BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022113
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 27 TAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKY 86
T G L + + DD E F D +++ I+FHKAHG +A++ T P ++
Sbjct: 108 TGGRLKRVAEYVKDD--EAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF--PPGRF 163
Query: 87 GVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALE 146
G + ++ G+V F EKPK G IN G ++LNP+V+D I+ T+ E+E +A +
Sbjct: 164 GALDIQ--AGQVRSFQEKPKG-DGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQ 220
Query: 147 GKLFAMVLPGFWMDIGQPRD--YITG 170
G+L A PGFW + RD Y+ G
Sbjct: 221 GELMAFEHPGFWQPMDTLRDKVYLEG 246
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 40/294 (13%)
Query: 8 FEAKLGIKIICSQETEPLGTAGPLALAR--DKLIDDTGEPFFVLNSDVISEYPFAEMIEF 65
FE KL I +Q+ + GT + A+ D+ + G+ FF +E +I
Sbjct: 61 FEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFS------NEKEICNIITL 114
Query: 66 HKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAV- 124
E +I+ KV P YGV+V++ + K +EKP++ N INAGIY LN +
Sbjct: 115 K-----ENAIIGVKVSNPKDYGVLVLDNQNN-LSKIIEKPEIPPSNLINAGIYKLNSDIF 168
Query: 125 --LDRIELRPTSIEKEVFPKIALEGK---LFAMVLPGFWMDIGQPRDYI-TGXXXXXXXX 178
LD+I + E E+ I L K + + G+WMDIG+P + I
Sbjct: 169 TYLDKISISERG-ELELTDAINLMAKDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLV 227
Query: 179 XXXXXXXXATGANIVGNVLVHESAQ------------IGEGCLIGPDVAVGPGCV----- 221
I G V++ E A+ IG+G IGP+ + P +
Sbjct: 228 FSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKN 287
Query: 222 -VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
+ + V + +M G +I + + S+I G + N+ ++V V
Sbjct: 288 KIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKV 341
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
+ E LG I + + PLGT + L DD V + D ++ A+
Sbjct: 68 LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 127
Query: 62 MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
+I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 128 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 187
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
+ A L L + ++E++
Sbjct: 188 AFDIAALRSALSRLSSNNAQQELY 211
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 203 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 299 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 340
Query: 258 QWARVENMTILGED 271
+ + T LG D
Sbjct: 341 PFTYLRPGTALGAD 354
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
+ E LG I + + PLGT + L DD V + D ++ A+
Sbjct: 72 LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 131
Query: 62 MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
+I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 132 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 191
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
+ A L L + ++E++
Sbjct: 192 AFDIAALRSALSRLSSNNAQQELY 215
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 203 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 303 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 344
Query: 258 QWARVENMTILGED 271
+ + T LG D
Sbjct: 345 PFTYLRPGTALGAD 358
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
+ E LG I + + PLGT + L DD V + D ++ A+
Sbjct: 66 LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 125
Query: 62 MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
+I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 126 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 185
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
+ A L L + ++E++
Sbjct: 186 AFDIAALRSALSRLSSNNAQQELY 209
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 203 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 297 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 338
Query: 258 QWARVENMTILGED 271
+ + T LG D
Sbjct: 339 PFTYLRPGTALGAD 352
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 7/144 (4%)
Query: 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSD--VISEYPFAE 61
+ E LG I + + PLGT + L DD V + D ++ A+
Sbjct: 74 LVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLAD 133
Query: 62 MIEFHKAHGGEASIMVTKVDEPSKYGVVVM---EESTGKVEKFVEKPKLFVGNKINAGIY 118
+I H+A +++ T +D+P YG ++ E VE+ P ++NAG+Y
Sbjct: 134 LIATHRAVSAAVTVLTTTLDDPFGYGRILRTQDHEVMAIVEQTDATPSQREIREVNAGVY 193
Query: 119 LLNPAVLDRI--ELRPTSIEKEVF 140
+ A L L + ++E++
Sbjct: 194 AFDIAALRSALSRLSSNNAQQELY 217
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 203 QIGEGCLIGP-----DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
QIG C++GP DVAVG G V ++ H SSS IG + VG
Sbjct: 305 QIGGRCVVGPDTTLTDVAVGDGASV----------------VRTHG--SSSSIGDGAAVG 346
Query: 258 QWARVENMTILGED 271
+ + T LG D
Sbjct: 347 PFTYLRPGTALGAD 360
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 69/162 (42%), Gaps = 14/162 (8%)
Query: 10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH 69
++ G++ + EP G A + +D + D + VL +V + F+E++ +
Sbjct: 72 SQFGVRFSYRVQEEPRGIADAFIVGKDFIGDS--KVALVLGDNVFYGHRFSEILRRAASL 129
Query: 70 GGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVL---- 125
A I V +P +GVV + S G+V EKP N + G+Y + V+
Sbjct: 130 EDGAVIFGYYVRDPRPFGVVEFD-SEGRVISIEEKPSRPKSNYVVPGLYFYDNQVVEIAR 188
Query: 126 -----DRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 162
DR EL TS+ +E L +L + W+D G
Sbjct: 189 RIEPSDRGELEITSVNEEYLRMGKLRVELMGRGMA--WLDTG 228
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 14/159 (8%)
Query: 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--YPFAEMIEFHKA 68
+ G+ + + G A L L D + +D +L ++ S+ P+ E EF
Sbjct: 94 EFGVSFTYRVQDKAGGIAQALGLCEDFVGND--RMVVILGDNIFSDDIRPYVE--EFTNQ 149
Query: 69 HGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI 128
G A +++ VD+P ++GV ++ K+ + EKPK + GIYL + V I
Sbjct: 150 KEG-AKVLLQSVDDPERFGVANIQNR--KIIEIEEKPKEPKSSYAVTGIYLYDSKVFSYI 206
Query: 129 -ELRPTSIEK----EVFPKIALEGKLFAMVLPGFWMDIG 162
EL+P++ + ++ G L + G+W D G
Sbjct: 207 KELKPSARGELEITDINNWYLKRGVLTYNEMSGWWTDAG 245
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 103/281 (36%), Gaps = 39/281 (13%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVT 78
+ E LGT + A DD E +L DV IS ++ K GG ++
Sbjct: 79 QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRLLAA-KPEGG-IGLLTV 134
Query: 79 KVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIYLLNPAVLDR----IEL 130
K+D PS YG +V E G V VE N+IN GI + N L R ++
Sbjct: 135 KLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDN 192
Query: 131 RPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXA 187
E + IAL +GK A V P ++ + +
Sbjct: 193 NNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLL 252
Query: 188 TGANIV-------------GNVLVHESAQIGEG-CLIGPDVAVGPGCVVESGVRLSRCTV 233
G ++ G + ++ I EG ++G V +G GCV L C +
Sbjct: 253 AGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCV------LKNCVI 306
Query: 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
I + + + + + TVG +AR+ L E HV
Sbjct: 307 GDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 347
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 103/281 (36%), Gaps = 39/281 (13%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVT 78
+ E LGT + A DD E +L DV IS ++ K GG ++
Sbjct: 76 QAEQLGTGHAMQQAAPHFADD--EDILMLYGDVPLISVDTLQRLLAA-KPEGG-IGLLTV 131
Query: 79 KVDEPSKYGVVVMEESTGKVEKFVEKPKLFVG----NKINAGIYLLNPAVLDR----IEL 130
K+D PS YG +V E G V VE N+IN GI + N L R ++
Sbjct: 132 KLDNPSGYGRIVRE--NGDVVGIVEHKDASDAQREINEINTGILVANGRDLKRWLSLLDN 189
Query: 131 RPTSIEKEVFPKIAL---EGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXA 187
E + IAL +GK A V P ++ + +
Sbjct: 190 NNAQGEFYITDIIALAHADGKKIATVHPTRLSEVEGVNNRLQLSALERVFQTEQAEKLLL 249
Query: 188 TGANIV-------------GNVLVHESAQIGEG-CLIGPDVAVGPGCVVESGVRLSRCTV 233
G ++ G + ++ I EG ++G V +G GCV L C +
Sbjct: 250 AGVMLLDPSRFDLRGELTHGRDITIDTNVIIEGHVILGDRVRIGTGCV------LKNCVI 303
Query: 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274
I + + + + + TVG +AR+ L E HV
Sbjct: 304 GDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAEGAHV 344
>pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|2OI5|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI5|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac And Acetyl-Coa
pdb|2OI6|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI6|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Coa And Glcn-1-Po4
pdb|2OI7|A Chain A, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
pdb|2OI7|B Chain B, E. Coli Glmu- Complex With Udp-Glcnac, Desulpho-Coa And
Glcnac-1-Po4
Length = 456
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 69/321 (21%), Positives = 117/321 (36%), Gaps = 69/321 (21%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH--------KAHGGE 72
+ E LGT + A PFF + D++ Y +I K GG
Sbjct: 76 QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG- 125
Query: 73 ASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIYLLNPAVLDR- 127
++ K+D+P+ YG + E GKV VE + IN GI + N A + R
Sbjct: 126 IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRW 183
Query: 128 -IELRPTSIEKEVFPK--IAL---EGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXX 181
+L + + E + IAL EG+ V P ++ + +
Sbjct: 184 LAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQ 243
Query: 182 XXXXXATG------------------------ANIV--GNVLVHESAQIGEGC-----LI 210
G N++ GNV + +IG GC +I
Sbjct: 244 AEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVI 303
Query: 211 GPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIKKHACISSSIIGWHSTVGQWARVEN 264
G D + P VVE + CT+ +R G + + A + + + + +G+ ++ +
Sbjct: 304 GDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGH 363
Query: 265 MTILGEDVHVCDEIYSNGGVV 285
+T LG D + D + G +
Sbjct: 364 LTYLG-DAEIGDNVNIGAGTI 383
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 30 PLALARDKLIDDTGEPF-------FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82
P LA+ LI GE F VL ++ + F E++ AS+ V +
Sbjct: 85 PDGLAQAFLI---GESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD 141
Query: 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD---------RIELRPT 133
P +YGVV ++ GK EKP N G+Y + V+D R EL T
Sbjct: 142 PERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEIT 200
Query: 134 SIEKEVFPK----IALEGKLFAMVLPGFWMDIG 162
+ + + + + G+ +A W+D G
Sbjct: 201 DVNRAYLERGQLSVEIXGRGYA------WLDTG 227
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 30 PLALARDKLIDDTGEPF-------FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82
P LA+ LI GE F VL ++ + F E++ AS+ V +
Sbjct: 94 PDGLAQAFLI---GESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD 150
Query: 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD---------RIELRPT 133
P +YGVV ++ GK EKP N G+Y + V+D R EL T
Sbjct: 151 PERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEIT 209
Query: 134 SIEKEVFPK----IALEGKLFAMVLPGFWMDIG 162
+ + + + + G+ +A W+D G
Sbjct: 210 DVNRAYLERGQLSVEIMGRGYA------WLDTG 236
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 30 PLALARDKLIDDTGEPF-------FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82
P LA+ LI GE F VL ++ + F E++ AS+ V +
Sbjct: 85 PDGLAQAFLI---GESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD 141
Query: 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD---------RIELRPT 133
P +YGVV ++ GK EKP N G+Y + V+D R EL T
Sbjct: 142 PERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEIT 200
Query: 134 SIEKEVFPK----IALEGKLFAMVLPGFWMDIG 162
+ + + + + G+ +A W+D G
Sbjct: 201 DVNRAYLERGQLSVEIMGRGYA------WLDTG 227
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 30 PLALARDKLIDDTGEPF-------FVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82
P LA+ LI GE F VL ++ + F E++ AS+ V +
Sbjct: 95 PDGLAQAFLI---GESFIGNDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD 151
Query: 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD---------RIELRPT 133
P +YGVV ++ GK EKP N G+Y + V+D R EL T
Sbjct: 152 PERYGVVEFDQG-GKAISLEEKPLEPKSNYAVTGLYFYDQQVVDIARDLKPSPRGELEIT 210
Query: 134 SIEKEVFPK----IALEGKLFAMVLPGFWMDIG 162
+ + + + + G+ +A W+D G
Sbjct: 211 DVNRAYLERGQLSVEIMGRGYA------WLDTG 237
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 248
G+ I + VH +A + EG IG + +GP C+V V + TV++ S
Sbjct: 1 GSMIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHV 50
Query: 249 IIGWHSTVGQWARVENMTILGE 270
++ H+ +G+ + +GE
Sbjct: 51 VVNGHTKIGRDNEIYQFASIGE 72
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 103/277 (37%), Gaps = 24/277 (8%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTK 79
++E LGT + + L +G + ++ +I+ +I+FH H A+I+ +
Sbjct: 72 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 131
Query: 80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIYLLNP----AVLDRIELR 131
D P YG +V ++ +V + VE+ K IN G Y+ + L I
Sbjct: 132 TDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN 190
Query: 132 PTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXA 187
E + I + K+ A L F +G D +
Sbjct: 191 NAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVALATAESVMRRRINHKHMV 249
Query: 188 TGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRI 239
G + V +V + QI ++ +G V+ +G + T+ G I
Sbjct: 250 NGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI 309
Query: 240 KKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276
++ I S + TVG +A + + LG VH+ +
Sbjct: 310 -TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 345
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/277 (20%), Positives = 103/277 (37%), Gaps = 24/277 (8%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTK 79
++E LGT + + L +G + ++ +I+ +I+FH H A+I+ +
Sbjct: 81 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 140
Query: 80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIYLLNP----AVLDRIELR 131
D P YG +V ++ +V + VE+ K IN G Y+ + L I
Sbjct: 141 TDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFDNERLFEALKNINTN 199
Query: 132 PTSIEKEVFPKIAL----EGKLFAMVLPGFWMDIGQPRDYITGXXXXXXXXXXXXXXXXA 187
E + I + K+ A L F +G D +
Sbjct: 200 NAQGEYYITDVIGIFRETGEKVGAYTLKDFDESLG-VNDRVALATAESVMRRRINHKHMV 258
Query: 188 TGANIVG--------NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRI 239
G + V +V + QI ++ +G V+ +G + T+ G I
Sbjct: 259 NGVSFVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVI 318
Query: 240 KKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276
++ I S + TVG +A + + LG VH+ +
Sbjct: 319 -TNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGN 354
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVL-NSDVISEYPFAEMIEFHKAHGGEASIMVTK 79
++E LGT + + L +G + ++ +I+ +I+FH H A+I+ +
Sbjct: 72 QSEQLGTGHAVMMTEPILEGLSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAE 131
Query: 80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIYLLN 121
D P YG +V ++ +V + VE+ K IN G Y+ +
Sbjct: 132 TDNPFGYGRIVRNDN-AEVLRIVEQKDATDFEKQIKEINTGTYVFD 176
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHS 254
+ VH +A + EG IG + +GP C+V V + TV++ S ++ H+
Sbjct: 5 SAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLK----------SHVVVNGHT 54
Query: 255 TVGQWARVENMTILGE 270
+G+ + +GE
Sbjct: 55 KIGRDNEIYQFASIGE 70
>pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
Length = 331
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 24/119 (20%)
Query: 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFH--------KAHGGE 72
+ E LGT + A PFF + D++ Y +I K GG
Sbjct: 76 QAEQLGTGHAMQQA---------APFFADDEDILMLYGDVPLISVETLQRLRDAKPQGG- 125
Query: 73 ASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNK----INAGIYLLNPAVLDR 127
++ K+D+P+ YG + E GKV VE + IN GI + N A + R
Sbjct: 126 IGLLTVKLDDPTGYGRITRE--NGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKR 182
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 192 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV 233
I GNV + +IG GC +IG D + P VVE + CT+
Sbjct: 280 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTI 326
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEA 73
IK + + +PLG + LA L DD +L D++ E + +A G +
Sbjct: 105 IKAVPVTQDKPLGLGHAVGLAESVLDDDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGGS 164
Query: 74 SIMVTKVDEP--SKYGVVVMEEST-----GKVEKFVEKPKL-FVGNKINA-GIYLLNPAV 124
+ +V E SKYG+ +E T KV+ VEKP + +++ A G YLL+ +
Sbjct: 165 VLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDAPSRLAATGRYLLDRKI 224
Query: 125 LDRI 128
D +
Sbjct: 225 FDAL 228
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 248
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 30 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 79
Query: 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282
++G + +GQ + +GE VC ++ G
Sbjct: 80 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 110
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 13/94 (13%)
Query: 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSS 248
GA + L+H +A I +I DV +GP C++ V T+ G ++ H
Sbjct: 1 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQV-----TIGAGTKLHSHV----- 50
Query: 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282
++G + +GQ + +GE VC ++ G
Sbjct: 51 VVGGFTRIGQNNEIFQFASVGE---VCQDLKYKG 81
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 210 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILG 269
+G V +G GCV L + V IK ++ + SI+G + +G ++R+ L
Sbjct: 286 LGDRVKIGTGCV------LKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELA 339
Query: 270 EDVHV 274
+ HV
Sbjct: 340 AETHV 344
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 192 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS 246
I GNV + + +IG GC +IG DV + P V+E + + + R++ A ++
Sbjct: 280 IEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAELA 339
Query: 247 SSI-IG-----WHSTVGQWARVENMTILGE 270
+ +G STVG+ ++V ++T +G+
Sbjct: 340 AETHVGNFVEIKKSTVGKGSKVNHLTYVGD 369
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 196 VLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 228
VL+H SA + +IG V+VGP C + S V+L
Sbjct: 8 VLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKL 40
>pdb|3TWD|A Chain A, Glmuc1 In Complex With An Antibacterial Inhibitor
pdb|3TWD|B Chain B, Glmuc1 In Complex With An Antibacterial Inhibitor
Length = 222
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 192 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 240
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 49 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 108
Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 285
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 109 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 152
>pdb|4AA7|A Chain A, E.Coli Glmu In Complex With An Antibacterial Inhibitor
pdb|4AA7|B Chain B, E.Coli Glmu In Complex With An Antibacterial Inhibitor
Length = 231
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 192 IVGNVLVHESAQIGEGC-----LIGPDVAVGPGCVVESGVRLSRCTV-----MR-GVRIK 240
I GNV + +IG GC +IG D + P VVE + CT+ +R G +
Sbjct: 55 IEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELL 114
Query: 241 KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 285
+ A + + + + +G+ ++ ++T LG D + D + G +
Sbjct: 115 EGAHVGNFVEMKKARLGKGSKAGHLTYLG-DAEIGDNVNIGAGTI 158
>pdb|3R0S|A Chain A, Udp-N-Acetylglucosamine Acyltransferase From Campylobacter
Jejuni
Length = 266
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMR-GVRIKKHACISSSIIGWHSTV 256
+H SA I EG +G DV + V ++ V++ G RI +S + IG HS V
Sbjct: 7 IHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGARI-----LSDTTIGDHSRV 61
Query: 257 GQWA 260
+A
Sbjct: 62 FSYA 65
>pdb|2L9N|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome
(Sbds) Protein
Length = 252
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 25/92 (27%)
Query: 224 SGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTV-------------------GQWAR 261
+ +RL+ V+R R K AC + ++GW S V GQ A+
Sbjct: 10 NQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAK 69
Query: 262 VENM-TILGED--VHVCDEIYSNGGVVLPHKE 290
E++ + G D +C +I + G V + KE
Sbjct: 70 KEDLISAFGTDDQTEICKQILTKGEVQVSDKE 101
>pdb|2KDO|A Chain A, Structure Of The Human Shwachman-Bodian-Diamond Syndrome
Protein, Sbds
Length = 252
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 25/92 (27%)
Query: 224 SGVRLSRCTVMRGVRIKKH---ACISSSIIGWHSTV-------------------GQWAR 261
+ +RL+ V+R R K AC + ++GW S V GQ A+
Sbjct: 10 NQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAK 69
Query: 262 VENM-TILGED--VHVCDEIYSNGGVVLPHKE 290
E++ + G D +C +I + G V + KE
Sbjct: 70 KEDLISAFGTDDQTEICKQILTKGEVQVSDKE 101
>pdb|3P47|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Cysteine
Length = 315
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 188 TGANIVGNVLVHESAQIGEGCLIGPDV 214
TGA ++GN++V +IG C I DV
Sbjct: 236 TGAKVLGNIIVGSHVRIGANCWIDRDV 262
>pdb|3P1B|A Chain A, Crystal Structure Of The Native Serine Acetyltransferase 1
From Entamoeba Histolytica
Length = 314
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 188 TGANIVGNVLVHESAQIGEGCLIGPDV 214
TGA ++GN++V +IG C I DV
Sbjct: 235 TGAKVLGNIIVGSHVRIGANCWIDRDV 261
>pdb|3Q1X|A Chain A, Crystal Structure Of Entamoeba Histolytica Serine
Acetyltransferase 1 In Complex With L-Serine
Length = 313
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 188 TGANIVGNVLVHESAQIGEGCLIGPDV 214
TGA ++GN++V +IG C I DV
Sbjct: 234 TGAKVLGNIIVGSHVRIGANCWIDRDV 260
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 15/100 (15%)
Query: 190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVV------ESGVRL-SRCTVMRGVRIKKH 242
A + NV + +A I G +G +V +G GC V +G RL + T+ ++I ++
Sbjct: 110 AKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQN 169
Query: 243 ACISSSII------GWHSTVGQWARVENM--TILGEDVHV 274
I S + G+ + G W ++ + I+G+ V +
Sbjct: 170 CLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEI 209
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 201 SAQIGEGCLIGPDVAVGPGCVVESGVRL-------SRCTVMRGVRIKKHACISSSIIGWH 253
SA I +G +V++G V+ESGV L + C V + +I + + +++ +H
Sbjct: 103 SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYH 162
Query: 254 S-TVGQWARVENMTILGED 271
+GQ +++ T++G D
Sbjct: 163 EIQIGQNCLIQSGTVVGAD 181
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Query: 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVG 257
+H +A + + P +VG V+ESG R+ GV I H C +IG S +G
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIG-----AGVSIGAH-C----VIGARSVIG 171
Query: 258 QWARVENMTILGEDVHVCDEIYSNGGVVL 286
+ + L DV + + G V+
Sbjct: 172 EGGWLAPRVTLYHDVTIGARVSIQSGAVI 200
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 197 LVHESAQIGEGCLIG-----PDVAVGPGCVV 222
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 197 LVHESAQIGEGCLIG-----PDVAVGPGCVV 222
L+H A IG+GC IG + VG GCVV
Sbjct: 125 LIHGPAYIGDGCFIGFRSTVFNARVGAGCVV 155
>pdb|4E75|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|D Chain D, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|E Chain E, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E75|F Chain F, Structure Of Lpxd From Acinetobacter Baumannii At 2.85a
Resolution (p21 Form)
pdb|4E79|A Chain A, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|B Chain B, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
pdb|4E79|C Chain C, Structure Of Lpxd From Acinetobacter Baumannii At 2.66a
Resolution (p4322 Form)
Length = 357
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 198 VHESAQIGEGCLIGPDVAVGPGCVV-ESGVRLSRCTVMRGVRIKKHACISSSI-IGWHST 255
+H SA I E IG V +G CVV ++ V S + V + K I S + I S
Sbjct: 111 IHPSAVISETAYIGHYVVIGENCVVGDNTVIQSHTKLDDNVEVGKDCFIDSYVTITGSSK 170
Query: 256 VGQWARVENMTILG 269
+ R+ + T++G
Sbjct: 171 LRDRVRIHSSTVIG 184
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 218 PGCVVESGVRLSRCTVMRGVRIKKHACISSSI-IGWHSTVGQWARVENMTILGED 271
P ++E G +L V + +A + S++ IG +T+G + +E T +GED
Sbjct: 27 PTAIIEPGAQLHET-----VEVGPYAIVGSNVTIGARTTIGSHSVIEGHTTIGED 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,698,339
Number of Sequences: 62578
Number of extensions: 341149
Number of successful extensions: 936
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 84
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)