BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022112
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD 105
G + + LE + KPTHV ++A P+ DW E TNV G++ +A
Sbjct: 72 GSVTDAGLLERAFDSFKPTHVVHSAAAYKDPD-DWAEDAA-----TNVQGSINVAKAASK 125
Query: 106 KGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVC 164
G+ L+N+ T + + P+ D+P + Y +K E L +V
Sbjct: 126 AGVKRLLNFQTALCYGRPATVPI-------PIDSPTAPFTSYGISKTAGEAFLM-MSDVP 177
Query: 165 TLRVRMPISSDLSNPRNFITKITRYEKVV----------NIPNSMTILDELLPISIEMAK 214
+ +R+ ++++ PR I I + K + + + + + D L + + +
Sbjct: 178 VVSLRL---ANVTGPRLAIGPIPTFYKRLKAGQKCFCSDTVRDFLDMSDFLAIADLSLQE 234
Query: 215 RNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNN----ELD 270
TG++N + S E+ ++ Y+ TL E V VAP +++ LD
Sbjct: 235 GRPTGVFNVSTGEGHSIKEVFDVVLDYV-------GATLAEPVPV-VAPGADDVPSVVLD 286
Query: 271 ASKLKTEF 278
SK +TEF
Sbjct: 287 PSKTETEF 294
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 22/161 (13%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR-----LENRASLEADI----------A 59
++ LI G G++G L Q+++ +G+ R L N + DI +
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 71
Query: 60 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119
+KP ++F+ A + + W +K T TNV GTL + D RD L G
Sbjct: 72 DIKPDYIFHLAAKSSVKD-SWL--NKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 128
Query: 120 EYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160
EY P S + + + P S Y +KA V L + +
Sbjct: 129 EYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQY 166
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 62/168 (36%), Gaps = 43/168 (25%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD 105
G + + L + IA KP VF+ A +P V ++T TNV+GT+ L + +
Sbjct: 64 GDIRDFEKLRSSIAEFKPEIVFHMAA---QPLVRLSYEQPIKTYSTNVMGTVHLLETVKQ 120
Query: 106 KGLI--LINYATG-------CIFEYDSGHPLGS--------------------------- 129
G I ++N + ++ Y P+G
Sbjct: 121 VGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNSKGCAELVASAFRNSFFNPAN 180
Query: 130 ----GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPIS 173
G+G N +G ++ ++L++FEN + +R P S
Sbjct: 181 YEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENNQQVIIRNPYS 228
>pdb|1VL0|A Chain A, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|B Chain B, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
pdb|1VL0|C Chain C, Crystal Structure Of A Dtdp-4-Dehydrorhamnose Reductase,
Rfbd Ortholog (Ca_c2315) From Clostridium Acetobutylicum
Atcc 824 At 2.05 A Resolution
Length = 292
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 13/146 (8%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR---LENRASLEADIAAVKPTHVFNAAGV 72
K LI G G +G + K + ++++ + + N ++ KP V N A
Sbjct: 14 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAH 73
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T VD CE + N +G LA G ++ +T +F+ ++ P+
Sbjct: 74 TA---VDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-- 128
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLK 158
+E P S Y KTK E +K
Sbjct: 129 --DEVNPQ---SAYGKTKLEGENFVK 149
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 8/167 (4%)
Query: 25 WIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESH 84
+ G L+ AQS F + + +RA L +P V + A +VD
Sbjct: 37 YAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAA---ESHVDRSIDG 93
Query: 85 KVETIRTNVVGTLTLADVCRDKGLILI-NYATGCIFEYDSGHP----LGSGIGFKEEDTP 139
I TN+VGT TL + R L + + F + S L S F E TP
Sbjct: 94 PAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTP 153
Query: 140 NFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
S YS +KA + L++ + L + S+ P +F K+
Sbjct: 154 YAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKL 200
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD 105
G + ++ L I +P VF+ A +P V S VET TNV+GT+ L + R
Sbjct: 64 GDIRDQNKLLESIREFQPEIVFHMAA---QPLVRLSYSEPVETYSTNVMGTVYLLEAIRH 120
Query: 106 KG 107
G
Sbjct: 121 VG 122
>pdb|4I8P|A Chain A, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
pdb|4I8P|B Chain B, Crystal Structure Of Aminoaldehyde Dehydrogenase 1a From
Zea Mays (zmamadh1a)
Length = 520
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 94 VGTLTLADVCRDKGLI--LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151
V L LAD+C++ GL ++N TG D+G PL + + D F GSF + K
Sbjct: 209 VTCLELADICKEVGLPSGVLNIVTG--LGPDAGAPLSA---HPDVDKVAFTGSFETGKKI 263
Query: 152 MV 153
M
Sbjct: 264 MA 265
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFN A G + + +S+ + N + + + + R G+ YA+ +
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 125 HPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP---- 179
+ + KE D P Y K EEL K++ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 180 ------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTN 225
R T R+E + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 226 PGVVSHNEILEM 237
+VS NE+ EM
Sbjct: 274 DEMVSMNEMAEM 285
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFN A G + + +S+ + N + + + + R G+ YA+ +
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 125 HPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP---- 179
+ + KE D P Y K EEL K++ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 180 ------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTN 225
R T R+E + S T +DE + + + K + N +
Sbjct: 214 KGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 226 PGVVSHNEILEM 237
+VS NE+ EM
Sbjct: 274 DEMVSMNEMAEM 285
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 7/104 (6%)
Query: 89 IRTNVVGTLTLADVCRDKGLILINYATGCIF------EYDSGHPLGSGIGFKEEDTPNFV 142
I TN +GT TL + R + + +T ++ E GH G G F E N
Sbjct: 99 IHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-P 157
Query: 143 GSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
S YS TKA + ++K + ++ + S+ P I K
Sbjct: 158 SSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKF 201
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFN A G + + +S+ + N + + + + R G+ YA+ +
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 125 HPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP---- 179
+ + KE D P Y + EEL K++ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 180 ------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTN 225
R T R+E + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 226 PGVVSHNEILEM 237
+VS NE+ EM
Sbjct: 274 DEMVSMNEMAEM 285
>pdb|1O9R|A Chain A, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|B Chain B, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|C Chain C, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|D Chain D, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|E Chain E, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
pdb|1O9R|F Chain F, The X-Ray Crystal Structure Of Agrobacterium Tumefaciens
Dps, A Member Of The Family That Protect Dna Without
Binding
Length = 162
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 201 ILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243
IL+E L I++A WN P ++ +E+L+ +R +D
Sbjct: 21 ILNESLASVIDLALVTKQAHWNLKGPQFIAVHELLDTFRTQLD 63
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 14/161 (8%)
Query: 31 GKLCQAQSI----DFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKV 86
G L +SI ++ + G ++N LE I + N A +VD + +
Sbjct: 63 GNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFAA---ESHVDRSIENPI 119
Query: 87 ETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSF 145
TNV+GT+TL ++ + I L+ +T ++ LG F EE TP S
Sbjct: 120 PFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVY-----GSLGKTGRFTEE-TPLAPNSP 173
Query: 146 YSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
YS +KA + + + L V + S+ P + K+
Sbjct: 174 YSSSKASADXIALAYYKTYQLPVIVTRCSNNYGPYQYPEKL 214
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 70/192 (36%), Gaps = 21/192 (10%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSG 124
HVFN A G + + +S+ + N + + + + R G+ YA+ +
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFK 153
Query: 125 HPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP---- 179
+ + KE D P + K EEL K++ + R+ ++ P
Sbjct: 154 QLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTW 213
Query: 180 ------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFTN 225
R T R+E + S T +DE + + + K + N +
Sbjct: 214 KGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGS 273
Query: 226 PGVVSHNEILEM 237
+VS NE+ EM
Sbjct: 274 DEMVSMNEMAEM 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,276,971
Number of Sequences: 62578
Number of extensions: 385164
Number of successful extensions: 975
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 22
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)