BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022112
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SYM5|RHM1_ARATH Probable rhamnose biosynthetic enzyme 1 OS=Arabidopsis thaliana
GN=RHM1 PE=1 SV=1
Length = 669
Score = 509 bits (1310), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/289 (83%), Positives = 260/289 (89%), Gaps = 1/289 (0%)
Query: 12 SKP-LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAA 70
KP LKFLIYG+TGWIGGLLGK+C Q I + YG GRLE+R+SL DI +VKPTHVFN+A
Sbjct: 381 QKPSLKFLIYGKTGWIGGLLGKICDKQGIAYEYGKGRLEDRSSLLQDIQSVKPTHVFNSA 440
Query: 71 GVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSG 130
GVTGRPNVDWCESHK ETIR NV GTLTLADVCR+ GL+++N+ATGCIFEYD HP GSG
Sbjct: 441 GVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMMNFATGCIFEYDDKHPEGSG 500
Query: 131 IGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYE 190
IGFKEEDTPNF GSFYSKTKAMVEELLK ++NVCTLRVRMPISSDL+NPRNFITKI+RY
Sbjct: 501 IGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLNNPRNFITKISRYN 560
Query: 191 KVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKN 250
KVVNIPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMYR YI+P F W N
Sbjct: 561 KVVNIPNSMTVLDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYRDYINPEFKWAN 620
Query: 251 FTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
FTLEEQAKVIVAPRSNNE+DASKLK EFPELLSIKESLIKY + PNKKT
Sbjct: 621 FTLEEQAKVIVAPRSNNEMDASKLKKEFPELLSIKESLIKYAYGPNKKT 669
>sp|Q9LH76|RHM3_ARATH Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana
GN=RHM3 PE=1 SV=1
Length = 664
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/293 (79%), Positives = 261/293 (89%)
Query: 7 GSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHV 66
G + LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP+HV
Sbjct: 372 GCSGDKRSLKFLIYGKTGWLGGLLGKLCEKQGIPYEYGKGRLEDRASLIADIRSIKPSHV 431
Query: 67 FNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHP 126
FNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD+ HP
Sbjct: 432 FNAAGLTGRPNVDWCESHKTETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDAAHP 491
Query: 127 LGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKI 186
GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFITKI
Sbjct: 492 EGSGIGFKEEDKPNFTGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFITKI 551
Query: 187 TRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNF 246
+RY KVVNIPNSMTILDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI+P+F
Sbjct: 552 SRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKSYIEPDF 611
Query: 247 TWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
W NF LEEQAKVIVAPRSNNE+D +KL EFPE+LSIK+SLIKYVFEPNK+T
Sbjct: 612 KWSNFNLEEQAKVIVAPRSNNEMDGAKLSKEFPEMLSIKDSLIKYVFEPNKRT 664
>sp|Q9LPG6|RHM2_ARATH Probable rhamnose biosynthetic enzyme 2 OS=Arabidopsis thaliana
GN=RHM2 PE=1 SV=1
Length = 667
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/296 (79%), Positives = 261/296 (88%)
Query: 4 PANGSDAGSKPLKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKP 63
P NG LKFLIYG+TGW+GGLLGKLC+ Q I + YG GRLE+RASL ADI ++KP
Sbjct: 372 PKNGDSGDKASLKFLIYGKTGWLGGLLGKLCEKQGITYEYGKGRLEDRASLVADIRSIKP 431
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123
THVFNAAG+TGRPNVDWCESHK ETIR NV GTLTLADVCR+ L+++N+ATGCIFEYD+
Sbjct: 432 THVFNAAGLTGRPNVDWCESHKPETIRVNVAGTLTLADVCRENDLLMMNFATGCIFEYDA 491
Query: 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFI 183
HP GSGIGFKEED PNF GSFYSKTKAMVEELL+ F+NVCTLRVRMPISSDL+NPRNFI
Sbjct: 492 THPEGSGIGFKEEDKPNFFGSFYSKTKAMVEELLREFDNVCTLRVRMPISSDLNNPRNFI 551
Query: 184 TKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYID 243
TKI+RY KVV+IPNSMT+LDELLPISIEMAKRNL GIWNFTNPGVVSHNEILEMY+ YI+
Sbjct: 552 TKISRYNKVVDIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYKNYIE 611
Query: 244 PNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFPELLSIKESLIKYVFEPNKKT 299
P F W NFT+EEQAKVIVA RSNNE+D SKL EFPE+LSIKESL+KYVFEPNK+T
Sbjct: 612 PGFKWSNFTVEEQAKVIVAARSNNEMDGSKLSKEFPEMLSIKESLLKYVFEPNKRT 667
>sp|Q5UPS5|YL780_MIMIV Uncharacterized protein L780 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L780 PE=4 SV=1
Length = 289
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 174/290 (60%), Gaps = 12/290 (4%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTG 74
+K+LI+G GWIG ++ K+ + Q R ++ +++E +I+ +KP V + G T
Sbjct: 1 MKWLIFGNKGWIGSMVSKILEQQGEQVVGAQSRADDESAVEREISEIKPDRVMSFIGRTH 60
Query: 75 RP---NVDWCESHK--VETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGS 129
P +D+ E VE ++ N+ G L LA +C+ + L TGCIFE +
Sbjct: 61 GPGYSTIDYLEQSGKLVENVKDNLYGPLCLAFICQKYNIHLTYLGTGCIFEGQNNFSADE 120
Query: 130 GIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN-VCTLRVRMPISSDLSNPRNFITKITR 188
GF E D PNF GS YS K + L+ F+N V LR+RMPI+ + NPR+FITKI
Sbjct: 121 K-GFTENDKPNFFGSSYSVVKGFTDRLMHFFDNDVLNLRIRMPITIE-QNPRSFITKILS 178
Query: 189 YEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTW 248
Y ++ +IPNSMTILD+++P+ I+MA+ TG +NFTNPG+VSHNEIL + R PN TW
Sbjct: 179 YSRICSIPNSMTILDQMIPVMIDMARNKTTGTFNFTNPGLVSHNEILSLIRDIHKPNLTW 238
Query: 249 KNFTLEEQAKVIVAPRSNNELDASKLKTEFPE----LLSIKESLIKYVFE 294
+N + E+Q ++ A RSNN L+ KL++ +P+ L I+E + K F+
Sbjct: 239 ENMSREQQLAILKADRSNNLLNTDKLQSLYPDVPDILTGIREVVSKMKFQ 288
>sp|P29781|RMLD_STRGR dTDP-4-dehydrorhamnose reductase OS=Streptomyces griseus GN=strL
PE=1 SV=1
Length = 304
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 70/178 (39%), Gaps = 14/178 (7%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSIDFT-YGSGRLE--NRASLEADIAAVKPTHVFNAAGV 72
++L+ G +G +G L L + T G G L+ + A++ + +A +P V N A
Sbjct: 8 RWLVTGASGMLGRELTPLLDRRGAAVTALGRGHLDITDGAAVRSAVAEHRPAVVVNCAAW 67
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T VD ES + N G LA CR G +L+ +T +F G P
Sbjct: 68 TA---VDEAESEPALAMAVNGEGPRHLAQACRAVGAVLLQLSTDYVFPGSGGRPY----- 119
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNPRNFITKITRYE 190
ED P + Y TK E + VR P NF+ K+ R E
Sbjct: 120 --REDHPTGPRTVYGCTKRAGERAVLEVLPDTGYIVRTAWLYGAGGP-NFVAKMIRLE 174
>sp|Q9W1X8|FCL_DROME Probable GDP-L-fucose synthase OS=Drosophila melanogaster GN=Gmer
PE=2 SV=1
Length = 321
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 16 KFLIYGRTGWIGGLLGKLCQAQSID----FTYGS--GRLENRASLEADIAAVKPTHVFNA 69
K L+ G TG +G L + + QS + F GS L N A+ +A A KPTHV +
Sbjct: 3 KVLVTGGTGLVGKALEAVIKEQSPEDEQWFFAGSKDADLTNLAATQALFAREKPTHVIHL 62
Query: 70 AGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLI-LINYATGCIFEYDSGHPLG 128
A + G + ++ ++ +R N++ + ++G + +++ + CIF + +P+
Sbjct: 63 AAMVG--GLFHNMNNNLDFLRNNLLINDNVLQTAHEQGCVKVVSCLSTCIFPDKTSYPID 120
Query: 129 SGIGFKEEDTPNFVGSFYSK 148
+ P+ G Y+K
Sbjct: 121 ETMVHNGPPHPSNYGYSYAK 140
>sp|P0C7J0|RMLB_XANCP dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=rfbB PE=3 SV=1
Length = 351
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 117/314 (37%), Gaps = 61/314 (19%)
Query: 17 FLIYGRTGWIGG-----LLGKLCQAQSIDFTYGSGRLENRASLE--ADIAAVK------- 62
+L+ GR G+IGG + + + ++D +G L ASLE AD VK
Sbjct: 4 WLVTGRAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGA 63
Query: 63 ----------PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD------- 105
P V N A + +VD I+TNVVGTL L + RD
Sbjct: 64 LVTRLLQEHQPDAVLNFAAES---HVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPD 120
Query: 106 ---KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN 162
++ +T ++ LG F E TP S YS +KA + L++ F +
Sbjct: 121 TRRDAFRFLHVSTDEVYG-----TLGETGKFTET-TPYAPNSPYSASKAASDHLVRAFHH 174
Query: 163 VCTLRVRMPISSDLSNPRNFITKITR--------------YEKVVNIPNSMTILDELLPI 208
L V S+ P +F K+ Y + + + + D I
Sbjct: 175 TYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAI 234
Query: 209 SIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNE 268
+AK + +N + E+++ +D + ++ E V R ++
Sbjct: 235 RTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHD 294
Query: 269 ----LDASKLKTEF 278
+DASKLK E
Sbjct: 295 RRYAIDASKLKDEL 308
>sp|Q6T1X6|RMD_ANETH GDP-6-deoxy-D-mannose reductase OS=Aneurinibacillus
thermoaerophilus GN=rmd PE=1 SV=1
Length = 309
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 22/161 (13%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGR-----LENRASLEADI----------A 59
++ LI G G++G L Q+++ +G+ R L N + DI +
Sbjct: 1 MRALITGVAGFVGKYLANHLTEQNVE-VFGTSRNNEAKLPNVEMISLDIMDSQRVKKVIS 59
Query: 60 AVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIF 119
+KP ++F+ A + + W +K T TNV GTL + D RD L G
Sbjct: 60 DIKPDYIFHLAAKSSVKD-SWL--NKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE 116
Query: 120 EYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNF 160
EY P S + + + P S Y +KA V L + +
Sbjct: 117 EYGMILPEESPVSEENQLRPM---SPYGVSKASVGMLARQY 154
>sp|Q9S795|BADH1_ARATH Betaine aldehyde dehydrogenase 1, chloroplastic OS=Arabidopsis
thaliana GN=ALDH10A8 PE=2 SV=1
Length = 501
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 94 VGTLTLADVCRDKGLI--LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKA 151
V L LAD+CR+ GL ++N TG F ++G PL S G D F GSF + +K
Sbjct: 192 VTCLELADICREVGLPPGVLNVLTG--FGSEAGAPLASHPGV---DKIAFTGSFATGSKV 246
Query: 152 M 152
M
Sbjct: 247 M 247
>sp|B2RIK3|LPXK_PORG3 Tetraacyldisaccharide 4'-kinase OS=Porphyromonas gingivalis (strain
ATCC 33277 / DSM 20709 / JCM 12257) GN=lpxK PE=3 SV=1
Length = 357
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 32/173 (18%)
Query: 118 IFEYDSGHPLGSGIGFKEEDTPNFV----GSFYSKTKAMVEELLKNFENVCTLRVRMPIS 173
I + D +G EE P + G + K KA + +L ++ + T +P +
Sbjct: 115 IVDADRSRAIGYLCDLAEEQRPQLIVLDDGFQHRKVKADLNIVLTDYNRILTKDYLLP-A 173
Query: 174 SDLSNPRNFITKITRYEKVVNIPNSMTIL----DELLPISIEMAKRNLTGIWNFTNPGVV 229
L P I + M IL D+L PI + AKR+L +
Sbjct: 174 GRLREPAGSIQR-----------ADMVILTKCPDDLAPIDLRAAKRDL---------ALY 213
Query: 230 SHNEIL---EMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279
H ++ MY Q + P F+ ++ + E ++ + +A ++ +L +++T FP
Sbjct: 214 PHQKLFFSKFMYGQGLKPLFSDQSPSAEVRSALAIAGIASPKLFFREIRTRFP 266
>sp|C1AUJ4|ATKA_RHOOB Potassium-transporting ATPase A chain OS=Rhodococcus opacus (strain
B4) GN=kdpA PE=3 SV=1
Length = 561
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 24 GWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83
G+ G +LG A S+ F Y R++ L D++ V P FN A V+ N +W +S
Sbjct: 61 GYAGSVLG--FSAASVLFLYALQRIQGVLPLSGDLSGVSPAVAFNTA-VSFVTNTNW-QS 116
Query: 84 HKVETIRTNVVGTLTLA 100
+ ET +N+ + LA
Sbjct: 117 YAPETTMSNLTQPVGLA 133
>sp|Q59745|EXOB_RHILT UDP-glucose 4-epimerase OS=Rhizobium leguminosarum bv. trifolii
GN=exoB PE=3 SV=1
Length = 327
Score = 34.7 bits (78), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHK--VETIRTNVVGTLTLADVC 103
G + +RA L+ +A KP + + A + ++ ES K V NV+GTLTL
Sbjct: 52 GDIRDRARLDEVLAKHKPAAILHFAAL-----IEVGESVKDPVSFYENNVIGTLTLLSAA 106
Query: 104 RDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENV 163
+ G+ +++ C G P + P + Y +TK +VE+ L +++
Sbjct: 107 QAAGINAFVFSSTCA---TYGLPQSVPLDETHRQVPI---NPYGRTKYIVEQALADYDQY 160
Query: 164 CTLR 167
+LR
Sbjct: 161 GSLR 164
>sp|P59510|ATS20_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 20
OS=Homo sapiens GN=ADAMTS20 PE=2 SV=2
Length = 1910
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 44 GSGRLENRASLEA---DIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLA 100
G+ L+N S + D+ V P+H A +T D C S + + N++G L
Sbjct: 326 GATTLKNFCSWQQTQNDLDDVHPSHHDTAVLITRE---DICSSKE----KCNMLGLSYLG 378
Query: 101 DVCRDKGLILINYATGCIFEYDSGHPLGSGIGFKEEDTP 139
+C IN G I + H LG +G + +D P
Sbjct: 379 TICDPLQSCFINEEKGLISAFTIAHELGHTLGVQHDDNP 417
>sp|Q7MWH4|LPXK_PORGI Tetraacyldisaccharide 4'-kinase OS=Porphyromonas gingivalis (strain
ATCC BAA-308 / W83) GN=lpxK PE=3 SV=1
Length = 357
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 32/173 (18%)
Query: 118 IFEYDSGHPLGSGIGFKEEDTPNFV----GSFYSKTKAMVEELLKNFENVCTLRVRMPIS 173
I + D +G EE P + G + K KA + +L ++ + T +P +
Sbjct: 115 IVDADRSRAIGYLCDLAEEQRPQLIVLDDGFQHRKVKADLNIVLTDYNRILTKDYLLP-A 173
Query: 174 SDLSNPRNFITKITRYEKVVNIPNSMTIL----DELLPISIEMAKRNLTGIWNFTNPGVV 229
L P I + M IL D+L PI + AKR+L +
Sbjct: 174 GRLREPAGSIQR-----------ADMVILTKCPDDLAPIDLRAAKRDL---------ALY 213
Query: 230 SHNEIL---EMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKTEFP 279
H ++ +Y Q + P F+ ++ + E ++ + +A ++ +L +++T FP
Sbjct: 214 PHQKLFFSKFLYGQGLKPLFSDQSPSAEVRSALAIAGIASPKLFFREIRTRFP 266
>sp|B0RVL0|RMLB_XANCB dTDP-glucose 4,6-dehydratase OS=Xanthomonas campestris pv.
campestris (strain B100) GN=rfbB PE=3 SV=1
Length = 351
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 115/314 (36%), Gaps = 61/314 (19%)
Query: 17 FLIYGRTGWIGG-----LLGKLCQAQSIDFTYGSGRLENRASLE--ADIAAVK------- 62
+L+ G G+IGG + + + ++D +G L ASLE AD VK
Sbjct: 4 WLVTGGAGFIGGNFVLEAVSRGIRVVNLDALTYAGNLNTLASLEGNADHIFVKGDIGDGA 63
Query: 63 ----------PTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD------- 105
P V N A +VD I+TNVVGTL L + RD
Sbjct: 64 LVTRLLQEHQPDAVLNFAA---ESHVDRSIEGPGAFIQTNVVGTLALLEAVRDYWKALPD 120
Query: 106 ---KGLILINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFEN 162
++ +T ++ LG F E TP S YS +KA + L++ F +
Sbjct: 121 TRRDAFRFLHVSTDEVYG-----TLGETGKFTET-TPYAPNSPYSASKAASDHLVRAFHH 174
Query: 163 VCTLRVRMPISSDLSNPRNFITKITR--------------YEKVVNIPNSMTILDELLPI 208
L V S+ P +F K+ Y + + + + D I
Sbjct: 175 TYGLPVLTTNCSNNYGPYHFPEKLIPLVIAKALAGEPLPVYGDGKQVRDWLFVSDHCEAI 234
Query: 209 SIEMAKRNLTGIWNFTNPGVVSHNEILEMYRQYIDPNFTWKNFTLEEQAKVIVAPRSNNE 268
+AK + +N + E+++ +D + ++ E V R ++
Sbjct: 235 RTVLAKGRVGETYNVGGNSERQNIEVVQAICALLDQHRPREDGKPRESQIAYVTDRPGHD 294
Query: 269 ----LDASKLKTEF 278
+DASKLK E
Sbjct: 295 RRYAIDASKLKDEL 308
>sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2
SV=1
Length = 430
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 46 GRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRD 105
G + + A L+ V THV + A G V + + + +N+ G + L +VC+
Sbjct: 149 GDINDAALLKKLFEVVPFTHVMHLAAQAG---VRYAMENPSSYVHSNIAGFVNLLEVCKS 205
Query: 106 KGLILINYATGCIFEYDSG-HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVC 164
N ++ S + L + + F E+D + S Y+ TK EE+ + ++
Sbjct: 206 A-----NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIY 260
Query: 165 TL 166
L
Sbjct: 261 GL 262
>sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1
SV=1
Length = 437
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 64 THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDS 123
THV + A G V + + + +N+ G + L ++C+ +N ++ S
Sbjct: 173 THVMHLAAQAG---VRYAMENPSSYVHSNIAGFVNLLEICKS-----VNPQPAIVWASSS 224
Query: 124 G-HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTL 166
+ L + + F E+D + S Y+ TK EE+ + ++ L
Sbjct: 225 SVYGLNTKVPFSEKDKTDQPASLYAATKKAGEEIAHTYNHIYGL 268
>sp|P39631|SPSK_BACSU Spore coat polysaccharide biosynthesis protein SpsK OS=Bacillus
subtilis (strain 168) GN=spsK PE=3 SV=3
Length = 283
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Query: 16 KFLIYGRTGWIG-GLLGKLCQA--QSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGV 72
K L+ G G +G L +L QA + I T + ++ S+ +P V N+A
Sbjct: 3 KVLVTGAGGQLGLELCRQLKQAGYEVIALTKKMMNIADQRSVRHSFGHYQPDIVVNSAAF 62
Query: 73 TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLGSGIG 132
T +VD CE + N +G A G ++ +T +F G G
Sbjct: 63 T---SVDQCEKELDKAYLINGIGAYYTALESTRIGAQYVHISTDYVFN-------GKGTQ 112
Query: 133 FKEEDTPNFVGSFYSKTKAMVEELLK 158
ED P + Y K+K + EEL++
Sbjct: 113 PYREDDPLDPKTIYGKSKRLGEELIR 138
>sp|Q0SHD0|ATKA_RHOSR Potassium-transporting ATPase A chain OS=Rhodococcus sp. (strain
RHA1) GN=kdpA PE=3 SV=1
Length = 571
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 24 GWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCES 83
G+ G +LG S+ F Y R++ L D++ V P FN A V+ N +W +S
Sbjct: 61 GYAGSVLG--FSTASVLFLYALQRIQGVLPLSGDLSGVSPAVAFNTA-VSFVTNTNW-QS 116
Query: 84 HKVETIRTNVVGTLTLA 100
+ ET +N+ + LA
Sbjct: 117 YAPETTMSNLTQPVGLA 133
>sp|O87874|BCRC_THAAR Benzoyl-CoA reductase subunit C OS=Thauera aromatica GN=bcrC PE=1
SV=1
Length = 386
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 180 RNFITKITRYEKVVNIPNSMTILDELLPISIEMAKRNLTGIWNFTNPG-VVSHNEILEMY 238
+++I +I R + + M +D +L SI RNL+G+W PG V + ++ + Y
Sbjct: 74 QSYICRIPRSTIELGLSKRMDFVDGMLFPSICDVIRNLSGMWKLMFPGKYVRYFDVPQNY 133
Query: 239 RQYIDPNF 246
R + N+
Sbjct: 134 RDDVGGNY 141
>sp|Q58461|Y1061_METJA Uncharacterized membrane protein MJ1061 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1061 PE=3 SV=1
Length = 333
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 10/56 (17%)
Query: 51 RASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDK 106
RA E D+ VF+AA + P CE + E ++TNV+GT L +V D+
Sbjct: 76 RAIEEVDV-------VFHAAALKHVP---LCEYNPFEAVKTNVIGTQNLIEVAMDE 121
>sp|P57023|LOLB_NEIMA Outer-membrane lipoprotein LolB OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=lolB PE=3 SV=1
Length = 193
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLG 128
A G N DW VETI N TL +C+D+ L G +++ +S L
Sbjct: 46 AEGKGSYANFDWTYQPPVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAEELS 105
Query: 129 SG-IGFK 134
+GFK
Sbjct: 106 RQLVGFK 112
>sp|P57024|LOLB_NEIMB Outer-membrane lipoprotein LolB OS=Neisseria meningitidis serogroup
B (strain MC58) GN=lolB PE=3 SV=1
Length = 193
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 69 AAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYATGCIFEYDSGHPLG 128
A G N DW VETI N TL +C+D+ L G +++ +S L
Sbjct: 46 AEGKGSYANFDWTYQPPVETININTPLGSTLGQLCQDRDGALAVDGKGNVYQAESAEELS 105
Query: 129 SG-IGFK 134
+GFK
Sbjct: 106 RQLVGFK 112
>sp|A7KAK4|ATG22_PICAN Autophagy-related protein 22 OS=Pichia angusta GN=ATG22 PE=3 SV=1
Length = 559
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 68 NAAGVTGRPNVDWC-ESHKVETIRTNVVGT---LTLADVCRDKGLILINYATGCIFEYDS 123
N TG WC S E +VVGT L L + RD G+ LI+ T C +D
Sbjct: 23 NQPFTTGAEVFGWCLYSWAAEPFIVSVVGTYVPLLLEQIARDNGVKLIDKITPCNQPHDP 82
Query: 124 GHPLGSGIGFKEEDTPNFVGSFYSKTKAMV 153
P+ S K+ D PN ++ S+ + V
Sbjct: 83 TIPIPSPP--KDGDFPNSTLTYASQNDSCV 110
>sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2
SV=1
Length = 434
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 50 NRASLEADIAAVKP-THVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGL 108
N SL + V P THV + A G V + + + +N+ G + L +VC+
Sbjct: 153 NDLSLLKKLFEVVPFTHVMHLAAQAG---VRYAMENPGSYVHSNIAGFVNLLEVCKSA-- 207
Query: 109 ILINYATGCIFEYDSG-HPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTL 166
N ++ S + L + + F E+D + S Y+ TK EE+ + ++ L
Sbjct: 208 ---NPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGL 263
>sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1
Length = 338
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 35/222 (15%)
Query: 15 LKFLIYGRTGWIGGLLGKLCQAQSIDFTYGSGRLENRASLEADIAAVK--PTHVFNAAGV 72
+ L+ G +G+IG L + + DF +L A+ A + V+ P +VF +
Sbjct: 2 MNILVTGGSGFIGSALIRYIINHTQDFVINIDKLTYAANQSA-LREVENNPRYVFEKVDI 60
Query: 73 ---------------------TGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILI 111
+VD S + ++TN+VGT TL +V ++ L
Sbjct: 61 CDLNVIENIFEKYQPDAVMHLAAESHVDRSISGAADFVQTNIVGTYTLLEVAKNYWHTLD 120
Query: 112 NY-ATGCIFEYDSGHPLGSGIGFKE----EDTPNFVGSFYSKTKAMVEELLKNFENVCTL 166
T F + S + + E E +P S YS +KA L++ + L
Sbjct: 121 EAKKTTFRFHHISTDEVYGDLSLSEPAFTEQSPYHPSSPYSASKAASNHLVQAWHRTYGL 180
Query: 167 RVRMPISSDLSNPRNFITKITRYEKVVNIPNSMTILDELLPI 208
V ++N N EK++ + S ++ + LPI
Sbjct: 181 PVI------ITNSSNNYGAYQHAEKLIPLMISNAVMGKPLPI 216
>sp|Q55C77|FCL_DICDI GDP-L-fucose synthase OS=Dictyostelium discoideum GN=ger PE=3 SV=1
Length = 320
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 48 LENRASLEADIAAVKPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKG 107
L++R S + +KPTHV + A G + +KVE R N+ + C++
Sbjct: 47 LKSRESTRSYFEKIKPTHVIHLAARVGGLFSNM--KYKVEFFRENIDINDNVLACCKEFN 104
Query: 108 LI-LINYATGCIFEYDSGHPLGSGIGFKEEDTPNFVGSFYSKTKAMVEELLKNFENVCTL 166
++ ++ + CIF + +P+ + P+ G Y+K V N E C
Sbjct: 105 VVKCVSCLSTCIFPDKTTYPIDETMIHNGPPHPSNEGYAYAKRMIDVLNRAYNEEYGCKF 164
Query: 167 RVRMP 171
+P
Sbjct: 165 TSVIP 169
>sp|Q2R1V8|GME2_ORYSJ GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica
GN=GME-2 PE=2 SV=2
Length = 371
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 74/193 (38%), Gaps = 24/193 (12%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT-GCIFEYDS 123
HVFN A G + + +S+ + N + + + + R G+ YA+ CI Y
Sbjct: 89 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACI--YPE 144
Query: 124 GHPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP--- 179
L + + KE D P Y K EEL K++ + R+ ++ P
Sbjct: 145 FKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGT 204
Query: 180 -------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFT 224
R +T R+E + S T +DE + + + K + N
Sbjct: 205 WKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIG 264
Query: 225 NPGVVSHNEILEM 237
+ +VS NE+ E+
Sbjct: 265 SDEMVSMNEMAEI 277
>sp|A3C4S4|GME1_ORYSJ GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica
GN=GME-1 PE=1 SV=1
Length = 378
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 24/199 (12%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT-GCIFEYDS 123
HVFN A G + + +S+ + N + + + + R G+ YA+ CI Y
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACI--YPE 151
Query: 124 GHPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP--- 179
L + + KE D P Y K EEL K++ + R+ ++ P
Sbjct: 152 FKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGT 211
Query: 180 -------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFT 224
R T R+E + S T +DE + + + K + N
Sbjct: 212 WKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIG 271
Query: 225 NPGVVSHNEILEMYRQYID 243
+ +VS NE+ E+ + D
Sbjct: 272 SDEMVSMNEMAEIILSFED 290
>sp|A2Z7B3|GME1_ORYSI GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica
GN=OsI_032456 PE=2 SV=1
Length = 378
Score = 31.2 bits (69), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 24/199 (12%)
Query: 65 HVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCRDKGLILINYAT-GCIFEYDS 123
HVFN A G + + +S+ + N + + + + R G+ YA+ CI Y
Sbjct: 96 HVFNLAADMG--GMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACI--YPE 151
Query: 124 GHPLGSGIGFKEEDT-PNFVGSFYSKTKAMVEELLKNFENVCTLRVRMPISSDLSNP--- 179
L + + KE D P Y K EEL K++ + R+ ++ P
Sbjct: 152 FKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGT 211
Query: 180 -------------RNFITKITRYEKVVN--IPNSMTILDELLPISIEMAKRNLTGIWNFT 224
R T R+E + S T +DE + + + K + N
Sbjct: 212 WKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIG 271
Query: 225 NPGVVSHNEILEMYRQYID 243
+ +VS NE+ E+ + D
Sbjct: 272 SDEMVSMNEMAEIILSFED 290
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,561,228
Number of Sequences: 539616
Number of extensions: 4841345
Number of successful extensions: 11536
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 11525
Number of HSP's gapped (non-prelim): 35
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)