|+.-|...+|...+... ..+.-..|+.-|.-+.=.-| ....+..++.|.++++++++.+.... +.|.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~--h~~~cd~snn~v~~~~r~cd-~~~~~~i~sndht~k~~~~~~~s~~~-----~~h~ 156 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG--HLYQCDVSNNDVTLVKRYCD-LKFPLNIASNDHTGKTMVVSGDSNKF-----AVHN 156 (344)
T ss_pred cEEEeccccceeeeecccCccc--ceeeecccccchhhhhhhcc-cccceeeccCCcceeEEEEecCcccc-----eeec
Confidence 4789999999999998865421 22222233332221110011 12246677889999999886432111 1232
Q ss_pred C--CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111 150 V--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 150 ~--~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 227 (302)
. .+.++.++++ ++++++.+..+.|.+|.+......... .....-++.-.+.+|+... ..
T Consensus 157 ~~~~~ns~~~snd--------------~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~----~~ 217 (344)
T KOG4532|consen 157 QNLTQNSLHYSND--------------PSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSEND----LQ 217 (344)
T ss_pred cccceeeeEEcCC--------------CceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCc----ce
Confidence 2 2677777775 378888888888999988653211111 0112223344788888763 78
Q ss_pred EEEEecCCeEEEEEeccCCcce--eeeeeccCCCcEEEEEEccCC--CEEEEecCC-ceEEeeecCCceEEEeeecC
Q 022111 228 IASASQDGTVVIWTCAKEGEQW--EGRVLKDFKTPVWSVSWSLTG--NLLAVADAN-NVTLWKEAVDGEWQQVSVVE 299 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~spdg--~~la~~~~d-~i~~w~~~~~~~~~~~~~~~ 299 (302)
+|++.+||++.|||++...-+- .......|.+.+..+.|+|-| .+|....+- .+++-|+- ++.-++..++-
T Consensus 218 FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R-~~~~~q~I~i~ 293 (344)
T KOG4532|consen 218 FAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR-NYVNHQVIVIP 293 (344)
T ss_pred EEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc-cCceeeEEecC
Confidence 9999999999999998643211 011224577889999999866 455454444 58888874 44455555443
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-07 Score=78.50 Aligned_cols=225 Identities=13% Similarity=0.231 Sum_probs=125.2
Q ss_pred ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCC------------CCeeEEEecCCCCCcEEE
Q 022111 55 RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHK------------SSVNSIAWAPHELGLSLA 120 (302)
Q Consensus 55 ~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~------------~~i~~l~~~pd~~~~~l~ 120 (302)
...|+++.|.. .|.+|++|...|.+.++.-+.... .+-...|+.|. .+|..+.|..+..-..++
T Consensus 26 ad~ItaVefd~--tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 26 ADKITAVEFDE--TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cceeeEEEecc--ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 35688999964 389999999999999997543221 00111233443 578888997553223566
Q ss_pred EEecCCcEEEEEecCCCC-------------------e------eeeeecccCCCCeEEEE---eCCCCCCCceeecccC
Q 022111 121 CGSSDGNISVFTATADGG-------------------W------DTTRIDQAHPVGVTSVS---WAPAMAPGALVGLGLL 172 (302)
Q Consensus 121 sg~~d~~v~~~~~~~~~~-------------------~------~~~~~~~~h~~~v~~~~---~~~~~~~~~~~~~~~~ 172 (302)
..+.|++|++|.+....- . ...++ .|...+-+.. .-...++..+.++.+.
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprl--s~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRL--SEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccc--cccceEEEeccceeccccceeEeeeeeec
Confidence 667899999998753310 0 00000 0111111100 0000111111122222
Q ss_pred CCceeEEEeeCCCcEEEEEEecCccccccccccccC-----CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCC-
Q 022111 173 DPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMH-----SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEG- 246 (302)
Q Consensus 173 ~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~- 246 (302)
.+...++|+ .|=.|.+|++.-....+..+ ....| ..-|++..|+|.. -+.+.-.+..|+|++-|++...
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp~~---cn~fmYSsSkG~Ikl~DlRq~al 256 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHPEM---CNVFMYSSSKGEIKLNDLRQSAL 256 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCHhH---cceEEEecCCCcEEehhhhhhhh
Confidence 233445544 56678899875432111111 11222 2458899999974 3678888889999999998421
Q ss_pred ----cceeee--------eeccCCCcEEEEEEccCCCEEEEecCCceEEeeecC
Q 022111 247 ----EQWEGR--------VLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 247 ----~~~~~~--------~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
...... ...+....|..+.|+|+|++|++-+=.+++|||...
T Consensus 257 cdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm 310 (460)
T COG5170 257 CDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNM 310 (460)
T ss_pred ccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccc
Confidence 000000 001112357778999999998876555899999754
No 274
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.71 E-value=7.8e-08 Score=55.91 Aligned_cols=38 Identities=34% Similarity=0.752 Sum_probs=34.6
Q ss_pred eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
+++.++.+|.+.|++|+|+++ +++|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence 467789999999999999875 78999999999999997
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.65 E-value=1.2e-05 Score=79.15 Aligned_cols=236 Identities=16% Similarity=0.291 Sum_probs=135.9
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEE----eecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKII----GLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw----~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
.+.|.++.+-++...++.+..+|.|.+. +......+.+..+ ...|.+++|||+ ..+||.+..++++.+..-
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD--~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPD--EELLALVTGEGNLLLMTR 149 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCC--cCEEEEEeCCCEEEEEec
Confidence 3578888888888888889999999999 5444434444444 567999999986 688888888888888642
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCC-cEEEEEecCCcEEEEEecCCCC-----eeee--eeccc---CCCCeEEE
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELG-LSLACGSSDGNISVFTATADGG-----WDTT--RIDQA---HPVGVTSV 155 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~-~~l~sg~~d~~v~~~~~~~~~~-----~~~~--~~~~~---h~~~v~~~ 155 (302)
.+.++.... +.+++.| ...++.++.++=.-|..+.++. .+.. ....+ +...-..+
T Consensus 150 ----~fd~i~E~~----------l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~I 215 (928)
T PF04762_consen 150 ----DFDPISEVP----------LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRI 215 (928)
T ss_pred ----cceEEEEee----------cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEE
Confidence 122332222 2222111 1233334433322222211110 0000 00001 22244567
Q ss_pred EeCCCCCCCceeecccCCCceeEEEeeC---C---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEE
Q 022111 156 SWAPAMAPGALVGLGLLDPVQKLASCGC---D---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIA 229 (302)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~---D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 229 (302)
+|-.+ |.++|..+. + +.+|||+-. +.. ..+...-.+--.+++|-|.| +.||
T Consensus 216 SWRGD--------------G~yFAVss~~~~~~~~R~iRVy~Re-G~L----~stSE~v~gLe~~l~WrPsG----~lIA 272 (928)
T PF04762_consen 216 SWRGD--------------GEYFAVSSVEPETGSRRVIRVYSRE-GEL----QSTSEPVDGLEGALSWRPSG----NLIA 272 (928)
T ss_pred EECCC--------------CcEEEEEEEEcCCCceeEEEEECCC-ceE----EeccccCCCccCCccCCCCC----CEEE
Confidence 78654 467666653 2 578889843 321 11111112223578999996 6787
Q ss_pred EEec---CCeEEEEEeccCCcceeeeeec---cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceE
Q 022111 230 SASQ---DGTVVIWTCAKEGEQWEGRVLK---DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEW 292 (302)
Q Consensus 230 s~s~---D~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~ 292 (302)
+.-. ...|.+|.-.. .+.+.+.. .....|..++||+|+.+||+.-.+.|.||-.. |-.|
T Consensus 273 ~~q~~~~~~~VvFfErNG---LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~-NYHW 337 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERNG---LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRS-NYHW 337 (928)
T ss_pred EEEEcCCCcEEEEEecCC---cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEee-CCEE
Confidence 7754 33566664332 22223222 22456899999999999999988899999763 4444
No 276
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.2e-06 Score=76.22 Aligned_cols=254 Identities=16% Similarity=0.148 Sum_probs=161.3
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-CCeEEEEEc
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSY-DGQVIIWKE 86 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-D~~i~iwd~ 86 (302)
-|++.|+.+.-+ -.+++.+++.||.++-|.-.. .-.+.+.-+..|.+.|.+++.+- ++.+++|++. |+.++++|+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~--dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY--DGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc--cceeEeeccCcccceeEEEe
Confidence 488999886544 367999999999999997654 22234455678988888888764 4788899887 999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEe--cCCCC-CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAW--APHEL-GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~--~pd~~-~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
++-.- ...++.. .....+.| +|... ....++.-.++.+.++|...+.+ +......-|..+|..+.+++..
T Consensus 84 En~Dm---inmiKL~-~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~-- 156 (558)
T KOG0882|consen 84 ENFDM---INMIKLV-DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAG-- 156 (558)
T ss_pred eccch---hhhcccc-cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccc--
Confidence 65421 1111111 11122233 33211 12333444568889998765443 2223344788999999988763
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecCc--------cccc---cccccccCCCceeEEEeeCCCCCCccEEEEEe
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI--------WKMD---CFPALQMHSDWVRSVAWAPNLGLPKSTIASAS 232 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~--------~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s 232 (302)
..++|.-..|+|.-|...... +.++ .+..+.--+....++.|+|++ ..+.+-+
T Consensus 157 ------------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g----~qistl~ 220 (558)
T KOG0882|consen 157 ------------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG----AQISTLN 220 (558)
T ss_pred ------------cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc----CcccccC
Confidence 567777778999999976311 1111 111222234567899999996 7899999
Q ss_pred cCCeEEEEEeccCCccee-----------ee---------e---------eccCC-CcEEEEEEccCCCEEEEecCCceE
Q 022111 233 QDGTVVIWTCAKEGEQWE-----------GR---------V---------LKDFK-TPVWSVSWSLTGNLLAVADANNVT 282 (302)
Q Consensus 233 ~D~~i~iwd~~~~~~~~~-----------~~---------~---------~~~~~-~~v~~~~~spdg~~la~~~~d~i~ 282 (302)
.|..||+++.+..+..+. .+ + +..+. .+-..+.|...|++|+.+.-=+|+
T Consensus 221 ~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gik 300 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIK 300 (558)
T ss_pred cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEE
Confidence 999999999876431100 00 0 00011 123356788889999988665777
Q ss_pred EeeecC
Q 022111 283 LWKEAV 288 (302)
Q Consensus 283 ~w~~~~ 288 (302)
+.....
T Consensus 301 vin~~t 306 (558)
T KOG0882|consen 301 VINLDT 306 (558)
T ss_pred EEEeec
Confidence 776543
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.58 E-value=0.00018 Score=59.58 Aligned_cols=219 Identities=16% Similarity=0.287 Sum_probs=118.5
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcc---cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHR---GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
.++.+.+|+.||.- .|..|.|=.-..+-...+.+..-++ ..=+.++|+++ +.+||.+...|+|+++|+....-.
T Consensus 2 ~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccceeE
Confidence 35678899888764 5766665332211122223332222 22367999874 899999999999999998542110
Q ss_pred --eEEEEe-cCCCCCeeEEEecCCC-C---CcEEEEEecCCcEEEEEecCC--CCe-ee--eeecccCCCCeEEEEeCCC
Q 022111 93 --TQAHTF-NDHKSSVNSIAWAPHE-L---GLSLACGSSDGNISVFTATAD--GGW-DT--TRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 93 --~~~~~~-~~h~~~i~~l~~~pd~-~---~~~l~sg~~d~~v~~~~~~~~--~~~-~~--~~~~~~h~~~v~~~~~~~~ 160 (302)
.+...+ ..-...|..+.|.+.. + ...|+.-..+|.++-|-+..+ ... .. ..+...++..|+++.|.|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 011111 1134667777775321 1 225777788888888876421 111 11 2333345778999999885
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCc----------------------ccc---ccccccccCCCceeEE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI----------------------WKM---DCFPALQMHSDWVRSV 215 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~----------------------~~~---~~~~~~~~h~~~v~~v 215 (302)
.. ++-++--.+.+-..+.+.+.-+.-|.+-+.. +++ ..........+.|..+
T Consensus 159 h~---LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 159 HR---LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred CC---EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 31 1100000000000010111123344432210 000 0000112346789999
Q ss_pred EeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 216 AWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+.|||+ ..||+...+|.|.+|++-.
T Consensus 236 SlSPdg----~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 236 SLSPDG----SLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred EECCCC----CEEEEEEcCCeEEEEecCc
Confidence 999996 7899999999999999865
No 278
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.1e-05 Score=69.22 Aligned_cols=234 Identities=14% Similarity=0.211 Sum_probs=133.3
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEE-----EEeCCCeEEEEEcCCC
Q 022111 15 HDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILA-----SCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-----s~s~D~~i~iwd~~~~ 89 (302)
++..|+.|..+.| ==..+.+.+|+..+-.. .... -|...|..+.+++-.....|| ..|.-+.+|||.....
T Consensus 129 W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~-~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSIDESLAA-RLVSNEVQFYDLGSFKT-IQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccchhhhh-hhhcceEEEEecCCccc-eeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 3566776654222 22346689998765221 2222 366778888887632234444 3467788999987532
Q ss_pred CceeEE--EEecCCCCCeeEEEecCCCCCcE-EEEEecCC---------cEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 90 NDWTQA--HTFNDHKSSVNSIAWAPHELGLS-LACGSSDG---------NISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 90 ~~~~~~--~~~~~h~~~i~~l~~~pd~~~~~-l~sg~~d~---------~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
.....+ ++|- ..---.+.|++-..+.+ |++..-|+ ++.+++.. +......+ .-..+|.++.|
T Consensus 205 ~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~--g~s~~V~L--~k~GPVhdv~W 278 (566)
T KOG2315|consen 205 GQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ--GESVSVPL--LKEGPVHDVTW 278 (566)
T ss_pred cccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec--CceEEEec--CCCCCceEEEE
Confidence 211111 2221 11123456776644443 34444444 33333332 22111222 34678999999
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC---
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD--- 234 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D--- 234 (302)
+|++.. =.++-|=.-..+-|+|++.. ..+.--+++=+++-|+|.+ +.|+-++.+
T Consensus 279 ~~s~~E------------F~VvyGfMPAkvtifnlr~~-------~v~df~egpRN~~~fnp~g----~ii~lAGFGNL~ 335 (566)
T KOG2315|consen 279 SPSGRE------------FAVVYGFMPAKVTIFNLRGK-------PVFDFPEGPRNTAFFNPHG----NIILLAGFGNLP 335 (566)
T ss_pred CCCCCE------------EEEEEecccceEEEEcCCCC-------EeEeCCCCCccceEECCCC----CEEEEeecCCCC
Confidence 997521 11233444567889998643 2233345666899999986 667777654
Q ss_pred CeEEEEEeccCCcceeeeeeccCC-CcEEEEEEccCCCEEEEec-------CCceEEeeec
Q 022111 235 GTVVIWTCAKEGEQWEGRVLKDFK-TPVWSVSWSLTGNLLAVAD-------ANNVTLWKEA 287 (302)
Q Consensus 235 ~~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~spdg~~la~~~-------~d~i~~w~~~ 287 (302)
|.|-|||+...+ .+..+. ..-.-++|+|||+++++|. +++++||...
T Consensus 336 G~mEvwDv~n~K------~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 336 GDMEVWDVPNRK------LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CceEEEeccchh------hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 579999987532 112222 2345689999999998873 2479999864
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.57 E-value=2.8e-05 Score=68.80 Aligned_cols=246 Identities=12% Similarity=0.133 Sum_probs=136.9
Q ss_pred ceeEEEEccCCCEEEEeeCCC---------------cEEEEeecCCCceEEEEecCcccC--eE-EEEeeCCCCCCEEEE
Q 022111 13 TVHDVAMDFYGKRLATASSDS---------------SIKIIGLSNSASQHLATLKGHRGP--VW-QVAWAHPKFGSILAS 74 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~---------------~v~lw~~~~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s 74 (302)
.|.-+.|+|.+++|.+-+... .+.+||..++ ..+..+..-..+ .+ -++|+.+ .+++|-
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~--D~y~AR 148 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSID--DKYVAR 148 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeec--chhhhh
Confidence 467788999999999876433 4899998664 455566554444 55 6778754 455554
Q ss_pred EeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEE-----EecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC-----GSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 75 ~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~s-----g~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
. ....+.|+++..+-...+.+.+. ..-|....|+|.+++..||. ...+..+++|.+..........+- .
T Consensus 149 v-v~~sl~i~e~t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf---k 222 (561)
T COG5354 149 V-VGSSLYIHEITDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF---K 222 (561)
T ss_pred h-ccCeEEEEecCCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE---e
Confidence 4 33568999873322112222322 24577888888755544443 345667888877533322221111 1
Q ss_pred CCeEEEEeCCCCCCCceeecc--cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111 150 VGVTSVSWAPAMAPGALVGLG--LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 150 ~~v~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 227 (302)
..-..+.|.+.+. ..++.+. ...+..++ ...+++|+++.... ++...+-.++|.+.+|+|.+. +=-
T Consensus 223 ~~~~qLkW~~~g~-~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~--~F~ 290 (561)
T COG5354 223 VSGVQLKWQVLGK-YLLVLVMTHTKSNKSYF----GESNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSS--RFA 290 (561)
T ss_pred ecccEEEEecCCc-eEEEEEEEeeeccccee----ccceEEEEeecccc-----cceeccccccceeeeecccCC--cee
Confidence 1123567776542 1111110 10111111 13568888887432 222224578999999999862 122
Q ss_pred EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC----ceEEeee
Q 022111 228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN----NVTLWKE 286 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d----~i~~w~~ 286 (302)
+++|-++..+.++|++.+- + .-....+=..+-|||.+++++.++=+ ++-+|+.
T Consensus 291 vi~g~~pa~~s~~~lr~Nl-----~-~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 291 VISGYMPASVSVFDLRGNL-----R-FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred EEecccccceeecccccce-----E-EecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 4455589999999987541 1 11122233445677777776665332 3666664
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.56 E-value=8.9e-05 Score=65.29 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=98.9
Q ss_pred CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-eEEEEEcCCCCceeEEEEecC
Q 022111 22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG-QVIIWKEGNQNDWTQAHTFND 100 (302)
Q Consensus 22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-~i~iwd~~~~~~~~~~~~~~~ 100 (302)
+|.+++..|. |+..|.+...+. . .++ +|.+.|.-.++..+ ++-++.|..|| .+-|+|.+.+ .++.+..
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~--~-iqv-~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~----e~kr~e~ 399 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGY--S-IQV-GKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGG----EVKRIEK 399 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCe--e-EEc-CCCCceEEEEEccC--CcceEEeccCCceEEEEecCCc----eEEEeeC
Confidence 4777777764 556676654322 2 223 57777877777644 55678888888 8999998764 4567777
Q ss_pred CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111 101 HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180 (302)
Q Consensus 101 h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s 180 (302)
.-+.|.++..+|+ |+.++.+.....+.++|+.+++. ..+.+....-|+...|+|+. +.||-
T Consensus 400 ~lg~I~av~vs~d--GK~~vvaNdr~el~vididngnv---~~idkS~~~lItdf~~~~ns--------------r~iAY 460 (668)
T COG4946 400 DLGNIEAVKVSPD--GKKVVVANDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNS--------------RWIAY 460 (668)
T ss_pred CccceEEEEEcCC--CcEEEEEcCceEEEEEEecCCCe---eEecccccceeEEEEEcCCc--------------eeEEE
Confidence 8899999999998 78888888777888888875532 22333445668999999864 55555
Q ss_pred eeCCC----cEEEEEEec
Q 022111 181 CGCDN----TVKVWKMYN 194 (302)
Q Consensus 181 ~~~D~----~v~iwd~~~ 194 (302)
+-.++ .|+++|+.+
T Consensus 461 afP~gy~tq~Iklydm~~ 478 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ecCcceeeeeEEEEecCC
Confidence 54444 577777754
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.53 E-value=0.00054 Score=59.99 Aligned_cols=242 Identities=11% Similarity=0.067 Sum_probs=120.1
Q ss_pred EccCCCEEEEeeC----------CCcEEEEeecCCCceEEEEecCc-------ccCeEEEEeeCCCCCCEEEEEe-C-CC
Q 022111 19 MDFYGKRLATASS----------DSSIKIIGLSNSASQHLATLKGH-------RGPVWQVAWAHPKFGSILASCS-Y-DG 79 (302)
Q Consensus 19 ~s~~~~~l~s~~~----------d~~v~lw~~~~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~~~l~s~s-~-D~ 79 (302)
++||++.|+.+.. +..|.+||..+. +.+..+.-- ...-..++++++ |++|+... . +.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~p~~ 128 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFSPSP 128 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCCCCC
Confidence 8999988877665 788999998653 344444311 111235677664 78776554 3 78
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCC--CCe-EEEE
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHP--VGV-TSVS 156 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~--~~v-~~~~ 156 (302)
.+-+.|+..++ .+.++.--. ...-+..+.+ . ..+. +.|+......+...+..........+. ..+ ....
T Consensus 129 ~V~VvD~~~~k---vv~ei~vp~-~~~vy~t~e~--~-~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~ 200 (352)
T TIGR02658 129 AVGVVDLEGKA---FVRMMDVPD-CYHIFPTAND--T-FFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA 200 (352)
T ss_pred EEEEEECCCCc---EEEEEeCCC-CcEEEEecCC--c-cEEE-eecCceEEEEecCCCceEEeeeeeecCCccccccCCc
Confidence 89999997764 233332111 1111111111 1 1111 234444333333332211110000000 000 0001
Q ss_pred eCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccc-ccccc--cc----c-CCCceeEEEeeCCCCCCccEE
Q 022111 157 WAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKM-DCFPA--LQ----M-HSDWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~-~~~~~--~~----~-h~~~v~~v~~~p~~~~~~~~l 228 (302)
+.+ .+++.+....+ |+|.+.|+....... ..... +. + ..+.+.-++++|+++ ..+
T Consensus 201 ~~~-------------~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~---~ly 263 (352)
T TIGR02658 201 YSN-------------KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD---RIY 263 (352)
T ss_pred eEc-------------CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC---EEE
Confidence 111 12455544444 999999964321110 11111 11 1 223334499999862 333
Q ss_pred EEEe---------cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCC-EEEEecC--CceEEeeecCCceEE
Q 022111 229 ASAS---------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGN-LLAVADA--NNVTLWKEAVDGEWQ 293 (302)
Q Consensus 229 ~s~s---------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la~~~~--d~i~~w~~~~~~~~~ 293 (302)
+... ..+.|.++|..+.+. ..++ .....++++++||||+ +|.++.. +.|.+.|.+......
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i--~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKR--LRKI--ELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeE--EEEE--eCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 3231 124688888765421 1222 2245799999999999 7776654 369999976544433
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=3e-06 Score=78.51 Aligned_cols=189 Identities=19% Similarity=0.236 Sum_probs=119.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
.+.+++++++ +++|+-|..+|.|++++..... .+...|+.. +.+|.+++|||.||++.|-.+-+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~----~~~~~~s~~--------~~~Gey~asCS~DGkv~I~sl~~~~ 104 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP----KTNFDHSSS--------ILEGEYVASCSDDGKVVIGSLFTDD 104 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc----ccccccccc--------ccCCceEEEecCCCcEEEeeccCCc
Confidence 3455555555 6899999999999999875432 333456543 3469999999999999998775543
Q ss_pred ceeEEEEecCCCCCeeEEEecCC---CCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPH---ELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd---~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
. ..++. ..-++.+++++|| +...++++|+..| +.++.-+--+.+....+ +...++|.++.|.
T Consensus 105 ~---~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l-~~~eG~I~~i~W~--------- 169 (846)
T KOG2066|consen 105 E---ITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVL-SEGEGPIHSIKWR--------- 169 (846)
T ss_pred c---ceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceee-ecCccceEEEEec---------
Confidence 2 22333 4578999999998 2245799999988 77764332222222222 2446789999995
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc---CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM---HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
|.++|=+..+| |+|||..+.... ..++-... -.-.-..+.|.++ . -+..+..-+|+|..++
T Consensus 170 -------g~lIAWand~G-v~vyd~~~~~~l-~~i~~p~~~~R~e~fpphl~W~~~-----~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 -------GNLIAWANDDG-VKVYDTPTRQRL-TNIPPPSQSVRPELFPPHLHWQDE-----D-RLVIGWGDSVKICSIK 233 (846)
T ss_pred -------CcEEEEecCCC-cEEEecccccee-eccCCCCCCCCcccCCCceEecCC-----C-eEEEecCCeEEEEEEe
Confidence 35666666555 999998765311 11110000 0111234677665 2 3445567788998887
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.49 E-value=2.3e-07 Score=86.63 Aligned_cols=223 Identities=15% Similarity=0.214 Sum_probs=130.5
Q ss_pred CCCcccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE-EEEEeCCC
Q 022111 1 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI-LASCSYDG 79 (302)
Q Consensus 1 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~D~ 79 (302)
|..++++..|....++++|+.+.++|+.|+..|.|+++++.++. .......|..+|+.+.=+. +|.. |.+.+...
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~--dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSV--DGSTQLTSSSSSS 1166 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--ccccccccccccccccccC--CcceeeeeccccC
Confidence 45677888899999999999999999999999999999997654 3456778999999997443 4554 44444433
Q ss_pred -eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeee-eecccCCCCeEEEEe
Q 022111 80 -QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTT-RIDQAHPVGVTSVSW 157 (302)
Q Consensus 80 -~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~ 157 (302)
-..+|++.+. ..+.++|.+. .++.|+...-...+.+. .....+||+.+....+.. .-..+....-+...|
T Consensus 1167 PlsaLW~~~s~--~~~~Hsf~ed----~~vkFsn~~q~r~~gt~--~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1167 PLSALWDASST--GGPRHSFDED----KAVKFSNSLQFRALGTE--ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred chHHHhccccc--cCcccccccc----ceeehhhhHHHHHhccc--ccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 5778998653 2345565543 56677643111123333 345678998765433220 000011112244455
Q ss_pred CCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeE
Q 022111 158 APAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTV 237 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i 237 (302)
+|.. ++++ .|| .+||++.. ..++.|......+.. .|+|.+ +.++-.++
T Consensus 1239 sP~D--------------~LIl---ndG--vLWDvR~~----~aIh~FD~ft~~~~G-~FHP~g----~eVIINSE---- 1286 (1516)
T KOG1832|consen 1239 SPCD--------------TLIL---NDG--VLWDVRIP----EAIHRFDQFTDYGGG-GFHPSG----NEVIINSE---- 1286 (1516)
T ss_pred CCCc--------------ceEe---eCc--eeeeeccH----HHHhhhhhheecccc-cccCCC----ceEEeech----
Confidence 6542 2333 233 47888865 233444433333333 588885 56666554
Q ss_pred EEEEeccCCcceeeeeeccC-CCcEEEEEEccCCCEEE
Q 022111 238 VIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTGNLLA 274 (302)
Q Consensus 238 ~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la 274 (302)
|||+++= .++... .-.-..+.|+..|+++.
T Consensus 1287 -IwD~RTF------~lLh~VP~Ldqc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1287 -IWDMRTF------KLLHSVPSLDQCAVTFNSTGDVMY 1317 (1516)
T ss_pred -hhhhHHH------HHHhcCccccceEEEeccCccchh
Confidence 8998752 111111 11234567777776553
No 284
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=6.6e-07 Score=79.64 Aligned_cols=176 Identities=18% Similarity=0.250 Sum_probs=112.9
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC----ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS 123 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~----~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~ 123 (302)
+..+.||...|+.+.-..+ .+-+++++.|+++++|.++... ...+..+++.|+.+|.++.|-.+ ...+++
T Consensus 728 L~nf~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~S-- 801 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIAS-- 801 (1034)
T ss_pred eecccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeee--
Confidence 4567899999988765322 4568899999999999985432 12356788899999999999766 335554
Q ss_pred cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc-
Q 022111 124 SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF- 202 (302)
Q Consensus 124 ~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~- 202 (302)
.|+.|.+||-=-+...........| ..+..+..-|.. +.--.++-|+...+|+++|.+...|.-...
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv-----------~~~iliAgcsaeSTVKl~DaRsce~~~E~kV 869 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENV-----------DRHILIAGCSAESTVKLFDARSCEWTCELKV 869 (1034)
T ss_pred ccCcceeecccccchhHhhhcCccc-CCCceeEecccC-----------cchheeeeccchhhheeeecccccceeeEEe
Confidence 5899999984221111100000011 111222222221 001245556889999999999876642211
Q ss_pred cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
..-.+-...+++++..|.| +.++.+-..|+|-+-|.+..
T Consensus 870 cna~~Pna~~R~iaVa~~G----N~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKG----NKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred ccCCCCchheeEEEeccCc----chhhHHhcCCcEEEEecCCC
Confidence 1112345678999998875 78999999999999998754
No 285
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.48 E-value=7.3e-05 Score=66.40 Aligned_cols=193 Identities=11% Similarity=0.109 Sum_probs=107.4
Q ss_pred CEE-EEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111 70 SIL-ASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH 148 (302)
Q Consensus 70 ~~l-~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h 148 (302)
+++ ++-..++++.+.|..+.. .+.++......-..+.++|| +.++..++.|+.|.++|+.+.... ..+..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~---~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~~~v--~~i~~-- 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNK---VVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATGKVV--ATIKV-- 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-S---EEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEE--EEEE---
T ss_pred cEEEEEecCCCEEEEEECCCCe---EEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcccEE--EEEec--
Confidence 444 455678999999987653 45566544444455778998 667888889999999999765322 23321
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccccccccc----cccCCCceeEEEeeCCCCC
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWKMDCFPA----LQMHSDWVRSVAWAPNLGL 223 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~~~~~~~----~~~h~~~v~~v~~~p~~~~ 223 (302)
.....++++++++ ++++ ++-.++.+.++|..+... +..+.. ..+.+..+..|-.+|..
T Consensus 77 G~~~~~i~~s~DG--------------~~~~v~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~-- 139 (369)
T PF02239_consen 77 GGNPRGIAVSPDG--------------KYVYVANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGR-- 139 (369)
T ss_dssp SSEEEEEEE--TT--------------TEEEEEEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSS--
T ss_pred CCCcceEEEcCCC--------------CEEEEEecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCC--
Confidence 2234667777764 5555 456789999999876421 111111 01134567777777764
Q ss_pred CccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEec--CCceEEeeecCCce
Q 022111 224 PKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVAD--ANNVTLWKEAVDGE 291 (302)
Q Consensus 224 ~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~d~i~~w~~~~~~~ 291 (302)
+.++++.-+-+.|-+-|....... .... .+.........|+|+|+++.++. ++.+-++|..+.+.
T Consensus 140 -~~fVv~lkd~~~I~vVdy~d~~~~-~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~ 206 (369)
T PF02239_consen 140 -PEFVVNLKDTGEIWVVDYSDPKNL-KVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL 206 (369)
T ss_dssp -SEEEEEETTTTEEEEEETTTSSCE-EEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE
T ss_pred -CEEEEEEccCCeEEEEEecccccc-ceee-ecccccccccccCcccceeeecccccceeEEEeeccceE
Confidence 235555555565555454433211 1111 12234467789999999887763 34688888765433
No 286
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.45 E-value=1.7e-06 Score=70.21 Aligned_cols=148 Identities=18% Similarity=0.214 Sum_probs=87.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEec-CCCCCeeEEEecCCCCCcEEEEEec-----CCcEEEEEecCCCCeeee
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFN-DHKSSVNSIAWAPHELGLSLACGSS-----DGNISVFTATADGGWDTT 142 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-~h~~~i~~l~~~pd~~~~~l~sg~~-----d~~v~~~~~~~~~~~~~~ 142 (302)
++.++++..|+.+.+.+.+... ....++. .|.+... ...... +..+.++.. -+..+.|+++..+.+...
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~--~~~~~i~~~~~~~as-~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~ 175 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDL--ALMSRIPSIHSGSAS-RKICRH--GNSILSGGCGNWNAQDNFYANTLDPIKTLIPS 175 (319)
T ss_pred CCceEecCCCceEEEEechHHH--hhhhhcccccccccc-cceeec--ccEEecCCcceEeeccceeeeccccccccccc
Confidence 5678999999999999864311 1111111 1111111 111111 223333221 123344555432221111
Q ss_pred eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCC
Q 022111 143 RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLG 222 (302)
Q Consensus 143 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 222 (302)
. .-...|++++-.|.. +.+++.|+.||.+-+||++.... ....+..|+..|+.|-|+|..
T Consensus 176 ~---~~~~~v~~l~~hp~q-------------q~~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV~FHpk~- 235 (319)
T KOG4714|consen 176 K---KALDAVTALCSHPAQ-------------QHLVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEVHFHPKN- 235 (319)
T ss_pred c---cccccchhhhCCccc-------------ccEEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhheeccCCC-
Confidence 1 111236666655542 46788889999999999987632 234567899999999999974
Q ss_pred CCccEEEEEecCCeEEEEEec
Q 022111 223 LPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 223 ~~~~~l~s~s~D~~i~iwd~~ 243 (302)
+..|+++++||.+--||..
T Consensus 236 --p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 236 --PEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred --chheeEecCCCcEEEEcCC
Confidence 6889999999999999875
No 287
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=1.2e-06 Score=73.83 Aligned_cols=149 Identities=15% Similarity=0.259 Sum_probs=99.4
Q ss_pred EEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc--eeEEEEecCCCCC
Q 022111 27 ATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--WTQAHTFNDHKSS 104 (302)
Q Consensus 27 ~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~--~~~~~~~~~h~~~ 104 (302)
++.|.+..|-|-+++++.. ..|. -+..|.++.|.. .+++|.-|...|.|...|++..++ ..+.+.+. |...
T Consensus 228 fs~G~sqqv~L~nvetg~~---qsf~-sksDVfAlQf~~--s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ---QSFQ-SKSDVFALQFAG--SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS 300 (425)
T ss_pred ecccccceeEEEEeecccc---cccc-cchhHHHHHhcc--cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc
Confidence 5667788888888866432 2343 456788899853 368999999999999999976532 12344454 8888
Q ss_pred eeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe-eeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111 105 VNSIAWAPHELGLSLACGSSDGNISVFTATADGGW-DTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC 183 (302)
Q Consensus 105 i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 183 (302)
|+++..-.. ....|.+.+.+|+|++||.+....- ..... .+| |+..+..|.. ..+....++++|.
T Consensus 301 vtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGH---vN~~a~l~~~---------v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 301 VTSLQILQF-SQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGH---VNLSAYLPAH---------VKEEEGSIFSVGD 366 (425)
T ss_pred hhhhhhhcc-ccceEeeccCcCceeEeeehhhhcccceeee-ecc---cccccccccc---------cccccceEEEccC
Confidence 998875431 1457888999999999999854321 11222 255 2322222211 1122467889999
Q ss_pred CCcEEEEEEecCc
Q 022111 184 DNTVKVWKMYNGI 196 (302)
Q Consensus 184 D~~v~iwd~~~~~ 196 (302)
|...|||.++.+.
T Consensus 367 DcytRiWsl~~gh 379 (425)
T KOG2695|consen 367 DCYTRIWSLDSGH 379 (425)
T ss_pred eeEEEEEecccCc
Confidence 9999999998774
No 288
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.44 E-value=0.0001 Score=73.93 Aligned_cols=215 Identities=12% Similarity=0.102 Sum_probs=120.4
Q ss_pred eeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecC--c---------------ccCeEEEEeeCCCCCCEEEEE
Q 022111 14 VHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKG--H---------------RGPVWQVAWAHPKFGSILASC 75 (302)
Q Consensus 14 v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~--h---------------~~~v~~v~~~~~~~~~~l~s~ 75 (302)
...+++++++..|+.+. ..+.|+++|+.++. +.++.+ . -..-+.++|++. ++.++++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~-~g~LyVad 701 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV-NEKVYIAM 701 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC-CCeEEEEE
Confidence 46688888877665554 44678888875432 222211 0 011246888753 46788888
Q ss_pred eCCCeEEEEEcCCCCceeEEEEec---------C------CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111 76 SYDGQVIIWKEGNQNDWTQAHTFN---------D------HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140 (302)
Q Consensus 76 s~D~~i~iwd~~~~~~~~~~~~~~---------~------h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~ 140 (302)
+.++.|++||..++. +..+. + .-.....++++|+. ..++++-+.++.|++||...... .
T Consensus 702 ~~~~~I~v~d~~~g~----v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG-~~LYVADs~n~~Irv~D~~tg~~-~ 775 (1057)
T PLN02919 702 AGQHQIWEYNISDGV----TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL-KELYIADSESSSIRALDLKTGGS-R 775 (1057)
T ss_pred CCCCeEEEEECCCCe----EEEEecCCccccCCCCccccccccCccEEEEeCCC-CEEEEEECCCCeEEEEECCCCcE-E
Confidence 899999999986542 11111 1 11234678999983 23556666778999999764321 1
Q ss_pred eeeecccCCC-CeEEEEeCCCCCC------CceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc----------
Q 022111 141 TTRIDQAHPV-GVTSVSWAPAMAP------GALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP---------- 203 (302)
Q Consensus 141 ~~~~~~~h~~-~v~~~~~~~~~~~------~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~---------- 203 (302)
.... +... ......+...... ..-.++...+++..+++-+.++.|++||..++... ....
T Consensus 776 ~~~g--g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 776 LLAG--GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGK 852 (1057)
T ss_pred EEEe--cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCc
Confidence 1000 0000 0000000000000 00011222334678888888999999998765211 0000
Q ss_pred ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 204 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
...+.-.....|+++|++ +.+++-+.++.|++||+.+.
T Consensus 853 ~~~a~l~~P~GIavd~dG----~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENG----RLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccccccCCceEEEEeCCC----CEEEEECCCCEEEEEECCCC
Confidence 011122346789999985 67888889999999998753
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.41 E-value=9.1e-07 Score=71.76 Aligned_cols=74 Identities=24% Similarity=0.444 Sum_probs=60.4
Q ss_pred cceeEEEEccCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 12 DTVHDVAMDFYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 12 ~~v~~~~~s~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
+.|++++-+|.. +.+++|+.||.+-|||..+.. -+...++.|+++++.+-|. |+++..|++|++||.+-.||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FH-pk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFH-PKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheecc-CCCchheeEecCCCcEEEEcCC
Confidence 348889988865 567788899999999986542 2344578999999999995 5678899999999999999875
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.4e-06 Score=71.71 Aligned_cols=209 Identities=17% Similarity=0.178 Sum_probs=131.3
Q ss_pred cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec-CCcEEEEE
Q 022111 54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS-DGNISVFT 132 (302)
Q Consensus 54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~-d~~v~~~~ 132 (302)
|.+.|+.+.-. ..+++.+++.||.++.|.-.......-+.-+..|...|.+++.+-+ +.++.|.+. |..+++||
T Consensus 8 hrd~i~hv~~t---ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 8 HRDVITHVFPT---KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred ccceeeeEeee---hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcccceeEEE
Confidence 77777777532 3689999999999999975331112233445568899999998876 678888777 99999999
Q ss_pred ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE-EeeCCCcEEEEEEecCccccccccccccCCCc
Q 022111 133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA-SCGCDNTVKVWKMYNGIWKMDCFPALQMHSDW 211 (302)
Q Consensus 133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~ 211 (302)
+..-.......+. --+ ..+.|.... +. .-..|+ +.-.++.+.|+|-...... ....-..|..+
T Consensus 83 vEn~DminmiKL~-~lP---g~a~wv~sk--Gd--------~~s~IAVs~~~sg~i~VvD~~~d~~q--~~~fkklH~sP 146 (558)
T KOG0882|consen 83 VENFDMINMIKLV-DLP---GFAEWVTSK--GD--------KISLIAVSLFKSGKIFVVDGFGDFCQ--DGYFKKLHFSP 146 (558)
T ss_pred eeccchhhhcccc-cCC---CceEEecCC--CC--------eeeeEEeecccCCCcEEECCcCCcCc--cceecccccCc
Confidence 8743211111111 001 122332211 10 011233 3345778999987654211 11122459999
Q ss_pred eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee---------ecc---CCCcEEEEEEccCCCEEEEecCC
Q 022111 212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV---------LKD---FKTPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~---------~~~---~~~~v~~~~~spdg~~la~~~~d 279 (302)
|.++.++|.+ ..++|....|-|.-|.....-.....++ +-+ -+....++.|+|+|..++.-+.|
T Consensus 147 V~~i~y~qa~----Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D 222 (558)
T KOG0882|consen 147 VKKIRYNQAG----DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD 222 (558)
T ss_pred eEEEEeeccc----cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence 9999999985 6788998899999998763100000011 111 13456789999999999988888
Q ss_pred -ceEEeeec
Q 022111 280 -NVTLWKEA 287 (302)
Q Consensus 280 -~i~~w~~~ 287 (302)
.|+++...
T Consensus 223 rkVR~F~~K 231 (558)
T KOG0882|consen 223 RKVRGFVFK 231 (558)
T ss_pred cEEEEEEec
Confidence 79888764
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.37 E-value=0.00089 Score=55.51 Aligned_cols=203 Identities=16% Similarity=0.222 Sum_probs=111.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCce--eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111 68 FGSILASCSYDGQVIIWKEGNQNDW--TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145 (302)
Q Consensus 68 ~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~ 145 (302)
+|++||. -.|..|.|-..++.-.. ...+.-+.....-+-++|||| +.+||.+...|+|++||+.... +..+.
T Consensus 8 ~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~~---lf~I~ 81 (282)
T PF15492_consen 8 DGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGSE---LFVIP 81 (282)
T ss_pred CCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccce---eEEcC
Confidence 3666654 45666666554432110 111222233445678999999 6799999999999999986321 11221
Q ss_pred ccC------CCCeEEEEeCCCCCCCceeecccCCC-ceeEEEeeCCCcEEEEEEecCc-cccccccccc--c-CCCceeE
Q 022111 146 QAH------PVGVTSVSWAPAMAPGALVGLGLLDP-VQKLASCGCDNTVKVWKMYNGI-WKMDCFPALQ--M-HSDWVRS 214 (302)
Q Consensus 146 ~~h------~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~D~~v~iwd~~~~~-~~~~~~~~~~--~-h~~~v~~ 214 (302)
..+ ...|..+.|-+... . .. ...|+.-..+|.++=|-+..+. .......+|. . +...|++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~-s--------~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKK-S--------AQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINS 152 (282)
T ss_pred cccccCCccccceeeeEeecccc-c--------cccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeE
Confidence 111 11233444432110 0 00 2345556667777766653221 1112222332 2 4678999
Q ss_pred EEeeCCCCCCccEEEEEecCC----------eEEEEEeccCC----------ccee--------eeee--------ccCC
Q 022111 215 VAWAPNLGLPKSTIASASQDG----------TVVIWTCAKEG----------EQWE--------GRVL--------KDFK 258 (302)
Q Consensus 215 v~~~p~~~~~~~~l~s~s~D~----------~i~iwd~~~~~----------~~~~--------~~~~--------~~~~ 258 (302)
+.|+|.. .-.+++|.+.. -+.-|.+-... +... .++. ....
T Consensus 153 ~vy~p~h---~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 153 AVYHPKH---RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred EEEcCCC---CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 9999984 23455554432 25667653210 0000 0000 1123
Q ss_pred CcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 259 TPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 259 ~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
..|..|+.||||+.||+.+-. .|.||++..
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 568899999999999999877 799999743
No 292
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=0.00041 Score=62.34 Aligned_cols=95 Identities=17% Similarity=0.287 Sum_probs=58.8
Q ss_pred CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEE---ecCCeEEEEEeccCCcceeeeeeccCCCc
Q 022111 184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASA---SQDGTVVIWTCAKEGEQWEGRVLKDFKTP 260 (302)
Q Consensus 184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~---s~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 260 (302)
-.++.+|-+.+...+...+..+. +..-+.|.|+|.| .+++.+ |..|.+..+|..-..... .-..+| ..
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG----~fvvva~l~s~~g~l~F~D~~~a~~k~--~~~~eh-~~ 539 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG----RFVVVAALVSRRGDLEFYDTDYADLKD--TASPEH-FA 539 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC----cEEEEEEecccccceEEEecchhhhhh--ccCccc-cc
Confidence 45788898875433334444443 2345789999996 566655 457889999976311110 111222 23
Q ss_pred EEEEEEccCCCEEEEecC------C-ceEEeeec
Q 022111 261 VWSVSWSLTGNLLAVADA------N-NVTLWKEA 287 (302)
Q Consensus 261 v~~~~~spdg~~la~~~~------d-~i~~w~~~ 287 (302)
...+.|.|.|+|++++++ | +-+||+..
T Consensus 540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred cccceECCCCCEEEEeeehhhhccccceEEEEee
Confidence 567899999999988854 3 56777653
No 293
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=0.00082 Score=60.99 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=57.7
Q ss_pred cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCcc
Q 022111 147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKS 226 (302)
Q Consensus 147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 226 (302)
..+..+.+++++|+. +.|+.|+.||.|.+||...+... +....-..+.++|+|++ .
T Consensus 257 pL~s~v~~ca~sp~E--------------~kLvlGC~DgSiiLyD~~~~~t~------~~ka~~~P~~iaWHp~g----a 312 (545)
T PF11768_consen 257 PLPSQVICCARSPSE--------------DKLVLGCEDGSIILYDTTRGVTL------LAKAEFIPTLIAWHPDG----A 312 (545)
T ss_pred ecCCcceEEecCccc--------------ceEEEEecCCeEEEEEcCCCeee------eeeecccceEEEEcCCC----c
Confidence 456678888888864 78999999999999998765321 12233446889999996 7
Q ss_pred EEEEEecCCeEEEEEecc
Q 022111 227 TIASASQDGTVVIWTCAK 244 (302)
Q Consensus 227 ~l~s~s~D~~i~iwd~~~ 244 (302)
.|+.|+.-|.|.+||+.-
T Consensus 313 i~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEEcCCceEEEEEeec
Confidence 899999999999999854
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.32 E-value=0.00011 Score=65.12 Aligned_cols=237 Identities=15% Similarity=0.186 Sum_probs=139.1
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe-----------
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ----------- 80 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~----------- 80 (302)
-++..+++||.|.+|++.-. ..|.+|+-... ..+..+. |. .|..+.|+|. +++|+|-+....
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~--~~l~~~~-~~-~V~~~~fSP~--~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSK--AKLVRFR-HP-DVKYLDFSPN--EKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cchhheeecCcchheehhhc-cceEEccccch--hheeeee-cC-CceecccCcc--cceeeeeccCCccChhhccCCcc
Confidence 46778899999999987644 45889976443 2344443 43 5888999874 899999877555
Q ss_pred ----EEEEEcCCCCceeEEEEecCCCCC--ee-EEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeE
Q 022111 81 ----VIIWKEGNQNDWTQAHTFNDHKSS--VN-SIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVT 153 (302)
Q Consensus 81 ----i~iwd~~~~~~~~~~~~~~~h~~~--i~-~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~ 153 (302)
+.+||..++ ..+..+.....+ .. -+.|+-++. ++|-. ....+.++++... .....+.......+.
T Consensus 106 ~~n~~~vwd~~sg---~iv~sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~t~n--~~~~p~~~lr~~gi~ 177 (561)
T COG5354 106 SKNNVFVWDIASG---MIVFSFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEITDN--IEEHPFKNLRPVGIL 177 (561)
T ss_pred ccCceeEEeccCc---eeEeeccccCCcccccceeeeeecch--hhhhh-ccCeEEEEecCCc--cccCchhhcccccee
Confidence 899998775 355566655544 33 566776632 44433 3457888886321 222222111235678
Q ss_pred EEEeCCCCCCCceeecccCCCceeEEE-----eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111 154 SVSWAPAMAPGALVGLGLLDPVQKLAS-----CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 228 (302)
...|+|.+. + ..||. .+.+.+++||.+..+... ...+| .+..--.+.|++.+. +|
T Consensus 178 dFsisP~~n-~-----------~~la~~tPEk~~kpa~~~i~sIp~~s~l--~tk~l--fk~~~~qLkW~~~g~----~l 237 (561)
T COG5354 178 DFSISPEGN-H-----------DELAYWTPEKLNKPAMVRILSIPKNSVL--VTKNL--FKVSGVQLKWQVLGK----YL 237 (561)
T ss_pred eEEecCCCC-C-----------ceEEEEccccCCCCcEEEEEEccCCCee--eeeee--EeecccEEEEecCCc----eE
Confidence 888888631 1 11221 355778899888643110 00111 111113467777652 22
Q ss_pred EEEe-----------cCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC--C-ceEEeeec
Q 022111 229 ASAS-----------QDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA--N-NVTLWKEA 287 (302)
Q Consensus 229 ~s~s-----------~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--d-~i~~w~~~ 287 (302)
+.-- ...++.|.++.... .....+..++|-...|+|.++.+++.++ . .+.+++..
T Consensus 238 l~l~~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 238 LVLVMTHTKSNKSYFGESNLYLLRITERS----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred EEEEEEeeecccceeccceEEEEeecccc----cceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence 2211 12457777765321 1222356789999999999988877652 3 56666653
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.0027 Score=57.55 Aligned_cols=194 Identities=10% Similarity=0.035 Sum_probs=101.8
Q ss_pred CeEEEEeeCCCCCC-EEEEEeCC---CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEE-EEEecCC--cEE
Q 022111 57 PVWQVAWAHPKFGS-ILASCSYD---GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSL-ACGSSDG--NIS 129 (302)
Q Consensus 57 ~v~~v~~~~~~~~~-~l~s~s~D---~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l-~sg~~d~--~v~ 129 (302)
.+..-+|+|+ |+ +++..+.+ ..|.++|+.++.. ..+....+.....+|+|| |..+ .+.+.++ .|.
T Consensus 189 ~~~~p~wSpD--G~~~i~y~s~~~~~~~Iyv~dl~tg~~----~~lt~~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANK--EQTAFYYTSYGERKPTLYKYNLYTGKK----EKIASSQGMLVVSDVSKD--GSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCC--CCcEEEEEEccCCCCEEEEEECCCCcE----EEEecCCCcEEeeEECCC--CCEEEEEEccCCCcEEE
Confidence 6678899875 66 35544443 4577777765432 223234455667889998 4444 4444444 455
Q ss_pred EEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC--cEEEEEEecCcccccccccccc
Q 022111 130 VFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN--TVKVWKMYNGIWKMDCFPALQM 207 (302)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~~~~~~~~~ 207 (302)
++++... .. .++. .+........|+|++ ...+++....+ .|.+.|+.++... .+ ++.+
T Consensus 261 ~~dl~~g-~~--~~LT-~~~~~d~~p~~SPDG-------------~~I~F~Sdr~g~~~Iy~~dl~~g~~~--rl-t~~g 320 (419)
T PRK04043 261 LYDTNTK-TL--TQIT-NYPGIDVNGNFVEDD-------------KRIVFVSDRLGYPNIFMKKLNSGSVE--QV-VFHG 320 (419)
T ss_pred EEECCCC-cE--EEcc-cCCCccCccEECCCC-------------CEEEEEECCCCCceEEEEECCCCCeE--eC-ccCC
Confidence 5565432 22 2222 122223345798875 23444443444 4666666655321 11 1122
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecC-------C--eEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecC
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQD-------G--TVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D-------~--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~ 278 (302)
. . ...|+||+ +.|+-.+.. + .|.+.|+.... . +.+... ......+|||||+.|+....
T Consensus 321 ~--~--~~~~SPDG----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~--~~LT~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 321 K--N--NSSVSTYK----NYIVYSSRETNNEFGKNTFNLYLISTNSDY--I--RRLTAN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred C--c--CceECCCC----CEEEEEEcCCCcccCCCCcEEEEEECCCCC--e--EECCCC-CCcCCeEECCCCCEEEEEEc
Confidence 2 1 24899996 555555443 2 45555654432 1 122221 12235789999998877754
Q ss_pred C--ceEEeeecCCce
Q 022111 279 N--NVTLWKEAVDGE 291 (302)
Q Consensus 279 d--~i~~w~~~~~~~ 291 (302)
. .-.|+-+..+|.
T Consensus 388 ~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 388 LGNQSALGIIRLNYN 402 (419)
T ss_pred cCCcEEEEEEecCCC
Confidence 3 455666655664
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.29 E-value=2.7e-05 Score=73.39 Aligned_cols=185 Identities=13% Similarity=0.148 Sum_probs=118.6
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK 102 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 102 (302)
+..+.-|+.-..+..+|+........... -...|.-++.+ ++.++.|...|+|.+-|.++. ..++++..|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v--~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~---~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV--SASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSF---ETIHTFDAHS 217 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec--cCCceEEEEec----CcEEEeecccceEEeecCCcC---ceeeeeeccc
Confidence 34555566556666677654322122222 12247778763 688999999999999998664 4788999999
Q ss_pred CCeeEEEecCCCCCcEEEEEec---------CCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCC
Q 022111 103 SSVNSIAWAPHELGLSLACGSS---------DGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLD 173 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l~sg~~---------d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 173 (302)
+.|.+++.. |..|++|+. |.-|++||++......+..+. .. -.-+.|.|.-
T Consensus 218 ~siSDfDv~----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~-P~flrf~Psl------------ 277 (1118)
T KOG1275|consen 218 GSISDFDVQ----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YG-PQFLRFHPSL------------ 277 (1118)
T ss_pred cceeeeecc----CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cC-chhhhhcccc------------
Confidence 999999875 557888874 556788998754332222211 11 1223344432
Q ss_pred CceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 174 PVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 174 ~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
..+++.++..|...+-|..+-........-+..-...+..+++++++ +.+|-|..+|.|.+|-
T Consensus 278 -~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~----~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 278 -TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG----DALAFGDHEGHVNLWA 340 (1118)
T ss_pred -cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC----ceEEEecccCcEeeec
Confidence 25788888889999988332111111111122234558899999985 7899999999999997
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=0.00015 Score=66.87 Aligned_cols=252 Identities=16% Similarity=0.234 Sum_probs=147.1
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 4 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
.|++.||...|.-+.|+.+.+.|-+...+|.|.+|-+-.+..- -..+. ..+.-|.+++|.. +|..++.+-+||.|.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~-EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC-EEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVI 140 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHH-HHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEE
Confidence 4678899999999999999999999999999999988554321 11111 2345578999975 489999999999998
Q ss_pred EEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCe----e----eeeecccCCCCeEE
Q 022111 83 IWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGW----D----TTRIDQAHPVGVTS 154 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~----~----~~~~~~~h~~~v~~ 154 (302)
+=.+..+.-|. +.+++. ....+.|++|. ..+..+-..|.+.+||....-.. + ..-.....+..+..
T Consensus 141 VGsvdGNRIwg--KeLkg~--~l~hv~ws~D~--~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 141 VGSVDGNRIWG--KELKGQ--LLAHVLWSEDL--EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred EEeeccceecc--hhcchh--eccceeecccH--HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 86664432121 122221 12467899983 45566666789999986421000 0 00000011223455
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
+.|...... ..-++--.|+.|-..|.+.|-.-.+.. .+.+..-.-.|....|+|+| ..||.++.|
T Consensus 215 i~w~~g~~~------~v~pdrP~lavcy~nGr~QiMR~eND~-----~Pvv~dtgm~~vgakWnh~G----~vLAvcG~~ 279 (1189)
T KOG2041|consen 215 IEWNTGPYQ------PVPPDRPRLAVCYANGRMQIMRSENDP-----EPVVVDTGMKIVGAKWNHNG----AVLAVCGND 279 (1189)
T ss_pred eeeccCccc------cCCCCCCEEEEEEcCceehhhhhcCCC-----CCeEEecccEeecceecCCC----cEEEEccCc
Confidence 666432110 011223478888888888775432211 11111112447889999996 778888776
Q ss_pred Ce---------EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111 235 GT---------VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL 283 (302)
Q Consensus 235 ~~---------i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~ 283 (302)
.. |.++..-. . ....++-....|.+++|--.|-.+|.|-+..|.+
T Consensus 280 ~da~~~~d~n~v~Fysp~G---~-i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyf 333 (1189)
T KOG2041|consen 280 SDADEPTDSNKVHFYSPYG---H-IVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYF 333 (1189)
T ss_pred ccccCccccceEEEeccch---h-heEEEecCCceeeeeEEcCCceEEEEEecceEEE
Confidence 42 22221100 0 0111223345688999988887777774434444
No 298
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.00072 Score=60.75 Aligned_cols=216 Identities=15% Similarity=0.294 Sum_probs=125.8
Q ss_pred cccceeEEEEccCC--CEEE-----EeeCCCcEEEEeecCCC-ceE--EEEecCcccCeEEEEeeCCCCCC-E--EEEEe
Q 022111 10 HEDTVHDVAMDFYG--KRLA-----TASSDSSIKIIGLSNSA-SQH--LATLKGHRGPVWQVAWAHPKFGS-I--LASCS 76 (302)
Q Consensus 10 h~~~v~~~~~s~~~--~~l~-----s~~~d~~v~lw~~~~~~-~~~--~~~~~~h~~~v~~v~~~~~~~~~-~--l~s~s 76 (302)
|...|+.+.+||-+ .++| +.|.=..||||...... .+. .++|- -.+.| .+.|++- |+ + |++..
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkv-qm~WN~~--gt~LLvLastd 239 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKV-QMKWNKL--GTALLVLASTD 239 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-cccee-EEEeccC--CceEEEEEEEe
Confidence 55678888888863 3444 34556679999875211 111 12221 11223 4667542 33 2 33333
Q ss_pred CCC---------eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeeccc
Q 022111 77 YDG---------QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA 147 (302)
Q Consensus 77 ~D~---------~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~ 147 (302)
-|+ ++.+.++... ...-.+. -+++|-++.|+|+...--++.|-+--.+.+||++.. ....+.
T Consensus 240 VDktn~SYYGEq~Lyll~t~g~---s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~-- 310 (566)
T KOG2315|consen 240 VDKTNASYYGEQTLYLLATQGE---SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFP-- 310 (566)
T ss_pred ecCCCccccccceEEEEEecCc---eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCC--
Confidence 344 5666655421 1222222 479999999999843234566677788999988632 122322
Q ss_pred CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC---CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCC
Q 022111 148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD---NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLP 224 (302)
Q Consensus 148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D---~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 224 (302)
+.+=+++-|+|.+ ..|+-+|.+ |.+-|||+.+. +++..+..-. -+-+.|+|||
T Consensus 311 -egpRN~~~fnp~g--------------~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a~~--tt~~eW~PdG--- 366 (566)
T KOG2315|consen 311 -EGPRNTAFFNPHG--------------NIILLAGFGNLPGDMEVWDVPNR----KLIAKFKAAN--TTVFEWSPDG--- 366 (566)
T ss_pred -CCCccceEECCCC--------------CEEEEeecCCCCCceEEEeccch----hhccccccCC--ceEEEEcCCC---
Confidence 3445678899874 566666554 57999999863 3344443222 2446899996
Q ss_pred ccEEEEEec------CCeEEEEEeccCCcceeeeeeccCCCcEEEEEEcc
Q 022111 225 KSTIASASQ------DGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSL 268 (302)
Q Consensus 225 ~~~l~s~s~------D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~sp 268 (302)
.+|+|++. |..++||+..... .....++...+.+.|-|
T Consensus 367 -e~flTATTaPRlrvdNg~KiwhytG~~-----l~~~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 367 -EYFLTATTAPRLRVDNGIKIWHYTGSL-----LHEKMFKSELLQVEWRP 410 (566)
T ss_pred -cEEEEEeccccEEecCCeEEEEecCce-----eehhhhhHhHhheeeee
Confidence 66777753 6789999975320 11134444688888876
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.19 E-value=0.0018 Score=57.28 Aligned_cols=217 Identities=18% Similarity=0.238 Sum_probs=128.0
Q ss_pred EccCCCEEEEeeCCCcEEEEeecCCCceEEEE---ec-CcccC--eE---EEE-eeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 19 MDFYGKRLATASSDSSIKIIGLSNSASQHLAT---LK-GHRGP--VW---QVA-WAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 19 ~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~---~~-~h~~~--v~---~v~-~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
.+.||+.++ -+..|.|.+||.++...+.+.. +. ..+.+ +. -+. |+. .+|++++..|. |++-|.+...
T Consensus 274 ~nsDGkrIv-Fq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSR-GkaFi~~~~~ 350 (668)
T COG4946 274 ANSDGKRIV-FQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSR-GKAFIMRPWD 350 (668)
T ss_pred cCCCCcEEE-EecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEec-CcEEEECCCC
Confidence 355787775 4567889999976544332210 00 01111 11 111 222 34889999887 4555654433
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCcee
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALV 167 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 167 (302)
+- .+ ++ +|.+.|+...+.-+. .-++.|..|+ .+-+|+..... ...+. ..-..|.++..+|+
T Consensus 351 ~~---~i-qv-~~~~~VrY~r~~~~~--e~~vigt~dgD~l~iyd~~~~e---~kr~e-~~lg~I~av~vs~d------- 412 (668)
T COG4946 351 GY---SI-QV-GKKGGVRYRRIQVDP--EGDVIGTNDGDKLGIYDKDGGE---VKRIE-KDLGNIEAVKVSPD------- 412 (668)
T ss_pred Ce---eE-Ec-CCCCceEEEEEccCC--cceEEeccCCceEEEEecCCce---EEEee-CCccceEEEEEcCC-------
Confidence 21 11 22 477789988888763 3688888888 89999876431 12222 33455777777665
Q ss_pred ecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC----eEEEEEec
Q 022111 168 GLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG----TVVIWTCA 243 (302)
Q Consensus 168 ~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~----~i~iwd~~ 243 (302)
|+.++.+-....+-+.|+.++.-++ +. ....+-|..++|||+. ..||-+=.+| .|+++|+.
T Consensus 413 -------GK~~vvaNdr~el~vididngnv~~--id--kS~~~lItdf~~~~ns----r~iAYafP~gy~tq~Iklydm~ 477 (668)
T COG4946 413 -------GKKVVVANDRFELWVIDIDNGNVRL--ID--KSEYGLITDFDWHPNS----RWIAYAFPEGYYTQSIKLYDMD 477 (668)
T ss_pred -------CcEEEEEcCceEEEEEEecCCCeeE--ec--ccccceeEEEEEcCCc----eeEEEecCcceeeeeEEEEecC
Confidence 4777777777778888888774221 11 1235679999999995 7788776665 68999987
Q ss_pred cCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111 244 KEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV 275 (302)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 275 (302)
..+- . .. ......=.+=+|.|||++|-.
T Consensus 478 ~~Ki-y--~v-TT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 478 GGKI-Y--DV-TTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred CCeE-E--Ee-cCCcccccCcccCCCCcEEEE
Confidence 5321 1 11 111111234578888887743
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.18 E-value=7.1e-05 Score=70.67 Aligned_cols=194 Identities=20% Similarity=0.288 Sum_probs=120.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH 148 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h 148 (302)
+..++-|+--..+...|+++.. .......-...|.-++.+ ++.+.+|...|+|.+-|..+-. ....+. +|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~---e~r~~~v~a~~v~imR~N----nr~lf~G~t~G~V~LrD~~s~~--~iht~~-aH 216 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK---ETRTTNVSASGVTIMRYN----NRNLFCGDTRGTVFLRDPNSFE--TIHTFD-AH 216 (1118)
T ss_pred Ccceeecchhhheeeeecccce---eeeeeeccCCceEEEEec----CcEEEeecccceEEeecCCcCc--eeeeee-cc
Confidence 3455566655666667776543 222222122235555543 5689999999999998765422 223444 77
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC---------CCcEEEEEEecCccccccccccccCCCceeEEEeeC
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC---------DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP 219 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~---------D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p 219 (302)
...+..+... |..|+|||. |..|+|||++.- ..+..+..+.++ .=+.|+|
T Consensus 217 s~siSDfDv~----------------GNlLitCG~S~R~~~l~~D~FvkVYDLRmm----ral~PI~~~~~P-~flrf~P 275 (1118)
T KOG1275|consen 217 SGSISDFDVQ----------------GNLLITCGYSMRRYNLAMDPFVKVYDLRMM----RALSPIQFPYGP-QFLRFHP 275 (1118)
T ss_pred ccceeeeecc----------------CCeEEEeecccccccccccchhhhhhhhhh----hccCCcccccCc-hhhhhcc
Confidence 7777655321 456777764 667899998752 222223334433 3367888
Q ss_pred CCCCCccEEEEEecCCeEEEEEeccCCcceeee-eeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111 220 NLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR-VLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS 296 (302)
Q Consensus 220 ~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~~~~~~ 296 (302)
.. ...++..|.-|.+.+-|......+.... ........+.++.+|++|+.+|.+..+ .|.+|....+++..+.+
T Consensus 276 sl---~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s 351 (1118)
T KOG1275|consen 276 SL---TTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYS 351 (1118)
T ss_pred cc---cceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCCc
Confidence 75 4789999999999998843321121111 112233458999999999999999888 69999866566554443
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.00036 Score=60.28 Aligned_cols=81 Identities=20% Similarity=0.368 Sum_probs=66.3
Q ss_pred ccccccccceeEEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 5 KIETGHEDTVHDVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 5 ~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
++..+|...|.+++|||..+ .|..++.+.+|+|.|+.+. -.+.++..| ..+++++|.-+ +.++|..|-..|.|.+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDld-e~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLD-ERHVIYAGLQNGMVLV 262 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccC-CcceeEEeccCceEEE
Confidence 34557788899999999887 7888999999999999753 345566667 68999999765 4678999999999999
Q ss_pred EEcCCC
Q 022111 84 WKEGNQ 89 (302)
Q Consensus 84 wd~~~~ 89 (302)
||++..
T Consensus 263 yD~R~~ 268 (463)
T KOG1645|consen 263 YDMRQP 268 (463)
T ss_pred EEccCC
Confidence 999754
No 302
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=8.8e-06 Score=68.65 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=85.9
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCC---CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS---ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~---~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
.+..|.++.|...+..+..|+..|.|..+|+... ...+...+ -|...|+++..-- .++.+|.+.+.+|+|++||.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq-~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQ-FSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhc-cccceEeeccCcCceeEeee
Confidence 3456666777776789999999999999998532 22333334 3888898876432 23567888899999999998
Q ss_pred CCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111 87 GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD 136 (302)
Q Consensus 87 ~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~ 136 (302)
+--+....+.++.+|-..-..+-++-++..-.++++++|-..++|.+..+
T Consensus 329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 75433334777888854444444432322336777999999999988643
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0023 Score=57.94 Aligned_cols=180 Identities=8% Similarity=0.011 Sum_probs=93.0
Q ss_pred ceeEEEEccCCCE-EEEeeCC---CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE-EEEEeCCC--eEEEEE
Q 022111 13 TVHDVAMDFYGKR-LATASSD---SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI-LASCSYDG--QVIIWK 85 (302)
Q Consensus 13 ~v~~~~~s~~~~~-l~s~~~d---~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~D~--~i~iwd 85 (302)
....-.|+|||+. ++-.+.+ ..|.++|+.++..+.+.. ..+.+....|+|+ |+. +++.+.++ .|-++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKD--GSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCC--CCEEEEEEccCCCcEEEEEE
Confidence 5567889999984 5544433 457777776544333332 3444556789874 654 44555454 455556
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEe-cCC--cEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCC
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGS-SDG--NISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~-~d~--~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
+.++. ...+..+........|+|| |..|+..+ ..+ .|.++++..+ ... .+... .. ....|+|++
T Consensus 264 l~~g~----~~~LT~~~~~d~~p~~SPD--G~~I~F~Sdr~g~~~Iy~~dl~~g-~~~--rlt~~-g~--~~~~~SPDG- 330 (419)
T PRK04043 264 TNTKT----LTQITNYPGIDVNGNFVED--DKRIVFVSDRLGYPNIFMKKLNSG-SVE--QVVFH-GK--NNSSVSTYK- 330 (419)
T ss_pred CCCCc----EEEcccCCCccCccEECCC--CCEEEEEECCCCCceEEEEECCCC-CeE--eCccC-CC--cCceECCCC-
Confidence 65442 2233333333345579998 55555544 334 4555555432 221 11111 11 123788875
Q ss_pred CCceeecccCCCceeEEEeeCC---------CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 163 PGALVGLGLLDPVQKLASCGCD---------NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D---------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
+.|+-.+.. ..|.+.|+.++.. . .+... .......|+||+ +.|+-.+.
T Consensus 331 -------------~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~--~---~LT~~-~~~~~p~~SPDG----~~I~f~~~ 387 (419)
T PRK04043 331 -------------NYIVYSSRETNNEFGKNTFNLYLISTNSDYI--R---RLTAN-GVNQFPRFSSDG----GSIMFIKY 387 (419)
T ss_pred -------------CEEEEEEcCCCcccCCCCcEEEEEECCCCCe--E---ECCCC-CCcCCeEECCCC----CEEEEEEc
Confidence 444433332 2577777766532 1 12211 123358899996 44544443
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.00046 Score=65.04 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=121.4
Q ss_pred EEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCe-----EEEEEcCCC--
Q 022111 18 AMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQ-----VIIWKEGNQ-- 89 (302)
Q Consensus 18 ~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~-----i~iwd~~~~-- 89 (302)
++++.+..+|.|+.+|.|.+++-+ .+.+..+++++.. |..+-.. + .-..|++.++|.+ ++||+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~-~-~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS---FQLIRGFQAYEQSIVQFLYIL-N-KQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc---ceeeehheecchhhhhHhhcc-c-CceEEEEEeecCCCCceEEEEecccccCC
Confidence 457788899999999988887643 2344567777766 4444322 2 1357888887765 899998532
Q ss_pred Cc-eeEE--EEecC-----CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCC
Q 022111 90 ND-WTQA--HTFND-----HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 90 ~~-~~~~--~~~~~-----h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
+. ..+. +.... ...++.+++.+.+ -+.+|+|-.+|.|..+...- +.... .........+|+.+.+..
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~--l~~Iv~Gf~nG~V~~~~GDi~RDrgsr-~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSED--LKTIVCGFTNGLVICYKGDILRDRGSR-QDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEcc--ccEEEEEecCcEEEEEcCcchhccccc-eeeeccCCCCceeeEEec
Confidence 11 1222 11112 2457888999876 45899999999999985431 11111 111112345788887754
Q ss_pred CCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 160 AMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
++ ...+..+ +...|.+|.+.... .....+..|....+|.++++.. +.+++++++ .+.+
T Consensus 182 d~-------------~s~lFv~-Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t---~qfIca~~e--~l~f 239 (933)
T KOG2114|consen 182 DG-------------KSVLFVA-TTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGT---YQFICAGSE--FLYF 239 (933)
T ss_pred CC-------------ceeEEEE-ecceeEEEEecCCC---cceeeeccCCccceeeecCCCC---ccEEEecCc--eEEE
Confidence 32 1213333 34569999987431 1234467788889999998753 235555543 4788
Q ss_pred EEeccCC
Q 022111 240 WTCAKEG 246 (302)
Q Consensus 240 wd~~~~~ 246 (302)
|+....+
T Consensus 240 Y~sd~~~ 246 (933)
T KOG2114|consen 240 YDSDGRG 246 (933)
T ss_pred EcCCCcc
Confidence 8876543
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.00042 Score=64.80 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=80.1
Q ss_pred ccccccceeEEEEccC-------------CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCC---CCCC
Q 022111 7 ETGHEDTVHDVAMDFY-------------GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHP---KFGS 70 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~-------------~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---~~~~ 70 (302)
+..|++.|.-..+..+ |++++||+.||+|.|-.+-+........+ ..++.+|++.|+ +..+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk 130 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSK 130 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec---CCcceeEEeccchhhhhhh
Confidence 3357777776655554 89999999999999988754332222233 457888998765 2356
Q ss_pred EEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111 71 ILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD 136 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~ 136 (302)
.+++|+.-| +.++.-+--+.+..+ .+..-.++|.++.|. |.++|=++++ -|++||....
T Consensus 131 ~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~----g~lIAWand~-Gv~vyd~~~~ 189 (846)
T KOG2066|consen 131 QFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR----GNLIAWANDD-GVKVYDTPTR 189 (846)
T ss_pred heeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec----CcEEEEecCC-CcEEEecccc
Confidence 899999888 777642211111122 344467999999996 5577777655 5789998654
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00047 Score=59.62 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=66.4
Q ss_pred EEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc
Q 022111 48 LATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN 127 (302)
Q Consensus 48 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~ 127 (302)
..-+.+|...|..++|+|.+. -++..++-+.+|+|.|+++. ..+.++..| ..+.+++|.-|+ ...+.+|...|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~-GLl~~asl~nkiki~dlet~---~~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNE-GLLGLASLGNKIKIMDLETS---CVVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCcccc-ceeeeeccCceEEEEecccc---eeeeheecc-CCceeeeeccCC-cceeEEeccCce
Confidence 334567888899999987543 37788999999999999876 356667666 789999998875 457999999999
Q ss_pred EEEEEecCC
Q 022111 128 ISVFTATAD 136 (302)
Q Consensus 128 v~~~~~~~~ 136 (302)
|.+||++..
T Consensus 260 VlvyD~R~~ 268 (463)
T KOG1645|consen 260 VLVYDMRQP 268 (463)
T ss_pred EEEEEccCC
Confidence 999999854
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00047 Score=62.50 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=73.3
Q ss_pred EEEEeeCCCCCCEEEEE----eCCCeE----EEEEcCCCCceeEE--EEecCCCCCeeEEEecCCCCCcEEEEEecCCcE
Q 022111 59 WQVAWAHPKFGSILASC----SYDGQV----IIWKEGNQNDWTQA--HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNI 128 (302)
Q Consensus 59 ~~v~~~~~~~~~~l~s~----s~D~~i----~iwd~~~~~~~~~~--~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v 128 (302)
.++.|+.. .+..+.|. +.++.+ .+|+....+ ...+ ..+ .....|.+++++|++ ..++.|..||.|
T Consensus 209 l~~~Fs~~-~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsi-pL~s~v~~ca~sp~E--~kLvlGC~DgSi 283 (545)
T PF11768_consen 209 LDVEFSLN-QPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSI-PLPSQVICCARSPSE--DKLVLGCEDGSI 283 (545)
T ss_pred EEEEccCC-CCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEE-ecCCcceEEecCccc--ceEEEEecCCeE
Confidence 45667643 34555544 233433 345553322 1222 223 267789999999985 489999999999
Q ss_pred EEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec
Q 022111 129 SVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~ 194 (302)
.+||..... .... ......+.++|+|++ ..+++|+.-|.+.+||+.-
T Consensus 284 iLyD~~~~~----t~~~-ka~~~P~~iaWHp~g--------------ai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 284 ILYDTTRGV----TLLA-KAEFIPTLIAWHPDG--------------AIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcCCCe----eeee-eecccceEEEEcCCC--------------cEEEEEcCCceEEEEEeec
Confidence 999976432 1111 223456889999974 7899999999999999753
No 308
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=6.2e-06 Score=74.82 Aligned_cols=208 Identities=16% Similarity=0.214 Sum_probs=122.8
Q ss_pred ceeEEEEccCC--CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe----CCCeEEEEEc
Q 022111 13 TVHDVAMDFYG--KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS----YDGQVIIWKE 86 (302)
Q Consensus 13 ~v~~~~~s~~~--~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s----~D~~i~iwd~ 86 (302)
.+.+++...+. -.++.|..+|.|-+-.+..+....-....+|...+++++|++ .+.++||.|- .|..+.|||+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne-LDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE-LDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc-ccHHHHHhhhhhhcccCCccceec
Confidence 44555544333 478889999999998774433222234567888999999975 3567788773 4778999999
Q ss_pred CCC--CceeEEEEecC-CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCC
Q 022111 87 GNQ--NDWTQAHTFND-HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 87 ~~~--~~~~~~~~~~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 163 (302)
.+. .+... ..|.. ...-..+++|-.+ .+++.+|...+.+.++|++.... ....+ .+..+..+...|..
T Consensus 137 ~s~ltvPke~-~~fs~~~l~gqns~cwlrd--~klvlaGm~sr~~~ifdlRqs~~-~~~sv---nTk~vqG~tVdp~~-- 207 (783)
T KOG1008|consen 137 NSLLTVPKES-PLFSSSTLDGQNSVCWLRD--TKLVLAGMTSRSVHIFDLRQSLD-SVSSV---NTKYVQGITVDPFS-- 207 (783)
T ss_pred ccccCCCccc-cccccccccCccccccccC--cchhhcccccchhhhhhhhhhhh-hhhhh---hhhhcccceecCCC--
Confidence 765 11111 11211 3334457777655 45788888888999999873211 00111 11123333334421
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEE-EecCcccccc-ccccccCCCceeEEEeeCCCCCCccEEEEEec-CCeEEEE
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWK-MYNGIWKMDC-FPALQMHSDWVRSVAWAPNLGLPKSTIASASQ-DGTVVIW 240 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd-~~~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~-D~~i~iw 240 (302)
..++++-. |+.|-+|| .++-...+.. ++.-......+..++|+|.. ..++++.+. .++|+.+
T Consensus 208 -----------~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr---tglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 208 -----------PNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR---TGLLAVLSRDSITIRLY 272 (783)
T ss_pred -----------CCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC---cchhhhhccCcceEEEe
Confidence 24555555 89999999 4332111111 11111122348899999974 356666665 4589999
Q ss_pred EeccC
Q 022111 241 TCAKE 245 (302)
Q Consensus 241 d~~~~ 245 (302)
|+...
T Consensus 273 di~~v 277 (783)
T KOG1008|consen 273 DICVV 277 (783)
T ss_pred ccccc
Confidence 98753
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.87 E-value=0.004 Score=61.04 Aligned_cols=236 Identities=14% Similarity=0.211 Sum_probs=128.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCc
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND 91 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 91 (302)
+.|.++.|..+...++.+..+|.|.+-|.++...+.+.. -...|.+++|+++ ...++-...++++.+-.- .
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~D--ee~l~liT~~~tll~mT~----~ 139 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPD--EELLALITGRQTLLFMTK----D 139 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCC--CcEEEEEeCCcEEEEEec----c
Confidence 688889998888888888899999998876544444333 3567999999875 678888888888777531 1
Q ss_pred eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC--eee---eee-c--ccCCCCeEEEEeCCCCCC
Q 022111 92 WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG--WDT---TRI-D--QAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 92 ~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~--~~~---~~~-~--~~h~~~v~~~~~~~~~~~ 163 (302)
+.++.....+ ..-.+ -...+.+++.+.=.-+....+.. .+. ... . ..+. .=+++.|--+
T Consensus 140 f~~i~E~~L~------~d~~~---~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgD--- 206 (1265)
T KOG1920|consen 140 FEPIAEKPLD------ADDER---KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWRGD--- 206 (1265)
T ss_pred ccchhccccc------ccccc---ccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEccC---
Confidence 1111110000 00001 11234444433222221111100 000 000 0 0111 1245777543
Q ss_pred CceeecccCCCceeEEEe----eCC-CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe---cCC
Q 022111 164 GALVGLGLLDPVQKLASC----GCD-NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS---QDG 235 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~----~~D-~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s---~D~ 235 (302)
|+++|+. ..+ +.|+|||-. +...-.. ....+.-.+++|-|.| ..+++.- .|.
T Consensus 207 -----------g~~fAVs~~~~~~~~RkirV~drE-g~Lns~s----e~~~~l~~~LsWkPsg----s~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 207 -----------GEYFAVSFVESETGTRKIRVYDRE-GALNSTS----EPVEGLQHSLSWKPSG----SLIAAIQCKTSDS 266 (1265)
T ss_pred -----------CcEEEEEEEeccCCceeEEEeccc-chhhccc----CcccccccceeecCCC----CeEeeeeecCCCC
Confidence 4555552 234 899999976 3211110 1112233589999975 6677763 455
Q ss_pred eEEEEEeccCCcceeeeeecc---CCCcEEEEEEccCCCEEEE---ecCC-ceEEeeecCCceEE
Q 022111 236 TVVIWTCAKEGEQWEGRVLKD---FKTPVWSVSWSLTGNLLAV---ADAN-NVTLWKEAVDGEWQ 293 (302)
Q Consensus 236 ~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~la~---~~~d-~i~~w~~~~~~~~~ 293 (302)
.|.+|..... ..+.+... ...++..++|+.++.+||+ ...+ .|++|-.. +=.|=
T Consensus 267 ~IvffErNGL---~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~-NyhWY 327 (1265)
T KOG1920|consen 267 DIVFFERNGL---RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTG-NYHWY 327 (1265)
T ss_pred cEEEEecCCc---cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEec-CeEEE
Confidence 7888864432 11222111 1234889999999999998 4444 49999753 33343
No 310
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.83 E-value=1.4e-05 Score=72.52 Aligned_cols=208 Identities=17% Similarity=0.240 Sum_probs=123.0
Q ss_pred cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE----ecCCcEEEE
Q 022111 56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG----SSDGNISVF 131 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg----~~d~~v~~~ 131 (302)
..+.++++....+-.+++.|..+|.|-+-..+..- ........+|..+-++++|++-+ ...||+| ..|..+.||
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-dSs~E~tp~~ar~Ct~lAwneLD-tn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-DSSAEVTPGYARPCTSLAWNELD-TNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcc-cccceeccccccccccccccccc-HHHHHhhhhhhcccCCccce
Confidence 45667776554333578999999999998764321 11233455677888999998753 3467766 345688999
Q ss_pred EecCCC--CeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC
Q 022111 132 TATADG--GWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS 209 (302)
Q Consensus 132 ~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~ 209 (302)
|+...- +.....+..+......+++|-.+ .+++.+|...+.+.++|++...-....+ -+
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd--------------~klvlaGm~sr~~~ifdlRqs~~~~~sv-----nT 195 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRD--------------TKLVLAGMTSRSVHIFDLRQSLDSVSSV-----NT 195 (783)
T ss_pred ecccccCCCccccccccccccCccccccccC--------------cchhhcccccchhhhhhhhhhhhhhhhh-----hh
Confidence 987531 11111121112334556777643 3788899999999999998431110111 12
Q ss_pred CceeEEEeeCCCCCCccEEEEEecCCeEEEEEe-ccCCcceeeeeec--cCCCcEEEEEEccCC-CEEEEecCC--ceEE
Q 022111 210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC-AKEGEQWEGRVLK--DFKTPVWSVSWSLTG-NLLAVADAN--NVTL 283 (302)
Q Consensus 210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~-~~~~~~~~~~~~~--~~~~~v~~~~~spdg-~~la~~~~d--~i~~ 283 (302)
..+..+...|= .++++++.. |+.|-+||. +.-..+.+..+.. .....+..++|.|.. -.+++-.+| .|++
T Consensus 196 k~vqG~tVdp~---~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 196 KYVQGITVDPF---SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred hhcccceecCC---CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 23445555662 136787776 999999993 3211111101111 112358899999954 355666677 4888
Q ss_pred eeecC
Q 022111 284 WKEAV 288 (302)
Q Consensus 284 w~~~~ 288 (302)
+++.+
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 88744
No 311
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=0.00089 Score=62.55 Aligned_cols=165 Identities=21% Similarity=0.343 Sum_probs=105.7
Q ss_pred CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeC
Q 022111 104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGC 183 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 183 (302)
.-.+++|+|. | ++|.|+. ..|.+-|..+-... ..+ ..|...|+.+.|.|...+..+.+-.. -.-+||++-.
T Consensus 17 N~~A~Dw~~~--G-LiAygsh-slV~VVDs~s~q~i--qsi-e~h~s~V~~VrWap~~~p~~llS~~~--~~lliAsaD~ 87 (1062)
T KOG1912|consen 17 NRNAADWSPS--G-LIAYGSH-SLVSVVDSRSLQLI--QSI-ELHQSAVTSVRWAPAPSPRDLLSPSS--SQLLIASADI 87 (1062)
T ss_pred cccccccCcc--c-eEEEecC-ceEEEEehhhhhhh--hcc-ccCccceeEEEeccCCCchhccCccc--cceeEEeccc
Confidence 3678899985 4 5777654 46667776542211 223 36788899999999765544432110 1246788888
Q ss_pred CCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEE-
Q 022111 184 DNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVW- 262 (302)
Q Consensus 184 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~- 262 (302)
.|.|.+||...+. .+..+..|.++|.+++|-|...-+...|++...-.+|.+|+..+....|. .++...+.
T Consensus 88 ~GrIil~d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk----~~ys~~iLs 159 (1062)
T KOG1912|consen 88 SGRIILVDFVLAS----VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK----YDYSHEILS 159 (1062)
T ss_pred cCcEEEEEehhhh----hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec----cccCCccee
Confidence 8999999987652 33456778899999999885433346788888899999999887655553 23333343
Q ss_pred EEEEcc-CCCEE-EEecCCceEEee
Q 022111 263 SVSWSL-TGNLL-AVADANNVTLWK 285 (302)
Q Consensus 263 ~~~~sp-dg~~l-a~~~~d~i~~w~ 285 (302)
++.+.| |-+.+ +.++.+.+.+-+
T Consensus 160 ~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 160 CFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred eeeeCCCCcceEEEEccCceEEEEe
Confidence 367766 44444 333333444444
No 312
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.78 E-value=0.0063 Score=57.16 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=140.6
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCC----------CCCEEEEEeCCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPK----------FGSILASCSYDG 79 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~----------~~~~l~s~s~D~ 79 (302)
|...-.++.|+|.| .+|=|+ ...|.+-|.-. .+.+.++.-|+..|+.++|.|-. .--+||++...|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s--~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRS--LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhh--hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 34445567889877 555454 44567766533 45677888899999999997521 112678888899
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC--CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEe
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL--GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSW 157 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~--~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 157 (302)
.|.+||..... ....+..|++++..+.|-|.++ -..|+.-....++.+|+..++.. ......+| ....++.+
T Consensus 90 rIil~d~~~~s---~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k--~Wk~~ys~-~iLs~f~~ 163 (1062)
T KOG1912|consen 90 RIILVDFVLAS---VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK--FWKYDYSH-EILSCFRV 163 (1062)
T ss_pred cEEEEEehhhh---hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce--eeccccCC-cceeeeee
Confidence 99999986542 3345777899999999965432 24677777788999997665432 22222233 23455777
Q ss_pred CCCCCCCceeecccCCCceeEEEe------eCCCcEEEEEEecCccccccc--ccc--ccCC------Cce---eEEEee
Q 022111 158 APAMAPGALVGLGLLDPVQKLASC------GCDNTVKVWKMYNGIWKMDCF--PAL--QMHS------DWV---RSVAWA 218 (302)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~s~------~~D~~v~iwd~~~~~~~~~~~--~~~--~~h~------~~v---~~v~~~ 218 (302)
.|.....-++. .-+.+++++ -.|...+.+.+.+........ .+- ..+. ..| ..++|+
T Consensus 164 DPfd~rh~~~l----~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 164 DPFDSRHFCVL----GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS 239 (1062)
T ss_pred CCCCcceEEEE----ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence 77532111100 000111111 112223333332210000000 000 0011 011 235667
Q ss_pred CCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCC--CEEEEecCC-ceEEeeec
Q 022111 219 PNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTG--NLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 219 p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~la~~~~d-~i~~w~~~ 287 (302)
|.- +.++-....+.+.|+|++-+.. ...+.- ..+.+.-+.+-|++ +.|-+...| .+.||...
T Consensus 240 p~~----rn~lfi~~prellv~dle~~~~--l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 240 PHW----RNILFITFPRELLVFDLEYECC--LAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred hhh----hceEEEEeccceEEEcchhhce--eEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 753 4455566788899999875421 111111 12233345666765 566777777 58888764
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.74 E-value=0.014 Score=57.39 Aligned_cols=201 Identities=14% Similarity=0.263 Sum_probs=109.1
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeec-----CCCc----------------eEEEEecC---------------
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLS-----NSAS----------------QHLATLKG--------------- 53 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~-----~~~~----------------~~~~~~~~--------------- 53 (302)
-...|.+++||||++.++-.....++.+-... ..+. +.-.+|.|
T Consensus 108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek 187 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK 187 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence 35678899999999999888877777664321 0000 00112221
Q ss_pred -------cccCeEEEEeeCCCCCCEEEEE----eCC-CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEE
Q 022111 54 -------HRGPVWQVAWAHPKFGSILASC----SYD-GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLAC 121 (302)
Q Consensus 54 -------h~~~v~~v~~~~~~~~~~l~s~----s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~s 121 (302)
|++. ..|+|.- +|.++|.. ..+ +.+++||-+.. .-.+-....+.-.+++|-|. |..+|+
T Consensus 188 ~~~~~~~~~~~-~~IsWRg--Dg~~fAVs~~~~~~~~RkirV~drEg~----Lns~se~~~~l~~~LsWkPs--gs~iA~ 258 (1265)
T KOG1920|consen 188 ALEQIEQDDHK-TSISWRG--DGEYFAVSFVESETGTRKIRVYDREGA----LNSTSEPVEGLQHSLSWKPS--GSLIAA 258 (1265)
T ss_pred cccchhhccCC-ceEEEcc--CCcEEEEEEEeccCCceeEEEecccch----hhcccCcccccccceeecCC--CCeEee
Confidence 1111 2488853 48888762 224 89999986521 10111112233468899995 666665
Q ss_pred E---ecCCcEEEEEecC--CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE---eeCCCcEEEEEEe
Q 022111 122 G---SSDGNISVFTATA--DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS---CGCDNTVKVWKMY 193 (302)
Q Consensus 122 g---~~d~~v~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~~~D~~v~iwd~~ 193 (302)
- ..|+.|.+|.-+. .+.+.+. .. .....+..++|+.+. ..||. +.....|++|-..
T Consensus 259 iq~~~sd~~IvffErNGL~hg~f~l~-~p-~de~~ve~L~Wns~s--------------diLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 259 IQCKTSDSDIVFFERNGLRHGEFVLP-FP-LDEKEVEELAWNSNS--------------DILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred eeecCCCCcEEEEecCCccccccccC-Cc-ccccchheeeecCCC--------------CceeeeecccccceEEEEEec
Confidence 4 3455788885431 1111110 10 112238899998753 55555 4555569999987
Q ss_pred cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 194 NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 194 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
+-.|-+++...+.+- .. +.|+|-. ...+..-.++|..-+++.
T Consensus 323 NyhWYLKq~l~~~~~--~~--~~W~p~~---~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 323 NYHWYLKQELQFSQK--AL--LMWDPVT---EKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CeEEEEEEEEecccc--cc--ccccCCC---ceeEEEEecCCcEEEEEE
Confidence 766655443322211 11 7788853 233333335555555443
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.71 E-value=0.021 Score=47.72 Aligned_cols=226 Identities=13% Similarity=0.105 Sum_probs=124.0
Q ss_pred EEEEcc-CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeE
Q 022111 16 DVAMDF-YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQ 94 (302)
Q Consensus 16 ~~~~s~-~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 94 (302)
+.+|.+ ++.++.+--..+.|..|+...... ....+.+ ...+.+..+ ++. |+.+..++ +.++|+.++. ...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~-~~~~~~~----~~G~~~~~~-~g~-l~v~~~~~-~~~~d~~~g~-~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV-EVIDLPG----PNGMAFDRP-DGR-LYVADSGG-IAVVDPDTGK-VTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEEESSS----EEEEEEECT-TSE-EEEEETTC-EEEEETTTTE-EEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeE-EEEecCC----CceEEEEcc-CCE-EEEEEcCc-eEEEecCCCc-EEE
Confidence 456787 666666666788888888765322 2222222 456666533 244 44555554 4555887653 233
Q ss_pred EEEe--cC-CCCCeeEEEecCCCCCcEEEEEecCCc------EEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCc
Q 022111 95 AHTF--ND-HKSSVNSIAWAPHELGLSLACGSSDGN------ISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGA 165 (302)
Q Consensus 95 ~~~~--~~-h~~~i~~l~~~pd~~~~~l~sg~~d~~------v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 165 (302)
+... .. .....+.+++.|+ |.+.++...... -++|.+...+..... . ......+.++|+|++
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~-~--~~~~~pNGi~~s~dg---- 145 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVV-A--DGLGFPNGIAFSPDG---- 145 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGSEEEEEEETTSEEEEE-E--EEESSEEEEEEETTS----
T ss_pred EeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccccceEEECCCCeEEEE-e--cCcccccceEECCcc----
Confidence 3333 12 3456789999887 655555443321 345544443222211 1 112335788898864
Q ss_pred eeecccCCCceeEEEeeCCCcEEEEEEecCccccc---cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 166 LVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMD---CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 166 ~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
..++++-+..+.|..+++......+. .+..+..-.+..-.+++..++ +..++.-..+.|.+++.
T Consensus 146 ---------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G----~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 146 ---------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG----NLWVADWGGGRIVVFDP 212 (246)
T ss_dssp ---------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-----EEEEEETTTEEEEEET
T ss_pred ---------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC----CEEEEEcCCCEEEEECC
Confidence 24556778888899999874322111 112222222346678888875 66777777888999987
Q ss_pred ccCCcceeeeeeccCCCcEEEEEEc-cCCCEEEEe
Q 022111 243 AKEGEQWEGRVLKDFKTPVWSVSWS-LTGNLLAVA 276 (302)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~la~~ 276 (302)
+. .. ...+... ...+.+++|. |+.+.|-+.
T Consensus 213 ~G--~~-~~~i~~p-~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 213 DG--KL-LREIELP-VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TS--CE-EEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred Cc--cE-EEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence 62 11 1222222 2368899994 666655443
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=4.4e-05 Score=71.95 Aligned_cols=207 Identities=15% Similarity=0.183 Sum_probs=121.3
Q ss_pred eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111 46 QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD 125 (302)
Q Consensus 46 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d 125 (302)
+...++..|....++++|+.. .+.|+.|+..|.|+++++.++. .......|+.+|+-+.=+.|. ..+|.+.+..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG~---~e~s~ncH~SavT~vePs~dg-s~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSGS---MEESVNCHQSAVTLVEPSVDG-STQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCcc---ccccccccccccccccccCCc-ceeeeecccc
Confidence 345678889999999999864 5789999999999999997763 344567899999988766663 2344444444
Q ss_pred C-cEEEEEecCCCCeeeeeecccCCC-CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccc
Q 022111 126 G-NISVFTATADGGWDTTRIDQAHPV-GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFP 203 (302)
Q Consensus 126 ~-~v~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~ 203 (302)
. -..+|++..... ..|.. .-.++.|+-.. .+-+.|.......|||+.++....+.+.
T Consensus 1166 ~PlsaLW~~~s~~~-------~~Hsf~ed~~vkFsn~~--------------q~r~~gt~~d~a~~YDvqT~~~l~tylt 1224 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGG-------PRHSFDEDKAVKFSNSL--------------QFRALGTEADDALLYDVQTCSPLQTYLT 1224 (1516)
T ss_pred CchHHHhccccccC-------ccccccccceeehhhhH--------------HHHHhcccccceEEEecccCcHHHHhcC
Confidence 4 566888764221 12322 23455565321 1222233335688999988742212111
Q ss_pred ccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEE
Q 022111 204 ALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTL 283 (302)
Q Consensus 204 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~ 283 (302)
...+....-++..|+|+. ..|+ .||- +||++...... ....+.. -.+-.|+|.|+.++.-+ .|
T Consensus 1225 ~~~~~~y~~n~a~FsP~D----~LIl---ndGv--LWDvR~~~aIh---~FD~ft~-~~~G~FHP~g~eVIINS----EI 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD----TLIL---NDGV--LWDVRIPEAIH---RFDQFTD-YGGGGFHPSGNEVIINS----EI 1287 (1516)
T ss_pred cchhhhhhccccccCCCc----ceEe---eCce--eeeeccHHHHh---hhhhhee-cccccccCCCceEEeec----hh
Confidence 111222233788999973 3332 4664 69998642210 0112221 12346999999887764 46
Q ss_pred eeecCCceEEEee
Q 022111 284 WKEAVDGEWQQVS 296 (302)
Q Consensus 284 w~~~~~~~~~~~~ 296 (302)
||+-+...++.++
T Consensus 1288 wD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1288 WDMRTFKLLHSVP 1300 (1516)
T ss_pred hhhHHHHHHhcCc
Confidence 6654444444333
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.70 E-value=0.033 Score=49.74 Aligned_cols=231 Identities=12% Similarity=0.105 Sum_probs=106.5
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH 101 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 101 (302)
+..++.++.++.+.-+|..++ +.+...... +.+.+ ... .+..++.++.++.+..||.+++.. +.++...
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG--~~~W~~~~~-~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~---~W~~~~~ 174 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDG--KELWRAKLS-SEVLSPPLV----ANGLVVVRTNDGRLTALDAATGER---LWTYSRV 174 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCC--cEeeeeccC-ceeecCCEE----ECCEEEEECCCCeEEEEEcCCCce---eeEEccC
Confidence 445556666666666665432 222221111 11111 111 134566677889999999876532 2222211
Q ss_pred CCCeeEEE--ecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCC---CeEEEEeCCCCCCCceeecccCCCce
Q 022111 102 KSSVNSIA--WAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPV---GVTSVSWAPAMAPGALVGLGLLDPVQ 176 (302)
Q Consensus 102 ~~~i~~l~--~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~~~~~ 176 (302)
...+ .+. -+|-..+..++.+..++.+..+|..++.. .......... .+..+... .. .. .. .+.
T Consensus 175 ~~~~-~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~--~W~~~~~~~~g~~~~~~~~~~-~~--~p-----~~-~~~ 242 (377)
T TIGR03300 175 TPAL-TLRGSASPVIADGGVLVGFAGGKLVALDLQTGQP--LWEQRVALPKGRTELERLVDV-DG--DP-----VV-DGG 242 (377)
T ss_pred CCce-eecCCCCCEEECCEEEEECCCCEEEEEEccCCCE--eeeeccccCCCCCchhhhhcc-CC--cc-----EE-ECC
Confidence 1111 000 01110012567777788888887654321 1111100000 00000000 00 00 00 134
Q ss_pred eEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc
Q 022111 177 KLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD 256 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~ 256 (302)
.++.++.++.++.||+.++...-.. ...... .... .+..|..++.||.|..+|.......|....+..
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~--~~~~~~----~p~~------~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~ 310 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKR--DASSYQ----GPAV------DDNRLYVTDADGVVVALDRRSGSELWKNDELKY 310 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEee--ccCCcc----CceE------eCCEEEEECCCCeEEEEECCCCcEEEccccccC
Confidence 6777788999999999876311110 011111 1111 135677888999999999876544443211111
Q ss_pred CCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce
Q 022111 257 FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE 291 (302)
Q Consensus 257 ~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~ 291 (302)
....+... .+..|.+++.+ .+.+++......
T Consensus 311 --~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 311 --RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred --CccccCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 01111111 35567777666 688888654333
No 317
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.67 E-value=0.039 Score=49.53 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=127.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCC--c---------------------------------------eEEEEe
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSA--S---------------------------------------QHLATL 51 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~--~---------------------------------------~~~~~~ 51 (302)
.|+.+.|.++..-||.|-..|.|-||.+.... . .+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58889999988889999999999998873110 0 111223
Q ss_pred cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecC------CCCCeeEEEec---CCCCC---cEE
Q 022111 52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFND------HKSSVNSIAWA---PHELG---LSL 119 (302)
Q Consensus 52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~------h~~~i~~l~~~---pd~~~---~~l 119 (302)
....++|++++.+. =-.+|.|.++|.+.|-|++...-. ....+.. ....|+++.|+ ..+++ ..+
T Consensus 83 ~~~~g~vtal~~S~---iGFvaigy~~G~l~viD~RGPavI-~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSD---IGFVAIGYESGSLVVIDLRGPAVI-YNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-B---TSEEEEEETTSEEEEEETTTTEEE-EEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCC---CcEEEEEecCCcEEEEECCCCeEE-eeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 34468899999863 237899999999999999765321 1122222 34578888886 22223 468
Q ss_pred EEEecCCcEEEEEecC--CCCeeeeeec--ccCCCCeEEEE-eCCCCCCCceeec-----ccCC--C-ceeEEEeeCCCc
Q 022111 120 ACGSSDGNISVFTATA--DGGWDTTRID--QAHPVGVTSVS-WAPAMAPGALVGL-----GLLD--P-VQKLASCGCDNT 186 (302)
Q Consensus 120 ~sg~~d~~v~~~~~~~--~~~~~~~~~~--~~h~~~v~~~~-~~~~~~~~~~~~~-----~~~~--~-~~~l~s~~~D~~ 186 (302)
.+|...|.+.+|.+.. .+.+...... ..+..++..+. ++.+... ...+. .+.. . ..+++.++ +..
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~-~a~At~~~~~~l~~g~~i~g~vVvvS-e~~ 236 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGE-SALATISAMQGLSKGISIPGYVVVVS-ESD 236 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT---B-B-BHHHHHGGGGT----EEEEEE--SSE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCC-cccCchhHhhccccCCCcCcEEEEEc-ccc
Confidence 8999999999998763 2223221111 12344444443 2111111 11110 0100 1 22444444 567
Q ss_pred EEEEEEecCccccccccccccCCCceeEEEeeCCC-CCCccEEEEEecCCeEEEEEeccCCcceeeeeecc-CCCcEEEE
Q 022111 187 VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNL-GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD-FKTPVWSV 264 (302)
Q Consensus 187 v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~ 264 (302)
+|++.+.+.+. ....+ ...-....+++-|-. ...+..|++-..+|.++++-+-..++.....+... ....+...
T Consensus 237 irv~~~~~~k~---~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 237 IRVFKPPKSKG---AHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp EEEE-TT---E---EEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred eEEEeCCCCcc---cceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 99988754321 11111 111112233442200 01136788889999999998754332211111110 01123456
Q ss_pred EEccCCCEEEEecCCc---eEEeee
Q 022111 265 SWSLTGNLLAVADANN---VTLWKE 286 (302)
Q Consensus 265 ~~spdg~~la~~~~d~---i~~w~~ 286 (302)
.++++|+++.-.+... +.+|..
T Consensus 313 sis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred EECCCCCEEEEeCcccEEEEEEEcc
Confidence 7899999988887654 455554
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.012 Score=55.87 Aligned_cols=198 Identities=11% Similarity=0.068 Sum_probs=112.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC-----cEEEEEecCCCC-e---
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG-----NISVFTATADGG-W--- 139 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~-----~v~~~~~~~~~~-~--- 139 (302)
+..+|.|+.+|.|-+.+- . ....+.|+.+...|-..-+.-+. ...|++.+.|. .+++|++++..+ -
T Consensus 35 ~~~vvigt~~G~V~~Ln~--s--~~~~~~fqa~~~siv~~L~~~~~-~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 35 TGSVVIGTADGRVVILNS--S--FQLIRGFQAYEQSIVQFLYILNK-QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CceEEEeeccccEEEecc--c--ceeeehheecchhhhhHhhcccC-ceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 568999999999888752 1 23345566666553333344332 23566665554 588999874311 1
Q ss_pred ee--eeec---c-cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee
Q 022111 140 DT--TRID---Q-AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR 213 (302)
Q Consensus 140 ~~--~~~~---~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 213 (302)
-+ ..+. . ..+.++++++.+.+ =+.+|.|=.+|.|..+.-+-..-......-....+++|+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~--------------l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT 175 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSED--------------LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPIT 175 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEcc--------------ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCce
Confidence 01 0100 0 01223333333322 256777778888888753210000001111123467899
Q ss_pred EEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCce
Q 022111 214 SVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE 291 (302)
Q Consensus 214 ~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~ 291 (302)
.+.+.-++ ..++-+..-..|.+|.+.... + ....+..++.++.+.+|++....+++|++..+.+|+....|+
T Consensus 176 gL~~~~d~----~s~lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 176 GLALRSDG----KSVLFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGP 247 (933)
T ss_pred eeEEecCC----ceeEEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcce
Confidence 99997765 332333344568899887432 2 123345667788899999876668899888999999876554
No 319
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.0023 Score=59.29 Aligned_cols=208 Identities=15% Similarity=0.140 Sum_probs=118.9
Q ss_pred cccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111 54 HRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 54 h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~ 133 (302)
|...|.--++.. .+++++-|+.-|.+-+|.-..+. ....+..+..+.+..+..+++ ..++|.|+..+.|.+|.+
T Consensus 32 ~~~~v~lTc~ds--t~~~l~~GsS~G~lyl~~R~~~~--~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 32 FPARVKLTCVDA--TEEYLAMGSSAGSVYLYNRHTGE--MRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQL 105 (726)
T ss_pred CcceEEEEEeec--CCceEEEecccceEEEEecCchh--hhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehh
Confidence 444444344433 37899999999999999754332 122233334556667778877 458999999999999987
Q ss_pred cCCCCee---eeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCC
Q 022111 134 TADGGWD---TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSD 210 (302)
Q Consensus 134 ~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~ 210 (302)
....+-. .....+.|+..|++++|++++ ..+.+|-.-|.|.+-.+.....-+...+.+.-..+
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~--------------~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds 171 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNG--------------MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS 171 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccc--------------cEEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence 6533222 233444578899999999864 88999999999988777652111111122223345
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCc-EEEEEEccC----CCEEEEecCCceEEe
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTP-VWSVSWSLT----GNLLAVADANNVTLW 284 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~-v~~~~~spd----g~~la~~~~d~i~~w 284 (302)
.|-.+++.- .+|+.++.-+. .+++...+. .+ .+. +.-++. -....|=|. ..-.+++++-+.|+|
T Consensus 172 ~IVQlD~~q------~~LLVStl~r~-~Lc~tE~et-i~--QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlW 241 (726)
T KOG3621|consen 172 EIVQLDYLQ------SYLLVSTLTRC-ILCQTEAET-IT--QIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLW 241 (726)
T ss_pred ceEEeeccc------ceehHhhhhhh-heeecchhH-HH--HhcCCCcCCccccceEEeeccccCCCceEEEecCCCceE
Confidence 566665532 23333333333 345544321 01 111 111111 122333332 233445557799999
Q ss_pred eecCCce
Q 022111 285 KEAVDGE 291 (302)
Q Consensus 285 ~~~~~~~ 291 (302)
..+..|.
T Consensus 242 ead~~G~ 248 (726)
T KOG3621|consen 242 EADFAGE 248 (726)
T ss_pred Eeeccee
Confidence 9877665
No 320
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.56 E-value=0.048 Score=48.73 Aligned_cols=186 Identities=10% Similarity=0.030 Sum_probs=93.6
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE-----EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW-----QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT 97 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 97 (302)
+..++.++.++.++.+|...+ +.+.........+. ..... +..++.+..++.+..+|.+++.. ..+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~~----~~~v~~~~~~g~v~ald~~tG~~---~W~ 215 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATG--ERLWTYSRVTPALTLRGSASPVIA----DGGVLVGFAGGKLVALDLQTGQP---LWE 215 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEEE----CCEEEEECCCCEEEEEEccCCCE---eee
Confidence 345666777888888887543 23333322111110 11111 23567778889999999876532 111
Q ss_pred ecCC-----CC--CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecc
Q 022111 98 FNDH-----KS--SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLG 170 (302)
Q Consensus 98 ~~~h-----~~--~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 170 (302)
.... .. ....+.-+|--.+..+..++.++.+..+|..++.. ..... ... .. .|..
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~--~W~~~--~~~-~~----~p~~--------- 277 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV--LWKRD--ASS-YQ----GPAV--------- 277 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE--EEeec--cCC-cc----CceE---------
Confidence 1100 00 00001011110123677788899999998764321 11111 000 00 0100
Q ss_pred cCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCc
Q 022111 171 LLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE 247 (302)
Q Consensus 171 ~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~ 247 (302)
.+..++.++.|+.+..+|..++...... ..+... ...+... .+..|..++.+|.|.++|.++...
T Consensus 278 ---~~~~vyv~~~~G~l~~~d~~tG~~~W~~-~~~~~~--~~ssp~i------~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 278 ---DDNRLYVTDADGVVVALDRRSGSELWKN-DELKYR--QLTAPAV------VGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred ---eCCEEEEECCCCeEEEEECCCCcEEEcc-ccccCC--ccccCEE------ECCEEEEEeCCCEEEEEECCCCCE
Confidence 1356777788999999999876311110 011111 1111111 135788999999999999876543
No 321
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.54 E-value=0.015 Score=41.64 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred eeEEEEc---cCC-CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 14 VHDVAMD---FYG-KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 14 v~~~~~s---~~~-~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
|+++++. -|| +-|+.|+.|..||+|+-+ +.+..+..+ +.|.+++-.. +.+++.+-++|+|.+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~----e~~~Ei~e~-~~v~~L~~~~---~~~F~Y~l~NGTVGvY~~~~- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD----EIVAEITET-DKVTSLCSLG---GGRFAYALANGTVGVYDRSQ- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC----cEEEEEecc-cceEEEEEcC---CCEEEEEecCCEEEEEeCcc-
Confidence 5666653 333 588899999999999743 345555543 4577777643 46899999999999997532
Q ss_pred CceeEEEEecCCCCCeeEEEecC-CCCC-cEEEEEecCCcEEE
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAP-HELG-LSLACGSSDGNISV 130 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~p-d~~~-~~l~sg~~d~~v~~ 130 (302)
..|. .+ -+..+.++.+.. +..| ..|++|-.+|.|-+
T Consensus 73 RlWR----iK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWR----IK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eeee----ec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2232 22 233366666542 2112 36888888887753
No 322
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.52 E-value=0.00017 Score=40.18 Aligned_cols=35 Identities=43% Similarity=0.659 Sum_probs=29.8
Q ss_pred cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEE
Q 022111 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWT 241 (302)
Q Consensus 203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd 241 (302)
..+..|...|.+++|+|++ ..+++++.|+.+++|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDG----KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCC----CEEEEecCCCeEEEcC
Confidence 3455788899999999974 7899999999999995
No 323
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.013 Score=55.82 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=74.3
Q ss_pred EEEccCCCEEEEee----CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 17 VAMDFYGKRLATAS----SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 17 ~~~s~~~~~l~s~~----~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
.+|+|...++|.++ ..|.|.||--.+++...+ +..-| ++++||.|. --+|+.|=.-|.+.+|...+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~V-t~P~h---atSLCWHpe--~~vLa~gwe~g~~~v~~~~~~--- 91 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDV-TYPVH---ATSLCWHPE--EFVLAQGWEMGVSDVQKTNTT--- 91 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCccc-cccee---hhhhccChH--HHHHhhccccceeEEEecCCc---
Confidence 56899888888776 567788884333222111 12223 456999653 346778878888999976442
Q ss_pred eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
.....-..|..+|..+.|||+ |..+.++..-|.+.+|...
T Consensus 92 e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEee
Confidence 122233459999999999998 7799999999999999654
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0013 Score=60.88 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=82.9
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
|...|.=-|++..+++++-|+.-|.+++|+...+.. .+....+-.+.+..++.++. ..++|.|+..+.|.++-++..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhcc
Confidence 444454446677899999999999999998754321 12223333334445555542 578888999999999977654
Q ss_pred CceeEEEEe---cCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111 90 NDWTQAHTF---NDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA 135 (302)
Q Consensus 90 ~~~~~~~~~---~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~ 135 (302)
.+......- +.|...|+++.|+++ +..+.+|...|+|.+-.+..
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~--~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKN--GMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCCcceeeccccccCCceEEEEEeccc--ccEEeecCCCceEEEEEech
Confidence 332222211 127789999999998 78999999999998876653
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.40 E-value=0.00063 Score=37.71 Aligned_cols=37 Identities=51% Similarity=0.821 Sum_probs=30.8
Q ss_pred EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 47 HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 47 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++..+..|...|.+++|.+. +.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence 44566788899999999754 57899999999999995
No 326
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.08 E-value=0.18 Score=44.38 Aligned_cols=199 Identities=12% Similarity=0.110 Sum_probs=94.6
Q ss_pred EEEEccCCCEEEEee-C-CCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCcee
Q 022111 16 DVAMDFYGKRLATAS-S-DSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWT 93 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~-~-d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 93 (302)
.+++++||++|+... . +..|-+.|+... +.+..+.- .+...-...+ + .... .-+.|+......+.+.+..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~--kvv~ei~v-p~~~~vy~t~-e--~~~~-~~~~Dg~~~~v~~d~~g~~- 180 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGK--AFVRMMDV-PDCYHIFPTA-N--DTFF-MHCRDGSLAKVGYGTKGNP- 180 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCC--cEEEEEeC-CCCcEEEEec-C--CccE-EEeecCceEEEEecCCCce-
Confidence 578999999888765 3 688999998653 34444321 1111111111 1 1222 2245555555443322211
Q ss_pred EEEE---ecCCCCCeeEE-EecCCCCCcEEEEEecCCcEEEEEecCCCC-----eeeeeeccc----CCCCeEEEEeCCC
Q 022111 94 QAHT---FNDHKSSVNSI-AWAPHELGLSLACGSSDGNISVFTATADGG-----WDTTRIDQA----HPVGVTSVSWAPA 160 (302)
Q Consensus 94 ~~~~---~~~h~~~i~~l-~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-----~~~~~~~~~----h~~~v~~~~~~~~ 160 (302)
...+ +..-+.++..= .|.+.. +.++... ..|+|.+-|+..... +........ .+....-++++|+
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~d-g~~~~vs-~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d 258 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKS-GRLVWPT-YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA 258 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCC-CcEEEEe-cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC
Confidence 1111 11111111100 334421 4444333 339999988653321 111111000 1112222444443
Q ss_pred CCCCceeecccCCCceeEEE-e-e--------CCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEE
Q 022111 161 MAPGALVGLGLLDPVQKLAS-C-G--------CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIAS 230 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s-~-~--------~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 230 (302)
++++.. . + ..+.|-++|..+.+ .+..+. -...+..|+++||++ +..+++
T Consensus 259 --------------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~-vG~~~~~iavS~Dgk--p~lyvt 317 (352)
T TIGR02658 259 --------------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIE-LGHEIDSINVSQDAK--PLLYAL 317 (352)
T ss_pred --------------CCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEe-CCCceeeEEECCCCC--eEEEEe
Confidence 344443 2 1 22579999987753 222221 133588999999972 133444
Q ss_pred EecCCeEEEEEeccC
Q 022111 231 ASQDGTVVIWTCAKE 245 (302)
Q Consensus 231 ~s~D~~i~iwd~~~~ 245 (302)
...++.|.+.|..+.
T Consensus 318 n~~s~~VsViD~~t~ 332 (352)
T TIGR02658 318 STGDKTLYIFDAETG 332 (352)
T ss_pred CCCCCcEEEEECcCC
Confidence 446888999998754
No 327
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.02 E-value=0.067 Score=38.39 Aligned_cols=105 Identities=22% Similarity=0.221 Sum_probs=65.1
Q ss_pred eeEEEecC-CC-CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111 105 VNSIAWAP-HE-LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182 (302)
Q Consensus 105 i~~l~~~p-d~-~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 182 (302)
|++++++. +. ....|+.|+.|..|++|+-.. ...++. -...++++.-.. ..+|+.+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~--e~~~v~~L~~~~---------------~~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEIT--ETDKVTSLCSLG---------------GGRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEe--cccceEEEEEcC---------------CCEEEEEe
Confidence 56666653 11 125799999999999997542 223332 234566665432 25789999
Q ss_pred CCCcEEEEEEecCccccccccccccCCCceeEEEeeC-CCCCCccEEEEEecCCeEE
Q 022111 183 CDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAP-NLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 183 ~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~l~s~s~D~~i~ 238 (302)
..|+|-+|+-....|..+. +..+.++++.. ++.. ...|++|=.+|.|-
T Consensus 61 ~NGTVGvY~~~~RlWRiKS-------K~~~~~~~~~D~~gdG-~~eLI~GwsnGkve 109 (111)
T PF14783_consen 61 ANGTVGVYDRSQRLWRIKS-------KNQVTSMAFYDINGDG-VPELIVGWSNGKVE 109 (111)
T ss_pred cCCEEEEEeCcceeeeecc-------CCCeEEEEEEcCCCCC-ceEEEEEecCCeEE
Confidence 9999999998777666542 33367766643 3211 24578887777653
No 328
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.95 E-value=0.21 Score=42.81 Aligned_cols=193 Identities=13% Similarity=0.210 Sum_probs=99.4
Q ss_pred EEeeCCCCCCEEEEEe-----CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE--e----------
Q 022111 61 VAWAHPKFGSILASCS-----YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG--S---------- 123 (302)
Q Consensus 61 v~~~~~~~~~~l~s~s-----~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg--~---------- 123 (302)
-.|+++ |++|++.- ..|.|-+||.... ...+..+..|---.=.+.+.|| |..|+.+ +
T Consensus 56 g~fs~d--G~~LytTEnd~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~ 129 (305)
T PF07433_consen 56 GVFSPD--GRLLYTTENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRA 129 (305)
T ss_pred EEEcCC--CCEEEEeccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCce
Confidence 467764 88888763 3678999998732 3455566555433345667887 4344443 2
Q ss_pred ------cCCcEEEEEecCCCCeeeeeec-ccCCCCeEEEEeCCCCCCCceeecccC----CCceeEEEeeCCCcEEEEEE
Q 022111 124 ------SDGNISVFTATADGGWDTTRID-QAHPVGVTSVSWAPAMAPGALVGLGLL----DPVQKLASCGCDNTVKVWKM 192 (302)
Q Consensus 124 ------~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~l~s~~~D~~v~iwd~ 192 (302)
++-++.+-|..++.-.....+. .-|...+..+++.+++. .+.+.... +.--+++.-..++.++..++
T Consensus 130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~--V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~ 207 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT--VAFAMQYQGDPGDAPPLVALHRRGGALRLLPA 207 (305)
T ss_pred ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc--EEEEEecCCCCCccCCeEEEEcCCCcceeccC
Confidence 1122222222222111212221 12445677788776531 11111110 00123444444444555444
Q ss_pred ecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe-cCCeEEEEEeccCCcceeeeeeccC-CCcEEEEEEccCC
Q 022111 193 YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS-QDGTVVIWTCAKEGEQWEGRVLKDF-KTPVWSVSWSLTG 270 (302)
Q Consensus 193 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s-~D~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~spdg 270 (302)
.... ...-.++|-+|++++++ ..++..| ..+.+.+||..+. .++... -..+..++-.+++
T Consensus 208 p~~~--------~~~l~~Y~gSIa~~~~g----~~ia~tsPrGg~~~~~d~~tg------~~~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 208 PEEQ--------WRRLNGYIGSIAADRDG----RLIAVTSPRGGRVAVWDAATG------RLLGSVPLPDACGVAPTDDG 269 (305)
T ss_pred ChHH--------HHhhCCceEEEEEeCCC----CEEEEECCCCCEEEEEECCCC------CEeeccccCceeeeeecCCc
Confidence 3321 12345779999999985 5565555 5778999998753 222222 1246777776666
Q ss_pred CEEEEecCCc
Q 022111 271 NLLAVADANN 280 (302)
Q Consensus 271 ~~la~~~~d~ 280 (302)
++++.+...
T Consensus 270 -f~~ssG~G~ 278 (305)
T PF07433_consen 270 -FLVSSGQGQ 278 (305)
T ss_pred -eEEeCCCcc
Confidence 555554434
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.87 E-value=0.2 Score=41.32 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=92.7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeee-ccc
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRI-DQA 147 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~-~~~ 147 (302)
+.++++++.++.+..||..++. .+..+.. ..++...... + +..++.++.++.++.+|..++.. .... ...
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~---~~W~~~~-~~~~~~~~~~-~--~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~ 106 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGK---VLWRFDL-PGPISGAPVV-D--GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTS 106 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSE---EEEEEEC-SSCGGSGEEE-E--TTEEEEEETTSEEEEEETTTSCE--EEEEEE-S
T ss_pred CCEEEEEcCCCEEEEEECCCCC---EEEEeec-cccccceeee-c--ccccccccceeeeEecccCCcce--eeeecccc
Confidence 4567777899999999987763 3333332 2221111111 1 23566677888888888654332 1221 101
Q ss_pred -CCCC-eEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcccccccccccc-C-CCc------e-eEEE
Q 022111 148 -HPVG-VTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQM-H-SDW------V-RSVA 216 (302)
Q Consensus 148 -h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~-h-~~~------v-~~v~ 216 (302)
.... ........ .+..++.+..++.|..+|++++...... .... . ... + ..+.
T Consensus 107 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~g~l~~~d~~tG~~~w~~--~~~~~~~~~~~~~~~~~~~~~~ 170 (238)
T PF13360_consen 107 SPPAGVRSSSSPAV--------------DGDRLYVGTSSGKLVALDPKTGKLLWKY--PVGEPRGSSPISSFSDINGSPV 170 (238)
T ss_dssp SCTCSTB--SEEEE--------------ETTEEEEEETCSEEEEEETTTTEEEEEE--ESSTT-SS--EEEETTEEEEEE
T ss_pred ccccccccccCceE--------------ecCEEEEEeccCcEEEEecCCCcEEEEe--ecCCCCCCcceeeecccccceE
Confidence 0000 00000000 1356777777899999998877421111 1110 0 010 1 1222
Q ss_pred eeCCCCCCccEEEEEecCCe-EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCce-EE
Q 022111 217 WAPNLGLPKSTIASASQDGT-VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGE-WQ 293 (302)
Q Consensus 217 ~~p~~~~~~~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~~-~~ 293 (302)
+. + ..+..++.++. +.+ |+.+....|.. .. ..+..+ ..+++..|.+++++ .+..||...... |+
T Consensus 171 ~~-~-----~~v~~~~~~g~~~~~-d~~tg~~~w~~----~~-~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 171 IS-D-----GRVYVSSGDGRVVAV-DLATGEKLWSK----PI-SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp CC-T-----TEEEEECCTSSEEEE-ETTTTEEEEEE----CS-S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EE-C-----CEEEEEcCCCeEEEE-ECCCCCEEEEe----cC-CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 22 1 25666666664 555 87765333321 11 122221 34667777777655 799999765433 64
No 330
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0094 Score=54.71 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=71.2
Q ss_pred cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCee-EEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVN-SIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~-~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
-.|..+.|+|. =.++|.+..+|.+.+..++ |..+.++..|+..++ +++|.|| |+.||.|-.||+|++-|+.
T Consensus 21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n----~qRlwtip~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN----WQRLWTIPIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCc--cchhheeccCCcEEEEEec----cceeEeccCCCCccceeeeecCC--CCEEEEEecCCeEEEEEcc
Confidence 35677889764 3689999999999998765 345677777777777 9999999 8899999999999999998
Q ss_pred CCCCeeeeeecccCCCCeEEEEeCC
Q 022111 135 ADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 135 ~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
++...... .......|+++-|+|
T Consensus 93 ~~~~l~~~--~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSF--LFSVETDISKGIWDR 115 (665)
T ss_pred CCCceecc--ccccccchheeeccc
Confidence 76433211 113345677888865
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.76 E-value=0.11 Score=50.30 Aligned_cols=101 Identities=13% Similarity=0.074 Sum_probs=68.9
Q ss_pred eEEEeeCCCcEEEEEEecCcccc-c-cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111 177 KLASCGCDNTVKVWKMYNGIWKM-D-CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL 254 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~~~~~~~-~-~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 254 (302)
.-+.|-.++.+..||++-...++ . ....+ .....-.|++-+.+ .+||.||.+|.||+||--.. .....+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~-----G~iavgs~~G~IRLyd~~g~---~AKT~l 614 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTED-----GYIAVGSNKGDIRLYDRLGK---RAKTAL 614 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCC-----ceEEEEeCCCcEEeecccch---hhhhcC
Confidence 45667778889999987532111 0 00011 12333556666655 47999999999999984321 112344
Q ss_pred ccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 255 KDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 255 ~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
.+.+.||..|.-+.||++|++.+..-|.|.+.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 67789999999999999999998777888875
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.71 E-value=0.31 Score=47.37 Aligned_cols=136 Identities=12% Similarity=0.145 Sum_probs=79.0
Q ss_pred eCCCcEEEEeecCCCceEEEEecCcccC-eEEEEeeCCC-----CCCEEEEEeCCCeEEEEEcCCCCceeEE----EEec
Q 022111 30 SSDSSIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPK-----FGSILASCSYDGQVIIWKEGNQNDWTQA----HTFN 99 (302)
Q Consensus 30 ~~d~~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~----~~~~ 99 (302)
.....++-.|++. ++.+....-|... |..++ |.. .+...+.|-.+..+..||++-... +.+ +.+.
T Consensus 501 ~~~~~ly~mDLe~--GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLER--GKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYS 575 (794)
T ss_pred CCCCceEEEecCC--CcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccc
Confidence 3446666667755 4566666655544 65554 321 133456777888999999875421 122 2222
Q ss_pred CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEE
Q 022111 100 DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLA 179 (302)
Q Consensus 100 ~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (302)
.+....|++-..+ | .||.|+.+|.|||||-. + ......+. +-..+|.++.-+.+ |+.|+
T Consensus 576 -~~~~Fs~~aTt~~--G-~iavgs~~G~IRLyd~~-g-~~AKT~lp-~lG~pI~~iDvt~D--------------Gkwil 634 (794)
T PF08553_consen 576 -SKNNFSCFATTED--G-YIAVGSNKGDIRLYDRL-G-KRAKTALP-GLGDPIIGIDVTAD--------------GKWIL 634 (794)
T ss_pred -cCCCceEEEecCC--c-eEEEEeCCCcEEeeccc-c-hhhhhcCC-CCCCCeeEEEecCC--------------CcEEE
Confidence 3345667766544 5 69999999999999842 1 11112222 33456777765544 44433
Q ss_pred EeeCCCcEEEEEE
Q 022111 180 SCGCDNTVKVWKM 192 (302)
Q Consensus 180 s~~~D~~v~iwd~ 192 (302)
+.++.++-|++.
T Consensus 635 -aTc~tyLlLi~t 646 (794)
T PF08553_consen 635 -ATCKTYLLLIDT 646 (794)
T ss_pred -EeecceEEEEEE
Confidence 334678888886
No 333
>PHA02713 hypothetical protein; Provisional
Probab=96.61 E-value=0.16 Score=47.91 Aligned_cols=63 Identities=3% Similarity=0.066 Sum_probs=35.9
Q ss_pred ceeEEEeeCC------CcEEEEEEec-CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCC--eEEEEEeccC
Q 022111 175 VQKLASCGCD------NTVKVWKMYN-GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDG--TVVIWTCAKE 245 (302)
Q Consensus 175 ~~~l~s~~~D------~~v~iwd~~~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~--~i~iwd~~~~ 245 (302)
++..+.||.+ ..+..||..+ ..|... ..+.........+.+ ++...+.|+.|+ ++..||..+.
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~--~~m~~~r~~~~~~~~------~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI--TTTESRLSALHTILH------DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEc--cccCcccccceeEEE------CCEEEEEeeecceeehhhcCcccc
Confidence 4566767654 2467899887 677532 222212222222322 147788888888 6777776653
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.0053 Score=58.24 Aligned_cols=75 Identities=25% Similarity=0.448 Sum_probs=58.5
Q ss_pred eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeeecCCc
Q 022111 212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDG 290 (302)
Q Consensus 212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~~~ 290 (302)
+.+++|+|.. -.|+.|=+-|.+.+|+..... ...+...|..+|..+.|||+|..+.+++.- .+.+|....-|
T Consensus 62 atSLCWHpe~----~vLa~gwe~g~~~v~~~~~~e---~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 62 ATSLCWHPEE----FVLAQGWEMGVSDVQKTNTTE---THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred hhhhccChHH----HHHhhccccceeEEEecCCce---eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 5789999973 568888889999999876432 234556788999999999999999999766 59999976445
Q ss_pred eEE
Q 022111 291 EWQ 293 (302)
Q Consensus 291 ~~~ 293 (302)
+.+
T Consensus 135 ~~q 137 (1416)
T KOG3617|consen 135 EIQ 137 (1416)
T ss_pred ccc
Confidence 543
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.017 Score=53.14 Aligned_cols=74 Identities=19% Similarity=0.413 Sum_probs=56.0
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCcee-EEEeeCCCCCCccE
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVR-SVAWAPNLGLPKST 227 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~~ 227 (302)
+..+..+.|+|.+ ..||.+.++|.|-+..+.-. .+-++.-|...++ +++|.||| +.
T Consensus 20 ~~~i~~~ewnP~~--------------dLiA~~t~~gelli~R~n~q-----Rlwtip~p~~~v~~sL~W~~DG----kl 76 (665)
T KOG4640|consen 20 PINIKRIEWNPKM--------------DLIATRTEKGELLIHRLNWQ-----RLWTIPIPGENVTASLCWRPDG----KL 76 (665)
T ss_pred ccceEEEEEcCcc--------------chhheeccCCcEEEEEeccc-----eeEeccCCCCccceeeeecCCC----CE
Confidence 4457889999976 68899999998888777521 1223333444455 99999996 78
Q ss_pred EEEEecCCeEEEEEeccC
Q 022111 228 IASASQDGTVVIWTCAKE 245 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~ 245 (302)
||.|=.||+|++-|+.+.
T Consensus 77 laVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 77 LAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred EEEEecCCeEEEEEccCC
Confidence 999999999999998764
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.53 E-value=0.44 Score=40.86 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=101.3
Q ss_pred CCEEEEEeCCCe-EEEEEcCCCCceeEEEEecCCC--CCeeEEEecCCCCCcEEEEEe-----cCCcEEEEEecCCCCee
Q 022111 69 GSILASCSYDGQ-VIIWKEGNQNDWTQAHTFNDHK--SSVNSIAWAPHELGLSLACGS-----SDGNISVFTATADGGWD 140 (302)
Q Consensus 69 ~~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~h~--~~i~~l~~~pd~~~~~l~sg~-----~d~~v~~~~~~~~~~~~ 140 (302)
+..++.+-.-|+ +.+||..++.. .+.+.... ...---.|+|| |.+|.+.= ..|.|-+||.... ...
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~---~~~~~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~G~IgVyd~~~~-~~r 90 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQL---LQRLWAPPGRHFYGHGVFSPD--GRLLYTTENDYETGRGVIGVYDAARG-YRR 90 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCce---eeEEcCCCCCEEecCEEEcCC--CCEEEEeccccCCCcEEEEEEECcCC-cEE
Confidence 455555555444 55677766532 22221111 11123468998 66777653 3478999998722 222
Q ss_pred eeeecccCCCCeEEEEeCCCCCCCceeec---ccCCCc--eeEEEeeCCCcEEEEEEecCcccccccccc--ccCCCcee
Q 022111 141 TTRIDQAHPVGVTSVSWAPAMAPGALVGL---GLLDPV--QKLASCGCDNTVKVWKMYNGIWKMDCFPAL--QMHSDWVR 213 (302)
Q Consensus 141 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~---~~~~~~--~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~ 213 (302)
+-++. .|...--.+.+.|++.. -+++. ...++. ..|=-...+..+-+.|..++... ....+ .-|.-.|+
T Consensus 91 i~E~~-s~GIGPHel~l~pDG~t-LvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll--~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 91 IGEFP-SHGIGPHELLLMPDGET-LVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL--EQVELPPDLHQLSIR 166 (305)
T ss_pred EeEec-CCCcChhhEEEcCCCCE-EEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee--eeeecCcccccccee
Confidence 23332 33333334556665411 11111 011111 12222333445555555555211 01123 34667788
Q ss_pred EEEeeCCCCCCccEEEEEecC-C-------eEEEEEeccCCccee--eeeeccCCCcEEEEEEccCCCEEEEecCC--ce
Q 022111 214 SVAWAPNLGLPKSTIASASQD-G-------TVVIWTCAKEGEQWE--GRVLKDFKTPVWSVSWSLTGNLLAVADAN--NV 281 (302)
Q Consensus 214 ~v~~~p~~~~~~~~l~s~s~D-~-------~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i 281 (302)
-+++.+++ .++.+.+. + -+-+++....-.... ......+..-+-||+++++|.++++.+.. .+
T Consensus 167 HLa~~~~G-----~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 167 HLAVDGDG-----TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred eEEecCCC-----cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 88888875 23333221 1 122222111000000 00012344668999999999999888776 59
Q ss_pred EEeeecCCceEEE
Q 022111 282 TLWKEAVDGEWQQ 294 (302)
Q Consensus 282 ~~w~~~~~~~~~~ 294 (302)
.+||.+ .|++..
T Consensus 242 ~~~d~~-tg~~~~ 253 (305)
T PF07433_consen 242 AVWDAA-TGRLLG 253 (305)
T ss_pred EEEECC-CCCEee
Confidence 999865 455543
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.52 E-value=0.28 Score=44.76 Aligned_cols=142 Identities=16% Similarity=0.280 Sum_probs=71.6
Q ss_pred CCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEE
Q 022111 101 HKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLAS 180 (302)
Q Consensus 101 h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s 180 (302)
....+..+.++|+ +..++. ..|+...+|... .+.... ........|.+. ..+|.
T Consensus 31 ~~~~p~~ls~npn--gr~v~V-~g~geY~iyt~~---~~r~k~-----~G~g~~~vw~~~---------------n~yAv 84 (443)
T PF04053_consen 31 CEIYPQSLSHNPN--GRFVLV-CGDGEYEIYTAL---AWRNKA-----FGSGLSFVWSSR---------------NRYAV 84 (443)
T ss_dssp -SS--SEEEE-TT--SSEEEE-EETTEEEEEETT---TTEEEE-----EEE-SEEEE-TS---------------SEEEE
T ss_pred CCcCCeeEEECCC--CCEEEE-EcCCEEEEEEcc---CCcccc-----cCceeEEEEecC---------------ccEEE
Confidence 4556789999997 556666 557777787622 122111 122355778763 35677
Q ss_pred eeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCC-
Q 022111 181 CGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKT- 259 (302)
Q Consensus 181 ~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~- 259 (302)
-...+.|+|+.-.+... ...+. -...+..|-. | ..|+.. .++.|.+||+.+.. +......
T Consensus 85 ~~~~~~I~I~kn~~~~~----~k~i~-~~~~~~~If~---G----~LL~~~-~~~~i~~yDw~~~~------~i~~i~v~ 145 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEV----VKSIK-LPFSVEKIFG---G----NLLGVK-SSDFICFYDWETGK------LIRRIDVS 145 (443)
T ss_dssp E-TTS-EEEEETTEE-T----T------SS-EEEEE----S----SSEEEE-ETTEEEEE-TTT--------EEEEESS-
T ss_pred EECCCeEEEEEcCcccc----ceEEc-CCcccceEEc---C----cEEEEE-CCCCEEEEEhhHcc------eeeEEecC
Confidence 76688899973211110 00111 0112334322 2 334444 44489999997542 2222222
Q ss_pred cEEEEEEccCCCEEEEecCCceEEeeec
Q 022111 260 PVWSVSWSLTGNLLAVADANNVTLWKEA 287 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~~d~i~~w~~~ 287 (302)
+|..+-||++|+++|..+.+++.+.+..
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 3789999999999999998888887753
No 338
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.79 Score=43.43 Aligned_cols=232 Identities=18% Similarity=0.261 Sum_probs=118.9
Q ss_pred CCCEEEEeeCCC------cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC------CeEEEEEcCCC
Q 022111 22 YGKRLATASSDS------SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD------GQVIIWKEGNQ 89 (302)
Q Consensus 22 ~~~~l~s~~~d~------~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~iwd~~~~ 89 (302)
.+..++.||.++ .+..||...+....+..+.. ...-.++++.. +.+.++|+.| .++-.||....
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~-~r~~~~~~~~~---~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS-PRCRVGVAVLN---GKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc-ccccccEEEEC---CEEEEEccccCCCcccceEEEecCCCC
Confidence 356777888774 57788876554444444432 22233455532 6788999998 34566777654
Q ss_pred CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-----EEEEEecCCCCeeeee-ecccCCCCeEEEEeCCCCCC
Q 022111 90 NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-----ISVFTATADGGWDTTR-IDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 90 ~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-----v~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 163 (302)
.|..+..............+ + |.+.|.|+.|+. +..||..+ ..|.... .. ..........+
T Consensus 360 -~W~~~a~M~~~R~~~~v~~l--~--g~iYavGG~dg~~~l~svE~YDp~~-~~W~~va~m~-~~r~~~gv~~~------ 426 (571)
T KOG4441|consen 360 -QWTPVAPMNTKRSDFGVAVL--D--GKLYAVGGFDGEKSLNSVECYDPVT-NKWTPVAPML-TRRSGHGVAVL------ 426 (571)
T ss_pred -ceeccCCccCccccceeEEE--C--CEEEEEeccccccccccEEEecCCC-CcccccCCCC-cceeeeEEEEE------
Confidence 46654433322222222222 2 668888888864 44555442 2343211 00 00001111111
Q ss_pred CceeecccCCCceeEEEeeCCC------cEEEEEEecCcccccc-ccc-cccCCCceeEEEeeCCCCCCccEEEEEecCC
Q 022111 164 GALVGLGLLDPVQKLASCGCDN------TVKVWKMYNGIWKMDC-FPA-LQMHSDWVRSVAWAPNLGLPKSTIASASQDG 235 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~------~v~iwd~~~~~~~~~~-~~~-~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~ 235 (302)
++...+.||.|+ .+..||..++.|.... ..+ ..+|. ...+ ++...+.|+.|+
T Consensus 427 ----------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g----~a~~------~~~iYvvGG~~~ 486 (571)
T KOG4441|consen 427 ----------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG----VAVL------NGKIYVVGGFDG 486 (571)
T ss_pred ----------CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce----EEEE------CCEEEEECCccC
Confidence 256778887554 5677888888775321 111 11221 1111 136677787776
Q ss_pred -----eEEEEEeccCCcceeeeeeccCC---CcEEEEEEccCCCEEEEecCC------ceEEeeecCCceEEEeee
Q 022111 236 -----TVVIWTCAKEGEQWEGRVLKDFK---TPVWSVSWSLTGNLLAVADAN------NVTLWKEAVDGEWQQVSV 297 (302)
Q Consensus 236 -----~i~iwd~~~~~~~~~~~~~~~~~---~~v~~~~~spdg~~la~~~~d------~i~~w~~~~~~~~~~~~~ 297 (302)
++..+|.... .|... .... ..+..+.+ ++++.++|+.+ ++..||. +.+.|.+...
T Consensus 487 ~~~~~~VE~ydp~~~--~W~~v--~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp-~~d~W~~~~~ 555 (571)
T KOG4441|consen 487 TSALSSVERYDPETN--QWTMV--APMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDP-ETDTWTEVTE 555 (571)
T ss_pred CCccceEEEEcCCCC--ceeEc--ccCccccccccEEEE--CCEEEEEecccCccccceeEEcCC-CCCceeeCCC
Confidence 3666777654 35322 2222 22222332 56677777654 3556653 4567877654
No 339
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.42 E-value=0.44 Score=39.69 Aligned_cols=204 Identities=15% Similarity=0.193 Sum_probs=105.6
Q ss_pred EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEec-CCCCCcEEEEEecCCcEEEEEecCCCC
Q 022111 60 QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWA-PHELGLSLACGSSDGNISVFTATADGG 138 (302)
Q Consensus 60 ~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~-pd~~~~~l~sg~~d~~v~~~~~~~~~~ 138 (302)
++.|.+. .+.++++--..+.|..|+..+.. ...+.... ...+++. ++ +. ++.+.. +.+.++|..+. .
T Consensus 4 gp~~d~~-~g~l~~~D~~~~~i~~~~~~~~~----~~~~~~~~--~~G~~~~~~~--g~-l~v~~~-~~~~~~d~~~g-~ 71 (246)
T PF08450_consen 4 GPVWDPR-DGRLYWVDIPGGRIYRVDPDTGE----VEVIDLPG--PNGMAFDRPD--GR-LYVADS-GGIAVVDPDTG-K 71 (246)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTTTE----EEEEESSS--EEEEEEECTT--SE-EEEEET-TCEEEEETTTT-E
T ss_pred ceEEECC-CCEEEEEEcCCCEEEEEECCCCe----EEEEecCC--CceEEEEccC--CE-EEEEEc-CceEEEecCCC-c
Confidence 4566542 36777777788999999986642 22222222 6667776 54 44 444444 44455575533 2
Q ss_pred eee-eeec-cc-CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCc------EEEEEEecCccccccccccccCC
Q 022111 139 WDT-TRID-QA-HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNT------VKVWKMYNGIWKMDCFPALQMHS 209 (302)
Q Consensus 139 ~~~-~~~~-~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~------v~iwd~~~~~~~~~~~~~~~~h~ 209 (302)
+.. .... .. .....+.+++.|++ .+.++...... =+||.+.... +... ....-
T Consensus 72 ~~~~~~~~~~~~~~~~~ND~~vd~~G--------------~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~---~~~~~ 133 (246)
T PF08450_consen 72 VTVLADLPDGGVPFNRPNDVAVDPDG--------------NLYVTDSGGGGASGIDPGSVYRIDPDG-KVTV---VADGL 133 (246)
T ss_dssp EEEEEEEETTCSCTEEEEEEEE-TTS---------------EEEEEECCBCTTCGGSEEEEEEETTS-EEEE---EEEEE
T ss_pred EEEEeeccCCCcccCCCceEEEcCCC--------------CEEEEecCCCccccccccceEEECCCC-eEEE---EecCc
Confidence 221 2211 11 22345667776653 44554433211 2333333221 1111 11112
Q ss_pred CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC---CcEEEEEEccCCCEEEEecC-CceEEe
Q 022111 210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK---TPVWSVSWSLTGNLLAVADA-NNVTLW 284 (302)
Q Consensus 210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~---~~v~~~~~spdg~~la~~~~-d~i~~w 284 (302)
..-+.|+|+|++ ...+++-+..+.|..+++........ .+...+.. ...-.+++.++|++.++.-. +.|.++
T Consensus 134 ~~pNGi~~s~dg---~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 134 GFPNGIAFSPDG---KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp SSEEEEEEETTS---SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred ccccceEECCcc---hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 335899999996 23456778888898888865432111 12222222 23678999999988766544 478888
Q ss_pred eecCCce-EEEeeec
Q 022111 285 KEAVDGE-WQQVSVV 298 (302)
Q Consensus 285 ~~~~~~~-~~~~~~~ 298 (302)
+.. |. ......+
T Consensus 211 ~p~--G~~~~~i~~p 223 (246)
T PF08450_consen 211 DPD--GKLLREIELP 223 (246)
T ss_dssp ETT--SCEEEEEE-S
T ss_pred CCC--ccEEEEEcCC
Confidence 854 44 4434333
No 340
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.31 E-value=0.49 Score=38.94 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=94.7
Q ss_pred CCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeE-EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEec-
Q 022111 22 YGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVW-QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFN- 99 (302)
Q Consensus 22 ~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~- 99 (302)
++..+++++.++.++.||..++ +.+..... ...+. ..... +..++.++.|+.+..+|..++..........
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG--~~~W~~~~-~~~~~~~~~~~----~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTG--KVLWRFDL-PGPISGAPVVD----GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTS--EEEEEEEC-SSCGGSGEEEE----TTEEEEEETTSEEEEEETTTSCEEEEEEE-SS
T ss_pred eCCEEEEEcCCCEEEEEECCCC--CEEEEeec-cccccceeeec----ccccccccceeeeEecccCCcceeeeeccccc
Confidence 4667777889999999997554 33333321 11111 11111 3556666788899999987765321111111
Q ss_pred -CCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCcee
Q 022111 100 -DHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQK 177 (302)
Q Consensus 100 -~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (302)
... .......+. +..++.+..++.+..+|..++.. ..............+... ....+.....++ .
T Consensus 108 ~~~~~~~~~~~~~~----~~~~~~~~~~g~l~~~d~~tG~~--~w~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 175 (238)
T PF13360_consen 108 PPAGVRSSSSPAVD----GDRLYVGTSSGKLVALDPKTGKL--LWKYPVGEPRGSSPISSF-----SDINGSPVISDG-R 175 (238)
T ss_dssp CTCSTB--SEEEEE----TTEEEEEETCSEEEEEETTTTEE--EEEEESSTT-SS--EEEE-----TTEEEEEECCTT-E
T ss_pred cccccccccCceEe----cCEEEEEeccCcEEEEecCCCcE--EEEeecCCCCCCcceeee-----cccccceEEECC-E
Confidence 011 111222222 34678888899999998765432 122211110100100000 000000011123 5
Q ss_pred EEEeeCCCc-EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 178 LASCGCDNT-VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 178 l~s~~~D~~-v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
+..++.++. +.+ |+.++..... .... .+..+ ..++ +..|..++.++.|.+||+++.+..|
T Consensus 176 v~~~~~~g~~~~~-d~~tg~~~w~--~~~~----~~~~~-~~~~----~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 176 VYVSSGDGRVVAV-DLATGEKLWS--KPIS----GIYSL-PSVD----GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEECCTSSEEEE-ETTTTEEEEE--ECSS-----ECEC-EECC----CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEcCCCeEEEE-ECCCCCEEEE--ecCC----CccCC-ceee----CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 555555664 555 8877641110 0011 12221 1223 3667777799999999998654333
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.23 E-value=0.59 Score=39.12 Aligned_cols=207 Identities=11% Similarity=0.171 Sum_probs=103.4
Q ss_pred EecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111 50 TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129 (302)
Q Consensus 50 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~ 129 (302)
.+.+-...+..|+|.++ .+++++.....+.|...+.+ +.. .....+.+ .+-.-.|++.-+ +.++++--.++.+.
T Consensus 16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G~v-lr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-GKV-LRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLY 89 (248)
T ss_dssp E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEETT---E-EEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEE
T ss_pred ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcCC-CCE-EEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEE
Confidence 45565667999999875 35677777778887777753 221 11222333 234567777654 55555555688888
Q ss_pred EEEecCCCC-eee-----eeec--ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec--Ccccc
Q 022111 130 VFTATADGG-WDT-----TRID--QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN--GIWKM 199 (302)
Q Consensus 130 ~~~~~~~~~-~~~-----~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~--~~~~~ 199 (302)
++++..... ... ..+. ..+...+..++|+|.. +.|+.+-.....+||.++. ....+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--------------~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--------------NRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTT--------------TEEEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--------------CEEEEEeCCCChhhEEEccccCccce
Confidence 888743221 111 1111 1234567889998854 3344445556677777764 11000
Q ss_pred c-----cccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee-eeeeccCC------CcEEEEEEc
Q 022111 200 D-----CFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFK------TPVWSVSWS 267 (302)
Q Consensus 200 ~-----~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~------~~v~~~~~s 267 (302)
. ..........-+.+++++|.. +..++-+.+.+.|-+.|.... ... ..+..++. -..-.|+|.
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t---~~lliLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRT---GHLLILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTT---TEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred eeccccccccccceeccccceEEcCCC---CeEEEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEEC
Confidence 0 001111233347889999974 577888888999999885432 111 11112211 235689999
Q ss_pred cCCCEEEEecCCce
Q 022111 268 LTGNLLAVADANNV 281 (302)
Q Consensus 268 pdg~~la~~~~d~i 281 (302)
++|++.++.-.+-.
T Consensus 231 ~~G~LYIvsEpNlf 244 (248)
T PF06977_consen 231 PDGNLYIVSEPNLF 244 (248)
T ss_dssp TT--EEEEETTTEE
T ss_pred CCCCEEEEcCCceE
Confidence 99999888865533
No 342
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.18 E-value=0.77 Score=43.62 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=86.4
Q ss_pred CCCCeeEEEecCCCCCcEEEEEe------cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCC
Q 022111 101 HKSSVNSIAWAPHELGLSLACGS------SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDP 174 (302)
Q Consensus 101 h~~~i~~l~~~pd~~~~~l~sg~------~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 174 (302)
....+...+++|| |..++... .|..-.||-...++.. ..+..+. ..+...|+|++. .++...-...
T Consensus 348 ~~~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~g~--~~t~PsWspDG~--~lw~v~dg~~ 419 (591)
T PRK13616 348 QMGNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLEGH--SLTRPSWSLDAD--AVWVVVDGNT 419 (591)
T ss_pred cccCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeecCC--CCCCceECCCCC--ceEEEecCcc
Confidence 3346788899998 55555554 2444455544322221 1221122 367788998742 1110000000
Q ss_pred ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc-CCcceee--
Q 022111 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK-EGEQWEG-- 251 (302)
Q Consensus 175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~-- 251 (302)
-.++......+.+.+.++..+. . .. ...+.|.++.||||+ ..|+-.. ++.|.+=-+.. .......
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge----~-~~--~~~g~Issl~wSpDG----~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASA----V-AS--RVPGPISELQLSRDG----VRAAMII-GGKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred eEEEeccCCCceEEEEeccCch----h-hh--ccCCCcCeEEECCCC----CEEEEEE-CCEEEEEEEEeCCCCceeecc
Confidence 0011111223344444554331 1 11 234569999999997 5555554 45555532222 1111100
Q ss_pred --eeeccCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEEE
Q 022111 252 --RVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQQ 294 (302)
Q Consensus 252 --~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~ 294 (302)
.+.......+.+++|..++.+++........+|....+|....
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred cEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcccc
Confidence 1122334456889999999866444323567888877777654
No 343
>PHA02713 hypothetical protein; Provisional
Probab=96.14 E-value=0.12 Score=48.79 Aligned_cols=152 Identities=10% Similarity=0.106 Sum_probs=76.3
Q ss_pred CCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-----------------
Q 022111 22 YGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG----------------- 79 (302)
Q Consensus 22 ~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~----------------- 79 (302)
+++..+.||.++ ++..||........+..+.........+.+ ++++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE----CCEEEEEeCCCcccccccccccccccccc
Confidence 466777787654 367788765444433333211111112222 267778887653
Q ss_pred ------eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC------CcEEEEEecCCCCeeeee-ecc
Q 022111 80 ------QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD------GNISVFTATADGGWDTTR-IDQ 146 (302)
Q Consensus 80 ------~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~~~~~~~~~~~~~-~~~ 146 (302)
++..||+.+ +.|..+............+.+ + +.+.+.|+.+ ..+..||..+...|.... +.
T Consensus 427 ~~~~~~~ve~YDP~t-d~W~~v~~m~~~r~~~~~~~~--~--~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~- 500 (557)
T PHA02713 427 DTHSSNKVIRYDTVN-NIWETLPNFWTGTIRPGVVSH--K--DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE- 500 (557)
T ss_pred cccccceEEEECCCC-CeEeecCCCCcccccCcEEEE--C--CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-
Confidence 466787765 346544332211111122222 2 4556666654 235667765423454321 11
Q ss_pred cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCC--cEEEEEEecCcccc
Q 022111 147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDN--TVKVWKMYNGIWKM 199 (302)
Q Consensus 147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~--~v~iwd~~~~~~~~ 199 (302)
........... +++..+.||.|+ .+..||..+..|..
T Consensus 501 ~~r~~~~~~~~----------------~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 501 SRLSALHTILH----------------DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred cccccceeEEE----------------CCEEEEEeeecceeehhhcCcccccccc
Confidence 00011111111 257888999888 77889988887764
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.86 E-value=0.66 Score=42.19 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=83.5
Q ss_pred CCCCeeEEEecCCCCCcEEEEE---ecC-CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111 101 HKSSVNSIAWAPHELGLSLACG---SSD-GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ 176 (302)
Q Consensus 101 h~~~i~~l~~~pd~~~~~l~sg---~~d-~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 176 (302)
-...+..-+|+|+. ..++.. ... ..+.++++..+......... + ......|+|++ .+
T Consensus 191 ~~~~~~~p~ws~~~--~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g---~~~~P~fspDG-------------~~ 251 (425)
T COG0823 191 SGSLILTPAWSPDG--KKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-G---NNGAPAFSPDG-------------SK 251 (425)
T ss_pred cCcceeccccCcCC--CceEEEEEecCCCceEEEEeccCCccceeeccC-C---ccCCccCCCCC-------------CE
Confidence 34556667788883 333322 112 34666776644322222211 2 22345677765 25
Q ss_pred eEEEeeCCCc--EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111 177 KLASCGCDNT--VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL 254 (302)
Q Consensus 177 ~l~s~~~D~~--v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 254 (302)
.+++...|+. |.+.|+.++. .. .+..-.+.-..=.|+||| ...+.+.+..|.-.||-...+.... .++.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~--~~---~Lt~~~gi~~~Ps~spdG---~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT 322 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN--LP---RLTNGFGINTSPSWSPDG---SKIVFTSDRGGRPQIYLYDLEGSQV-TRLT 322 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc--ce---ecccCCccccCccCCCCC---CEEEEEeCCCCCcceEEECCCCCce-eEee
Confidence 5666666776 4455655542 11 122112222245688886 2344455557776777665433221 1222
Q ss_pred ccCCCcEEEEEEccCCCEEEEecCC----ceEEeeecCCceEEEe
Q 022111 255 KDFKTPVWSVSWSLTGNLLAVADAN----NVTLWKEAVDGEWQQV 295 (302)
Q Consensus 255 ~~~~~~v~~~~~spdg~~la~~~~d----~i~~w~~~~~~~~~~~ 295 (302)
....... .-.|||||++|+..+.. .|.+.+....+.|..+
T Consensus 323 ~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 323 FSGGGNS-NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred ccCCCCc-CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 2222222 56799999999888742 2555554433334443
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.70 E-value=1.6 Score=39.63 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=41.9
Q ss_pred EEEccCCCEEEEeeCC----------C-cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 17 VAMDFYGKRLATASSD----------S-SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d----------~-~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
++..|.|--+|..-.+ . .|+||+..+ ..+.++.--.+.|.++.|.. ...|+....||+++++|
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG---~ll~~i~w~~~~iv~~~wt~---~e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG---KLLSSIPWDSGRIVGMGWTD---DEELVVVQSDGTVRVYD 107 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC---CEeEEEEECCCCEEEEEECC---CCeEEEEEcCCEEEEEe
Confidence 3445656555555433 1 488887654 33444332226888999964 35667778999999999
Q ss_pred cCC
Q 022111 86 EGN 88 (302)
Q Consensus 86 ~~~ 88 (302)
+..
T Consensus 108 ~~G 110 (410)
T PF04841_consen 108 LFG 110 (410)
T ss_pred CCC
Confidence 853
No 346
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.63 E-value=0.041 Score=33.00 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=26.5
Q ss_pred CCcEEEEEEccCCCEEEEecCC-ceEEeeec
Q 022111 258 KTPVWSVSWSLTGNLLAVADAN-NVTLWKEA 287 (302)
Q Consensus 258 ~~~v~~~~~spdg~~la~~~~d-~i~~w~~~ 287 (302)
..+|..++|+|..++||.+..+ .|.+++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999988 69999874
No 347
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.44 E-value=1.6 Score=38.02 Aligned_cols=191 Identities=13% Similarity=0.199 Sum_probs=103.3
Q ss_pred CCEEEEeeC----------CCcEEEEeecCC-----CceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 23 GKRLATASS----------DSSIKIIGLSNS-----ASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 23 ~~~l~s~~~----------d~~v~lw~~~~~-----~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
..+++.|.. .|.+.++++... ..+.+.. ....++|++|+-.. +.++++ ....+.+|++.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~~---~~lv~~--~g~~l~v~~l~ 115 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSFN---GRLVVA--VGNKLYVYDLD 115 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEET---TEEEEE--ETTEEEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhhC---CEEEEe--ecCEEEEEEcc
Confidence 357776652 288999998763 1222222 23578899998652 454333 34789999997
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
..........+. ..-.+.++.... .+++.|+..+.+.++....... ..... ....+..++++.+-++
T Consensus 116 ~~~~l~~~~~~~-~~~~i~sl~~~~----~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d~~~~~v~~~~~l~d------ 183 (321)
T PF03178_consen 116 NSKTLLKKAFYD-SPFYITSLSVFK----NYILVGDAMKSVSLLRYDEENNKLILVA-RDYQPRWVTAAEFLVD------ 183 (321)
T ss_dssp TTSSEEEEEEE--BSSSEEEEEEET----TEEEEEESSSSEEEEEEETTTE-EEEEE-EESS-BEEEEEEEE-S------
T ss_pred Ccccchhhheec-ceEEEEEEeccc----cEEEEEEcccCEEEEEEEccCCEEEEEE-ecCCCccEEEEEEecC------
Confidence 654233333333 233677776653 3899999999999886554221 21111 1122344566655432
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecCcc-------ccccccccccCCCceeEE---EeeCC-CCCC---ccEEEEEe
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNGIW-------KMDCFPALQMHSDWVRSV---AWAPN-LGLP---KSTIASAS 232 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~-------~~~~~~~~~~h~~~v~~v---~~~p~-~~~~---~~~l~s~s 232 (302)
+..++.+-.+|++.++....... .+.....+. ..+.|+++ ++.|. .... ...++-++
T Consensus 184 --------~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T 254 (321)
T PF03178_consen 184 --------EDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGT 254 (321)
T ss_dssp --------SSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEE
T ss_pred --------CcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEe
Confidence 24788888999999998863210 111111111 24567877 55552 1100 12488888
Q ss_pred cCCeEEEE
Q 022111 233 QDGTVVIW 240 (302)
Q Consensus 233 ~D~~i~iw 240 (302)
.+|.|-..
T Consensus 255 ~~G~Ig~l 262 (321)
T PF03178_consen 255 VDGSIGVL 262 (321)
T ss_dssp TTS-EEEE
T ss_pred cCCEEEEE
Confidence 99988744
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.31 E-value=2.1 Score=38.57 Aligned_cols=186 Identities=16% Similarity=0.139 Sum_probs=90.2
Q ss_pred EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-----cCCCCeEEEEeCCCCCCCceeeccc
Q 022111 97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-----AHPVGVTSVSWAPAMAPGALVGLGL 171 (302)
Q Consensus 97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~~~~~~~ 171 (302)
-+....++|++++.|.- | .+|.|..+|.+.|.|++...-.....+.. .....++++.|+.....+.-
T Consensus 81 l~~~~~g~vtal~~S~i--G-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~----- 152 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDI--G-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG----- 152 (395)
T ss_dssp EE---S-SEEEEEE-BT--S-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS-----
T ss_pred heeccCCcEeEEecCCC--c-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc-----
Confidence 34455799999999732 4 79999999999999997432111112221 12345788888753211110
Q ss_pred CCCceeEEEeeCCCcEEEEEEec---CccccccccccccCCCceeEEE-eeCCCCC----------------CccEEEEE
Q 022111 172 LDPVQKLASCGCDNTVKVWKMYN---GIWKMDCFPALQMHSDWVRSVA-WAPNLGL----------------PKSTIASA 231 (302)
Q Consensus 172 ~~~~~~l~s~~~D~~v~iwd~~~---~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~----------------~~~~l~s~ 231 (302)
..+-+|+.|...|.+.+|.+.- +.+..........+.+.|..|. ++.+.+. .-..++..
T Consensus 153 -ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVv 231 (395)
T PF08596_consen 153 -YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVV 231 (395)
T ss_dssp -SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEE
T ss_pred -ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEE
Confidence 0124688888899999998852 2233333223335667776665 3333211 01224444
Q ss_pred ecCCeEEEEEeccCCcceeeeeeccCCC--cEEEEEEc-----cCCCEEEEecCC-ceEEeeecCCceEEEee
Q 022111 232 SQDGTVVIWTCAKEGEQWEGRVLKDFKT--PVWSVSWS-----LTGNLLAVADAN-NVTLWKEAVDGEWQQVS 296 (302)
Q Consensus 232 s~D~~i~iwd~~~~~~~~~~~~~~~~~~--~v~~~~~s-----pdg~~la~~~~d-~i~~w~~~~~~~~~~~~ 296 (302)
..+..+|++..-..+. ..+.+.. ...++.+- ..+..|++-..+ .++++-...=++.....
T Consensus 232 vSe~~irv~~~~~~k~-----~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 232 VSESDIRVFKPPKSKG-----AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp E-SSEEEEE-TT---E-----EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred EcccceEEEeCCCCcc-----cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 4567799998754321 1122233 22344442 245566666666 69999876544444433
No 349
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.27 E-value=1.8 Score=37.45 Aligned_cols=251 Identities=14% Similarity=0.215 Sum_probs=106.2
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEee-cCC-CceEEEEecCc---ccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGL-SNS-ASQHLATLKGH---RGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~-~~~-~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
+-...+.+|.|..+.+-++. +..++| +.. +.+ +.+... .... .-...+|.|.. ...++. +..+. .+
T Consensus 14 ~t~~~l~dV~F~d~~~G~~V-G~~g~i--l~T~DGG~tW~~~~-~~~~~~~~~~l~~I~f~~---~~g~iv-G~~g~-ll 84 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAV-GAYGTI--LKTTDGGKTWQPVS-LDLDNPFDYHLNSISFDG---NEGWIV-GEPGL-LL 84 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEE-ETTTEE--EEESSTTSS-EE------S-----EEEEEEEET---TEEEEE-EETTE-EE
T ss_pred CCCCceEEEEEecCCEEEEE-ecCCEE--EEECCCCccccccc-cCCCccceeeEEEEEecC---CceEEE-cCCce-EE
Confidence 44568899999855555555 455654 222 221 122211 1111 11256777753 234444 45554 33
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCC-CeeeeeecccCCCCeEEEEeCCCCC
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG-GWDTTRIDQAHPVGVTSVSWAPAMA 162 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 162 (302)
-....+..|..+..-....+....+....+ +..++. +..+. +|.....+ .|..... .-...+..+.-++
T Consensus 85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~--~~~~l~-~~~G~--iy~T~DgG~tW~~~~~--~~~gs~~~~~r~~--- 154 (302)
T PF14870_consen 85 HTTDGGKTWERVPLSSKLPGSPFGITALGD--GSAELA-GDRGA--IYRTTDGGKTWQAVVS--ETSGSINDITRSS--- 154 (302)
T ss_dssp EESSTTSS-EE----TT-SS-EEEEEEEET--TEEEEE-ETT----EEEESSTTSSEEEEE---S----EEEEEE-T---
T ss_pred EecCCCCCcEEeecCCCCCCCeeEEEEcCC--CcEEEE-cCCCc--EEEeCCCCCCeeEccc--CCcceeEeEEECC---
Confidence 333445566654321112222233333222 223333 34444 45444333 4543221 2223455554444
Q ss_pred CCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 163 PGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 163 ~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
++.+++.++....+.-||--...|.. .-......|.++.|.|++ ...+ ....|.|+.=+.
T Consensus 155 -----------dG~~vavs~~G~~~~s~~~G~~~w~~----~~r~~~~riq~~gf~~~~----~lw~-~~~Gg~~~~s~~ 214 (302)
T PF14870_consen 155 -----------DGRYVAVSSRGNFYSSWDPGQTTWQP----HNRNSSRRIQSMGFSPDG----NLWM-LARGGQIQFSDD 214 (302)
T ss_dssp -----------TS-EEEEETTSSEEEEE-TT-SS-EE----EE--SSS-EEEEEE-TTS-----EEE-EETTTEEEEEE-
T ss_pred -----------CCcEEEEECcccEEEEecCCCccceE----EccCccceehhceecCCC----CEEE-EeCCcEEEEccC
Confidence 34666666555545567643222321 112235679999999985 3333 448888887662
Q ss_pred ccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeecCCce-EEEeeecCC
Q 022111 243 AKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGE-WQQVSVVEP 300 (302)
Q Consensus 243 ~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~-~~~~~~~~~ 300 (302)
......|....... -.-.+..++|.++++..|+|++.+ |+...+.|. |++..+.++
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~--l~~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT--LLVSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT---EEEESSTTSS-EE-GGGTT
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc--EEEeCCCCccceECccccC
Confidence 22222233211111 122488999999999999887663 333434444 999988664
No 350
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.93 E-value=1.6 Score=41.47 Aligned_cols=187 Identities=19% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCEEEEeeCC------CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe-----EEEEEcCCCC
Q 022111 22 YGKRLATASSD------SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ-----VIIWKEGNQN 90 (302)
Q Consensus 22 ~~~~l~s~~~d------~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~-----i~iwd~~~~~ 90 (302)
++...++||.| .++..||........+..+...-... +++.. +|.+.|.|+.||. +-.||..+ +
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l---~g~iYavGG~dg~~~l~svE~YDp~~-~ 406 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL---DGKLYAVGGFDGEKSLNSVECYDPVT-N 406 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE---CCEEEEEeccccccccccEEEecCCC-C
Confidence 46788889988 34666776555444444443222112 22322 3788899998865 55577654 3
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCC------cEEEEEecCCCCeeee-eecccCCCCeEEEEeCCCCCC
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDG------NISVFTATADGGWDTT-RIDQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~------~v~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~ 163 (302)
.|..+............+.+. |.+.+.|+.++ ++..||..+ +.|... .+... ........
T Consensus 407 ~W~~va~m~~~r~~~gv~~~~----g~iYi~GG~~~~~~~l~sve~YDP~t-~~W~~~~~M~~~-R~~~g~a~------- 473 (571)
T KOG4441|consen 407 KWTPVAPMLTRRSGHGVAVLG----GKLYIIGGGDGSSNCLNSVECYDPET-NTWTLIAPMNTR-RSGFGVAV------- 473 (571)
T ss_pred cccccCCCCcceeeeEEEEEC----CEEEEEcCcCCCccccceEEEEcCCC-CceeecCCcccc-cccceEEE-------
Confidence 454433221111122222232 66777777654 344565442 234321 10000 00000000
Q ss_pred CceeecccCCCceeEEEeeCCCc-----EEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCe--
Q 022111 164 GALVGLGLLDPVQKLASCGCDNT-----VKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGT-- 236 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~-----v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~-- 236 (302)
-++..++.||.|+. |..||..+..|..-. ........+..+.+. +...+.|+.|+.
T Consensus 474 ---------~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~--~m~~~rs~~g~~~~~------~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 474 ---------LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA--PMTSPRSAVGVVVLG------GKLYAVGGFDGNNN 536 (571)
T ss_pred ---------ECCEEEEECCccCCCccceEEEEcCCCCceeEcc--cCccccccccEEEEC------CEEEEEecccCccc
Confidence 02467788887763 777998888776432 122222222233322 356778877774
Q ss_pred ---EEEEEec
Q 022111 237 ---VVIWTCA 243 (302)
Q Consensus 237 ---i~iwd~~ 243 (302)
+..||..
T Consensus 537 l~~ve~ydp~ 546 (571)
T KOG4441|consen 537 LNTVECYDPE 546 (571)
T ss_pred cceeEEcCCC
Confidence 5555443
No 351
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.91 E-value=0.86 Score=43.25 Aligned_cols=109 Identities=16% Similarity=0.357 Sum_probs=71.4
Q ss_pred ccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc------CCCCcee
Q 022111 20 DFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE------GNQNDWT 93 (302)
Q Consensus 20 s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~------~~~~~~~ 93 (302)
+.-++..+.-+...++.|||......+.-..+ ...+.|.++.|....+++.+.+.|..+.|.++-- .....|.
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 34455555544556799999876554444445 4467899999977667888889999999999853 1122244
Q ss_pred EEEE--ecCCC-CCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111 94 QAHT--FNDHK-SSVNSIAWAPHELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 94 ~~~~--~~~h~-~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~ 133 (302)
++.. +..|+ .+|.+..|.++ |..++ |+ ++.+.+++-
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~--G~LvV-~s-GNqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKD--GTLVV-GS-GNQLFVFDK 155 (631)
T ss_pred eeEEEEeecCCCCCccceeEecC--CeEEE-Ee-CCEEEEECC
Confidence 4443 33454 78999999987 54433 32 567888753
No 352
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.88 E-value=3.7 Score=39.13 Aligned_cols=211 Identities=17% Similarity=0.219 Sum_probs=98.4
Q ss_pred cCeEEEEeeCCCCCCEEEEEe------CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCc-E
Q 022111 56 GPVWQVAWAHPKFGSILASCS------YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGN-I 128 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s------~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~-v 128 (302)
..+.+.+++++ |+.+|..- .|..-.||-.........+ ..+ .....-.|+|| |..|++.+..+. .
T Consensus 350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g--~~~t~PsWspD--G~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEG--HSLTRPSWSLD--ADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecC--CCCCCceECCC--CCceEEEecCcceE
Confidence 35677788764 67665554 3555566643222211121 122 23677789998 456666654322 2
Q ss_pred EEEEecCCCCeeeeeec-----ccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEE---EEEecCccccc
Q 022111 129 SVFTATADGGWDTTRID-----QAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKV---WKMYNGIWKMD 200 (302)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~i---wd~~~~~~~~~ 200 (302)
++.+....+......+. +.....|..+.|+|++ .+++--. ++.|++ -....+...+.
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG--------------~RiA~i~-~g~v~Va~Vvr~~~G~~~l~ 486 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDG--------------VRAAMII-GGKVYLAVVEQTEDGQYALT 486 (591)
T ss_pred EEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCC--------------CEEEEEE-CCEEEEEEEEeCCCCceeec
Confidence 22221111111111111 0123469999999985 3333322 345555 22222221111
Q ss_pred cccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee-ccCCCcEEEEEEccCCCEEEEecC
Q 022111 201 CFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 201 ~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~ 278 (302)
....+. +-...+.++.|.+++ .|+.+..++.-.+|.+.-.+.... .+. .....++.+|+=+++ -|.++++
T Consensus 487 ~~~~l~~~l~~~~~~l~W~~~~-----~L~V~~~~~~~~v~~v~vDG~~~~-~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 487 NPREVGPGLGDTAVSLDWRTGD-----SLVVGRSDPEHPVWYVNLDGSNSD-ALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred ccEEeecccCCccccceEecCC-----EEEEEecCCCCceEEEecCCcccc-ccCCCCccCceEEEecCCc--eEEEEcC
Confidence 111121 223346789998874 355666666556676543221111 111 112456777776663 3445555
Q ss_pred CceEEeee--cCCceEEEeee
Q 022111 279 NNVTLWKE--AVDGEWQQVSV 297 (302)
Q Consensus 279 d~i~~w~~--~~~~~~~~~~~ 297 (302)
+++..... ..+..|-++.-
T Consensus 559 ~g~~~l~~~~~~~~~W~ev~~ 579 (591)
T PRK13616 559 RAVLQLPNSDSGDQYWREVPG 579 (591)
T ss_pred CceEEecCCCCCCCCceECcc
Confidence 55433332 22334776553
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.86 E-value=0.13 Score=50.56 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHK 102 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~ 102 (302)
+..++.|+..|.+-+.|+... ..+...-..-.++|++++|+. +|.+++.|-.+|.|.+||+..+. ..+.+..|.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~--dg~~l~~G~~~G~V~v~D~~~~k---~l~~i~e~~ 172 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQ--DGSLLLAGLGDGHVTVWDMHRAK---ILKVITEHG 172 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecC--CCceeccccCCCcEEEEEccCCc---ceeeeeecC
Confidence 457888888888888776532 111111112357899999974 58999999999999999997653 556666677
Q ss_pred CCeeEEEecCC-CCCcEEEEEecCCcEEEEEe
Q 022111 103 SSVNSIAWAPH-ELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 103 ~~i~~l~~~pd-~~~~~l~sg~~d~~v~~~~~ 133 (302)
.+...+-+.-- ..+..+.++...|. +|..
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 66666654311 11335777766664 5654
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.73 E-value=0.12 Score=30.92 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=28.1
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeec
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLS 41 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~ 41 (302)
...|..++|+|....||.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3568999999999999999999999999874
No 355
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.40 E-value=4 Score=37.39 Aligned_cols=220 Identities=17% Similarity=0.219 Sum_probs=102.7
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCce
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDW 92 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~ 92 (302)
....+.++|+|++++.+ .||...||.-.. .... . .+.-....|.+. ..+|+-....+|+|+.--+..
T Consensus 34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~--~r~k-~----~G~g~~~vw~~~---n~yAv~~~~~~I~I~kn~~~~-- 100 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALA--WRNK-A----FGSGLSFVWSSR---NRYAVLESSSTIKIYKNFKNE-- 100 (443)
T ss_dssp --SEEEE-TTSSEEEEE-ETTEEEEEETTT--TEEE-E----EEE-SEEEE-TS---SEEEEE-TTS-EEEEETTEE---
T ss_pred CCeeEEECCCCCEEEEE-cCCEEEEEEccC--Cccc-c----cCceeEEEEecC---ccEEEEECCCeEEEEEcCccc--
Confidence 46779999999999885 477888876321 2221 1 122345778752 356777778899997421111
Q ss_pred eEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccC
Q 022111 93 TQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLL 172 (302)
Q Consensus 93 ~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 172 (302)
....+.. ...+..+.- |..|+..+. +.|.+||+.+.. ....+. -.+|..+.|++++
T Consensus 101 -~~k~i~~-~~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~--~i~~i~---v~~vk~V~Ws~~g----------- 156 (443)
T PF04053_consen 101 -VVKSIKL-PFSVEKIFG-----GNLLGVKSS-DFICFYDWETGK--LIRRID---VSAVKYVIWSDDG----------- 156 (443)
T ss_dssp -TT------SS-EEEEE------SSSEEEEET-TEEEEE-TTT----EEEEES---S-E-EEEEE-TTS-----------
T ss_pred -cceEEcC-CcccceEEc-----CcEEEEECC-CCEEEEEhhHcc--eeeEEe---cCCCcEEEEECCC-----------
Confidence 1112221 112344422 445555544 489999987542 223332 2237899999864
Q ss_pred CCceeEEEeeCCCcEEEEEEecCcc------cc-ccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 173 DPVQKLASCGCDNTVKVWKMYNGIW------KM-DCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 173 ~~~~~l~s~~~D~~v~iwd~~~~~~------~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.+++-.+. ..+.|++-+.... -. ..+..+..-...|.+..|..+ .|+=.+.. .|+-+ ..
T Consensus 157 ---~~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d------~fiYtT~~-~lkYl--~~- 222 (443)
T PF04053_consen 157 ---ELVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED------CFIYTTSN-HLKYL--VN- 222 (443)
T ss_dssp ---SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT------EEEEE-TT-EEEEE--ET-
T ss_pred ---CEEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC------EEEEEcCC-eEEEE--Ec-
Confidence 55666654 4688877542100 00 011111111456777777643 34333333 55542 21
Q ss_pred CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC-ceEEeee
Q 022111 246 GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKE 286 (302)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~ 286 (302)
++ .........+++=+.+.|..+.|...+++ ++..+..
T Consensus 223 Ge---~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 223 GE---TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp TE---EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred CC---cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 11 12234445678888888877788788777 6776654
No 356
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.23 E-value=0.2 Score=40.71 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
+..++.|+.+|.|.+|+.... +........-...|.++ +..-.++.+..+++.|+.|+.|.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~-g~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~ 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE-GAHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPN 134 (238)
T ss_pred CceEEeecccceEEEecCCcc-chHHHhhhcccccceec-cccccccceeEEeccCCceeeeccccC
Confidence 467888999999999987421 11110011111122222 222223568889999999999987544
No 357
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.88 E-value=5.6 Score=37.17 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=64.7
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC-----ccccccccccccCCCce--eEEEeeCCC
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG-----IWKMDCFPALQMHSDWV--RSVAWAPNL 221 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-----~~~~~~~~~~~~h~~~v--~~v~~~p~~ 221 (302)
-.-|..+.|.|-...+ .-.|+.....+.|.||.+-.. ++.+....++ +..-+| ..+-|+|..
T Consensus 56 FEhV~GlsW~P~~~~~----------~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi-~e~~pvLpQGCVWHPk~ 124 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTAD----------TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEI-REPFPVLPQGCVWHPKK 124 (671)
T ss_pred cceeeeeeecCcccCC----------CCceEEEeccceEEEEEeccCccccccceeeeeeec-cCCcccCCCcccccCCC
Confidence 3448999999964221 124555667789999998521 1111100010 111112 246799974
Q ss_pred CCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee
Q 022111 222 GLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE 286 (302)
Q Consensus 222 ~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~ 286 (302)
..|+.=.....--+.+++.....-... -...+-|.+..|.+||++|++|-+. .-.+||.
T Consensus 125 ----~iL~VLT~~dvSV~~sV~~d~srVkaD--i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 125 ----AILTVLTARDVSVLPSVHCDSSRVKAD--IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ----ceEEEEecCceeEeeeeeeCCceEEEe--ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 333333322222344554322111111 1234569999999999999888655 4678885
No 358
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.41 E-value=4.9 Score=34.98 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=81.1
Q ss_pred CeEEEEEcCCC----CceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEE
Q 022111 79 GQVIIWKEGNQ----NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTS 154 (302)
Q Consensus 79 ~~i~iwd~~~~----~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~ 154 (302)
|.+.++++... .....+.... .+++|.+++--. +. |+.+ ..+.|.+|++.....+...... .....+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~~---~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSFN---GR-LVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEET---TE-EEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhhC---CE-EEEe-ecCEEEEEEccCcccchhhhee-cceEEEEE
Confidence 88999998763 2233333333 578899987652 44 4433 3589999999865422222111 12234555
Q ss_pred EEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecC
Q 022111 155 VSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQD 234 (302)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D 234 (302)
+... +.+++.|..-..+.++..+.....+..+. -.....++.++.|-+++ +.++.+..+
T Consensus 135 l~~~----------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d~~~~~v~~~~~l~d~----~~~i~~D~~ 193 (321)
T PF03178_consen 135 LSVF----------------KNYILVGDAMKSVSLLRYDEENNKLILVA-RDYQPRWVTAAEFLVDE----DTIIVGDKD 193 (321)
T ss_dssp EEEE----------------TTEEEEEESSSSEEEEEEETTTE-EEEEE-EESS-BEEEEEEEE-SS----SEEEEEETT
T ss_pred Eecc----------------ccEEEEEEcccCEEEEEEEccCCEEEEEE-ecCCCccEEEEEEecCC----cEEEEEcCC
Confidence 5432 24677777777788876654322222221 12345678999998774 589999999
Q ss_pred CeEEEEEecc
Q 022111 235 GTVVIWTCAK 244 (302)
Q Consensus 235 ~~i~iwd~~~ 244 (302)
|.+.++....
T Consensus 194 gnl~~l~~~~ 203 (321)
T PF03178_consen 194 GNLFVLRYNP 203 (321)
T ss_dssp SEEEEEEE-S
T ss_pred CeEEEEEECC
Confidence 9999998863
No 359
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.26 E-value=5.1 Score=38.21 Aligned_cols=107 Identities=10% Similarity=0.180 Sum_probs=59.6
Q ss_pred CcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe--
Q 022111 116 GLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-- 193 (302)
Q Consensus 116 ~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-- 193 (302)
++..+.-+....+.|||..... ......- .....|..+.|.... +++.+++.|....|.+|--.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~------------d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTP------------DGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecC------------CCCEEEEEEcCcEEEEEEccch
Confidence 3333444445688999986432 2221110 235678999997543 45677888888888887531
Q ss_pred -----cCccccccccccccCC-CceeEEEeeCCCCCCccEEEEEecCCeEEEEEe
Q 022111 194 -----NGIWKMDCFPALQMHS-DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC 242 (302)
Q Consensus 194 -----~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~ 242 (302)
.+.|..-....+..|+ .+|.+..|-++| .++.|+ +..+.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-----~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-----TLVVGS-GNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCC-----eEEEEe-CCEEEEECC
Confidence 1112110001122333 569999999986 343333 445777763
No 360
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.02 E-value=0.56 Score=38.17 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=59.3
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
..++.|+.++.|++|.........+.+ ..-...|-+. -|.+. ++....+++.|+.||.|++.-.+.. ....
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~---~s~~e~i~~~--Ip~~~-~~~~~c~~~~dg~ir~~n~~p~k~~---g~~g 141 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRV---CSGEESIDLG--IPNGR-DSSLGCVGAQDGRIRACNIKPNKVL---GYVG 141 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhh---hcccccceec--ccccc-ccceeEEeccCCceeeeccccCcee---eeec
Confidence 568899999999999875211111111 1112223332 23331 2457889999999999998643211 1112
Q ss_pred cCC-CcEEEEEEccCCCEEEEe--cCC-ceEEeeec
Q 022111 256 DFK-TPVWSVSWSLTGNLLAVA--DAN-NVTLWKEA 287 (302)
Q Consensus 256 ~~~-~~v~~~~~spdg~~la~~--~~d-~i~~w~~~ 287 (302)
.|. .++....-+..++.|+.+ +.+ .++.|++.
T Consensus 142 ~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 142 QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333 344445555566777777 666 67888764
No 361
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=4.2 Score=37.45 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred EEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEE-----EEEeCCCeEEEEEcCCCCc----eeEEE
Q 022111 26 LATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSIL-----ASCSYDGQVIIWKEGNQND----WTQAH 96 (302)
Q Consensus 26 l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~s~D~~i~iwd~~~~~~----~~~~~ 96 (302)
|.++..-..++-.|++. ++.+..-+-|.. |.-+.+.|+..+..| +.|-.|..|.-||++-... +...+
T Consensus 349 l~~~~~~~~l~klDIE~--GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIER--GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eeCCCCcCcceeeeccc--ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 34444445555556654 455555555554 555566554333222 3556688889999864332 22222
Q ss_pred EecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCce
Q 022111 97 TFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQ 176 (302)
Q Consensus 97 ~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 176 (302)
.+.. .....|.+-.- +| +++.||.+|.|+|||.. +.. ....+. +-..+|..+.-+.+ |+
T Consensus 426 qy~~-k~nFsc~aTT~--sG-~IvvgS~~GdIRLYdri-~~~-AKTAlP-gLG~~I~hVdvtad--------------GK 484 (644)
T KOG2395|consen 426 QYST-KNNFSCFATTE--SG-YIVVGSLKGDIRLYDRI-GRR-AKTALP-GLGDAIKHVDVTAD--------------GK 484 (644)
T ss_pred cccc-ccccceeeecC--Cc-eEEEeecCCcEEeehhh-hhh-hhhccc-ccCCceeeEEeecc--------------Cc
Confidence 2321 12334444332 34 69999999999999863 111 111121 34456766654433 33
Q ss_pred eEEEeeCCCcEEEEEEe
Q 022111 177 KLASCGCDNTVKVWKMY 193 (302)
Q Consensus 177 ~l~s~~~D~~v~iwd~~ 193 (302)
. +-|.++.++-|.++.
T Consensus 485 w-il~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 485 W-ILATCKTYLLLIDTL 500 (644)
T ss_pred E-EEEecccEEEEEEEe
Confidence 3 345557788888864
No 362
>PHA03098 kelch-like protein; Provisional
Probab=92.90 E-value=8.3 Score=36.23 Aligned_cols=69 Identities=13% Similarity=0.130 Sum_probs=33.3
Q ss_pred CCCEEEEeeCCC------cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC-----CeEEEEEcCCCC
Q 022111 22 YGKRLATASSDS------SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD-----GQVIIWKEGNQN 90 (302)
Q Consensus 22 ~~~~l~s~~~d~------~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D-----~~i~iwd~~~~~ 90 (302)
++..++.||.++ .+..||........+..+.........+.+ ++++++.||.+ ..+..||+.+ +
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~~-~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPGE-S 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCCC-C
Confidence 455666776543 355666654433332222211111112222 25777778765 3466677754 3
Q ss_pred ceeEE
Q 022111 91 DWTQA 95 (302)
Q Consensus 91 ~~~~~ 95 (302)
.|...
T Consensus 369 ~W~~~ 373 (534)
T PHA03098 369 KWREE 373 (534)
T ss_pred ceeeC
Confidence 45443
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=3.2 Score=38.13 Aligned_cols=98 Identities=12% Similarity=0.040 Sum_probs=61.2
Q ss_pred EEeeCCCcEEEEEEecCccccccccccccCC----CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeee
Q 022111 179 ASCGCDNTVKVWKMYNGIWKMDCFPALQMHS----DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL 254 (302)
Q Consensus 179 ~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~----~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~ 254 (302)
+.|-.|+.|.-||++-.... .+..-.+|. ..-.|.+-..+ .+||.||.+|-||+||.-...+ ...+
T Consensus 398 lvGLs~n~vfriDpRv~~~~--kl~~~q~kqy~~k~nFsc~aTT~s-----G~IvvgS~~GdIRLYdri~~~A---KTAl 467 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKN--KLAVVQSKQYSTKNNFSCFATTES-----GYIVVGSLKGDIRLYDRIGRRA---KTAL 467 (644)
T ss_pred EEeecCCceEEecccccCcc--eeeeeeccccccccccceeeecCC-----ceEEEeecCCcEEeehhhhhhh---hhcc
Confidence 34556788999998732210 011111111 11233333333 5799999999999999633211 2345
Q ss_pred ccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 255 KDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 255 ~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
.+.+.+|.-|.-+.||+.|++....-+.|=+.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 67788999999999999998887765555443
No 364
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=0.54 Score=46.39 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=64.4
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
..++.|+.-|.+-..|+..+. .....=....++|++++|+.++ ..++.|=.+|.|.+||+...+. .....
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL---~~~~~ne~v~~~Vtsvafn~dg----~~l~~G~~~G~V~v~D~~~~k~---l~~i~ 169 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL---GPLHQNERVQGPVTSVAFNQDG----SLLLAGLGDGHVTVWDMHRAKI---LKVIT 169 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc---chhhcCCccCCcceeeEecCCC----ceeccccCCCcEEEEEccCCcc---eeeee
Confidence 467888888888888887542 1111111235789999999885 7888999999999999976432 12334
Q ss_pred cCCCcEEE---EEEccCCCEEEEecCCceEEeeecCCc
Q 022111 256 DFKTPVWS---VSWSLTGNLLAVADANNVTLWKEAVDG 290 (302)
Q Consensus 256 ~~~~~v~~---~~~spdg~~la~~~~d~i~~w~~~~~~ 290 (302)
.+..+..+ +.+.-++..+.+++..+. +|+..-+.
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs-f~~lv~nk 206 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS-FWKLVFNK 206 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc-eEEEEech
Confidence 44444333 333344555666644433 67654444
No 365
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=92.28 E-value=8.2 Score=34.67 Aligned_cols=94 Identities=11% Similarity=0.084 Sum_probs=49.6
Q ss_pred eeEEEeeCCCcEEEEEEecCc--cccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee
Q 022111 176 QKLASCGCDNTVKVWKMYNGI--WKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV 253 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 253 (302)
..+..++.++.+..+|..++. |.... +. +. ...+.... +..|..++.||.|.+.|..+....|...+
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~-~~-~~~sp~v~------~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSD---LL-HR-LLTAPVLY------NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccc---cC-CC-cccCCEEE------CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 567777789999999987763 22111 10 10 01111111 25688899999999999876433332222
Q ss_pred eccCCCcEEE-EEEccCCCEEEEecCC-ceEEee
Q 022111 254 LKDFKTPVWS-VSWSLTGNLLAVADAN-NVTLWK 285 (302)
Q Consensus 254 ~~~~~~~v~~-~~~spdg~~la~~~~d-~i~~w~ 285 (302)
. ...+.+ -.+ .++ .|.+++.+ .+..++
T Consensus 364 ~---~~~~~s~P~~-~~~-~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 364 D---SSGFLSEPVV-ADD-KLLIQARDGTVYAIT 392 (394)
T ss_pred C---CCcceeCCEE-ECC-EEEEEeCCceEEEEe
Confidence 1 112222 111 244 55556566 566654
No 366
>PHA02790 Kelch-like protein; Provisional
Probab=92.12 E-value=10 Score=35.28 Aligned_cols=104 Identities=7% Similarity=0.041 Sum_probs=50.1
Q ss_pred CCCEEEEeeCCC-----cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC--CeEEEEEcCCCCceeE
Q 022111 22 YGKRLATASSDS-----SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD--GQVIIWKEGNQNDWTQ 94 (302)
Q Consensus 22 ~~~~l~s~~~d~-----~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~ 94 (302)
++..++.||.++ ++..||........+..+.........+.. ++.+.+.|+.+ .++..||... +.|..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~-n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGD-AAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCC-CeEEE
Confidence 455667787653 466677655433333333221111112222 26777777754 3577788654 34554
Q ss_pred EEEecCCCCCeeEEEecCCCCCcEEEEEecCC---cEEEEEec
Q 022111 95 AHTFNDHKSSVNSIAWAPHELGLSLACGSSDG---NISVFTAT 134 (302)
Q Consensus 95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~---~v~~~~~~ 134 (302)
+..+.........+.+ + +.+.+.|+.++ .+..||..
T Consensus 346 ~~~l~~~r~~~~~~~~--~--g~IYviGG~~~~~~~ve~ydp~ 384 (480)
T PHA02790 346 MPSLLKPRCNPAVASI--N--NVIYVIGGHSETDTTTEYLLPN 384 (480)
T ss_pred CCCCCCCCcccEEEEE--C--CEEEEecCcCCCCccEEEEeCC
Confidence 4333211111122222 2 45666666543 45667654
No 367
>PHA02790 Kelch-like protein; Provisional
Probab=92.09 E-value=6.4 Score=36.52 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=51.3
Q ss_pred cCCCEEEEeeCC--CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCC---eEEEEEcCCCCceeEE
Q 022111 21 FYGKRLATASSD--SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDG---QVIIWKEGNQNDWTQA 95 (302)
Q Consensus 21 ~~~~~l~s~~~d--~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~---~i~iwd~~~~~~~~~~ 95 (302)
.+++..+.||.+ ..+..|+........+..+...-... +++.. +|++.+.||.++ .+..||+++ +.|...
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~---~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~ 391 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASI---NNVIYVIGGHSETDTTTEYLLPNH-DQWQFG 391 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEE---CCEEEEecCcCCCCccEEEEeCCC-CEEEeC
Confidence 356777777754 34667775443333333332111111 22222 267778887653 467788765 346543
Q ss_pred EEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee
Q 022111 96 HTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 140 (302)
Q Consensus 96 ~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~ 140 (302)
............+.+ + +.+.+.| |.+..||..+ ..|.
T Consensus 392 ~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~-~~W~ 428 (480)
T PHA02790 392 PSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESS-NTWT 428 (480)
T ss_pred CCCCCccccceEEEE--C--CEEEEEC---CceEEecCCC-CcEe
Confidence 222211111122223 2 4455555 3467787653 3454
No 368
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.85 E-value=0.63 Score=27.15 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=25.7
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
.|+++.|+|+... ...|+-.-.-+.+.|+|++.
T Consensus 2 AvR~~kFsP~~~~-~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGG-NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCc-ccEEEEEccCCeEEEEEccc
Confidence 5889999987522 25777777788999999985
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.80 E-value=7 Score=32.84 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=76.4
Q ss_pred CeeEEEecCCCCCcEEEEEe-cCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEee
Q 022111 104 SVNSIAWAPHELGLSLACGS-SDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCG 182 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 182 (302)
.+.+.+++++ +..+|... .++.-.||-...++...... ....++...|++++ ...+...
T Consensus 25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~~~~~~~~----~g~~l~~PS~d~~g--------------~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAGGPVRPVL----TGGSLTRPSWDPDG--------------WVWTVDD 84 (253)
T ss_pred cccceEECCC--CCeEEEEEEcCCCCEEEEEcCCCcceeec----cCCccccccccCCC--------------CEEEEEc
Confidence 6788999998 44554443 34444455444333222111 11246677787753 3333333
Q ss_pred CCCcEEEEE-EecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEe---cCCeEEEEEeccCCcc--e-e---ee
Q 022111 183 CDNTVKVWK-MYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASAS---QDGTVVIWTCAKEGEQ--W-E---GR 252 (302)
Q Consensus 183 ~D~~v~iwd-~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s---~D~~i~iwd~~~~~~~--~-~---~~ 252 (302)
.+...+++. ..++......+.... -...|.++.+|||+ ..+|-.. .++.|.+=-+...... . . ..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~-~~~~I~~l~vSpDG----~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPG-LRGRITALRVSPDG----TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccc-cCCceEEEEECCCC----cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 444455553 222211100011111 11179999999997 4444443 4566666554332111 0 0 01
Q ss_pred eeccCCCcEEEEEEccCCCEEEEecCC
Q 022111 253 VLKDFKTPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 253 ~~~~~~~~v~~~~~spdg~~la~~~~d 279 (302)
+.......+.+++|.+++.+++.+...
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCCC
Confidence 111224578899999999888777554
No 370
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=91.78 E-value=9.4 Score=34.29 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=90.5
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEE-EEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQ-VAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDH 101 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 101 (302)
+..++.++.++.++-+|..++. .+-+.... +.+.+ .... +.+++.+..++.+.-+|.+++.. +..+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~-~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~ 189 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE--VAWQTKVA-GEALSRPVVS----DGLVLVHTSNGMLQALNESDGAV---KWTVNLD 189 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC--CcccccCC-CceecCCEEE----CCEEEEECCCCEEEEEEccCCCE---eeeecCC
Confidence 3456667778888887765432 22222211 11211 1111 24566677888999999877642 2222211
Q ss_pred CCCeeEE--EecCCCCCcEEEEEecCCcEEEEEecCCCC-eeeeeecccCC-CCe---EEEEeCCCCCCCceeecccCCC
Q 022111 102 KSSVNSI--AWAPHELGLSLACGSSDGNISVFTATADGG-WDTTRIDQAHP-VGV---TSVSWAPAMAPGALVGLGLLDP 174 (302)
Q Consensus 102 ~~~i~~l--~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~-~~~~~~~~~h~-~~v---~~~~~~~~~~~~~~~~~~~~~~ 174 (302)
. +...+ .-+|--.+..++.++.++.+..++..++.. |.. .+..... ..+ ..+.-+|. ..
T Consensus 190 ~-~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~-----------v~- 255 (394)
T PRK11138 190 V-PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPV-----------VV- 255 (394)
T ss_pred C-CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcE-----------EE-
Confidence 1 10000 001210012466677788887777654321 211 1100000 000 00000110 01
Q ss_pred ceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCccee
Q 022111 175 VQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWE 250 (302)
Q Consensus 175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~ 250 (302)
+..++.++.++.+..+|+.++....+. .+.. ...+... +..|..++.|+.+...|..+....|.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~--~~~~----~~~~~~~------~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR--EYGS----VNDFAVD------GGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee--cCCC----ccCcEEE------CCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 245666777899999998877421110 1110 1111111 35677788899999999876544453
No 371
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.54 E-value=0.76 Score=26.82 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.1
Q ss_pred cCeEEEEeeCCCCC--CEEEEEeCCCeEEEEEcCC
Q 022111 56 GPVWQVAWAHPKFG--SILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 56 ~~v~~v~~~~~~~~--~~l~s~s~D~~i~iwd~~~ 88 (302)
+.|++++|+|.. + ++|+-.-.-+.+.|+|+++
T Consensus 1 GAvR~~kFsP~~-~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEP-GGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCC-CcccEEEEEccCCeEEEEEccc
Confidence 468999998643 4 7888888889999999874
No 372
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.09 E-value=12 Score=34.15 Aligned_cols=205 Identities=18% Similarity=0.208 Sum_probs=95.7
Q ss_pred CeEEEEeeCCCCCCEEEEE---eCC-CeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEE
Q 022111 57 PVWQVAWAHPKFGSILASC---SYD-GQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT 132 (302)
Q Consensus 57 ~v~~v~~~~~~~~~~l~s~---s~D-~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~ 132 (302)
.+..-+|+++ +..++-. ... ..+.+++++.+.. ..+..+.+++ ..-+|+||. .+++.+...|+...+|-
T Consensus 194 ~~~~p~ws~~--~~~~~y~~f~~~~~~~i~~~~l~~g~~-~~i~~~~g~~---~~P~fspDG-~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 194 LILTPAWSPD--GKKLAYVSFELGGCPRIYYLDLNTGKR-PVILNFNGNN---GAPAFSPDG-SKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ceeccccCcC--CCceEEEEEecCCCceEEEEeccCCcc-ceeeccCCcc---CCccCCCCC-CEEEEEECCCCCccEEE
Confidence 3444566654 4443333 222 3578888876543 2233344443 455699994 24455666677766664
Q ss_pred ecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCce
Q 022111 133 ATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWV 212 (302)
Q Consensus 133 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v 212 (302)
..-.+.. ...+... ...-+.-.|+|++ ...+++....|.-.||-+.-...... ..++.+-...
T Consensus 267 ~dl~~~~-~~~Lt~~-~gi~~~Ps~spdG-------------~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~~~~~~- 329 (425)
T COG0823 267 MDLDGKN-LPRLTNG-FGINTSPSWSPDG-------------SKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFSGGGNS- 329 (425)
T ss_pred EcCCCCc-ceecccC-CccccCccCCCCC-------------CEEEEEeCCCCCcceEEECCCCCcee-EeeccCCCCc-
Confidence 4322221 2222211 1112356677765 24445555566656655432211111 1122222222
Q ss_pred eEEEeeCCCCCCccEEEEEec-CCe--EEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeeec
Q 022111 213 RSVAWAPNLGLPKSTIASASQ-DGT--VVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKEA 287 (302)
Q Consensus 213 ~~v~~~p~~~~~~~~l~s~s~-D~~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~~ 287 (302)
.-.|+||+ +.|+..+. +|. |.+.|+..... + +.+ ........-+|.|+|+.+...+.. .=.++-..
T Consensus 330 -~p~~SpdG----~~i~~~~~~~g~~~i~~~~~~~~~~-~--~~l-t~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s 400 (425)
T COG0823 330 -NPVWSPDG----DKIVFESSSGGQWDIDKNDLASGGK-I--RIL-TSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS 400 (425)
T ss_pred -CccCCCCC----CEEEEEeccCCceeeEEeccCCCCc-E--EEc-cccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence 56788886 55665553 344 33333332211 1 111 111122344677777777655443 23444444
Q ss_pred CCceEEE
Q 022111 288 VDGEWQQ 294 (302)
Q Consensus 288 ~~~~~~~ 294 (302)
..+++..
T Consensus 401 ~~g~~~~ 407 (425)
T COG0823 401 LDGRVSR 407 (425)
T ss_pred ccceeEE
Confidence 4555443
No 373
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=90.96 E-value=0.92 Score=43.69 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=55.7
Q ss_pred CCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111 208 HSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA 287 (302)
Q Consensus 208 h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~ 287 (302)
...+|++.++..| ++-++.||.+.++...+....+..+.+.++...|+.+.++-.|=+++.++++.++++...
T Consensus 625 g~lPvrsla~~ed-------~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhte 697 (925)
T KOG3522|consen 625 GSLPVRSLAFQED-------FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTE 697 (925)
T ss_pred CCccccchhhhhc-------eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccc
Confidence 3456888887755 778889999999988765444544455566678999999888888899988888888543
No 374
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.89 E-value=8.8 Score=32.26 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=73.6
Q ss_pred ceeEEEEccCCCEEEEee-CCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE-cCCCC
Q 022111 13 TVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK-EGNQN 90 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd-~~~~~ 90 (302)
.+.+.+++++++.+|... .++.-.||-..... .....+.+. .+..-+|.++ +.+.+....+...+++. ..+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g~--~l~~PS~d~~--g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTGG--SLTRPSWDPD--GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-cceeeccCC--ccccccccCC--CCEEEEEcCCCceEEEEecCCCc
Confidence 577889999998776655 23333444332221 111122332 5666778653 66665555666666663 22221
Q ss_pred ceeEEEE-ecCCCCCeeEEEecCCCCCcEEEEEe---cCCcEEEEEecCC--C-Ceee---eeecccCCCCeEEEEeCCC
Q 022111 91 DWTQAHT-FNDHKSSVNSIAWAPHELGLSLACGS---SDGNISVFTATAD--G-GWDT---TRIDQAHPVGVTSVSWAPA 160 (302)
Q Consensus 91 ~~~~~~~-~~~h~~~i~~l~~~pd~~~~~l~sg~---~d~~v~~~~~~~~--~-~~~~---~~~~~~h~~~v~~~~~~~~ 160 (302)
...... ...-...|..+++||| |.++|.-. .++.|.+--+..+ + ...+ ..+.......++.+.|.++
T Consensus 100 -~~~~~v~~~~~~~~I~~l~vSpD--G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 100 -GEPVEVDWPGLRGRITALRVSPD--GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred -ceeEEecccccCCceEEEEECCC--CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 112211 1111128999999999 66666554 3567776554322 1 1111 1111122356889999875
Q ss_pred C
Q 022111 161 M 161 (302)
Q Consensus 161 ~ 161 (302)
.
T Consensus 177 ~ 177 (253)
T PF10647_consen 177 S 177 (253)
T ss_pred C
Confidence 3
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.81 E-value=11 Score=33.31 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=56.8
Q ss_pred ccCCCEEEEe---------eCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 20 DFYGKRLATA---------SSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 20 s~~~~~l~s~---------~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
|||+++++.. +..+.+.|||+.+... ..+......+....|+|+ |+.+|-+. ++.|-+.+..++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEE---EESS-EETTBSEEEE-SS--STEEEEEE-TTEEEEESSTTSE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCce---EECcCCccccccceeecC--CCeeEEEe-cCceEEEECCCCC
Confidence 5777777653 2345688888876432 333333567788999875 78887765 5678888765442
Q ss_pred ceeEEEEecC-------C---------CCCeeEEEecCCCCCcEEEEEe-cCCcEEEEEe
Q 022111 91 DWTQAHTFND-------H---------KSSVNSIAWAPHELGLSLACGS-SDGNISVFTA 133 (302)
Q Consensus 91 ~~~~~~~~~~-------h---------~~~i~~l~~~pd~~~~~l~sg~-~d~~v~~~~~ 133 (302)
. ..+ +..+ - -+.-..+-|||| +..||... ++..|+.+.+
T Consensus 75 ~-~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd--~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 75 E-TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPD--SKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp E-EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TT--SSEEEEEEEE-TTS-EEEE
T ss_pred e-EEe-ccccceeEEcCccceeccccccccccceEECCC--CCEEEEEEECCcCCceEEe
Confidence 1 111 1111 0 123367889999 55666554 4455655543
No 376
>PHA03098 kelch-like protein; Provisional
Probab=90.63 E-value=9.6 Score=35.82 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=34.5
Q ss_pred CCCEEEEeeCC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC------CeEEEEEcCCCC
Q 022111 22 YGKRLATASSD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD------GQVIIWKEGNQN 90 (302)
Q Consensus 22 ~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D------~~i~iwd~~~~~ 90 (302)
+++..+.||.+ ..+..||...........+...... .+++.. ++++++.||.+ ..+..||+.+ +
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t-~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVNV---NNLIYVIGGISKNDELLKTVECFSLNT-N 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEEE---CCEEEEECCcCCCCcccceEEEEeCCC-C
Confidence 46677777765 2366677655443333222111101 112221 25777777732 3577888765 3
Q ss_pred ceeEE
Q 022111 91 DWTQA 95 (302)
Q Consensus 91 ~~~~~ 95 (302)
.|...
T Consensus 417 ~W~~~ 421 (534)
T PHA03098 417 KWSKG 421 (534)
T ss_pred eeeec
Confidence 45543
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.61 E-value=2.8 Score=42.02 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=83.9
Q ss_pred CeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCee--------eeeecccCCCCeEEEEeCCCCCCCceeecccCCCc
Q 022111 104 SVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD--------TTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPV 175 (302)
Q Consensus 104 ~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 175 (302)
+|..+...+|..-..+...+.+-.|..||+++-.... .............++.|+|...
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp------------- 168 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP------------- 168 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-------------
Confidence 4555555666322234444445578889986421111 0111111122356778888542
Q ss_pred eeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec
Q 022111 176 QKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK 255 (302)
Q Consensus 176 ~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~ 255 (302)
...+.+..|+.|++..+...... ... -.....++|++|+|.| .+++.|-..|++.-|...-+-.........
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~---v~s-~p~t~~~Tav~WSprG----KQl~iG~nnGt~vQy~P~leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQN---VTS-FPVTNSQTAVLWSPRG----KQLFIGRNNGTEVQYEPSLEIKSEIPEPPV 240 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhh---hcc-cCcccceeeEEecccc----ceeeEecCCCeEEEeecccceeecccCCCc
Confidence 34677778888888776532111 111 1234557999999985 789999999999888654220000000001
Q ss_pred cCCCcEEEEEEccCCCEEEEe
Q 022111 256 DFKTPVWSVSWSLTGNLLAVA 276 (302)
Q Consensus 256 ~~~~~v~~~~~spdg~~la~~ 276 (302)
.....|.+|.|-....+|++-
T Consensus 241 ~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred CCCcceeEEEEecceeEEEEe
Confidence 113468889997766666554
No 378
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.68 E-value=2.5 Score=34.74 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=49.5
Q ss_pred ccEEEEEecCCeEEEEEeccCCcceee----eeec-------cCCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111 225 KSTIASASQDGTVVIWTCAKEGEQWEG----RVLK-------DFKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293 (302)
Q Consensus 225 ~~~l~s~s~D~~i~iwd~~~~~~~~~~----~~~~-------~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~ 293 (302)
+.++++.+.+|.+++||+...+..... .++. .....|.++..+.+|.-|++-+......|+.. .+.|.
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~-L~~W~ 100 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD-LGCWI 100 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc-cceeE
Confidence 367999999999999999875322211 0111 23356888999999988777655578888853 67787
Q ss_pred Eee
Q 022111 294 QVS 296 (302)
Q Consensus 294 ~~~ 296 (302)
++.
T Consensus 101 ~vs 103 (219)
T PF07569_consen 101 RVS 103 (219)
T ss_pred Eec
Confidence 754
No 379
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.57 E-value=4 Score=32.07 Aligned_cols=39 Identities=41% Similarity=0.697 Sum_probs=29.7
Q ss_pred cEEEEEEccCC------CEEEEecCC-ceEEeeecC--CceEEEeeec
Q 022111 260 PVWSVSWSLTG------NLLAVADAN-NVTLWKEAV--DGEWQQVSVV 298 (302)
Q Consensus 260 ~v~~~~~spdg------~~la~~~~d-~i~~w~~~~--~~~~~~~~~~ 298 (302)
.+.+++|||.| .+||+-..+ .|.||.... -+.|.+...+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dv 134 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADV 134 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeeh
Confidence 57899999965 577777777 799998755 5778876554
No 380
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.41 E-value=1.4 Score=43.08 Aligned_cols=183 Identities=16% Similarity=0.184 Sum_probs=96.0
Q ss_pred ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC--CC--ceeEEEEecCCCCCeeEEEecCCCC-CcEEEEEecC
Q 022111 51 LKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN--QN--DWTQAHTFNDHKSSVNSIAWAPHEL-GLSLACGSSD 125 (302)
Q Consensus 51 ~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~--~~--~~~~~~~~~~h~~~i~~l~~~pd~~-~~~l~sg~~d 125 (302)
++|-.+.|-.++|.+-+..+.. -.=|.+.+||+.- ++ .--.++........+.-+.|+|-.. ..++..+-.+
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HhcCCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 3456677888888654322222 2235678898632 11 0012222233334446667776421 2356677777
Q ss_pred CcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEe-cCccccccccc
Q 022111 126 GNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMY-NGIWKMDCFPA 204 (302)
Q Consensus 126 ~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~-~~~~~~~~~~~ 204 (302)
+.+++-...... . ..+. +|...+..+++...+ -+.--.++++|+.||....||.+++|.+. ++.....|+..
T Consensus 205 ~~i~lL~~~ra~-~--~l~r-sHs~~~~d~a~~~~g---~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhe 277 (1283)
T KOG1916|consen 205 GEIRLLNINRAL-R--SLFR-SHSQRVTDMAFFAEG---VLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHE 277 (1283)
T ss_pred CceeEeeechHH-H--HHHH-hcCCCcccHHHHhhc---hhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhc
Confidence 888875433211 1 1222 476665555443221 11111245678999999999999999874 33333456666
Q ss_pred cccCC-CceeEEEeeCCCCC--C---ccEEEEEe-cCCeEEEEEec
Q 022111 205 LQMHS-DWVRSVAWAPNLGL--P---KSTIASAS-QDGTVVIWTCA 243 (302)
Q Consensus 205 ~~~h~-~~v~~v~~~p~~~~--~---~~~l~s~s-~D~~i~iwd~~ 243 (302)
.+.|. .+--|.-|+.+... + -.++++++ .++.+++|...
T Consensus 278 wkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 278 WKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred cCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 66676 33333333322110 0 12345554 46678888754
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.20 E-value=20 Score=33.77 Aligned_cols=156 Identities=15% Similarity=0.238 Sum_probs=79.3
Q ss_pred ccCeEEEEeeCCCCCCEEE-EEe--CCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC--CcEEEEEecCCcEE
Q 022111 55 RGPVWQVAWAHPKFGSILA-SCS--YDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL--GLSLACGSSDGNIS 129 (302)
Q Consensus 55 ~~~v~~v~~~~~~~~~~l~-s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~--~~~l~sg~~d~~v~ 129 (302)
-.+|..++|- ||+.++ |.- .+|.+++=|. .-+. .-+.|..+.|.|-.. .-.|.+.--.+.|.
T Consensus 19 iHPvhGlaWT---DGkqVvLT~L~l~~gE~kfGds------~viG----qFEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 19 IHPVHGLAWT---DGKQVVLTDLQLHNGEPKFGDS------KVIG----QFEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred hccccceEec---CCCEEEEEeeeeeCCccccCCc------cEee----ccceeeeeeecCcccCCCCceEEEeccceEE
Confidence 3468889994 477644 332 2333333211 1222 334589999988521 11466667789999
Q ss_pred EEEecCCC----Ceeee---eecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc
Q 022111 130 VFTATADG----GWDTT---RIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF 202 (302)
Q Consensus 130 ~~~~~~~~----~~~~~---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~ 202 (302)
+|.+.... ++... ++....+.--..+.|.|.. ..|+.=.....-.+++++.....++
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--------------~iL~VLT~~dvSV~~sV~~d~srVk-- 149 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--------------AILTVLTARDVSVLPSVHCDSSRVK-- 149 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--------------ceEEEEecCceeEeeeeeeCCceEE--
Confidence 99886321 22211 1111111112456788853 2222222222223344432211111
Q ss_pred cccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 203 PALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 203 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
..+ .-.+.|.|.+|.+|| .+.+++.+..=.-+|||-.
T Consensus 150 aDi-~~~G~IhCACWT~DG---~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 150 ADI-KTSGLIHCACWTKDG---QRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred Eec-cCCceEEEEEecCcC---CEEEEEeCCeEEEEEecCc
Confidence 111 235669999999997 2455555555567889853
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=89.19 E-value=12 Score=31.44 Aligned_cols=148 Identities=19% Similarity=0.222 Sum_probs=78.8
Q ss_pred CCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEec
Q 022111 115 LGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYN 194 (302)
Q Consensus 115 ~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~ 194 (302)
.+..|+.|..+| +.+|+....... ... .+...|..+...|.- +.|+.- .|+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~--~~i--~~~~~I~ql~vl~~~--------------~~llvL-sd~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKP--TRI--LKLSSITQLSVLPEL--------------NLLLVL-SDGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccc--eeE--eecceEEEEEEeccc--------------CEEEEE-cCCccEEEEchh
Confidence 356899998888 888887322111 111 122337777665532 233333 359999999865
Q ss_pred Ccccccccc----------ccccCCCceeEEE-eeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec--cCCCcE
Q 022111 195 GIWKMDCFP----------ALQMHSDWVRSVA-WAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK--DFKTPV 261 (302)
Q Consensus 195 ~~~~~~~~~----------~~~~h~~~v~~v~-~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--~~~~~v 261 (302)
-........ ........+...+ -... .+...+.....+.|.+|.......... ...+ .....+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~---~~~~~L~va~kk~i~i~~~~~~~~~f~-~~~ke~~lp~~~ 141 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGH---EGSRRLCVAVKKKILIYEWNDPRNSFS-KLLKEISLPDPP 141 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeecccc---ccceEEEEEECCEEEEEEEECCccccc-ceeEEEEcCCCc
Confidence 321110000 0001112233333 1111 134455566667999999876321110 1112 234678
Q ss_pred EEEEEccCCCEEEEecCCceEEeeecC
Q 022111 262 WSVSWSLTGNLLAVADANNVTLWKEAV 288 (302)
Q Consensus 262 ~~~~~spdg~~la~~~~d~i~~w~~~~ 288 (302)
.+++|. ++.|++|.++...+.+...
T Consensus 142 ~~i~~~--~~~i~v~~~~~f~~idl~~ 166 (275)
T PF00780_consen 142 SSIAFL--GNKICVGTSKGFYLIDLNT 166 (275)
T ss_pred EEEEEe--CCEEEEEeCCceEEEecCC
Confidence 899998 5678888777788888763
No 383
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.96 E-value=5.1 Score=36.27 Aligned_cols=114 Identities=12% Similarity=0.215 Sum_probs=70.1
Q ss_pred cccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCce--EEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcC
Q 022111 10 HEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 10 h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~ 87 (302)
.+++|.++.||+|++.||.-=.|.+|..++......+ ...+.+..+..|...+|++ +.-+|..+..| +-+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~---s~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS---STEIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec---CeeEEEEecCC-eEEEEEc
Confidence 4568999999999999999999999999988432211 1223334455688889975 34455555443 5566442
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~ 129 (302)
...+ .+...+.|+..|+=..|+|+..-.+|+++-..+++.
T Consensus 141 pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~ln 180 (657)
T KOG2377|consen 141 PEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLN 180 (657)
T ss_pred hhhh--hhhhhhhcccCccEEEEccccceEeeeccccccccc
Confidence 2211 222233477888888899875322344442444433
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.59 E-value=9.7 Score=34.50 Aligned_cols=103 Identities=10% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCE-EEEEeCCCeEEEEEcCCCCceeEEEEecCC------
Q 022111 31 SDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSI-LASCSYDGQVIIWKEGNQNDWTQAHTFNDH------ 101 (302)
Q Consensus 31 ~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h------ 101 (302)
...++.+||+... +.++++ ........-|+|.++....+ ++.|.-..+|-.|--.....|...+.+.--
T Consensus 220 yG~~l~vWD~~~r--~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 220 YGHSLHVWDWSTR--KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp S--EEEEEETTTT--EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred ccCeEEEEECCCC--cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 5677999999764 444444 32223456889987544444 444444444444432233345433322110
Q ss_pred -------------CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC
Q 022111 102 -------------KSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD 136 (302)
Q Consensus 102 -------------~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~ 136 (302)
..-|+.+..|.|+. .+.+++-..|.++.||++..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDr-fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDR-FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS--EEEEEETTTTEEEEEE-SST
T ss_pred ccccccccccccCCCceEeEEEccCCC-EEEEEcccCCcEEEEecCCC
Confidence 24578999999854 35667778999999999754
No 385
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.28 E-value=4.4 Score=40.76 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=77.4
Q ss_pred ceeEEEEccCCCEEE--EeeCCCcEEEEeecCCCc---eEEEEecC------cccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 13 TVHDVAMDFYGKRLA--TASSDSSIKIIGLSNSAS---QHLATLKG------HRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~--s~~~d~~v~lw~~~~~~~---~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
++..+...+|+...+ ..+.+-.|..||+..-.. +...-|.. ......++.|.|. -....|.+..|+.|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSL 180 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccch
Confidence 445555566765443 333444677888742110 00111111 1223356677643 34456788899999
Q ss_pred EEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCC
Q 022111 82 IIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAP 159 (302)
Q Consensus 82 ~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 159 (302)
++..+.... ..+..+. -....++++|+|. |++++.|...|++.-|.-.-.-...+..........|.++.|-.
T Consensus 181 ~V~~~~~~~--~~v~s~p-~t~~~Tav~WSpr--GKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 181 RVKSTKQLA--QNVTSFP-VTNSQTAVLWSPR--GKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhh--hhhcccC-cccceeeEEeccc--cceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEec
Confidence 998653321 1122222 3456799999996 88999999999998886432111111111101135688999854
No 386
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=27 Score=31.86 Aligned_cols=145 Identities=10% Similarity=0.115 Sum_probs=76.3
Q ss_pred EeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec-ccCCCCeE
Q 022111 75 CSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID-QAHPVGVT 153 (302)
Q Consensus 75 ~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~-~~h~~~v~ 153 (302)
|-..|.+.=|.....++..+..--....++|.++.|+|| .+.+|.-..++.|.++....+......... +.....|.
T Consensus 39 avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~Il 116 (657)
T KOG2377|consen 39 AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANIL 116 (657)
T ss_pred EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeE
Confidence 333444555655433322222222234679999999999 568999999999999876433221110000 12233477
Q ss_pred EEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEec
Q 022111 154 SVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQ 233 (302)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~ 233 (302)
...|+... -+|--+.. -+.+|-+..... .++..+.|+-.|+=-.|.|+... -.++|+-+
T Consensus 117 GF~W~~s~---------------e~A~i~~~-G~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v--~LL~t~~~ 175 (657)
T KOG2377|consen 117 GFCWTSST---------------EIAFITDQ-GIEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAV--ILLSTTVL 175 (657)
T ss_pred EEEEecCe---------------eEEEEecC-CeEEEEEchhhh---hhhhhhhcccCccEEEEccccce--Eeeecccc
Confidence 88887542 23333322 366666543221 22333456666777777776421 22333334
Q ss_pred CCeEEEEEe
Q 022111 234 DGTVVIWTC 242 (302)
Q Consensus 234 D~~i~iwd~ 242 (302)
.+++.-+-+
T Consensus 176 ~n~lnpf~~ 184 (657)
T KOG2377|consen 176 ENVLNPFHF 184 (657)
T ss_pred ccccccEEE
Confidence 444444443
No 387
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.69 E-value=20 Score=34.78 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCEEEEeeCCCcEEEEeecC-------C--C---------ceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 22 YGKRLATASSDSSIKIIGLSN-------S--A---------SQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 22 ~~~~l~s~~~d~~v~lw~~~~-------~--~---------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
....|+.|.+||.|.+|..+. . . .++...+. -...+|++++..-+..++||.++.-..|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 347899999999999997620 0 0 01222332 345789999851123678888888888888
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCC---C-cEEEEEecCCcEEEEEe
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL---G-LSLACGSSDGNISVFTA 133 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~---~-~~l~sg~~d~~v~~~~~ 133 (302)
|-............-..|...|.+|+|-++.. | ..|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 86533111001111112667899999987642 3 27889999999999877
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.08 E-value=24 Score=30.60 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=50.9
Q ss_pred ceeEEEEccCCCEEEEeeCC-CcEEEEeecCCC----ceE-EEEecCcccCeEEEEeeCCCCCCEEEEEeCCC-eEEEEE
Q 022111 13 TVHDVAMDFYGKRLATASSD-SSIKIIGLSNSA----SQH-LATLKGHRGPVWQVAWAHPKFGSILASCSYDG-QVIIWK 85 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d-~~v~lw~~~~~~----~~~-~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~-~i~iwd 85 (302)
.-+.|+||||++.|..+-.. +.|.-|++.... .+. ...+..+.+.--.++.. .+|++-+++-.++ .|..|+
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCCCEEEecccCCceEEEEC
Confidence 34579999999877766543 666666664211 111 11222223333345543 3477665444443 788887
Q ss_pred cCCCCceeEEEEecCCCCCeeEEEec
Q 022111 86 EGNQNDWTQAHTFNDHKSSVNSIAWA 111 (302)
Q Consensus 86 ~~~~~~~~~~~~~~~h~~~i~~l~~~ 111 (302)
.. + +.+..+......+++++|-
T Consensus 242 pd-G---~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 242 PD-G---KLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CC-C---cEEEEEECCCCCCccceEe
Confidence 65 3 2455555554666777774
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=84.73 E-value=25 Score=30.41 Aligned_cols=172 Identities=12% Similarity=0.249 Sum_probs=78.2
Q ss_pred EEEcC-CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccCCCCeEEEEeCCCC
Q 022111 83 IWKEG-NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 83 iwd~~-~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 161 (302)
||.-. .+..|+.+. ..-.+.+..+.-++| |.+++.++......-|+-. ...|.+... .....+..+.|.|+.
T Consensus 126 iy~T~DgG~tW~~~~--~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G-~~~w~~~~r--~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 126 IYRTTDGGKTWQAVV--SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPG-QTTWQPHNR--NSSRRIQSMGFSPDG 198 (302)
T ss_dssp EEEESSTTSSEEEEE---S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT--SS-EEEE----SSS-EEEEEE-TTS
T ss_pred EEEeCCCCCCeeEcc--cCCcceeEeEEECCC--CcEEEEECcccEEEEecCC-CccceEEcc--CccceehhceecCCC
Confidence 44433 344565433 344577888888877 7777776555544455532 123554432 235678899998863
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEe--cCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMY--NGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVI 239 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~i 239 (302)
. |...+..+.|++=+.. ...|..... ....-.-.+.+++|.|+. ...|+ +..|+|
T Consensus 199 --------------~-lw~~~~Gg~~~~s~~~~~~~~w~~~~~-~~~~~~~~~ld~a~~~~~----~~wa~-gg~G~l-- 255 (302)
T PF14870_consen 199 --------------N-LWMLARGGQIQFSDDPDDGETWSEPII-PIKTNGYGILDLAYRPPN----EIWAV-GGSGTL-- 255 (302)
T ss_dssp ----------------EEEEETTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-----EEEE-ESTT-E--
T ss_pred --------------C-EEEEeCCcEEEEccCCCCccccccccC-CcccCceeeEEEEecCCC----CEEEE-eCCccE--
Confidence 2 3233466777776511 111211111 111122338999998873 44554 445544
Q ss_pred EEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCCceEEe
Q 022111 240 WTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284 (302)
Q Consensus 240 wd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d~i~~w 284 (302)
+--.+.+..|+... .......++.|.|.++.+-++.|.+.-|..|
T Consensus 256 ~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 256 LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 33344445564322 1234556899999877788888854444434
No 390
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.01 E-value=30 Score=30.61 Aligned_cols=227 Identities=14% Similarity=0.104 Sum_probs=102.1
Q ss_pred eEEEEccCCCEEEEeeC-CCcEEEEeecCCCceEEEEecCccc---CeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 15 HDVAMDFYGKRLATASS-DSSIKIIGLSNSASQHLATLKGHRG---PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~-d~~v~lw~~~~~~~~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
..+-||||+++||-.-. +..|+.+.+. ....... .+..+.|..+ |.--.. -.+.++|+.++.
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~--------~~~~~~~~yp~~~~~~YPk~--G~~np~----v~l~v~~~~~~~ 169 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLP--------DYSPPDSQYPEVESIRYPKA--GDPNPR----VSLFVVDLASGK 169 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEE--------EESSSTESS-EEEEEE--BT--TS---E----EEEEEEESSSTC
T ss_pred cceEECCCCCEEEEEEECCcCCceEEee--------ccCCccccCCcccccccCCC--CCcCCc----eEEEEEECCCCc
Confidence 34679999998886653 3555554431 1111111 3556776332 332221 136667776654
Q ss_pred ceeEEEE---ecCCCCCeeEEEecCCCCCcEEEEEecCCc---EEEEEecCCCCeeeeeecccCCCCe---EEEEeC-CC
Q 022111 91 DWTQAHT---FNDHKSSVNSIAWAPHELGLSLACGSSDGN---ISVFTATADGGWDTTRIDQAHPVGV---TSVSWA-PA 160 (302)
Q Consensus 91 ~~~~~~~---~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~---v~~~~~~~~~~~~~~~~~~~h~~~v---~~~~~~-~~ 160 (302)
.. .+.. +..-...+..+.|.++.....+...+.+.+ +.++|..+... .... .......+ ....+. ++
T Consensus 170 ~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 170 TT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp CC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTT
T ss_pred EE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCC
Confidence 21 1111 123456788999998832123333333332 22344433211 1111 10111111 122221 21
Q ss_pred CCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeE-EEeeCCCCCCccEEEEEecC--CeE
Q 022111 161 MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRS-VAWAPNLGLPKSTIASASQD--GTV 237 (302)
Q Consensus 161 ~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~-v~~~p~~~~~~~~l~s~s~D--~~i 237 (302)
...+|.....||.-+|+-+...... ...++...-.|.. +.|++++ +....++..+ ..-
T Consensus 247 -------------~~~~l~~s~~~G~~hly~~~~~~~~---~~~lT~G~~~V~~i~~~d~~~---~~iyf~a~~~~p~~r 307 (353)
T PF00930_consen 247 -------------GNEFLWISERDGYRHLYLYDLDGGK---PRQLTSGDWEVTSILGWDEDN---NRIYFTANGDNPGER 307 (353)
T ss_dssp -------------SSEEEEEEETTSSEEEEEEETTSSE---EEESS-SSS-EEEEEEEECTS---SEEEEEESSGGTTSB
T ss_pred -------------CCEEEEEEEcCCCcEEEEEcccccc---eeccccCceeecccceEcCCC---CEEEEEecCCCCCce
Confidence 2355555557887666665432211 2233444555655 6677775 3445555542 345
Q ss_pred EEEEeccC-CcceeeeeeccCCCcEEEEEEccCCCEEEEecCC
Q 022111 238 VIWTCAKE-GEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 238 ~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d 279 (302)
.+|.+... .... ..+......-.+++|||+|++++...+.
T Consensus 308 ~lY~v~~~~~~~~--~~LT~~~~~~~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 308 HLYRVSLDSGGEP--KCLTCEDGDHYSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEEEETTETTEE--EESSTTSSTTEEEEE-TTSSEEEEEEES
T ss_pred EEEEEEeCCCCCe--EeccCCCCCceEEEECCCCCEEEEEEcC
Confidence 66665543 2221 2222222222789999999999876543
No 391
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.93 E-value=44 Score=32.55 Aligned_cols=159 Identities=14% Similarity=0.080 Sum_probs=85.9
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceE----EEEe---------c-------CcccCeEEEEeeCCCCCCEEEEEeCCCeEE
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQH----LATL---------K-------GHRGPVWQVAWAHPKFGSILASCSYDGQVI 82 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~----~~~~---------~-------~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~ 82 (302)
..+|+.| ..+.|.||+...-...+ ...+ . .-...|+.|....-....+|+.|..||.|.
T Consensus 49 ~n~LFiA-~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIA-YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEE-ECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 5566664 47889999974322100 0000 0 011235555543222245899999999999
Q ss_pred EEEcCC-------C---Cc-------eeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeec
Q 022111 83 IWKEGN-------Q---ND-------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRID 145 (302)
Q Consensus 83 iwd~~~-------~---~~-------~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~ 145 (302)
+|..+. . .. ..+...+. -......|+++......+||.++....|.||-.............
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996521 0 00 01111222 234667788871122457888888888888755431110101101
Q ss_pred ccCCCCeEEEEeCCCCCCCceeecccCCCc-eeEEEeeCCCcEEEEEE
Q 022111 146 QAHPVGVTSVSWAPAMAPGALVGLGLLDPV-QKLASCGCDNTVKVWKM 192 (302)
Q Consensus 146 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~D~~v~iwd~ 192 (302)
..|...|-+++|-+.... +.| ..+++++-.|.+-+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d---------~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLD---------PNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCC---------CccceEEEEEeccCcEEEEEE
Confidence 124445777888765311 112 26777888999998887
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=83.69 E-value=25 Score=29.54 Aligned_cols=147 Identities=17% Similarity=0.237 Sum_probs=78.2
Q ss_pred cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEE-----
Q 022111 21 FYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQA----- 95 (302)
Q Consensus 21 ~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~----- 95 (302)
..++.|+.|..+| +.+++.... ....... +...|..+...+. -+.|+.- .|+++.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~--~~~~I~ql~vl~~--~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-SKPTRIL--KLSSITQLSVLPE--LNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-ccceeEe--ecceEEEEEEecc--cCEEEEE-cCCccEEEEchhhccccccccccc
Confidence 4578899998888 889988322 1222222 2334989988754 2333332 4599999998543211100
Q ss_pred -------EEecCCCCCeeEEE-ecCCCCCcEEEEEecCCcEEEEEecCCC-Ce--eeeeecccCCCCeEEEEeCCCCCCC
Q 022111 96 -------HTFNDHKSSVNSIA-WAPHELGLSLACGSSDGNISVFTATADG-GW--DTTRIDQAHPVGVTSVSWAPAMAPG 164 (302)
Q Consensus 96 -------~~~~~h~~~i~~l~-~~pd~~~~~l~sg~~d~~v~~~~~~~~~-~~--~~~~~~~~h~~~v~~~~~~~~~~~~ 164 (302)
..+. ....+..++ -.... +...+.....++|.+|...... .+ ...++ .-+..+.++.|..
T Consensus 78 ~~~~~~~~~~~-~~~~v~~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~i~~~~----- 148 (275)
T PF00780_consen 78 PKSRSLPTKLP-ETKGVSFFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSSIAFLG----- 148 (275)
T ss_pred ccccccccccc-ccCCeeEEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEEEEEeC-----
Confidence 0111 112223332 11222 3344455566799999876531 22 22222 2345677888863
Q ss_pred ceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111 165 ALVGLGLLDPVQKLASCGCDNTVKVWKMYNG 195 (302)
Q Consensus 165 ~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~ 195 (302)
..|+.|.. +...+.|+.++
T Consensus 149 -----------~~i~v~~~-~~f~~idl~~~ 167 (275)
T PF00780_consen 149 -----------NKICVGTS-KGFYLIDLNTG 167 (275)
T ss_pred -----------CEEEEEeC-CceEEEecCCC
Confidence 34555544 44778888754
No 393
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=83.05 E-value=27 Score=29.33 Aligned_cols=165 Identities=13% Similarity=0.155 Sum_probs=81.0
Q ss_pred ccccccceeEEEEccCCCEEE-EeeCCCcEEEEeecCCCceEEEE--ecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 7 ETGHEDTVHDVAMDFYGKRLA-TASSDSSIKIIGLSNSASQHLAT--LKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~lw~~~~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
..+-.+.+.+++|+|+.+.|+ +....+.|..++.+ ++.+.. +.+ .+..-.|++..+ +.++++--.++.+.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g-~~D~EgI~y~g~--~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDG-FGDYEGITYLGN--GRYVLSEERDQRLYI 90 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS--SSEEEEEE-ST--TEEEEEETTTTEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCC-CCCceeEEEECC--CEEEEEEcCCCcEEE
Confidence 345556799999999866554 44455666555543 233333 444 245678888642 555555445888988
Q ss_pred EEcCCCCc---eeEEEEec-----CCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC--CC-Ceeeeee-----ccc
Q 022111 84 WKEGNQND---WTQAHTFN-----DHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA--DG-GWDTTRI-----DQA 147 (302)
Q Consensus 84 wd~~~~~~---~~~~~~~~-----~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~--~~-~~~~~~~-----~~~ 147 (302)
.++..... ......+. .++.-+-.++|.|.. ..|..+-...-..+|.+.. .. ....... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~--~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT--NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTT--TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCC--CEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 88743221 11111111 245568899999873 3455555566667776653 11 1111000 011
Q ss_pred CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE
Q 022111 148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM 192 (302)
Q Consensus 148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~ 192 (302)
....++++.+.|.. +.+++-+...+.|-.+|.
T Consensus 169 ~~~d~S~l~~~p~t-------------~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 169 FVRDLSGLSYDPRT-------------GHLLILSDESRLLLELDR 200 (248)
T ss_dssp -SS---EEEEETTT-------------TEEEEEETTTTEEEEE-T
T ss_pred eeccccceEEcCCC-------------CeEEEEECCCCeEEEECC
Confidence 22345677776643 456666777777777773
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=82.86 E-value=44 Score=32.85 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=33.0
Q ss_pred cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce
Q 022111 207 MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW 249 (302)
Q Consensus 207 ~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~ 249 (302)
.+...|..+.|+|.+ .++.+|+.=..|++||+||+.....++
T Consensus 144 ~~~~~i~qv~WhP~s-~~~~~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWS-ESDSHLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred CCCceEEEEEEcCCC-CCCCeEEEEecCCEEEEEecCCCCCCe
Confidence 345679999999974 346889999999999999997654443
No 395
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=82.48 E-value=12 Score=33.96 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=49.9
Q ss_pred ccEEEEEecCCeEEEEEeccCCccee-eeeeccCCCcEEEEEE---cc--CCCEEEEecCCceEEeee-cCCc------e
Q 022111 225 KSTIASASQDGTVVIWTCAKEGEQWE-GRVLKDFKTPVWSVSW---SL--TGNLLAVADANNVTLWKE-AVDG------E 291 (302)
Q Consensus 225 ~~~l~s~s~D~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~---sp--dg~~la~~~~d~i~~w~~-~~~~------~ 291 (302)
...|+.||..|.+||++......... ..+-...+.||..++. .+ +...||+-...++.+|.. ..+| +
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 46899999999999999855331111 1122456778888764 23 446888888889999987 2222 3
Q ss_pred EEEeeecCC
Q 022111 292 WQQVSVVEP 300 (302)
Q Consensus 292 ~~~~~~~~~ 300 (302)
+.....++|
T Consensus 117 ~~L~~~yeh 125 (418)
T PF14727_consen 117 YQLELIYEH 125 (418)
T ss_pred EEEEEEEEE
Confidence 665555554
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=80.60 E-value=26 Score=31.86 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=28.2
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCcEEEEeecC
Q 022111 7 ETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSN 42 (302)
Q Consensus 7 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~ 42 (302)
+......+.+++.+|++++.|+...-|.|.|+|+..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~ 338 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR 338 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 334455688899999998888776669999999865
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.41 E-value=46 Score=30.35 Aligned_cols=235 Identities=11% Similarity=0.112 Sum_probs=90.4
Q ss_pred CCCEEEEee-CCCcEEEEeecCCCc--eEEEEecC---cc-cCeE--EEEeeCCCCCCEEEEEeC------CCeEEEEEc
Q 022111 22 YGKRLATAS-SDSSIKIIGLSNSAS--QHLATLKG---HR-GPVW--QVAWAHPKFGSILASCSY------DGQVIIWKE 86 (302)
Q Consensus 22 ~~~~l~s~~-~d~~v~lw~~~~~~~--~~~~~~~~---h~-~~v~--~v~~~~~~~~~~l~s~s~------D~~i~iwd~ 86 (302)
..++|+..+ ....|+|.|+...+. +..+.+.. +. ..+. .-..+-+ +|.+++|+-. -|-+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 357888888 568899999864332 22222221 11 0110 0001112 3777777622 233555554
Q ss_pred CCCCceeEEEEecC---CCCCeeEEEecCCCCCcEEEEEe--------------------cCCcEEEEEecCCCCeeeee
Q 022111 87 GNQNDWTQAHTFND---HKSSVNSIAWAPHELGLSLACGS--------------------SDGNISVFTATADGGWDTTR 143 (302)
Q Consensus 87 ~~~~~~~~~~~~~~---h~~~i~~l~~~pd~~~~~l~sg~--------------------~d~~v~~~~~~~~~~~~~~~ 143 (302)
++- ........ ....-..+-|.|.. ..++|.. ..+++.+||+.+....+...
T Consensus 165 ~tf---~v~g~We~~~~~~~~gYDfw~qpr~--nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 165 ETF---EVKGRWEKDRGPQPFGYDFWYQPRH--NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp TT-----EEEE--SB-TT------EEEETTT--TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred ccc---cccceeccCCCCCCCCCCeEEcCCC--CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 321 11122211 12233455566642 2444442 45789999997654333333
Q ss_pred ecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEE-ecCcccccccc-----------------cc
Q 022111 144 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM-YNGIWKMDCFP-----------------AL 205 (302)
Q Consensus 144 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~-~~~~~~~~~~~-----------------~~ 205 (302)
+...+ .....+.|..+.. ...-++.|....+|-.|-- ..+.|..+.+. .+
T Consensus 240 Lg~~g-~~pLEvRflH~P~-----------~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~ 307 (461)
T PF05694_consen 240 LGEEG-QMPLEVRFLHDPD-----------ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPF 307 (461)
T ss_dssp S-TTE-EEEEEEEE-SSTT-------------EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG
T ss_pred cCCCC-CceEEEEecCCCC-----------ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccc
Confidence 32111 1233445533211 0233555555555554433 55555433221 22
Q ss_pred ccCCCceeEEEeeCCCCCCccEE-EEEecCCeEEEEEeccCCccee-eeee-c--------------cCCCcEEEEEEcc
Q 022111 206 QMHSDWVRSVAWAPNLGLPKSTI-ASASQDGTVVIWTCAKEGEQWE-GRVL-K--------------DFKTPVWSVSWSL 268 (302)
Q Consensus 206 ~~h~~~v~~v~~~p~~~~~~~~l-~s~s~D~~i~iwd~~~~~~~~~-~~~~-~--------------~~~~~v~~~~~sp 268 (302)
..-..-|++|..|.|. ++| ++.=.+|.||.||+.....+.. .++. . ...+...=|..|.
T Consensus 308 ~~~P~LitDI~iSlDD----rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 308 GAVPPLITDILISLDD----RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp -EE------EEE-TTS-----EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred ccCCCceEeEEEccCC----CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 2224568999999884 444 4444699999999987543322 1111 1 0112234578899
Q ss_pred CCCEEEEecC
Q 022111 269 TGNLLAVADA 278 (302)
Q Consensus 269 dg~~la~~~~ 278 (302)
||++|-+..+
T Consensus 384 DGkRlYvTnS 393 (461)
T PF05694_consen 384 DGKRLYVTNS 393 (461)
T ss_dssp TSSEEEEE--
T ss_pred CCeEEEEEee
Confidence 9999977743
No 398
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=79.72 E-value=20 Score=28.11 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=27.0
Q ss_pred CceeEEEeeCCCC--CCccEEEEEecCCeEEEEEecc
Q 022111 210 DWVRSVAWAPNLG--LPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 210 ~~v~~v~~~p~~~--~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..|.+++|||.|- ..+..||.-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3789999999762 1235788889999999998654
No 399
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.60 E-value=39 Score=29.06 Aligned_cols=154 Identities=11% Similarity=-0.025 Sum_probs=81.2
Q ss_pred cCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC
Q 022111 56 GPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA 135 (302)
Q Consensus 56 ~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~ 135 (302)
+-+..++++ ++++..+-++.-++|.|+.+....+++..+. -.+.-.++..+ |..+..+..|.-.-++|+..
T Consensus 87 ~l~~Dv~vs----e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~vs----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 87 DLFADVRVS----EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYVS----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhheeEec----ccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEec----CCEEEEeeccCcEEEEECCC
Confidence 345667775 4677777788889999997764433333333 22455666665 56777777677777888864
Q ss_pred CCCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCC---Cce
Q 022111 136 DGGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHS---DWV 212 (302)
Q Consensus 136 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~---~~v 212 (302)
...-.+.-...........+..+ |++-..+..|+-+.|-|+..+.. +.|.+|- ..+
T Consensus 158 pssP~lagrya~~~~d~~~v~IS----------------Gn~AYvA~~d~GL~ivDVSnp~s-----Pvli~~~n~g~g~ 216 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS----------------GNYAYVAWRDGGLTIVDVSNPHS-----PVLIGSYNTGPGT 216 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe----------------cCeEEEEEeCCCeEEEEccCCCC-----CeEEEEEecCCce
Confidence 33211110000001101111111 23333444788899999876531 2333332 256
Q ss_pred eEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 213 RSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 213 ~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
.++.-+++. .+++.. +..+.+-|....
T Consensus 217 ~sv~vsdnr----~y~vvy--~egvlivd~s~~ 243 (370)
T COG5276 217 YSVSVSDNR----AYLVVY--DEGVLIVDVSGP 243 (370)
T ss_pred EEEEecCCe----eEEEEc--ccceEEEecCCC
Confidence 777767652 333333 333555555443
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.40 E-value=56 Score=32.14 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=48.2
Q ss_pred CCCeeEEEecCCCCCcEEEEEecCCcEEEEEecC----CC-----C--e--eeeee-----cccCCCCeEEEEeCCCCCC
Q 022111 102 KSSVNSIAWAPHELGLSLACGSSDGNISVFTATA----DG-----G--W--DTTRI-----DQAHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 102 ~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~----~~-----~--~--~~~~~-----~~~h~~~v~~~~~~~~~~~ 163 (302)
...|..|.++|+ |..||-.|..+.+ |..+.. .+ . . ....+ ...+...|..+.|.|...
T Consensus 84 ~f~v~~i~~n~~--g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~- 159 (717)
T PF10168_consen 84 LFEVHQISLNPT--GSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE- 159 (717)
T ss_pred ceeEEEEEECCC--CCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC-
Confidence 346778888887 6777777765544 443321 11 0 0 11111 112344688899999642
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMYNG 195 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~ 195 (302)
.+..|+.=..|+++|+||+...
T Consensus 160 ----------~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 160 ----------SDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ----------CCCeEEEEecCCEEEEEecCCC
Confidence 2346677778999999999654
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.88 E-value=48 Score=29.08 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=53.2
Q ss_pred EEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCcc--ccccc-cccccCCCceeEEEeeCCCCCCccEEE
Q 022111 153 TSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIW--KMDCF-PALQMHSDWVRSVAWAPNLGLPKSTIA 229 (302)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~--~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~ 229 (302)
+.++|.|+ ++.|+ +...|.|++++ ..+.. .+..+ ............++++|+-..++...+
T Consensus 5 ~~~a~~pd--------------G~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv 68 (331)
T PF07995_consen 5 RSMAFLPD--------------GRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYV 68 (331)
T ss_dssp EEEEEETT--------------SCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEE
T ss_pred eEEEEeCC--------------CcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEE
Confidence 56777775 34444 45588899988 33322 11111 122334556899999996433334455
Q ss_pred EEecC------CeEEEE--EeccCCcce--eeeee---c---cCCCcEEEEEEccCCCEEEEecC
Q 022111 230 SASQD------GTVVIW--TCAKEGEQW--EGRVL---K---DFKTPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 230 s~s~D------~~i~iw--d~~~~~~~~--~~~~~---~---~~~~~v~~~~~spdg~~la~~~~ 278 (302)
+.+.. ...+|. ......... ...+. . ........|+|.|||.++++.++
T Consensus 69 ~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 69 YYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred EEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 55532 223343 332220010 01111 1 12234677999999977766644
No 402
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=77.09 E-value=16 Score=33.73 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=51.7
Q ss_pred CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
+.++.-.||.-......+||.+|..|-||+||.-...+ ...+.+++..|..+.-+.+|+.|++.+...+.|-+.
T Consensus 558 dY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA---KtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~ 631 (776)
T COG5167 558 DYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA---KTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV 631 (776)
T ss_pred hccccccccccccccCceEEEecCCCceeeehhhcchh---hhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence 33444444432222346899999999999999643222 234466777899999999999998888777777775
No 403
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.44 E-value=90 Score=31.50 Aligned_cols=107 Identities=11% Similarity=0.156 Sum_probs=65.0
Q ss_pred EEEEccC-CCEEEEee----------CCCcEEEEeecC-CCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEE
Q 022111 16 DVAMDFY-GKRLATAS----------SDSSIKIIGLSN-SASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVII 83 (302)
Q Consensus 16 ~~~~s~~-~~~l~s~~----------~d~~v~lw~~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~i 83 (302)
++.|..| +.+++.|. ..|.|.++.++. +..+.+... --++.+.++.-. .|++|| +-..+|++
T Consensus 779 s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~aL~~f---ngkllA--~In~~vrL 852 (1096)
T KOG1897|consen 779 SCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYALVEF---NGKLLA--GINQSVRL 852 (1096)
T ss_pred eeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceeehhhh---CCeEEE--ecCcEEEE
Confidence 3447666 56777664 345566776654 222222211 124556666543 267766 45678999
Q ss_pred EEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEe
Q 022111 84 WKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 133 (302)
Q Consensus 84 wd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~ 133 (302)
|+....+ .+..-..|..++..+...-. +..++.|+.-+.+.+-..
T Consensus 853 ye~t~~~---eLr~e~~~~~~~~aL~l~v~--gdeI~VgDlm~Sitll~y 897 (1096)
T KOG1897|consen 853 YEWTTER---ELRIECNISNPIIALDLQVK--GDEIAVGDLMRSITLLQY 897 (1096)
T ss_pred EEccccc---eehhhhcccCCeEEEEEEec--CcEEEEeeccceEEEEEE
Confidence 9986542 23333346677888887655 568999998888887543
No 404
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.33 E-value=18 Score=34.12 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=38.1
Q ss_pred CCCEEEEeeCCCcEEEEeecC---CCceEEEE-ecCc--------------------ccCeEEEEeeC--CCCCCEEEEE
Q 022111 22 YGKRLATASSDSSIKIIGLSN---SASQHLAT-LKGH--------------------RGPVWQVAWAH--PKFGSILASC 75 (302)
Q Consensus 22 ~~~~l~s~~~d~~v~lw~~~~---~~~~~~~~-~~~h--------------------~~~v~~v~~~~--~~~~~~l~s~ 75 (302)
+...++.+..||.+....... ........ +..+ ...+..+.... -.+..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 566777888999888877643 11111111 1111 12334444433 1125789999
Q ss_pred eCCCeEEEEEcCCCC
Q 022111 76 SYDGQVIIWKEGNQN 90 (302)
Q Consensus 76 s~D~~i~iwd~~~~~ 90 (302)
+.|+++|+||+.++.
T Consensus 237 ~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQ 251 (547)
T ss_dssp ETTSEEEEEETTTTC
T ss_pred eCCCeEEEEECCCCe
Confidence 999999999998764
No 405
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.32 E-value=65 Score=29.29 Aligned_cols=48 Identities=17% Similarity=0.361 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 80 QVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 80 ~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
.|+||+.... .+.++.--.+.|-++.|..++ .|+.-..||.+++|+..
T Consensus 62 ~I~iys~sG~----ll~~i~w~~~~iv~~~wt~~e---~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGK----LLSSIPWDSGRIVGMGWTDDE---ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCC----EeEEEEECCCCEEEEEECCCC---eEEEEEcCCEEEEEeCC
Confidence 5888876432 333333233889999998753 57777899999999874
No 406
>PRK02888 nitrous-oxide reductase; Validated
Probab=75.00 E-value=25 Score=33.63 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred CCcEEEEEEec----CccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeee------e
Q 022111 184 DNTVKVWKMYN----GIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGR------V 253 (302)
Q Consensus 184 D~~v~iwd~~~----~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~------~ 253 (302)
++.|.+.|..+ +. . ... +..-......++++||+ ...++++..+.++.|.|+.......... +
T Consensus 295 gn~V~VID~~t~~~~~~-~--v~~-yIPVGKsPHGV~vSPDG---kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGS-A--LTR-YVPVPKNPHGVNTSPDG---KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCc-c--eEE-EEECCCCccceEECCCC---CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 57799999876 21 1 111 11122334578999997 2456677779999999997643211100 1
Q ss_pred ec--cCCCcEEEEEEccCCCEEEEecCC-ceEEeeecC
Q 022111 254 LK--DFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAV 288 (302)
Q Consensus 254 ~~--~~~~~v~~~~~spdg~~la~~~~d-~i~~w~~~~ 288 (302)
.. +....-.-.+|.++|+...+-.-| .|..|+...
T Consensus 368 vaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11 112234468999999877777667 688999754
No 407
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=73.80 E-value=11 Score=23.34 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=22.9
Q ss_pred cEEEEEEccCCCEEEEec-----CC-ceEEeeecCCceE
Q 022111 260 PVWSVSWSLTGNLLAVAD-----AN-NVTLWKEAVDGEW 292 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~-----~d-~i~~w~~~~~~~~ 292 (302)
.+++++.-|||++|++|. .+ ...+.+...+|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 367888889999998884 23 4566666666553
No 408
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=71.50 E-value=21 Score=29.29 Aligned_cols=65 Identities=18% Similarity=0.185 Sum_probs=41.9
Q ss_pred ceeEEEeeCCCcEEEEEEecCcccccc---ccccc-------cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 175 VQKLASCGCDNTVKVWKMYNGIWKMDC---FPALQ-------MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 175 ~~~l~s~~~D~~v~iwd~~~~~~~~~~---~~~~~-------~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
+.+|+.-+.+|.+++||+.+....+.. .+-+. .....|.++..+.+| .-|++-+ +|....|+.+-
T Consensus 22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G----~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG----VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC----CEEEEEe-CCCEEEecccc
Confidence 467888899999999999876322211 11122 355678888888765 3455554 46678887653
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.33 E-value=26 Score=29.10 Aligned_cols=60 Identities=7% Similarity=0.137 Sum_probs=41.1
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCC
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYD 78 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D 78 (302)
++.+..|+..+++-..++|.-.|..+ ++.+..++-....|+++||--++..-+.+|+..+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~t--GK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTT--GKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCC--CcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 44556678777777888888877755 4566667666888999999754333355565543
No 410
>PRK02888 nitrous-oxide reductase; Validated
Probab=71.16 E-value=28 Score=33.28 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=48.4
Q ss_pred ceeEEEEccCCCEEEEee-CCCcEEEEeecCCCc----------eEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeE
Q 022111 13 TVHDVAMDFYGKRLATAS-SDSSIKIIGLSNSAS----------QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQV 81 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~-~d~~v~lw~~~~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i 81 (302)
....++++|||+++++++ .+.+|.+.|+..... .......--.++ ...+|.. +|+...|---|.+|
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg--~G~aytslf~dsqv 398 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDG--RGNAYTTLFLDSQI 398 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECC--CCCEEEeEeeccee
Confidence 456789999999776555 689999999864221 011222112233 2567754 37778888889999
Q ss_pred EEEEcCC
Q 022111 82 IIWKEGN 88 (302)
Q Consensus 82 ~iwd~~~ 88 (302)
..|++..
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 9999854
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=70.55 E-value=75 Score=27.92 Aligned_cols=81 Identities=14% Similarity=0.261 Sum_probs=45.0
Q ss_pred CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeec--cCCCcEEEEEEccCCCEEEEecCCceEEeee
Q 022111 209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLK--DFKTPVWSVSWSLTGNLLAVADANNVTLWKE 286 (302)
Q Consensus 209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~la~~~~d~i~~w~~ 286 (302)
...++++.+.|++ ..++ .+..|.+++=. ......|...... .....+.++.|.|+++.++++ .++..+...
T Consensus 214 ~~~l~~i~~~~~g----~~~~-vg~~G~~~~~s-~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~S~ 286 (334)
T PRK13684 214 SRRLQSMGFQPDG----NLWM-LARGGQIRFND-PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLVSK 286 (334)
T ss_pred cccceeeeEcCCC----CEEE-EecCCEEEEcc-CCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEEeC
Confidence 4568899998874 3444 45667664311 1222334321111 012347889999988877666 455444544
Q ss_pred cCCceEEEee
Q 022111 287 AVDGEWQQVS 296 (302)
Q Consensus 287 ~~~~~~~~~~ 296 (302)
.....|+...
T Consensus 287 d~G~tW~~~~ 296 (334)
T PRK13684 287 DGGKTWEKDP 296 (334)
T ss_pred CCCCCCeECC
Confidence 4445687653
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=70.18 E-value=80 Score=28.11 Aligned_cols=19 Identities=11% Similarity=0.111 Sum_probs=14.5
Q ss_pred cEEEEEEccCCCEEEEecC
Q 022111 260 PVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~~ 278 (302)
..+.++|+|+|+++++-..
T Consensus 185 np~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCccceECCCCCEEEEccC
Confidence 3568999999998876543
No 413
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=69.94 E-value=70 Score=27.39 Aligned_cols=120 Identities=14% Similarity=0.247 Sum_probs=64.8
Q ss_pred CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe------CCCeEEEEEcCCCCceeEEEE-e-cCCCCC
Q 022111 33 SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS------YDGQVIIWKEGNQNDWTQAHT-F-NDHKSS 104 (302)
Q Consensus 33 ~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s------~D~~i~iwd~~~~~~~~~~~~-~-~~h~~~ 104 (302)
..|.+||..+...... -.+-.+.|+++.|.. ..++++.|. ....+..||..+. .|..... . ..-.++
T Consensus 16 ~~lC~yd~~~~qW~~~--g~~i~G~V~~l~~~~--~~~Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSP--GNGISGTVTDLQWAS--NNQLLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecC--CCCceEEEEEEEEec--CCEEEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccccCCCc
Confidence 4588999765443322 123467899999963 256676664 4567888998654 3443322 1 123478
Q ss_pred eeEEEecCCCCCcEEEEEe-cCC--cEEEEEecCCCCeeeeee-cccCCCCeEEEEeCCC
Q 022111 105 VNSIAWAPHELGLSLACGS-SDG--NISVFTATADGGWDTTRI-DQAHPVGVTSVSWAPA 160 (302)
Q Consensus 105 i~~l~~~pd~~~~~l~sg~-~d~--~v~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~ 160 (302)
|..+.+...+.....+.|. .++ .+..||. ..|..... .......|..+.+-|-
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG---s~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDG---SSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcC---CceEeccccccCCCCEEEEEEEEec
Confidence 8888875443334454443 333 4555643 34543221 0011234666665553
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.17 E-value=33 Score=27.95 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=35.7
Q ss_pred CEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEe
Q 022111 24 KRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCS 76 (302)
Q Consensus 24 ~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s 76 (302)
+.|+.+....+|.+|++..+..+.+..|.-- +.|..+.++.. |++|+|=-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~--GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEA--GDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccc--cceEEEEE
Confidence 4554445667899999975555666667543 67889999754 89998853
No 415
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.48 E-value=1.2e+02 Score=28.58 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=22.9
Q ss_pred eeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 212 VRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 212 v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
+..++|+|+. ....+|..-+.|..||+||..+.
T Consensus 168 l~Qa~WHP~S-~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 168 LKQAAWHPSS-ILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeccccCCc-cCCceEEEEecCcEEEEEecCCc
Confidence 4567788874 22466777777888888887654
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=66.33 E-value=1.1e+02 Score=28.05 Aligned_cols=154 Identities=12% Similarity=0.154 Sum_probs=83.9
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCce--eEEEEecCCCCCeeEEEec---CCCCCcEEEEEecCCcEEEEEecCCC-C----
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDW--TQAHTFNDHKSSVNSIAWA---PHELGLSLACGSSDGNISVFTATADG-G---- 138 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~i~~l~~~---pd~~~~~l~sg~~d~~v~~~~~~~~~-~---- 138 (302)
...|+.||..|.++||++...... ..+-.. .-+.+|-.+... +......||. =--+.+.+|.+.... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 468999999999999998543210 111111 245778877653 2222233443 445677888774221 1
Q ss_pred --eeeeeecccCCC--CeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeE
Q 022111 139 --WDTTRIDQAHPV--GVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRS 214 (302)
Q Consensus 139 --~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 214 (302)
..+.... .|.- ....+.+.|.+... .-.+|..-+.||.+.+|+-..-.... .+.. .-.. ..
T Consensus 115 ~~~~L~~~y-eh~l~~~a~nm~~G~Fgg~~---------~~~~IcVQS~DG~L~~feqe~~~f~~-~lp~-~llP---gP 179 (418)
T PF14727_consen 115 NQYQLELIY-EHSLQRTAYNMCCGPFGGVK---------GRDFICVQSMDGSLSFFEQESFAFSR-FLPD-FLLP---GP 179 (418)
T ss_pred cEEEEEEEE-EEecccceeEEEEEECCCCC---------CceEEEEEecCceEEEEeCCcEEEEE-EcCC-CCCC---cC
Confidence 2222211 2322 22333344433110 12567778999999999855321110 0111 1123 34
Q ss_pred EEeeCCCCCCccEEEEEecCCeEEEEEec
Q 022111 215 VAWAPNLGLPKSTIASASQDGTVVIWTCA 243 (302)
Q Consensus 215 v~~~p~~~~~~~~l~s~s~D~~i~iwd~~ 243 (302)
+.|+|.. +.|++++.+..+..|...
T Consensus 180 l~Y~~~t----Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 180 LCYCPRT----DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEeecC----CEEEEecCceeEEEecHH
Confidence 6677763 679999999999999764
No 417
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=66.31 E-value=0.71 Score=41.85 Aligned_cols=131 Identities=19% Similarity=0.269 Sum_probs=79.8
Q ss_pred EEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCE-EEEEeCCCeEEEEEcCCCCceeE
Q 022111 16 DVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSI-LASCSYDGQVIIWKEGNQNDWTQ 94 (302)
Q Consensus 16 ~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~D~~i~iwd~~~~~~~~~ 94 (302)
...|.+.+.-++.++.+..+..||-.. +....+ .-.+....++|.- +++. ++.+-..+.+-+||+++.... .
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag---q~~le~-n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eytq-q 111 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG---QVILEL-NPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYTQ-Q 111 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc---ceeccc-CCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhHH-H
Confidence 456778887799999999999998643 222222 2344555677743 3554 455667788999998654321 1
Q ss_pred EEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeeccc-CCCCeEEEEeCCCC
Q 022111 95 AHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQA-HPVGVTSVSWAPAM 161 (302)
Q Consensus 95 ~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 161 (302)
+ .+.+ +..-.=+.|+|- +..++.|-..+++.+|....... . +..+ |...+++++|.+..
T Consensus 112 L-E~gg-~~s~sll~wsKg--~~el~ig~~~gn~viynhgtsR~---i-iv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 112 L-ESGG-TSSKSLLAWSKG--TPELVIGNNAGNIVIYNHGTSRR---I-IVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred H-hccC-cchHHHHhhccC--CccccccccccceEEEeccchhh---h-hhhcccccceeEEEecccc
Confidence 1 1111 111122567775 44677788889999997653221 1 1124 77788888887753
No 418
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=65.71 E-value=33 Score=23.52 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=23.2
Q ss_pred cEEEEEEccCCCEEEEecCC--ceEEeeecC
Q 022111 260 PVWSVSWSLTGNLLAVADAN--NVTLWKEAV 288 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~~d--~i~~w~~~~ 288 (302)
....|.++|++++|.+++.- .|++++.++
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 35688999999999888654 799998764
No 419
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.52 E-value=18 Score=24.92 Aligned_cols=54 Identities=15% Similarity=0.141 Sum_probs=29.4
Q ss_pred EEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCCceEEee
Q 022111 228 IASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANNVTLWK 285 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d~i~~w~ 285 (302)
++.+..+|.+--||..+.. ..++.+.=.-...|+++||+.+|+++--...+|.+
T Consensus 30 ~le~~~~GRll~ydp~t~~----~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~r 83 (89)
T PF03088_consen 30 LLEGRPTGRLLRYDPSTKE----TTVLLDGLYFPNGVALSPDESFVLVAETGRYRILR 83 (89)
T ss_dssp HHHT---EEEEEEETTTTE----EEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred eecCCCCcCEEEEECCCCe----EEEehhCCCccCeEEEcCCCCEEEEEeccCceEEE
Confidence 3344456666677766532 12222211246789999999999888555555544
No 420
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.36 E-value=89 Score=26.88 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=36.9
Q ss_pred EEccCCCEEEEeeCC-----CcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEE
Q 022111 18 AMDFYGKRLATASSD-----SSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASC 75 (302)
Q Consensus 18 ~~s~~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~ 75 (302)
+||+||++|.+.-.| |.|-|||.... .+.+..+..|.-.--.+.+.++ |..|+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~D--Grtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMAD--GRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEecC--CcEEEEe
Confidence 589999999876544 56889998643 4556666666544455667653 7776654
No 421
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=65.26 E-value=8.4 Score=37.97 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=48.3
Q ss_pred cCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCC---------CCCCEEEEEeCCCeEEEEEcC--CC
Q 022111 21 FYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHP---------KFGSILASCSYDGQVIIWKEG--NQ 89 (302)
Q Consensus 21 ~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~---------~~~~~l~s~s~D~~i~iwd~~--~~ 89 (302)
++.-++..+-.+++++|..+++... ..+.+|+..+..++|... .||+.+|.++.||.+++|-+. ..
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~ 269 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGK 269 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecc
Confidence 3445666667889999987754221 234567777766654210 148889999999999988652 11
Q ss_pred CceeEEEEecCCC
Q 022111 90 NDWTQAHTFNDHK 102 (302)
Q Consensus 90 ~~~~~~~~~~~h~ 102 (302)
....+.+..+.|.
T Consensus 270 ~~~rclhewkphd 282 (1283)
T KOG1916|consen 270 IVHRCLHEWKPHD 282 (1283)
T ss_pred ccHhhhhccCCCC
Confidence 1123445555566
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.23 E-value=96 Score=27.19 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=39.7
Q ss_pred CceeEEEeeCCCC---CCccEEEEEecCCeEEEEEeccCCcce-eeeeeccCCCcEEEEEEccCCCEEEEecCC-ce
Q 022111 210 DWVRSVAWAPNLG---LPKSTIASASQDGTVVIWTCAKEGEQW-EGRVLKDFKTPVWSVSWSLTGNLLAVADAN-NV 281 (302)
Q Consensus 210 ~~v~~v~~~p~~~---~~~~~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~la~~~~d-~i 281 (302)
..+..+.|.+... +.+.+|++.-..+.|....+....... ...++.++...+..+++.|||.++++.+.+ .|
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 4456666654322 234555555555666666664332111 123334555689999999999998888755 44
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=64.46 E-value=90 Score=27.77 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=13.9
Q ss_pred cEEEEEEccCCCEEEEec
Q 022111 260 PVWSVSWSLTGNLLAVAD 277 (302)
Q Consensus 260 ~v~~~~~spdg~~la~~~ 277 (302)
....++|.|||++.++-+
T Consensus 125 ~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cccCceECCCCCEEEecc
Confidence 367899999998776554
No 424
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=64.27 E-value=89 Score=32.28 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=63.2
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCC
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGN 88 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~ 88 (302)
..+++|..+| .-+| +|++ +...+|.||++++...-.-..|..-.-.|.++.. -.++|..|..=+.|.+.....
T Consensus 1095 E~KGtVsavc-eV~G-~l~~-~~GqKI~v~~l~r~~~ligVaFiD~~~yv~s~~~----vknlIl~gDV~ksisfl~fqe 1167 (1366)
T KOG1896|consen 1095 EQKGTVSAVC-EVRG-HLLS-SQGQKIIVRKLDRDSELIGVAFIDLPLYVHSMKV----VKNLILAGDVMKSISFLGFQE 1167 (1366)
T ss_pred hcccceEEEE-Eecc-EEEE-ccCcEEEEEEeccCCcceeeEEeccceeEEehhh----hhhheehhhhhhceEEEEEcc
Confidence 3456777665 5567 5555 4577899999954332111122211112222221 134555665555555554433
Q ss_pred CCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 89 QNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 89 ~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
......+..-..-.-.+.++.|--|.....++.++.+++|.+|--.
T Consensus 1168 ep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1168 EPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred CceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 2110011111112345778888767556679999999999998554
No 425
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=64.20 E-value=93 Score=26.67 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=43.3
Q ss_pred ccccceeEEEEccCCCEEEEee------CCCcEEEEeecCCCceEEEEecC-----cccCeEEEEeeCCCCCCEEEEEe-
Q 022111 9 GHEDTVHDVAMDFYGKRLATAS------SDSSIKIIGLSNSASQHLATLKG-----HRGPVWQVAWAHPKFGSILASCS- 76 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~------~d~~v~lw~~~~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~s- 76 (302)
+-++.|+++.|..+.+.+++|. ....+..||....... .+.+ -.++|..+.+...+..++.+.|.
T Consensus 34 ~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~---~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~ 110 (281)
T PF12768_consen 34 GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS---SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS 110 (281)
T ss_pred CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee---ecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence 3467899999986666666554 3556778888654432 2322 23678888875433344554443
Q ss_pred CCC--eEEEEE
Q 022111 77 YDG--QVIIWK 85 (302)
Q Consensus 77 ~D~--~i~iwd 85 (302)
.++ .|.-||
T Consensus 111 ~~g~~~l~~~d 121 (281)
T PF12768_consen 111 ANGSTFLMKYD 121 (281)
T ss_pred cCCCceEEEEc
Confidence 333 355553
No 426
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=63.70 E-value=19 Score=18.65 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=19.6
Q ss_pred CCeeEEEecCCCCCcEEEEEecCCcEEEE
Q 022111 103 SSVNSIAWAPHELGLSLACGSSDGNISVF 131 (302)
Q Consensus 103 ~~i~~l~~~pd~~~~~l~sg~~d~~v~~~ 131 (302)
+.|.+++..+. +++.+..-+.+|+|
T Consensus 2 E~i~aia~g~~----~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDS----WVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCC----EEEEEeCCCeEEec
Confidence 45788888753 78888888999987
No 427
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=62.69 E-value=1.2e+02 Score=27.27 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=100.0
Q ss_pred EEEEccCCC-EEEEeeCCCcEEEEeecCCCceEEEEe-cCcccCeEEEEeeCCCCCCEEEEEe--CCCeEEEEEcCCCCc
Q 022111 16 DVAMDFYGK-RLATASSDSSIKIIGLSNSASQHLATL-KGHRGPVWQVAWAHPKFGSILASCS--YDGQVIIWKEGNQND 91 (302)
Q Consensus 16 ~~~~s~~~~-~l~s~~~d~~v~lw~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s--~D~~i~iwd~~~~~~ 91 (302)
.+.+++.+. ..+....+..|.+.|..... ..... .+. .-..+.+.++ ...+.++-. .++++-+.|..+..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~~vG~--~P~~~~~~~~-~~~vYV~n~~~~~~~vsvid~~t~~- 151 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLGSIPVGL--GPVGLAVDPD-GKYVYVANAGNGNNTVSVIDAATNK- 151 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccc--eeeEeeecc--CCceEEECCC-CCEEEEEecccCCceEEEEeCCCCe-
Confidence 456777776 55555556889998854322 22221 122 2346777654 234444444 36777777766543
Q ss_pred eeEEEEecCCCCCeeEEEecCCCCCc-EEEEEecCCcEEEEEecCCCCeeeeee--cccCCCCeEEEEeCCCCCCCceee
Q 022111 92 WTQAHTFNDHKSSVNSIAWAPHELGL-SLACGSSDGNISVFTATADGGWDTTRI--DQAHPVGVTSVSWAPAMAPGALVG 168 (302)
Q Consensus 92 ~~~~~~~~~h~~~i~~l~~~pd~~~~-~l~sg~~d~~v~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~ 168 (302)
...+...-..+ ..+++.|+ |. .+++-..++.+.+.+......+. ... ...-...-..+.++|++
T Consensus 152 --~~~~~~vG~~P-~~~a~~p~--g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g------- 218 (381)
T COG3391 152 --VTATIPVGNTP-TGVAVDPD--GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDG------- 218 (381)
T ss_pred --EEEEEecCCCc-ceEEECCC--CCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCC-------
Confidence 23333222334 88899998 44 34444578889888854321111 000 00001111334555543
Q ss_pred cccCCCceeEEEeeCC--CcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 169 LGLLDPVQKLASCGCD--NTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 169 ~~~~~~~~~l~s~~~D--~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
....++...+ +.+...|..++..... ....+-. .-..+..+|++. ...+.-+..+.+.+-|...
T Consensus 219 ------~~~yV~~~~~~~~~v~~id~~~~~v~~~--~~~~~~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 219 ------NRVYVANDGSGSNNVLKIDTATGNVTAT--DLPVGSG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ------CEEEEEeccCCCceEEEEeCCCceEEEe--ccccccC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCC
Confidence 2234444333 5777777765421100 0001111 345678889862 2333334567788887654
No 428
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=62.37 E-value=57 Score=32.19 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=78.8
Q ss_pred EEEEEeCCCeEEEEEcCCCCcee-EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc--c
Q 022111 71 ILASCSYDGQVIIWKEGNQNDWT-QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ--A 147 (302)
Q Consensus 71 ~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~--~ 147 (302)
.+..++.++.+-|+.-....... ..+.+..-...+.++.+++. .+..|..|+++..|-....+.|+...-.. .
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~----Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~ 624 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG----SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPT 624 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc----ccccCccCCccccccCCCCCCCCCCCcccccc
Confidence 46788889999998643111101 11122233456777877763 47777888888887554444443221100 1
Q ss_pred CCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccE
Q 022111 148 HPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKST 227 (302)
Q Consensus 148 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 227 (302)
-..+|.++++.. -++-++.||.|.++...+.....+ ......|...|+++.+.-++ .
T Consensus 625 g~lPvrsla~~e-----------------d~~was~gG~V~vi~~tt~~~~~~-leahqee~~~Vthm~~~~~g-----V 681 (925)
T KOG3522|consen 625 GSLPVRSLAFQE-----------------DFVWASEGGCVHVIPSTTFIRSWD-LEAHQEEAHSVTHMLYLDNG-----V 681 (925)
T ss_pred CCccccchhhhh-----------------ceeeeecCCceEEEechhccccch-hHHHHhhcceEEEEEeeCCc-----e
Confidence 122444444332 245667789999998765421111 11223455668888876543 3
Q ss_pred EEEEecCCeEEEEEec
Q 022111 228 IASASQDGTVVIWTCA 243 (302)
Q Consensus 228 l~s~s~D~~i~iwd~~ 243 (302)
.++-...-.++.++..
T Consensus 682 wvafasG~~~rlfhte 697 (925)
T KOG3522|consen 682 WVAFASGDEERLFHTE 697 (925)
T ss_pred EEEEcCCCEEEEeccc
Confidence 4444444456666543
No 429
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=60.80 E-value=1.2e+02 Score=26.78 Aligned_cols=55 Identities=11% Similarity=0.187 Sum_probs=34.2
Q ss_pred cEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEE-EeCCCeEEEEEcCCCC
Q 022111 34 SIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILAS-CSYDGQVIIWKEGNQN 90 (302)
Q Consensus 34 ~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s-~s~D~~i~iwd~~~~~ 90 (302)
-=.||-++..+.+.+..+.. ..++.+|+.+.+. -.+|++ ...++.+.+||..+++
T Consensus 268 gteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~-~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD-KPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS-S-EEEEEETTTTEEEEEETTT--
T ss_pred ceEEEEEECCCCeEEEEEeC-CCccceEEEccCC-CcEEEEEcCCCCeEEEEeCcCCc
Confidence 34566655555666666642 3457788887653 335544 4568999999998764
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=60.01 E-value=1e+02 Score=25.75 Aligned_cols=92 Identities=10% Similarity=0.055 Sum_probs=56.9
Q ss_pred eEEEEccCCCEE-EEeeCCCcEEEEeecCCCc-----eEEEEecCc---ccCe-EEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 15 HDVAMDFYGKRL-ATASSDSSIKIIGLSNSAS-----QHLATLKGH---RGPV-WQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 15 ~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~-----~~~~~~~~h---~~~v-~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
+.++|+.+.+.+ .+-+.+-+|.-||.+-..+ +.+..++.. +... -.++. +.+|++.+++-..++|...
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I--D~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI--DTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE--ccCCcEEEEEecCcEEEEE
Confidence 347787776544 5666777787787532221 223333210 0001 12333 2358888888888999999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEec
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWA 111 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~ 111 (302)
|+.+++ .+.++......|++++|-
T Consensus 239 dp~tGK---~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 239 DPTTGK---ILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCCc---EEEEEEcCCCceEEEEec
Confidence 987764 566677778999999996
No 431
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=59.10 E-value=29 Score=19.15 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=16.6
Q ss_pred CCceeEEEeeCCCCCCccEEEEEecC--CeEEEE
Q 022111 209 SDWVRSVAWAPNLGLPKSTIASASQD--GTVVIW 240 (302)
Q Consensus 209 ~~~v~~v~~~p~~~~~~~~l~s~s~D--~~i~iw 240 (302)
........|+||+ ...+.++..+ |...||
T Consensus 8 ~~~~~~p~~SpDG---k~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDG---KYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTS---SEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCC---CEEEEEecCCCCCCcCEE
Confidence 3446788999997 2344444445 555555
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=59.00 E-value=1.3e+02 Score=26.49 Aligned_cols=169 Identities=13% Similarity=0.245 Sum_probs=82.4
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCC-CCeeeeeecccCCCCeEEEEeCCCCCCCce
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATAD-GGWDTTRIDQAHPVGVTSVSWAPAMAPGAL 166 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 166 (302)
.+..|..+.. .....+.++.+.|+ +..++.+ ..|.+.. ..... ..|.... ..-...+..+.+.+++
T Consensus 160 gG~tW~~~~~--~~~g~~~~i~~~~~--g~~v~~g-~~G~i~~-s~~~gg~tW~~~~--~~~~~~l~~i~~~~~g----- 226 (334)
T PRK13684 160 GGKNWEALVE--DAAGVVRNLRRSPD--GKYVAVS-SRGNFYS-TWEPGQTAWTPHQ--RNSSRRLQSMGFQPDG----- 226 (334)
T ss_pred CCCCceeCcC--CCcceEEEEEECCC--CeEEEEe-CCceEEE-EcCCCCCeEEEee--CCCcccceeeeEcCCC-----
Confidence 3445654332 23467889999886 4455554 4444432 11112 2343221 1223345666665532
Q ss_pred eecccCCCceeEEEeeCCCcEEEEEEecC-ccccccccccccCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccC
Q 022111 167 VGLGLLDPVQKLASCGCDNTVKVWKMYNG-IWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 167 ~~~~~~~~~~~l~s~~~D~~v~iwd~~~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~ 245 (302)
..+ ..+..+.+++=....+ .|+...... ..-...+.++.+.|++ . +..++.+|.+.. ....
T Consensus 227 ---------~~~-~vg~~G~~~~~s~d~G~sW~~~~~~~-~~~~~~l~~v~~~~~~----~-~~~~G~~G~v~~--S~d~ 288 (334)
T PRK13684 227 ---------NLW-MLARGGQIRFNDPDDLESWSKPIIPE-ITNGYGYLDLAYRTPG----E-IWAGGGNGTLLV--SKDG 288 (334)
T ss_pred ---------CEE-EEecCCEEEEccCCCCCccccccCCc-cccccceeeEEEcCCC----C-EEEEcCCCeEEE--eCCC
Confidence 333 3345565543112222 222100000 0012347788898863 3 555556776543 2233
Q ss_pred Ccceeeeee-ccCCCcEEEEEEccCCCEEEEecCCceEEeeec
Q 022111 246 GEQWEGRVL-KDFKTPVWSVSWSLTGNLLAVADANNVTLWKEA 287 (302)
Q Consensus 246 ~~~~~~~~~-~~~~~~v~~~~~spdg~~la~~~~d~i~~w~~~ 287 (302)
...|..... .......+.+.|-.+++.+++|....|.-|+..
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 334542211 223346888888888888888865567767653
No 433
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=58.47 E-value=2e+02 Score=28.65 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=51.6
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcce--eeeeeccCC----------CcEEEEEEccCCCEEEEecC
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQW--EGRVLKDFK----------TPVWSVSWSLTGNLLAVADA 278 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~--~~~~~~~~~----------~~v~~~~~spdg~~la~~~~ 278 (302)
+..+|+|+|.. ..+||.....|+..||++....... ......... +.-..+.|.++-+.|++.++
T Consensus 147 ~~aDv~FnP~~---~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 147 PHADVAFNPWD---QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred ccceEEeccCc---cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 46789999974 4689999999999999992211100 001111111 12336889998889999988
Q ss_pred CceEEeeecCC
Q 022111 279 NNVTLWKEAVD 289 (302)
Q Consensus 279 d~i~~w~~~~~ 289 (302)
.++.++++..+
T Consensus 224 ~~l~~~d~~~~ 234 (765)
T PF10214_consen 224 SKLMLIDFESN 234 (765)
T ss_pred CceEEEECCCC
Confidence 89999997543
No 434
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=58.14 E-value=1.4e+02 Score=26.83 Aligned_cols=137 Identities=9% Similarity=0.102 Sum_probs=58.0
Q ss_pred EEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCe----------------
Q 022111 17 VAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQ---------------- 80 (302)
Q Consensus 17 ~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~---------------- 80 (302)
..++++.+.++=...+..++-.|+.+.....+..+. +.-+-...|..+.++.+++-.-..+.
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 445666666543444556666676654433444443 33333345543344666544322111
Q ss_pred ------EEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEE---ecCCc-EEEEEecCCCCeeeeeec-ccCC
Q 022111 81 ------VIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACG---SSDGN-ISVFTATADGGWDTTRID-QAHP 149 (302)
Q Consensus 81 ------i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg---~~d~~-v~~~~~~~~~~~~~~~~~-~~h~ 149 (302)
|.--|+.++ ..+++-.-+.-+.-+.|+|.++ .+|+-| -++.. -|+|-+...+.- ...+. +.-.
T Consensus 164 a~p~~~i~~idl~tG----~~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~ 237 (386)
T PF14583_consen 164 ARPHCRIFTIDLKTG----ERKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEG 237 (386)
T ss_dssp C---EEEEEEETTT------EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS----EESS---TT
T ss_pred hCCCceEEEEECCCC----ceeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCC
Confidence 111122221 1111111234566778898754 355554 34443 477877755431 11211 1112
Q ss_pred CCeEEEEeCCCC
Q 022111 150 VGVTSVSWAPAM 161 (302)
Q Consensus 150 ~~v~~~~~~~~~ 161 (302)
..+..--|.|++
T Consensus 238 e~~gHEfw~~DG 249 (386)
T PF14583_consen 238 ESVGHEFWVPDG 249 (386)
T ss_dssp EEEEEEEE-TTS
T ss_pred cccccccccCCC
Confidence 346667788875
No 435
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=55.84 E-value=85 Score=29.66 Aligned_cols=66 Identities=14% Similarity=0.303 Sum_probs=36.4
Q ss_pred cEEEEEecCCeEEEEEecc---CCcceeeeee---------ccC-----------CCcEEEEEEcc----CCCEEEEecC
Q 022111 226 STIASASQDGTVVIWTCAK---EGEQWEGRVL---------KDF-----------KTPVWSVSWSL----TGNLLAVADA 278 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~---~~~~~~~~~~---------~~~-----------~~~v~~~~~sp----dg~~la~~~~ 278 (302)
..++.+..||.|-...... ....|..... .+. ...+.+++.++ +..+|.+.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 5677888888887777654 2222221111 110 12355566666 6688888888
Q ss_pred C-ceEEeeecCCce
Q 022111 279 N-NVTLWKEAVDGE 291 (302)
Q Consensus 279 d-~i~~w~~~~~~~ 291 (302)
| .+|+|+......
T Consensus 239 D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 239 DHTLRIWSLETGQC 252 (547)
T ss_dssp TSEEEEEETTTTCE
T ss_pred CCeEEEEECCCCeE
Confidence 8 799999865444
No 436
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=55.48 E-value=1.7e+02 Score=27.01 Aligned_cols=54 Identities=9% Similarity=0.009 Sum_probs=33.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEec-----CcccCeEEEEeeCC
Q 022111 13 TVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLK-----GHRGPVWQVAWAHP 66 (302)
Q Consensus 13 ~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-----~h~~~v~~v~~~~~ 66 (302)
.-+.++|.||+++|++--..|.|++++........+..+. .-.+....|++.|+
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3467899999987776544699998865332222222111 12456788999764
No 437
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=51.22 E-value=34 Score=17.56 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=11.7
Q ss_pred EEEEEEccCCCEEEEecCC
Q 022111 261 VWSVSWSLTGNLLAVADAN 279 (302)
Q Consensus 261 v~~~~~spdg~~la~~~~d 279 (302)
..+++.+++|+++++=..+
T Consensus 4 P~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEEETTSEEEEEECCC
T ss_pred CcEEEEeCCCCEEEEECCC
Confidence 4567777777666554333
No 438
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=1.5e+02 Score=27.92 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=44.9
Q ss_pred eEEEEeeCCCCCCEEEEEeCCCeEEEEEc---------CCCCceeEEEEe-------c-CCCCCeeEEEecCCC-CCcEE
Q 022111 58 VWQVAWAHPKFGSILASCSYDGQVIIWKE---------GNQNDWTQAHTF-------N-DHKSSVNSIAWAPHE-LGLSL 119 (302)
Q Consensus 58 v~~v~~~~~~~~~~l~s~s~D~~i~iwd~---------~~~~~~~~~~~~-------~-~h~~~i~~l~~~pd~-~~~~l 119 (302)
|..|..++ .|..++-.+.+|.+.++=. ++++......++ . ...-.+..++|+|+. ....|
T Consensus 106 V~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 106 VYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 44454443 3778888888887776521 122111111111 1 112345678899985 12357
Q ss_pred EEEecCCcEEEEEecCCC
Q 022111 120 ACGSSDGNISVFTATADG 137 (302)
Q Consensus 120 ~sg~~d~~v~~~~~~~~~ 137 (302)
..-+.|+.+++|+.++..
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 777889999999987543
No 439
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=49.05 E-value=2.2e+02 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=25.7
Q ss_pred ceeEEEeeCCCcEEEEEEecCccc-ccccccc--ccCCCceeEEEeeCCC
Q 022111 175 VQKLASCGCDNTVKVWKMYNGIWK-MDCFPAL--QMHSDWVRSVAWAPNL 221 (302)
Q Consensus 175 ~~~l~s~~~D~~v~iwd~~~~~~~-~~~~~~~--~~h~~~v~~v~~~p~~ 221 (302)
+..|++--..|.|++++..+.... ..-+..+ ....+....|+++|+.
T Consensus 41 G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 41 NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 355665544688888875433211 1111111 1125668899999985
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.15 E-value=3.6e+02 Score=28.47 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=49.7
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCC------CEEEEEeCCCeEEEEEcCCCCceeEE-
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFG------SILASCSYDGQVIIWKEGNQNDWTQA- 95 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~------~~l~s~s~D~~i~iwd~~~~~~~~~~- 95 (302)
++.-+| .|+.+.+|+++... ....+.+-+..|..|....|+-| ++|...+.-..|.|+-+.-.......
T Consensus 91 ~RaWiT--iDn~L~lWny~~~~--e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 91 GRAWIT--IDNNLFLWNYESDN--ELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred cceEEE--eCCeEEEEEcCCCC--ccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc
Confidence 444443 68899999997632 23445555666777766554322 12333333445667654211100001
Q ss_pred -----EEecCCCCCeeEEEecCCCCCcEEEEEecC
Q 022111 96 -----HTFNDHKSSVNSIAWAPHELGLSLACGSSD 125 (302)
Q Consensus 96 -----~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d 125 (302)
.++....-.|+|+.... +|..+.+|-+|
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~--nGRIF~~G~dg 199 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTE--NGRIFFAGRDG 199 (1311)
T ss_pred ccccceeeecCCceEEEEEecc--CCcEEEeecCC
Confidence 12222345677777433 47766666555
No 441
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=43.93 E-value=10 Score=18.86 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=5.9
Q ss_pred EEccCCCE
Q 022111 265 SWSLTGNL 272 (302)
Q Consensus 265 ~~spdg~~ 272 (302)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 37888875
No 442
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=41.81 E-value=2.3e+02 Score=24.47 Aligned_cols=153 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCEEEEeeCC-----CcEEEEeecCCCc----eEEEEecCcccCeEEEEeeCCCCCCEEEEEeC-----CCeEEEEEcC
Q 022111 22 YGKRLATASSD-----SSIKIIGLSNSAS----QHLATLKGHRGPVWQVAWAHPKFGSILASCSY-----DGQVIIWKEG 87 (302)
Q Consensus 22 ~~~~l~s~~~d-----~~v~lw~~~~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----D~~i~iwd~~ 87 (302)
+++.++.||.+ ..+..+|+..... ..+..+...........+. +++.+.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~----~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD----GTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC----CEEEEEeCcCCCccCceEEEEcCC
Q ss_pred CCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC----CcEEEEEecCCCCeeeeee-----cccCCCCeEEEEeC
Q 022111 88 NQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD----GNISVFTATADGGWDTTRI-----DQAHPVGVTSVSWA 158 (302)
Q Consensus 88 ~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d----~~v~~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~ 158 (302)
+ +.|..+..+. ...+....+...+ +.+.+.|+.+ ..+..||.. ...|..... ..........+...
T Consensus 148 ~-~~W~~~~~~p-~~~r~~~~~~~~~--~~iYv~GG~~~~~~~~~~~yd~~-~~~W~~~~~~~~~~~p~~~~~~~~~~~~ 222 (323)
T TIGR03548 148 T-QEWFELPDFP-GEPRVQPVCVKLQ--NELYVFGGGSNIAYTDGYKYSPK-KNQWQKVADPTTDSEPISLLGAASIKIN 222 (323)
T ss_pred C-CCeeECCCCC-CCCCCcceEEEEC--CEEEEEcCCCCccccceEEEecC-CCeeEECCCCCCCCCceeccceeEEEEC
Q ss_pred CCCCCCceeecccCCCceeEEEeeCC-------------------------------------CcEEEEEEecCccc
Q 022111 159 PAMAPGALVGLGLLDPVQKLASCGCD-------------------------------------NTVKVWKMYNGIWK 198 (302)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~l~s~~~D-------------------------------------~~v~iwd~~~~~~~ 198 (302)
.. ..++.||.+ +.+.+||+.+..|.
T Consensus 223 ~~---------------~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 284 (323)
T TIGR03548 223 ES---------------LLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWK 284 (323)
T ss_pred CC---------------EEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeee
No 443
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.66 E-value=61 Score=22.35 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=20.3
Q ss_pred EEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCC
Q 022111 74 SCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHEL 115 (302)
Q Consensus 74 s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~ 115 (302)
.+..+|.+.-||+.++.. ..+...-...+.|+++||+.
T Consensus 32 e~~~~GRll~ydp~t~~~----~vl~~~L~fpNGVals~d~~ 69 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKET----TVLLDGLYFPNGVALSPDES 69 (89)
T ss_dssp HT---EEEEEEETTTTEE----EEEEEEESSEEEEEE-TTSS
T ss_pred cCCCCcCEEEEECCCCeE----EEehhCCCccCeEEEcCCCC
Confidence 344566777888876532 22222233568999999854
No 444
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.71 E-value=2.5e+02 Score=24.30 Aligned_cols=119 Identities=13% Similarity=0.236 Sum_probs=66.5
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 9 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 9 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
|-+..|.++.|+|+.+.|.+......-.++ ++. .+..+.++ .+-. .--.|.|..+ +.++++--.++++.+.-+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE-lt~-~GdlirtiPL~g~~-DpE~Ieyig~--n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE-LTK-EGDLIRTIPLTGFS-DPETIEYIGG--NQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEE-Eec-CCceEEEecccccC-ChhHeEEecC--CEEEEEehhcceEEEEEE
Confidence 444558999999999988877766555454 321 13344433 2311 1234666542 555555556777777765
Q ss_pred CCCCcee-------EEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEec
Q 022111 87 GNQNDWT-------QAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTAT 134 (302)
Q Consensus 87 ~~~~~~~-------~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~ 134 (302)
....... ++......+.-...++|.|.+. .|..+=.-+-+.||...
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~--~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH--RLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCc--eEEEEEccCCcEEEEEe
Confidence 4332111 1112222245567899998743 55555556667776554
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=38.09 E-value=6.2 Score=36.09 Aligned_cols=138 Identities=12% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH 148 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h 148 (302)
.+ ++.++.+-.+..||-.... ..... ..+.--.++|..+. ...++.+-..+.+.+||+.+.... +++.+.
T Consensus 47 ~n-lavaca~tiv~~YD~agq~----~le~n-~tg~aldm~wDkeg-dvlavlAek~~piylwd~n~eytq---qLE~gg 116 (615)
T KOG2247|consen 47 HN-LAVACANTIVIYYDKAGQV----ILELN-PTGKALDMAWDKEG-DVLAVLAEKTGPIYLWDVNSEYTQ---QLESGG 116 (615)
T ss_pred Cc-eehhhhhhHHHhhhhhcce----ecccC-CchhHhhhhhcccc-chhhhhhhcCCCeeechhhhhhHH---HHhccC
Confidence 44 6677788889999854321 11111 23334455665532 234555566789999998754321 111111
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEEeeCCCCCCccEE
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTI 228 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 228 (302)
...-.=+.|++.. ..++.+-..+.+.|++..... .......|...+.++++.+. ++.
T Consensus 117 ~~s~sll~wsKg~--------------~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lE-----d~v 173 (615)
T KOG2247|consen 117 TSSKSLLAWSKGT--------------PELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLE-----DYV 173 (615)
T ss_pred cchHHHHhhccCC--------------ccccccccccceEEEeccchh----hhhhhcccccceeEEEeccc-----cee
Confidence 1111125566532 345555677889999876542 12222338888999999986 467
Q ss_pred EEEecCCeEEE
Q 022111 229 ASASQDGTVVI 239 (302)
Q Consensus 229 ~s~s~D~~i~i 239 (302)
+.++.|..+.+
T Consensus 174 il~dcd~~L~v 184 (615)
T KOG2247|consen 174 ILCDCDNTLSV 184 (615)
T ss_pred eecCcHHHHHH
Confidence 77777765544
No 446
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=37.26 E-value=91 Score=30.62 Aligned_cols=32 Identities=16% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 209 SDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 209 ~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
...+.++.-+|-+ ..++++..||+|++|+...
T Consensus 14 ~e~~~aiqshp~~----~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGG----QSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred cceeeeeeecCCC----ceEEEEecCCcEEEEeecc
Confidence 4457788888874 7799999999999999754
No 447
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.88 E-value=2.7e+02 Score=23.78 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=57.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecccC
Q 022111 69 GSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAH 148 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h 148 (302)
.++++.||..+.++--|..+++.. -+++ -..+|.+-+.- -|..++.|...+.+++-+..++......... .
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~--We~i--lg~RiE~sa~v---vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~ 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI--WEAI--LGVRIECSAIV---VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--E 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE--eehh--hCceeeeeeEE---ECCEEEEEEccCcEEEEEecchhheeeeeeh--h
Confidence 456677777777766666555321 0111 12333322221 1457999999999988887765332222211 1
Q ss_pred CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecC
Q 022111 149 PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNG 195 (302)
Q Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~ 195 (302)
..++... ..+ ++..+..++.|++++..|.++.
T Consensus 94 ~vk~~a~-~d~--------------~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 94 TVKVRAQ-CDF--------------DGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred hhccceE-EcC--------------CCceEEEecCCCcEEEeccccc
Confidence 1222211 122 2467888999999999998764
No 448
>PLN02153 epithiospecifier protein
Probab=35.53 E-value=3e+02 Score=23.99 Aligned_cols=156 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCEEEEeeCC-----CcEEEEeecCCCceEEEEecC---cccCeEEEEeeCCCCCCEEEEEeCC-----------CeEE
Q 022111 22 YGKRLATASSD-----SSIKIIGLSNSASQHLATLKG---HRGPVWQVAWAHPKFGSILASCSYD-----------GQVI 82 (302)
Q Consensus 22 ~~~~l~s~~~d-----~~v~lw~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~~~l~s~s~D-----------~~i~ 82 (302)
++++++.||.+ ..+.+||........+..+.. ........+.... +++++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--NHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--CEEEEECCccCCCccCCCcccceEE
Q ss_pred EEEcCCCCceeEEEEec---CCCCCeeEEEecCCCCCcEEEEEecC-------------CcEEEEEecCCCCeeeeeecc
Q 022111 83 IWKEGNQNDWTQAHTFN---DHKSSVNSIAWAPHELGLSLACGSSD-------------GNISVFTATADGGWDTTRIDQ 146 (302)
Q Consensus 83 iwd~~~~~~~~~~~~~~---~h~~~i~~l~~~pd~~~~~l~sg~~d-------------~~v~~~~~~~~~~~~~~~~~~ 146 (302)
+||+.+ ..|..+.... ........+.+. +.+.+.|+.+ +.+.+||.. ...|.......
T Consensus 163 ~yd~~~-~~W~~l~~~~~~~~~r~~~~~~~~~----~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~-~~~W~~~~~~g 236 (341)
T PLN02153 163 AYNIAD-GKWVQLPDPGENFEKRGGAGFAVVQ----GKIWVVYGFATSILPGGKSDYESNAVQFFDPA-SGKWTEVETTG 236 (341)
T ss_pred EEECCC-CeEeeCCCCCCCCCCCCcceEEEEC----CeEEEEeccccccccCCccceecCceEEEEcC-CCcEEeccccC
Q ss_pred cCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCC--------------CcEEEEEEecCccc
Q 022111 147 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCD--------------NTVKVWKMYNGIWK 198 (302)
Q Consensus 147 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D--------------~~v~iwd~~~~~~~ 198 (302)
.-+..-.......-+ +..++.||.. +.+..+|+.+..|.
T Consensus 237 ~~P~~r~~~~~~~~~-------------~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 237 AKPSARSVFAHAVVG-------------KYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CCCCCcceeeeEEEC-------------CEEEEECcccCCccccccccccccccEEEEEcCccEEE
No 449
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=35.33 E-value=5.6e+02 Score=27.02 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=71.6
Q ss_pred CEEEEee---------CCCcEEEEeecC---CCceE-----EEEe--cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEE
Q 022111 24 KRLATAS---------SDSSIKIIGLSN---SASQH-----LATL--KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIW 84 (302)
Q Consensus 24 ~~l~s~~---------~d~~v~lw~~~~---~~~~~-----~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iw 84 (302)
.+||.|. .-|.+.|+|+-. +++++ ++.+ ..-++.|..+|=. .|. |+++. ...|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~-l~~~~-GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGH-LLSSQ-GQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccE-EEEcc-CcEEEEE
Confidence 4777664 336788998732 12211 1111 3456788888753 254 44543 4579999
Q ss_pred EcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecCCcEEEEEecCCCCeeeeeecc-cCCCCeEEEEeCCCCCC
Q 022111 85 KEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQ-AHPVGVTSVSWAPAMAP 163 (302)
Q Consensus 85 d~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 163 (302)
+++.......+. | ..-++......-- +.+|..|+.-+.|.+.-.... +..+.-+.. ...-.+.+..|--++
T Consensus 1122 ~l~r~~~ligVa-F--iD~~~yv~s~~~v--knlIl~gDV~ksisfl~fqee-p~rlsL~srd~~~l~v~s~EFLVdg-- 1193 (1366)
T KOG1896|consen 1122 KLDRDSELIGVA-F--IDLPLYVHSMKVV--KNLILAGDVMKSISFLGFQEE-PYRLSLLSRDFEPLNVYSTEFLVDG-- 1193 (1366)
T ss_pred EeccCCcceeeE-E--eccceeEEehhhh--hhheehhhhhhceEEEEEccC-ceEEEEeecCCchhhceeeeeEEcC--
Confidence 985443322222 1 1112222211111 335666666666666443322 111111110 112234444443322
Q ss_pred CceeecccCCCceeEEEeeCCCcEEEEEEe
Q 022111 164 GALVGLGLLDPVQKLASCGCDNTVKVWKMY 193 (302)
Q Consensus 164 ~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~ 193 (302)
..-.++.+-.|++|++|--.
T Consensus 1194 ----------~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1194 ----------SNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred ----------CeeEEEEEcCCCcEEEEEeC
Confidence 12357788889999997653
No 450
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=35.12 E-value=2e+02 Score=27.24 Aligned_cols=48 Identities=10% Similarity=0.166 Sum_probs=29.8
Q ss_pred cEEEEEecCCeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEE
Q 022111 226 STIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAV 275 (302)
Q Consensus 226 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 275 (302)
..++.++.||.++.+|.++.+..|..++-..... .=+.|..+|++.++
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a--~P~ty~~~G~qYv~ 520 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVG--PPVTYEQDGKQYVA 520 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeCCCCcee--cCEEEEeCCEEEEE
Confidence 4577788899999999988766665444222211 12445567765543
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=34.81 E-value=3.1e+02 Score=23.95 Aligned_cols=243 Identities=14% Similarity=0.136 Sum_probs=114.0
Q ss_pred eEEEEccCCCEEEEeeCCCcEEEEeec-----CCCceEEEEecC-----cccCeEEEEeeCCC----------CCCEEEE
Q 022111 15 HDVAMDFYGKRLATASSDSSIKIIGLS-----NSASQHLATLKG-----HRGPVWQVAWAHPK----------FGSILAS 74 (302)
Q Consensus 15 ~~~~~s~~~~~l~s~~~d~~v~lw~~~-----~~~~~~~~~~~~-----h~~~v~~v~~~~~~----------~~~~l~s 74 (302)
+.|+++|.+.+-++...-+...+||.. ....+.+.++.. -.+..+.+.|+... ....++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 569999999888888888899999985 111122333331 12345666665311 1124678
Q ss_pred EeCCCeEEEEEcCCCCc-e-eEEEEecC-CCC-CeeEEEecCCCCCc-EEEEEecCCcEEEEEecCCCCeeeeeecccCC
Q 022111 75 CSYDGQVIIWKEGNQND-W-TQAHTFND-HKS-SVNSIAWAPHELGL-SLACGSSDGNISVFTATADGGWDTTRIDQAHP 149 (302)
Q Consensus 75 ~s~D~~i~iwd~~~~~~-~-~~~~~~~~-h~~-~i~~l~~~pd~~~~-~l~sg~~d~~v~~~~~~~~~~~~~~~~~~~h~ 149 (302)
+++||+|.-|...-... . .....+.. ... .-+.+++.+...+. +.++--..++|.+||.. +....+.....
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~----f~~~~~~g~F~ 181 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS----FRPPPLPGSFI 181 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc----cccccCCCCcc
Confidence 89999999997522111 0 01112221 122 33456665432223 33344456788887643 21111110000
Q ss_pred CCeEEEEeCCCCC---CCce-eecccCC-CceeEEEeeCCCcEEEEEEecCcccccccccc--ccCCCceeEEEeeCC--
Q 022111 150 VGVTSVSWAPAMA---PGAL-VGLGLLD-PVQKLASCGCDNTVKVWKMYNGIWKMDCFPAL--QMHSDWVRSVAWAPN-- 220 (302)
Q Consensus 150 ~~v~~~~~~~~~~---~~~~-~~~~~~~-~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~-- 220 (302)
.+-.-.-|.|..- .+.+ +.....+ +...=+.|..-|.|-+||+... .++.+ .+.-..-..|+..|-
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~g~LNaPWG~a~APa~F 256 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASSGRLNAPWGLAIAPESF 256 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccCCcccCCceeeeChhhh
Confidence 1100001111100 0000 0000001 1112233444568888887653 22222 122222234555442
Q ss_pred CCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccCC-----CcEEEEEEcc
Q 022111 221 LGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFK-----TPVWSVSWSL 268 (302)
Q Consensus 221 ~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~-----~~v~~~~~sp 268 (302)
+...+..|+.-=.||+|..||..+.. +...+..... ..+|+++|-.
T Consensus 257 G~~sg~lLVGNFGDG~InaFD~~sG~--~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 257 GSLSGALLVGNFGDGTINAYDPQSGA--QLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCCeEEeecCCceeEEecCCCCc--eeeeecCCCCCeEEecCeEEeeeCC
Confidence 12234555555569999999987532 2233322222 3488999854
No 452
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.27 E-value=3.1e+02 Score=23.77 Aligned_cols=201 Identities=13% Similarity=0.135 Sum_probs=102.6
Q ss_pred cCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEE--ecCCCCCeeEEEecCCCCCcEEEEEecCCcEE
Q 022111 52 KGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHT--FNDHKSSVNSIAWAPHELGLSLACGSSDGNIS 129 (302)
Q Consensus 52 ~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~--~~~h~~~i~~l~~~pd~~~~~l~sg~~d~~v~ 129 (302)
.|-...|.++.|+|+ .+.|++........++=-.++. .+.+ +.+-. -...+.+.-+ +.++++-=.++.+.
T Consensus 82 ~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~Gd---lirtiPL~g~~-DpE~Ieyig~--n~fvi~dER~~~l~ 153 (316)
T COG3204 82 LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEGD---LIRTIPLTGFS-DPETIEYIGG--NQFVIVDERDRALY 153 (316)
T ss_pred ccccccccceeeCCC--cceEEEecCCCceEEEEecCCc---eEEEecccccC-ChhHeEEecC--CEEEEEehhcceEE
Confidence 454556999999875 4556666555555555222222 2222 22211 1234555433 45566655677777
Q ss_pred EEEecCCCCeee-----eeecc-cC-CCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccc
Q 022111 130 VFTATADGGWDT-----TRIDQ-AH-PVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCF 202 (302)
Q Consensus 130 ~~~~~~~~~~~~-----~~~~~-~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~ 202 (302)
++.+..+..... ..+.. .+ ......++|.|.. ..|..+=+-+-++||.......... .
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~--------------~~l~~aKEr~P~~I~~~~~~~~~l~-~ 218 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD--------------HRLFVAKERNPIGIFEVTQSPSSLS-V 218 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC--------------ceEEEEEccCCcEEEEEecCCcccc-c
Confidence 776654432111 11110 11 3356678888754 4555555666677777653321111 0
Q ss_pred cccccCC-------CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeeccC---CC---cEEEEEEccC
Q 022111 203 PALQMHS-------DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDF---KT---PVWSVSWSLT 269 (302)
Q Consensus 203 ~~~~~h~-------~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~---~~---~v~~~~~spd 269 (302)
.....+. .-|.++.|++.. +..++-+-+++.+.-.|...+... ...+.++. .. ..-.++..++
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~---~~LLVLS~ESr~l~Evd~~G~~~~-~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAIT---NSLLVLSDESRRLLEVDLSGEVIE-LLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred ccccCcccccceEeeccccceecCCC---CcEEEEecCCceEEEEecCCCeee-eEEeccCCCCCcccCCCcceeEECCC
Confidence 1111111 236778888764 466777778887777766543210 11111221 11 2345777778
Q ss_pred CCEEEEecCC
Q 022111 270 GNLLAVADAN 279 (302)
Q Consensus 270 g~~la~~~~d 279 (302)
|.+.++.-.+
T Consensus 295 g~lYIvSEPn 304 (316)
T COG3204 295 GNLYIVSEPN 304 (316)
T ss_pred CCEEEEecCC
Confidence 8777776555
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=33.34 E-value=2.7e+02 Score=22.80 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=37.8
Q ss_pred CEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEecC------CcEEEE
Q 022111 70 SILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSD------GNISVF 131 (302)
Q Consensus 70 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~d------~~v~~~ 131 (302)
+.|+.+.....|.+|++... ......+|.. -+.|..+.++.. |.+|+|-=.+ ..+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~-~~~~~~~F~T-v~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE-ECPLLCTFST-VGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC-CCceeEEEcc-hhheeEEEeccc--cceEEEEEeecCCccceEEEEE
Confidence 44444466678999998732 2345556653 378999999875 6788875332 266776
No 454
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=31.97 E-value=3.8e+02 Score=24.01 Aligned_cols=198 Identities=14% Similarity=0.050 Sum_probs=98.1
Q ss_pred EEEeeCCCCCCEEEEEeCCCeEEEEEcCCCCceeEEEEecCCCCCeeEEEecCCCCCcEEEEEec---CCcEEEEEecCC
Q 022111 60 QVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSS---DGNISVFTATAD 136 (302)
Q Consensus 60 ~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~sg~~---d~~v~~~~~~~~ 136 (302)
.+.+++. ..+..++...+..+.+.|..... ..+...- ......+++.|+. ..+..+.. ++++.+.|-.+.
T Consensus 78 ~i~v~~~-~~~vyv~~~~~~~v~vid~~~~~---~~~~~~v-G~~P~~~~~~~~~--~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 78 GVAVNPA-GNKVYVTTGDSNTVSVIDTATNT---VLGSIPV-GLGPVGLAVDPDG--KYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred ceeeCCC-CCeEEEecCCCCeEEEEcCcccc---eeeEeee-ccCCceEEECCCC--CEEEEEecccCCceEEEEeCCCC
Confidence 4555443 23466666667889999865542 2222211 1155788888884 33333333 566666654432
Q ss_pred CCeeeeeecccCCCCeEEEEeCCCCCCCceeecccCCCceeEEEeeCCCcEEEEEEecCccccccccccccCCCceeEEE
Q 022111 137 GGWDTTRIDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVA 216 (302)
Q Consensus 137 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 216 (302)
... .....+ ..+ ..+++.|++ ...+++-..+++|.+.|................-...-..+.
T Consensus 151 ~~~--~~~~vG-~~P-~~~a~~p~g-------------~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~ 213 (381)
T COG3391 151 KVT--ATIPVG-NTP-TGVAVDPDG-------------NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIA 213 (381)
T ss_pred eEE--EEEecC-CCc-ceEEECCCC-------------CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEE
Confidence 211 112111 112 456666653 234555567889999996543211000000011112234678
Q ss_pred eeCCCCCCccEEEEEecC--CeEEEEEeccCCcceeeeeeccCCCcEEEEEEccCCCEEEEecCC--ceEEeee
Q 022111 217 WAPNLGLPKSTIASASQD--GTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADAN--NVTLWKE 286 (302)
Q Consensus 217 ~~p~~~~~~~~l~s~s~D--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~d--~i~~w~~ 286 (302)
++|++. ...++-..+ +.+...|......... ....+.. ....++.+|+|+++-++... .+.+=+.
T Consensus 214 v~~~g~---~~yV~~~~~~~~~v~~id~~~~~v~~~-~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 214 VDPDGN---RVYVANDGSGSNNVLKIDTATGNVTAT-DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ECCCCC---EEEEEeccCCCceEEEEeCCCceEEEe-ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 888862 233443333 5777776654321110 0111111 34568899999888777433 4544443
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=31.83 E-value=94 Score=17.04 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=14.3
Q ss_pred cCCCEEEEecC--CceEEeeecCC
Q 022111 268 LTGNLLAVADA--NNVTLWKEAVD 289 (302)
Q Consensus 268 pdg~~la~~~~--d~i~~w~~~~~ 289 (302)
|++++|.++.. +.|.++|....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~ 24 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN 24 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC
Confidence 57777766644 36888887543
No 456
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=30.57 E-value=5.3e+02 Score=25.27 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred ccceeEEEEccCCCEEEEeeCCCcEEEEeecCC
Q 022111 11 EDTVHDVAMDFYGKRLATASSDSSIKIIGLSNS 43 (302)
Q Consensus 11 ~~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~ 43 (302)
.+.|-.+.|..+++.++..-..|.|.+|+++..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~ 161 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSEN 161 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccc
Confidence 456778889989999999999999999999443
No 457
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.56 E-value=4.1e+02 Score=24.01 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=44.2
Q ss_pred ceeEEEEccCCCEE-EEeeCCCcEEEEeecCCCceEEEEecCcccC-eEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCCC
Q 022111 13 TVHDVAMDFYGKRL-ATASSDSSIKIIGLSNSASQHLATLKGHRGP-VWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN 90 (302)
Q Consensus 13 ~v~~~~~s~~~~~l-~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~-v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~~ 90 (302)
..+.=+|..||+.| .++..|+.-.+|-++-.+. .+.+|..+.+. ......+++ ++.++-...++.++--|+++..
T Consensus 37 YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~-~i~QLTdg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG-EITQLTDGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT--EEEE---SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT--
T ss_pred eecCCCcCCCCCEEEEEeccCCCcceEEEEcccC-EEEECccCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcCc
Confidence 33445678888655 4555577666665543333 34555543322 223444543 4666556666788888887753
Q ss_pred ceeEEEEecCCCCCeeEEEecCCCCCcEEE
Q 022111 91 DWTQAHTFNDHKSSVNSIAWAPHELGLSLA 120 (302)
Q Consensus 91 ~~~~~~~~~~h~~~i~~l~~~pd~~~~~l~ 120 (302)
. ..+ +....+.+....|..+..+..++
T Consensus 114 ~-~~v--y~~p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 114 E-RVV--YEVPDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp E-EEE--EE--TTEEEEEEEEE-TTSSEEE
T ss_pred E-EEE--EECCcccccccceeeCCCccEEE
Confidence 2 223 33344445445564333344443
No 458
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=30.44 E-value=86 Score=16.18 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.9
Q ss_pred EEEEEecCCeEEEEEeccC
Q 022111 227 TIASASQDGTVVIWTCAKE 245 (302)
Q Consensus 227 ~l~s~s~D~~i~iwd~~~~ 245 (302)
.+..++.++.+...|.++.
T Consensus 8 ~v~~~~~~g~l~a~d~~~G 26 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTG 26 (33)
T ss_pred EEEEEcCCCEEEEEEcccC
Confidence 5777888899999887654
No 459
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.60 E-value=1.3e+02 Score=29.64 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=40.8
Q ss_pred cceeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCcccCeEEEEeeCCCCCCEEEEEeCCCeEEEEE
Q 022111 12 DTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWK 85 (302)
Q Consensus 12 ~~v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd 85 (302)
..++++.-+|-++-++++..||.+++|++..-....+.... .+-..+.|.+ .-|++...|+.+.-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tn----hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTN----HGLVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeec----cceEEEeccchhheee
Confidence 45677887899999999999999999998532211121111 1122344421 2255666677777774
No 460
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.13 E-value=2.8e+02 Score=27.37 Aligned_cols=49 Identities=12% Similarity=0.348 Sum_probs=32.9
Q ss_pred CcEEEEEEecCccccccccccc-cCCCceeEEEeeCCCCCCccEEEEEecCCeEEEEEecc
Q 022111 185 NTVKVWKMYNGIWKMDCFPALQ-MHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAK 244 (302)
Q Consensus 185 ~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~ 244 (302)
..|+||+.... .+.... .|. .+-.+.|+.+ ..|+....||+++++++-.
T Consensus 64 ~~I~If~~sG~-----lL~~~~w~~~-~lI~mgWs~~-----eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNISGQ-----LLGRILWKHG-ELIGMGWSDD-----EELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEecccc-----chHHHHhcCC-CeeeecccCC-----ceEEEEeccceEEEeecch
Confidence 45888876542 122221 232 5667889876 5689999999999999753
No 461
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=29.00 E-value=4.8e+02 Score=24.29 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=19.1
Q ss_pred EEEEEecCCeEEEEEeccCCcceee
Q 022111 227 TIASASQDGTVVIWTCAKEGEQWEG 251 (302)
Q Consensus 227 ~l~s~s~D~~i~iwd~~~~~~~~~~ 251 (302)
.++.++.+|.+...|.++....|..
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEe
Confidence 5777888999999998876555643
No 462
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=27.19 E-value=1.5e+02 Score=18.32 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=15.2
Q ss_pred EEEEccCCCEEEEecCCceEEeeecCCceEEEeee
Q 022111 263 SVSWSLTGNLLAVADANNVTLWKEAVDGEWQQVSV 297 (302)
Q Consensus 263 ~~~~spdg~~la~~~~d~i~~w~~~~~~~~~~~~~ 297 (302)
..+|.|||++||... ...+++.+..|
T Consensus 29 ~aa~~pdG~lvAL~~---------~~g~~~rp~~V 54 (56)
T PF09142_consen 29 VAAFAPDGRLVALLE---------ERGGRARPVVV 54 (56)
T ss_dssp EEEE-TTS-EEEEEE---------EETTEEEEEEE
T ss_pred EEEECCCCcEEEEEE---------ccCCcEeEEEe
Confidence 457888998888772 23455665554
No 463
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=26.51 E-value=2.5e+02 Score=21.10 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=33.4
Q ss_pred EeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeeeecc--CCCcEEEEEEccCCCEEEEecCCceEEeeecCCceEE
Q 022111 216 AWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANNVTLWKEAVDGEWQ 293 (302)
Q Consensus 216 ~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~la~~~~d~i~~w~~~~~~~~~ 293 (302)
-|.+|. +-.+++|-.|++||.|.+...... . ..+.. ...+..+++|-|-- .+-+-.-.-.|+++...+. .+
T Consensus 17 ~yD~dt---~llyl~gKGD~~ir~yEv~~~~p~-l-~~l~~~~s~~~~~G~~~lPK~-~~dv~~~Ei~R~lkl~~~~-ie 89 (136)
T PF08954_consen 17 FYDEDT---NLLYLAGKGDGNIRYYEVSDESPY-L-HYLSEYRSPEPQKGFAFLPKR-ACDVMKCEIARFLKLTNDK-IE 89 (136)
T ss_dssp EE-TTT----EEEEEETT-S-EEEEEE-SSTTS-E-EEEEEE--SS--SEEEE--GG-GS-GGGTEEEEEEEEETTE-EE
T ss_pred eEcCCC---CEEEEEeccCcEEEEEEEcCCCCc-e-EEccccccCCCeEeeEecCcc-cCCchheeeeeeeeecCCc-EE
Confidence 345553 245667778999999999754211 1 11222 24566788888732 1111111135666654444 55
Q ss_pred EeeecCC
Q 022111 294 QVSVVEP 300 (302)
Q Consensus 294 ~~~~~~~ 300 (302)
+....-|
T Consensus 90 pisf~VP 96 (136)
T PF08954_consen 90 PISFIVP 96 (136)
T ss_dssp EEEEE--
T ss_pred EEEEEee
Confidence 5554433
No 464
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.05 E-value=1.3e+02 Score=16.65 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCEEEEEeCCCeEEEEEcC
Q 022111 69 GSILASCSYDGQVIIWKEG 87 (302)
Q Consensus 69 ~~~l~s~s~D~~i~iwd~~ 87 (302)
+..|+.++.|+.+..+|.+
T Consensus 21 ~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT
T ss_pred CCEEEEEcCCCEEEEEeCC
Confidence 4578888899999988864
No 465
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=24.93 E-value=7e+02 Score=24.88 Aligned_cols=69 Identities=23% Similarity=0.169 Sum_probs=40.8
Q ss_pred CceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceee-------e-e----eccCCCc----EEEEEEccCCCEE
Q 022111 210 DWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEG-------R-V----LKDFKTP----VWSVSWSLTGNLL 273 (302)
Q Consensus 210 ~~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~-------~-~----~~~~~~~----v~~~~~spdg~~l 273 (302)
..|.+|+...- +..++-.=.||+|.+.|..+-+..... . + -.++..+ +.-++|||++.-+
T Consensus 260 ~~V~si~~~~~----~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~ 335 (753)
T PF11635_consen 260 KRVVSITSPEL----DIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSL 335 (753)
T ss_pred CeEEEEEeccc----CcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceE
Confidence 34666655433 367888889999999997653111000 0 0 0122222 3348899999888
Q ss_pred EEecCC-ceE
Q 022111 274 AVADAN-NVT 282 (302)
Q Consensus 274 a~~~~d-~i~ 282 (302)
+.-..+ .+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 777666 444
No 466
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=24.07 E-value=3.4e+02 Score=23.49 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=41.8
Q ss_pred eeEEEEccCCCEEEEeeCCCcEEEEeecCCCceEEEEecCccc-Ce--EEEEeeCCCCCCEEEEEeCCCeEEEEEc
Q 022111 14 VHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG-PV--WQVAWAHPKFGSILASCSYDGQVIIWKE 86 (302)
Q Consensus 14 v~~~~~s~~~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h~~-~v--~~v~~~~~~~~~~l~s~s~D~~i~iwd~ 86 (302)
++++....+|.+|+|+=.-.+|.+.+-. +++.+-.+.|... .. ....|+-.++.+.+-....+++|.++|-
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~--tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPS--TGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECC--CCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 5677777888999887666666665533 3455556654411 10 1112332334556655667888889875
No 467
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.34 E-value=4.8e+02 Score=22.35 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.9
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEecCc-ccCeEEEEeeCCCCCCEEEEEeCCCeEEEEEcCCC
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLKGH-RGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ 89 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~s~D~~i~iwd~~~~ 89 (302)
|++++.|++.+.++..++.++. .+..+..- .-.+...+ +.++.++.-++.|+.....|+++.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs--~~w~f~~~~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS--QIWNFVILETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh--heeeeeehhhhccceEE---cCCCceEEEecCCCcEEEeccccc
Confidence 6788999999999998886542 23333221 11222222 123678889999999999998664
No 468
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=23.09 E-value=59 Score=28.97 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.0
Q ss_pred CceeEEEeeCCCcEEEEEEecC
Q 022111 174 PVQKLASCGCDNTVKVWKMYNG 195 (302)
Q Consensus 174 ~~~~l~s~~~D~~v~iwd~~~~ 195 (302)
-+-.|+|||.|+.+.+||++..
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~~ 361 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRPK 361 (477)
T ss_pred cCceEecCCccceEEEEecccc
Confidence 3567999999999999999853
No 469
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=22.52 E-value=5.9e+02 Score=23.12 Aligned_cols=67 Identities=12% Similarity=0.209 Sum_probs=42.4
Q ss_pred ceeEEEeeCCCCCCccEEEEEecCCeEEEEEeccCCcceeeee-eccCCCcEEEEEEccCCCEEEEecCCceEEe
Q 022111 211 WVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRV-LKDFKTPVWSVSWSLTGNLLAVADANNVTLW 284 (302)
Q Consensus 211 ~v~~v~~~p~~~~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~la~~~~d~i~~w 284 (302)
.+.++.|.+++ .+..++.+|.+.... .....|+... .......++.+.|.++++-+++|....|..|
T Consensus 329 ~l~~v~~~~d~-----~~~a~G~~G~v~~s~--D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKK-----EAWAAGGSGILLRST--DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCC-----cEEEEECCCcEEEeC--CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 48889998763 466666778665543 3333454221 1234567899999888888888854444444
No 470
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=21.92 E-value=6e+02 Score=22.97 Aligned_cols=201 Identities=14% Similarity=0.117 Sum_probs=94.6
Q ss_pred CCEEEEeeCCCcEEEEeecCCCceEEEEec-CcccCeEEEEeeCCCCCCE--EEEEeC--C--CeEEEEEcCCCCceeEE
Q 022111 23 GKRLATASSDSSIKIIGLSNSASQHLATLK-GHRGPVWQVAWAHPKFGSI--LASCSY--D--GQVIIWKEGNQNDWTQA 95 (302)
Q Consensus 23 ~~~l~s~~~d~~v~lw~~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~--l~s~s~--D--~~i~iwd~~~~~~~~~~ 95 (302)
..+++...+.+-+.+||+... .+..+. +.-..| .+++.-+-.|+. ||.++. + .+|++|.+..... .+
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk---~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g--~L 141 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGK---ELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG--EL 141 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS----EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT--EE
T ss_pred cceEEEEeCCCCEEEEcCCCc---EEEeecCCCccee-eeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC--cc
Confidence 457777788889999999753 344442 222222 333321111332 444443 2 4799998753221 22
Q ss_pred EEecC-------CCCCeeEEEe--cCCCCCcEEEEEecCCcEEEEEecCCC--Cee---eeeecccCCCCeEEEEeCCCC
Q 022111 96 HTFND-------HKSSVNSIAW--APHELGLSLACGSSDGNISVFTATADG--GWD---TTRIDQAHPVGVTSVSWAPAM 161 (302)
Q Consensus 96 ~~~~~-------h~~~i~~l~~--~pd~~~~~l~sg~~d~~v~~~~~~~~~--~~~---~~~~~~~h~~~v~~~~~~~~~ 161 (302)
..+.. -...+..+++ +|.....++.....+|.+..|.+...+ ... ...+. -..++..|....
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDD-- 217 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDD-- 217 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEET--
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEec--
Confidence 22221 1123556665 343223466677788888888775322 111 12221 122344443332
Q ss_pred CCCceeecccCCCceeEEEeeCCCcEEEEEEecCc-cccccccccc--cCCCceeEEEeeCCCCCCccEEEEEecCCeEE
Q 022111 162 APGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGI-WKMDCFPALQ--MHSDWVRSVAWAPNLGLPKSTIASASQDGTVV 238 (302)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~s~~~D~~v~iwd~~~~~-~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~s~D~~i~ 238 (302)
....|..+-+|.-|.-|+..... .....+.... +...-|..|+.-......+..|+|.=.+.+..
T Consensus 218 ------------e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 218 ------------ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp ------------TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred ------------ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 23567777777655555554211 1112221122 23456778887543211234455555588999
Q ss_pred EEEeccC
Q 022111 239 IWTCAKE 245 (302)
Q Consensus 239 iwd~~~~ 245 (302)
||+.+..
T Consensus 286 Vy~r~~~ 292 (381)
T PF02333_consen 286 VYDREGP 292 (381)
T ss_dssp EEESSTT
T ss_pred EEecCCC
Confidence 9997653
Done!