Query 022113
Match_columns 302
No_of_seqs 167 out of 2306
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022113.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022113hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 3.7E-55 8E-60 368.3 23.9 301 2-302 71-371 (371)
2 COG1208 GCD1 Nucleoside-diphos 100.0 2.8E-43 6.2E-48 315.7 33.8 279 2-292 62-351 (358)
3 KOG1460 GDP-mannose pyrophosph 100.0 7.3E-43 1.6E-47 289.8 19.6 300 2-302 66-407 (407)
4 PRK05293 glgC glucose-1-phosph 100.0 3.2E-38 6.8E-43 287.7 27.9 276 2-280 65-379 (380)
5 COG0448 GlgC ADP-glucose pyrop 100.0 4.4E-38 9.6E-43 274.5 24.2 253 24-283 100-363 (393)
6 TIGR01208 rmlA_long glucose-1- 100.0 6E-37 1.3E-41 276.6 32.3 277 3-289 62-348 (353)
7 COG1207 GlmU N-acetylglucosami 100.0 6.8E-36 1.5E-40 260.8 27.2 264 15-279 68-352 (460)
8 PLN02241 glucose-1-phosphate a 100.0 8.5E-36 1.9E-40 275.4 29.1 256 23-283 99-420 (436)
9 PRK02862 glgC glucose-1-phosph 100.0 1.8E-35 3.8E-40 272.6 29.8 259 25-288 98-425 (429)
10 PRK00844 glgC glucose-1-phosph 100.0 1.7E-35 3.8E-40 271.3 28.6 236 24-262 98-380 (407)
11 PRK00725 glgC glucose-1-phosph 100.0 3.8E-35 8.3E-40 270.0 27.7 255 21-283 107-395 (425)
12 TIGR02091 glgC glucose-1-phosp 100.0 6.9E-34 1.5E-38 257.5 30.6 252 24-281 92-360 (361)
13 PRK14355 glmU bifunctional N-a 100.0 9.1E-34 2E-38 264.3 31.2 262 15-278 69-351 (459)
14 TIGR02092 glgD glucose-1-phosp 100.0 3.4E-34 7.3E-39 260.1 26.4 274 2-283 65-356 (369)
15 PRK14352 glmU bifunctional N-a 100.0 3.8E-32 8.3E-37 254.6 31.0 262 14-277 70-352 (482)
16 PRK14356 glmU bifunctional N-a 100.0 4.9E-31 1.1E-35 246.0 28.2 263 14-280 69-354 (456)
17 PRK14358 glmU bifunctional N-a 100.0 5.2E-31 1.1E-35 246.3 28.0 266 13-280 70-355 (481)
18 TIGR01173 glmU UDP-N-acetylglu 100.0 2.4E-30 5.1E-35 241.2 28.6 260 15-279 65-345 (451)
19 COG1209 RfbA dTDP-glucose pyro 100.0 5.2E-31 1.1E-35 218.6 19.0 171 2-177 62-238 (286)
20 PRK14353 glmU bifunctional N-a 100.0 2.5E-29 5.5E-34 233.8 30.5 232 12-247 69-338 (446)
21 PRK14359 glmU bifunctional N-a 100.0 1.3E-28 2.8E-33 228.2 31.4 239 15-262 68-357 (430)
22 PRK09451 glmU bifunctional N-a 100.0 1.6E-29 3.4E-34 235.7 25.1 253 15-278 70-348 (456)
23 PRK14357 glmU bifunctional N-a 100.0 7.4E-29 1.6E-33 230.9 27.4 255 15-278 63-337 (448)
24 PRK14354 glmU bifunctional N-a 100.0 2.1E-28 4.6E-33 228.4 28.0 263 15-280 66-349 (458)
25 PRK14360 glmU bifunctional N-a 100.0 5.9E-27 1.3E-31 218.2 27.6 263 15-280 67-346 (450)
26 KOG1461 Translation initiation 99.9 3.8E-26 8.2E-31 207.5 23.3 280 2-286 85-423 (673)
27 KOG1462 Translation initiation 99.9 4.5E-26 9.7E-31 196.3 21.0 256 24-284 96-421 (433)
28 cd06428 M1P_guanylylT_A_like_N 99.9 1.5E-25 3.3E-30 193.7 18.8 171 3-173 63-256 (257)
29 cd06425 M1P_guanylylT_B_like_N 99.9 4E-25 8.7E-30 188.3 20.6 171 3-174 62-232 (233)
30 PRK15480 glucose-1-phosphate t 99.9 5.7E-24 1.2E-28 185.7 20.3 168 3-175 66-241 (292)
31 TIGR01105 galF UTP-glucose-1-p 99.9 1.1E-23 2.4E-28 184.4 20.7 161 11-174 94-276 (297)
32 TIGR01207 rmlA glucose-1-phosp 99.9 8.2E-24 1.8E-28 184.5 19.3 168 3-175 62-237 (286)
33 PF00483 NTP_transferase: Nucl 99.9 4.1E-24 8.8E-29 183.7 15.3 172 3-176 63-247 (248)
34 cd02538 G1P_TT_short G1P_TT_sh 99.9 2.4E-23 5.3E-28 178.1 19.0 162 9-174 68-237 (240)
35 PRK10122 GalU regulator GalF; 99.9 5.8E-23 1.3E-27 180.2 20.1 160 12-174 95-276 (297)
36 TIGR02623 G1P_cyt_trans glucos 99.9 7.9E-23 1.7E-27 176.1 19.3 152 16-175 94-245 (254)
37 PRK13389 UTP--glucose-1-phosph 99.9 1.1E-21 2.3E-26 172.5 19.4 158 13-174 101-279 (302)
38 cd04189 G1P_TT_long G1P_TT_lon 99.9 9E-21 1.9E-25 161.8 20.5 168 3-176 62-235 (236)
39 cd06422 NTP_transferase_like_1 99.9 7.5E-21 1.6E-25 160.7 17.2 152 11-170 67-221 (221)
40 cd06915 NTP_transferase_WcbM_l 99.9 3.9E-20 8.4E-25 156.3 19.4 155 12-170 68-222 (223)
41 cd02524 G1P_cytidylyltransfera 99.9 4.2E-20 9E-25 159.3 19.1 149 20-174 97-245 (253)
42 cd02541 UGPase_prokaryotic Pro 99.9 7.2E-20 1.6E-24 159.1 20.2 158 13-174 92-264 (267)
43 cd04181 NTP_transferase NTP_tr 99.9 5.4E-20 1.2E-24 154.8 18.2 147 12-162 68-217 (217)
44 cd06426 NTP_transferase_like_2 99.8 1.2E-19 2.6E-24 153.2 18.7 154 10-171 66-220 (220)
45 TIGR01099 galU UTP-glucose-1-p 99.8 9.8E-20 2.1E-24 157.7 18.3 153 14-170 93-260 (260)
46 COG1210 GalU UDP-glucose pyrop 99.8 1.7E-19 3.8E-24 150.2 17.8 167 4-174 86-269 (291)
47 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 7E-20 1.5E-24 154.4 11.5 150 138-293 32-213 (231)
48 COG0663 PaaY Carbonic anhydras 99.7 1.2E-16 2.6E-21 125.8 12.0 111 182-292 16-134 (176)
49 TIGR02287 PaaY phenylacetic ac 99.7 1.9E-16 4E-21 129.7 13.2 110 182-291 13-130 (192)
50 cd04745 LbH_paaY_like paaY-lik 99.7 3.2E-16 6.8E-21 124.9 14.2 108 183-290 6-121 (155)
51 cd05636 LbH_G1P_TT_C_like Puta 99.7 4.1E-16 8.8E-21 125.4 14.3 110 182-291 22-155 (163)
52 cd04646 LbH_Dynactin_6 Dynacti 99.7 7.1E-16 1.5E-20 123.7 13.9 110 182-291 4-127 (164)
53 PRK13627 carnitine operon prot 99.7 5.1E-16 1.1E-20 127.6 13.0 107 183-289 16-130 (196)
54 PLN02296 carbonate dehydratase 99.7 6.9E-16 1.5E-20 132.4 13.7 109 183-291 58-180 (269)
55 PLN02472 uncharacterized prote 99.7 1.2E-15 2.7E-20 129.1 14.0 109 183-291 65-187 (246)
56 COG1044 LpxD UDP-3-O-[3-hydrox 99.7 7.5E-15 1.6E-19 126.5 17.6 101 184-284 112-243 (338)
57 cd04183 GT2_BcE_like GT2_BcbE_ 99.7 7E-15 1.5E-19 125.0 16.6 148 13-167 71-230 (231)
58 TIGR00965 dapD 2,3,4,5-tetrahy 99.6 1.7E-15 3.6E-20 128.2 12.1 107 183-290 100-216 (269)
59 cd04650 LbH_FBP Ferripyochelin 99.6 5.5E-15 1.2E-19 117.4 14.0 109 183-291 6-122 (154)
60 cd04645 LbH_gamma_CA_like Gamm 99.6 1.1E-14 2.3E-19 115.9 13.9 110 182-291 4-121 (153)
61 PRK00892 lpxD UDP-3-O-[3-hydro 99.6 2.8E-14 6E-19 128.1 17.0 82 209-290 144-250 (343)
62 cd05824 LbH_M1P_guanylylT_C Ma 99.6 1.3E-14 2.9E-19 102.2 10.8 79 198-276 2-80 (80)
63 cd03350 LbH_THP_succinylT 2,3, 99.6 2.7E-14 5.9E-19 111.6 13.5 105 185-289 3-117 (139)
64 cd05636 LbH_G1P_TT_C_like Puta 99.6 3E-14 6.6E-19 114.5 13.7 98 184-282 6-104 (163)
65 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 1.9E-14 4E-19 124.0 12.7 51 232-282 104-155 (254)
66 cd02517 CMP-KDO-Synthetase CMP 99.6 9.2E-14 2E-18 118.7 15.9 158 12-172 61-238 (239)
67 PRK05450 3-deoxy-manno-octulos 99.6 1.4E-13 3.1E-18 118.0 16.8 160 11-173 60-243 (245)
68 cd03359 LbH_Dynactin_5 Dynacti 99.6 5.8E-14 1.3E-18 112.5 13.4 107 184-290 8-132 (161)
69 TIGR03570 NeuD_NnaD sugar O-ac 99.6 1.6E-13 3.4E-18 113.9 16.4 126 156-282 61-188 (201)
70 cd03360 LbH_AT_putative Putati 99.6 1.6E-13 3.5E-18 113.1 16.3 98 185-282 86-185 (197)
71 cd02509 GDP-M1P_Guanylyltransf 99.6 1.8E-14 3.9E-19 125.4 10.8 154 13-166 72-273 (274)
72 cd03356 LbH_G1P_AT_C_like Left 99.6 4.1E-14 9E-19 99.5 10.6 79 197-276 1-79 (79)
73 PRK05289 UDP-N-acetylglucosami 99.6 5E-14 1.1E-18 121.6 13.1 48 231-278 81-136 (262)
74 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.6 5.1E-14 1.1E-18 121.2 13.1 104 186-289 20-144 (254)
75 cd04197 eIF-2B_epsilon_N The N 99.6 4.7E-14 1E-18 118.8 12.4 108 14-125 77-217 (217)
76 TIGR01853 lipid_A_lpxD UDP-3-O 99.6 9.6E-14 2.1E-18 123.1 14.9 104 158-262 67-172 (324)
77 cd02523 PC_cytidylyltransferas 99.6 1.2E-13 2.6E-18 117.3 14.9 149 13-170 67-228 (229)
78 TIGR01852 lipid_A_lpxA acyl-[a 99.6 6.1E-14 1.3E-18 120.7 13.2 72 214-285 77-157 (254)
79 cd02508 ADP_Glucose_PP ADP-glu 99.6 2.9E-14 6.2E-19 118.6 10.7 107 21-161 89-200 (200)
80 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 5.7E-14 1.2E-18 120.0 12.1 102 187-288 101-217 (272)
81 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 6.8E-14 1.5E-18 98.8 10.5 80 197-278 1-80 (81)
82 TIGR01479 GMP_PMI mannose-1-ph 99.5 1.1E-13 2.3E-18 129.0 14.8 160 12-171 70-281 (468)
83 TIGR01852 lipid_A_lpxA acyl-[a 99.5 1.5E-13 3.3E-18 118.3 13.8 101 188-288 21-142 (254)
84 cd05787 LbH_eIF2B_epsilon eIF- 99.5 1E-13 2.2E-18 97.4 10.3 78 198-276 2-79 (79)
85 KOG1461 Translation initiation 99.5 1.9E-14 4.1E-19 131.8 8.1 95 195-290 315-409 (673)
86 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 7.9E-14 1.7E-18 120.3 11.2 107 184-290 100-231 (338)
87 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 2.1E-13 4.6E-18 112.7 13.3 91 189-279 9-99 (193)
88 PRK05289 UDP-N-acetylglucosami 99.5 1.4E-13 3.1E-18 118.7 12.7 60 186-245 5-65 (262)
89 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 1.8E-13 3.9E-18 121.3 13.0 77 186-262 112-210 (324)
90 cd03358 LbH_WxcM_N_like WcxM-l 99.5 1.7E-13 3.7E-18 104.1 10.6 98 184-282 5-102 (119)
91 cd00710 LbH_gamma_CA Gamma car 99.5 7.7E-13 1.7E-17 106.6 14.4 99 182-281 7-115 (167)
92 PRK12461 UDP-N-acetylglucosami 99.5 3.2E-13 7E-18 115.7 12.6 15 231-245 78-92 (255)
93 cd04649 LbH_THP_succinylT_puta 99.5 8.2E-13 1.8E-17 101.4 13.0 97 186-286 4-110 (147)
94 PRK00892 lpxD UDP-3-O-[3-hydro 99.5 4.2E-13 9.2E-18 120.5 13.4 42 86-128 25-68 (343)
95 cd03350 LbH_THP_succinylT 2,3, 99.5 7.1E-13 1.5E-17 103.6 13.0 44 185-228 15-58 (139)
96 COG1043 LpxA Acyl-[acyl carrie 99.5 2.8E-13 6.2E-18 110.7 10.6 110 182-291 14-150 (260)
97 cd03360 LbH_AT_putative Putati 99.5 1E-12 2.3E-17 108.3 14.3 104 186-289 81-186 (197)
98 PRK12461 UDP-N-acetylglucosami 99.5 4.2E-13 9.2E-18 114.9 12.2 77 186-262 2-92 (255)
99 cd02540 GT2_GlmU_N_bac N-termi 99.5 1.1E-12 2.3E-17 111.3 14.5 151 14-166 62-228 (229)
100 TIGR03308 phn_thr-fam phosphon 99.5 8.3E-13 1.8E-17 109.5 13.4 97 183-281 8-142 (204)
101 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 7.2E-13 1.6E-17 112.3 12.5 94 183-276 106-214 (269)
102 cd03352 LbH_LpxD UDP-3-O-acyl- 99.5 1.6E-12 3.4E-17 108.6 13.8 23 265-287 150-172 (205)
103 TIGR03570 NeuD_NnaD sugar O-ac 99.4 2.3E-12 5E-17 106.9 14.2 103 186-288 84-188 (201)
104 cd04745 LbH_paaY_like paaY-lik 99.4 1.3E-12 2.8E-17 104.1 11.9 23 217-239 65-87 (155)
105 PRK13368 3-deoxy-manno-octulos 99.4 5.1E-12 1.1E-16 107.9 15.5 155 11-172 61-236 (238)
106 cd03353 LbH_GlmU_C N-acetyl-gl 99.4 3.5E-12 7.5E-17 105.4 14.0 60 185-245 23-82 (193)
107 TIGR02287 PaaY phenylacetic ac 99.4 2.5E-12 5.4E-17 105.4 11.3 62 201-262 14-84 (192)
108 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 2.6E-12 5.7E-17 108.5 11.6 29 256-284 163-191 (231)
109 PRK13627 carnitine operon prot 99.4 3.5E-12 7.5E-17 104.9 11.9 86 199-285 14-108 (196)
110 TIGR03308 phn_thr-fam phosphon 99.4 4.1E-12 8.9E-17 105.3 12.0 66 197-263 4-69 (204)
111 cd04651 LbH_G1P_AT_C Glucose-1 99.4 3E-12 6.5E-17 94.8 10.0 79 202-283 2-80 (104)
112 cd04646 LbH_Dynactin_6 Dynacti 99.4 4.6E-12 1E-16 101.6 11.8 27 219-245 72-98 (164)
113 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 4.6E-12 1E-16 108.4 12.0 99 186-286 175-287 (341)
114 cd03358 LbH_WxcM_N_like WcxM-l 99.4 6.6E-12 1.4E-16 95.4 10.6 90 199-288 2-102 (119)
115 cd05635 LbH_unknown Uncharacte 99.4 1.9E-11 4E-16 89.8 12.4 84 194-280 10-94 (101)
116 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 1.6E-11 3.4E-16 102.5 13.4 59 187-245 11-70 (205)
117 PLN02296 carbonate dehydratase 99.4 1.1E-11 2.3E-16 106.7 12.4 104 185-289 54-172 (269)
118 cd04650 LbH_FBP Ferripyochelin 99.4 1E-11 2.2E-16 98.7 11.4 26 217-242 65-90 (154)
119 PRK10502 putative acyl transfe 99.4 8.1E-12 1.8E-16 102.0 11.0 81 214-294 72-178 (182)
120 cd05787 LbH_eIF2B_epsilon eIF- 99.3 1E-11 2.2E-16 87.2 9.5 74 215-289 1-74 (79)
121 COG2171 DapD Tetrahydrodipicol 99.3 6.2E-12 1.3E-16 104.9 9.2 103 184-286 109-221 (271)
122 cd04645 LbH_gamma_CA_like Gamm 99.3 1.5E-11 3.2E-16 97.7 11.0 31 232-262 40-75 (153)
123 cd00710 LbH_gamma_CA Gamma car 99.3 4.4E-11 9.5E-16 96.4 13.7 100 184-284 27-135 (167)
124 PRK11830 dapD 2,3,4,5-tetrahyd 99.3 2.9E-11 6.4E-16 103.4 12.9 86 184-270 116-217 (272)
125 cd03356 LbH_G1P_AT_C_like Left 99.3 1.9E-11 4.1E-16 85.8 9.8 73 216-289 2-74 (79)
126 PRK14353 glmU bifunctional N-a 99.3 2.1E-11 4.5E-16 113.7 13.0 72 191-262 264-336 (446)
127 cd05635 LbH_unknown Uncharacte 99.3 2.1E-11 4.5E-16 89.5 10.1 78 183-262 17-94 (101)
128 PRK14360 glmU bifunctional N-a 99.3 1.6E-11 3.5E-16 114.6 11.9 59 202-260 320-378 (450)
129 PRK09451 glmU bifunctional N-a 99.3 2.3E-11 4.9E-16 113.8 12.6 59 184-243 272-330 (456)
130 COG1043 LpxA Acyl-[acyl carrie 99.3 1.2E-11 2.6E-16 101.2 9.3 107 184-290 4-131 (260)
131 cd03359 LbH_Dynactin_5 Dynacti 99.3 5.5E-11 1.2E-15 95.3 12.5 95 183-282 27-136 (161)
132 PRK14355 glmU bifunctional N-a 99.3 3.9E-11 8.5E-16 112.2 13.5 61 184-245 275-335 (459)
133 PLN02472 uncharacterized prote 99.3 4.2E-11 9.1E-16 101.6 12.4 62 184-245 84-158 (246)
134 TIGR01173 glmU UDP-N-acetylglu 99.3 2.9E-11 6.2E-16 112.9 12.3 58 183-241 267-324 (451)
135 cd04652 LbH_eIF2B_gamma_C eIF- 99.3 3.7E-11 8E-16 84.7 9.9 75 184-260 6-80 (81)
136 cd04651 LbH_G1P_AT_C Glucose-1 99.3 5.8E-11 1.3E-15 87.9 11.3 79 184-265 2-80 (104)
137 TIGR03535 DapD_actino 2,3,4,5- 99.3 4.3E-11 9.4E-16 102.0 11.9 97 184-285 154-261 (319)
138 COG0663 PaaY Carbonic anhydras 99.3 3.1E-11 6.6E-16 95.4 9.9 54 230-284 50-108 (176)
139 KOG1462 Translation initiation 99.3 1.2E-11 2.7E-16 107.6 7.3 84 208-292 329-412 (433)
140 PRK14356 glmU bifunctional N-a 99.3 4.9E-11 1.1E-15 111.5 11.9 43 217-259 343-385 (456)
141 PRK09677 putative lipopolysacc 99.3 3E-10 6.5E-15 93.6 15.0 88 195-282 43-165 (192)
142 PRK11132 cysE serine acetyltra 99.2 9.4E-11 2E-15 100.4 12.3 97 191-292 137-245 (273)
143 PLN02694 serine O-acetyltransf 99.2 4.7E-11 1E-15 102.3 9.7 95 196-293 161-265 (294)
144 PRK14352 glmU bifunctional N-a 99.2 1.2E-10 2.6E-15 109.6 13.4 31 232-262 359-389 (482)
145 PRK14358 glmU bifunctional N-a 99.2 6.2E-11 1.3E-15 111.3 11.3 63 182-245 275-337 (481)
146 PRK09527 lacA galactoside O-ac 99.2 1.4E-10 3.1E-15 95.7 12.1 46 247-292 131-183 (203)
147 PRK10092 maltose O-acetyltrans 99.2 1.5E-10 3.3E-15 94.2 11.8 36 247-282 129-164 (183)
148 PRK14359 glmU bifunctional N-a 99.2 1.2E-10 2.5E-15 108.2 12.4 65 190-255 254-323 (430)
149 cd03354 LbH_SAT Serine acetylt 99.2 1.4E-10 3.1E-15 85.4 10.2 82 197-283 4-90 (101)
150 TIGR01172 cysE serine O-acetyl 99.2 1.4E-10 3.1E-15 92.8 10.9 38 246-283 112-149 (162)
151 KOG3121 Dynactin, subunit p25 99.2 3E-11 6.4E-16 90.6 6.4 93 195-287 33-141 (184)
152 cd04647 LbH_MAT_like Maltose O 99.2 1.7E-10 3.6E-15 86.1 10.5 86 196-281 2-92 (109)
153 PRK14357 glmU bifunctional N-a 99.2 1.1E-10 2.5E-15 108.8 11.7 12 27-38 103-114 (448)
154 PRK14354 glmU bifunctional N-a 99.2 1.5E-10 3.3E-15 108.3 12.3 55 205-259 326-380 (458)
155 cd04649 LbH_THP_succinylT_puta 99.2 2.3E-10 5E-15 88.0 10.6 62 183-245 13-82 (147)
156 PRK05293 glgC glucose-1-phosph 99.2 2.3E-10 5.1E-15 104.5 12.1 89 191-283 272-360 (380)
157 cd04198 eIF-2B_gamma_N The N-t 99.2 1.8E-10 3.9E-15 96.7 10.0 109 13-125 75-214 (214)
158 COG0836 {ManC} Mannose-1-phosp 99.2 4.4E-10 9.6E-15 96.4 12.2 153 18-170 80-281 (333)
159 cd00208 LbetaH Left-handed par 99.2 2.6E-10 5.6E-15 79.5 9.0 76 197-280 2-77 (78)
160 cd05824 LbH_M1P_guanylylT_C Ma 99.2 3E-10 6.4E-15 79.9 9.2 56 232-288 19-74 (80)
161 cd03357 LbH_MAT_GAT Maltose O- 99.2 4E-10 8.7E-15 91.0 11.2 36 247-282 118-153 (169)
162 COG0448 GlgC ADP-glucose pyrop 99.2 1.5E-10 3.3E-15 102.3 9.0 79 180-265 282-363 (393)
163 cd02507 eIF-2B_gamma_N_like Th 99.2 1.3E-10 2.7E-15 97.8 8.3 109 13-125 77-216 (216)
164 TIGR01172 cysE serine O-acetyl 99.1 7.1E-10 1.5E-14 88.8 10.8 73 190-262 62-146 (162)
165 PLN02357 serine acetyltransfer 99.1 5.6E-10 1.2E-14 98.4 10.5 84 196-282 227-313 (360)
166 PRK10191 putative acyl transfe 99.1 7.4E-10 1.6E-14 86.5 10.1 36 248-283 93-128 (146)
167 COG1207 GlmU N-acetylglucosami 99.1 2.1E-10 4.5E-15 101.6 7.1 106 188-295 279-390 (460)
168 TIGR01208 rmlA_long glucose-1- 99.1 1.1E-09 2.4E-14 99.1 11.0 94 192-288 245-339 (353)
169 PRK00844 glgC glucose-1-phosph 99.0 9.5E-10 2.1E-14 101.3 10.0 71 210-282 312-382 (407)
170 PLN02739 serine acetyltransfer 99.0 1.1E-09 2.3E-14 95.9 9.0 46 247-292 257-309 (355)
171 PLN02694 serine O-acetyltransf 99.0 1.9E-09 4.1E-14 92.5 10.3 87 185-273 162-254 (294)
172 TIGR03535 DapD_actino 2,3,4,5- 99.0 3.4E-09 7.4E-14 90.5 11.7 96 187-286 151-256 (319)
173 TIGR02091 glgC glucose-1-phosp 99.0 1.7E-09 3.6E-14 98.2 10.5 50 213-262 310-359 (361)
174 PRK10092 maltose O-acetyltrans 99.0 7.5E-09 1.6E-13 84.3 13.1 93 189-288 59-164 (183)
175 PRK10191 putative acyl transfe 99.0 3.8E-09 8.3E-14 82.5 10.7 78 185-262 43-125 (146)
176 cd05825 LbH_wcaF_like wcaF-lik 99.0 5.8E-09 1.3E-13 77.6 11.2 85 196-282 4-91 (107)
177 cd00208 LbetaH Left-handed par 99.0 3.7E-09 8.1E-14 73.6 9.3 70 216-285 3-76 (78)
178 PRK09527 lacA galactoside O-ac 99.0 8.5E-09 1.8E-13 85.1 12.7 59 231-289 96-167 (203)
179 PRK02862 glgC glucose-1-phosph 99.0 2E-09 4.4E-14 99.7 9.9 91 192-286 289-398 (429)
180 cd03354 LbH_SAT Serine acetylt 99.0 6.9E-09 1.5E-13 76.3 10.7 78 186-263 5-88 (101)
181 PRK11132 cysE serine acetyltra 99.0 3.6E-09 7.8E-14 90.7 9.6 78 187-264 139-228 (273)
182 PRK00725 glgC glucose-1-phosph 99.0 4.3E-09 9.4E-14 97.4 10.8 71 194-266 326-396 (425)
183 cd03357 LbH_MAT_GAT Maltose O- 99.0 1.5E-08 3.2E-13 81.9 12.4 40 249-288 114-153 (169)
184 PLN02739 serine acetyltransfer 98.9 4.4E-09 9.6E-14 92.0 9.6 74 191-264 207-292 (355)
185 TIGR02092 glgD glucose-1-phosp 98.9 5.3E-09 1.1E-13 95.2 10.1 49 214-262 305-353 (369)
186 TIGR03536 DapD_gpp 2,3,4,5-tet 98.9 1E-08 2.2E-13 88.1 10.4 31 248-280 257-287 (341)
187 cd05825 LbH_wcaF_like wcaF-lik 98.9 1.6E-08 3.5E-13 75.2 10.3 57 231-287 24-90 (107)
188 PLN02917 CMP-KDO synthetase 98.9 9.2E-08 2E-12 83.9 16.6 160 12-175 107-288 (293)
189 PLN02357 serine acetyltransfer 98.9 1.2E-08 2.5E-13 90.1 10.6 75 190-264 227-313 (360)
190 COG1045 CysE Serine acetyltran 98.9 2.1E-08 4.6E-13 80.3 10.6 46 247-292 119-171 (194)
191 PRK10502 putative acyl transfe 98.9 1.4E-08 3.1E-13 82.9 9.8 98 184-283 52-170 (182)
192 COG1208 GCD1 Nucleoside-diphos 98.9 9.9E-09 2.1E-13 92.6 9.7 71 204-276 253-324 (358)
193 KOG3121 Dynactin, subunit p25 98.9 3.1E-09 6.8E-14 79.8 5.2 94 184-277 40-149 (184)
194 PRK15460 cpsB mannose-1-phosph 98.9 3.3E-08 7.2E-13 91.8 13.1 156 16-171 80-290 (478)
195 cd03349 LbH_XAT Xenobiotic acy 98.9 2.1E-08 4.5E-13 78.6 9.9 51 244-294 70-127 (145)
196 cd04647 LbH_MAT_like Maltose O 98.9 1.8E-08 4E-13 75.0 9.0 16 230-245 58-73 (109)
197 PRK09677 putative lipopolysacc 98.8 7.5E-08 1.6E-12 79.3 13.1 96 195-292 65-182 (192)
198 COG2171 DapD Tetrahydrodipicol 98.8 1.6E-08 3.4E-13 84.7 8.1 70 201-270 138-223 (271)
199 PLN02241 glucose-1-phosphate a 98.8 2.6E-08 5.7E-13 92.5 10.2 81 200-284 304-403 (436)
200 KOG4042 Dynactin subunit p27/W 98.7 1.2E-08 2.6E-13 77.3 4.1 106 183-288 14-136 (190)
201 COG1045 CysE Serine acetyltran 98.6 1.9E-07 4.2E-12 74.8 8.2 76 189-264 67-154 (194)
202 COG1213 Predicted sugar nucleo 98.6 5.8E-07 1.3E-11 74.3 10.9 158 10-180 66-234 (239)
203 TIGR02353 NRPS_term_dom non-ri 98.6 1.9E-07 4.1E-12 91.1 9.1 67 213-284 131-197 (695)
204 COG0110 WbbJ Acetyltransferase 98.6 2.7E-07 5.7E-12 75.9 8.7 98 195-292 67-176 (190)
205 TIGR02353 NRPS_term_dom non-ri 98.6 1.5E-07 3.3E-12 91.8 8.1 90 196-290 592-688 (695)
206 KOG4042 Dynactin subunit p27/W 98.5 1.4E-07 3E-12 71.6 5.3 101 195-295 8-138 (190)
207 KOG1460 GDP-mannose pyrophosph 98.5 3E-07 6.5E-12 78.0 7.2 62 213-275 288-350 (407)
208 cd03349 LbH_XAT Xenobiotic acy 98.4 2E-06 4.3E-11 67.5 9.1 38 250-287 70-107 (145)
209 KOG4750 Serine O-acetyltransfe 98.4 9.2E-07 2E-11 72.0 6.3 79 198-281 151-234 (269)
210 KOG1322 GDP-mannose pyrophosph 98.3 6.2E-07 1.4E-11 77.2 5.0 95 191-291 248-342 (371)
211 COG0110 WbbJ Acetyltransferase 98.2 1.7E-05 3.6E-10 65.2 10.2 36 251-286 122-157 (190)
212 PF07959 Fucokinase: L-fucokin 98.1 1.9E-05 4.1E-10 72.7 9.1 80 44-128 54-156 (414)
213 PF00132 Hexapep: Bacterial tr 97.9 8.7E-06 1.9E-10 47.5 2.8 32 197-228 3-34 (36)
214 COG4801 Predicted acyltransfer 97.9 7.9E-05 1.7E-09 61.2 8.2 70 214-283 34-104 (277)
215 COG4801 Predicted acyltransfer 97.8 5.6E-05 1.2E-09 62.0 6.8 60 222-281 25-84 (277)
216 PF00132 Hexapep: Bacterial tr 97.8 1.5E-05 3.4E-10 46.5 2.6 32 249-280 3-34 (36)
217 cd02513 CMP-NeuAc_Synthase CMP 97.8 0.00045 9.7E-09 58.1 12.5 135 24-172 77-221 (223)
218 PRK13412 fkp bifunctional fuco 97.8 0.00035 7.6E-09 69.9 12.3 124 45-174 154-311 (974)
219 TIGR00466 kdsB 3-deoxy-D-manno 97.8 0.0021 4.5E-08 54.9 15.7 156 10-167 56-237 (238)
220 KOG4750 Serine O-acetyltransfe 97.7 8.2E-05 1.8E-09 60.8 5.5 20 209-228 170-189 (269)
221 PF14602 Hexapep_2: Hexapeptid 97.5 0.00014 3E-09 41.7 3.7 12 267-278 19-30 (34)
222 COG1212 KdsB CMP-2-keto-3-deox 97.2 0.019 4.1E-07 47.6 14.0 163 11-176 61-244 (247)
223 TIGR03584 PseF pseudaminic aci 97.1 0.039 8.4E-07 46.5 15.0 151 7-172 54-218 (222)
224 PRK09382 ispDF bifunctional 2- 97.0 0.02 4.3E-07 52.2 13.1 129 25-174 81-212 (378)
225 TIGR00453 ispD 2-C-methyl-D-er 96.6 0.019 4.1E-07 48.0 9.5 133 26-172 76-215 (217)
226 PRK00155 ispD 2-C-methyl-D-ery 96.6 0.022 4.8E-07 48.0 9.9 135 26-175 81-223 (227)
227 cd02516 CDP-ME_synthetase CDP- 96.3 0.033 7.1E-07 46.5 9.0 139 15-168 70-216 (218)
228 TIGR03310 matur_ygfJ molybdenu 95.7 0.097 2.1E-06 42.4 9.3 117 15-168 63-186 (188)
229 PF12804 NTP_transf_3: MobA-li 94.8 0.15 3.2E-06 40.3 7.4 61 16-78 60-123 (160)
230 PRK13385 2-C-methyl-D-erythrit 93.7 0.8 1.7E-05 38.6 10.0 134 28-175 85-224 (230)
231 PF07959 Fucokinase: L-fucokin 93.4 0.17 3.7E-06 46.8 5.7 37 213-249 284-320 (414)
232 PF00535 Glycos_transf_2: Glyc 92.9 0.69 1.5E-05 35.8 8.0 72 4-79 44-116 (169)
233 PRK00317 mobA molybdopterin-gu 92.7 1.3 2.7E-05 36.2 9.5 41 25-68 74-116 (193)
234 COG2068 Uncharacterized MobA-r 91.7 2.1 4.6E-05 35.1 9.3 124 14-174 68-197 (199)
235 cd04180 UGPase_euk_like Eukary 91.3 0.021 4.5E-07 49.5 -2.8 111 2-121 69-186 (266)
236 PLN02474 UTP--glucose-1-phosph 90.9 14 0.00031 34.7 17.2 105 24-128 189-307 (469)
237 TIGR02665 molyb_mobA molybdopt 89.8 1.4 3E-05 35.6 6.9 46 22-70 70-117 (186)
238 PRK14489 putative bifunctional 88.5 4.7 0.0001 36.7 10.0 45 25-72 78-124 (366)
239 cd04188 DPG_synthase DPG_synth 88.3 2.9 6.3E-05 34.3 7.9 72 3-77 46-118 (211)
240 cd04182 GT_2_like_f GT_2_like_ 88.3 1 2.2E-05 36.2 5.0 49 22-71 71-121 (186)
241 TIGR00454 conserved hypothetic 87.1 1.6 3.6E-05 35.4 5.5 56 22-79 70-127 (183)
242 cd02503 MobA MobA catalyzes th 85.0 2.3 5E-05 34.1 5.5 48 16-66 59-109 (181)
243 PRK00560 molybdopterin-guanine 84.3 11 0.00024 30.9 9.3 111 24-172 75-189 (196)
244 cd04179 DPM_DPG-synthase_like 83.9 8.5 0.00019 30.4 8.4 71 3-77 44-115 (185)
245 TIGR03202 pucB xanthine dehydr 82.1 4 8.6E-05 33.1 5.8 47 24-70 77-125 (190)
246 COG2266 GTP:adenosylcobinamide 82.0 25 0.00054 28.3 10.4 49 12-67 62-112 (177)
247 cd00761 Glyco_tranf_GTA_type G 80.5 10 0.00022 28.2 7.4 50 14-66 52-102 (156)
248 COG1083 NeuA CMP-N-acetylneura 80.4 24 0.00052 29.4 9.5 149 9-174 60-222 (228)
249 cd06427 CESA_like_2 CESA_like_ 80.4 9 0.0002 32.2 7.6 61 14-77 59-120 (241)
250 cd04187 DPM1_like_bac Bacteria 80.3 12 0.00025 29.7 7.9 57 15-75 56-113 (181)
251 PF04519 Bactofilin: Polymer-f 78.5 4.8 0.0001 29.1 4.6 52 186-239 5-56 (101)
252 PLN02726 dolichyl-phosphate be 77.9 11 0.00025 31.6 7.5 69 5-76 58-128 (243)
253 cd06442 DPM1_like DPM1_like re 77.7 17 0.00037 29.7 8.4 59 15-76 54-113 (224)
254 cd02510 pp-GalNAc-T pp-GalNAc- 77.5 41 0.00089 29.3 11.2 56 13-71 57-113 (299)
255 PRK02726 molybdopterin-guanine 77.3 7.3 0.00016 32.0 5.9 50 16-68 68-120 (200)
256 COG1664 CcmA Integral membrane 76.4 17 0.00036 28.4 7.3 93 184-280 24-116 (146)
257 cd06423 CESA_like CESA_like is 76.1 16 0.00036 27.8 7.6 53 14-69 53-106 (180)
258 cd04193 UDPGlcNAc_PPase UDPGlc 75.8 31 0.00068 30.8 9.8 126 2-128 88-254 (323)
259 cd04195 GT2_AmsE_like GT2_AmsE 75.5 14 0.0003 29.7 7.2 60 5-69 48-108 (201)
260 COG4750 LicC CTP:phosphocholin 75.5 44 0.00096 27.5 9.5 108 5-128 60-168 (231)
261 cd02518 GT2_SpsF SpsF is a gly 72.5 56 0.0012 27.3 10.8 31 44-74 89-121 (233)
262 cd06439 CESA_like_1 CESA_like_ 71.3 20 0.00044 30.0 7.4 50 15-67 85-135 (251)
263 PRK13412 fkp bifunctional fuco 69.2 9.7 0.00021 39.1 5.5 37 226-262 332-369 (974)
264 cd04185 GT_2_like_b Subfamily 69.0 27 0.00059 28.1 7.5 52 16-67 53-105 (202)
265 TIGR01556 rhamnosyltran L-rham 67.0 18 0.00039 31.2 6.3 57 14-70 45-102 (281)
266 cd04186 GT_2_like_c Subfamily 66.2 27 0.00059 26.6 6.7 52 15-69 50-102 (166)
267 cd04196 GT_2_like_d Subfamily 66.1 37 0.0008 27.3 7.8 61 5-68 45-106 (214)
268 PRK14490 putative bifunctional 65.0 83 0.0018 28.6 10.4 39 24-65 243-283 (369)
269 cd06435 CESA_NdvC_like NdvC_li 63.7 26 0.00055 29.1 6.5 60 7-67 49-110 (236)
270 PF04519 Bactofilin: Polymer-f 63.0 13 0.00028 26.7 3.9 53 202-256 3-56 (101)
271 TIGR03552 F420_cofC 2-phospho- 61.2 9.9 0.00021 30.9 3.4 50 16-67 66-117 (195)
272 cd02525 Succinoglycan_BP_ExoA 60.9 49 0.0011 27.4 7.7 66 4-74 48-114 (249)
273 COG0746 MobA Molybdopterin-gua 60.0 21 0.00045 29.3 5.0 50 16-68 62-114 (192)
274 COG1216 Predicted glycosyltran 58.9 37 0.00079 29.9 6.8 61 13-74 55-117 (305)
275 PLN02728 2-C-methyl-D-erythrit 56.1 1.3E+02 0.0028 25.8 11.5 65 11-82 89-157 (252)
276 COG1920 Predicted nucleotidylt 55.7 80 0.0017 25.9 7.4 37 27-65 72-110 (210)
277 cd06433 GT_2_WfgS_like WfgS an 54.0 66 0.0014 25.3 7.2 50 17-69 53-103 (202)
278 cd04184 GT2_RfbC_Mx_like Myxoc 53.5 48 0.001 26.5 6.3 52 14-68 58-110 (202)
279 COG0075 Serine-pyruvate aminot 52.6 1.7E+02 0.0037 26.9 10.0 121 4-132 94-218 (383)
280 PRK11204 N-glycosyltransferase 51.8 70 0.0015 29.4 7.7 52 15-69 110-162 (420)
281 PF13641 Glyco_tranf_2_3: Glyc 51.2 27 0.00059 28.7 4.5 60 4-66 47-111 (228)
282 cd06437 CESA_CaSu_A2 Cellulose 49.6 52 0.0011 27.2 6.0 51 12-65 59-111 (232)
283 PRK10714 undecaprenyl phosphat 49.3 74 0.0016 28.3 7.2 59 12-74 63-122 (325)
284 PTZ00260 dolichyl-phosphate be 48.5 1E+02 0.0022 27.6 8.0 61 14-77 137-201 (333)
285 cd06420 GT2_Chondriotin_Pol_N 48.2 50 0.0011 25.8 5.5 61 3-66 42-104 (182)
286 cd06421 CESA_CelA_like CESA_Ce 48.0 78 0.0017 25.9 6.9 50 16-68 60-111 (234)
287 cd00897 UGPase_euk Eukaryotic 47.2 2E+02 0.0044 25.4 9.5 106 23-128 112-231 (300)
288 PRK00103 rRNA large subunit me 45.9 1E+02 0.0022 24.3 6.7 73 2-77 21-104 (157)
289 PRK00576 molybdopterin-guanine 45.6 50 0.0011 26.3 5.1 45 24-68 56-102 (178)
290 cd02520 Glucosylceramide_synth 44.3 1.5E+02 0.0031 23.8 7.8 50 14-66 58-111 (196)
291 PRK10063 putative glycosyl tra 43.4 1.3E+02 0.0029 25.4 7.6 51 15-69 59-109 (248)
292 cd04192 GT_2_like_e Subfamily 42.8 1.1E+02 0.0024 24.7 7.0 57 13-72 54-113 (229)
293 KOG2638 UDP-glucose pyrophosph 40.3 35 0.00076 31.4 3.5 54 24-78 214-273 (498)
294 cd02526 GT2_RfbF_like RfbF is 38.9 1.1E+02 0.0025 25.0 6.5 51 13-63 46-97 (237)
295 PRK10073 putative glycosyl tra 38.6 1.7E+02 0.0037 26.1 7.8 57 15-75 62-119 (328)
296 TIGR03472 HpnI hopanoid biosyn 35.6 1.6E+02 0.0036 26.6 7.4 59 6-67 89-152 (373)
297 TIGR03111 glyc2_xrt_Gpos1 puta 34.3 2.1E+02 0.0046 26.6 8.0 53 13-70 107-160 (439)
298 PTZ00339 UDP-N-acetylglucosami 34.2 4.2E+02 0.0091 25.3 11.2 106 23-128 226-349 (482)
299 COG1664 CcmA Integral membrane 33.7 1.8E+02 0.004 22.6 6.3 33 230-262 84-116 (146)
300 PLN02435 probable UDP-N-acetyl 33.0 2.7E+02 0.0059 26.6 8.4 106 23-128 237-362 (493)
301 PF13712 Glyco_tranf_2_5: Glyc 32.0 1.9E+02 0.0042 24.0 6.7 63 13-78 28-92 (217)
302 PRK10018 putative glycosyl tra 31.6 1.8E+02 0.0039 25.3 6.6 53 13-68 59-112 (279)
303 KOG2638 UDP-glucose pyrophosph 31.0 55 0.0012 30.2 3.3 22 236-257 475-496 (498)
304 cd06438 EpsO_like EpsO protein 30.2 2.7E+02 0.0058 21.8 8.6 57 12-68 49-108 (183)
305 PF02348 CTP_transf_3: Cytidyl 29.7 1.7E+02 0.0036 23.9 6.0 66 6-72 53-120 (217)
306 PRK14500 putative bifunctional 28.5 1.3E+02 0.0029 27.1 5.4 41 23-66 228-270 (346)
307 PF07997 DUF1694: Protein of u 28.2 1.5E+02 0.0033 22.2 4.9 84 2-92 26-109 (120)
308 PRK14583 hmsR N-glycosyltransf 28.1 2.2E+02 0.0049 26.5 7.1 51 16-69 132-183 (444)
309 cd02522 GT_2_like_a GT_2_like_ 25.6 2.1E+02 0.0045 23.1 5.8 43 25-70 58-101 (221)
310 cd06913 beta3GnTL1_like Beta 1 23.4 4E+02 0.0086 21.5 7.3 43 25-70 70-113 (219)
311 TIGR00246 tRNA_RlmH_YbeA rRNA 21.6 3.6E+02 0.0079 21.1 6.0 73 2-78 20-102 (153)
312 cd06434 GT2_HAS Hyaluronan syn 20.8 2.1E+02 0.0046 23.3 5.0 48 16-67 55-103 (235)
313 PF08545 ACP_syn_III: 3-Oxoacy 20.5 1.9E+02 0.0042 19.4 3.9 33 24-56 7-39 (80)
314 cd06167 LabA_like LabA_like pr 20.4 2.8E+02 0.006 21.0 5.3 32 44-79 101-132 (149)
315 PF07355 GRDB: Glycine/sarcosi 20.1 1.6E+02 0.0034 26.6 4.1 81 3-88 12-97 (349)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.7e-55 Score=368.32 Aligned_cols=301 Identities=57% Similarity=0.956 Sum_probs=287.7
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
+++.+.++.++|++|.++.|.+++||++.+..|++++..+.+.+|+|++||+++++++++|+++|++++++.|+++.+.+
T Consensus 71 ~~~~k~y~~~lgVei~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vd 150 (371)
T KOG1322|consen 71 RHLSKAYGKELGVEILASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVD 150 (371)
T ss_pred HHHHHHhhhccceEEEEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEecc
Confidence 35667778889999999999999999999999999998765568999999999999999999999999999999999999
Q ss_pred CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEec
Q 022113 82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 161 (302)
Q Consensus 82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~di 161 (302)
+|++||++..|+++|+|.+|.|||+...++.+++|+|+|+|++++.+.....++..|++|.++...++++|.++|||+|+
T Consensus 151 epSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~ptSiekEifP~~a~~~~l~a~~l~gfWmDI 230 (371)
T KOG1322|consen 151 EPSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRPTSIEKEIFPAMAEEHQLYAFDLPGFWMDI 230 (371)
T ss_pred CccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhhcccchhhhhhhhhhhcCceEEEecCchhhhc
Confidence 99999999999878999999999998778899999999999999999888888999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECC
Q 022113 162 GQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 241 (302)
Q Consensus 162 gt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 241 (302)
|+|++|+.+...+++.++...+.++.+++.+.+++++++.+.+|++|.|+++++||++|+|++++.|.+|.|+.+..++.
T Consensus 231 Gqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~ 310 (371)
T KOG1322|consen 231 GQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYET 310 (371)
T ss_pred CCHHHHHHHHHHHHhhCcccCCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceech
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccccccccCCcccC
Q 022113 242 HACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEIVM 302 (302)
Q Consensus 242 ~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~~~~~~~~~~~ 302 (302)
++.+..++++.++.||.|++|.+.++||+++.|.+.-.+..+.++|+|++..+++||.++|
T Consensus 311 ~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~~vn~g~~l~~ks~~~~v~~~~iI~ 371 (371)
T KOG1322|consen 311 HSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADEDYVNEGSGLPIKSGITVVLKPAIIM 371 (371)
T ss_pred hHHHHhhhccccccccCceEEecccEeccceEEecccccccceeEEeccceeecccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999987
No 2
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-43 Score=315.67 Aligned_cols=279 Identities=36% Similarity=0.617 Sum_probs=239.5
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
++|+++ +..++++|+|+.|.+++|||++|++|++++.. ++|++++||++++.|+.+++++|+++.+..++++.+..
T Consensus 62 ~~~~~d-~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~---~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 62 EEYFGD-GEGLGVRITYVVEKEPLGTAGALKNALDLLGG---DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred HHHHhc-ccccCCceEEEecCCcCccHHHHHHHHHhcCC---CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 445555 44578999999999999999999999999975 79999999999999999999999998888889898888
Q ss_pred CCCCcceEEEeCCCCcEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccC-CCCCccccchHHHHhcCc-EEEEEecCe
Q 022113 82 EPSKYGVVVMEESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIEL-RPTSIEKEVFPKIALEGK-LFAMVLPGF 157 (302)
Q Consensus 82 ~~~~~g~v~~d~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~-~~~~~~~~~~~~l~~~~~-v~~~~~~g~ 157 (302)
++..||.+..++.++++.+|.|||. ...++++++|+|+|++++|+.++. ...++..++++.+++++. ++++.++|+
T Consensus 138 ~~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~~~~~~l~~~~~~v~~~~~~g~ 217 (358)
T COG1208 138 DPSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKGERFDFEEELLPALAAKGEDVYGYVFEGY 217 (358)
T ss_pred CCCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccCCcccchhhHHHHHHhCCCcEEEEEeCCe
Confidence 8889999998853469999999994 456789999999999999997764 345666679999999987 999999999
Q ss_pred eEecCChHHHHHHHHHHHHhhccccccc-------cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec
Q 022113 158 WMDIGQPRDYITGLRLYLDSLRKKSSLK-------LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 230 (302)
Q Consensus 158 ~~digt~~~~~~a~~~~l~~~~~~~~~~-------~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~ 230 (302)
|+|+|+|++|+++++.+++......... ... +.+.+++++++++.|+.++.|+++++||++|.|++++.|.+
T Consensus 218 W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~ 296 (358)
T COG1208 218 WLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN 296 (358)
T ss_pred EEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe
Confidence 9999999999999998876433222111 222 78899999999999999999999999999999999999999
Q ss_pred eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcccc
Q 022113 231 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 292 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~ 292 (302)
|+|+++|.|++++++.+|+|+++|.||+.. .+++ +.++.++.+.++++++++.+.
T Consensus 297 Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~------~i~d-~~~g~~~~i~~g~~~~~~~~~ 351 (358)
T COG1208 297 SIIMDNVVIGHGSYIGDSIIGENCKIGASL------IIGD-VVIGINSEILPGVVVGPGSVV 351 (358)
T ss_pred eEEEcCCEECCCCEEeeeEEcCCcEECCce------eecc-eEecCceEEcCceEeCCCccc
Confidence 999999999999999999999999999922 2777 777777777777777766544
No 3
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-43 Score=289.75 Aligned_cols=300 Identities=37% Similarity=0.692 Sum_probs=267.7
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
.+|+..+...+.+.|+|..|..++|||++|+..++.+.....+.+.++++|.-+++++++|++.|+.++..+|+++.+..
T Consensus 66 ~~fis~~~~e~~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs 145 (407)
T KOG1460|consen 66 TDFISAIQQEFKVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVS 145 (407)
T ss_pred HHHHHHHHhhcccchhhhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEec
Confidence 46778888889999999999999999999999999997666689999999999999999999999999999999998874
Q ss_pred --CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccC----C-------------------CCCcc
Q 022113 82 --EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIEL----R-------------------PTSIE 136 (302)
Q Consensus 82 --~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~----~-------------------~~~~~ 136 (302)
+...||.+.-|+++++++.+.|||..+.++.+++|+|+|++++|+.+.. + .-.++
T Consensus 146 ~e~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d~irLe 225 (407)
T KOG1460|consen 146 REQASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPADFIRLE 225 (407)
T ss_pred HhHhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccceEEee
Confidence 5578999999988999999999999999999999999999999976631 0 01234
Q ss_pred ccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhccccccccccC----ceEecceEEcCCcEECCCCEECC
Q 022113 137 KEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATG----ANIVGNVLVHESAQIGEGCLIGP 212 (302)
Q Consensus 137 ~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~----~~i~~~~~i~~~~~i~~~~~i~~ 212 (302)
.+++..++..+++++|.-+++|..+.|+-+-+.+++.++...+....+++.++ +.|.++++|+|+++|.+.+.|||
T Consensus 226 qDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~a~IigdVyIhPsakvhptAkiGP 305 (407)
T KOG1460|consen 226 QDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQAEIIGDVYIHPSAKVHPTAKIGP 305 (407)
T ss_pred chhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCCceEEeeeEEcCcceeCCccccCC
Confidence 55677788889999999999999999999999999999887776666666533 56999999999999999999999
Q ss_pred CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEcc-------------CcEECCCcEECCceE
Q 022113 213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVEN-------------MTILGEDVHVCDEIY 279 (302)
Q Consensus 213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-------------~~~i~~~~~v~~~~~ 279 (302)
|+.||.+++||++++|.+|+|.++|.|.+|+++-+|++|.++.||.|+++.. -++.|+.+.+.+.+.
T Consensus 306 NVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~ 385 (407)
T KOG1460|consen 306 NVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVI 385 (407)
T ss_pred CceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeE
Confidence 9999999999999999999999999999999999999999999999999841 278899999999999
Q ss_pred EcCCeEecCccccccccCCcccC
Q 022113 280 SNGGVVLPHKEIKSSILKPEIVM 302 (302)
Q Consensus 280 v~~~~v~~~~~~~~~~~~~~~~~ 302 (302)
+.+..++|.+++.++ ++++|+|
T Consensus 386 v~~s~vlp~k~l~vs-~~~eIil 407 (407)
T KOG1460|consen 386 VLNSIVLPNKELNVS-VQDEIIL 407 (407)
T ss_pred EeeeeEecCCcccee-eecceeC
Confidence 999889999999999 8999987
No 4
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.2e-38 Score=287.69 Aligned_cols=276 Identities=24% Similarity=0.341 Sum_probs=196.5
Q ss_pred hhHHHHHhhcCCc-------EEE--EEecCC---CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHc
Q 022113 2 LNFLKEFEAKLGI-------KII--CSQETE---PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH 69 (302)
Q Consensus 2 ~~~~~~~~~~~g~-------~i~--~~~~~~---~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~ 69 (302)
++|+++ +++|++ .+. |..|.+ ++|||+||++|++++....+++|+|++||++++.|+.++++.|.++
T Consensus 65 ~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~ 143 (380)
T PRK05293 65 NNHIGI-GSPWDLDRINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEK 143 (380)
T ss_pred HHHHhC-CCcccccCCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhc
Confidence 345544 455663 333 555544 5999999999999995322368999999999999999999999988
Q ss_pred CCcEEEEEEeC--CCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhh-ccC------CCCCccccch
Q 022113 70 GGEASIMVTKV--DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDR-IEL------RPTSIEKEVF 140 (302)
Q Consensus 70 ~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~-l~~------~~~~~~~~~~ 140 (302)
++++++++... +++..||.+.+|+ +++|++|.|||..+..++.++|+|+|++++|.. ++. ...++..+++
T Consensus 144 ~~~~tl~~~~~~~~~~~~yG~v~~d~-~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i 222 (380)
T PRK05293 144 EADVTIAVIEVPWEEASRFGIMNTDE-NMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVI 222 (380)
T ss_pred CCCEEEEEEEcchhhccccCEEEECC-CCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHH
Confidence 88888887655 4678899999985 689999999997666789999999999998843 332 1123345677
Q ss_pred HHHHhc-CcEEEEEecCeeEecCChHHHHHHHHHHHHhhccc----------cccccccCceEecceEEcCCcEECCCCE
Q 022113 141 PKIALE-GKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKK----------SSLKLATGANIVGNVLVHESAQIGEGCL 209 (302)
Q Consensus 141 ~~l~~~-~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~ 209 (302)
+.++++ .++.++..+++|.|+|++++|++++..++...... ..+.+.+.+.|++.+.| .++.||++|.
T Consensus 223 ~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~ 301 (380)
T PRK05293 223 PLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKV-KNSLVVEGCV 301 (380)
T ss_pred HHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEE-ecCEECCCCE
Confidence 777765 57999999999999999999999987665432110 01112223333333333 2345555665
Q ss_pred ECC---CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccC----cEECCCcEECCceEE
Q 022113 210 IGP---DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYS 280 (302)
Q Consensus 210 i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~----~~i~~~~~v~~~~~v 280 (302)
|++ +|+||++|.|+++|.|.+|+|+++|.|+++|+|.+|++++++.|++++++.++ ++||++++|.+++++
T Consensus 302 I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 302 VYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred EcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCCCceeEEEeCCCCCCCCcEe
Confidence 542 46777777777777777777777777777777777777777777777777553 556666666666554
No 5
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-38 Score=274.46 Aligned_cols=253 Identities=25% Similarity=0.418 Sum_probs=176.0
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEE
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKF 101 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~ 101 (302)
-.|||+|+++.+.++.+...+.+++++||+++++|+++|+++|.+.++++|+.+.+++ +++.||++.+|+ ++++++|
T Consensus 100 y~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~-~~~i~~F 178 (393)
T COG0448 100 YEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDE-NGRIIEF 178 (393)
T ss_pred eeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECC-CCCEEee
Confidence 4689999999999987655688999999999999999999999999999999999986 567899999997 8999999
Q ss_pred EecCCC-CCCC-eEEEEEEEeCHhhHhh-cc------CCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113 102 VEKPKL-FVGN-KINAGIYLLNPAVLDR-IE------LRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLR 172 (302)
Q Consensus 102 ~ekp~~-~~~~-~~~~Giy~~~~~~l~~-l~------~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~ 172 (302)
.|||.. +..+ +.++|+|+|++++|.. |+ .+..++..++++.+.+++++++|.++|||.|+||.++|++|+.
T Consensus 179 ~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNm 258 (393)
T COG0448 179 VEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANM 258 (393)
T ss_pred eeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhH
Confidence 999988 4443 8999999999998854 43 2234677888999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC
Q 022113 173 LYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW 252 (302)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~ 252 (302)
.+++.... -.-+.+++.|......-|.+.+..++.+ .++.|+.+|+|.. .|.+|+++.+++|+++|+|.+|+|..
T Consensus 259 dLl~~~~~--~~lyd~~w~IyT~~~~~pPak~~~~s~v-~nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~ 333 (393)
T COG0448 259 DLLSPQPE--LNLYDRNWPIYTKNKNLPPAKFVNDSEV-SNSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMP 333 (393)
T ss_pred HhcCCCCc--ccccCCCCceeecCCCCCCceEecCceE-eeeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeC
Confidence 88762111 1123344444433333333333333333 2444444444433 44444444444444444444444444
Q ss_pred CCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 253 HSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
+|.||.+|+| ..++|.++|+|++|++++..
T Consensus 334 ~~~IG~~~~l-~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 334 DVEIGEGAVL-RRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred CcEECCCCEE-EEEEeCCCcEeCCCcEEcCC
Confidence 4444444444 33444444444444444433
No 6
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=6e-37 Score=276.56 Aligned_cols=277 Identities=26% Similarity=0.428 Sum_probs=217.5
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
+++++ +..|++++.|+.|++++||++++++|++++.+ ++|++++||++++.++.++++.|+++++++++++.+.++
T Consensus 62 ~~~~~-~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~---~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 62 EIVGE-GERFGAKITYIVQGEPLGLAHAVYTARDFLGD---DDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred HHHhc-ccccCceEEEEECCCCCCHHHHHHHHHHhcCC---CCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 34444 35688999999998899999999999999854 689999999999999999999999989999999988888
Q ss_pred CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcC-cEEEEEecC
Q 022113 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEG-KLFAMVLPG 156 (302)
Q Consensus 83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~-~v~~~~~~g 156 (302)
+..||++.+++ ++++..|.|||..+.+.+.++|+|+|++.+++.++.... ....++++.+++++ ++.+|.+++
T Consensus 138 ~~~~g~~~~~~-~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~g 216 (353)
T TIGR01208 138 PTAFGVAVLED-GKRILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVTG 216 (353)
T ss_pred hhhCeEEEEcC-CCcEEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeCc
Confidence 88899988864 578999999998777789999999999988887743211 11245677777664 799999999
Q ss_pred eeEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEcc
Q 022113 157 FWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMR 235 (302)
Q Consensus 157 ~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~ 235 (302)
+|.|+++|++|++++..+++....... .+.+++.+.+++++++++.| .++.|.++++||++|.|+. +.|. +|+|++
T Consensus 217 ~w~digt~~dl~~a~~~ll~~~~~~~~-~i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~-~~i~~~~~Ig~ 293 (353)
T TIGR01208 217 WWKDTGKPEDLLDANRLILDEVEREVQ-GVDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIEN-SYIGPYTSIGE 293 (353)
T ss_pred EEEeCCCHHHHHHHHHHHHhhcccccC-CcCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcC-cEECCCCEECC
Confidence 999999999999999988875433221 14556777778888888888 6777777777777777764 3443 677777
Q ss_pred CCEECCCcEEeccEECCCCEECCCc-EEccCcEECCCcEECCceEEcCC--eEecCc
Q 022113 236 GVRIKKHACISSSIIGWHSTVGQWA-RVENMTILGEDVHVCDEIYSNGG--VVLPHK 289 (302)
Q Consensus 236 ~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~~i~~~~~v~~~~~v~~~--~v~~~~ 289 (302)
+|.|+ ++.|.+|+|++++.|+.++ .+ .+++|+++++|++++.+... .+++.+
T Consensus 294 ~~~i~-~~~i~~s~i~~~~~i~~~~~~~-~~~ii~~~~~i~~~~~~~~~~~~~~g~~ 348 (353)
T TIGR01208 294 GVVIR-DAEVEHSIVLDESVIEGVQARI-VDSVIGKKVRIKGNRRRPGDLRLTIGDY 348 (353)
T ss_pred CCEEe-eeEEEeeEEcCCCEEcCCccee-ecCEEcCCCEECCCcccccccceEEcCC
Confidence 77776 5777788888888888774 66 56888888888888777642 345543
No 7
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.8e-36 Score=260.76 Aligned_cols=264 Identities=24% Similarity=0.356 Sum_probs=218.6
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
++.|+.|.+|+|||||+.+|++++.++-++++||++||+ |.. ..|+++++.|.+..+.++++.+..++|..||.+..+
T Consensus 68 ~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~ 147 (460)
T COG1207 68 DVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRD 147 (460)
T ss_pred CceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEc
Confidence 599999999999999999999999544346899999999 554 558999999999999999999999999999999998
Q ss_pred CCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhH-hhccC-CCCCccccchHH----HHh--cCcEEEEEecCe--e
Q 022113 93 ESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVL-DRIEL-RPTSIEKEVFPK----IAL--EGKLFAMVLPGF--W 158 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l-~~l~~-~~~~~~~~~~~~----l~~--~~~v~~~~~~g~--~ 158 (302)
+ +++|..+.|.-+. ..-..+|+|+|+|+...| +.|+. +....+.|+|.. ++. ..++.++..+.+ .
T Consensus 148 ~-~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~d~~E~ 226 (460)
T COG1207 148 G-NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVDDEEEV 226 (460)
T ss_pred C-CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecCchHHh
Confidence 6 7899999986432 245789999999997744 55542 344556777653 222 257788877754 5
Q ss_pred EecCChHHHHHHHHHHHHhhcc-----ccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113 159 MDIGQPRDYITGLRLYLDSLRK-----KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV 233 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~-----~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i 233 (302)
..+++...+.++++.++.+..+ ...-.-+...+|++++.+++++.|.+++.|.+++.||++|+||++|+|.+|.|
T Consensus 227 ~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I 306 (460)
T COG1207 227 LGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVI 306 (460)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEE
Confidence 7999999999999888765443 22222344567888999999999999999999999999999999999999999
Q ss_pred ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceE
Q 022113 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIY 279 (302)
Q Consensus 234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~ 279 (302)
++++.|.+++++++|.+++++.||++++++|++.++++++||..+.
T Consensus 307 ~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVE 352 (460)
T COG1207 307 GDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVE 352 (460)
T ss_pred cCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEE
Confidence 9999999999999999999999999999999999999999988544
No 8
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=8.5e-36 Score=275.37 Aligned_cols=256 Identities=21% Similarity=0.342 Sum_probs=199.8
Q ss_pred CCCCChHHHHHcHhhhccCC---CCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCc
Q 022113 23 EPLGTAGPLALARDKLIDDT---GEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGK 97 (302)
Q Consensus 23 ~~~Gt~~al~~a~~~i~~~~---~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~ 97 (302)
.++|||+|+++++.++.+.. +++|++++||++++.|+.+++++|+++++++|+++.+.+ ++..||++.+|+ +++
T Consensus 99 ~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~-~~~ 177 (436)
T PLN02241 99 WFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDD-TGR 177 (436)
T ss_pred cccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECC-CCC
Confidence 47999999999998775321 378999999999999999999999999999999988775 467899999975 789
Q ss_pred EEEEEecCCCCC---------------------CCeEEEEEEEeCHhhHhhc-cC---CCCCccccchHHHHhc-CcEEE
Q 022113 98 VEKFVEKPKLFV---------------------GNKINAGIYLLNPAVLDRI-EL---RPTSIEKEVFPKIALE-GKLFA 151 (302)
Q Consensus 98 v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~~~~l~~~-~~v~~ 151 (302)
+++|.|||..+. .+++++|+|+|++++|..+ +. ...++..++++.++++ .++++
T Consensus 178 v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~~l~~~g~~v~~ 257 (436)
T PLN02241 178 IIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIPGAIKEGYNVQA 257 (436)
T ss_pred EEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHHHHhhcCCeEEE
Confidence 999999996532 3689999999999999544 31 1224556778888877 58999
Q ss_pred EEecCeeEecCChHHHHHHHHHHHHhhcc------c----------cccccccCceEecceEEcCCcEECCCCEECCCcE
Q 022113 152 MVLPGFWMDIGQPRDYITGLRLYLDSLRK------K----------SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVA 215 (302)
Q Consensus 152 ~~~~g~~~digt~~~~~~a~~~~l~~~~~------~----------~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ 215 (302)
|.++|||.|+++|++|++++..+++.... . .++.+ .++.+.+ ++|+++|.|+ +|.|. +++
T Consensus 258 ~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~-~sv 333 (436)
T PLN02241 258 YLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKI-EDCRITD-SIISHGCFLR-ECKIE-HSV 333 (436)
T ss_pred EeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEe-cCCeEEE-eEEcCCcEEc-CeEEE-eeE
Confidence 99999999999999999999988753210 0 01111 3444544 7899999999 99995 789
Q ss_pred ECCCCEECCCcEEeceEEccC-------------------CEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 216 VGPGCVVESGVRLSRCTVMRG-------------------VRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 216 ig~~~~i~~~~~i~~~~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
|+++|.|+++|.|.+|+++.. +.|+++|.+++++|+++++||+++.|....-+.+..++|+
T Consensus 334 I~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~ 413 (436)
T PLN02241 334 VGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDGVQEADREEE 413 (436)
T ss_pred EcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCcEEecccccCCcccccc
Confidence 999999999999999988762 3899999999999999999999999974433333333333
Q ss_pred ceEEcCC
Q 022113 277 EIYSNGG 283 (302)
Q Consensus 277 ~~~v~~~ 283 (302)
+++++++
T Consensus 414 ~~~~~~~ 420 (436)
T PLN02241 414 GYYIRSG 420 (436)
T ss_pred ccEEeCC
Confidence 3333333
No 9
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.8e-35 Score=272.59 Aligned_cols=259 Identities=22% Similarity=0.366 Sum_probs=199.7
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEEE
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKFV 102 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~~ 102 (302)
+|||+|++++++++.....++|+|++||+++++|+.++++.|+++++++|+++.+.+ ++..||++.+|+ ++++..|.
T Consensus 98 lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~-~g~V~~~~ 176 (429)
T PRK02862 98 QGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDD-DGRITEFS 176 (429)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECC-CCcEEEEE
Confidence 899999999999986432368999999999999999999999998889999887653 577899999986 78999999
Q ss_pred ecCCCC---------------------CCCeEEEEEEEeCHhhHhhc-cCC--CCCccccchHHHHhcCcEEEEEecCee
Q 022113 103 EKPKLF---------------------VGNKINAGIYLLNPAVLDRI-ELR--PTSIEKEVFPKIALEGKLFAMVLPGFW 158 (302)
Q Consensus 103 ekp~~~---------------------~~~~~~~Giy~~~~~~l~~l-~~~--~~~~~~~~~~~l~~~~~v~~~~~~g~~ 158 (302)
|||... ...++++|+|+|++++|..+ +.. ..++..++++.+++++++.+|.++++|
T Consensus 177 Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~~~~~v~~~~~~g~w 256 (429)
T PRK02862 177 EKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAIRDYKVQSYLFDGYW 256 (429)
T ss_pred ECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHhccCcEEEEEeCCEE
Confidence 999632 13589999999999999644 332 234556888888888999999999999
Q ss_pred EecCChHHHHHHHHHHHHhhcc-----------------ccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCE
Q 022113 159 MDIGQPRDYITGLRLYLDSLRK-----------------KSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV 221 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~-----------------~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~ 221 (302)
.|+|+|++|+++++.++..... ..++.+ .++.+. +++|+++|.| ++|.|. +|+|+++|.
T Consensus 257 ~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~ 332 (429)
T PRK02862 257 EDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSR 332 (429)
T ss_pred EeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcE
Confidence 9999999999999887622111 011122 133443 4688888888 788885 789999999
Q ss_pred ECCCcEEeceEEcc-------------------CCEECCCcEEeccEECCCCEECCCcEEccCcEECC------CcEECC
Q 022113 222 VESGVRLSRCTVMR-------------------GVRIKKHACISSSIIGWHSTVGQWARVENMTILGE------DVHVCD 276 (302)
Q Consensus 222 i~~~~~i~~~~i~~-------------------~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~------~~~v~~ 276 (302)
||++|.|.+|+|++ ++.||++|.|.+|+++++|.||+++++.+...+.+ +++++.
T Consensus 333 Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (429)
T PRK02862 333 IESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRD 412 (429)
T ss_pred ECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCcEEecCCCcccccccccceEeeC
Confidence 99999999999876 68899999999999999999999998864443333 444444
Q ss_pred c-eEEcCCeEecC
Q 022113 277 E-IYSNGGVVLPH 288 (302)
Q Consensus 277 ~-~~v~~~~v~~~ 288 (302)
| ++|..++++++
T Consensus 413 ~~~~~~~~~~~~~ 425 (429)
T PRK02862 413 GIVVVVKNAVIPD 425 (429)
T ss_pred CEEEEcCCcCCCC
Confidence 4 33444444443
No 10
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.7e-35 Score=271.32 Aligned_cols=236 Identities=22% Similarity=0.419 Sum_probs=161.0
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--CCCCCcceEEEeCCCCcEEEE
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKVEKF 101 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v~~~ 101 (302)
++|||+||++|++++.++..++|+|++||++++.|+.+++++|+++++++|+++.+. +++..||++.+|+ +++++.|
T Consensus 98 ~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~-~g~v~~~ 176 (407)
T PRK00844 98 YLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDP-DGRIRGF 176 (407)
T ss_pred ccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHcccCCEEEECC-CCCEEEE
Confidence 699999999999999642224599999999999999999999999888888888654 4678899999986 6899999
Q ss_pred EecCCCCC-------CCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEe------------c
Q 022113 102 VEKPKLFV-------GNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVL------------P 155 (302)
Q Consensus 102 ~ekp~~~~-------~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~------------~ 155 (302)
.|||..+. ..++++|+|+|++++| +.|+. ...++..++++.+++++++.+|.+ +
T Consensus 177 ~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~ 256 (407)
T PRK00844 177 LEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDR 256 (407)
T ss_pred EECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcccccccccccCCC
Confidence 99996432 4689999999999986 55542 234566788999998889999866 5
Q ss_pred CeeEecCChHHHHHHHHHHHHhhccc----------------cccccccCc---eEecceEEcCCcEECCCCEECCCcEE
Q 022113 156 GFWMDIGQPRDYITGLRLYLDSLRKK----------------SSLKLATGA---NIVGNVLVHESAQIGEGCLIGPDVAV 216 (302)
Q Consensus 156 g~~~digt~~~~~~a~~~~l~~~~~~----------------~~~~~~~~~---~i~~~~~i~~~~~i~~~~~i~~~~~i 216 (302)
|||.|+|+|++|+++++.+++..... .++.+..+. .+.++++++++|.|+ ++.|. +|+|
T Consensus 257 g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svI 334 (407)
T PRK00844 257 GYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVL 334 (407)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEE
Confidence 99999999999999999887532110 000010000 012234444444444 44443 3444
Q ss_pred CCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 217 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 217 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
|++|.|+++|.|.+|+|+++|.|+++|+|.+|++++++.|++++++
T Consensus 335 g~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i 380 (407)
T PRK00844 335 SPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATI 380 (407)
T ss_pred CCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEE
Confidence 4444444444444444444444444444444444444444444444
No 11
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.8e-35 Score=270.04 Aligned_cols=255 Identities=22% Similarity=0.343 Sum_probs=167.7
Q ss_pred cCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--CCCCCcceEEEeCCCCcE
Q 022113 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV--DEPSKYGVVVMEESTGKV 98 (302)
Q Consensus 21 ~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~v~~d~~~~~v 98 (302)
|+.++|||+|+++|++++....+++|+|++||++++.|+.++++.|+++++++|+++.+. +++..||++.+|+ ++++
T Consensus 107 e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~-~~~V 185 (425)
T PRK00725 107 ENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDE-NDRI 185 (425)
T ss_pred CccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECC-CCCE
Confidence 344799999999999999643336899999999999999999999999999999888765 5678999999986 6899
Q ss_pred EEEEecCCCC-------CCCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEec---------
Q 022113 99 EKFVEKPKLF-------VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVLP--------- 155 (302)
Q Consensus 99 ~~~~ekp~~~-------~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~--------- 155 (302)
+.|.|||..+ ...++++|+|+|++++| +.|+. ...++..++++.+++++++.+|.++
T Consensus 186 ~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~ 265 (425)
T PRK00725 186 TAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPE 265 (425)
T ss_pred EEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccCcEEEEEecCCccccccc
Confidence 9999999643 24689999999999986 44532 1234556788889988999999885
Q ss_pred --CeeEecCChHHHHHHHHHHHHhhccc-c---ccccccCceEec-ceEEcCCcEECCC--CEECCCcEECCCCEECCCc
Q 022113 156 --GFWMDIGQPRDYITGLRLYLDSLRKK-S---SLKLATGANIVG-NVLVHESAQIGEG--CLIGPDVAVGPGCVVESGV 226 (302)
Q Consensus 156 --g~~~digt~~~~~~a~~~~l~~~~~~-~---~~~~~~~~~i~~-~~~i~~~~~i~~~--~~i~~~~~ig~~~~i~~~~ 226 (302)
+||.|+|+|++|+++++.+++..... . ...+.......+ ..++. ++.+ +.+ .+++||++|.| +++
T Consensus 266 ~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~----~~~~~~~~~-~~s~i~~~~~i-~~~ 339 (425)
T PRK00725 266 EEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVF----DRSGRRGMA-INSLVSGGCII-SGA 339 (425)
T ss_pred cCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEec----cCCCCcceE-EeCEEcCCcEE-cCc
Confidence 69999999999999998876421100 0 000000000001 00000 0111 111 24455555555 345
Q ss_pred EEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 227 RLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 227 ~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
.|.+|+|+++|.|+++|.|.+|+|+++|.|+++++| .+|+|+++++|+++++++.+
T Consensus 340 ~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i-~~~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 340 VVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRL-RRCVIDRGCVIPEGMVIGED 395 (425)
T ss_pred cccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEE-eeEEECCCCEECCCCEECCC
Confidence 555555555555555555555555555555555555 33555555555555444433
No 12
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=6.9e-34 Score=257.50 Aligned_cols=252 Identities=22% Similarity=0.373 Sum_probs=198.7
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC--CCCCcceEEEeCCCCcEEEE
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD--EPSKYGVVVMEESTGKVEKF 101 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~ 101 (302)
++||+++++++++++....+++|++++||++++.++.++++.|+++++++++++.+.+ ++..||++.+|+ ++++..|
T Consensus 92 ~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~-~~~v~~~ 170 (361)
T TIGR02091 92 YQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDE-DGRIVDF 170 (361)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECC-CCCEEEE
Confidence 5899999999999985432368999999999999999999999888888888887653 567899999985 6899999
Q ss_pred EecCCCCCCC-------eEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcCcEEEEEecCeeEecCChHHH
Q 022113 102 VEKPKLFVGN-------KINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 167 (302)
Q Consensus 102 ~ekp~~~~~~-------~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~ 167 (302)
.|||..+... ++++|+|+|++++| +.++. ...++..++++.+++++++.+|.++++|.|++++++|
T Consensus 171 ~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~ 250 (361)
T TIGR02091 171 EEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSF 250 (361)
T ss_pred EECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHH
Confidence 9998655444 89999999999987 44442 1223445788889988999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccccCceEec-ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe
Q 022113 168 ITGLRLYLDSLRKKSSLKLATGANIVG-NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS 246 (302)
Q Consensus 168 ~~a~~~~l~~~~~~~~~~~~~~~~i~~-~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 246 (302)
++++..++....... .+.....+.+ ...+.+.+.|++++.+ ++++||++|.|+++ .+.+|+|+++|.|+++|+|.
T Consensus 251 ~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i-~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~ 326 (361)
T TIGR02091 251 WEANMDLVSVVPPFD--LYDRKWPIYTYNEFLPPAKFVDSDAQV-VDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVE 326 (361)
T ss_pred HHHHHHHhCCCchhh--ccccCCceecCCCCCCCceEecCCCEE-ECCEECCCCEECCC-EEEccEECCCCEECCCCEEe
Confidence 999988775332110 1111122211 2234455555666655 57788888888876 78899999999999999999
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 281 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~ 281 (302)
+|++++++.|+.++++ .+++||++++|++++.++
T Consensus 327 ~sii~~~~~v~~~~~l-~~~ivg~~~~i~~~~~i~ 360 (361)
T TIGR02091 327 DSVIMGDVGIGRGAVI-RNAIIDKNVRIGEGVVIG 360 (361)
T ss_pred eeEEeCCCEECCCCEE-eeeEECCCCEECCCCEeC
Confidence 9999999999999999 678999999999888775
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.1e-34 Score=264.26 Aligned_cols=262 Identities=22% Similarity=0.375 Sum_probs=214.5
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.+.|..|++++||+++++++++++.+. .++|++++||+ +.+.+++++++.|.+.+.+++++..+.+++..||.+.+|
T Consensus 69 ~i~~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~~~~~~g~v~~d 147 (459)
T PRK14355 69 DVSFALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLENPFGYGRIVRD 147 (459)
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCcCCEEEEc
Confidence 677888888999999999999998532 36899999998 456779999999988888888888888788889999888
Q ss_pred CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccC------CCCCccccchHHHHhcC-cEEEEEecCe--e
Q 022113 93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIEL------RPTSIEKEVFPKIALEG-KLFAMVLPGF--W 158 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~------~~~~~~~~~~~~l~~~~-~v~~~~~~g~--~ 158 (302)
+ ++++..+.|||... ...++++|+|+|++++| +.++. .......++++.+++++ ++.+|.++++ |
T Consensus 148 ~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~~~g~~v~~~~~~~~~~~ 226 (459)
T PRK14355 148 A-DGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAAAEGLRCLAFPVADPDEI 226 (459)
T ss_pred C-CCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHHHCCCeEEEEEcCCHHHh
Confidence 5 78999999986321 24688999999999864 44531 11112246778888775 6999999887 8
Q ss_pred EecCChHHHHHHHHHHHHhhccc----cccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113 159 MDIGQPRDYITGLRLYLDSLRKK----SSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV 233 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~~----~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i 233 (302)
+|+++|++|+++++.++...... ....+++++ .|++++.|++++.|+++|.|+++++||++|.|+++|.|.+|+|
T Consensus 227 ~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~I 306 (459)
T PRK14355 227 MGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIKGCRI 306 (459)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEeCCEE
Confidence 99999999999987665543221 123455654 6888999999999999999999999999999999999999999
Q ss_pred ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI 278 (302)
Q Consensus 234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~ 278 (302)
+++|.|++++++.++++++++.|++++++.+++.|+++++|+.++
T Consensus 307 g~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 351 (459)
T PRK14355 307 GDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFV 351 (459)
T ss_pred cCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCc
Confidence 999999999999999999999999999998888888888877654
No 14
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=3.4e-34 Score=260.15 Aligned_cols=274 Identities=20% Similarity=0.301 Sum_probs=198.5
Q ss_pred hhHHHHHhhcCCcEE------EEEec-CCCC--CChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCc
Q 022113 2 LNFLKEFEAKLGIKI------ICSQE-TEPL--GTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE 72 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i------~~~~~-~~~~--Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~ 72 (302)
++|+++ +..|++++ .+..| ++++ |+++++++|++++....+++|+|++||++++.|+.+++++|++++++
T Consensus 65 ~~~l~~-~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~ 143 (369)
T TIGR02092 65 FDHLGS-GREWDLHRKRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKD 143 (369)
T ss_pred HHHHhC-CCCCCcccccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCC
Confidence 345554 44677664 23344 4454 45556889999885222368999999999999999999999999999
Q ss_pred EEEEEEeCC--CCCCcc-eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHh-hcc----CCCCCccccchHHHH
Q 022113 73 ASIMVTKVD--EPSKYG-VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLD-RIE----LRPTSIEKEVFPKIA 144 (302)
Q Consensus 73 ~~l~~~~~~--~~~~~g-~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~----~~~~~~~~~~~~~l~ 144 (302)
+|+++.+.+ ++..|| .+.+++ ++++..+.+++.......+++|+|+|++++|. .++ ........++++.++
T Consensus 144 ~tl~~~~v~~~~~~~~g~vv~~~~-~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~ 222 (369)
T TIGR02092 144 ITVVYKKVKPADASEYDTILRFDE-SGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENL 222 (369)
T ss_pred EEEEEEecCHHHccccCcEEEEcC-CCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHh
Confidence 999988765 567785 455664 57888775543322345789999999998763 332 222223346677777
Q ss_pred hcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhcccccccc-ccCceEecceEEcCCcEECCCCEECCCcEECCCCEEC
Q 022113 145 LEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRKKSSLKL-ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVE 223 (302)
Q Consensus 145 ~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~~~~~~~-~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~ 223 (302)
++.+++++..+++|.|+|+|++|++++..+++...... .+ .....+.....+.+.+.|+++|.| ++|+||++|.|+
T Consensus 223 ~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~ 299 (369)
T TIGR02092 223 KELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQS--LFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE 299 (369)
T ss_pred ccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchhh--hcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe
Confidence 77889999999999999999999999987765432110 01 111111111112355666677777 678888999997
Q ss_pred CCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 224 SGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 224 ~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
+.|.+|+|+++|.|+++|.|.+|++++++.|++++++ .+++|+++++|++++.+.+.
T Consensus 300 --~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i-~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 300 --GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHL-ENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred --eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEE-EEEEECCCCEECCCCEeCCC
Confidence 3688999999999999999999999999999999999 56899999988888887554
No 15
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.8e-32 Score=254.63 Aligned_cols=262 Identities=21% Similarity=0.251 Sum_probs=199.9
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
..+.++.|++++||+++++++++++....+++|++++||+ ++ +.++.++++.|++.+.+++++..+..++..||.+..
T Consensus 70 ~~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~ 149 (482)
T PRK14352 70 PEVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILR 149 (482)
T ss_pred CccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEE
Confidence 3467788888999999999999988542336799999998 44 567999999998888778888888888889999888
Q ss_pred eCCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhHhhc-c---CC---CCCccccchHHHHhcC-cEEEEEecCeeE
Q 022113 92 EESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVLDRI-E---LR---PTSIEKEVFPKIALEG-KLFAMVLPGFWM 159 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~~l-~---~~---~~~~~~~~~~~l~~~~-~v~~~~~~g~~~ 159 (302)
++ ++++.+|.|||.... ..++++|+|+|++++|..+ + .. ......++++.+++++ ++.+|.++++|.
T Consensus 150 ~~-~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~~g~w~ 228 (482)
T PRK14352 150 DQ-DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHADDSAE 228 (482)
T ss_pred CC-CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcce
Confidence 75 789999999987542 3578999999999988543 2 11 1122356777888775 799999999999
Q ss_pred ecCChHHH------HHHHHHHHHhhcccccccccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceE
Q 022113 160 DIGQPRDY------ITGLRLYLDSLRKKSSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCT 232 (302)
Q Consensus 160 digt~~~~------~~a~~~~l~~~~~~~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~ 232 (302)
|+++++.+ ..+++.+++.........+++ .+.|.++++|++++.|++++.|.++++||++|.|+++|.|.+++
T Consensus 229 ~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~ 308 (482)
T PRK14352 229 VAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVT 308 (482)
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCE
Confidence 99998887 223333333332222223333 56788889999999999999998899999999999999998888
Q ss_pred EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCc
Q 022113 233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDE 277 (302)
Q Consensus 233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~ 277 (302)
|+++|.|++ +.+.+++|++++.||+++.+.++++||++++++.+
T Consensus 309 Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~ 352 (482)
T PRK14352 309 VGEGASVVR-THGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAF 352 (482)
T ss_pred ECCCCEEee-eeeecCEEcCCCEECCCeEecCCcEEcCCCEECCc
Confidence 888888864 67777888888888777777767777776666643
No 16
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.9e-31 Score=245.97 Aligned_cols=263 Identities=19% Similarity=0.265 Sum_probs=203.9
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
.+++|+.|+.++||+++++.+++++.....+++++++||+ ++ +.+++++++.|+ +++++++..+.+++..||.+..
T Consensus 69 ~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~~~~~~~g~v~~ 146 (456)
T PRK14356 69 EDARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTLPDPGAYGRVVR 146 (456)
T ss_pred cCceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEcCCCCCceEEEE
Confidence 3567888888999999999999998542237899999999 44 556889998875 5568888888888889998876
Q ss_pred eCCCCcEEEEEecCCC------CCCCeEEEEEEEeCHhhHhhc-cCC------CCCccccchHHHHhc-CcEEEEEecC-
Q 022113 92 EESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRI-ELR------PTSIEKEVFPKIALE-GKLFAMVLPG- 156 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l-~~~------~~~~~~~~~~~l~~~-~~v~~~~~~g- 156 (302)
+ ++++..|.|||.. +...++++|+|.|++++|..+ +.- ......++++.+.+. .++.++...+
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~~~g~~v~~~~~~~~ 224 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAVAEGMNVLGVNCGED 224 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHHHCCCeEEEEEcCCc
Confidence 4 6899999998753 235688999999999987544 211 111123455566554 4688888766
Q ss_pred -eeEecCChHHHHHHHHHHHHhhcccc---cccc--ccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec
Q 022113 157 -FWMDIGQPRDYITGLRLYLDSLRKKS---SLKL--ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR 230 (302)
Q Consensus 157 -~~~digt~~~~~~a~~~~l~~~~~~~---~~~~--~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~ 230 (302)
+|+++++|++|.+++..+........ ...+ .+++.+++++.+++++.|..+|.|+++++||++|.|+++|.|.+
T Consensus 225 ~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~ 304 (456)
T PRK14356 225 PNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRD 304 (456)
T ss_pred CeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEe
Confidence 57999999999998877765433211 1111 23466677777888888888888888899999999999999999
Q ss_pred eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 231 CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
|+|+++|.|+++|.|.+++|++++.||++++|.++++|+++++|++++.+
T Consensus 305 ~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i 354 (456)
T PRK14356 305 AVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEM 354 (456)
T ss_pred eEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCcee
Confidence 99999999999999999999999999999999888999998888887544
No 17
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.2e-31 Score=246.26 Aligned_cols=266 Identities=20% Similarity=0.309 Sum_probs=204.8
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV 90 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~ 90 (302)
+..+.|+.|+.++||+++++++++++... +++|++++||+ +.+.+++++++.|.++++++++++.+.+++..||.+.
T Consensus 70 ~~~i~~v~~~~~~Gt~~al~~~~~~l~~~-~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~~~~~yG~v~ 148 (481)
T PRK14358 70 GSGVAFARQEQQLGTGDAFLSGASALTEG-DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELPDATGYGRIV 148 (481)
T ss_pred cCCcEEecCCCcCCcHHHHHHHHHHhhCC-CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCceEEE
Confidence 34578888888999999999999988532 25799999998 4567799999999988888998888888888899999
Q ss_pred EeCCCCcEEEEEecCCCCC----CCeEEEEEEEeC---HhhHhhccCCC---CCccccchHHHHhcC-cEEEEEecCeeE
Q 022113 91 MEESTGKVEKFVEKPKLFV----GNKINAGIYLLN---PAVLDRIELRP---TSIEKEVFPKIALEG-KLFAMVLPGFWM 159 (302)
Q Consensus 91 ~d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~---~~~l~~l~~~~---~~~~~~~~~~l~~~~-~v~~~~~~g~~~ 159 (302)
+|+ ++++.+|.|||.... .+++++|+|+|+ +++++.++... .....++++.+++++ ++.+|.++++|.
T Consensus 149 ~d~-~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~~~~~~g~~i~~~~~~~~~~ 227 (481)
T PRK14358 149 RGA-DGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLGLYRAGGAQVRAFKLSDPDE 227 (481)
T ss_pred ECC-CCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHHHHHHCCCeEEEEecCCHHH
Confidence 986 689999999986432 357899999999 45566664321 122246777777775 689999988876
Q ss_pred ecCChHHHHHH--HHHHHHhhcc----ccccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceE
Q 022113 160 DIGQPRDYITG--LRLYLDSLRK----KSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCT 232 (302)
Q Consensus 160 digt~~~~~~a--~~~~l~~~~~----~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~ 232 (302)
.++.-..++.+ .+.+...... .....+.+.+ .+.+++.||+++.|+++|.|.++++||++|.|+++|.|.+|+
T Consensus 228 ~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~~sv 307 (481)
T PRK14358 228 VLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVTDSV 307 (481)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEeeeE
Confidence 66554444222 2222222211 1111233333 357888899999999999999999999999999999999999
Q ss_pred EccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 233 VMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 233 i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
|+++|.|+++++|.++++++++.|++++.+.++++||+++++++++.+
T Consensus 308 I~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i 355 (481)
T PRK14358 308 LHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVET 355 (481)
T ss_pred ECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEE
Confidence 999999999999999999999999999999888888888888886553
No 18
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=2.4e-30 Score=241.19 Aligned_cols=260 Identities=22% Similarity=0.339 Sum_probs=201.2
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
++.++.+++++||+++++++++++.. +++|++++||+ + .+.++.++++.|.+. ..++++.+.+++..||.+.++
T Consensus 65 ~i~~~~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~g~v~~d 140 (451)
T TIGR01173 65 DVNWVLQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKLPDPTGYGRIIRE 140 (451)
T ss_pred CcEEEEcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEecCCCCCCCEEEEc
Confidence 46677788889999999999999854 26899999998 4 456699999988664 367777777777789998887
Q ss_pred CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccCCC------CCccccchHHHHhcC-cEEEEEecCe--e
Q 022113 93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIELRP------TSIEKEVFPKIALEG-KLFAMVLPGF--W 158 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~~------~~~~~~~~~~l~~~~-~v~~~~~~g~--~ 158 (302)
+ ++++..|.|||... ...++++|+|+|++++| +.++... .....++++.+++++ ++.+|.++++ |
T Consensus 141 ~-~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g~~v~~~~~~~~~~~ 219 (451)
T TIGR01173 141 N-DGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADGETVRAVQVDDSDEV 219 (451)
T ss_pred C-CCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCCCeEEEEEcCChhhe
Confidence 5 68999999997543 13478999999999985 4443211 111245677777765 6889989887 8
Q ss_pred EecCChHHHHHHHHHHHHhhccc---cccc--cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113 159 MDIGQPRDYITGLRLYLDSLRKK---SSLK--LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV 233 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~~---~~~~--~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i 233 (302)
.++++|+++..++..+....... .... ....+.+.+++.+++++.|+++|.|+++++||++|.|++++.|.++.|
T Consensus 220 ~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i 299 (451)
T TIGR01173 220 LGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVI 299 (451)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEe
Confidence 99999999988776554322211 1111 133456778888999999999999988999999999999999999999
Q ss_pred ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceE
Q 022113 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIY 279 (302)
Q Consensus 234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~ 279 (302)
+++|.|++++.+.+++|++++.|+++++|.++++|+++++|++++.
T Consensus 300 ~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~ 345 (451)
T TIGR01173 300 GSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVE 345 (451)
T ss_pred cCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEcccee
Confidence 9999999999999999999999999888887888888887777654
No 19
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=5.2e-31 Score=218.60 Aligned_cols=171 Identities=29% Similarity=0.505 Sum_probs=151.7
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
++++++ +++||++|+|..|++++|.|+|+..|++++.+ ++|+++.||.++..+++++++.+.++.++.++++++++
T Consensus 62 ~~llGd-gs~~gv~itY~~Q~~p~GlA~Av~~a~~fv~~---~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 62 KELLGD-GSDFGVDITYAVQPEPDGLAHAVLIAEDFVGD---DDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred hhhhcC-ccccCcceEEEecCCCCcHHHHHHHHHhhcCC---CceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 566777 88999999999999999999999999999975 89999999998766999999999998999999999999
Q ss_pred CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCcccc-----chHHHHhcCcEE-EEEec
Q 022113 82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKE-----VFPKIALEGKLF-AMVLP 155 (302)
Q Consensus 82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~-----~~~~l~~~~~v~-~~~~~ 155 (302)
+|++||++.+|+ +++++++.|||..+.+++..+|+|+|++++|+.+..-.+|...| .++.+++++... ....+
T Consensus 138 dP~rfGV~e~d~-~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 138 DPSRYGVVEFDE-DGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred CcccceEEEEcC-CCcEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence 999999999997 67999999999999999999999999999999887665555544 367788877654 45567
Q ss_pred CeeEecCChHHHHHHHHHHHHh
Q 022113 156 GFWMDIGQPRDYITGLRLYLDS 177 (302)
Q Consensus 156 g~~~digt~~~~~~a~~~~l~~ 177 (302)
|+|.|+|+++++++|+...+..
T Consensus 217 G~WlDtGt~~slleA~~~i~~~ 238 (286)
T COG1209 217 GWWLDTGTPESLLEANNFVRTV 238 (286)
T ss_pred ceEEecCChhhHHHHHHHHHHH
Confidence 8999999999999999877663
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=2.5e-29 Score=233.84 Aligned_cols=232 Identities=17% Similarity=0.223 Sum_probs=160.4
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV 89 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v 89 (302)
.+.++.+..+.+++||+++++.+++++... +++|++++||+ +++ .++.++++.+ +...+.+++..+..++..||.+
T Consensus 69 ~~~~~~~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~~~~~~~g~~ 146 (446)
T PRK14353 69 IAPDAEIFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRAADPTGYGRL 146 (446)
T ss_pred cCCCceEEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEeCCCCcceEE
Confidence 344566777888899999999999988421 36899999998 554 4578888744 5566788888887788889988
Q ss_pred EEeCCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhcC-cEEEEEec-C
Q 022113 90 VMEESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLP-G 156 (302)
Q Consensus 90 ~~d~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~~-~v~~~~~~-g 156 (302)
.++ +++++.+.|||... ...+.++|+|+|+++.| +.++.. ......+.++.+++.+ ++.++..+ +
T Consensus 147 ~~~--~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~~~ 224 (446)
T PRK14353 147 IVK--GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGLRVAVVEAPED 224 (446)
T ss_pred EEC--CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCCeEEEEecChh
Confidence 774 68999999998542 12578999999998655 444321 1111234466676664 58888876 4
Q ss_pred eeEecCChHHHHHHHHHHHHhh-----cc------------ccccccccCceEecceEEcCCcEECCCCEECC-----Cc
Q 022113 157 FWMDIGQPRDYITGLRLYLDSL-----RK------------KSSLKLATGANIVGNVLVHESAQIGEGCLIGP-----DV 214 (302)
Q Consensus 157 ~~~digt~~~~~~a~~~~l~~~-----~~------------~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~-----~~ 214 (302)
+|.++++|++|..++..+.... .. ...+.+.+++.|++++.|++++.||++|.|++ ++
T Consensus 225 ~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~ 304 (446)
T PRK14353 225 EVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGA 304 (446)
T ss_pred hcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEecc
Confidence 6999999999999886554321 00 01234555556666666666666666666665 45
Q ss_pred EECCCCEECCCcEEe-ceEEccCCEECCCcEEec
Q 022113 215 AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS 247 (302)
Q Consensus 215 ~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 247 (302)
+||++|.||+++.|. +++|+++|.|++++.+.+
T Consensus 305 ~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~ 338 (446)
T PRK14353 305 HVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN 338 (446)
T ss_pred EECCCcEECCCeEEeccceecCCeEEcCceEEec
Confidence 677777777777776 677777777777665543
No 21
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=228.16 Aligned_cols=239 Identities=18% Similarity=0.259 Sum_probs=154.3
Q ss_pred EEEEEecC--CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQET--EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~--~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.+.|+.++ ..+||+++++++... .++|++++||..+. ..+.++.+.+.++++++.+.+.+++..||.+..+
T Consensus 68 ~v~~~~~~~~~~~gt~~al~~~~~~-----~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~~~~~~~g~v~~d 140 (430)
T PRK14359 68 GVIFHTQDLENYPGTGGALMGIEPK-----HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHLADPKGYGRVVIE 140 (430)
T ss_pred ceEEEEecCccCCCcHHHHhhcccC-----CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEcCCCccCcEEEEc
Confidence 45566553 468999999885321 37899999998321 1234455556667788888888888889988775
Q ss_pred CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHhhccC-C------CCCccccchHHHHhc-CcEEEEEec-CeeE
Q 022113 93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLDRIEL-R------PTSIEKEVFPKIALE-GKLFAMVLP-GFWM 159 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~~l~~-~------~~~~~~~~~~~l~~~-~~v~~~~~~-g~~~ 159 (302)
++++..+.|+|... ...+.++|+|+|++++|..+.. . ......+.++.+++. .++.++..+ ++|.
T Consensus 141 --~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~~~~~~w~ 218 (430)
T PRK14359 141 --NGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVFVDEENFM 218 (430)
T ss_pred --CCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEEcCCCEEe
Confidence 58999999987532 2357899999999999976521 1 111224556666665 578888886 5899
Q ss_pred ecCChHHHHHHHHHHHHhhcccc-----------ccccccCceEecceEEcCCcEECCCCEE-----------CC----C
Q 022113 160 DIGQPRDYITGLRLYLDSLRKKS-----------SLKLATGANIVGNVLVHESAQIGEGCLI-----------GP----D 213 (302)
Q Consensus 160 digt~~~~~~a~~~~l~~~~~~~-----------~~~~~~~~~i~~~~~i~~~~~i~~~~~i-----------~~----~ 213 (302)
|+++|++|.+++..++....... ...+.+++.|.+++.+++++.|+++|.| ++ +
T Consensus 219 dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~i~~ 298 (430)
T PRK14359 219 GVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEESIIEN 298 (430)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEeccEEeC
Confidence 99999999999876655433211 2234555666666666666655444433 22 3
Q ss_pred cEECCCCEECCCcEEeceEEccCC----------EECCCcEEeccEECCCCEECCCcEE
Q 022113 214 VAVGPGCVVESGVRLSRCTVMRGV----------RIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 214 ~~ig~~~~i~~~~~i~~~~i~~~~----------~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
++||++|.|+++++|.+|+|+++| +|++++.|++|+||++|.||+++.+
T Consensus 299 ~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 299 SDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred CEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 344455555555555555555554 4445555666777777777776443
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=1.6e-29 Score=235.69 Aligned_cols=253 Identities=22% Similarity=0.328 Sum_probs=175.3
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
+++|+.|++++||+++++.+++++.. +++|++++||+ +.+.++.++++.|.+.+ ++++..+.+++..||++..
T Consensus 70 ~~~~i~~~~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~~~~~~yG~v~~- 144 (456)
T PRK09451 70 PLNWVLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKLDNPTGYGRITR- 144 (456)
T ss_pred CcEEEECCCCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEcCCCCCceEEEe-
Confidence 67888888899999999999998853 36899999998 55678999998886543 4566677778888999754
Q ss_pred CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHhhHh-hccC---C---CCCccccchHHHHhcC-cEEEEE------e
Q 022113 93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPAVLD-RIEL---R---PTSIEKEVFPKIALEG-KLFAMV------L 154 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~~l~-~l~~---~---~~~~~~~~~~~l~~~~-~v~~~~------~ 154 (302)
+ +++|.+|.|||... ..+++++|+|+|+++.|. .++. . ......++++.+++++ ++.+|. +
T Consensus 145 ~-~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~~~~~~~~~ 223 (456)
T PRK09451 145 E-NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAVHPQRLSEV 223 (456)
T ss_pred c-CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEEecCCHHHh
Confidence 3 68999999998642 136899999999998774 3321 1 1122357788888774 788885 4
Q ss_pred cCe--eEecCChHHHHHHHH---HHHHhhccccccccccC-ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113 155 PGF--WMDIGQPRDYITGLR---LYLDSLRKKSSLKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 228 (302)
Q Consensus 155 ~g~--~~digt~~~~~~a~~---~~l~~~~~~~~~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 228 (302)
+|+ |.|++++++|++++. .++..... .++. ..+.+++.+++++.|+++|.|.++++||++|.|+++|.|
T Consensus 224 ~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i 298 (456)
T PRK09451 224 EGVNNRLQLARLERVYQAEQAEKLLLAGVML-----RDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVL 298 (456)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE-----eCCCEEEECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceE
Confidence 566 678999999998763 22211111 1111 123345566666666666666666677777777777777
Q ss_pred eceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113 229 SRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI 278 (302)
Q Consensus 229 ~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~ 278 (302)
.+|.|+++|.|++++.|+++++++++.|++++.|.+++.|+++++|++++
T Consensus 299 ~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~ 348 (456)
T PRK09451 299 KNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFV 348 (456)
T ss_pred ecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccce
Confidence 66777777777777777666666666666666666566666665555544
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=7.4e-29 Score=230.85 Aligned_cols=255 Identities=21% Similarity=0.296 Sum_probs=180.6
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.++++.|++++||+++++.|++++.. +++|++++||+ +.+.+++++++.|+++++++++++.+.+++..||.+.++
T Consensus 63 ~~~~~~~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~~~~~~g~v~~d 140 (448)
T PRK14357 63 WVKIFLQEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLEDPTGYGRIIRD 140 (448)
T ss_pred ccEEEecCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcCCCCCcEEEEEc
Confidence 45677888899999999999999853 37899999997 557789999999988888999999998888899998876
Q ss_pred CCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhHhh-ccCCCC------CccccchHHHHhcCcEEEEEecCe--eE
Q 022113 93 ESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVLDR-IELRPT------SIEKEVFPKIALEGKLFAMVLPGF--WM 159 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l~~-l~~~~~------~~~~~~~~~l~~~~~v~~~~~~g~--~~ 159 (302)
++++ .+.|+|..+. .++.++|+|+|++++|.. ++.... ....++++.+ .++.+|.+.++ |.
T Consensus 141 --~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~~v~~~~~~~~~~~~ 214 (448)
T PRK14357 141 --GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---EKVRVVKTEDLLEIT 214 (448)
T ss_pred --CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---hheeEEecCCHHHEE
Confidence 5777 8888765431 358999999999998643 432111 1112333333 35778888888 66
Q ss_pred ecCChHHHHHHHHHHHHhhccc---cc-cccccC-ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEc
Q 022113 160 DIGQPRDYITGLRLYLDSLRKK---SS-LKLATG-ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVM 234 (302)
Q Consensus 160 digt~~~~~~a~~~~l~~~~~~---~~-~~~~~~-~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~ 234 (302)
++++|+++..+...+.....+. .. ..+.++ +.|++++.|++++.|++++.|++++.||++|.|++++.|.+|+|+
T Consensus 215 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~s~Ig 294 (448)
T PRK14357 215 GVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIVDCEIG 294 (448)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceecccEEC
Confidence 7789999988766553221111 11 113333 466777777777777777777777778888888888777777777
Q ss_pred cCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113 235 RGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEI 278 (302)
Q Consensus 235 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~ 278 (302)
++|.|. .+.+.++++++++.|+++++|.++++|+++++|++++
T Consensus 295 ~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~ 337 (448)
T PRK14357 295 NNVKII-RSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFV 337 (448)
T ss_pred CCCEEe-eeEEEEEEEeCCcEECCCcEECCcccccCCcEecCce
Confidence 777774 3566666666666666666665556666666655544
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.97 E-value=2.1e-28 Score=228.44 Aligned_cols=263 Identities=23% Similarity=0.375 Sum_probs=200.6
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.+.|+.+++++||+++++++++++... ++.|+++.||. +.+.++.++++.|++.++++++++.+.+++..||.+..+
T Consensus 66 ~~~~~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~~~~~~g~v~~d 144 (458)
T PRK14354 66 RSEFALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAENPTGYGRIIRN 144 (458)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcCCCCCceEEEEc
Confidence 356777888999999999999998531 25799999997 346679999999988778888888887788889988887
Q ss_pred CCCCcEEEEEecCCCC----CCCeEEEEEEEeCHh-hHhhccCC------CCCccccchHHHHhc-CcEEEEEecCe--e
Q 022113 93 ESTGKVEKFVEKPKLF----VGNKINAGIYLLNPA-VLDRIELR------PTSIEKEVFPKIALE-GKLFAMVLPGF--W 158 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~----~~~~~~~Giy~~~~~-~l~~l~~~------~~~~~~~~~~~l~~~-~~v~~~~~~g~--~ 158 (302)
+ +++++.+.|||... ...++++|+|+|+++ +++.++.. ......+.++.+++. .++.+|..+++ |
T Consensus 145 ~-~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~~v~~~~~~g~~~~ 223 (458)
T PRK14354 145 E-NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKNEGEKVGAYQTEDFEES 223 (458)
T ss_pred C-CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHHCCCeEEEEecCCcceE
Confidence 5 78999999987431 235789999999987 44555321 111123556667655 46889988876 4
Q ss_pred EecCChHHHHHHHHHHHHhhccc----ccccccc-CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEE
Q 022113 159 MDIGQPRDYITGLRLYLDSLRKK----SSLKLAT-GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTV 233 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~~----~~~~~~~-~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i 233 (302)
++++++++|..++..+....... ....+++ .+.|++++.|++++.|+++|.|++++.||++|.|++++.|.+++|
T Consensus 224 i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~i 303 (458)
T PRK14354 224 LGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIVDSTI 303 (458)
T ss_pred EccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEeccEE
Confidence 57779999988876554433211 1122444 356778888888888888888888899999999999999999999
Q ss_pred ccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 234 MRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 234 ~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
+++|.|+ ++.+.+++|++++.|++++.|.++++||+++++++++.+
T Consensus 304 g~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i 349 (458)
T PRK14354 304 GDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEI 349 (458)
T ss_pred CCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEE
Confidence 9999998 477788888888888888888878888888888777655
No 25
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.96 E-value=5.9e-27 Score=218.22 Aligned_cols=263 Identities=17% Similarity=0.283 Sum_probs=193.4
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.+.++.++.+.||+++++++++++... ++++++++||. +.+.++.++++.|++.+++++++..+.+++..||.+.+|
T Consensus 67 ~i~~v~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~g~~~~d 145 (450)
T PRK14360 67 GLEFVEQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLPNPKGYGRVFCD 145 (450)
T ss_pred CeEEEEeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecCCCCCccEEEEC
Confidence 467778888899999999999988532 25799999998 456779999999998888888887777788889999888
Q ss_pred CCCCcEEEEEecCCC----CCCCeEEEEEEEeCHhhHhhc-cCCC-CCcccc-chHHHHhc-CcEEEEEecCee--EecC
Q 022113 93 ESTGKVEKFVEKPKL----FVGNKINAGIYLLNPAVLDRI-ELRP-TSIEKE-VFPKIALE-GKLFAMVLPGFW--MDIG 162 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~----~~~~~~~~Giy~~~~~~l~~l-~~~~-~~~~~~-~~~~l~~~-~~v~~~~~~g~~--~dig 162 (302)
+ ++++.+|.|||.. ..+.++++|+|+|+++.|..+ +... .....+ ++...+.. .++.++...++| ..++
T Consensus 146 ~-~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~~~~~~~v~~~~~~~~i~ 224 (450)
T PRK14360 146 G-NNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLDPVMAVEVEDYQEINGIN 224 (450)
T ss_pred C-CCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHhhceEEecCCHHHhhcCC
Confidence 5 7899999999853 245789999999999877543 2211 111122 22222211 234556666654 5699
Q ss_pred ChHHHHHHHHHHHHhhc----cccccccccCc-eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCC
Q 022113 163 QPRDYITGLRLYLDSLR----KKSSLKLATGA-NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGV 237 (302)
Q Consensus 163 t~~~~~~a~~~~l~~~~----~~~~~~~~~~~-~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~ 237 (302)
+|+++..+...+..... ......+++.. .+.+++.+++++.|++++.|+++++||++|.|++++.|.+|.|+++|
T Consensus 225 ~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~~~~I~~~~ 304 (450)
T PRK14360 225 DRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIENSQIGENV 304 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEEEEEEcCCC
Confidence 99999988876654332 11112455553 57778888888888888888888899999999999988888888888
Q ss_pred EECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 238 RIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 238 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
.|+ ++.+.++++++++.|++++.|.++++|+++|+|++++.+
T Consensus 305 ~I~-~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i 346 (450)
T PRK14360 305 TVL-YSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEI 346 (450)
T ss_pred EEe-eeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEE
Confidence 884 566777777888888777777777777777777776654
No 26
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.8e-26 Score=207.48 Aligned_cols=280 Identities=17% Similarity=0.271 Sum_probs=199.0
Q ss_pred hhHHHHHhhcC----CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcC-----Cc
Q 022113 2 LNFLKEFEAKL----GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHG-----GE 72 (302)
Q Consensus 2 ~~~~~~~~~~~----g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~-----~~ 72 (302)
.+|++. +.| ...++.+..++..-+|+++|..-..-.. .++|++++||++++.+|.+++++|++.+ +-
T Consensus 85 ~e~i~~--sew~~~~~~~v~ti~s~~~~S~GDamR~id~k~li--tgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~i 160 (673)
T KOG1461|consen 85 IEYIEK--SEWYLPMSFIVVTICSGESRSVGDAMRDIDEKQLI--TGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAI 160 (673)
T ss_pred HHHHhh--ccccccccceEEEEcCCCcCcHHHHHHHHHhccee--ecceEEEeCCeeecCchHHHHHHHHHHhhhCccce
Confidence 345544 445 3456677777788899999876443211 3799999999999999999999995532 34
Q ss_pred EEEEEEeCC--CCCCcceEEEeCCCCcEEEEEe--cCCC----------------CCCCeEEEEEEEeCHhhHhhccCCC
Q 022113 73 ASIMVTKVD--EPSKYGVVVMEESTGKVEKFVE--KPKL----------------FVGNKINAGIYLLNPAVLDRIELRP 132 (302)
Q Consensus 73 ~~l~~~~~~--~~~~~g~v~~d~~~~~v~~~~e--kp~~----------------~~~~~~~~Giy~~~~~~l~~l~~~~ 132 (302)
+||++.+.. ....--.+.+|..+.+++.+.+ .+.. ...++.+++|-+++++++..+..+.
T Consensus 161 MTmv~k~~st~~~~~~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNF 240 (673)
T KOG1461|consen 161 MTMVFKESSTRETTEQVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNF 240 (673)
T ss_pred EEEEEeccccccCCcceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcc
Confidence 455555431 1112245667776788888875 1110 1357889999999999998775432
Q ss_pred C-----CccccchHHHHhcCcEEEEEecC--eeEecCChHHHHHHHHHHHHhh-----------------------cccc
Q 022113 133 T-----SIEKEVFPKIALEGKLFAMVLPG--FWMDIGQPRDYITGLRLYLDSL-----------------------RKKS 182 (302)
Q Consensus 133 ~-----~~~~~~~~~l~~~~~v~~~~~~g--~~~digt~~~~~~a~~~~l~~~-----------------------~~~~ 182 (302)
. ++.+.++-..+-..+++++.... |-..+.+.+.|....+..+.++ .+..
T Consensus 241 Dyq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~q~~~~~r~~IYk~~ 320 (673)
T KOG1461|consen 241 DYQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGNQTFSLERRNIYKSP 320 (673)
T ss_pred cceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCCceeeecccccccCc
Confidence 2 22223333334456788877764 7778888888876665544332 1122
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
...+.+.+.++.++.||.++.||.+++| .|++||+||.||.+++|.+|.||++|+||+||+|++|+|++++.|+.++.+
T Consensus 321 dv~~~~~~~v~~~~~ig~gT~Ig~g~~I-~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l 399 (673)
T KOG1461|consen 321 DVVLSHSVIVGANVVIGAGTKIGSGSKI-SNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAIL 399 (673)
T ss_pred cceehhhccccceEEecccccccCCCee-ecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCccc
Confidence 2334445667777888888888888888 589999999999999999999999999999999999999999999999988
Q ss_pred ccCcEECCCcEECCceEEcCCeEe
Q 022113 263 ENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 263 ~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
.++|++|.++++|++.++..++++
T Consensus 400 ~~g~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 400 KPGSVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred CCCcEEeeeeEeCCCccccccccc
Confidence 888888888888888888777654
No 27
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=4.5e-26 Score=196.31 Aligned_cols=256 Identities=21% Similarity=0.357 Sum_probs=189.0
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC----CC-------CCcceEEEe
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD----EP-------SKYGVVVME 92 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~----~~-------~~~g~v~~d 92 (302)
..|||++|+...+++.. +|||+++||.+++.++..+++.|++.++..+++..... .| +.+.++..+
T Consensus 96 d~gtadsLr~Iy~kikS---~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~pgqk~k~k~~~d~igi~ 172 (433)
T KOG1462|consen 96 DFGTADSLRYIYSKIKS---EDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPIPGQKGKKKQARDVIGIN 172 (433)
T ss_pred ccCCHHHHhhhhhhhcc---CCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccccCcccccccccceeeec
Confidence 56999999999999964 79999999999999999999999988776666555431 11 123456666
Q ss_pred CCCCcEEEEEec-----------------CCC-CCCCeEEEEEEEeCHhhHhhccCC--CCCccccchHHHHhc------
Q 022113 93 ESTGKVEKFVEK-----------------PKL-FVGNKINAGIYLLNPAVLDRIELR--PTSIEKEVFPKIALE------ 146 (302)
Q Consensus 93 ~~~~~v~~~~ek-----------------p~~-~~~~~~~~Giy~~~~~~l~~l~~~--~~~~~~~~~~~l~~~------ 146 (302)
++++|+...... |+. ..+.+.++++|+|+.++++.|.++ -.++..++++.+++.
T Consensus 173 e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSfk~~f~P~lvkkQ~q~~~ 252 (433)
T KOG1462|consen 173 EDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSFKADFLPYLVKKQFQKNP 252 (433)
T ss_pred cccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceeecccccchhhhhhhhcCC
Confidence 656665543321 221 146789999999999999999743 346666776654432
Q ss_pred ---------------------------CcEEEEEec--CeeEecCChHHHHHHHH--HHHHhhcccc--ccccccCceEe
Q 022113 147 ---------------------------GKLFAMVLP--GFWMDIGQPRDYITGLR--LYLDSLRKKS--SLKLATGANIV 193 (302)
Q Consensus 147 ---------------------------~~v~~~~~~--g~~~digt~~~~~~a~~--~~l~~~~~~~--~~~~~~~~~i~ 193 (302)
-++++|..+ ..+.+++|.-.|+++++ .+........ .......+.++
T Consensus 253 ~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l~~e~~~~k~~~~~~~l~g 332 (433)
T KOG1462|consen 253 PLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKLCSEAKFVKNYVKKVALVG 332 (433)
T ss_pred CcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHhccccccccchhhheeccc
Confidence 234555543 46889999999999994 3322221111 11112225566
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcE
Q 022113 194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVH 273 (302)
Q Consensus 194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~ 273 (302)
-+++++++++|++++.| ..++||++|.||++++|.+|++|+|++||+|+.|++|+||.++.||+++.+ .+|.||.+-+
T Consensus 333 ~d~iv~~~t~i~~~s~i-k~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L-~nC~Ig~~yv 410 (433)
T KOG1462|consen 333 ADSIVGDNTQIGENSNI-KRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKL-KNCIIGPGYV 410 (433)
T ss_pred hhhccCCCceeccccee-eeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCee-eeeEecCCcE
Confidence 68888899999988888 599999999999999999999999999999999999999999999999999 6688888877
Q ss_pred ECCceEEcCCe
Q 022113 274 VCDEIYSNGGV 284 (302)
Q Consensus 274 v~~~~~v~~~~ 284 (302)
|.+.....+.+
T Consensus 411 Veak~~~~~ev 421 (433)
T KOG1462|consen 411 VEAKGKHGGEV 421 (433)
T ss_pred EcccccccccE
Confidence 77655544433
No 28
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.94 E-value=1.5e-25 Score=193.66 Aligned_cols=171 Identities=37% Similarity=0.692 Sum_probs=143.4
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeC--
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKV-- 80 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~-- 80 (302)
+|+++....+++.+.|+.|++++||++|++++++++....+++|+|++||++++.|+++++++|+++++++|+++.+.
T Consensus 63 ~~l~~~~~~~~~~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~ 142 (257)
T cd06428 63 DFISDAQQEFNVPIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASR 142 (257)
T ss_pred HHHHhcccccCceEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccc
Confidence 455543334688999999988999999999999998533236899999999999999999999999999999888876
Q ss_pred CCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCC---------------------CCCccccc
Q 022113 81 DEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR---------------------PTSIEKEV 139 (302)
Q Consensus 81 ~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~---------------------~~~~~~~~ 139 (302)
+++..||++.+|+.+++|++|.|||....++++++|+|+|++++|+.++.. ..++..++
T Consensus 143 ~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~ 222 (257)
T cd06428 143 EQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQQEAQLGDDNNREGRAEVIRLEQDV 222 (257)
T ss_pred cccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccccccccccccccccccceeeehhhh
Confidence 457889999988336899999999987778899999999999999877521 12234678
Q ss_pred hHHHHhcCcEEEEEecCeeEecCChHHHHHHHHH
Q 022113 140 FPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRL 173 (302)
Q Consensus 140 ~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~ 173 (302)
++.+++++++.+|.++|+|.|++++++|+++++.
T Consensus 223 ~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 223 LTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred hhHHhccCCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 8889988999999999999999999999999864
No 29
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.94 E-value=4e-25 Score=188.27 Aligned_cols=171 Identities=73% Similarity=1.245 Sum_probs=148.0
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
+|+.+...++++++.+..+.+++||+++++.|++++... +++|++++||++++.+++++++.|+++++++++++.+.++
T Consensus 62 ~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 62 PFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred HHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 344443335688888888888999999999999998531 3689999999999999999999999999999999998888
Q ss_pred CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecC
Q 022113 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIG 162 (302)
Q Consensus 83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~dig 162 (302)
+..||++.+++++++|+++.|||..+.++++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.|+|
T Consensus 141 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 220 (233)
T cd06425 141 PSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPLRPTSIEKEIFPKMASEGQLYAYELPGFWMDIG 220 (233)
T ss_pred ccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhcccCcccchhhhHHHHHhcCCEEEEeeCCEEEcCC
Confidence 88999999985358999999999876678999999999999999887665666678899999999999999999999999
Q ss_pred ChHHHHHHHHHH
Q 022113 163 QPRDYITGLRLY 174 (302)
Q Consensus 163 t~~~~~~a~~~~ 174 (302)
+|++|++|++.+
T Consensus 221 t~~~~~~a~~~~ 232 (233)
T cd06425 221 QPKDFLKGMSLY 232 (233)
T ss_pred CHHHHHHHHHHh
Confidence 999999998765
No 30
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.92 E-value=5.7e-24 Score=185.73 Aligned_cols=168 Identities=19% Similarity=0.332 Sum_probs=140.3
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
+++++ ++.||++++|+.|++++|||+|++.+++++.+ +++++++||.+ ++.++.++++.|.+.++++|+++++.+
T Consensus 66 ~~l~~-g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i~~---~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~ 141 (292)
T PRK15480 66 QLLGD-GSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGG---DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN 141 (292)
T ss_pred HHHcC-ccccCceeEEEECCCCCCHHHHHHHHHHHhCC---CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 44555 56799999999999999999999999999964 57999999975 589999999999888888999988889
Q ss_pred CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCc-----cccchHHHHhcCcEEE-EEec
Q 022113 82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSI-----EKEVFPKIALEGKLFA-MVLP 155 (302)
Q Consensus 82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~-----~~~~~~~l~~~~~v~~-~~~~ 155 (302)
+|..||++.+|+ ++++++|.|||..+.++++++|+|+|++++++.++....+- ..++++.+++++++.. +..+
T Consensus 142 ~p~~yGvv~~d~-~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~~~l~~g~~~~~~~~~ 220 (292)
T PRK15480 142 DPERYGVVEFDQ-NGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMMGR 220 (292)
T ss_pred CcccCcEEEECC-CCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHHHHHhcCCeEEEEecC
Confidence 999999999985 78999999999887789999999999999998875322221 1356777888887654 4556
Q ss_pred C-eeEecCChHHHHHHHHHHH
Q 022113 156 G-FWMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 156 g-~~~digt~~~~~~a~~~~l 175 (302)
| .|+|+|||++|.+|+..+.
T Consensus 221 g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 221 GYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred CcEEECCCCHHHHHHHHHHHH
Confidence 8 5999999999999988765
No 31
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.92 E-value=1.1e-23 Score=184.40 Aligned_cols=161 Identities=25% Similarity=0.423 Sum_probs=131.0
Q ss_pred cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
+++++++|+.|++++|||||+++|++++++ ++|+|++||++++ +++.+++++|.+.++.++++....++
T Consensus 94 ~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~---~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~ 170 (297)
T TIGR01105 94 PPGVTIMNVRQAQPLGLGHSILCARPVVGD---NPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLAKRMPGD 170 (297)
T ss_pred CCCceEEEeeCCCcCchHHHHHHHHHHhCC---CCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEEEEcCCC
Confidence 468899999999999999999999999964 6899999999987 58999999998777666444443357
Q ss_pred CCCcceEEEeC---CCCc---EEEEEecCCCC---CCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCc
Q 022113 83 PSKYGVVVMEE---STGK---VEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGK 148 (302)
Q Consensus 83 ~~~~g~v~~d~---~~~~---v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~ 148 (302)
+..||++.+++ .+++ |.+|.|||..+ .++++++|+|+|++++|+.++....+ ...+.++.++++++
T Consensus 171 ~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~~ltd~i~~l~~~~~ 250 (297)
T TIGR01105 171 LSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQS 250 (297)
T ss_pred CccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCCCCCeeeHHHHHHHHHhcCC
Confidence 88999999842 1454 58999999754 36899999999999999988643221 12366788888899
Q ss_pred EEEEEecCeeEecCChHHHHHHHHHH
Q 022113 149 LFAMVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 149 v~~~~~~g~~~digt~~~~~~a~~~~ 174 (302)
+.++.++|+|+|+|+|++|++|+..+
T Consensus 251 v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 251 VDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEEeccEEECCCCHHHHHHHHHHH
Confidence 99999999999999999999996543
No 32
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.92 E-value=8.2e-24 Score=184.49 Aligned_cols=168 Identities=20% Similarity=0.362 Sum_probs=140.1
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
+++++ ++.||+++.|+.|++++|||+|++++++++.+ ++|++++||. +++.++.++++.|.+.++++++++++.+
T Consensus 62 ~~lg~-g~~~g~~i~~~~q~~~~Gta~al~~a~~~l~~---~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 62 QLLGD-GSQWGVNLSYAVQPSPDGLAQAFIIGEDFIGG---DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred HHhcc-ccccCceEEEEEccCCCCHHHHHHHHHHHhCC---CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 44444 56799999999999999999999999999964 6899999997 4688999999999888888999999988
Q ss_pred CCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEe-c
Q 022113 82 EPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVL-P 155 (302)
Q Consensus 82 ~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~-~ 155 (302)
+|..||++.+|+ +++|++|.|||..+.++++++|+|+|++++++.++....+ ...++++.+++++++.++.+ +
T Consensus 138 ~p~~yGvv~~d~-~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~~~~ 216 (286)
T TIGR01207 138 DPERYGVVEFDS-NGRAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRVYLEEGRLSVELLGR 216 (286)
T ss_pred CHHHCceEEECC-CCeEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEEecC
Confidence 999999999986 7899999999987778899999999999999877422111 12366777888887766665 6
Q ss_pred Ce-eEecCChHHHHHHHHHHH
Q 022113 156 GF-WMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 156 g~-~~digt~~~~~~a~~~~l 175 (302)
|+ |.|+|||++|++|+..+.
T Consensus 217 g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 217 GYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred CCEEEeCCCHHHHHHHHHHHH
Confidence 76 999999999999987653
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.92 E-value=4.1e-24 Score=183.72 Aligned_cols=172 Identities=37% Similarity=0.694 Sum_probs=142.2
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCC-CCcEEEEeCCeecCcCHHHHHHHHHHcCC--cEEEEEEe
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVISEYPFAEMIEFHKAHGG--EASIMVTK 79 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~-~~~~lv~~gD~l~~~~l~~~~~~~~~~~~--~~~l~~~~ 79 (302)
+++++ ...++++++|+.|++++|||+||++|++++..+. +++|++++||++++.++.++++.|+++++ .+++...+
T Consensus 63 ~~~~~-~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (248)
T PF00483_consen 63 EHLGS-GYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP 141 (248)
T ss_dssp HHHTT-SGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE
T ss_pred ccccc-cccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhcccccccccccccc
Confidence 44555 3347889999999999999999999999997632 23499999999999999999999999887 56777778
Q ss_pred CCCCCCcceEEEeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhcc----C--CCCCccccchHHHHhcCc-EEE
Q 022113 80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIE----L--RPTSIEKEVFPKIALEGK-LFA 151 (302)
Q Consensus 80 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~----~--~~~~~~~~~~~~l~~~~~-v~~ 151 (302)
.++++.||++.+|+ +++|++|.|||.... +.++++|+|+|++++|+.+. . .......+.++.+++++. +.+
T Consensus 142 ~~~~~~~g~v~~d~-~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~ 220 (248)
T PF00483_consen 142 VEDPSRYGVVEVDE-DGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYA 220 (248)
T ss_dssp SSGGGGSEEEEEET-TSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEE
T ss_pred ccccccceeeeecc-ceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEE
Confidence 88889999999995 789999999999876 78999999999999998772 1 223344667888888874 557
Q ss_pred EEecC--eeEecCChHHHHHHHHHHHH
Q 022113 152 MVLPG--FWMDIGQPRDYITGLRLYLD 176 (302)
Q Consensus 152 ~~~~g--~~~digt~~~~~~a~~~~l~ 176 (302)
+..++ +|+|+|+|++|++|++.+++
T Consensus 221 ~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 221 FIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred EEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 78888 79999999999999987753
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.91 E-value=2.4e-23 Score=178.09 Aligned_cols=162 Identities=23% Similarity=0.370 Sum_probs=137.3
Q ss_pred hhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcc
Q 022113 9 EAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYG 87 (302)
Q Consensus 9 ~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g 87 (302)
++.|++++.|..|++++||++|++++++++.. ++|++++||++ .+.++.++++.|.++++++++++.+.+++..||
T Consensus 68 ~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~---~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 144 (240)
T cd02538 68 GSDLGIRITYAVQPKPGGLAQAFIIGEEFIGD---DPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVNDPERYG 144 (240)
T ss_pred ccccCceEEEeeCCCCCCHHHHHHHHHHhcCC---CCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCchhcCc
Confidence 45689999999998899999999999999864 68999999984 577899999999888888999998888888999
Q ss_pred eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC-----CCccccchHHHHhcCcEEEEEec--CeeEe
Q 022113 88 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP-----TSIEKEVFPKIALEGKLFAMVLP--GFWMD 160 (302)
Q Consensus 88 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~-----~~~~~~~~~~l~~~~~v~~~~~~--g~~~d 160 (302)
++.+|+ +|+|+.+.|||..+...++++|+|+|++++|+.++... .....++++.+++++++.++.++ |+|.|
T Consensus 145 ~v~~d~-~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~~~~~~g~w~d 223 (240)
T cd02538 145 VVEFDE-NGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPSARGELEITDVNNEYLEKGKLSVELLGRGFAWLD 223 (240)
T ss_pred eEEecC-CCcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCCCCCeEEhHHHHHHHHHhCCeEEEEeCCCcEEEe
Confidence 999986 78999999999877778999999999999998875211 11124677888888888888776 99999
Q ss_pred cCChHHHHHHHHHH
Q 022113 161 IGQPRDYITGLRLY 174 (302)
Q Consensus 161 igt~~~~~~a~~~~ 174 (302)
+|+|++|.++++.+
T Consensus 224 igt~~~~~~a~~~~ 237 (240)
T cd02538 224 TGTHESLLEASNFV 237 (240)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999998755
No 35
>PRK10122 GalU regulator GalF; Provisional
Probab=99.91 E-value=5.8e-23 Score=180.23 Aligned_cols=160 Identities=24% Similarity=0.421 Sum_probs=132.5
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCCC
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEP 83 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~~ 83 (302)
+++++.|+.|++++|||+|+++|++++.+ ++|+|++||++++ +|+.++++.|.+.+++++++....+++
T Consensus 95 ~~~~i~~~~q~~~lGtg~al~~a~~~l~~---~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~~~~~~~~~ 171 (297)
T PRK10122 95 PGVTIMNVRQGQPLGLGHSILCARPAIGD---NPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDL 171 (297)
T ss_pred CCceEEEeecCCcCchHHHHHHHHHHcCC---CCEEEEECCeeccCccccccchhHHHHHHHHHHhCCcEEEEEECCCCC
Confidence 57899999999999999999999999953 7899999999886 589999999988877765555444578
Q ss_pred CCcceEEEeC---CCC---cEEEEEecCCCC---CCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcCcE
Q 022113 84 SKYGVVVMEE---STG---KVEKFVEKPKLF---VGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEGKL 149 (302)
Q Consensus 84 ~~~g~v~~d~---~~~---~v~~~~ekp~~~---~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~v 149 (302)
..||++.+++ .++ +|++|.|||..+ .++++++|+|+|++++|+.++.... ....++++.+++++++
T Consensus 172 ~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~~e~~ltd~i~~l~~~~~v 251 (297)
T PRK10122 172 SEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPGAWGRIQLTDAIAELAKKQSV 251 (297)
T ss_pred CCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHhCCCE
Confidence 8999999862 245 789999999754 2689999999999999988864211 1224677888888999
Q ss_pred EEEEecCeeEecCChHHHHHHHHHH
Q 022113 150 FAMVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 150 ~~~~~~g~~~digt~~~~~~a~~~~ 174 (302)
.+|.++|+|+|+|+|++|++++..+
T Consensus 252 ~~~~~~G~w~DiG~p~~~~~a~~~~ 276 (297)
T PRK10122 252 DAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred EEEEeCCEEEcCCCHHHHHHHHHHH
Confidence 9999999999999999999998765
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.91 E-value=7.9e-23 Score=176.12 Aligned_cols=152 Identities=32% Similarity=0.486 Sum_probs=132.3
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCC
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEEST 95 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~ 95 (302)
++|..|.+++|||+|++++++++.. ++|++++||++++.|++++++.|.+.++++|++.. +++..||.+.+| +
T Consensus 94 ~~~~~~~~~~gt~~al~~~~~~i~~---e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~--~~~~~yG~v~~d--~ 166 (254)
T TIGR02623 94 VTLVDTGESTQTGGRLKRVREYLDD---EAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV--QPPGRFGALDLE--G 166 (254)
T ss_pred eeeeecCCcCCcHHHHHHHHHhcCC---CeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEEC--C
Confidence 4566777889999999999999963 78999999999999999999999998888887655 466789999987 3
Q ss_pred CcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113 96 GKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 96 ~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l 175 (302)
++|++|.|||... ..++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.|+|+|++|.+++..+.
T Consensus 167 ~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~ 245 (254)
T TIGR02623 167 EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGDATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWE 245 (254)
T ss_pred CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhccccCchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHH
Confidence 5899999999654 578999999999999998876666677789999999999999999999999999999988877653
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.89 E-value=1.1e-21 Score=172.53 Aligned_cols=158 Identities=25% Similarity=0.294 Sum_probs=131.8
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecC--------cCHHHHHHHHHHcCCcEEEEEEeCCCCC
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISE--------YPFAEMIEFHKAHGGEASIMVTKVDEPS 84 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~--------~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (302)
+..+.|..|++++|||+|+++|++++.+ ++|+|++||++++ .++.++++.|.+.+++ ++++.+.+++.
T Consensus 101 ~~~i~~~~q~~~~Gtg~Av~~a~~~~~~---~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~~~~~ 176 (302)
T PRK13389 101 HVTIMQVRQGLAKGLGHAVLCAHPVVGD---EPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPVADVT 176 (302)
T ss_pred CceEEEeecCCCCChHHHHHHHHHHcCC---CCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEcccCC
Confidence 4678899999999999999999999853 7899999999874 7899999999887766 67777888888
Q ss_pred CcceEEEeC------CCCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCC-----CccccchHHHHhcCcEEE
Q 022113 85 KYGVVVMEE------STGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPT-----SIEKEVFPKIALEGKLFA 151 (302)
Q Consensus 85 ~~g~v~~d~------~~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~-----~~~~~~~~~l~~~~~v~~ 151 (302)
.||++.+++ .++++..|.|||.. +.++++++|+|+|++++|+.++.... ....++++.+++++++.+
T Consensus 177 ~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~ 256 (302)
T PRK13389 177 AYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEA 256 (302)
T ss_pred cceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCCCCCeeeHHHHHHHHHHcCCEEE
Confidence 999998863 13579999999973 34689999999999999988853221 223466788888899999
Q ss_pred EEecCeeEecCChHHHHHHHHHH
Q 022113 152 MVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 152 ~~~~g~~~digt~~~~~~a~~~~ 174 (302)
|.++|+|+|+|+|++|++|+..+
T Consensus 257 ~~~~G~w~DIGtpe~~~~a~~~~ 279 (302)
T PRK13389 257 YHMKGKSHDCGNKLGYMQAFVEY 279 (302)
T ss_pred EEeeeEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999997654
No 38
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.88 E-value=9e-21 Score=161.77 Aligned_cols=168 Identities=30% Similarity=0.533 Sum_probs=139.3
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
+++++ +.+|++++.++.++.++||+++++.|++++.. ++|++++||++++.++.++++.|.+++.++++++.+.++
T Consensus 62 ~~~~~-~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~---~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 62 EALGD-GSRFGVRITYILQEEPLGLAHAVLAARDFLGD---EPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred HHhcc-hhhcCCeEEEEECCCCCChHHHHHHHHHhcCC---CCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 34444 33578899999998899999999999999853 689999999999999999999999888899999998888
Q ss_pred CCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcC-cEEEEEecC
Q 022113 83 PSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEG-KLFAMVLPG 156 (302)
Q Consensus 83 ~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~-~v~~~~~~g 156 (302)
+..||.+.+| +++|..+.|||......+.++|+|+|++++|+.++..... ...++++.+++++ ++.++.+++
T Consensus 138 ~~~~g~~~~d--~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~~~ 215 (236)
T cd04189 138 PRRFGVAVVD--DGRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIVTG 215 (236)
T ss_pred cccceEEEEc--CCeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEcCc
Confidence 8889998887 4599999999976656789999999999999877432111 1235677777664 689999999
Q ss_pred eeEecCChHHHHHHHHHHHH
Q 022113 157 FWMDIGQPRDYITGLRLYLD 176 (302)
Q Consensus 157 ~~~digt~~~~~~a~~~~l~ 176 (302)
+|.|++||++|.+++..+++
T Consensus 216 ~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 216 WWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred eEEeCCCHHHHHHHHHHHHh
Confidence 99999999999999987765
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.87 E-value=7.5e-21 Score=160.67 Aligned_cols=152 Identities=24% Similarity=0.407 Sum_probs=130.2
Q ss_pred cCCcEEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHH--HcCCcEEEEEEeCCCCCCcc
Q 022113 11 KLGIKIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHK--AHGGEASIMVTKVDEPSKYG 87 (302)
Q Consensus 11 ~~g~~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~g 87 (302)
.|++++.|..+. +.+||+++++.+++++.. ++|++++||++++.++.++++.|. +.++.+++...+.+++..||
T Consensus 67 ~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~~---~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 143 (221)
T cd06422 67 RFGLRITISDEPDELLETGGGIKKALPLLGD---EPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNPGHNGVG 143 (221)
T ss_pred cCCceEEEecCCCcccccHHHHHHHHHhcCC---CCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcCCCCCcc
Confidence 589999999887 789999999999999854 789999999999999999999997 45667777777777778899
Q ss_pred eEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHH
Q 022113 88 VVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDY 167 (302)
Q Consensus 88 ~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~ 167 (302)
.+.+++ ++++..+.|+|.. .+.++|+|+|++++|..+...... ..++++.+++++++.++.++|+|.|+++|++|
T Consensus 144 ~v~~d~-~~~v~~~~~~~~~---~~~~~Giyi~~~~~l~~l~~~~~~-~~d~~~~l~~~~~~~~~~~~g~w~di~t~~~~ 218 (221)
T cd06422 144 DFSLDA-DGRLRRGGGGAVA---PFTFTGIQILSPELFAGIPPGKFS-LNPLWDRAIAAGRLFGLVYDGLWFDVGTPERL 218 (221)
T ss_pred eEEECC-CCcEeecccCCCC---ceEEEEEEEEcHHHHhhCCcCccc-HHHHHHHHHHcCCeEEEecCCEEEcCCCHHHH
Confidence 999986 6899999999853 789999999999999888654322 35788888888999999999999999999999
Q ss_pred HHH
Q 022113 168 ITG 170 (302)
Q Consensus 168 ~~a 170 (302)
.+|
T Consensus 219 ~~a 221 (221)
T cd06422 219 LAA 221 (221)
T ss_pred hhC
Confidence 764
No 40
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.86 E-value=3.9e-20 Score=156.26 Aligned_cols=155 Identities=34% Similarity=0.610 Sum_probs=135.0
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
|+.++.+..+.+.+||+++++.+++.+.. ++|++++||++++.++.++++.|.+.+.++++++.+.+++..||.+.+
T Consensus 68 ~~~~~~~~~~~~~~G~~~~l~~a~~~~~~---~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (223)
T cd06915 68 GGIRIYYVIEPEPLGTGGAIKNALPKLPE---DQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPDASRYGNVTV 144 (223)
T ss_pred cCceEEEEECCCCCcchHHHHHHHhhcCC---CCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCCCCcceeEEE
Confidence 57788888888899999999999999843 789999999999999999999998888888888888777778999988
Q ss_pred eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHH
Q 022113 92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITG 170 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a 170 (302)
++ ++++..+.|||......+.++|+|+|++++|+.+.....+...++++.++.++++.+|.++++|+||+++++|.+|
T Consensus 145 d~-~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~dI~t~~dl~~a 222 (223)
T cd06915 145 DG-DGRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPADAFSLEADVLPALVKRGRLYGFEVDGYFIDIGIPEDYARA 222 (223)
T ss_pred CC-CCeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCccCCChHHHHHHHHHhcCcEEEEecCCeEEecCCHHHHHhh
Confidence 86 6899999999876556789999999999999887654445556788888888899999999999999999999876
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.86 E-value=4.2e-20 Score=159.30 Aligned_cols=149 Identities=32% Similarity=0.532 Sum_probs=127.3
Q ss_pred ecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEE
Q 022113 20 QETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 99 (302)
Q Consensus 20 ~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~ 99 (302)
.+.+.+||++++++|++++.. +++|++++||++++.++.++++.|.+.++++|++.. .++..||.+.+|+ +++|.
T Consensus 97 ~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~--~~~~~~g~v~~d~-~g~V~ 171 (253)
T cd02524 97 DTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAV--HPPGRFGELDLDD-DGQVT 171 (253)
T ss_pred ccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEe--cCCCcccEEEECC-CCCEE
Confidence 344578899999999999853 268999999999999999999999988888887766 3567899999986 68999
Q ss_pred EEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113 100 KFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 100 ~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~ 174 (302)
.+.|||... +.++++|+|+|++++|+.++....++..++++.+++++++.+|.++|+|.+|+++++|.+++..+
T Consensus 172 ~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~ 245 (253)
T cd02524 172 SFTEKPQGD-GGWINGGFFVLEPEVFDYIDGDDTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELW 245 (253)
T ss_pred EEEECCCCC-CceEEEEEEEECHHHHHhhccccchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHH
Confidence 999998654 46899999999999999887654445567889999999999999999999999999999998765
No 42
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.85 E-value=7.2e-20 Score=159.10 Aligned_cols=158 Identities=30% Similarity=0.395 Sum_probs=127.8
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEeCC--CCCCcc
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTKVD--EPSKYG 87 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~g 87 (302)
+++++|..|++++|||++|+++++++.. ++|+|++||+++.. +++++++.|+++++++ +++.+.+ ++..||
T Consensus 92 ~~~i~~~~~~~~~Gt~~al~~~~~~i~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~g 167 (267)
T cd02541 92 LANIHYVRQKEPLGLGHAVLCAKPFIGD---EPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASV-IAVEEVPPEDVSKYG 167 (267)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHhCC---CceEEEECCeEEeCCchHHHHHHHHHHHhCCCE-EEEEEcChhcCccce
Confidence 6788999999999999999999999864 68999999997754 4999999998776653 5554443 567899
Q ss_pred eEEEeCC---CCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEecCe
Q 022113 88 VVVMEES---TGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVLPGF 157 (302)
Q Consensus 88 ~v~~d~~---~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~~g~ 157 (302)
++.+|+. .++|..+.|||.. ..+.++++|+|+|++++|+.++..... ...++++.+++++++.+|.++|+
T Consensus 168 ~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~~~~~g~ 247 (267)
T cd02541 168 IVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYAYVFEGK 247 (267)
T ss_pred EEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEEEEeeeE
Confidence 9999852 3589999999863 456789999999999999888542211 12355788888889999999999
Q ss_pred eEecCChHHHHHHHHHH
Q 022113 158 WMDIGQPRDYITGLRLY 174 (302)
Q Consensus 158 ~~digt~~~~~~a~~~~ 174 (302)
|.|+|+|++|++++..+
T Consensus 248 w~digt~~~y~~a~~~~ 264 (267)
T cd02541 248 RYDCGNKLGYLKATVEF 264 (267)
T ss_pred EEeCCCHHHHHHHHHHH
Confidence 99999999999998755
No 43
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.85 E-value=5.4e-20 Score=154.76 Aligned_cols=147 Identities=39% Similarity=0.756 Sum_probs=129.9
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
|+.++.++.++++.||+++++.+++++. +++|++++||++++.++.++++.|.++++++++++.+.+++..||.+.+
T Consensus 68 ~~~~i~~~~~~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (217)
T cd04181 68 FGVNIEYVVQEEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVEDPSRYGVVEL 144 (217)
T ss_pred cCceEEEEeCCCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEEEE
Confidence 6889999999888999999999999983 3799999999999999999999999989899999998888889999999
Q ss_pred eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC---CCccccchHHHHhcCcEEEEEecCeeEecC
Q 022113 92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP---TSIEKEVFPKIALEGKLFAMVLPGFWMDIG 162 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~---~~~~~~~~~~l~~~~~v~~~~~~g~~~dig 162 (302)
|+ +++|..+.|||......++++|+|+|++++|+.++... ..+..++++.++++.++.++.++|+|.|+|
T Consensus 145 d~-~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w~dig 217 (217)
T cd04181 145 DD-DGRVTRFVEKPTLPESNLANAGIYIFEPEILDYIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYWLDIG 217 (217)
T ss_pred cC-CCcEEEEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEEecCC
Confidence 86 68999999999876678999999999999998876432 345567888888889999999999999986
No 44
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.85 E-value=1.2e-19 Score=153.18 Aligned_cols=154 Identities=35% Similarity=0.658 Sum_probs=129.7
Q ss_pred hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceE
Q 022113 10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVV 89 (302)
Q Consensus 10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v 89 (302)
.+|++++.|+.++.++||+++++.+.+.. +++|+|++||++++.++.++++.|++++.++++++.+......||++
T Consensus 66 ~~~~~~i~~~~~~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 141 (220)
T cd06426 66 SKFGVNISYVREDKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEVQVPYGVV 141 (220)
T ss_pred cccCccEEEEECCCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCCCCcceEE
Confidence 35788899988888899999998887765 27899999999999999999999998888888888876666779999
Q ss_pred EEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcC-cEEEEEecCeeEecCChHHHH
Q 022113 90 VMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG-KLFAMVLPGFWMDIGQPRDYI 168 (302)
Q Consensus 90 ~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~-~v~~~~~~g~~~digt~~~~~ 168 (302)
..| +++|+.+.|||.. ..++++|+|+|++++++.+.........++++.+++++ ++.+|.++++|+|++||++|.
T Consensus 142 ~~d--~~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~~~~~l~~~~~~~i~~~~~i~~~~~~~~w~~igt~~dl~ 217 (220)
T cd06426 142 ETE--GGRITSIEEKPTH--SFLVNAGIYVLEPEVLDLIPKNEFFDMPDLIEKLIKEGKKVGVFPIHEYWLDIGRPEDYE 217 (220)
T ss_pred EEC--CCEEEEEEECCCC--CCeEEEEEEEEcHHHHhhcCCCCCcCHHHHHHHHHHCCCcEEEEEeCCeEEeCCCHHHHH
Confidence 887 4899999999865 46889999999999999886554332356788887764 699999999999999999998
Q ss_pred HHH
Q 022113 169 TGL 171 (302)
Q Consensus 169 ~a~ 171 (302)
+|+
T Consensus 218 ~a~ 220 (220)
T cd06426 218 KAN 220 (220)
T ss_pred hhC
Confidence 873
No 45
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.84 E-value=9.8e-20 Score=157.66 Aligned_cols=153 Identities=29% Similarity=0.401 Sum_probs=122.7
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEeC--CCCCCcce
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTKV--DEPSKYGV 88 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~g~ 88 (302)
.++.|..|.+++||+++++++++++.+ ++|+|++||+++.. ++.++++.|.++++++ +++... +++..||+
T Consensus 93 ~~i~~~~~~~~~G~~~al~~~~~~~~~---~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~ 168 (260)
T TIGR01099 93 ATIFYVRQKEQKGLGHAVLCAEPFVGD---EPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGV 168 (260)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhhCC---CCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCce
Confidence 567888888899999999999999843 78999999997653 6999999998888775 444443 36678999
Q ss_pred EEEe---CCCCcEEEEEecCC--CCCCCeEEEEEEEeCHhhHhhccCCCCC-----ccccchHHHHhcCcEEEEEecCee
Q 022113 89 VVME---ESTGKVEKFVEKPK--LFVGNKINAGIYLLNPAVLDRIELRPTS-----IEKEVFPKIALEGKLFAMVLPGFW 158 (302)
Q Consensus 89 v~~d---~~~~~v~~~~ekp~--~~~~~~~~~Giy~~~~~~l~~l~~~~~~-----~~~~~~~~l~~~~~v~~~~~~g~~ 158 (302)
+.+| +.+++|+.|.|||. .....++++|+|+|++++|+.+.....+ ...++++.+++++++.+|.++|+|
T Consensus 169 v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~~~~~g~w 248 (260)
T TIGR01099 169 IDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYAYKFKGKR 248 (260)
T ss_pred EEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEEEEcceEE
Confidence 9886 22469999999995 2346789999999999999888532221 123557778888999999999999
Q ss_pred EecCChHHHHHH
Q 022113 159 MDIGQPRDYITG 170 (302)
Q Consensus 159 ~digt~~~~~~a 170 (302)
.|+|+|++|+++
T Consensus 249 ~digs~~~y~~a 260 (260)
T TIGR01099 249 YDCGSKLGYLKA 260 (260)
T ss_pred EeCCCHHHHhhC
Confidence 999999999864
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=1.7e-19 Score=150.22 Aligned_cols=167 Identities=31% Similarity=0.432 Sum_probs=135.2
Q ss_pred HHHHHhhc-CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCc---CHHHHHHHHHHcCCcEEEEEEe
Q 022113 4 FLKEFEAK-LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEY---PFAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 4 ~~~~~~~~-~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~---~l~~~~~~~~~~~~~~~l~~~~ 79 (302)
+++.+.+- -+.++.|+.|++++|.|||+++|++++++ ++|.|+.||.++.. .+++|++.|.+.+.+ .+.+.+
T Consensus 86 ~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg~---EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s-vi~v~e 161 (291)
T COG1210 86 LLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVGD---EPFAVLLPDDLVDSEKPCLKQMIELYEETGGS-VIGVEE 161 (291)
T ss_pred HHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcCC---CceEEEeCCeeecCCchHHHHHHHHHHHhCCc-EEEEEE
Confidence 34444332 37899999999999999999999999986 89999999997753 388999999887764 345555
Q ss_pred C--CCCCCcceEE----EeCCCCcEEEEEecCCC--CCCCeEEEEEEEeCHhhHhhccCCCCCccccc-----hHHHHhc
Q 022113 80 V--DEPSKYGVVV----MEESTGKVEKFVEKPKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEV-----FPKIALE 146 (302)
Q Consensus 80 ~--~~~~~~g~v~----~d~~~~~v~~~~ekp~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~-----~~~l~~~ 146 (302)
. ++.++||++. .++.-.++..+.|||+. ..+++...|.|+|+|++|+.|+.......+|+ +..+++.
T Consensus 162 v~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G~ggEiQLTDai~~L~~~ 241 (291)
T COG1210 162 VPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPGAGGEIQLTDAIKKLLKK 241 (291)
T ss_pred CCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCCCCCEeeHHHHHHHHHhh
Confidence 5 4678999998 33212589999999954 46899999999999999999987655554555 5567788
Q ss_pred CcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113 147 GKLFAMVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 147 ~~v~~~~~~g~~~digt~~~~~~a~~~~ 174 (302)
.++.+|.++|..+|+|++..|.+|+..+
T Consensus 242 ~~v~a~~~~GkryD~G~k~Gyi~a~v~~ 269 (291)
T COG1210 242 EPVLAYVFEGKRYDCGSKLGYIKANVEF 269 (291)
T ss_pred CcEEEEEecccEEccCCcccHHHHHHHH
Confidence 9999999999999999999999997654
No 47
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.82 E-value=7e-20 Score=154.38 Aligned_cols=150 Identities=25% Similarity=0.330 Sum_probs=123.2
Q ss_pred cchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHHHhhcc---------------ccccccccCceEecceEEcCCc
Q 022113 138 EVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYLDSLRK---------------KSSLKLATGANIVGNVLVHESA 202 (302)
Q Consensus 138 ~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l~~~~~---------------~~~~~~~~~~~i~~~~~i~~~~ 202 (302)
+.++.+++.+ ++..+|||.|+ ++|+++++.++..... ...+.+++++.+.+++.|++++
T Consensus 32 ~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v~IG~~~ 105 (231)
T TIGR03532 32 ESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQVIIGDNA 105 (231)
T ss_pred hheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCeEECCCC
Confidence 4445555444 67789999999 9999999988865321 2335678888888889999999
Q ss_pred EECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECCCCEECCCcEEccCcEECCCc
Q 022113 203 QIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 203 ~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
.|++++.|.++++||++|.|++++.|. +++|+++|.|+.++.+. .++|+++++||+++.|.+++.||+++
T Consensus 106 ~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~~~ 185 (231)
T TIGR03532 106 VIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGKGA 185 (231)
T ss_pred EEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECCCC
Confidence 999999999999999999999999996 89999999999999996 48899999999999999999999999
Q ss_pred EECCceEEc----CCeE---ecCccccc
Q 022113 273 HVCDEIYSN----GGVV---LPHKEIKS 293 (302)
Q Consensus 273 ~v~~~~~v~----~~~v---~~~~~~~~ 293 (302)
.|++++++. ++++ .|++.++.
T Consensus 186 ~IgagsvV~~di~~~~vv~G~PA~~i~~ 213 (231)
T TIGR03532 186 VVAAGAIVTEDVPPNTVVAGVPAKVIKQ 213 (231)
T ss_pred EECCCCEEccccCCCcEEEecCCEEecc
Confidence 999998864 4444 47766653
No 48
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.71 E-value=1.2e-16 Score=125.77 Aligned_cols=111 Identities=21% Similarity=0.320 Sum_probs=102.0
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCC
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWH 253 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~ 253 (302)
..+.+++++.|.+++.|+.++.|+++++|.++ ..||.+|-|.++|+|+ .+.|+++|.||+++.|+.|.|+++
T Consensus 16 ~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~ 95 (176)
T COG0663 16 PTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDN 95 (176)
T ss_pred CceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCC
Confidence 35788999999999999999999999999874 4999999999999997 689999999999999999999999
Q ss_pred CEECCCcEEccCcEECCCcEECCceEEcCCeEecCcccc
Q 022113 254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK 292 (302)
Q Consensus 254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~~ 292 (302)
|.||-+++|.+++.||++|.||+|+.+.++..+|.+.+.
T Consensus 96 ~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~ 134 (176)
T COG0663 96 VLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLV 134 (176)
T ss_pred cEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEe
Confidence 999999999999999999999999999998887776553
No 49
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.71 E-value=1.9e-16 Score=129.74 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=98.5
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCC
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWH 253 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~ 253 (302)
..+.+++++.+.++++|++++.|+++|+|.+ .++||++|.|+++|.| .+|+|++++.|++++.|.+|+|+++
T Consensus 13 ~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~ 92 (192)
T TIGR02287 13 PEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRN 92 (192)
T ss_pred CCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCC
Confidence 4567888888888999999999999999874 5789999999999999 4799999999999999999999999
Q ss_pred CEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+.||.++.+.++++||+++.|++++.+.+++.+|++.+
T Consensus 93 ~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l 130 (192)
T TIGR02287 93 ALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYL 130 (192)
T ss_pred CEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeE
Confidence 99999999999999999999999999988887776655
No 50
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.71 E-value=3.2e-16 Score=124.88 Aligned_cols=108 Identities=20% Similarity=0.326 Sum_probs=96.2
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCCC
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHS 254 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~ 254 (302)
.+.+++++.+.+++.+++++.|+++|+|.+ .+.||++|.|+++|.| .+++|+++|.|++++.+.+++|++++
T Consensus 6 ~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~ 85 (155)
T cd04745 6 SSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNA 85 (155)
T ss_pred CeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCC
Confidence 456778888889999999999999999876 5899999999999999 57999999999999999999999999
Q ss_pred EECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113 255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
+|+.++.|.+++.|++++.|++++++.+++.+|++.
T Consensus 86 ~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~ 121 (155)
T cd04745 86 LVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRS 121 (155)
T ss_pred EECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCC
Confidence 999999999999999999999999887766665544
No 51
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.70 E-value=4.1e-16 Score=125.39 Aligned_cols=110 Identities=24% Similarity=0.404 Sum_probs=95.2
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcE
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWAR 261 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~ 261 (302)
..+.+.+++.+.++++|++++.|+++|.|.++++|+++|.|++++.|.+|+|++++.|++++.+.++++++++.|++++.
T Consensus 22 ~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~ 101 (163)
T cd05636 22 EGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTI 101 (163)
T ss_pred CCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcE
Confidence 34567777888888889999999999999889999999999999999999999999999999999999999999999998
Q ss_pred Ecc------------------------CcEECCCcEECCceEEcCCeEecCccc
Q 022113 262 VEN------------------------MTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 262 i~~------------------------~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+.+ +++|++++.++.++.+.++++++++.+
T Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ig~~~~ 155 (163)
T cd05636 102 TANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVKIGPGSW 155 (163)
T ss_pred EcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcEECCCCE
Confidence 843 578888888888888888887776553
No 52
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.69 E-value=7.1e-16 Score=123.74 Aligned_cols=110 Identities=12% Similarity=0.139 Sum_probs=96.6
Q ss_pred cccccccCceEecceEEcCCcEECCCCEEC---CCcEECCCCEECCCcEEec-----------eEEccCCEECCCcEEec
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIG---PDVAVGPGCVVESGVRLSR-----------CTVMRGVRIKKHACISS 247 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~ 247 (302)
..+.+++++.+.+++.+++++.|+++|.|. +.++||++|.|+++|.|.+ +.|++++.+..++++.+
T Consensus 4 ~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~ 83 (164)
T cd04646 4 PGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEA 83 (164)
T ss_pred CCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEe
Confidence 346688888888899999999999999885 4589999999999999974 46888888988999999
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
++||++|+|++++.|.+++.||+++.|++++++.++..+|+..+
T Consensus 84 ~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~v 127 (164)
T cd04646 84 LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTV 127 (164)
T ss_pred eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeE
Confidence 99999999999999999999999999999999998887776654
No 53
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.68 E-value=5.1e-16 Score=127.56 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=92.9
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----ceEEccCCEECCCcEEeccEECCCC
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISSSIIGWHS 254 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~ 254 (302)
.+.+++++.|.+++.|++++.|+++|+|.++ ++|+++|.|+++|.|+ +++|++++.|++++.+.+++|+++|
T Consensus 16 ~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v 95 (196)
T PRK13627 16 TAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDA 95 (196)
T ss_pred CeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCC
Confidence 4567788888888888888888888888654 5788889999998885 5899999999999999999999999
Q ss_pred EECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
+||.++.+.+++.||+++.|+++++|..++.+|+.
T Consensus 96 ~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~ 130 (196)
T PRK13627 96 LVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKR 130 (196)
T ss_pred EECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCC
Confidence 99999999999999999999999998887755443
No 54
>PLN02296 carbonate dehydratase
Probab=99.68 E-value=6.9e-16 Score=132.38 Aligned_cols=109 Identities=19% Similarity=0.304 Sum_probs=97.5
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEEccCCEECCCcEEecc
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS 248 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~ 248 (302)
.+.+.+++.+.+++.|++++.|+.+|+|.+. ++||++|.|+++|.|. +++|+++|.|+++|.|.+|
T Consensus 58 ~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~ 137 (269)
T PLN02296 58 DAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGC 137 (269)
T ss_pred CCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCC
Confidence 4667788888888999999999999998875 4999999999999995 6899999999999999999
Q ss_pred EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+|+++|.||.++.|.+++.|++++.|+++++|.+++.+|+..+
T Consensus 138 ~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~ 180 (269)
T PLN02296 138 TVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEV 180 (269)
T ss_pred EECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeE
Confidence 9999999999999999999999999999999988877766554
No 55
>PLN02472 uncharacterized protein
Probab=99.67 E-value=1.2e-15 Score=129.13 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=98.0
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEe-----------ceEEccCCEECCCcEEecc
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLS-----------RCTVMRGVRIKKHACISSS 248 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~ 248 (302)
.+.+.+++.+.+++.|++++.|+.+++|.++ .+||++|.|+++|.|. +++|+++|.||++|.|.+|
T Consensus 65 ~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~ 144 (246)
T PLN02472 65 DAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSC 144 (246)
T ss_pred CCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCe
Confidence 4668888999999999999999999988765 7999999999999994 5899999999999999999
Q ss_pred EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+|+++|.||.++.|.++++|++++.|++++++.++..+|+..+
T Consensus 145 ~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~ 187 (246)
T PLN02472 145 TIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGEL 187 (246)
T ss_pred EEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCE
Confidence 9999999999999999999999999999999988887776554
No 56
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.66 E-value=7.5e-15 Score=126.52 Aligned_cols=101 Identities=25% Similarity=0.394 Sum_probs=53.8
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCc------EECCCCEECCCcEEe-ceEEccCCEECCCcEEe----------
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDV------AVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------- 246 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~------~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------- 246 (302)
+.+.+++.|+++++|++++.||++|+|++++ .||++|.|.+++.|. ++.||++|.|+++++|+
T Consensus 112 A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~ 191 (338)
T COG1044 112 ATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTA 191 (338)
T ss_pred CccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCcccccccc
Confidence 3344444444444444444444444444444 444444444444444 46666677766666663
Q ss_pred ----------ccEECCCCEECCCcEEccC----cEECCCcEECCceEEcCCe
Q 022113 247 ----------SSIIGWHSTVGQWARVENM----TILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 247 ----------~~~i~~~~~i~~~~~i~~~----~~i~~~~~v~~~~~v~~~~ 284 (302)
+.+|+++|.||++++|..+ ++|+++++|.+-+.|+-++
T Consensus 192 ~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~vqIaHnv 243 (338)
T COG1044 192 IGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNLVQIGHNV 243 (338)
T ss_pred CCceEcceeceEEECCceEEcccceeccccccCceecCCcEEcceeEEcccc
Confidence 3556777777777776655 5555555544444433333
No 57
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.65 E-value=7e-15 Score=124.99 Aligned_cols=148 Identities=18% Similarity=0.381 Sum_probs=113.3
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
++++. ..+.+.+||++++++|++.+.. +++|++++||++++.++.++++.|.+.+.+.++++.+. +...||.+.+|
T Consensus 71 ~~~i~-~~~~~~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~v~~d 146 (231)
T cd04183 71 NATVV-ELDGETLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS-SHPRWSYVKLD 146 (231)
T ss_pred CCEEE-EeCCCCCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC-CCCCeEEEEEC
Confidence 45553 4456789999999999998842 37899999999999999999998887777777766665 45579999998
Q ss_pred CCCCcEEEEEecCCCCCCCeEEEEEEEeCHh-hH-hhccC---C-----CCCccccchHHHHhcC-cEEEEEe-cCeeEe
Q 022113 93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPA-VL-DRIEL---R-----PTSIEKEVFPKIALEG-KLFAMVL-PGFWMD 160 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~-~l-~~l~~---~-----~~~~~~~~~~~l~~~~-~v~~~~~-~g~~~d 160 (302)
+ ++++..+.||+. .+.+.++|+|+|+++ .| +.+.. . ......+.++.+++++ ++.++.+ +++|.|
T Consensus 147 ~-~~~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~~~~~~~~~w~d 223 (231)
T cd04183 147 E-NGRVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVGIYLIDKDDYHS 223 (231)
T ss_pred C-CCCEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEEEEEeccccEEE
Confidence 6 789999998854 346789999999987 43 43321 1 1112246677778775 6999999 689999
Q ss_pred cCChHHH
Q 022113 161 IGQPRDY 167 (302)
Q Consensus 161 igt~~~~ 167 (302)
+++|++|
T Consensus 224 i~t~~dl 230 (231)
T cd04183 224 FGTPEDL 230 (231)
T ss_pred cCChHhc
Confidence 9999986
No 58
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.65 E-value=1.7e-15 Score=128.17 Aligned_cols=107 Identities=12% Similarity=0.222 Sum_probs=80.8
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECC
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGW 252 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~ 252 (302)
..++.+++.++++++|++++.|+++ .+..++.||.+|.|+.++.|. ++.|+++|+|+.++.|+ +++|++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgD 178 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 178 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECC
Confidence 3455566666666666666666553 444567778888888777776 47788888888888773 479999
Q ss_pred CCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113 253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
+|+||+++.|.++++||+++.|++|++|.+++.+-+++
T Consensus 179 nv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~ 216 (269)
T TIGR00965 179 NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE 216 (269)
T ss_pred CCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc
Confidence 99999999999999999999999999998887544433
No 59
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.64 E-value=5.5e-15 Score=117.39 Aligned_cols=109 Identities=18% Similarity=0.236 Sum_probs=97.3
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-----eEEccCCEECCCcEEeccEECCCC
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWHS 254 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~ 254 (302)
.+.+++++.|.+++.+|+++.|+++|.|.+. ++||++|.|+++|.|.. ++|++++.|++++.+.+++|++++
T Consensus 6 ~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~ 85 (154)
T cd04650 6 KAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYV 85 (154)
T ss_pred CeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCC
Confidence 4567888888889999999999999988875 69999999999999974 899999999999999999999999
Q ss_pred EECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+|+.++.+.++++|++++++++++.+.++..+|+..+
T Consensus 86 ~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v 122 (154)
T cd04650 86 IVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSL 122 (154)
T ss_pred EEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCE
Confidence 9999999999999999999999998888777666554
No 60
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.62 E-value=1.1e-14 Score=115.88 Aligned_cols=110 Identities=20% Similarity=0.312 Sum_probs=98.5
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-----eEEccCCEECCCcEEeccEECCC
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-----CTVMRGVRIKKHACISSSIIGWH 253 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~ 253 (302)
..+.+++++.|.+++.+++++.|++++.|.++ ++||++|.|++++.|.. +.|++++.|+.++.+.+++++++
T Consensus 4 ~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~ 83 (153)
T cd04645 4 PSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDN 83 (153)
T ss_pred CCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCC
Confidence 34668888999999999999999999988764 69999999999999986 69999999999999999999999
Q ss_pred CEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
+.|++++.+..+++|++++.|++++.+.+++.+|.+++
T Consensus 84 ~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~ 121 (153)
T cd04645 84 CLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSL 121 (153)
T ss_pred CEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCE
Confidence 99999999998999999999999999988877776554
No 61
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.61 E-value=2.8e-14 Score=128.12 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=47.8
Q ss_pred EECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe--------------------ccEECCCCEECCCcEEcc---
Q 022113 209 LIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS--------------------SSIIGWHSTVGQWARVEN--- 264 (302)
Q Consensus 209 ~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~~i~~--- 264 (302)
+|++++.||++|.|+++++|. ++.|+++|.|+++++|+ +++|++++.||+++.|.+
T Consensus 144 ~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~~~~~ 223 (343)
T PRK00892 144 VIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTIDRGAL 223 (343)
T ss_pred EEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEecCcc
Confidence 333333444444444444444 35567777777777773 467788888888777742
Q ss_pred -CcEECCCcEECCceEEcCCeEecCcc
Q 022113 265 -MTILGEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 265 -~~~i~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
+++||++++++..+.++.++.++.+.
T Consensus 224 ~~t~Ig~~~~i~~~v~I~~~~~IG~~~ 250 (343)
T PRK00892 224 DDTVIGEGVKIDNLVQIAHNVVIGRHT 250 (343)
T ss_pred ccceeCCCCEEeCCeEEccCCEECCCc
Confidence 35666666666665555555554443
No 62
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.60 E-value=1.3e-14 Score=102.19 Aligned_cols=79 Identities=46% Similarity=0.969 Sum_probs=72.8
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
++|++.|++++.|+++++|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++++..+++|+++++++.
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~~~ig~~~~i~~ 80 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENVTVLGDDVTIKD 80 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecCEEECCceEECC
Confidence 5788899999999999999999999999999999999999999999999999999999999999977788888887763
No 63
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.60 E-value=2.7e-14 Score=111.61 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=85.6
Q ss_pred ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe---------ccEECCCC
Q 022113 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS---------SSIIGWHS 254 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~ 254 (302)
++++++.+++++.+++++.|.+++.|..++.||+++.|+.++.|. ++.|+++|.|++++.++ ++++++++
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~ 82 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDV 82 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCC
Confidence 466777777777777777777777777777888888888888875 57888888888888885 37899999
Q ss_pred EECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 255 TVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
+|++++.|.+++.|++++.|++++++.+++.+...
T Consensus 83 ~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 83 FIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred EECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 99999999999999999999999999887766544
No 64
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=3e-14 Score=114.47 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=88.4
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
..+.+++.+.+++++++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.++++++++.|++++.+
T Consensus 6 ~~~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i 85 (163)
T cd05636 6 GTVEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYV 85 (163)
T ss_pred cccCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEE
Confidence 4577889999999999999999999999999999999999999998 699999999999999999999999999998887
Q ss_pred ccCcEECCCcEECCceEEcC
Q 022113 263 ENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 263 ~~~~~i~~~~~v~~~~~v~~ 282 (302)
.+++|++++.|++++.+..
T Consensus 86 -~~siIg~~~~I~~~~~i~~ 104 (163)
T cd05636 86 -GDSVLGENVNLGAGTITAN 104 (163)
T ss_pred -ecCEECCCCEECCCcEEcc
Confidence 5578888888888776643
No 65
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.59 E-value=1.9e-14 Score=123.96 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=21.4
Q ss_pred EEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 232 TVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 232 ~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
.|+++|.|++++.| ++|+|++++.|+.++.+..+++||+++.|+.++.+.+
T Consensus 104 ~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~ 155 (254)
T cd03351 104 RIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQ 155 (254)
T ss_pred EECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECC
Confidence 33444444444444 2344444444444444344444444444444444333
No 66
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.57 E-value=9.2e-14 Score=118.74 Aligned_cols=158 Identities=19% Similarity=0.228 Sum_probs=111.5
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHc-CCcEEEEEEeCCCCC---C
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAH-GGEASIMVTKVDEPS---K 85 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~---~ 85 (302)
+++++.+..+..++||++ +..++..+... .+.|++++||+ ++ +.++.++++.|.+. +.++++++.+.+++. .
T Consensus 61 ~~~~~~~~~~~~~~gt~~-~~~~~~~~~~~-~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (239)
T cd02517 61 FGGKVVMTSPDHPSGTDR-IAEVAEKLDAD-DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFN 138 (239)
T ss_pred cCCEEEEcCcccCchhHH-HHHHHHhcCCC-CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccC
Confidence 577777766667889986 66666666421 25799999998 44 56699999988776 677888888876555 4
Q ss_pred cce--EEEeCCCCcEEEEEecCCC-------CCCCeEEEEEEEeCHhhHhhccCCC-CCcc-ccchH--HHHhc-CcEEE
Q 022113 86 YGV--VVMEESTGKVEKFVEKPKL-------FVGNKINAGIYLLNPAVLDRIELRP-TSIE-KEVFP--KIALE-GKLFA 151 (302)
Q Consensus 86 ~g~--v~~d~~~~~v~~~~ekp~~-------~~~~~~~~Giy~~~~~~l~~l~~~~-~~~~-~~~~~--~l~~~-~~v~~ 151 (302)
++. +..++ +++++.|.++|.. +...+.++|+|+|++++|+.+.... ..+. .+.+. .+++. .++.+
T Consensus 139 ~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 217 (239)
T cd02517 139 PNVVKVVLDK-DGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKV 217 (239)
T ss_pred CCCCEEEECC-CCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEE
Confidence 444 55664 6899999876432 1357899999999999998775421 1111 11111 34444 45889
Q ss_pred EEecCeeEecCChHHHHHHHH
Q 022113 152 MVLPGFWMDIGQPRDYITGLR 172 (302)
Q Consensus 152 ~~~~g~~~digt~~~~~~a~~ 172 (302)
+..+++|.|+|+|++|.++++
T Consensus 218 ~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 218 VETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred EEeCCCCCCCCCHHHHHHHHh
Confidence 988999999999999998864
No 67
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.57 E-value=1.4e-13 Score=117.98 Aligned_cols=160 Identities=16% Similarity=0.199 Sum_probs=112.2
Q ss_pred cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeC------CC
Q 022113 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKV------DE 82 (302)
Q Consensus 11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~------~~ 82 (302)
.+++++.+..++.+.||++....+.. +.....+.+++++||+ +. ...+.++++.|.+++++.++++.+. .+
T Consensus 60 ~~~~~v~~~~~~~~~gt~~~~~~~~~-~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (245)
T PRK05450 60 AFGGEVVMTSPDHPSGTDRIAEAAAK-LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFN 138 (245)
T ss_pred HcCCEEEECCCcCCCchHHHHHHHHh-cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcC
Confidence 46788877777778899876544433 3211125688899999 55 4558899998877767777777665 34
Q ss_pred CCCcceEEEeCCCCcEEEEEecCCCC----------CCCeEEEEEEEeCHhhHhhccCCCCC-c--cc--cchHHHHhcC
Q 022113 83 PSKYGVVVMEESTGKVEKFVEKPKLF----------VGNKINAGIYLLNPAVLDRIELRPTS-I--EK--EVFPKIALEG 147 (302)
Q Consensus 83 ~~~~g~v~~d~~~~~v~~~~ekp~~~----------~~~~~~~Giy~~~~~~l~~l~~~~~~-~--~~--~~~~~l~~~~ 147 (302)
+..++++ +|+ +|+++.|.|+|... .+++.++|+|+|++++++.+...... + .. ++.+.+.++.
T Consensus 139 ~~~~~v~-~d~-~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (245)
T PRK05450 139 PNVVKVV-LDA-DGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGY 216 (245)
T ss_pred cCCCEEE-eCC-CCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCC
Confidence 5556755 775 78999999998322 24899999999999999877532111 1 11 1122233446
Q ss_pred cEEEEEecC-eeEecCChHHHHHHHHH
Q 022113 148 KLFAMVLPG-FWMDIGQPRDYITGLRL 173 (302)
Q Consensus 148 ~v~~~~~~g-~~~digt~~~~~~a~~~ 173 (302)
++.++..++ +|.|+|+|++|.+|++.
T Consensus 217 ~v~~~~~~~~~w~~i~~~~dl~~a~~~ 243 (245)
T PRK05450 217 RIHVVVVEEAPSIGVDTPEDLERVRAL 243 (245)
T ss_pred ceEEEEeCCCCCCCcCCHHHHHHHHHH
Confidence 899999986 99999999999999764
No 68
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.57 E-value=5.8e-14 Score=112.49 Aligned_cols=107 Identities=20% Similarity=0.313 Sum_probs=84.1
Q ss_pred cccccCceEec--ceEEcCCcEECCCCEECCC---cEECCCCEECCCcEEec-------------eEEccCCEECCCcEE
Q 022113 184 LKLATGANIVG--NVLVHESAQIGEGCLIGPD---VAVGPGCVVESGVRLSR-------------CTVMRGVRIKKHACI 245 (302)
Q Consensus 184 ~~~~~~~~i~~--~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i 245 (302)
..+++.+.+.+ ++.+++++.|+++|+|.++ ++||++|.|++++.|.. +.|++++.|++++.+
T Consensus 8 ~~i~~~~~i~g~~~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i 87 (161)
T cd03359 8 NKVSRKSVICGSQNIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVV 87 (161)
T ss_pred CeecchheeccCCCEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEE
Confidence 34556666644 6777777777777777664 57888888888887763 579999999999999
Q ss_pred eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCcc
Q 022113 246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
.++++++++.|++++.|+.+++|++++.+++++++.+++++|+..
T Consensus 88 ~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~ 132 (161)
T cd03359 88 NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYS 132 (161)
T ss_pred EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCC
Confidence 999999999999999988888888888888888887777665544
No 69
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.57 E-value=1.6e-13 Score=113.93 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=79.2
Q ss_pred CeeEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc
Q 022113 156 GFWMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM 234 (302)
Q Consensus 156 g~~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~ 234 (302)
..+..++.+....+....+. .........+.+.+.+.+++.+++++.|+++|+|+++++||++|.|++++.|. ++.|+
T Consensus 61 ~~iiai~~~~~~~~i~~~l~-~~g~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig 139 (201)
T TIGR03570 61 DLVVAIGDNKLRRRLFEKLK-AKGYRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIG 139 (201)
T ss_pred EEEEEcCCHHHHHHHHHHHH-hCCCcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEEC
Confidence 34556655444443333222 11122233455666666666677777777777777677777777777777765 47777
Q ss_pred cCCEECCCcEEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 235 RGVRIKKHACIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 235 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
+++.|++++.+. ++.++++++|++++.+.+++.|++++++++++++..
T Consensus 140 ~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 140 DYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEECC
Confidence 777777777775 477777777777777777777777777777766644
No 70
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.57 E-value=1.6e-13 Score=113.12 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=59.8
Q ss_pred ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEE
Q 022113 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARV 262 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 262 (302)
.+++.+.+.+++.+++++.|+++|+|++++.||++|.|++++.|. ++.|+++|.|+.++.+. +++|+++|+|+.++.+
T Consensus 86 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v 165 (197)
T cd03360 86 LIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATI 165 (197)
T ss_pred EECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEE
Confidence 344455555566666666666666666666666666666666664 45666666666666663 3666666666666666
Q ss_pred ccCcEECCCcEECCceEEcC
Q 022113 263 ENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 263 ~~~~~i~~~~~v~~~~~v~~ 282 (302)
.+++.|++++.+++++++..
T Consensus 166 ~~~~~ig~~~~v~~~~~v~~ 185 (197)
T cd03360 166 IQGVTIGAGAIIGAGAVVTK 185 (197)
T ss_pred cCCCEECCCCEECCCCEEcC
Confidence 66666666666666655543
No 71
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.56 E-value=1.8e-14 Score=125.37 Aligned_cols=154 Identities=25% Similarity=0.297 Sum_probs=110.0
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhcc-CCCCcEEEEeCCeecC--cCHHHHHHHHHH---cCCcEEEEEEeCCCCCCc
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLID-DTGEPFFVLNSDVISE--YPFAEMIEFHKA---HGGEASIMVTKVDEPSKY 86 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~-~~~~~~lv~~gD~l~~--~~l~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 86 (302)
+..+.++.|++++||++|+..|+.++.. +.++.++|++||+++. .+|.++++.+.+ .+..+|+.+.+.++...|
T Consensus 72 ~~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~~t~y 151 (274)
T cd02509 72 LPEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRPETGY 151 (274)
T ss_pred CCCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCCCCCe
Confidence 4567889999999999999999998853 2236789999999775 557666665533 567888888888777899
Q ss_pred ceEEEeCCC-C---cEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCC----------------CC---C
Q 022113 87 GVVVMEEST-G---KVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELR----------------PT---S 134 (302)
Q Consensus 87 g~v~~d~~~-~---~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~----------------~~---~ 134 (302)
|++..++.. + +|.+|.|||... ...++|+|+|+|+++.| +.++.- .. .
T Consensus 152 GyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 231 (274)
T cd02509 152 GYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYEALEKALAAAGTDDFLR 231 (274)
T ss_pred EEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHHHHHHHHHhcCCchhhh
Confidence 999998532 2 899999999743 13589999999997655 333210 00 1
Q ss_pred ccccchHH----------HHhcCcEEEEEecCeeEecCChHH
Q 022113 135 IEKEVFPK----------IALEGKLFAMVLPGFWMDIGQPRD 166 (302)
Q Consensus 135 ~~~~~~~~----------l~~~~~v~~~~~~g~~~digt~~~ 166 (302)
+..+.|.. +.+..++.+.+.+..|.|+|++.+
T Consensus 232 ~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 232 LLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred hhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 11122222 334567888888889999999764
No 72
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.56 E-value=4.1e-14 Score=99.46 Aligned_cols=79 Identities=35% Similarity=0.561 Sum_probs=70.9
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
+|++++.|++++.|.+ ++||++|.|++++.|.+++|++++.|++++.+.++++++++.|++++++.+++++++++++++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGDDVVVED 79 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECCCeEECc
Confidence 3678888899999976 999999999999999999999999999999999999999999999999977788888877763
No 73
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.56 E-value=5e-14 Score=121.60 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=26.7
Q ss_pred eEEccCCEECCCcEEec--------cEECCCCEECCCcEEccCcEECCCcEECCce
Q 022113 231 CTVMRGVRIKKHACISS--------SIIGWHSTVGQWARVENMTILGEDVHVCDEI 278 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i~~--------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~ 278 (302)
+.|+++|.|+++++|.. ++||+++.|+++++|+.+++||+++.+++++
T Consensus 81 v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~ 136 (262)
T PRK05289 81 LVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNA 136 (262)
T ss_pred EEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcc
Confidence 55666666666666643 3456666665555555555555555444443
No 74
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.56 E-value=5.1e-14 Score=121.24 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEec-----
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISS----- 247 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~----- 247 (302)
+++++.|.+++.|+++++|+++|.|+++++||++|.|++++.|. +++|+++|.|+++|+|..
T Consensus 20 I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~ 99 (254)
T cd03351 20 IGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQG 99 (254)
T ss_pred ECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCC
Confidence 33444444444444444555555555556666666666666664 467888888888888853
Q ss_pred ---cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 248 ---SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 248 ---~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
++||+++.|+++++|..++.||+++.+++++.+..+++++.+
T Consensus 100 ~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~ 144 (254)
T cd03351 100 GGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDY 144 (254)
T ss_pred CCceEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCC
Confidence 677888888877777777777776666666555544444433
No 75
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.56 E-value=4.7e-14 Score=118.78 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=87.9
Q ss_pred cEEEEEecCCCCCChHHHHHc--HhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHc-----CCcEEEEEEeCCCCCC-
Q 022113 14 IKIICSQETEPLGTAGPLALA--RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH-----GGEASIMVTKVDEPSK- 85 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a--~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~-----~~~~~l~~~~~~~~~~- 85 (302)
..+.+..+++.+|||++++.. ++.+ +++|++++||++++.|+.+++++|+++ ++++|+++.+.+++..
T Consensus 77 ~~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~ 152 (217)
T cd04197 77 MIVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRT 152 (217)
T ss_pred ceEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCcccc
Confidence 568888888899999999654 4444 268999999999999999999999874 7788888888766542
Q ss_pred -----cceEEEeCCCCcEEEEEecCCCCC--------------------CCeEEEEEEEeCHhhH
Q 022113 86 -----YGVVVMEESTGKVEKFVEKPKLFV--------------------GNKINAGIYLLNPAVL 125 (302)
Q Consensus 86 -----~g~v~~d~~~~~v~~~~ekp~~~~--------------------~~~~~~Giy~~~~~~l 125 (302)
++++.+|+.+++++.|.|||..+. +++.++|+|+|+++++
T Consensus 153 ~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 153 RRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred ccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 578888864589999999986542 6789999999999864
No 76
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.56 E-value=9.6e-14 Score=123.07 Aligned_cols=104 Identities=17% Similarity=0.258 Sum_probs=45.0
Q ss_pred eEecCChHHHHHHHHHHHHhhccccccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccC
Q 022113 158 WMDIGQPRDYITGLRLYLDSLRKKSSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRG 236 (302)
Q Consensus 158 ~~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~ 236 (302)
+.-+.+|...+.....++..... ....+++.+.|.+++.+++++.|+++|.|+++++||++|.|++++.|. ++.|+++
T Consensus 67 ~~~v~~p~~~~~~~~~~~~~~~~-~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 67 ALVVKDPYLAFAKVAELFDPPPK-REAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred EEEECCHHHHHHHHHHHhccccc-ccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 45567776655543333322111 123344444444444444444444444444444444444444444442 3444444
Q ss_pred CEECCCcEEe-ccEECCCCEECCCcEE
Q 022113 237 VRIKKHACIS-SSIIGWHSTVGQWARV 262 (302)
Q Consensus 237 ~~i~~~~~i~-~~~i~~~~~i~~~~~i 262 (302)
|.|+++++|. +++||++|.|++++.|
T Consensus 146 ~~I~~~~~I~~~~~IG~~~~I~~~~vI 172 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKNVIIHSGAVI 172 (324)
T ss_pred ceECCCcEECCCCEECCCCEECCCcEE
Confidence 4444444443 3444444444444333
No 77
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.56 E-value=1.2e-13 Score=117.27 Aligned_cols=149 Identities=23% Similarity=0.324 Sum_probs=105.0
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCC--CCcceEE
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--SKYGVVV 90 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~v~ 90 (302)
++.+.+..+.++.|++++++.+++++ . ++|++++||++++. ++++.|.+.+++.++++.+..+. ..++...
T Consensus 67 ~~~~~~~~~~~~~g~~~s~~~~~~~~-~---~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd02523 67 NIKFVYNPDYAETNNIYSLYLARDFL-D---EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDL 139 (229)
T ss_pred CeEEEeCcchhhhCcHHHHHHHHHHc-C---CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeee
Confidence 44444444445799999999999998 3 68999999999865 46677777788888888764322 2344332
Q ss_pred EeCCCCcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhccC---------CCCCccccchHHHHhcCcEEEEEec-CeeE
Q 022113 91 MEESTGKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRIEL---------RPTSIEKEVFPKIALEGKLFAMVLP-GFWM 159 (302)
Q Consensus 91 ~d~~~~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l~~---------~~~~~~~~~~~~l~~~~~v~~~~~~-g~~~ 159 (302)
.+ .++++.+.+||.... ..+.++|+|+|++++|+.+.. +......++++.++++.++.++.+. ++|.
T Consensus 140 ~~--~~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v~~~~~~~w~ 217 (229)
T cd02523 140 DD--AGVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKVKDISDGFWY 217 (229)
T ss_pred cC--ccceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeEEEcCCCCEE
Confidence 22 368999999986543 468999999999999876632 1222334667777774454444332 8999
Q ss_pred ecCChHHHHHH
Q 022113 160 DIGQPRDYITG 170 (302)
Q Consensus 160 digt~~~~~~a 170 (302)
|++++++|.+|
T Consensus 218 dI~~~ed~~~a 228 (229)
T cd02523 218 EIDDLEDLERA 228 (229)
T ss_pred EeCCHHHHHhh
Confidence 99999999876
No 78
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.56 E-value=6.1e-14 Score=120.75 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=38.6
Q ss_pred cEECCCCEECCCcEEe--------ceEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113 214 VAVGPGCVVESGVRLS--------RCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 214 ~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
++||++|.|++++.|. ++.|++++.|++++.| ++|+|++++.|++++.+..+++||+++.|+.++.+.+++
T Consensus 77 v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v 156 (254)
T TIGR01852 77 LIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFV 156 (254)
T ss_pred EEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCc
Confidence 4455555555555553 2345555555555555 345566666666666555556666655555555544444
Q ss_pred E
Q 022113 285 V 285 (302)
Q Consensus 285 v 285 (302)
.
T Consensus 157 ~ 157 (254)
T TIGR01852 157 R 157 (254)
T ss_pred E
Confidence 3
No 79
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.55 E-value=2.9e-14 Score=118.56 Aligned_cols=107 Identities=24% Similarity=0.447 Sum_probs=88.4
Q ss_pred cCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEE
Q 022113 21 ETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEK 100 (302)
Q Consensus 21 ~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~ 100 (302)
|++++|||+|+++|++++....+++|++++||++++.++.++++.|+++++++|+++.
T Consensus 89 ~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~---------------------- 146 (200)
T cd02508 89 GDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK---------------------- 146 (200)
T ss_pred CCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh----------------------
Confidence 3568999999999999985422378999999999999999999999988888876664
Q ss_pred EEecCCCCCCCeEEEEEEEeCHhhHh-hccC----CCCCccccchHHHHhcCcEEEEEecCeeEec
Q 022113 101 FVEKPKLFVGNKINAGIYLLNPAVLD-RIEL----RPTSIEKEVFPKIALEGKLFAMVLPGFWMDI 161 (302)
Q Consensus 101 ~~ekp~~~~~~~~~~Giy~~~~~~l~-~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~g~~~di 161 (302)
+++|+|+|++++|. .++. +..+...++++.+++++++.+|.++|+|.|+
T Consensus 147 ------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 147 ------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred ------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCeEecC
Confidence 68899999999984 3432 2334556888889988999999999999986
No 80
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.55 E-value=5.7e-14 Score=119.99 Aligned_cols=102 Identities=16% Similarity=0.206 Sum_probs=74.0
Q ss_pred ccCceEecceEEcCCcEECCCCEEC-----CCcEECCCCEECCCcEEec-eEEccCCEECCCcEEe---------ccEEC
Q 022113 187 ATGANIVGNVLVHESAQIGEGCLIG-----PDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIG 251 (302)
Q Consensus 187 ~~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~ 251 (302)
.+++.|.|++++++++.|+++++|. .+++|+++|.|+.++.|.+ +.|+++|+|++++.|+ +++|+
T Consensus 101 ~~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIg 180 (272)
T PRK11830 101 EAGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIE 180 (272)
T ss_pred cCCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEc
Confidence 3345555555555555555555554 3556667777777777664 5777778887777764 37899
Q ss_pred CCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 252 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
++|.||.++.|.++++||++++|++++++.+++.+.+
T Consensus 181 Dnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~ 217 (272)
T PRK11830 181 DNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYD 217 (272)
T ss_pred CCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECc
Confidence 9999999999999999999999999999888776554
No 81
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.55 E-value=6.8e-14 Score=98.85 Aligned_cols=80 Identities=25% Similarity=0.495 Sum_probs=71.8
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
+|++++.|++++.|. ++.|+++|.|++++.|.++++++++.|++++.+.++++++++.|++++++ .+++|+++++|++
T Consensus 1 ~ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v-~~~ii~~~~~i~~ 78 (81)
T cd04652 1 LVGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKL-KDCLVGSGYRVEA 78 (81)
T ss_pred CccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEE-ccCEECCCcEeCC
Confidence 367888889999886 79999999999999999999999999999999999999999999999999 6688888888877
Q ss_pred ce
Q 022113 277 EI 278 (302)
Q Consensus 277 ~~ 278 (302)
++
T Consensus 79 ~~ 80 (81)
T cd04652 79 GT 80 (81)
T ss_pred CC
Confidence 64
No 82
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.54 E-value=1.1e-13 Score=128.99 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=112.3
Q ss_pred CCcEE-EEEecCCCCCChHHHHHcHhhhcc--CCCCcEEEEeCCeecC--cCHHHHHHHH---HHcCCcEEEEEEeCCCC
Q 022113 12 LGIKI-ICSQETEPLGTAGPLALARDKLID--DTGEPFFVLNSDVISE--YPFAEMIEFH---KAHGGEASIMVTKVDEP 83 (302)
Q Consensus 12 ~g~~i-~~~~~~~~~Gt~~al~~a~~~i~~--~~~~~~lv~~gD~l~~--~~l~~~~~~~---~~~~~~~~l~~~~~~~~ 83 (302)
++.+. .|+.|+.++|||+|+..|..++.. ..++.++|++||+++. .+|.++++.+ .+.++.+|+.+.+..+.
T Consensus 70 ~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~~p~ 149 (468)
T TIGR01479 70 IGKLASNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPTHPE 149 (468)
T ss_pred cCCCcceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCCCCC
Confidence 45553 699999999999999998877732 1124588999998653 3488887764 34456777888777777
Q ss_pred CCcceEEEeC-----CCCcEEEEEecCCCCC--------CCeEEEEEEEeCH------------hhHhhccC-----CC-
Q 022113 84 SKYGVVVMEE-----STGKVEKFVEKPKLFV--------GNKINAGIYLLNP------------AVLDRIEL-----RP- 132 (302)
Q Consensus 84 ~~~g~v~~d~-----~~~~v~~~~ekp~~~~--------~~~~~~Giy~~~~------------~~l~~l~~-----~~- 132 (302)
..||++..++ +.++|..|.|||+... ..++|+|+|+|++ ++++.+.. ..
T Consensus 150 t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~~~~~~~~~ 229 (468)
T TIGR01479 150 TGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEAAVEASEPD 229 (468)
T ss_pred CCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHHHHHhccCC
Confidence 8999999873 1368999999997531 3689999999994 44433321 00
Q ss_pred ---CCccccchH---------H-HHhcCcEEEEEecCeeEecCChHHHHHHH
Q 022113 133 ---TSIEKEVFP---------K-IALEGKLFAMVLPGFWMDIGQPRDYITGL 171 (302)
Q Consensus 133 ---~~~~~~~~~---------~-l~~~~~v~~~~~~g~~~digt~~~~~~a~ 171 (302)
..+..+.|+ . +.+..++.+.+.+..|.|+|+++++++..
T Consensus 230 ~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 230 LDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred cccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 111123444 2 23345788888888999999999998864
No 83
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.53 E-value=1.5e-13 Score=118.34 Aligned_cols=101 Identities=13% Similarity=0.204 Sum_probs=52.9
Q ss_pred cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEe--------
Q 022113 188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACIS-------- 246 (302)
Q Consensus 188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~-------- 246 (302)
+.+.|.+++.|++++.|+++|.|.++++||++|.|+++++|. +++|+++|.|+++|+|.
T Consensus 21 ~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~ 100 (254)
T TIGR01852 21 PFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGG 100 (254)
T ss_pred CCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCC
Confidence 333333344444444444444444455555666666666664 35666667666666664
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
.++||+++.|+.++.|..++.||+++.+++++.+..++++++
T Consensus 101 ~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd 142 (254)
T TIGR01852 101 VTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGD 142 (254)
T ss_pred cEEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECC
Confidence 245666666655555555555555555555444444444433
No 84
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.53 E-value=1e-13 Score=97.38 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=69.4
Q ss_pred EcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 198 VHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 198 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
|+++++|+++|.|. ++.|+++|.|++++.|.++++++++.|+++++|.++++++++.|++++.++++++|++++++|+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~v~~~~~ig~ 79 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPGSLISFGVVIGD 79 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCCCEEeCCcEeCc
Confidence 67888888889886 7999999999999999999999999999999999999999999999988887888888877764
No 85
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.9e-14 Score=131.85 Aligned_cols=95 Identities=23% Similarity=0.395 Sum_probs=84.7
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEE
Q 022113 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHV 274 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v 274 (302)
+++-++.+.+.+.|.++.++.||.++.||.++.|.||+||.||+||.+++|.++.|+.+|.||++|.| ..++|+++++|
T Consensus 315 ~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I-~~aii~d~v~i 393 (673)
T KOG1461|consen 315 NIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRI-DHAIICDDVKI 393 (673)
T ss_pred ccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceE-eeeEeecCcEe
Confidence 77778889999999999999999999999999999999999999999999999999999999999999 55888888888
Q ss_pred CCceEEcCCeEecCcc
Q 022113 275 CDEIYSNGGVVLPHKE 290 (302)
Q Consensus 275 ~~~~~v~~~~v~~~~~ 290 (302)
++|+.+.+|+|++.+.
T Consensus 394 ~~~~~l~~g~vl~~~V 409 (673)
T KOG1461|consen 394 GEGAILKPGSVLGFGV 409 (673)
T ss_pred CCCcccCCCcEEeeee
Confidence 8877777766655444
No 86
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.53 E-value=7.9e-14 Score=120.27 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=64.8
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEec-cEECCCCEECCCcE
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS-SIIGWHSTVGQWAR 261 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~ 261 (302)
..+++.+.|.+++.+++++.||++++|++++.||++|.|++++.|. ++.||++|.|.+++.|.+ +.||++|.|.+++.
T Consensus 100 ~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~Gav 179 (338)
T COG1044 100 AGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAV 179 (338)
T ss_pred cccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCE
Confidence 4455555555555555555555555555555555555555555554 455566666665655543 66666666666666
Q ss_pred Ec-------------------cCcEECCCcEECCceEEcCC----eEecCcc
Q 022113 262 VE-------------------NMTILGEDVHVCDEIYSNGG----VVLPHKE 290 (302)
Q Consensus 262 i~-------------------~~~~i~~~~~v~~~~~v~~~----~v~~~~~ 290 (302)
|+ ..++|++++.||+++.|..+ ++++.++
T Consensus 180 IG~dgFg~a~~~~g~~Ki~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~ 231 (338)
T COG1044 180 IGADGFGYAGTAIGWVKIPQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGV 231 (338)
T ss_pred EccCccccccccCCceEcceeceEEECCceEEcccceeccccccCceecCCc
Confidence 54 24788888888888888777 5565443
No 87
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.52 E-value=2.1e-13 Score=112.68 Aligned_cols=91 Identities=29% Similarity=0.471 Sum_probs=58.5
Q ss_pred CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEE
Q 022113 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTIL 268 (302)
Q Consensus 189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i 268 (302)
.+.+++++.+++++.|+++|.|++++.||++|.|++++.|.++.|+++|.|++++.+.++++++++.|++++.|.+++.|
T Consensus 9 ~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~I 88 (193)
T cd03353 9 TTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVL 88 (193)
T ss_pred eEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEE
Confidence 34555666666666666666666666666666666666666666666666666666666666666666666666656666
Q ss_pred CCCcEECCceE
Q 022113 269 GEDVHVCDEIY 279 (302)
Q Consensus 269 ~~~~~v~~~~~ 279 (302)
+++++|++++.
T Consensus 89 g~~~~Ig~~~~ 99 (193)
T cd03353 89 GEGVHIGNFVE 99 (193)
T ss_pred CCCCEECCcEE
Confidence 66665555443
No 88
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.52 E-value=1.4e-13 Score=118.71 Aligned_cols=60 Identities=32% Similarity=0.497 Sum_probs=26.6
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEE
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACI 245 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 245 (302)
+++.+.|++.+.|++++.|+++|.|+++++||++|.|++++.|. ++.|+++|.|++++.|
T Consensus 5 I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I 65 (262)
T PRK05289 5 IHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASI 65 (262)
T ss_pred cCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEccccee
Confidence 34444444444444444444444444444444444444444444 3444444444444444
No 89
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.51 E-value=1.8e-13 Score=121.32 Aligned_cols=77 Identities=27% Similarity=0.399 Sum_probs=41.6
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe------------------
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS------------------ 246 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~------------------ 246 (302)
+.+++.|++++.|++++.|+++|.|+++++||++|.|++++.|. +++|+++|.|+++|+|+
T Consensus 112 I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~ 191 (324)
T TIGR01853 112 IGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIP 191 (324)
T ss_pred ECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecC
Confidence 33334444444444444444444444455555555555555555 56666666666666663
Q ss_pred ---ccEECCCCEECCCcEE
Q 022113 247 ---SSIIGWHSTVGQWARV 262 (302)
Q Consensus 247 ---~~~i~~~~~i~~~~~i 262 (302)
.++|++++.||++++|
T Consensus 192 ~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 192 QIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred ccceEEECCCcEECCCCEE
Confidence 2556666666666555
No 90
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.51 E-value=1.7e-13 Score=104.15 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=67.9
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 263 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 263 (302)
..+.+++.|++++.|+++++|++++.|+++++||++|.|++++.+.++.+.. ..+..++.+++++++++++|++++.+.
T Consensus 5 ~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~-~~~~~~~~~~~~~Ig~~~~Ig~~~~v~ 83 (119)
T cd03358 5 CIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR-SKIYRKWELKGTTVKRGASIGANATIL 83 (119)
T ss_pred CEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc-cccccccccCCcEECCCcEECcCCEEe
Confidence 3455556666666666666666666666666666666666666665543333 333446678889999999999999998
Q ss_pred cCcEECCCcEECCceEEcC
Q 022113 264 NMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 264 ~~~~i~~~~~v~~~~~v~~ 282 (302)
+++.|++++.|++++.+..
T Consensus 84 ~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 84 PGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred CCcEECCCCEEccCCEEeC
Confidence 8888888888888877754
No 91
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.50 E-value=7.7e-13 Score=106.63 Aligned_cols=99 Identities=18% Similarity=0.320 Sum_probs=80.1
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECC----CcEECCCCEECCCcEEe-----ceEEccCCEECCCcEEec-cEEC
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGP----DVAVGPGCVVESGVRLS-----RCTVMRGVRIKKHACISS-SIIG 251 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~-~~i~ 251 (302)
..+.+++++.+.+++.+++++.|+++|.|+. +++||++|.|++++.|. ++.|++++.|++++.+.+ ++|+
T Consensus 7 ~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig 86 (167)
T cd00710 7 PSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIG 86 (167)
T ss_pred CCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEEC
Confidence 3456777777777788888888888888765 36889999999999884 578999999999999965 8999
Q ss_pred CCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113 252 WHSTVGQWARVENMTILGEDVHVCDEIYSN 281 (302)
Q Consensus 252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~ 281 (302)
++++|+.++.|. ++.||+++.|++++.+.
T Consensus 87 ~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 87 DNCFIGFRSVVF-NAKVGDNCVIGHNAVVD 115 (167)
T ss_pred CCCEECCCCEEE-CCEECCCCEEcCCCEEe
Confidence 999999998884 57888888888877764
No 92
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.50 E-value=3.2e-13 Score=115.66 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=8.2
Q ss_pred eEEccCCEECCCcEE
Q 022113 231 CTVMRGVRIKKHACI 245 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i 245 (302)
..|++++.|+++++|
T Consensus 78 v~IG~~~~I~e~vtI 92 (255)
T PRK12461 78 LEIGDRNVIREGVTI 92 (255)
T ss_pred eEECCceEECCccEE
Confidence 345555555555555
No 93
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.49 E-value=8.2e-13 Score=101.42 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=64.8
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-----c----cEECCCCE
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-----S----SIIGWHST 255 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-----~----~~i~~~~~ 255 (302)
+.+++.|...+.|++++.|.++++|..++.||++|.|.. +|. +++|+++|.|++++.|. . ..||++++
T Consensus 4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~--~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~ 81 (147)
T cd04649 4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEG--RISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCL 81 (147)
T ss_pred ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECC--cccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCE
Confidence 445555555555555555555555555555555555541 121 35667777777766663 3 67889999
Q ss_pred ECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 256 VGQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
||+++.| ++.||+++.|++|+++..++.+
T Consensus 82 IG~ga~I--gv~IG~~~vIGaGsvV~k~t~i 110 (147)
T cd04649 82 LGANSGI--GISLGDNCIVEAGLYVTAGTKV 110 (147)
T ss_pred ECCCCEE--eEEECCCCEECCCCEEeCCeEE
Confidence 9999988 5899999999999988888864
No 94
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.49 E-value=4.2e-13 Score=120.48 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=26.4
Q ss_pred cceEEEeCCC-CcEEEEEecCCCCC-CCeEEEEEEEeCHhhHhhc
Q 022113 86 YGVVVMEEST-GKVEKFVEKPKLFV-GNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 86 ~g~v~~d~~~-~~v~~~~ekp~~~~-~~~~~~Giy~~~~~~l~~l 128 (302)
+|+..++++. +.+ .|.++|+... .....++.+++++++.+.+
T Consensus 25 ~gva~l~~a~~~~L-sFl~~~k~~~~l~~~~A~a~Iv~~d~~~~~ 68 (343)
T PRK00892 25 TGVASLEEAGPGQI-SFLANPKYRKQLATTKAGAVIVSPDDAEFV 68 (343)
T ss_pred EeecccccCCCCeE-EEEcCchhHHHHhccCCeEEEechhhhhhc
Confidence 4555565433 455 5888876532 3456789999998765444
No 95
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.49 E-value=7.1e-13 Score=103.59 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=19.4
Q ss_pred ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 228 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 228 (302)
.+.+++.|.+.+++++++.||+++.|.++++|++++.||++|.|
T Consensus 15 ~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I 58 (139)
T cd03350 15 FIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHL 58 (139)
T ss_pred EECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEE
Confidence 34444444444444444444444444444444444444444444
No 96
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.48 E-value=2.8e-13 Score=110.68 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=86.5
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-------------------ceEEccCCEECCC
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-------------------RCTVMRGVRIKKH 242 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------------~~~i~~~~~i~~~ 242 (302)
..+.+.+++.|+|.++|+++++|+++++|+++++|...|.||.+++|. ..+||++|.|+++
T Consensus 14 ~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG~~n~IRE~ 93 (260)
T COG1043 14 PGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIGDNNTIREF 93 (260)
T ss_pred CCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEECCCCeEeeE
Confidence 345666667777777777777777777777777777777777777662 4578888999988
Q ss_pred cEEe--------ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCccc
Q 022113 243 ACIS--------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 243 ~~i~--------~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~~~ 291 (302)
++|. -+.||++..+-+|++|..+|+||++|.+..++.++..+.+++..+
T Consensus 94 vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~ai 150 (260)
T COG1043 94 VTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAI 150 (260)
T ss_pred EEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEE
Confidence 8883 277999999999999999999999999999999888887776654
No 97
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.48 E-value=1e-12 Score=108.28 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=94.4
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEEc
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVE 263 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 263 (302)
+.....+++.+.+++++.++++|.|+++++|++++.||+++.|. +++|++++.|+++|.++ ++++..++.|+++++|+
T Consensus 81 ~~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 160 (197)
T cd03360 81 YRFATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIG 160 (197)
T ss_pred CccceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEEC
Confidence 44457788899999999999999999999999999999999996 89999999999999994 68999999999999999
Q ss_pred cCcEECCCcEECCceEEcCCeEecCc
Q 022113 264 NMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 264 ~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
.++.|.++++|++++.+++++++...
T Consensus 161 ~~~~v~~~~~ig~~~~v~~~~~v~~~ 186 (197)
T cd03360 161 AGATIIQGVTIGAGAIIGAGAVVTKD 186 (197)
T ss_pred CCCEEcCCCEECCCCEECCCCEEcCC
Confidence 99999999999999999999987654
No 98
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.48 E-value=4.2e-13 Score=114.93 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=44.7
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-------------ccEEC
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-------------SSIIG 251 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~ 251 (302)
+++.+.|++++.+++++.|+++|.|++++.||++|+|++++.|. ++.|+++|.|++++.|+ ..+||
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG 81 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIG 81 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEEC
Confidence 44555566666666666666666666666666666666666665 45666666666665554 24455
Q ss_pred CCCEECCCcEE
Q 022113 252 WHSTVGQWARV 262 (302)
Q Consensus 252 ~~~~i~~~~~i 262 (302)
+++.|+++++|
T Consensus 82 ~~~~I~e~vtI 92 (255)
T PRK12461 82 DRNVIREGVTI 92 (255)
T ss_pred CceEECCccEE
Confidence 55555555544
No 99
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.48 E-value=1.1e-12 Score=111.32 Aligned_cols=151 Identities=21% Similarity=0.357 Sum_probs=114.0
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
..++++.++...|+++++++|++++..+ .++|++++||. +.+.++.++++.|.+.+.++++...+..++..||.+..
T Consensus 62 ~~~~~~~~~~~~g~~~ai~~a~~~~~~~-~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 140 (229)
T cd02540 62 PNVEFVLQEEQLGTGHAVKQALPALKDF-EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELEDPTGYGRIIR 140 (229)
T ss_pred CCcEEEECCCCCCCHHHHHHHHHhhccC-CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCCCCCccEEEE
Confidence 3466777888899999999999998531 36899999998 33567999999998877778888888778888998877
Q ss_pred eCCCCcEEEEEecCCCCC----CCeEEEEEEEeCHhhH-hhccCC------CCCccccchHHHHhcC-cEEEEEecCe--
Q 022113 92 EESTGKVEKFVEKPKLFV----GNKINAGIYLLNPAVL-DRIELR------PTSIEKEVFPKIALEG-KLFAMVLPGF-- 157 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~~~----~~~~~~Giy~~~~~~l-~~l~~~------~~~~~~~~~~~l~~~~-~v~~~~~~g~-- 157 (302)
++ ++++..+.|+|.... ..++++|+|+|+++.| +.++.. ......+.++.+++.+ ++.++.++|+
T Consensus 141 ~~-~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~v~~~~~~~~~~ 219 (229)
T cd02540 141 DG-NGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLKVAAVLADDEEE 219 (229)
T ss_pred cC-CCCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCEEEEEEcCCcce
Confidence 75 689999999875321 2688999999998755 445421 1112345677777664 6899999875
Q ss_pred eEecCChHH
Q 022113 158 WMDIGQPRD 166 (302)
Q Consensus 158 ~~digt~~~ 166 (302)
|+.+++|.+
T Consensus 220 ~~~~~~~~~ 228 (229)
T cd02540 220 VLGVNDRVQ 228 (229)
T ss_pred EecCCChHh
Confidence 688889876
No 100
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.48 E-value=8.3e-13 Score=109.51 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=73.9
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe----------------
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS---------------- 246 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---------------- 246 (302)
...+++++.+. ++.|++++.|+++|.|. +++||++|.|++++.|.++.||++|.|++++.+.
T Consensus 8 ~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~ 85 (204)
T TIGR03308 8 EPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTY 85 (204)
T ss_pred CCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccc
Confidence 34678888886 47899999999999995 8999999999999999999999999999998884
Q ss_pred ----------------------ccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113 247 ----------------------SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 281 (302)
Q Consensus 247 ----------------------~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~ 281 (302)
+++|+++++||.++.|.+++.||+++.|++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~ 142 (204)
T TIGR03308 86 RAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVT 142 (204)
T ss_pred ccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEEC
Confidence 34455555555555555555555555555555533
No 101
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.47 E-value=7.2e-13 Score=112.26 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=49.0
Q ss_pred ccccccCceEecceE-----EcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEc--------cCCEECCCcEEec-
Q 022113 183 SLKLATGANIVGNVL-----VHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVM--------RGVRIKKHACISS- 247 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~-----i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~--------~~~~i~~~~~i~~- 247 (302)
.+.+.+++.|++++. +..++.||++|.|.++++||++|.||++|.|. ++.|+ +++.|+++|.|+.
T Consensus 106 ~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDnv~IGa~ 185 (269)
T TIGR00965 106 GAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGAR 185 (269)
T ss_pred CcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCCCEECCC
Confidence 344444444444443 33446677777777667777777777777665 23332 3344444444432
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
++|.+++.|+.++.|+.+++|+++++|.+
T Consensus 186 a~I~~GV~IG~gavIGaGavI~~~~~I~~ 214 (269)
T TIGR00965 186 SEIVEGVIVEEGSVISMGVFIGQSTKIYD 214 (269)
T ss_pred CEEcCCCEECCCCEEeCCCEECCCCEEec
Confidence 44444444554444444444444444444
No 102
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.46 E-value=1.6e-12 Score=108.56 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=10.0
Q ss_pred CcEECCCcEECCceEEcCCeEec
Q 022113 265 MTILGEDVHVCDEIYSNGGVVLP 287 (302)
Q Consensus 265 ~~~i~~~~~v~~~~~v~~~~v~~ 287 (302)
++.|++++.|+.++.+.+++.++
T Consensus 150 ~~~Ig~~~~ig~~~~v~~~~~ig 172 (205)
T cd03352 150 STTIGDNVIIGGQVGIAGHLTIG 172 (205)
T ss_pred ccEECCCeEEcCCCEEeCCcEEC
Confidence 34444444444444444444333
No 103
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.45 E-value=2.3e-12 Score=106.89 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=83.8
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-ccEECCCCEECCCcEEc
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARVE 263 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 263 (302)
+...+.+.+.+.+++++.||+++.|+++++|++++.||++|.|. +++|++++.|++++.++ ++.++.++.|+++++|+
T Consensus 84 ~~~~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig 163 (201)
T TIGR03570 84 YRFATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIG 163 (201)
T ss_pred CcceEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEEC
Confidence 44456677888888888888888888888888888998888886 78888888888888885 57778888888888888
Q ss_pred cCcEECCCcEECCceEEcCCeEecC
Q 022113 264 NMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 264 ~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
.++.+.+++.+++++.+++++++..
T Consensus 164 ~~~~v~~~~~i~~~~~i~~~~~v~~ 188 (201)
T TIGR03570 164 AGATIIQGVTIGAGAIVGAGAVVTK 188 (201)
T ss_pred CCCEEeCCCEECCCCEECCCCEECC
Confidence 8888888888888888887777644
No 104
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.45 E-value=1.3e-12 Score=104.08 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=8.1
Q ss_pred CCCCEECCCcEEeceEEccCCEE
Q 022113 217 GPGCVVESGVRLSRCTVMRGVRI 239 (302)
Q Consensus 217 g~~~~i~~~~~i~~~~i~~~~~i 239 (302)
+++|.|+.++.+.+++|+++|.|
T Consensus 65 g~~~~Ig~~~~i~~~~Ig~~~~I 87 (155)
T cd04745 65 EENGHIGHGAILHGCTIGRNALV 87 (155)
T ss_pred cCCCEECCCcEEECCEECCCCEE
Confidence 33333333333333333333333
No 105
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.43 E-value=5.1e-12 Score=107.91 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=108.4
Q ss_pred cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCC-cEEEEEEeCCC-----
Q 022113 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGG-EASIMVTKVDE----- 82 (302)
Q Consensus 11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~-~~~l~~~~~~~----- 82 (302)
.+++++.+..+..+.||++ +..++..+. .+.|++++||. +.+.++.++++.|.+.+. ++++++.+.+.
T Consensus 61 ~~~~~v~~~~~~~~~g~~~-~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (238)
T PRK13368 61 AFGGKVVMTSDDHLSGTDR-LAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFE 136 (238)
T ss_pred HcCCeEEecCccCCCccHH-HHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhc
Confidence 4688887777777889984 777777763 26899999997 556779999998876543 55555654432
Q ss_pred -CCCcceEEEeCCCCcEEEEEecCCC------CCCCeEEEEEEEeCHhhHhhccCCC-CC---ccc-cchHHHH-hcCcE
Q 022113 83 -PSKYGVVVMEESTGKVEKFVEKPKL------FVGNKINAGIYLLNPAVLDRIELRP-TS---IEK-EVFPKIA-LEGKL 149 (302)
Q Consensus 83 -~~~~g~v~~d~~~~~v~~~~ekp~~------~~~~~~~~Giy~~~~~~l~~l~~~~-~~---~~~-~~~~~l~-~~~~v 149 (302)
+..+++ .+++ +|+++.|.|+|.. ....+.++|+|+|++++|..++... .. +.. +++ .++ ...++
T Consensus 137 ~p~~~~~-~~~~-~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~g~~v 213 (238)
T PRK13368 137 SPNVVKV-VVDK-NGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQL-RALEHGEKI 213 (238)
T ss_pred CcCCCEE-EECC-CCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHH-HHHHCCCce
Confidence 444554 4443 6899999875421 1134789999999999998875311 11 111 334 444 44569
Q ss_pred EEEEecCeeEecCChHHHHHHHH
Q 022113 150 FAMVLPGFWMDIGQPRDYITGLR 172 (302)
Q Consensus 150 ~~~~~~g~~~digt~~~~~~a~~ 172 (302)
.++..+++|+||++|++|..++.
T Consensus 214 ~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 214 RMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHH
Confidence 99988999999999999998865
No 106
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.43 E-value=3.5e-12 Score=105.43 Aligned_cols=60 Identities=22% Similarity=0.482 Sum_probs=30.6
Q ss_pred ccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI 245 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i 245 (302)
.+++++.|.+++.|++++.|+++|.|+ ++.|+++|.|++++.|.++++++++.|++++.|
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I 82 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHL 82 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEE
Confidence 344444444444444444444444443 225556666666555555555555555555554
No 107
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.41 E-value=2.5e-12 Score=105.41 Aligned_cols=62 Identities=21% Similarity=0.335 Sum_probs=29.4
Q ss_pred CcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEE-----eccEECCCCEECCCcEE
Q 022113 201 SAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACI-----SSSIIGWHSTVGQWARV 262 (302)
Q Consensus 201 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i 262 (302)
++.|++++.|.++++||++|.|+++|.|. ..+|+++|.|+++|+| .+++|++++.|++++.|
T Consensus 14 ~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I 84 (192)
T TIGR02287 14 EAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAIL 84 (192)
T ss_pred CcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEE
Confidence 33333333333344444444444444443 3455555555555555 23555555555554443
No 108
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.40 E-value=2.6e-12 Score=108.46 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=10.8
Q ss_pred ECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113 256 VGQWARVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
|+.+++|+.+++|.++++|++++++++++
T Consensus 163 IGd~v~IG~gsvI~~g~~Ig~~~~Igags 191 (231)
T TIGR03532 163 IEDNVLIGANAVILEGVRVGKGAVVAAGA 191 (231)
T ss_pred ECCCcEECCCCEEcCCCEECCCCEECCCC
Confidence 33333333333333333333333333333
No 109
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.40 E-value=3.5e-12 Score=104.93 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=44.0
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccCcEEC
Q 022113 199 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMTILG 269 (302)
Q Consensus 199 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~i~ 269 (302)
++++.|++++.|.++++||++|.|+++++|. .++|+++|.|+++|+|+ +++|++++.|++++.+ .+++||
T Consensus 14 ~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i-~g~vIG 92 (196)
T PRK13627 14 HPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAIL-HGCVIG 92 (196)
T ss_pred CCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEE-eeEEEC
Confidence 3334444444444444444444444444443 24566666666666663 3667777777666554 334455
Q ss_pred CCcEECCceEEcCCeE
Q 022113 270 EDVHVCDEIYSNGGVV 285 (302)
Q Consensus 270 ~~~~v~~~~~v~~~~v 285 (302)
+++.||.++.+.++++
T Consensus 93 ~~v~IG~ga~V~~g~~ 108 (196)
T PRK13627 93 RDALVGMNSVIMDGAV 108 (196)
T ss_pred CCCEECcCCccCCCcE
Confidence 5554444444333333
No 110
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.39 E-value=4.1e-12 Score=105.35 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=54.9
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 263 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 263 (302)
.+++++.|+++|.|. ++.||+++.|+++|.|.++.||+++.|++++.+.+++||++|.|+++++|.
T Consensus 4 ~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~ 69 (204)
T TIGR03308 4 LLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRIN 69 (204)
T ss_pred ccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEEC
Confidence 356777788888884 588888999999999999999999999999998888888888888887764
No 111
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.39 E-value=3e-12 Score=94.78 Aligned_cols=79 Identities=23% Similarity=0.428 Sum_probs=58.3
Q ss_pred cEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113 202 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 281 (302)
Q Consensus 202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~ 281 (302)
+.|++++.| .+++||++|.|+ ++.|.+|+++++|.|++++.|.+|++++++.|+.++.+ .+++|+++++|++++.+.
T Consensus 2 ~~i~~~~~i-~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i-~~siig~~~~Ig~~~~v~ 78 (104)
T cd04651 2 PYIGRRGEV-KNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVI-RRAIIDKNVVIPDGVVIG 78 (104)
T ss_pred ceecCCCEE-EeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEE-EeEEECCCCEECCCCEEC
Confidence 345666666 357777777777 77777777788888887788877778888888877777 567777777777777776
Q ss_pred CC
Q 022113 282 GG 283 (302)
Q Consensus 282 ~~ 283 (302)
+.
T Consensus 79 ~~ 80 (104)
T cd04651 79 GD 80 (104)
T ss_pred CC
Confidence 55
No 112
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.39 E-value=4.6e-12 Score=101.64 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=10.6
Q ss_pred CCEECCCcEEeceEEccCCEECCCcEE
Q 022113 219 GCVVESGVRLSRCTVMRGVRIKKHACI 245 (302)
Q Consensus 219 ~~~i~~~~~i~~~~i~~~~~i~~~~~i 245 (302)
++.|+.++.|.+++|+++|.|+.++.|
T Consensus 72 ~~~i~~~~~i~~~~IGd~~~Ig~~a~I 98 (164)
T cd04646 72 NNVFEVGCKCEALKIGNNNVFESKSFV 98 (164)
T ss_pred CCEECCCcEEEeeEECCCCEEeCCCEE
Confidence 333333333334444444444443333
No 113
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.39 E-value=4.6e-12 Score=108.38 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=69.3
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCE-ECCCcE---Ee-ceEEccCCEECCCcEE-----ec----cEEC
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCV-VESGVR---LS-RCTVMRGVRIKKHACI-----SS----SIIG 251 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i-----~~----~~i~ 251 (302)
+++++.|.+.+.|.+++.||+||+|.++++|+.++. +|+.+. |. .++|+++|.||.+|.| ++ +.||
T Consensus 175 vp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IG 254 (341)
T TIGR03536 175 VPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVG 254 (341)
T ss_pred ccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEEC
Confidence 344555555666666666666666666666666666 554444 33 4666666666666666 34 6788
Q ss_pred CCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 252 WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 252 ~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
++|.||.++.| +..||++|+|++|++|.+++.+
T Consensus 255 e~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 255 EGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred CCcEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 89999999998 7899999999999999998863
No 114
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.37 E-value=6.6e-12 Score=95.38 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=64.7
Q ss_pred cCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEE----------CCCCEECCCcEEccCcE
Q 022113 199 HESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSII----------GWHSTVGQWARVENMTI 267 (302)
Q Consensus 199 ~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i----------~~~~~i~~~~~i~~~~~ 267 (302)
++++.|++++.|+++++||++|.|++++.|. ++.|+++|.|++++.+.++.+ ..++.|++++.|+.+++
T Consensus 2 g~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~ 81 (119)
T cd03358 2 GDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANAT 81 (119)
T ss_pred CCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCE
Confidence 4556666666666666666666666666664 567777777777777755332 45678888898888888
Q ss_pred ECCCcEECCceEEcCCeEecC
Q 022113 268 LGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 268 i~~~~~v~~~~~v~~~~v~~~ 288 (302)
+.+++++++++.+++++++..
T Consensus 82 v~~~~~ig~~~~i~~~~~v~~ 102 (119)
T cd03358 82 ILPGVTIGEYALVGAGAVVTK 102 (119)
T ss_pred EeCCcEECCCCEEccCCEEeC
Confidence 888888999988888887754
No 115
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.36 E-value=1.9e-11 Score=89.80 Aligned_cols=84 Identities=23% Similarity=0.236 Sum_probs=62.3
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113 194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
+++.+++++.|++++.|.+.++||+++.|++++.|. ++.|+++|.|+. .+.+|++++++.++.++.|+ +++||+++
T Consensus 10 g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg-~siIg~~v 86 (101)
T cd05635 10 GPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLG-HSYLGSWC 86 (101)
T ss_pred CCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEe-eeEECCCC
Confidence 467777888888888887778888888888888777 477777777764 56777777777777777774 57777777
Q ss_pred EECCceEE
Q 022113 273 HVCDEIYS 280 (302)
Q Consensus 273 ~v~~~~~v 280 (302)
.|++++..
T Consensus 87 ~ig~~~~~ 94 (101)
T cd05635 87 NLGAGTNN 94 (101)
T ss_pred EECCCcee
Confidence 77766544
No 116
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.36 E-value=1.6e-11 Score=102.51 Aligned_cols=59 Identities=31% Similarity=0.536 Sum_probs=25.2
Q ss_pred ccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEE
Q 022113 187 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACI 245 (302)
Q Consensus 187 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 245 (302)
++++.|.+++.|++++.|+++|.|+++++||++|.|++++.|.+ +.|+++|.|+++++|
T Consensus 11 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 11 GPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 33333333333444444444444444444444444444444442 444444444444444
No 117
>PLN02296 carbonate dehydratase
Probab=99.35 E-value=1.1e-11 Score=106.65 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=58.8
Q ss_pred ccccCceEecceEEcCCcEECCCCEECCCcEECCCC---EECCCcEEe-ceEEc----------cCCEECCCcEEec-cE
Q 022113 185 KLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC---VVESGVRLS-RCTVM----------RGVRIKKHACISS-SI 249 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~---~i~~~~~i~-~~~i~----------~~~~i~~~~~i~~-~~ 249 (302)
.+++++.|.+++.+..++.||++|.|.++++|...+ .||++|.|. +++|. .++.||++++|+. |+
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 455556665555555555556666665555555443 555555555 34443 3455555555543 33
Q ss_pred ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
+ .+|.|++++.|+.+++|.++++|+++++|+++++++..
T Consensus 134 I-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~ 172 (269)
T PLN02296 134 L-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQN 172 (269)
T ss_pred e-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecC
Confidence 3 44556666666666666666666666666666665544
No 118
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.35 E-value=1e-11 Score=98.67 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=9.6
Q ss_pred CCCCEECCCcEEeceEEccCCEECCC
Q 022113 217 GPGCVVESGVRLSRCTVMRGVRIKKH 242 (302)
Q Consensus 217 g~~~~i~~~~~i~~~~i~~~~~i~~~ 242 (302)
++++.|++++.+.+++|+++|.|+.+
T Consensus 65 g~~~~I~~~~~i~~~~Ig~~~~Ig~~ 90 (154)
T cd04650 65 GDYVTIGHNAVVHGAKVGNYVIVGMG 90 (154)
T ss_pred CCCCEECCCcEEECcEECCCCEEcCC
Confidence 33333333333333333333333333
No 119
>PRK10502 putative acyl transferase; Provisional
Probab=99.35 E-value=8.1e-12 Score=101.99 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=53.6
Q ss_pred cEECCCCEECCCcEEe---ceEEccCCEECCCcEE----------------eccEECCCCEECCCcEEccCcEECCCcEE
Q 022113 214 VAVGPGCVVESGVRLS---RCTVMRGVRIKKHACI----------------SSSIIGWHSTVGQWARVENMTILGEDVHV 274 (302)
Q Consensus 214 ~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i----------------~~~~i~~~~~i~~~~~i~~~~~i~~~~~v 274 (302)
..||++|.|++++.|. .+.|+++|.|++++.| ...+||++|+||+++.|.+++.||+++.|
T Consensus 72 ~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vI 151 (182)
T PRK10502 72 LTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCWLAADVFVAPGVTIGSGAVV 151 (182)
T ss_pred EEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcEEcCCCEEcCCCEECCCCEE
Confidence 3444444444444443 3456666666666555 23578999999999999889999999999
Q ss_pred CCceEE----cCCeE---ecCcccccc
Q 022113 275 CDEIYS----NGGVV---LPHKEIKSS 294 (302)
Q Consensus 275 ~~~~~v----~~~~v---~~~~~~~~~ 294 (302)
++++++ .++++ .|++.++..
T Consensus 152 ga~svV~~~v~~~~v~~G~Pa~~ik~r 178 (182)
T PRK10502 152 GARSSVFKSLPANTICRGNPAVPIRPR 178 (182)
T ss_pred CCCCEEecccCCCcEEECCcceEeccc
Confidence 988884 34444 466665544
No 120
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.34 E-value=1e-11 Score=87.15 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=63.8
Q ss_pred EECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 215 AVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 215 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
+||+++.|++++.|.++.|+++|.|++++.|.++++++++.|+++++|. +++|+++++|++++.+.+++++.++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~v~~~ 74 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPPGSLISFG 74 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECCCCEEeCC
Confidence 3677888888888888899999999999999999999999999999994 7889999999988888888877654
No 121
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.33 E-value=6.2e-12 Score=104.92 Aligned_cols=103 Identities=17% Similarity=0.279 Sum_probs=91.7
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEe---------ccEECCC
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACIS---------SSIIGWH 253 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~ 253 (302)
.++.|++.|+-.++|++|++|++.++|.=++.++.+|+|.-++++.. ..||.||+||.++.|. .++|+++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~Igdn 188 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDN 188 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCc
Confidence 67888899998999999988888888877889999999998888874 6799999999999984 3789999
Q ss_pred CEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 254 STVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 254 ~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
|.||+++.+..++.+|++|+|++|++|.+++.+
T Consensus 189 cliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 189 CLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred cEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 999999998899999999999999999999853
No 122
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.33 E-value=1.5e-11 Score=97.75 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=14.3
Q ss_pred EEccCCEECCCcEEec-----cEECCCCEECCCcEE
Q 022113 232 TVMRGVRIKKHACISS-----SIIGWHSTVGQWARV 262 (302)
Q Consensus 232 ~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i 262 (302)
+|+++|.|+++++|.. ++|++++.|+.++.+
T Consensus 40 ~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i 75 (153)
T cd04645 40 RIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVL 75 (153)
T ss_pred EECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEE
Confidence 4444444444444433 244444444444443
No 123
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.33 E-value=4.4e-11 Score=96.41 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=77.4
Q ss_pred cccccCceEec----ceEEcCCcEECCCCEE----CCCcEECCCCEECCCcEEec-eEEccCCEECCCcEEeccEECCCC
Q 022113 184 LKLATGANIVG----NVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHS 254 (302)
Q Consensus 184 ~~~~~~~~i~~----~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~ 254 (302)
..+.+++.|.. .+.|++++.|++++.| +..+.||+++.|++++.|.. +.|+++|.|+.++.|.++.|++++
T Consensus 27 ~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~ 106 (167)
T cd00710 27 VFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNC 106 (167)
T ss_pred cEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECCCC
Confidence 34445555543 2456666666666666 33567788888888888884 999999999999999999999999
Q ss_pred EECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113 255 TVGQWARVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 255 ~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
.|++++.| .++.|++++.+++++++..+.
T Consensus 107 ~Ig~~s~i-~~~~i~~~~~v~~~~~v~~~~ 135 (167)
T cd00710 107 VIGHNAVV-DGVEIPPGRYVPAGAVITSQT 135 (167)
T ss_pred EEcCCCEE-eCCEeCCCCEECCCCEEcCCC
Confidence 99999999 568888888888888877655
No 124
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.32 E-value=2.9e-11 Score=103.45 Aligned_cols=86 Identities=17% Similarity=0.179 Sum_probs=42.4
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEec---------------eEEccCCEECCCcEE-ec
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSR---------------CTVMRGVRIKKHACI-SS 247 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~---------------~~i~~~~~i~~~~~i-~~ 247 (302)
+.+.+++.|.| .+++.++.|+++|.|++++.||++|.||++|.|.. ++|+++|.||.+|.| .+
T Consensus 116 a~Ig~gavI~p-~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgDnv~IGa~s~I~~G 194 (272)
T PRK11830 116 AYIAPNVVLMP-SYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEG 194 (272)
T ss_pred CEECCCcEEEE-EEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcCCCEECCCCEEcCC
Confidence 34445555442 34445555666666655555555555555555542 445555555555444 23
Q ss_pred cEECCCCEECCCcEEccCcEECC
Q 022113 248 SIIGWHSTVGQWARVENMTILGE 270 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~ 270 (302)
++||+++.|++++.|.+++.|++
T Consensus 195 v~IGdgavIgag~vV~~gt~I~~ 217 (272)
T PRK11830 195 VIVEEGSVLGMGVFLGQSTKIYD 217 (272)
T ss_pred CEECCCCEEcCCCEEcCCeEECc
Confidence 44444444444444444444443
No 125
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.32 E-value=1.9e-11 Score=85.81 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=55.6
Q ss_pred ECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 216 VGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 216 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
||+++.|++++.|.+++|+++|.|++++.|.++++++++.|++++++ .+++|++++.|++++.+.++++++..
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i-~~svv~~~~~i~~~~~i~~~~~ig~~ 74 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVI-VDSIIGDNAVIGENVRVVNLCIIGDD 74 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEE-ECCEECCCCEECCCCEEcCCeEECCC
Confidence 56677777777777777888888888888888888888888888888 45777788877777777666666543
No 126
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.32 E-value=2.1e-11 Score=113.73 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=62.9
Q ss_pred eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe-ccEECCCCEECCCcEE
Q 022113 191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-SSIIGWHSTVGQWARV 262 (302)
Q Consensus 191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 262 (302)
.+++.+.|++++.|+++++|++++.||++|.|++++.|.+++|+++|.|++++.|. +++||++|.||+++.+
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i 336 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEV 336 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEE
Confidence 45667788888888888888888888888888888888899999999999999997 7999999999998876
No 127
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.31 E-value=2.1e-11 Score=89.54 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=65.0
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
.+.+.+++.+.+++++++++.|+++|.|+++++||++|.|+. .|.+|+|++++.++++++|++++|++++.|++++.+
T Consensus 17 ~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~ 94 (101)
T cd05635 17 DAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNN 94 (101)
T ss_pred CCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCcee
Confidence 355667777777888888888888888888888888888875 577899999999999999999999999999988876
No 128
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.31 E-value=1.6e-11 Score=114.58 Aligned_cols=59 Identities=17% Similarity=0.415 Sum_probs=26.4
Q ss_pred cEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCc
Q 022113 202 AQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 260 (302)
Q Consensus 202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 260 (302)
+.|+++|.|++++.||++|.|++++.|.+++|++++.|.+++.+++++|+++|.||+++
T Consensus 320 ~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~ 378 (450)
T PRK14360 320 VKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGT 378 (450)
T ss_pred cEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccc
Confidence 33333333433444444444444444444444444444444444445555555555543
No 129
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.30 E-value=2.3e-11 Score=113.76 Aligned_cols=59 Identities=22% Similarity=0.443 Sum_probs=28.3
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCc
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA 243 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~ 243 (302)
+.+++++.|.+++.|++++.|+++|.|. +++|+++|.|++++.|.+|+|+++|.|++++
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~ 330 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFA 330 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCce
Confidence 3455555555555555555555555552 4444444444444444444444444443333
No 130
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.30 E-value=1.2e-11 Score=101.22 Aligned_cols=107 Identities=27% Similarity=0.376 Sum_probs=65.9
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEe-------------ccE
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACIS-------------SSI 249 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~ 249 (302)
+.++|.+.|.+.+.++++++||+-|+|++++.|+++|+|++.++|. .+.||.+++|-+.+.|+ ..+
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~ 83 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLI 83 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEE
Confidence 4466666666666666666666666666666666666666666665 56677777777777664 256
Q ss_pred ECCCCEECCCcEEccC-------cEECCCcEECCceEEcCCeEecCcc
Q 022113 250 IGWHSTVGQWARVENM-------TILGEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 250 i~~~~~i~~~~~i~~~-------~~i~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
||+++.|..+++|..+ +.||+++.+-+.+.|.-+|+++...
T Consensus 84 IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ 131 (260)
T COG1043 84 IGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNC 131 (260)
T ss_pred ECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcE
Confidence 8888888888887432 4455554444444444444444443
No 131
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.29 E-value=5.5e-11 Score=95.26 Aligned_cols=95 Identities=18% Similarity=0.295 Sum_probs=66.3
Q ss_pred ccccccCceEecc---eEEcCCcEECCCCEECC------------CcEECCCCEECCCcEEeceEEccCCEECCCcEEec
Q 022113 183 SLKLATGANIVGN---VLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS 247 (302)
Q Consensus 183 ~~~~~~~~~i~~~---~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 247 (302)
...+++++.+.++ +.||+++.|+++|+|.+ +++||+++.|++++.+.++.|++++.|++++.|
T Consensus 27 ~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~I-- 104 (161)
T cd03359 27 KTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGKNCVI-- 104 (161)
T ss_pred ceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECCCCEE--
Confidence 4556677777764 57888888888888875 357888888888888888888888888877655
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
++++.|++++.|+++++|.+++++++.+++..
T Consensus 105 ---g~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g 136 (161)
T cd03359 105 ---GRRCIIKDCVKILDGTVVPPDTVIPPYSVVSG 136 (161)
T ss_pred ---cCCCEECCCcEECCCCEECCCCEeCCCCEEec
Confidence 44555555555555555566666666666543
No 132
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.29 E-value=3.9e-11 Score=112.23 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=38.2
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI 245 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i 245 (302)
+.+.+++.|++++.|++++.|+++|+|. +++||++|.|++++.|.+++|++++.|++++.+
T Consensus 275 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i 335 (459)
T PRK14355 275 TTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHL 335 (459)
T ss_pred CEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEE
Confidence 3344455555555555566666666553 567777777777777777777777666655444
No 133
>PLN02472 uncharacterized protein
Probab=99.29 E-value=4.2e-11 Score=101.61 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=34.0
Q ss_pred cccccCceEecc---eEEcCCcEECCCCEEC----------CCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113 184 LKLATGANIVGN---VLVHESAQIGEGCLIG----------PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI 245 (302)
Q Consensus 184 ~~~~~~~~i~~~---~~i~~~~~i~~~~~i~----------~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i 245 (302)
+.+.+++.++++ +.||+++.|+++|+|. ++++||++|.||++|.|.+|+|+++|.||.+|.|
T Consensus 84 a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI 158 (246)
T PLN02472 84 ASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPECIIGQHSIL 158 (246)
T ss_pred CEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCCCEECCCCEE
Confidence 344444544443 5556666666666663 2455666666666666555555555555555433
No 134
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.29 E-value=2.9e-11 Score=112.94 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=30.9
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECC
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKK 241 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~ 241 (302)
.+.+++++.|.+++.|++++.|+++|.|. ++.|+++|.|++++.|.+++|+++|.|++
T Consensus 267 ~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~ 324 (451)
T TIGR01173 267 DVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGP 324 (451)
T ss_pred CCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECC
Confidence 45566666666666666666666666553 44454444444444444333333333333
No 135
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.29 E-value=3.7e-11 Score=84.75 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=52.7
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCc
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWA 260 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 260 (302)
+.+.+++.+. ++.|++++.|+++|.|. +++|++++.|++++.|.+|++++++.|++++++.+|++++++.|++++
T Consensus 6 ~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 6 TQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSGYRVEAGT 80 (81)
T ss_pred CEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCCcEeCCCC
Confidence 4455666664 46677777777777774 477777777777777777777777777777777777777777776653
No 136
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.28 E-value=5.8e-11 Score=87.86 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=70.5
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 263 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 263 (302)
+.+.+++.|. +++|++++.|+ ++.|. +++|+++|.|++++.|.+|+|++++.|++++.+.++++++++.|++++++.
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~ 78 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIG 78 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEEC
Confidence 4567788884 67899999998 88884 899999999999999999999999999999999999999999999998886
Q ss_pred cC
Q 022113 264 NM 265 (302)
Q Consensus 264 ~~ 265 (302)
+.
T Consensus 79 ~~ 80 (104)
T cd04651 79 GD 80 (104)
T ss_pred CC
Confidence 54
No 137
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.28 E-value=4.3e-11 Score=101.98 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=78.8
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCc-EECCCCEECCCcEEe-ceEEccCCEECCCcEEec---------cEECC
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDV-AVGPGCVVESGVRLS-RCTVMRGVRIKKHACISS---------SIIGW 252 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~ 252 (302)
.++.+.+.|+-.+++++++.|+++++|..++ +||+. .| ++.|. +|+|+++|.|++++.|.. +.||+
T Consensus 154 VRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe 230 (319)
T TIGR03535 154 VRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGE 230 (319)
T ss_pred cEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECC
Confidence 4566677777778888888888888887777 67775 66 36666 688899999998888533 78999
Q ss_pred CCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113 253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 285 (302)
Q Consensus 253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v 285 (302)
+|+||.++.| +..||++|+|++|++|-.++.
T Consensus 231 ~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~ 261 (319)
T TIGR03535 231 RCLLGANSGL--GISLGDDCVVEAGLYVTAGTK 261 (319)
T ss_pred CcEECCCCEE--CeEECCCCEECCCCEEeCCeE
Confidence 9999999999 789999999999999998885
No 138
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.28 E-value=3.1e-11 Score=95.35 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=30.9
Q ss_pred ceEEccCCEECCCcEEe-----ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113 230 RCTVMRGVRIKKHACIS-----SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 230 ~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
+..|+.++.|.++|+|+ .++||+++.||.++.| ++|.|+++|.||.++++.+++
T Consensus 50 ~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aiv-HGc~Ig~~~lIGmgA~vldga 108 (176)
T COG0663 50 PIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVV-HGCTIGDNVLIGMGATVLDGA 108 (176)
T ss_pred ceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEE-EEeEECCCcEEecCceEeCCc
Confidence 45567777777766663 2566666666666655 445555555555444443333
No 139
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.2e-11 Score=107.57 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=73.6
Q ss_pred CEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113 208 CLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 287 (302)
Q Consensus 208 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~ 287 (302)
+.++..++|+++|.|++++.|.+|+||++|.||+.+.|.+|++.+|+.||+++.| .+|+||.+++||+++.+.+..+=|
T Consensus 329 ~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~I-ensIIg~gA~Ig~gs~L~nC~Ig~ 407 (433)
T KOG1462|consen 329 ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNI-ENSIIGMGAQIGSGSKLKNCIIGP 407 (433)
T ss_pred eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcce-ecceecccceecCCCeeeeeEecC
Confidence 5677788999999999999999999999999999999999999999999999999 789999999999998876544444
Q ss_pred Ccccc
Q 022113 288 HKEIK 292 (302)
Q Consensus 288 ~~~~~ 292 (302)
+.+++
T Consensus 408 ~yvVe 412 (433)
T KOG1462|consen 408 GYVVE 412 (433)
T ss_pred CcEEc
Confidence 44433
No 140
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=4.9e-11 Score=111.52 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=19.2
Q ss_pred CCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCC
Q 022113 217 GPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW 259 (302)
Q Consensus 217 g~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 259 (302)
|++|.|++++.+.++++++++.++++++++++++++++.|+++
T Consensus 343 g~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~ 385 (456)
T PRK14356 343 EEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAG 385 (456)
T ss_pred CCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCC
Confidence 3333333333333444444444444444444555555555544
No 141
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.25 E-value=3e-10 Score=93.57 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=63.4
Q ss_pred ceEEcCCcEECCCCEE----CCCcEECCCCEECCCcEEe---ceEEccCCEECCCcEEec--------------------
Q 022113 195 NVLVHESAQIGEGCLI----GPDVAVGPGCVVESGVRLS---RCTVMRGVRIKKHACISS-------------------- 247 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------- 247 (302)
+..+++++.++.+|.+ .+...||+++.|++++.|. ++.||++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 4446666666666665 3356777777777777775 567777777777777642
Q ss_pred --------cEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 248 --------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 248 --------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
++|+++++|++++.|.++++||++|.|++++++..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECc
Confidence 46788888888888888888888888888887653
No 142
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.25 E-value=9.4e-11 Score=100.43 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=61.2
Q ss_pred eEecceEEcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECC---CcEEeccEECCCCEECCCcEEccC
Q 022113 191 NIVGNVLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENM 265 (302)
Q Consensus 191 ~i~~~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~ 265 (302)
...-++.|++++.||+++.|.. +++||.+|.||++|.| ++++++|. .+...+.+||++|+||++++|.++
T Consensus 137 ~~~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg 211 (273)
T PRK11132 137 SVAFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN 211 (273)
T ss_pred eeeeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC
Confidence 3334555556666666666653 3455555666555554 44444442 122335788999999999999888
Q ss_pred cEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113 266 TILGEDVHVCDEIYSNG----GVV---LPHKEIK 292 (302)
Q Consensus 266 ~~i~~~~~v~~~~~v~~----~~v---~~~~~~~ 292 (302)
+.||++++||++++|.. +++ +|++.+.
T Consensus 212 v~IG~~a~IGAgSvV~~dVp~~~~v~G~PArvi~ 245 (273)
T PRK11132 212 IEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVG 245 (273)
T ss_pred CEECCCCEECCCCEECcccCCCcEEEecCcEEeC
Confidence 99999999999888553 333 4665544
No 143
>PLN02694 serine O-acetyltransferase
Probab=99.24 E-value=4.7e-11 Score=102.30 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=60.1
Q ss_pred eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEec-eEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113 196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
+-|+++++||+++.|.. +++||++|.||++|.|.+ ++++. + +..+..++++|+++|.||++++|..+++||+++
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg-~--g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a 237 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGG-T--GKACGDRHPKIGDGVLIGAGATILGNVKIGEGA 237 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCC-c--ccccCCCccEECCCeEECCeeEECCCCEECCCC
Confidence 34555555666655543 566666666666666542 22322 1 234455677888888888888888888888888
Q ss_pred EECCceEEcC----CeE---ecCccccc
Q 022113 273 HVCDEIYSNG----GVV---LPHKEIKS 293 (302)
Q Consensus 273 ~v~~~~~v~~----~~v---~~~~~~~~ 293 (302)
+|+++++|.. +++ +|.+.+..
T Consensus 238 ~IGAgSVV~kdVP~~~~v~G~PAkiv~~ 265 (294)
T PLN02694 238 KIGAGSVVLIDVPPRTTAVGNPARLVGG 265 (294)
T ss_pred EECCCCEECCcCCCCcEEEccCcEEEcc
Confidence 8888887653 333 46665553
No 144
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=1.2e-10 Score=109.65 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=14.8
Q ss_pred EEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 232 TVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 232 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
+|++++.|++.+.+++++||++|.||+++.+
T Consensus 359 ~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i 389 (482)
T PRK14352 359 TIGRGTKVPHLTYVGDADIGEHSNIGASSVF 389 (482)
T ss_pred EECCCcEEccCceecccEECCCcEECCCcEE
Confidence 3444444444444444555555555555433
No 145
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.23 E-value=6.2e-11 Score=111.32 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=35.7
Q ss_pred cccccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEE
Q 022113 182 SSLKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACI 245 (302)
Q Consensus 182 ~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i 245 (302)
....+.+++.|++++.|++++.|+++|.| .+++|+++|.|++++.|.+++|++++.|++++.+
T Consensus 275 ~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i-~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i 337 (481)
T PRK14358 275 RDVTIEPGVLLRGQTRVADGVTIGAYSVV-TDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARL 337 (481)
T ss_pred CCCEEeCCcEEeCCcEECCCCEECCCCEE-eeeEECCCCEEeecceecCCeEeCceEECCccEE
Confidence 34567777777777777777777666665 3455555555555555444444444444444444
No 146
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.23 E-value=1.4e-10 Score=95.65 Aligned_cols=46 Identities=17% Similarity=0.271 Sum_probs=35.8
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC----eE---ecCcccc
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG----VV---LPHKEIK 292 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~----~v---~~~~~~~ 292 (302)
..+||++|+||+++.|.+++.||+++.|++++++..+ ++ .|++.++
T Consensus 131 pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~ 183 (203)
T PRK09527 131 PITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIR 183 (203)
T ss_pred CeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEec
Confidence 3688999999999999999999999999999887643 33 4665544
No 147
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.22 E-value=1.5e-10 Score=94.20 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=27.9
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
...||++|+||+++.|.+++.||+++.|++++++..
T Consensus 129 ~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CeEECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 467888888888888888888888888888877543
No 148
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.22 E-value=1.2e-10 Score=108.21 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=46.3
Q ss_pred ceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEE-----eceEEccCCEECCCcEEeccEECCCCE
Q 022113 190 ANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRL-----SRCTVMRGVRIKKHACISSSIIGWHST 255 (302)
Q Consensus 190 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~ 255 (302)
..+.+++.+.+.+.||++|.|++++.|+ +|.|+++|.| .+|+|++++.|+++++|.+|.||+++.
T Consensus 254 ~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~ 323 (430)
T PRK14359 254 IYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEESIIENSDVGPLAHIRPKSEIKNTHIGNFVE 323 (430)
T ss_pred eEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEeccEEeCCEECCCCEECCCcEEeccEEcCcEE
Confidence 3456677777777788888888887665 5556666555 467788888888888887777776663
No 149
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.21 E-value=1.4e-10 Score=85.38 Aligned_cols=82 Identities=20% Similarity=0.359 Sum_probs=56.0
Q ss_pred EEcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECCCcE---EeccEECCCCEECCCcEEccCcEECCC
Q 022113 197 LVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKKHAC---ISSSIIGWHSTVGQWARVENMTILGED 271 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~i~~~ 271 (302)
.|+++++|++++.|.. .++|++++.|++++. |++++.|++++. ++.++|++++.|+.++.+.+++.|+++
T Consensus 4 ~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~-----i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~ 78 (101)
T cd03354 4 DIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCT-----IYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDN 78 (101)
T ss_pred EeCCCCEECCCEEECCCCeEEECCCCEECCCCE-----EcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCC
Confidence 3455555555555544 345566666666554 356666666664 677888888888888888888888888
Q ss_pred cEECCceEEcCC
Q 022113 272 VHVCDEIYSNGG 283 (302)
Q Consensus 272 ~~v~~~~~v~~~ 283 (302)
+.+++++.+.++
T Consensus 79 ~~i~~~~~i~~~ 90 (101)
T cd03354 79 VKIGANAVVTKD 90 (101)
T ss_pred CEECCCCEECcc
Confidence 888888887653
No 150
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.21 E-value=1.4e-10 Score=92.80 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
..++|+++|+|+++++|..+++||+++.|++++++..+
T Consensus 112 ~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~d 149 (162)
T TIGR01172 112 RHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKD 149 (162)
T ss_pred cCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCC
Confidence 44688888888888888888888888888888887654
No 151
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.21 E-value=3e-11 Score=90.57 Aligned_cols=93 Identities=20% Similarity=0.344 Sum_probs=64.6
Q ss_pred ceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEe-------------ceEEccCCEECCCcEEeccEECCCCEECC
Q 022113 195 NVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLS-------------RCTVMRGVRIKKHACISSSIIGWHSTVGQ 258 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 258 (302)
+.++...+.|.++|.|.+ ++.+|.+|+++++++|+ +.+||+++-|+++|++..+.|+..+.+|.
T Consensus 33 NI~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gk 112 (184)
T KOG3121|consen 33 NILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGK 112 (184)
T ss_pred eEEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEecc
Confidence 455556666777777765 77899999999998885 45788888888888887777777777776
Q ss_pred CcEEccCcEECCCcEECCceEEcCCeEec
Q 022113 259 WARVENMTILGEDVHVCDEIYSNGGVVLP 287 (302)
Q Consensus 259 ~~~i~~~~~i~~~~~v~~~~~v~~~~v~~ 287 (302)
++.|+++|++.+-|+|.+++++++.+++|
T Consensus 113 naviGrrCVlkdCc~ild~tVlPpet~vp 141 (184)
T KOG3121|consen 113 NAVIGRRCVLKDCCRILDDTVLPPETLVP 141 (184)
T ss_pred ceeEcCceEhhhheeccCCcccCcccccC
Confidence 66665555555555555555555444443
No 152
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.21 E-value=1.7e-10 Score=86.12 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=61.5
Q ss_pred eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEece---EEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113 196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRC---TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 270 (302)
Q Consensus 196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~ 270 (302)
+.|++++.|++++.|.+ ++.||++|.|++++.|.++ .+..++.+.+.....+++|++++.|++++.+.+++.|++
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~ig~ 81 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPGVTIGD 81 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCCCEECC
Confidence 45677777777777766 7888888888888888743 344444444445556777888888888888877778888
Q ss_pred CcEECCceEEc
Q 022113 271 DVHVCDEIYSN 281 (302)
Q Consensus 271 ~~~v~~~~~v~ 281 (302)
++.+++++.+.
T Consensus 82 ~~~i~~~~~v~ 92 (109)
T cd04647 82 GAVVGAGSVVT 92 (109)
T ss_pred CCEECCCCEEe
Confidence 87777777766
No 153
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.21 E-value=1.1e-10 Score=108.84 Aligned_cols=12 Identities=8% Similarity=0.052 Sum_probs=6.3
Q ss_pred ChHHHHHcHhhh
Q 022113 27 TAGPLALARDKL 38 (302)
Q Consensus 27 t~~al~~a~~~i 38 (302)
+...+....+..
T Consensus 103 ~~~~i~~l~~~~ 114 (448)
T PRK14357 103 SENTLKRLIEEH 114 (448)
T ss_pred CHHHHHHHHHHH
Confidence 344555555544
No 154
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.20 E-value=1.5e-10 Score=108.30 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=24.6
Q ss_pred CCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCC
Q 022113 205 GEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQW 259 (302)
Q Consensus 205 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 259 (302)
+++|.|.+++.||++|.|++++.|.++.|++++.+++.+.+++++|++++.|+++
T Consensus 326 g~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~ 380 (458)
T PRK14354 326 GPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCG 380 (458)
T ss_pred CCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCc
Confidence 3333333334444444444444444444444444444444444555555544443
No 155
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.19 E-value=2.3e-10 Score=88.01 Aligned_cols=62 Identities=26% Similarity=0.395 Sum_probs=40.6
Q ss_pred ccccccCceEecceEEcCCcEECCCCEEC----CCcEECCCCEECCCcEEeceEEccC----CEECCCcEE
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIG----PDVAVGPGCVVESGVRLSRCTVMRG----VRIKKHACI 245 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~----~~~~ig~~~~i~~~~~i~~~~i~~~----~~i~~~~~i 245 (302)
.+.+.+++.|-+.+.+..++.||++|.|. .+++||.+|.|++++.|. +.+..+ +.||++|.|
T Consensus 13 ~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~I 82 (147)
T cd04649 13 GAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLL 82 (147)
T ss_pred CCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE-EECCCCcccCEEECCCCEE
Confidence 35566666666677777777777777776 677777777777777776 444444 455555444
No 156
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.18 E-value=2.3e-10 Score=104.47 Aligned_cols=89 Identities=21% Similarity=0.353 Sum_probs=73.5
Q ss_pred eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113 191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 270 (302)
Q Consensus 191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~ 270 (302)
.+.+...+.+.+.|++++.| .++.||++|.|+. .+.+|+|+++|.|+++|+|.+|+|++++.|++++.| .+++|++
T Consensus 272 ~~~~~~~~~~~~~i~~~~~i-~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i-~~~ii~~ 347 (380)
T PRK05293 272 RIYSVNPNLPPQYIAENAKV-KNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVI-ERAIIGE 347 (380)
T ss_pred ceecCCcCCCCCEECCCCEE-ecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEE-eEEEECC
Confidence 34344445556777777777 4778888888863 567999999999999999999999999999999999 6699999
Q ss_pred CcEECCceEEcCC
Q 022113 271 DVHVCDEIYSNGG 283 (302)
Q Consensus 271 ~~~v~~~~~v~~~ 283 (302)
+++|++++.+.++
T Consensus 348 ~~~i~~~~~i~~~ 360 (380)
T PRK05293 348 NAVIGDGVIIGGG 360 (380)
T ss_pred CCEECCCCEEcCC
Confidence 9999999988776
No 157
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.17 E-value=1.8e-10 Score=96.75 Aligned_cols=109 Identities=22% Similarity=0.454 Sum_probs=86.2
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCC---------
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEP--------- 83 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------- 83 (302)
+..+.+..+.+.+|||++++.+++.+. ++|++++||.+++.++.++++.|++.++.+|+++++...+
T Consensus 75 ~~~~~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~ 150 (214)
T cd04198 75 KLDEVTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGK 150 (214)
T ss_pred ceeEEEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCccc
Confidence 345666667889999999999999873 6899999999999999999999999999999988875421
Q ss_pred ----CCcceEEEeCCCCcEEEEEec-----------------CCC-CCCCeEEEEEEEeCHhhH
Q 022113 84 ----SKYGVVVMEESTGKVEKFVEK-----------------PKL-FVGNKINAGIYLLNPAVL 125 (302)
Q Consensus 84 ----~~~g~v~~d~~~~~v~~~~ek-----------------p~~-~~~~~~~~Giy~~~~~~l 125 (302)
..+.++.+|+.+.+++.+... |.. ..+++.++++|+|+++++
T Consensus 151 ~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 151 SKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred ccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 236788888877888877652 111 136788999999998764
No 158
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.16 E-value=4.4e-10 Score=96.44 Aligned_cols=153 Identities=23% Similarity=0.304 Sum_probs=108.5
Q ss_pred EEecCCCCCChHHHHHcHhhhccCC-CCcEEEEeCCeec-CcC-HHHHHHH---HHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 18 CSQETEPLGTAGPLALARDKLIDDT-GEPFFVLNSDVIS-EYP-FAEMIEF---HKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 18 ~~~~~~~~Gt~~al~~a~~~i~~~~-~~~~lv~~gD~l~-~~~-l~~~~~~---~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
++.|+....||.||..|.-.+.... +.-++|+.+|++. +.+ |.+.++. ..+++..+|+...|..+.++||++..
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt~PeTGYGYIe~ 159 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPTRPETGYGYIET 159 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCCCCccCcceeec
Confidence 8999999999999998877664322 2346888999966 333 6554443 34466888999999888899999988
Q ss_pred eCC-----CCcEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCCCCC-------------------cccc
Q 022113 92 EES-----TGKVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELRPTS-------------------IEKE 138 (302)
Q Consensus 92 d~~-----~~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~~~~-------------------~~~~ 138 (302)
.+. ..+|.+|.|||+.. ...+||+|+|+|+...+ +.+..-.++ +..+
T Consensus 160 G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~~~~~~~~~~d~~~~~l~~e 239 (333)
T COG0836 160 GESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCAAEKAFEAAVDENSVRLDNE 239 (333)
T ss_pred CcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHHHHHHHhcccccchhcccHH
Confidence 542 24789999999753 24699999999998654 554321111 0011
Q ss_pred c----------hHHHHhcCcEEEEEecCeeEecCChHHHHHH
Q 022113 139 V----------FPKIALEGKLFAMVLPGFWMDIGQPRDYITG 170 (302)
Q Consensus 139 ~----------~~~l~~~~~v~~~~~~g~~~digt~~~~~~a 170 (302)
- |-.+.+..++.+.+.+-.|.|+|++.++++.
T Consensus 240 ~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~ 281 (333)
T COG0836 240 AYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEV 281 (333)
T ss_pred HHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHH
Confidence 1 2234556788888888889999999887665
No 159
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.16 E-value=2.6e-10 Score=79.51 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=43.7
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
.+++++.|++++.|.++++||++|.|++++.|.+..... ......++++++++.++.+.+++.|++++.|++
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~ 73 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGA 73 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCCCEECCCCEECc
Confidence 355555555556665556666666666666555432221 223356666666666666666666666666666
Q ss_pred ceEE
Q 022113 277 EIYS 280 (302)
Q Consensus 277 ~~~v 280 (302)
++.+
T Consensus 74 ~s~v 77 (78)
T cd00208 74 GAVV 77 (78)
T ss_pred CcEe
Confidence 6554
No 160
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.16 E-value=3e-10 Score=79.90 Aligned_cols=56 Identities=21% Similarity=0.134 Sum_probs=29.2
Q ss_pred EEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 232 TVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 232 ~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
+|+++|.|++++.|.++++++++.|++++.+ .++++++++.+++++.+..++++++
T Consensus 19 ~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i-~~sii~~~~~v~~~~~~~~~~~ig~ 74 (80)
T cd05824 19 VIGPNVTIGDGVRLQRCVILSNSTVRDHSWV-KSSIVGWNSTVGRWTRLENVTVLGD 74 (80)
T ss_pred EECCCCEECCCcEEeeeEEcCCCEECCCCEE-eCCEEeCCCEECCCcEEecCEEECC
Confidence 3444555555555555555555555555555 3355555555555555544444443
No 161
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.16 E-value=4e-10 Score=91.00 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=27.6
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
++.||++|+||+++.|.+++.||+++.|++++++..
T Consensus 118 ~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 118 PITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred CcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 467788888888888777778888887777777654
No 162
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.5e-10 Score=102.29 Aligned_cols=79 Identities=16% Similarity=0.324 Sum_probs=65.1
Q ss_pred cccccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEE
Q 022113 180 KKSSLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTV 256 (302)
Q Consensus 180 ~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i 256 (302)
..+++++.+++.+ .++.|++||+|.+ +|+|++++.|+++|+|.+|+||++|.||++|+|.+++|.++|.|
T Consensus 282 ~~pPak~~~~s~v-------~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I 354 (393)
T COG0448 282 NLPPAKFVNDSEV-------SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVI 354 (393)
T ss_pred CCCCceEecCceE-------eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEe
Confidence 4455666666654 4445555555543 88999999999999999999999999999999999999999999
Q ss_pred CCCcEEccC
Q 022113 257 GQWARVENM 265 (302)
Q Consensus 257 ~~~~~i~~~ 265 (302)
+++++|+.+
T Consensus 355 ~~g~~i~~~ 363 (393)
T COG0448 355 GEGVVIGGD 363 (393)
T ss_pred CCCcEEcCC
Confidence 999998765
No 163
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.15 E-value=1.3e-10 Score=97.81 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=81.0
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHH--HHHcCCcEEEEEEeC--CC------
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEF--HKAHGGEASIMVTKV--DE------ 82 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~--~~~~~~~~~l~~~~~--~~------ 82 (302)
++.+.+..+.+.+|||++++.+++++. ++|++++||++++.++.++++. +...++++++++... ++
T Consensus 77 ~v~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (216)
T cd02507 77 IVDVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSK 152 (216)
T ss_pred eEEEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccc
Confidence 345667777789999999999999883 6899999999999999999964 333344555444443 22
Q ss_pred -CCCcceEEEeCCC--CcEEEEEecCCCC------------------CCCeEEEEEEEeCHhhH
Q 022113 83 -PSKYGVVVMEEST--GKVEKFVEKPKLF------------------VGNKINAGIYLLNPAVL 125 (302)
Q Consensus 83 -~~~~g~v~~d~~~--~~v~~~~ekp~~~------------------~~~~~~~Giy~~~~~~l 125 (302)
+..++++.+|+.+ .+++.+.|+|... .+++.++|+|+|+++++
T Consensus 153 ~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 153 KTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 3457999999855 5777777766431 35788999999998764
No 164
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.12 E-value=7.1e-10 Score=88.76 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=34.6
Q ss_pred ceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEec---------eEEccCCEECCCcEEe-ccEECCCCEEC
Q 022113 190 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLSR---------CTVMRGVRIKKHACIS-SSIIGWHSTVG 257 (302)
Q Consensus 190 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i~ 257 (302)
+.|++.+.|++++.|++ +++|++++.||++|.|++++.|.. ++|+++|.|+.++.|. +++||+++.|+
T Consensus 62 ~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Ig 141 (162)
T TIGR01172 62 VDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKIG 141 (162)
T ss_pred eEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEEC
Confidence 44444444444444432 244444455555555555554442 3555555555555552 24445554444
Q ss_pred CCcEE
Q 022113 258 QWARV 262 (302)
Q Consensus 258 ~~~~i 262 (302)
+++.+
T Consensus 142 a~s~V 146 (162)
T TIGR01172 142 ANSVV 146 (162)
T ss_pred CCCEE
Confidence 44444
No 165
>PLN02357 serine acetyltransferase
Probab=99.11 E-value=5.6e-10 Score=98.35 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=46.7
Q ss_pred eEEcCCcEECCCCEECC--CcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113 196 VLVHESAQIGEGCLIGP--DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 196 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
+-|+++++||.|+.|.. +++||++|+||++|.|. +++|+.. +.....++++||++|+||+++.|..+++||+++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~IlggV~IGdga 303 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGNITIGEGA 303 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECCeEECCCC
Confidence 33445555555555543 34555555555555443 2222221 111113456777777777777777777777777
Q ss_pred EECCceEEcC
Q 022113 273 HVCDEIYSNG 282 (302)
Q Consensus 273 ~v~~~~~v~~ 282 (302)
+||++++|..
T Consensus 304 ~IGAgSVV~~ 313 (360)
T PLN02357 304 KIGAGSVVLK 313 (360)
T ss_pred EECCCCEECc
Confidence 7777777543
No 166
>PRK10191 putative acyl transferase; Provisional
Probab=99.10 E-value=7.4e-10 Score=86.55 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=25.6
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
+.||++++|++++.+.+++.||+++.+++++++..+
T Consensus 93 ~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V~~d 128 (146)
T PRK10191 93 PHIGNGVELGANVIILGDITIGNNVTVGAGSVVLDS 128 (146)
T ss_pred CEECCCcEEcCCCEEeCCCEECCCCEECCCCEECCc
Confidence 467777777777777777777777777777766543
No 167
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.09 E-value=2.1e-10 Score=101.63 Aligned_cols=106 Identities=19% Similarity=0.350 Sum_probs=76.0
Q ss_pred cCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEec-cEECCCCEECCCcEEccCc
Q 022113 188 TGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS-SIIGWHSTVGQWARVENMT 266 (302)
Q Consensus 188 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~ 266 (302)
+++.+.+.+.|+.++.||++|+| .+|.|++++.|...++|.+|.|+++|.||+.++++. +.++++++||.++.+ .++
T Consensus 279 p~v~l~G~t~ig~~v~iGpg~~i-~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv-K~a 356 (460)
T COG1207 279 PNVILEGNTVIGDNVVIGPGSVI-KDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV-KKA 356 (460)
T ss_pred cCcEEeeeEEECCceEECCCcEE-EeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE-ecc
Confidence 33333334444444444444444 247777778887777888888888888888888864 888888999988888 778
Q ss_pred EECCCcEECCceE-----EcCCeEecCccccccc
Q 022113 267 ILGEDVHVCDEIY-----SNGGVVLPHKEIKSSI 295 (302)
Q Consensus 267 ~i~~~~~v~~~~~-----v~~~~v~~~~~~~~~~ 295 (302)
.||++++++.=++ |+.++-+++.+|.|+|
T Consensus 357 ~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNY 390 (460)
T COG1207 357 TIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNY 390 (460)
T ss_pred cccCCccccceeeeccceecCCceeccceEEEcC
Confidence 8888888888555 4455558888888885
No 168
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.07 E-value=1.1e-09 Score=99.05 Aligned_cols=94 Identities=15% Similarity=0.164 Sum_probs=82.9
Q ss_pred EecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCc-EECC
Q 022113 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT-ILGE 270 (302)
Q Consensus 192 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~-~i~~ 270 (302)
+.+.+.+.+.+.|+++|.| ++++|++.|.||++|.|.+++|+++|.|+++|+|++|.| .++.|+++++|+.+. .+ .
T Consensus 245 i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i-~~s~i~~~~~i~~~~~~~-~ 321 (353)
T TIGR01208 245 VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV-EHSIVLDESVIEGVQARI-V 321 (353)
T ss_pred cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE-EeeEEcCCCEEcCCccee-e
Confidence 5567888899999999999 899999999999999999999999999999999999888 489999999997764 55 5
Q ss_pred CcEECCceEEcCCeEecC
Q 022113 271 DVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 271 ~~~v~~~~~v~~~~v~~~ 288 (302)
++.++.++.+++++.++.
T Consensus 322 ~~ii~~~~~i~~~~~~~~ 339 (353)
T TIGR01208 322 DSVIGKKVRIKGNRRRPG 339 (353)
T ss_pred cCEEcCCCEECCCccccc
Confidence 788999999988887764
No 169
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.05 E-value=9.5e-10 Score=101.29 Aligned_cols=71 Identities=20% Similarity=0.215 Sum_probs=65.8
Q ss_pred ECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcC
Q 022113 210 IGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG 282 (302)
Q Consensus 210 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~ 282 (302)
+.++++||++|.|+ ++.|.+|+|+++|.|+++|+|.+|+|+++|.|+++++| .+++|+++++|+++++++.
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i-~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVV-RRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCCEECC
Confidence 34679999999998 89999999999999999999999999999999999999 6699999999999998876
No 170
>PLN02739 serine acetyltransferase
Probab=99.03 E-value=1.1e-09 Score=95.88 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=30.2
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccc
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIK 292 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~ 292 (302)
+.+||++|+||++++|..++.||+++.||+|++|. ++++ +|++.++
T Consensus 257 ~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~ 309 (355)
T PLN02739 257 HPKIGDGALLGACVTILGNISIGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIG 309 (355)
T ss_pred CcEECCCCEEcCCCEEeCCeEECCCCEECCCCEECCCCCCCcEEEecCCEEec
Confidence 35677777777777777777777777777777644 3333 4565554
No 171
>PLN02694 serine O-acetyltransferase
Probab=99.03 E-value=1.9e-09 Score=92.53 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=53.9
Q ss_pred ccccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCC---cEEeceEEccCCEECCCcEE-eccEECCCCEECC
Q 022113 185 KLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESG---VRLSRCTVMRGVRIKKHACI-SSSIIGWHSTVGQ 258 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~---~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~ 258 (302)
.+++++.|+++++|+. ++.||++|.|+.+|.|..++.+|.. +...+++|+++|.||.++.| ++++||+++.|++
T Consensus 162 dI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IGA 241 (294)
T PLN02694 162 DIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIGA 241 (294)
T ss_pred EeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEECC
Confidence 3455555555555543 4444555555555555555554431 12235789999999999988 6788888888888
Q ss_pred CcEEccCcEECCCcE
Q 022113 259 WARVENMTILGEDVH 273 (302)
Q Consensus 259 ~~~i~~~~~i~~~~~ 273 (302)
++.+..+ |.++++
T Consensus 242 gSVV~kd--VP~~~~ 254 (294)
T PLN02694 242 GSVVLID--VPPRTT 254 (294)
T ss_pred CCEECCc--CCCCcE
Confidence 8888652 444443
No 172
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.03 E-value=3.4e-09 Score=90.55 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred ccCceEecceEEcCCcEECCCCEECCCcEECCCC-EECCCcEEeceEEccCCEECCCcEEec-cEECC----C----CEE
Q 022113 187 ATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGC-VVESGVRLSRCTVMRGVRIKKHACISS-SIIGW----H----STV 256 (302)
Q Consensus 187 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~-~i~~~~~i~~~~i~~~~~i~~~~~i~~-~~i~~----~----~~i 256 (302)
+.+++|.+...+--++.||+|++|.+.++|..++ .||+. .| ++.|.++|.||+++.|+. +.|+. + +.|
T Consensus 151 p~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI-~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~I 228 (319)
T TIGR03535 151 PTGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV-EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISI 228 (319)
T ss_pred CCccEECCCceeeeccEECCCCEEcCCCEEccCceEecCc-eE-EEEEccCCEECCCCEECCCceecceecCCCcccEEE
Confidence 4455555555555555666666666666666666 46653 33 455666666666666643 33333 3 556
Q ss_pred CCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 257 GQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 257 ~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
|++|.|+.++.| +..||++++|++|++|
T Consensus 229 Ge~~~IGagA~I--GI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 229 GERCLLGANSGL--GISLGDDCVVEAGLYV 256 (319)
T ss_pred CCCcEECCCCEE--CeEECCCCEECCCCEE
Confidence 666666655555 5556666666665544
No 173
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.02 E-value=1.7e-09 Score=98.19 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=25.1
Q ss_pred CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
+++|+++|.|+++|+|.+|+|++++.|++++.|.+|++++++.|++++.|
T Consensus 310 ~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 310 HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVI 359 (361)
T ss_pred ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEe
Confidence 44555555555555555555555555555555554555444444444443
No 174
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.02 E-value=7.5e-09 Score=84.30 Aligned_cols=93 Identities=15% Similarity=0.228 Sum_probs=51.2
Q ss_pred CceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEe-------------ccEECCCCE
Q 022113 189 GANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACIS-------------SSIIGWHST 255 (302)
Q Consensus 189 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-------------~~~i~~~~~ 255 (302)
++.|.+++.+ .+|.++.|+++++|+.+|+|++.+.| .||++|.|++++.+. ...++..+.
T Consensus 59 ~~~i~~~~~~----~~g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~ 131 (183)
T PRK10092 59 EAYIEPTFRC----DYGYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVT 131 (183)
T ss_pred CEEEeCCEEE----eecCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeE
Confidence 4455554432 23444444444444444444444433 455555555555553 123455667
Q ss_pred ECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 256 VGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
||++++|+.+++|.++++||++++|++++++..
T Consensus 132 IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 132 IGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK 164 (183)
T ss_pred ECCCcEECCCCEECCCCEECCCCEECCCCEEcc
Confidence 777777777777777777777777777776543
No 175
>PRK10191 putative acyl transferase; Provisional
Probab=99.02 E-value=3.8e-09 Score=82.52 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=34.7
Q ss_pred ccccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCCcEEe--ceEEccCCEECCCcEEe-ccEECCCCEECCC
Q 022113 185 KLATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVRLS--RCTVMRGVRIKKHACIS-SSIIGWHSTVGQW 259 (302)
Q Consensus 185 ~~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i~--~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~ 259 (302)
.+++++.+++++.+++ ++.|++++.||++++|+.+|.||+..... .+.|+++|.|+.++.+. ++.|++++.|+++
T Consensus 43 ~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igag 122 (146)
T PRK10191 43 EIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAG 122 (146)
T ss_pred ccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCC
Confidence 3444455554444444 23444444444444444444444332211 23455555555555553 2444444444444
Q ss_pred cEE
Q 022113 260 ARV 262 (302)
Q Consensus 260 ~~i 262 (302)
+.+
T Consensus 123 s~V 125 (146)
T PRK10191 123 SVV 125 (146)
T ss_pred CEE
Confidence 444
No 176
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.01 E-value=5.8e-09 Score=77.60 Aligned_cols=85 Identities=21% Similarity=0.224 Sum_probs=52.2
Q ss_pred eEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEeceEEccCCEECCCc-EEeccEECCCCEECCCcEEccCcEECCCc
Q 022113 196 VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTVMRGVRIKKHA-CISSSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 196 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
..+|+++.|++++.|. +.+.||++|.|++++.|.... +........ ..+...|+++|+|+.++.|.+++.|++++
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~--h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~ 81 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGS--HDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGA 81 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCC--CCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCC
Confidence 4456666666666663 356677777777776664210 111111111 22457788888888888888788888888
Q ss_pred EECCceEEcC
Q 022113 273 HVCDEIYSNG 282 (302)
Q Consensus 273 ~v~~~~~v~~ 282 (302)
.|++++.+..
T Consensus 82 ~i~~gs~v~~ 91 (107)
T cd05825 82 VVGARSVVVR 91 (107)
T ss_pred EECCCCEEeC
Confidence 8888777754
No 177
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.00 E-value=3.7e-09 Score=73.55 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=36.4
Q ss_pred ECCCCEECCCcEEec-eEEccCCEECCCcEEeccEEC---CCCEECCCcEEccCcEECCCcEECCceEEcCCeE
Q 022113 216 VGPGCVVESGVRLSR-CTVMRGVRIKKHACISSSIIG---WHSTVGQWARVENMTILGEDVHVCDEIYSNGGVV 285 (302)
Q Consensus 216 ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~---~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v 285 (302)
||+++.|++++.|.. +.|+++|.|++++.+.+.... ..+.|+++++++.++.+.++++|++++.++++++
T Consensus 3 ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~ 76 (78)
T cd00208 3 IGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAV 76 (78)
T ss_pred ECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcE
Confidence 333333333343332 455555555555555544322 3356666666666666666666666666655554
No 178
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.00 E-value=8.5e-09 Score=85.13 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=39.0
Q ss_pred eEEccCCEECCCcEEec-------------cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecCc
Q 022113 231 CTVMRGVRIKKHACISS-------------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHK 289 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~~ 289 (302)
..||++|.|++++.|.. ......+.||++++|+.+++|.++++||++++|+++++|...
T Consensus 96 I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd 167 (203)
T PRK09527 96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD 167 (203)
T ss_pred EEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc
Confidence 34555555555555531 223445778888888888888888888888888888776643
No 179
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.99 E-value=2e-09 Score=99.70 Aligned_cols=91 Identities=10% Similarity=0.205 Sum_probs=74.9
Q ss_pred EecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC-------------------
Q 022113 192 IVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW------------------- 252 (302)
Q Consensus 192 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~------------------- 252 (302)
+...+.+.+.+.+ .++.|. ++.||++|.| +++.|.+|+|+++|.|+++|.|.+|+|+.
T Consensus 289 i~~~~~~~~~a~~-~~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~ 365 (429)
T PRK02862 289 IYTRARYLPPSKL-LDATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKP 365 (429)
T ss_pred eeccCCCCCCccc-cccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCc
Confidence 3434455566666 367774 6899999999 88999999999999999999999999976
Q ss_pred CCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 253 HSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 253 ~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
++.||++|.| .+++|+++++||+++.+.++..+
T Consensus 366 ~~~Ig~~~~i-~~~ii~~~~~i~~~~~~~~~~~~ 398 (429)
T PRK02862 366 PLGIGEGTTI-KRAIIDKNARIGNNVRIVNKDNV 398 (429)
T ss_pred ccEECCCCEE-EEEEECCCcEECCCcEEecCCCc
Confidence 6999999999 66999999999999888654433
No 180
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.99 E-value=6.9e-09 Score=76.33 Aligned_cols=78 Identities=24% Similarity=0.280 Sum_probs=49.4
Q ss_pred cccCceEecceEEcC--CcEECCCCEECCCcEECCCCEECCCcE---EeceEEccCCEECCCcEEec-cEECCCCEECCC
Q 022113 186 LATGANIVGNVLVHE--SAQIGEGCLIGPDVAVGPGCVVESGVR---LSRCTVMRGVRIKKHACISS-SIIGWHSTVGQW 259 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~-~~i~~~~~i~~~ 259 (302)
+++++.|+++++++. ++.|++++.|++++.|+.++.|+.++. +..++|+++|.|+.++.+.. +.+++++.|+++
T Consensus 5 i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~ 84 (101)
T cd03354 5 IHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTIYQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGNITIGDNVKIGAN 84 (101)
T ss_pred eCCCCEECCCEEECCCCeEEECCCCEECCCCEEcCCCEECCCccCCcCCCCEECCCcEEcCCCEEECcCEECCCCEECCC
Confidence 455566666666654 445666666666666666666666664 44667777777777777744 556666666655
Q ss_pred cEEc
Q 022113 260 ARVE 263 (302)
Q Consensus 260 ~~i~ 263 (302)
+.|.
T Consensus 85 ~~i~ 88 (101)
T cd03354 85 AVVT 88 (101)
T ss_pred CEEC
Confidence 5553
No 181
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.97 E-value=3.6e-09 Score=90.73 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred ccCceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCC
Q 022113 187 ATGANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHS 254 (302)
Q Consensus 187 ~~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~ 254 (302)
..++.|++.+.||+++.|++ +++|+.++.||++|.|..+++|. +..|+++|.||.+|.| +++.||+++
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a 218 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA 218 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCC
Confidence 34555555555666555543 44666666666666666666665 3578888888888777 456777777
Q ss_pred EECCCcEEcc
Q 022113 255 TVGQWARVEN 264 (302)
Q Consensus 255 ~i~~~~~i~~ 264 (302)
.||+++.+..
T Consensus 219 ~IGAgSvV~~ 228 (273)
T PRK11132 219 KIGAGSVVLQ 228 (273)
T ss_pred EECCCCEECc
Confidence 7777776644
No 182
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.96 E-value=4.3e-09 Score=97.37 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=63.6
Q ss_pred cceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCc
Q 022113 194 GNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMT 266 (302)
Q Consensus 194 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 266 (302)
.+++|+++|.| ++|.|. +|+|+++|.|+++|.|.+|+|+++|.|+++|+|.+|+|++++.|++++.|+.++
T Consensus 326 ~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~ 396 (425)
T PRK00725 326 INSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDP 396 (425)
T ss_pred EeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCC
Confidence 47889999999 788886 799999999999999999999999999999999999999999998887775443
No 183
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.96 E-value=1.5e-08 Score=81.87 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=26.7
Q ss_pred EECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
..+..+.||++++|+.+++|.++++||++++|++++++..
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 3455667777777777777777777777777777666543
No 184
>PLN02739 serine acetyltransferase
Probab=98.95 E-value=4.4e-09 Score=92.04 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=44.1
Q ss_pred eEecceEEcCCcEEC--CCCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEECC
Q 022113 191 NIVGNVLVHESAQIG--EGCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTVGQ 258 (302)
Q Consensus 191 ~i~~~~~i~~~~~i~--~~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~ 258 (302)
.|++.+.||+++.|+ .+++|+.+++||++|.|..+++|. +..|+++|.||.++.| +++.||+++.||+
T Consensus 207 dI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGA 286 (355)
T PLN02739 207 DIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAA 286 (355)
T ss_pred ccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECC
Confidence 344444444444443 244555555555555555555553 3678888888888777 5577777777777
Q ss_pred CcEEcc
Q 022113 259 WARVEN 264 (302)
Q Consensus 259 ~~~i~~ 264 (302)
++.+..
T Consensus 287 GSVV~k 292 (355)
T PLN02739 287 GSLVLK 292 (355)
T ss_pred CCEECC
Confidence 777654
No 185
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.93 E-value=5.3e-09 Score=95.20 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=22.0
Q ss_pred cEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 214 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 214 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
|+|+++|.|+++|.|.+|++++++.|++++.+.+|++++++.|++++++
T Consensus 305 s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 305 SILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKI 353 (369)
T ss_pred CEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEe
Confidence 4444444444444444444444444444444444444444444444433
No 186
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.91 E-value=1e-08 Score=88.11 Aligned_cols=31 Identities=3% Similarity=0.069 Sum_probs=16.0
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
|.||.++.| +..|+.+|+|+.++.|-+++.|
T Consensus 257 ~lIGagA~I--GI~IGd~~iIGAGavVtagTkI 287 (341)
T TIGR03536 257 CLLGANAGI--GIPLGDRCTVEAGLYITAGTKV 287 (341)
T ss_pred cEECCCCEE--eeEECCCCEECCCCEEeCCcEE
Confidence 444445544 4555555555555555555443
No 187
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.91 E-value=1.6e-08 Score=75.16 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred eEEccCCEECCCcEEec----------cEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113 231 CTVMRGVRIKKHACISS----------SIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 287 (302)
Q Consensus 231 ~~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~ 287 (302)
..|+++|.|++++.|.. ..+...+.|+++++|+.++.|..+++|++++++++++++.
T Consensus 24 i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 24 VTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred eEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence 34555555555555421 2344456666666666666666666666666666666554
No 188
>PLN02917 CMP-KDO synthetase
Probab=98.91 E-value=9.2e-08 Score=83.93 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=105.7
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEE----eCCCCCC
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVT----KVDEPSK 85 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~----~~~~~~~ 85 (302)
.++++.+..+..+.||+++ ..+++.+..+ .+.+++++||. +. ...++++++.+.+. ++.+++.. ..+++..
T Consensus 107 ~~v~vi~~~~~~~~GT~~~-~~a~~~l~~~-~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ 183 (293)
T PLN02917 107 FGADVIMTSESCRNGTERC-NEALKKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASD 183 (293)
T ss_pred cCCEEEeCCcccCCchHHH-HHHHHhccCC-CCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcC
Confidence 4665544445667899987 5788877532 36788899999 55 45599999988654 34443333 4467889
Q ss_pred cceEE--EeCCCCcEEEEEec--C---C----CCCCCeEEEEEEEeCHhhHhhccCC-CCCccccchH----HHHhcCcE
Q 022113 86 YGVVV--MEESTGKVEKFVEK--P---K----LFVGNKINAGIYLLNPAVLDRIELR-PTSIEKEVFP----KIALEGKL 149 (302)
Q Consensus 86 ~g~v~--~d~~~~~v~~~~ek--p---~----~~~~~~~~~Giy~~~~~~l~~l~~~-~~~~~~~~~~----~l~~~~~v 149 (302)
||.+. .|+ +|+++.|... | + .....+.++|+|.|+.+.|..+..- ....+.+++. .+.+..++
T Consensus 184 ygrv~vv~~~-~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i 262 (293)
T PLN02917 184 PNRVKCVVDN-QGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKM 262 (293)
T ss_pred CCceEEEECC-CCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCce
Confidence 99885 564 6886655432 1 1 1123588999999999988766432 2234444433 22233467
Q ss_pred EEEEecCeeEecCChHHHHHHHHHHH
Q 022113 150 FAMVLPGFWMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 150 ~~~~~~g~~~digt~~~~~~a~~~~l 175 (302)
..+..+.....++||+++..+++.+.
T Consensus 263 ~~~~~~~~~~GVnt~~dL~~ae~~~~ 288 (293)
T PLN02917 263 KVIKVDHEAHGVDTPEDVEKIEALMR 288 (293)
T ss_pred EEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 77776666779999999999988764
No 189
>PLN02357 serine acetyltransferase
Probab=98.90 E-value=1.2e-08 Score=90.14 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=49.5
Q ss_pred ceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEEC
Q 022113 190 ANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTVG 257 (302)
Q Consensus 190 ~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i~ 257 (302)
..|++.+.||+++.|.. +++|+++++||++|.|..+++|. +++|+++|.||.++.| ++.+||+++.||
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence 34445555555555543 44555555555555555555553 4789999999999877 678888888888
Q ss_pred CCcEEcc
Q 022113 258 QWARVEN 264 (302)
Q Consensus 258 ~~~~i~~ 264 (302)
+++.+.+
T Consensus 307 AgSVV~~ 313 (360)
T PLN02357 307 AGSVVLK 313 (360)
T ss_pred CCCEECc
Confidence 8888754
No 190
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.88 E-value=2.1e-08 Score=80.27 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=34.6
Q ss_pred ccEECCCCEECCCcEEccCcEECCCcEECCceEEcC----CeE---ecCcccc
Q 022113 247 SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNG----GVV---LPHKEIK 292 (302)
Q Consensus 247 ~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~----~~v---~~~~~~~ 292 (302)
+=+|++++.||++++|..+-.||++++||++++|.. +++ +|.|.+.
T Consensus 119 hPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVlkdVP~~~tvvGvPArii~ 171 (194)
T COG1045 119 HPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171 (194)
T ss_pred CCccCCCeEECCCCEEEcceEECCCCEECCCceEccCCCCCceEecCcceEec
Confidence 346788888888888877788888888888888553 332 6787776
No 191
>PRK10502 putative acyl transferase; Provisional
Probab=98.88 E-value=1.4e-08 Score=82.88 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=47.9
Q ss_pred cccccCceEecc--------eEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEec-e---------EEccCCEECCCc
Q 022113 184 LKLATGANIVGN--------VLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSR-C---------TVMRGVRIKKHA 243 (302)
Q Consensus 184 ~~~~~~~~i~~~--------~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~-~---------~i~~~~~i~~~~ 243 (302)
+.+.+++.|.++ ..|++++.|+++|.|. ..++||++|.|++++.|.. + .+...+.||++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 344555555443 4456666666666664 2456777777777776631 0 111223444444
Q ss_pred EEe-ccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 244 CIS-SSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 244 ~i~-~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
.|+ ++++..++.||+++.|+.++++-+. +.+++++...
T Consensus 132 ~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~--v~~~~v~~G~ 170 (182)
T PRK10502 132 WLAADVFVAPGVTIGSGAVVGARSSVFKS--LPANTICRGN 170 (182)
T ss_pred EEcCCCEEcCCCEECCCCEECCCCEEecc--cCCCcEEECC
Confidence 442 2344444444444444444444332 4455554443
No 192
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=9.9e-09 Score=92.63 Aligned_cols=71 Identities=25% Similarity=0.376 Sum_probs=56.1
Q ss_pred ECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECC
Q 022113 204 IGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCD 276 (302)
Q Consensus 204 i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~ 276 (302)
+.. +.|.+.++||++|.|++++.|. +++|+++|.|++++.|.+|++.+++.|++++.| .+++|+++|+|++
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i-~~sIi~~~~~ig~ 324 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYI-GDSIIGENCKIGA 324 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEE-eeeEEcCCcEECC
Confidence 445 6666677777777777777776 477788888888888999999999999998888 6688888888885
No 193
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.88 E-value=3.1e-09 Score=79.83 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=75.6
Q ss_pred cccccCceEec---ceEEcCCcEECCCCEECC------------CcEECCCCEECCCcEEeceEEccCCEECCCcEEec-
Q 022113 184 LKLATGANIVG---NVLVHESAQIGEGCLIGP------------DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISS- 247 (302)
Q Consensus 184 ~~~~~~~~i~~---~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~- 247 (302)
..+.+++.|++ ++.+|..|.++.+++|.| +..||+++.|+++|++.-..|+..+++|.+++|++
T Consensus 40 tIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrr 119 (184)
T KOG3121|consen 40 TIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRR 119 (184)
T ss_pred EEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccceeEcCc
Confidence 44667788876 677888888888888876 45899999999999999999999999999998865
Q ss_pred cEECCCCEECCCcEEccCcEECCCcEECCc
Q 022113 248 SIIGWHSTVGQWARVENMTILGEDVHVCDE 277 (302)
Q Consensus 248 ~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~ 277 (302)
|++.+.|.|.+++.+.+.+.+.+.++++.+
T Consensus 120 CVlkdCc~ild~tVlPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 120 CVLKDCCRILDDTVLPPETLVPPYSTIGGN 149 (184)
T ss_pred eEhhhheeccCCcccCcccccCCceEEcCC
Confidence 777777777777777777777776666654
No 194
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.87 E-value=3.3e-08 Score=91.84 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=107.1
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccC---CCCcEEEEeCCeec-CcC-HHHHHHHH---HHcCCcEEEEEEeCCCCCCcc
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDD---TGEPFFVLNSDVIS-EYP-FAEMIEFH---KAHGGEASIMVTKVDEPSKYG 87 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~---~~~~~lv~~gD~l~-~~~-l~~~~~~~---~~~~~~~~l~~~~~~~~~~~g 87 (302)
-.++.|+...+||.||..|.-++... .++.++|+++|+++ +.+ |.+.++.. .+.+.-+|+.+.|..+.+.||
T Consensus 80 ~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt~PeTgyG 159 (478)
T PRK15460 80 ENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYG 159 (478)
T ss_pred ccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCCC
Confidence 37899999999999998887766331 12467889999976 333 55443332 234667888888888889999
Q ss_pred eEEEeCCC--------CcEEEEEecCCCC--------CCCeEEEEEEEeCHhhH-hhccCC----------------CC-
Q 022113 88 VVVMEEST--------GKVEKFVEKPKLF--------VGNKINAGIYLLNPAVL-DRIELR----------------PT- 133 (302)
Q Consensus 88 ~v~~d~~~--------~~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l-~~l~~~----------------~~- 133 (302)
++..++.- .+|.+|.|||+.. ...+||+|||+|+.+.+ +.+..- ..
T Consensus 160 YI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~~~~~~~~~~ 239 (478)
T PRK15460 160 YIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDL 239 (478)
T ss_pred eEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHHHHHhccCcc
Confidence 99986421 2699999999753 24689999999997654 444210 00
Q ss_pred C---ccccchH----------HHHhcCcEEEEEecCeeEecCChHHHHHHH
Q 022113 134 S---IEKEVFP----------KIALEGKLFAMVLPGFWMDIGQPRDYITGL 171 (302)
Q Consensus 134 ~---~~~~~~~----------~l~~~~~v~~~~~~g~~~digt~~~~~~a~ 171 (302)
. +..+.|. .+.+..++.+.+.+-.|.|+|++.++.+..
T Consensus 240 ~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 240 DFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred cceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 0 0012222 233446788888888899999999987753
No 195
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.87 E-value=2.1e-08 Score=78.63 Aligned_cols=51 Identities=18% Similarity=0.178 Sum_probs=39.0
Q ss_pred EEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc----CCeE---ecCcccccc
Q 022113 244 CISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN----GGVV---LPHKEIKSS 294 (302)
Q Consensus 244 ~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~----~~~v---~~~~~~~~~ 294 (302)
...+++|+++|+||+++.|.+++.||+++.|+++++|. ++++ .|++.++..
T Consensus 70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~i~~~ 127 (145)
T cd03349 70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKVIRYR 127 (145)
T ss_pred ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEeehhh
Confidence 34678899999999999998889999999999988854 4434 366666554
No 196
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.86 E-value=1.8e-08 Score=74.97 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=6.8
Q ss_pred ceEEccCCEECCCcEE
Q 022113 230 RCTVMRGVRIKKHACI 245 (302)
Q Consensus 230 ~~~i~~~~~i~~~~~i 245 (302)
.++|+++|.|++++.+
T Consensus 58 ~~~Ig~~~~ig~~~~i 73 (109)
T cd04647 58 PIVIGDDVWIGANVVI 73 (109)
T ss_pred CeEECCCCEECCCCEE
Confidence 3444444444444433
No 197
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.85 E-value=7.5e-08 Score=79.33 Aligned_cols=96 Identities=19% Similarity=0.248 Sum_probs=45.2
Q ss_pred ceEEcCCcEECCCCEEC--CCcEECCCCEECCCcEEeceEE--------ccCCEE--------CCCcEEec-cEECCCCE
Q 022113 195 NVLVHESAQIGEGCLIG--PDVAVGPGCVVESGVRLSRCTV--------MRGVRI--------KKHACISS-SIIGWHST 255 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i--------~~~~~i--------~~~~~i~~-~~i~~~~~ 255 (302)
.+.+|+++.|++++.|. +++.||++|.|++++.|.+... ..+..+ ...++|++ +.++.++.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 44445555555555544 2456666666666665542100 000000 01233422 44555555
Q ss_pred ECCCcEEccCcEECCCcEECCceEEcCCeE---ecCcccc
Q 022113 256 VGQWARVENMTILGEDVHVCDEIYSNGGVV---LPHKEIK 292 (302)
Q Consensus 256 i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v---~~~~~~~ 292 (302)
|.++++|+++++|++++.|... ++++++ .|++.++
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik 182 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIK 182 (192)
T ss_pred EcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEe
Confidence 5555555555666666666553 444443 3555544
No 198
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.82 E-value=1.6e-08 Score=84.74 Aligned_cols=70 Identities=17% Similarity=0.248 Sum_probs=40.5
Q ss_pred CcEECCCCEECCC------cEECCCCEECCCcEEe---------ceEEccCCEECCCc-EEeccEECCCCEECCCcEEcc
Q 022113 201 SAQIGEGCLIGPD------VAVGPGCVVESGVRLS---------RCTVMRGVRIKKHA-CISSSIIGWHSTVGQWARVEN 264 (302)
Q Consensus 201 ~~~i~~~~~i~~~------~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~ 264 (302)
|+.++++|.|..+ ++||.+|-||.++.|. ..+|++||-||+++ .+.+..+|++|.|++++.|..
T Consensus 138 gA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 138 GAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred CcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeC
Confidence 4444555544443 3444444444444442 46788888888877 446677777777776666655
Q ss_pred CcEECC
Q 022113 265 MTILGE 270 (302)
Q Consensus 265 ~~~i~~ 270 (302)
++.|..
T Consensus 218 ~tki~~ 223 (271)
T COG2171 218 DTKIYD 223 (271)
T ss_pred CcceEE
Confidence 544443
No 199
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.81 E-value=2.6e-08 Score=92.53 Aligned_cols=81 Identities=15% Similarity=0.285 Sum_probs=67.7
Q ss_pred CCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECC----------------C---CEECCCc
Q 022113 200 ESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGW----------------H---STVGQWA 260 (302)
Q Consensus 200 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~ 260 (302)
+++.+ .++.|.+ ++|+++|.|+ ++.|.+|+|+++|.|+++|+|.++++.. + +.|++++
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 55666 4666755 9999999999 9999999999999999999999988855 3 3899999
Q ss_pred EEccCcEECCCcEECCceEEcCCe
Q 022113 261 RVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 261 ~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
++. +++|+++++||+++.+.+..
T Consensus 381 ~i~-~~vI~~~v~Ig~~~~i~~~~ 403 (436)
T PLN02241 381 KIR-NAIIDKNARIGKNVVIINKD 403 (436)
T ss_pred EEc-ceEecCCCEECCCcEEeccc
Confidence 994 68899999999998886443
No 200
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.72 E-value=1.2e-08 Score=77.33 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=72.8
Q ss_pred ccccccCceEecceEEcCCcEECCCCEECC---CcEECCCCEECCCcEEec--------------eEEccCCEECCCcEE
Q 022113 183 SLKLATGANIVGNVLVHESAQIGEGCLIGP---DVAVGPGCVVESGVRLSR--------------CTVMRGVRIKKHACI 245 (302)
Q Consensus 183 ~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i 245 (302)
.+.+.-.+.|++++.++++|.|.+.+++.. .-+||.++.|++.++|.+ .+||.+-...-+|+.
T Consensus 14 ~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s 93 (190)
T KOG4042|consen 14 SAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKS 93 (190)
T ss_pred ceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechh
Confidence 344444556677777777777777666543 448888888888887743 467777777667777
Q ss_pred eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEecC
Q 022113 246 SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPH 288 (302)
Q Consensus 246 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~~ 288 (302)
....+|+.-.|+..+.+++++.+.++|.||+++.+.....+|.
T Consensus 94 ~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpe 136 (190)
T KOG4042|consen 94 SAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPE 136 (190)
T ss_pred hhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCC
Confidence 7777777777777777777777777777777766554444443
No 201
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.61 E-value=1.9e-07 Score=74.83 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=51.7
Q ss_pred CceEecceEEcCCcEECC--CCEECCCcEECCCCEECCCcEEe---------ceEEccCCEECCCcEE-eccEECCCCEE
Q 022113 189 GANIVGNVLVHESAQIGE--GCLIGPDVAVGPGCVVESGVRLS---------RCTVMRGVRIKKHACI-SSSIIGWHSTV 256 (302)
Q Consensus 189 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~---------~~~i~~~~~i~~~~~i-~~~~i~~~~~i 256 (302)
+..|+|.+.||++..|.+ +.+|++-+.||++|.|-.+++|. +=.|++++.||+++.| ++-.||+++.|
T Consensus 67 gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akI 146 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKI 146 (194)
T ss_pred ceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEE
Confidence 344444444444444433 34566666666666666666664 2379999999999887 77889999999
Q ss_pred CCCcEEcc
Q 022113 257 GQWARVEN 264 (302)
Q Consensus 257 ~~~~~i~~ 264 (302)
|+++.+..
T Consensus 147 GA~sVVlk 154 (194)
T COG1045 147 GAGSVVLK 154 (194)
T ss_pred CCCceEcc
Confidence 99998855
No 202
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=5.8e-07 Score=74.34 Aligned_cols=158 Identities=19% Similarity=0.254 Sum_probs=92.8
Q ss_pred hcCCcEEEEEec--CCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEeCC--CCC
Q 022113 10 AKLGIKIICSQE--TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTKVD--EPS 84 (302)
Q Consensus 10 ~~~g~~i~~~~~--~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~~~--~~~ 84 (302)
.+.+.+..++.. .+-.+|+.+|..|++.+. +.|++++||+++..+ ++.+++ .....+++..... +..
T Consensus 66 ~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~~~e~l~~----a~~~~li~d~~~~~~~~~ 137 (239)
T COG1213 66 KKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPSILERLLE----APGEGLIVDRRPRYVGVE 137 (239)
T ss_pred hcCCcceEEEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHHHHHHHHh----CcCCcEEEeccccccccC
Confidence 335555555555 456677999999999995 579999999999876 333333 2222222222110 111
Q ss_pred CcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhcc-CCCCCccccchHHHHhcCcEEEEEec-----Cee
Q 022113 85 KYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIE-LRPTSIEKEVFPKIALEGKLFAMVLP-----GFW 158 (302)
Q Consensus 85 ~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~-~~~~~~~~~~~~~l~~~~~v~~~~~~-----g~~ 158 (302)
.-..+..+ +|++..+..+-. ..+-.++|++.|++++|..+. ...... .--+....+.-.+.....+ .+|
T Consensus 138 ea~kv~~e--~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~di~~~g~~w 212 (239)
T COG1213 138 EATKVKDE--GGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERS-EYDYREVEKEAGLPFTEVDIHVDGLFW 212 (239)
T ss_pred ceeEEEec--CCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhh-hHHHHHHHHHhCCceEEeeccccCcee
Confidence 11233333 688888776644 235678999999999886442 111100 0112333333222222222 589
Q ss_pred EecCChHHHHHHHHHHHHhhcc
Q 022113 159 MDIGQPRDYITGLRLYLDSLRK 180 (302)
Q Consensus 159 ~digt~~~~~~a~~~~l~~~~~ 180 (302)
+++.+||++.++.+.+......
T Consensus 213 ~EVDtpeDl~~ar~~~~~~~~k 234 (239)
T COG1213 213 MEVDTPEDLERARKYLVPNIKK 234 (239)
T ss_pred EecCCHHHHHHHHHHHHHHHHh
Confidence 9999999999998877655443
No 203
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.59 E-value=1.9e-07 Score=91.15 Aligned_cols=67 Identities=16% Similarity=0.269 Sum_probs=41.5
Q ss_pred CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEcCCe
Q 022113 213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGV 284 (302)
Q Consensus 213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~ 284 (302)
..+||++|.|+++|.+.+..+. +....++..+||++|.||+++.|.+++.||++++|++++.+..+.
T Consensus 131 li~IG~~~~I~~~v~l~~~~~~-----~~~l~~g~i~IG~~~~IG~~s~I~~g~~Igd~a~vgagS~V~~g~ 197 (695)
T TIGR02353 131 LLTIGAGTIVRKEVMLLGYRAE-----RGRLHTGPVTLGRDAFIGTRSTLDIDTSIGDGAQLGHGSALQGGQ 197 (695)
T ss_pred ceEECCCCEECCCCEEEcccCC-----CCceeecCcEECCCcEECCCCEEcCCCEECCCCEECCCCEecCCc
Confidence 3446666666666665432222 112233456777777777777777777777777777777765543
No 204
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.58 E-value=2.7e-07 Score=75.94 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=62.2
Q ss_pred ceEEcCCcEECCCCEE--CCCcEECCCCEECCCcEEec-eEEccCCEECC--CcEEeccEECCCCEECCCcEEccCcEEC
Q 022113 195 NVLVHESAQIGEGCLI--GPDVAVGPGCVVESGVRLSR-CTVMRGVRIKK--HACISSSIIGWHSTVGQWARVENMTILG 269 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~--~~~i~~~~i~~~~~i~~~~~i~~~~~i~ 269 (302)
...++.++.++.++.+ ..+.+||.++.+++++.|.. ++.++...-.. ....+.++||++||||+++.|.++++||
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG 146 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIG 146 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEEC
Confidence 4445555555555542 23445666666666666652 23232222222 2223469999999999999999999999
Q ss_pred CCcEECCceEEcC----CeE---ecCcccc
Q 022113 270 EDVHVCDEIYSNG----GVV---LPHKEIK 292 (302)
Q Consensus 270 ~~~~v~~~~~v~~----~~v---~~~~~~~ 292 (302)
+++.||+++++.. .++ .|++.++
T Consensus 147 ~gavigagsVVtkdvp~~~iv~G~Pa~vir 176 (190)
T COG0110 147 EGAVIGAGSVVTKDVPPYGIVAGNPARVIR 176 (190)
T ss_pred CCcEEeeCCEEeCccCCCeEEeCCcceEEE
Confidence 9999999988653 333 4666553
No 205
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.57 E-value=1.5e-07 Score=91.81 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=54.5
Q ss_pred eEEcCCcEECCCCEECCC-------cEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEE
Q 022113 196 VLVHESAQIGEGCLIGPD-------VAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTIL 268 (302)
Q Consensus 196 ~~i~~~~~i~~~~~i~~~-------~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i 268 (302)
.+...+++||++|.|.+. +.||++|.|+++|.|... ..++.. -.+++++||++|.||++++|.+++.|
T Consensus 592 ~lr~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h-~~~~~~----~~~~~v~IG~~~~IG~~a~V~~g~~I 666 (695)
T TIGR02353 592 ILRLLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTH-LFEDRV----MKSDTVTIGDGATLGPGAIVLYGVVM 666 (695)
T ss_pred HHHHCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEec-cccccc----cccCCeEECCCCEECCCCEECCCCEE
Confidence 333444444444444432 466666666666665431 111111 12456778888888888888888888
Q ss_pred CCCcEECCceEEcCCeEecCcc
Q 022113 269 GEDVHVCDEIYSNGGVVLPHKE 290 (302)
Q Consensus 269 ~~~~~v~~~~~v~~~~v~~~~~ 290 (302)
|+++.|++++++..+..+|+++
T Consensus 667 Gd~a~Ig~~SvV~~g~~vp~~s 688 (695)
T TIGR02353 667 GEGSVLGPDSLVMKGEEVPAHT 688 (695)
T ss_pred CCCCEECCCCEEcCCcccCCCC
Confidence 8888888887777666566544
No 206
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.54 E-value=1.4e-07 Score=71.64 Aligned_cols=101 Identities=23% Similarity=0.280 Sum_probs=76.6
Q ss_pred ceEEcCCcEECCCCEECCCcEECCCCEECCCcEEe----ceEEccCCEECCCcEEec--------------cEECCC---
Q 022113 195 NVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLS----RCTVMRGVRIKKHACISS--------------SIIGWH--- 253 (302)
Q Consensus 195 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~--- 253 (302)
.+.|.|++.|..-+-|.++++|+++|++.+.+++. .-+||+|+.|.++++|.+ -+||.+
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 35566777777777888888999999999988875 678999999999888843 344444
Q ss_pred --------CEECCCcEEccCcEECCCcEECCceEEcCCeE-ecCccccccc
Q 022113 254 --------STVGQWARVENMTILGEDVHVCDEIYSNGGVV-LPHKEIKSSI 295 (302)
Q Consensus 254 --------~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v-~~~~~~~~~~ 295 (302)
..+|+...|+..+.+|+++.+.+|+.+++++. ..++.+++|.
T Consensus 88 eVgc~s~A~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent 138 (190)
T KOG4042|consen 88 EVGCKSSAKKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENT 138 (190)
T ss_pred EeechhhhhhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcc
Confidence 34566666777788888888888888888884 6777777763
No 207
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3e-07 Score=78.00 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=30.8
Q ss_pred CcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEEC
Q 022113 213 DVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVC 275 (302)
Q Consensus 213 ~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~ 275 (302)
+++|-+.+++.+.++|+ |..|+.+++||+|+++..|+|-+++.|.+++.+.+ ++||-++.||
T Consensus 288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~-sIigw~s~iG 350 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLH-SIIGWKSSIG 350 (407)
T ss_pred eeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEe-eeeccccccc
Confidence 33333333333333333 33455555666666666666666666666555532 4445444444
No 208
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.41 E-value=2e-06 Score=67.46 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=24.8
Q ss_pred ECCCCEECCCcEEccCcEECCCcEECCceEEcCCeEec
Q 022113 250 IGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLP 287 (302)
Q Consensus 250 i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~~ 287 (302)
...++.||++++|+.+++|..+++|+++++++++++|.
T Consensus 70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 34456666666666666666666666666666666544
No 209
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.36 E-value=9.2e-07 Score=71.98 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=52.4
Q ss_pred EcCCcEECCCCEECC--CcEECCCCEECCCcEEeceEEccCCEECC---CcEEeccEECCCCEECCCcEEccCcEECCCc
Q 022113 198 VHESAQIGEGCLIGP--DVAVGPGCVVESGVRLSRCTVMRGVRIKK---HACISSSIIGWHSTVGQWARVENMTILGEDV 272 (302)
Q Consensus 198 i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~ 272 (302)
|+|.++||.|-.+.- +++||.-++||+++. |.+++.+|. ++-=+.=.||+|++||+++.|.+++.||+|+
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vS-----ilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGega 225 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVS-----ILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGA 225 (269)
T ss_pred ccchhhcccceeeccccceeecceeEecccee-----eecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCc
Confidence 556666666665542 335555555554443 344444442 2222335799999999999999999999999
Q ss_pred EECCceEEc
Q 022113 273 HVCDEIYSN 281 (302)
Q Consensus 273 ~v~~~~~v~ 281 (302)
+|++|+++-
T Consensus 226 vIaAGsvV~ 234 (269)
T KOG4750|consen 226 VIAAGSVVL 234 (269)
T ss_pred EEeccceEE
Confidence 999998854
No 210
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.34 E-value=6.2e-07 Score=77.22 Aligned_cols=95 Identities=16% Similarity=0.157 Sum_probs=62.2
Q ss_pred eEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECC
Q 022113 191 NIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGE 270 (302)
Q Consensus 191 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~ 270 (302)
....+-..-|++.+-.++.+.+-..+|.+|.||++ ++||.+|+|++++.|.+|++..+.+++.++.| ..+++|-
T Consensus 248 ~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~-----vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i-~s~ivg~ 321 (371)
T KOG1322|consen 248 PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGPN-----VVIGPRVRIEDGVRLQDSTILGADYYETHSEI-SSSIVGW 321 (371)
T ss_pred cccCCccccCCccccccEeeccccccCCccEECCC-----ceECCCcEecCceEEEeeEEEccceechhHHH-Hhhhccc
Confidence 33333334444555444555444455544444443 56788899999999999999999888888887 5566666
Q ss_pred CcEECCceEEcCCeEecCccc
Q 022113 271 DVHVCDEIYSNGGVVLPHKEI 291 (302)
Q Consensus 271 ~~~v~~~~~v~~~~v~~~~~~ 291 (302)
++.||.++.+...++++.+++
T Consensus 322 ~~~IG~~~~id~~a~lG~nV~ 342 (371)
T KOG1322|consen 322 NVPIGIWARIDKNAVLGKNVI 342 (371)
T ss_pred cccccCceEEecccEeccceE
Confidence 677776666666666665554
No 211
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.18 E-value=1.7e-05 Score=65.17 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred CCCCEECCCcEEccCcEECCCcEECCceEEcCCeEe
Q 022113 251 GWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVL 286 (302)
Q Consensus 251 ~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~~v~ 286 (302)
...+.||++++|+.+++|.++++||+++++++++++
T Consensus 122 ~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVV 157 (190)
T COG0110 122 AGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVV 157 (190)
T ss_pred cCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEE
Confidence 335889999999999999999999999999888874
No 212
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=98.07 E-value=1.9e-05 Score=72.67 Aligned_cols=80 Identities=18% Similarity=0.341 Sum_probs=52.3
Q ss_pred CcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCC--CCCcceEEEeCCCC---------cEEEEEecCCCC---
Q 022113 44 EPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEESTG---------KVEKFVEKPKLF--- 108 (302)
Q Consensus 44 ~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~v~~d~~~~---------~v~~~~ekp~~~--- 108 (302)
.-++|..+|++ ...+ ...+. + .+++++++..+.+. .+..|++.+|+ ++ .+.+|..||...
T Consensus 54 pGv~V~s~D~vl~~~~-~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~-~~~~~~~~~~~~v~~~L~KpS~eem~ 128 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPD-DPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDR-QGPDEEDLEYREVKDFLQKPSEEEMR 128 (414)
T ss_pred cceEEEecccccccCc-cccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCC-CCCccccchhhhHHHhhcCCCHHHHH
Confidence 36899999953 3332 11111 2 12567777776542 35579999987 56 688899998542
Q ss_pred --------CCCeEEEEEEEeCHhhHhhc
Q 022113 109 --------VGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 109 --------~~~~~~~Giy~~~~~~l~~l 128 (302)
..-..++|++.|+.++.+.|
T Consensus 129 ~~~av~~~~~~~ldsG~~~~s~~~~e~L 156 (414)
T PF07959_consen 129 ASGAVLPDGNVLLDSGIVFFSSKAVESL 156 (414)
T ss_pred hCCcccCCCcccccccceeccHHHHHHH
Confidence 13356899999998877766
No 213
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.93 E-value=8.7e-06 Score=47.54 Aligned_cols=32 Identities=31% Similarity=0.714 Sum_probs=14.1
Q ss_pred EEcCCcEECCCCEECCCcEECCCCEECCCcEE
Q 022113 197 LVHESAQIGEGCLIGPDVAVGPGCVVESGVRL 228 (302)
Q Consensus 197 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 228 (302)
.|+++++|++++.|.+++.||++|.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444444444444444444444443
No 214
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.87 E-value=7.9e-05 Score=61.17 Aligned_cols=70 Identities=19% Similarity=0.341 Sum_probs=42.8
Q ss_pred cEECCCCEECCCcEEeceEEccCCEECCCcEE-eccEECCCCEECCCcEEccCcEECCCcEECCceEEcCC
Q 022113 214 VAVGPGCVVESGVRLSRCTVMRGVRIKKHACI-SSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGG 283 (302)
Q Consensus 214 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~~~ 283 (302)
.+++....+|+++.|...++..+++|+.+|.+ ++.+.+.+++||.++.|....++...-.+|+++.|..+
T Consensus 34 ~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gdLdig~dV~Iegg 104 (277)
T COG4801 34 GVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGDLDIGADVIIEGG 104 (277)
T ss_pred eeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecccccccceEEecC
Confidence 36666666777777776666677777777776 44666666666666666555444444444444444433
No 215
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.84 E-value=5.6e-05 Score=62.02 Aligned_cols=60 Identities=13% Similarity=0.183 Sum_probs=27.2
Q ss_pred ECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEccCcEECCCcEECCceEEc
Q 022113 222 VESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSN 281 (302)
Q Consensus 222 i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v~ 281 (302)
||+++.++-.++++...+|+++.|.+.++..+++|+.||++..++.++.++.||+++.|.
T Consensus 25 IG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~ 84 (277)
T COG4801 25 IGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIK 84 (277)
T ss_pred EcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceee
Confidence 333333333344444444444444444444444444444444444444444444444443
No 216
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.83 E-value=1.5e-05 Score=46.45 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=13.3
Q ss_pred EECCCCEECCCcEEccCcEECCCcEECCceEE
Q 022113 249 IIGWHSTVGQWARVENMTILGEDVHVCDEIYS 280 (302)
Q Consensus 249 ~i~~~~~i~~~~~i~~~~~i~~~~~v~~~~~v 280 (302)
.|+++++|++++.|.+++.||+++.|++++.+
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 33444444444444444444444444444433
No 217
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=97.82 E-value=0.00045 Score=58.06 Aligned_cols=135 Identities=17% Similarity=0.135 Sum_probs=87.7
Q ss_pred CCCChHHHHHcHhhhccC--CCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEE
Q 022113 24 PLGTAGPLALARDKLIDD--TGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVE 99 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~--~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~ 99 (302)
..|+.++++.+++++... ..+.++++.||. +...++.++++.+.+.+.+.++.+.+..+...++....++ +....
T Consensus 77 ~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (223)
T cd02513 77 TASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEFHRFPWRALGLDDN-GLEPV 155 (223)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEecCcCcHHheeeccC-Cceec
Confidence 458899999999887431 125789999999 4556699999999887778777777765554444443221 11222
Q ss_pred EEEec--C---CCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEecC-eeEecCChHHHHHHHH
Q 022113 100 KFVEK--P---KLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLPG-FWMDIGQPRDYITGLR 172 (302)
Q Consensus 100 ~~~ek--p---~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~g-~~~digt~~~~~~a~~ 172 (302)
.+.++ + +.+.....++|+|+++++.+.... ..+ .+++..+..+. .-+||++++|+..++.
T Consensus 156 ~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~---~~~----------g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 156 NYPEDKRTRRQDLPPAYHENGAIYIAKREALLESN---SFF----------GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred cCcccccCCcCCChhHeeECCEEEEEEHHHHHhcC---Ccc----------CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 22221 1 122345678899999999774421 111 46666666654 5799999999977754
No 218
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.76 E-value=0.00035 Score=69.88 Aligned_cols=124 Identities=16% Similarity=0.188 Sum_probs=76.9
Q ss_pred cEEEEeCCeecCcC--HHHHHHHHHHcCCcEEEEEEeCCC--CCCcceEEEeCCC-CcEEEEEecCCCC--------CCC
Q 022113 45 PFFVLNSDVISEYP--FAEMIEFHKAHGGEASIMVTKVDE--PSKYGVVVMEEST-GKVEKFVEKPKLF--------VGN 111 (302)
Q Consensus 45 ~~lv~~gD~l~~~~--l~~~~~~~~~~~~~~~l~~~~~~~--~~~~g~v~~d~~~-~~v~~~~ekp~~~--------~~~ 111 (302)
.++|..||.+..++ +.. ..+++++......+. .+..|++..++.. +++..|..||+.. ..-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 68999999876554 221 123455555544432 3567999998631 5788899999642 234
Q ss_pred eEEEEEEEeCHhhHhhccCC----------CCCccccchHHH----------HhcCcEEEEEe-cCeeEecCChHHHHHH
Q 022113 112 KINAGIYLLNPAVLDRIELR----------PTSIEKEVFPKI----------ALEGKLFAMVL-PGFWMDIGQPRDYITG 170 (302)
Q Consensus 112 ~~~~Giy~~~~~~l~~l~~~----------~~~~~~~~~~~l----------~~~~~v~~~~~-~g~~~digt~~~~~~a 170 (302)
+.++|+|+|+.++.+.|-.. ..++..||...| ++..++....+ .+.|+.+||-+.|+..
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~~ 307 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELISS 307 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhcC
Confidence 78999999999888766321 112233333332 12345555555 4589999999888864
Q ss_pred HHHH
Q 022113 171 LRLY 174 (302)
Q Consensus 171 ~~~~ 174 (302)
...+
T Consensus 308 ~~~~ 311 (974)
T PRK13412 308 TLAV 311 (974)
T ss_pred chhH
Confidence 4333
No 219
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=97.76 E-value=0.0021 Score=54.85 Aligned_cols=156 Identities=14% Similarity=0.137 Sum_probs=91.8
Q ss_pred hcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCC--
Q 022113 10 AKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSK-- 85 (302)
Q Consensus 10 ~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-- 85 (302)
+.+|+++....+..+.||..... +...+.....+.++++.||. +.+ ..+.++++.+.+...+++.+..+..++..
T Consensus 56 ~~~g~~~v~~~~~~~~Gt~r~~~-~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~ 134 (238)
T TIGR00466 56 QKFGIEVCMTSKHHNSGTERLAE-VVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAF 134 (238)
T ss_pred HHcCCEEEEeCCCCCChhHHHHH-HHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHcc
Confidence 34566544333444556555443 33333211125678899999 555 44889999886655677777777644211
Q ss_pred ---cceEEEeCCCCcEEEEEecCC----C-------CC--CCeEEEEEEEeCHhhHhhccCCCCCc---c--ccchHHHH
Q 022113 86 ---YGVVVMEESTGKVEKFVEKPK----L-------FV--GNKINAGIYLLNPAVLDRIELRPTSI---E--KEVFPKIA 144 (302)
Q Consensus 86 ---~g~v~~d~~~~~v~~~~ekp~----~-------~~--~~~~~~Giy~~~~~~l~~l~~~~~~~---~--~~~~~~l~ 144 (302)
...+..+. +|+.+.|...+- . ++ ..+...|+|.|++++|..+..-..+- . -|-++.+.
T Consensus 135 ~p~~vk~v~~~-~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le 213 (238)
T TIGR00466 135 NPNAVKVVLDS-QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLY 213 (238)
T ss_pred CCCceEEEeCC-CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhh
Confidence 22333453 677766665411 1 11 14668999999999998764322211 1 12355566
Q ss_pred hcCcEEEEEecCe-eEecCChHHH
Q 022113 145 LEGKLFAMVLPGF-WMDIGQPRDY 167 (302)
Q Consensus 145 ~~~~v~~~~~~g~-~~digt~~~~ 167 (302)
.+.++.....+.. -..++||+|+
T Consensus 214 ~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 214 YGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cCCceEEEEeCCCCCCCCCChHHc
Confidence 6778887776655 4589999886
No 220
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.68 E-value=8.2e-05 Score=60.83 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=9.0
Q ss_pred EECCCcEECCCCEECCCcEE
Q 022113 209 LIGPDVAVGPGCVVESGVRL 228 (302)
Q Consensus 209 ~i~~~~~ig~~~~i~~~~~i 228 (302)
+||+-++||.+|.|..++.+
T Consensus 170 vigeTAvvg~~vSilH~Vtl 189 (269)
T KOG4750|consen 170 VIGETAVVGDNVSILHPVTL 189 (269)
T ss_pred eecceeEeccceeeecceee
Confidence 44444444444444444444
No 221
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.55 E-value=0.00014 Score=41.73 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=3.7
Q ss_pred EECCCcEECCce
Q 022113 267 ILGEDVHVCDEI 278 (302)
Q Consensus 267 ~i~~~~~v~~~~ 278 (302)
.||++|.|++++
T Consensus 19 ~igd~~~i~~g~ 30 (34)
T PF14602_consen 19 TIGDGVIIGAGV 30 (34)
T ss_dssp EE-TTEEE-TTE
T ss_pred EEcCCCEECCCC
Confidence 333333333333
No 222
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.25 E-value=0.019 Score=47.57 Aligned_cols=163 Identities=16% Similarity=0.182 Sum_probs=107.4
Q ss_pred cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEE-EeCCe-ecCc-CHHHHHHHHHHcCCcEEEEEEeCCCCC---
Q 022113 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFV-LNSDV-ISEY-PFAEMIEFHKAHGGEASIMVTKVDEPS--- 84 (302)
Q Consensus 11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv-~~gD~-l~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~--- 84 (302)
.+|.+.-.-....+.||-- +..+...+..+ ++.++| +.||. +.+. .+.++++...++..+++.+..+..++.
T Consensus 61 ~~G~~avmT~~~h~SGTdR-~~Ev~~~l~~~-~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~ 138 (247)
T COG1212 61 AFGGEAVMTSKDHQSGTDR-LAEVVEKLGLP-DDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAF 138 (247)
T ss_pred HhCCEEEecCCCCCCccHH-HHHHHHhcCCC-cceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhc
Confidence 3577776666677888855 44555555443 244554 79999 5554 488888888888788877777764321
Q ss_pred --CcceEEEeCCCCcEEEEEecCC-CC------CCCeEEEEEEEeCHhhHhhccCCCCCcccc-----chHHHHhcCcEE
Q 022113 85 --KYGVVVMEESTGKVEKFVEKPK-LF------VGNKINAGIYLLNPAVLDRIELRPTSIEKE-----VFPKIALEGKLF 150 (302)
Q Consensus 85 --~~g~v~~d~~~~~v~~~~ekp~-~~------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~-----~~~~l~~~~~v~ 150 (302)
.---+.+|. +|+-+.|...|- +. ...+.-.|+|.|+.++|..+..-..+.... -+..+-.+.++.
T Consensus 139 nPN~VKvV~d~-~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~ 217 (247)
T COG1212 139 NPNVVKVVLDK-EGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIH 217 (247)
T ss_pred CCCcEEEEEcC-CCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeE
Confidence 112344664 789999876642 11 245667899999999998764433333222 244566677888
Q ss_pred EEEecCee-EecCChHHHHHHHHHHHH
Q 022113 151 AMVLPGFW-MDIGQPRDYITGLRLYLD 176 (302)
Q Consensus 151 ~~~~~g~~-~digt~~~~~~a~~~~l~ 176 (302)
+...+... ..+.||+|+.++.+++.+
T Consensus 218 v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 218 VEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred EEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 88777554 899999999988776643
No 223
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=97.07 E-value=0.039 Score=46.51 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=96.2
Q ss_pred HHhhcCCcEEEEEec----CCCCCChHHHHHcHhhhcc-CCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEe
Q 022113 7 EFEAKLGIKIICSQE----TEPLGTAGPLALARDKLID-DTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 7 ~~~~~~g~~i~~~~~----~~~~Gt~~al~~a~~~i~~-~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~ 79 (302)
++..++|.++.+..- ....|+.++++.++..+.. ...+.++++.+|. +. ..++.++++.+.+.+.+..+.+.+
T Consensus 54 ~~a~~~g~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~ 133 (222)
T TIGR03584 54 EVAKSYGASVPFLRPKELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTS 133 (222)
T ss_pred HHHHHcCCEeEEeChHHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeec
Confidence 334557777665321 2356888999999988742 1135688899999 44 466999999998876788888877
Q ss_pred CCCCCCcceEEEeCCCCcEEEEEec----CCC--CCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEE
Q 022113 80 VDEPSKYGVVVMEESTGKVEKFVEK----PKL--FVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMV 153 (302)
Q Consensus 80 ~~~~~~~g~v~~d~~~~~v~~~~ek----p~~--~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~ 153 (302)
...+..+. ...++ +|+...+... +++ +.....+.++|+++++.|..- + ..+ .++...|.
T Consensus 134 ~~~~~~~~-~~~~~-~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~--~-~~~----------~~~~~~~~ 198 (222)
T TIGR03584 134 FAFPIQRA-FKLKE-NGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLES--G-PIF----------SPHSIPIV 198 (222)
T ss_pred cCCChHHh-eEECC-CCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhc--C-Ccc----------CCCcEEEE
Confidence 54322222 23333 5665554421 111 122356889999999987431 1 111 45666666
Q ss_pred ecC-eeEecCChHHHHHHHH
Q 022113 154 LPG-FWMDIGQPRDYITGLR 172 (302)
Q Consensus 154 ~~g-~~~digt~~~~~~a~~ 172 (302)
.+. ...||.+++|+.-|+.
T Consensus 199 m~~~~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 199 LPRHLVQDIDTLEDWERAEL 218 (222)
T ss_pred eCccceeCCCCHHHHHHHHH
Confidence 654 5799999999988765
No 224
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=96.96 E-value=0.02 Score=52.17 Aligned_cols=129 Identities=10% Similarity=0.055 Sum_probs=83.6
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEE
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFV 102 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ 102 (302)
.+..+++++++..+.. +.+++..+|. +.+.+ +.++++.+.+. +.++...+..++.+|+...++. ..+. ..
T Consensus 81 ~~r~~SV~~gL~~l~~---d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~pv~Dtik~~~~tldR--~~l~-~~ 152 (378)
T PRK09382 81 ATRQESVRNALEALDS---EYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPALPVADTLKRANETVDR--EGLK-LI 152 (378)
T ss_pred chHHHHHHHHHHhcCC---CeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEEEeccCcEEeeeEcCc--ccEE-EE
Confidence 3467889999998853 5677888887 55544 78888776543 5778888888888888666653 3443 44
Q ss_pred ecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHh-cCcEEEEEecCeeEecCChHHHHHHHHHH
Q 022113 103 EKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIAL-EGKLFAMVLPGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 103 ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~-~~~v~~~~~~g~~~digt~~~~~~a~~~~ 174 (302)
++|+.+.... +++... ....+ .+-...+.. ..++..+.-+..|+++++|+|+..++..+
T Consensus 153 QTPQ~f~~~~-----------l~~a~~-~~~~~-TDd~sl~~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l 212 (378)
T PRK09382 153 QTPQLSRTKT-----------LKAAAD-GRGDF-TDDSSAAEAAGGKVALVEGSEDLHKLTYKEDLKMADLLL 212 (378)
T ss_pred ECCCCCCHHH-----------HHHHHh-CCCCc-ccHHHHHHHcCCcEEEEECCCcccCCCCHHHHHHHHHHh
Confidence 8886652211 111111 12222 232333333 35777777788999999999999987755
No 225
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=96.60 E-value=0.019 Score=48.00 Aligned_cols=133 Identities=14% Similarity=0.110 Sum_probs=80.9
Q ss_pred CChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEe
Q 022113 26 GTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 103 (302)
Q Consensus 26 Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~e 103 (302)
+..++++.++..+. ..+.++++.||. +.+ ..+.++++.+.+. +.++++.+..+ ++...++ +|.+..+.+
T Consensus 76 ~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~~~----~v~~~~~-~g~~~~~~~ 146 (217)
T TIGR00453 76 TRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPVAD----TLKRVEA-DGFIVETVD 146 (217)
T ss_pred hHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEeccc----eEEEEcC-CCceeecCC
Confidence 35688999998772 126788899999 555 4588998987664 34445554432 4455553 577777766
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHhhccC----CCCCccccchHHHH-hcCcEEEEEecCeeEecCChHHHHHHHH
Q 022113 104 KPKLFVGNKINAGIYLLNPAVLDRIEL----RPTSIEKEVFPKIA-LEGKLFAMVLPGFWMDIGQPRDYITGLR 172 (302)
Q Consensus 104 kp~~~~~~~~~~Giy~~~~~~l~~l~~----~~~~~~~~~~~~l~-~~~~v~~~~~~g~~~digt~~~~~~a~~ 172 (302)
+.. -....+ .|.|+...+..+-. ....+ .+....+. ...++.....+...++|++|+++..+..
T Consensus 147 r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~~~~-~d~~~~~~~~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 147 REG---LWAAQT-PQAFRTELLKKALARAKEEGFEI-TDDASAVEKLGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred hHH---eEEEeC-CCcccHHHHHHHHHHHHhcCCCC-CcHHHHHHHcCCCeEEEecCccccccCCHHHHHHHHH
Confidence 432 123444 68999887754421 11111 11112222 2346666666666689999999987754
No 226
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=96.60 E-value=0.022 Score=48.03 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=79.7
Q ss_pred CChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEe
Q 022113 26 GTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVE 103 (302)
Q Consensus 26 Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~e 103 (302)
+.+++++.++..+.+ .+.++++.||. +.+ ..++++++.+.+.+ ..+++.+..++ +.. .++ +|.+..+.+
T Consensus 81 ~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~~--~~~--v~~-~g~~~~~~~ 151 (227)
T PRK00155 81 ERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPVKDT--IKR--SDD-GGGIVDTPD 151 (227)
T ss_pred hHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEecccc--EEE--EcC-CCceeecCC
Confidence 568999999998732 25778889998 554 55899999887653 44444444332 222 243 466655432
Q ss_pred cCCCCCCCeEEEEEEEeCHhhHhhccCC----CCCccccchHHHHh--cCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113 104 KPKLFVGNKINAGIYLLNPAVLDRIELR----PTSIEKEVFPKIAL--EGKLFAMVLPGFWMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 104 kp~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~~~~l~~--~~~v~~~~~~g~~~digt~~~~~~a~~~~l 175 (302)
... -.... +.+.|+.+.|..+-.. ...+ .+. ..++. ..++.....+..+++|++|+++..++..+.
T Consensus 152 r~~---~~~~~-~p~~f~~~~l~~~~~~~~~~~~~~-~d~-~~~~~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 152 RSG---LWAAQ-TPQGFRIELLREALARALAEGKTI-TDD-ASAVERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred hHH---heeee-CCccchHHHHHHHHHHHHhcCCCc-CcH-HHHHHHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 211 12223 3889998887654211 1111 111 12222 245666555666889999999988876553
No 227
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=96.27 E-value=0.033 Score=46.52 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=81.8
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEe
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVME 92 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d 92 (302)
.+.++.++ .+..++++.++..+.....+.++++.||+ +.+ ..++++++.+.+.+ ..+.+.+..+ +....|
T Consensus 70 ~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~~~----~~~~~~ 141 (218)
T cd02516 70 VVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPVTD----TIKRVD 141 (218)
T ss_pred CeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEeccc----cEEEec
Confidence 34555443 25578999999987411236678889998 555 44899999886554 3334444332 223344
Q ss_pred CCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCC----CCCccccchHHHHhc--CcEEEEEecCeeEecCChHH
Q 022113 93 ESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELR----PTSIEKEVFPKIALE--GKLFAMVLPGFWMDIGQPRD 166 (302)
Q Consensus 93 ~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~----~~~~~~~~~~~l~~~--~~v~~~~~~g~~~digt~~~ 166 (302)
+ +|.+.++.+..+ -..+.+. ++|+.+.|..+-.. ...+ .+. ..++.. .++....-+..-+||+||++
T Consensus 142 ~-~g~~~~~~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~-td~-~~~~~~~~~~v~~v~~~~~~~~i~t~~d 214 (218)
T cd02516 142 D-DGVVVETLDREK---LWAAQTP-QAFRLDLLLKAHRQASEEGEEF-TDD-ASLVEAAGGKVALVEGSEDNIKITTPED 214 (218)
T ss_pred C-CCceeecCChHH---hhhhcCC-CcccHHHHHHHHHHHHhcCCCc-CcH-HHHHHHcCCCeEEEecCcccccCCCHHH
Confidence 3 688888776532 2355667 88998888654211 1111 111 222222 45665554455679999999
Q ss_pred HH
Q 022113 167 YI 168 (302)
Q Consensus 167 ~~ 168 (302)
+.
T Consensus 215 l~ 216 (218)
T cd02516 215 LA 216 (218)
T ss_pred Hh
Confidence 84
No 228
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=95.74 E-value=0.097 Score=42.45 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=67.3
Q ss_pred EEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ec-CcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEE
Q 022113 15 KIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-IS-EYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVM 91 (302)
Q Consensus 15 ~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~ 91 (302)
.+.++.++ ...|++++++.++..... .+.++++.+|+ +. ...++++++.+.+...++++....
T Consensus 63 ~v~~v~~~~~~~g~~~si~~~l~~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~------------ 128 (188)
T TIGR03310 63 NITLVHNPQYAEGQSSSIKLGLELPVQ--SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPLYK------------ 128 (188)
T ss_pred CeEEEECcChhcCHHHHHHHHhcCCCC--CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEeecC------------
Confidence 34555543 346899999999883221 36899999999 44 455888888876655443322110
Q ss_pred eCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcC--cEEEEEe--cCeeEecCChHHH
Q 022113 92 EESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEG--KLFAMVL--PGFWMDIGQPRDY 167 (302)
Q Consensus 92 d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~--~v~~~~~--~g~~~digt~~~~ 167 (302)
++ +..+ .++++..+..+..... ..-+..++++. +.....+ .+.++|++||++|
T Consensus 129 ---~~--------~~~P---------l~~~~~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~nint~~d~ 185 (188)
T TIGR03310 129 ---GK--------RGHP---------VLFPRKLFPELLALTG---DTGGRQILRELPHEVKYVEVKDPGILFDIDTPEDY 185 (188)
T ss_pred ---Cc--------cCCC---------EEECHHHHHHHHhCCC---CccHHHHHHhCcccEEEEEcCCCceeECCCCHHHH
Confidence 11 0011 1488888877753211 11233333332 3333333 3568999999998
Q ss_pred H
Q 022113 168 I 168 (302)
Q Consensus 168 ~ 168 (302)
.
T Consensus 186 ~ 186 (188)
T TIGR03310 186 Q 186 (188)
T ss_pred h
Confidence 5
No 229
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=94.82 E-value=0.15 Score=40.26 Aligned_cols=61 Identities=20% Similarity=0.206 Sum_probs=44.2
Q ss_pred EEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEEEEEE
Q 022113 16 IICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEASIMVT 78 (302)
Q Consensus 16 i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~l~~~ 78 (302)
++++.++ ...|++++++.++..+.. .+.|+++++|+ +.+ ..+.++++.+.+++.++++...
T Consensus 60 ~~~v~~~~~~~G~~~sl~~a~~~~~~--~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 60 IKVVVDPEPGQGPLASLLAALSQLPS--SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp SEEEE-STSSCSHHHHHHHHHHTSTT--SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ceEEEeccccCChHHHHHHHHHhccc--CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 4445553 358999999999998732 38999999999 434 4489999998877776655443
No 230
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=93.66 E-value=0.8 Score=38.60 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=75.1
Q ss_pred hHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEEEecC
Q 022113 28 AGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKFVEKP 105 (302)
Q Consensus 28 ~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp 105 (302)
.++++.++..+.. .+.++++.||. +.+.+ +.++++.+.+.+.. +.+.+..+ .+...+ ++.++...++.
T Consensus 85 ~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~~d----ti~~~~--~~~~~~~i~r~ 154 (230)
T PRK13385 85 QESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEVKD----TVKRVK--DKQVIETVDRN 154 (230)
T ss_pred HHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEeccc----eEEEEc--CCeeEeccCHH
Confidence 4899999988743 24567778999 66555 88999988765432 33333322 222222 35554433321
Q ss_pred CCCCCCeEEEEEEEeCHhhHhhc-cC---CCCCccccchHHHHhcCcEEEEEecCeeEecCChHHHHHHHHHHH
Q 022113 106 KLFVGNKINAGIYLLNPAVLDRI-EL---RPTSIEKEVFPKIALEGKLFAMVLPGFWMDIGQPRDYITGLRLYL 175 (302)
Q Consensus 106 ~~~~~~~~~~Giy~~~~~~l~~l-~~---~~~~~~~~~~~~l~~~~~v~~~~~~g~~~digt~~~~~~a~~~~l 175 (302)
. -+..-+.+.|+.+.+... .. ....+..+.........++....-+...+.|.+|+|+..|...+.
T Consensus 155 ~----~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td~~~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 155 E----LWQGQTPQAFELKILQKAHRLASEQQFLGTDEASLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred H----HhhhcCCceeeHHHHHHHHHHHHhcCCCcCcHHHHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 1 112224778887766433 21 111222111122223456666665667789999999999876653
No 231
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=93.35 E-value=0.17 Score=46.80 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=25.3
Q ss_pred CcEECCCCEECCCcEEeceEEccCCEECCCcEEeccE
Q 022113 213 DVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSI 249 (302)
Q Consensus 213 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 249 (302)
++++..++.++++++|++|.++.++.||++|.|.++-
T Consensus 284 nSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~ 320 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVD 320 (414)
T ss_pred EeEecCCceECCCCEEEeeecCCCCEECCCCEEECCc
Confidence 6666677777777777777777777777777665543
No 232
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.88 E-value=0.69 Score=35.79 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=53.7
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEEEe
Q 022113 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 4 ~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~~~ 79 (302)
.+.++.+ .+..++|+..++..|-+.++..+.+.... +.++++..|.+...+ +..+++.+.+.+.++.+....
T Consensus 44 ~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~~---~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 44 ILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAKG---EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH--S---SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred ccccccc-cccccccccccccccccccccccccccce---eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 4445444 57889999998878999999999998864 677888999988777 889999998877766554443
No 233
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=92.69 E-value=1.3 Score=36.18 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=31.0
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHH
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKA 68 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~ 68 (302)
.|+..+++.++..... +.++++.+|+ +.+.+ +.++++.+.+
T Consensus 74 ~g~~~~i~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 74 PGPLAGILAGLKQART---EWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCCHHHHHHHHHhcCC---CeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 6888999999886542 6789999999 55544 7778776543
No 234
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=91.72 E-value=2.1 Score=35.08 Aligned_cols=124 Identities=16% Similarity=0.222 Sum_probs=76.9
Q ss_pred cEEEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCCCCCcceEE
Q 022113 14 IKIICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDEPSKYGVVV 90 (302)
Q Consensus 14 ~~i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~ 90 (302)
..++++..+ -..|.+.+++.+......+. +.++++.||+ +...++.++++.+.+.+ . .+.+. |
T Consensus 68 ~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v~p~-----~---- 133 (199)
T COG2068 68 LGVTVVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AVRPV-----Y---- 133 (199)
T ss_pred CCeEEEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhccccC-c---eeeee-----c----
Confidence 445555553 35699999999999986532 4788899999 66777999988886652 2 11111 0
Q ss_pred EeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEE--EEe-cCeeEecCChHHH
Q 022113 91 MEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFA--MVL-PGFWMDIGQPRDY 167 (302)
Q Consensus 91 ~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~--~~~-~g~~~digt~~~~ 167 (302)
.|.. .+=.+|++.+|..+.....+ .-...+++...... ... .+...||+||++|
T Consensus 134 ----~g~r----------------G~Pv~~~~~~~~~l~~l~GD---~G~r~ll~~~~~~~~~V~~~~g~llDVDTped~ 190 (199)
T COG2068 134 ----GGAR----------------GHPVLLSKDLFPALARLSGD---VGARQLLEEGGLPLVEVEVDAGVLLDVDTPEDL 190 (199)
T ss_pred ----cCCc----------------CCceeechhHHHHHhhcCCc---hhHHHHHHhcCcceEeeccCCceEecCCCHHHH
Confidence 1100 11245667777666533322 22455555544333 333 5788999999999
Q ss_pred HHHHHHH
Q 022113 168 ITGLRLY 174 (302)
Q Consensus 168 ~~a~~~~ 174 (302)
..+...+
T Consensus 191 ~~a~~~~ 197 (199)
T COG2068 191 ARAQDLL 197 (199)
T ss_pred HHHHHhh
Confidence 9887644
No 235
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=91.32 E-value=0.021 Score=49.50 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=72.4
Q ss_pred hhHHHHHhhcCCcEEEEEec-CCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCc------EE
Q 022113 2 LNFLKEFEAKLGIKIICSQE-TEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGE------AS 74 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~-~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~------~~ 74 (302)
++|+++.. .....+.++.| ..|..++++.....+... .+.+..-+||++...+.+.+++.|.+++.. ++
T Consensus 69 ~~~l~~~~-~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~---~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vD 144 (266)
T cd04180 69 QCYFEKIN-QKNSYVITFMQGKLPLKNDDDARDPHNKTK---CHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVD 144 (266)
T ss_pred HHHHHHcC-CCCCceEEEEeCCceEEeCCCCcccCCCCc---eeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccC
Confidence 45666633 22334555555 668899887763222111 145566799999988888899999998866 44
Q ss_pred EEEEeCCCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeC
Q 022113 75 IMVTKVDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLN 121 (302)
Q Consensus 75 l~~~~~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~ 121 (302)
.+++...||..+|++..++ ......+.+|+... ...|+.+..
T Consensus 145 N~la~v~DP~~lG~~~~~~-~~~~~kvv~K~~~d----~k~G~~~~~ 186 (266)
T cd04180 145 NLLVKVADPLFIGIAIQNR-KAINQKVVPKTRNE----ESGGYRIAN 186 (266)
T ss_pred ccCccccCHHHHHHHHHcC-CCEEEEEEECCCCC----CeEEEEEEe
Confidence 4455555777788877664 57888899998543 245665543
No 236
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=90.95 E-value=14 Score=34.73 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCCChHHHHHc-----HhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCC-CcceEEEeCCCCc
Q 022113 24 PLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-KYGVVVMEESTGK 97 (302)
Q Consensus 24 ~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~v~~d~~~~~ 97 (302)
|.|-|+-.... ++.+....-+.+.+.+.|.+...-=..++..+..++++.++=+++...+. +=|.+...+..-+
T Consensus 189 P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~lg~~~~~~~e~~~ev~~Kt~~d~kgG~l~~~dgk~~ 268 (469)
T PLN02474 189 PPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKILNHLIQNKNEYCMEVTPKTLADVKGGTLISYEGKVQ 268 (469)
T ss_pred eCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHHHHHHhcCCceEEEEeecCCCCCCccEEEEECCEEE
Confidence 55666643322 33333333467788899997533224477888888888887777654332 3355443211235
Q ss_pred EEEEEecCCCC--------CCCeEEEEEEEeCHhhHhhc
Q 022113 98 VEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 98 v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l 128 (302)
++++.+-|... .-...|++.++|+-++++.+
T Consensus 269 lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 269 LLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred EEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHH
Confidence 77777766421 23578999999998888765
No 237
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=89.83 E-value=1.4 Score=35.63 Aligned_cols=46 Identities=9% Similarity=-0.030 Sum_probs=35.1
Q ss_pred CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcC
Q 022113 22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~ 70 (302)
+...|++++|+.+++.+.. +.++++.+|+ +.+.+ +.++++.+.+..
T Consensus 70 ~~~~g~~~si~~al~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 117 (186)
T TIGR02665 70 ADFPGPLAGILAGLRWAGT---DWVLTVPCDTPFLPEDLVARLAAALEASD 117 (186)
T ss_pred CCCCCCHHHHHHHHHhcCC---CeEEEEecCCCcCCHHHHHHHHHHhhccC
Confidence 4468999999999998843 6899999999 66555 777777665433
No 238
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=88.50 E-value=4.7 Score=36.70 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=33.3
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCc
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGE 72 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~ 72 (302)
.|...+++.++..+.. +.++++.||+ +.+.+ +.++++.+.+.+++
T Consensus 78 ~G~~~si~~gl~~~~~---~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 78 QGPLSGILAGLEHADS---EYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred CChHHHHHHHHHhcCC---CcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 5888999999998743 6799999998 55554 77777766554444
No 239
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=88.30 E-value=2.9 Score=34.34 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=50.3
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV 77 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~ 77 (302)
+.++++.++.+..+.++..+...|-+.|+..+...... +-++++.+|...+.+ +.++++...+.+.++.+..
T Consensus 46 ~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~g---d~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 46 EVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAARG---DYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred HHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 34455555555446777777778999999999988753 667778999977665 7888887555555554443
No 240
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.26 E-value=1 Score=36.18 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=36.0
Q ss_pred CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHHHcCC
Q 022113 22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHKAHGG 71 (302)
Q Consensus 22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~ 71 (302)
....|++++++.++.++.. ..+.++++.+|+ +.+ ..++++++.+.+...
T Consensus 71 ~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 71 DWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred ChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 3457999999999998852 136899999999 444 448888887765443
No 241
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=87.05 E-value=1.6 Score=35.44 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCCCChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEe
Q 022113 22 TEPLGTAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 22 ~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~ 79 (302)
....|...++..++..+.. .++|+++.+|+ +.+..+.++++.|.+.+...+..+.+
T Consensus 70 ~~g~G~~~~l~~al~~~~~--~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~ 127 (183)
T TIGR00454 70 ASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIP 127 (183)
T ss_pred cCCCCHHHHHHHHhhcccC--CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEec
Confidence 4456777888888876532 37899999999 34566899999887766555544443
No 242
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=84.97 E-value=2.3 Score=34.10 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=35.3
Q ss_pred EEEEecC-CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHH
Q 022113 16 IICSQET-EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFH 66 (302)
Q Consensus 16 i~~~~~~-~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~ 66 (302)
++++.++ ...|+..+|+.++..+.. +.++++.+|+ +.+. .+.++++.+
T Consensus 59 ~~~v~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEPPGKGPLAGILAALRAAPA---DWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCCCCCCCHHHHHHHHHhcCC---CeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 3444443 467999999999998753 7899999999 4444 477787766
No 243
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=84.32 E-value=11 Score=30.86 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=59.7
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcCCcEEEEEEeCCCCCCcceEEEeCCCCcEEEE
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVEKF 101 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~~~g~v~~d~~~~~v~~~ 101 (302)
..|...++..++..... +.++++.+|+ +.+.+ +.++.. +.+. ..+.... +++
T Consensus 75 ~~gpl~gi~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~---~~~~---------------~~~~~~~-~~~---- 128 (196)
T PRK00560 75 LFSPLFGIINAFLTLQT---PEIFFISVDTPFVSFESIKKLCG---KENF---------------SVTYAKS-PTK---- 128 (196)
T ss_pred CCCcHHHHHHHHHhcCC---CeEEEEecCcCcCCHHHHHHHHh---cCCC---------------CEEEEcc-CCc----
Confidence 45777777777665443 7899999999 55655 455521 1111 1111111 111
Q ss_pred EecCCCCCCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEec--CeeEecCChHHHHHHHH
Q 022113 102 VEKPKLFVGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVLP--GFWMDIGQPRDYITGLR 172 (302)
Q Consensus 102 ~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~~--g~~~digt~~~~~~a~~ 172 (302)
...-..+|++++++.+...... ...-...++++.++....++ +.+.|++||++|.++.+
T Consensus 129 -----------~~Pl~al~~~~~~~~l~~~l~~-~~~~~~~ll~~~~~~~v~~~~~~~~~dinT~eDl~~~~~ 189 (196)
T PRK00560 129 -----------EHYLISLWHQSLLNALIYALKT-QNYRLSDLVKNTSSQAVHFEDEEEFLNLNTLKDYELALQ 189 (196)
T ss_pred -----------eeeeEEEEcHHHHHHHHHHHHh-CCccHHHHHHHCCcEEecCCCCccccCCCCHHHHHHHHH
Confidence 1112468888888776421000 00123444555444444443 46789999999977644
No 244
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=83.90 E-value=8.5 Score=30.44 Aligned_cols=71 Identities=10% Similarity=0.178 Sum_probs=48.6
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV 77 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~ 77 (302)
+.++++..++. .+.++..++..|-+.++..+...... +.++++.+|...+.+ +.++++...+.+.++.+..
T Consensus 44 ~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 44 EIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAARG---DIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred HHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhcC---CEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 34444444443 34667777778999999999887753 667788999876666 7888887556555554444
No 245
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=82.08 E-value=4 Score=33.10 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=33.6
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHHcC
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~~~ 70 (302)
..|.+++++.++..+.....+.++++.+|+ +.+.+ +.++++.+.+..
T Consensus 77 ~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 77 CEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred hhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 458899999999876432236789999999 55555 777877665433
No 246
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=82.03 E-value=25 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=35.3
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecC-cCHHHHHHHHH
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISE-YPFAEMIEFHK 67 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~-~~l~~~~~~~~ 67 (302)
+| +..+..+ ..|.-.-++.|.+.+. .++|++++|. +.+ ..+..+++.+.
T Consensus 62 ~g--v~vi~tp-G~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 62 VG--VKVIETP-GEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cC--ceEEEcC-CCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 55 4444443 4588889999999995 4999999999 444 33677777665
No 247
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=80.51 E-value=10 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=36.8
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHH
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH 66 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~ 66 (302)
..+.+.......|.++++..+...... +.++++.+|..++.+ +..++..+
T Consensus 52 ~~~~~~~~~~~~g~~~~~~~~~~~~~~---d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 52 PRVIRVINEENQGLAAARNAGLKAARG---EYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHhcC---CEEEEECCCCccCccHHHHHHHHH
Confidence 345666667778999999999988743 678889999988777 45543444
No 248
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=80.44 E-value=24 Score=29.39 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=88.5
Q ss_pred hhcCCcEEEEEecCC-CCCChH---HHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 9 EAKLGIKIICSQETE-PLGTAG---PLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 9 ~~~~g~~i~~~~~~~-~~Gt~~---al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
+.+.|.++-+...++ ..+++. ++..+...+... .+.++++.+=. +...++++..+.+.++..+-.+.+++-+.
T Consensus 60 A~~ygak~~~~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e~ 138 (228)
T COG1083 60 AKKYGAKVFLKRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECEH 138 (228)
T ss_pred HHHhCccccccCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeeccc
Confidence 666777765444432 334444 455666665442 23466666644 55677999999998888887777877653
Q ss_pred CCCcceEEEeCCCCcEEEEEecCCCC-------CCCeEEEEEEEeCHhhHhhccCCCCCccccchHHHHhcCcEEEEEe-
Q 022113 83 PSKYGVVVMEESTGKVEKFVEKPKLF-------VGNKINAGIYLLNPAVLDRIELRPTSIEKEVFPKIALEGKLFAMVL- 154 (302)
Q Consensus 83 ~~~~g~v~~d~~~~~v~~~~ekp~~~-------~~~~~~~Giy~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~v~~~~~- 154 (302)
.. |--+..+ +|.+..+.|.|... .....++.+|+++.+.|..- ..-+ ..+...|..
T Consensus 139 ~p-~k~f~~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~---~~~f----------~~~~~~y~m~ 202 (228)
T COG1083 139 HP-YKAFSLN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLEN---DCFF----------IPNTILYEMP 202 (228)
T ss_pred ch-HHHHHhc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHhhc---Ccee----------cCCceEEEcC
Confidence 21 1112222 46777777776321 23456889999999888431 1111 122333433
Q ss_pred cCeeEecCChHHHHHHHHHH
Q 022113 155 PGFWMDIGQPRDYITGLRLY 174 (302)
Q Consensus 155 ~g~~~digt~~~~~~a~~~~ 174 (302)
+....||.+..++.-++..+
T Consensus 203 ~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 203 EDESIDIDTELDLEIAENLI 222 (228)
T ss_pred cccccccccHHhHHHHHHHh
Confidence 34578999999998776544
No 249
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=80.38 E-value=9 Score=32.19 Aligned_cols=61 Identities=5% Similarity=0.069 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEEE
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIMV 77 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~~ 77 (302)
.++.+....+..|-+.|+..+...... +.++.+.+|...+.+ +.++++.+.+...++.++.
T Consensus 59 ~~i~~~~~~~~~G~~~a~n~g~~~a~g---d~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~ 120 (241)
T cd06427 59 FRVVVVPPSQPRTKPKACNYALAFARG---EYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQ 120 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHHhcCC---CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 455555555556888899888887643 566778999988777 7788888765545554443
No 250
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=80.33 E-value=12 Score=29.72 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=40.6
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEE
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 75 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l 75 (302)
++.++......|.+.|+..+...... +.++++.+|...+.+ +.++++.. +.+.++.+
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~~---d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~ 113 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHARG---DAVITMDADLQDPPELIPEMLAKW-EEGYDVVY 113 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcCC---CEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEE
Confidence 56666666667999999998887653 677778999977665 77887763 44444433
No 251
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=78.52 E-value=4.8 Score=29.06 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=22.5
Q ss_pred cccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEE
Q 022113 186 LATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRI 239 (302)
Q Consensus 186 ~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i 239 (302)
+.+++.+.++.....+..+... +..+........|+.++.+...+-.+.+.+
T Consensus 5 I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 5 IGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred ECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEE
Confidence 4455555555544444444222 223333333445555555543333334444
No 252
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=77.95 E-value=11 Score=31.65 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=44.8
Q ss_pred HHHHhhcCC-cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEE
Q 022113 5 LKEFEAKLG-IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 76 (302)
Q Consensus 5 ~~~~~~~~g-~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~ 76 (302)
+.++.+..+ ..+.+...+...|-+.|+..+...... +-++++.+|...+.+ +.++++...+.+.+++..
T Consensus 58 ~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g---~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 58 VKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASG---DFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred HHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 344433332 345555555567888888888776542 566778999977665 778888776666665444
No 253
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=77.72 E-value=17 Score=29.73 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=41.8
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEEE
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASIM 76 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l~ 76 (302)
.+.++..+...|-+.|+..+...... +.++++.+|...+.+ +..+++.....+.++...
T Consensus 54 ~i~~~~~~~n~G~~~a~n~g~~~a~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 54 RVRLIVRPGKRGLGSAYIEGFKAARG---DVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred ceEEEecCCCCChHHHHHHHHHHcCC---CEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 35666666677889999888887753 566778999877665 778888765555555443
No 254
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=77.54 E-value=41 Score=29.28 Aligned_cols=56 Identities=7% Similarity=-0.025 Sum_probs=42.0
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCC
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGG 71 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~ 71 (302)
...++++..+...|-+.|.-.++..... +.++++++|+..+.+ +.++++.+.+...
T Consensus 57 ~~~v~vi~~~~n~G~~~a~N~g~~~A~g---d~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 57 LPKVKVLRLKKREGLIRARIAGARAATG---DVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHccC---CEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 4457777777778888888888877643 677789999977666 8889988866543
No 255
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=77.30 E-value=7.3 Score=32.03 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=36.4
Q ss_pred EEEEecCC-CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHH
Q 022113 16 IICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKA 68 (302)
Q Consensus 16 i~~~~~~~-~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~ 68 (302)
+.++.+.. ..|..++++.++..+.. +.++|+.+|+ +.+.+ +.++++.+..
T Consensus 68 ~~~i~~~~~~~G~~~si~~~l~~~~~---~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 68 CHWLREPPPSQGPLVAFAQGLPQIKT---EWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CeEecCCCCCCChHHHHHHHHHhCCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 44554433 47999999999998853 6899999999 55544 7778776543
No 256
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=76.42 E-value=17 Score=28.43 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=42.8
Q ss_pred cccccCceEecceEEcCCcEECCCCEECCCcEECCCCEECCCcEEeceEEccCCEECCCcEEeccEECCCCEECCCcEEc
Q 022113 184 LKLATGANIVGNVLVHESAQIGEGCLIGPDVAVGPGCVVESGVRLSRCTVMRGVRIKKHACISSSIIGWHSTVGQWARVE 263 (302)
Q Consensus 184 ~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 263 (302)
+.+..++.+.+.......-+|.. .+.+...-..++.|++...|...+..+...| +|.+.++....+-+.|.+.+.+
T Consensus 24 tli~~g~~f~G~l~f~~~l~IdG--~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv-~G~v~Gni~~a~~Vei~~~g~v- 99 (146)
T COG1664 24 TLIGAGTTFKGELVFEGPLRIDG--TFEGDVHSDGGIVVGESGRVEGEIEAEHLIV-EGKVEGNILAAERVELYPGGRV- 99 (146)
T ss_pred eEEecCCEEEEEEEecceEEEeE--EEEEEEEeCCCEEECCccEEEEEEEeCEEEE-eeEEEEEEEEeeEEEEcCCcEE-
Confidence 34455555555544444444422 3333333333366666666654444444444 2444444444555555555554
Q ss_pred cCcEECCCcEECCceEE
Q 022113 264 NMTILGEDVHVCDEIYS 280 (302)
Q Consensus 264 ~~~~i~~~~~v~~~~~v 280 (302)
.+-+=++...+-.|+.+
T Consensus 100 ~GdI~~~~i~v~~Ga~f 116 (146)
T COG1664 100 IGDITTKEITVEEGAIF 116 (146)
T ss_pred eeeecccEEEEccCCEE
Confidence 22233334444444444
No 257
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=76.10 E-value=16 Score=27.83 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=39.0
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
..+.+...++..|.+.++..+...... +.++++.+|.+...+ +..++..+.+.
T Consensus 53 ~~~~~~~~~~~~g~~~~~n~~~~~~~~---~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 53 RRVLVVRDKENGGKAGALNAGLRHAKG---DIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred ceEEEEEecccCCchHHHHHHHHhcCC---CEEEEECCCCCcChHHHHHHHHHhccC
Confidence 446667777788999999999888743 677888999977666 66775555443
No 258
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=75.79 E-value=31 Score=30.80 Aligned_cols=126 Identities=21% Similarity=0.299 Sum_probs=72.5
Q ss_pred hhHHHHHhhcCCc---EEEEEecC---------------------CCCCChHHHHHc-----HhhhccCCCCcEEEEeCC
Q 022113 2 LNFLKEFEAKLGI---KIICSQET---------------------EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSD 52 (302)
Q Consensus 2 ~~~~~~~~~~~g~---~i~~~~~~---------------------~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD 52 (302)
++|+++ .+.+|+ ++.|+.|+ .|-|.|+-.... ++.+....-+.+.+.+.|
T Consensus 88 ~~~~~~-~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vD 166 (323)
T cd04193 88 RKFFKE-NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVD 166 (323)
T ss_pred HHHHHh-CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecC
Confidence 456666 566777 78888773 367888754433 333322223677788889
Q ss_pred ee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeCCCCcEEEEEecCCCCC------C----CeEEEEEEEe
Q 022113 53 VI-SEYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEESTGKVEKFVEKPKLFV------G----NKINAGIYLL 120 (302)
Q Consensus 53 ~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~~~~~v~~~~ekp~~~~------~----~~~~~Giy~~ 120 (302)
.+ ...--..++-.+.+++.++.+-+++...+ .+-|.+...+..-+++++.|-|.... . +.-|..+.+|
T Consensus 167 N~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~ekvG~l~~~~g~~~vvEysel~~~~~~~~~~~g~l~f~~~ni~~~~f 246 (323)
T cd04193 167 NILVKVADPVFIGFCISKGADVGAKVVRKRYPTEKVGVVVLVDGKPQVVEYSEISDELAEKRDADGELQYNAGNIANHFF 246 (323)
T ss_pred cccccccCHHHhHHHHHcCCceEEEEEECCCCCCceeEEEEECCeEEEEEeecCCHHHHhccCcCCcEecccchHhhhee
Confidence 84 43333457778888888988877766533 44565554311234556655553210 0 1122345567
Q ss_pred CHhhHhhc
Q 022113 121 NPAVLDRI 128 (302)
Q Consensus 121 ~~~~l~~l 128 (302)
+-++++.+
T Consensus 247 sl~fl~~~ 254 (323)
T cd04193 247 SLDFLEKA 254 (323)
T ss_pred CHHHHHHH
Confidence 77766554
No 259
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.54 E-value=14 Score=29.75 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 5 ~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
+.++.++.+ +.++..++-.|.+.|...+...... +-++++.+|.+...+ +.++++.+.++
T Consensus 48 ~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~g---d~i~~lD~Dd~~~~~~l~~~~~~~~~~ 108 (201)
T cd04195 48 LEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCTY---DWVARMDTDDISLPDRFEKQLDFIEKN 108 (201)
T ss_pred HHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcCC---CEEEEeCCccccCcHHHHHHHHHHHhC
Confidence 344444444 6777666667999999888886642 566778889877666 78888877553
No 260
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=75.49 E-value=44 Score=27.46 Aligned_cols=108 Identities=15% Similarity=0.244 Sum_probs=63.5
Q ss_pred HHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEE-EEEEeCCCC
Q 022113 5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEAS-IMVTKVDEP 83 (302)
Q Consensus 5 ~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~-l~~~~~~~~ 83 (302)
+.=+.++.++++.|-..=.....--++..|++++. +..|+.+|.+...+ .+........ ..+.+..-.
T Consensus 60 FeYLkdKy~vtLvyN~kY~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN------if~~~~~~S~Yfav~~~~~t 128 (231)
T COG4750 60 FEYLKDKYDVTLVYNPKYREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN------IFLTKESHSKYFAVYRSGKT 128 (231)
T ss_pred HHHHHHhcCeEEEeCchHHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh------hhhcCcccceEEEEEecCCC
Confidence 33344556777766665445667788999999994 57888999865443 1222221122 233322222
Q ss_pred CCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhc
Q 022113 84 SKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 84 ~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l 128 (302)
..|- +..+. +++++++.-... +.++-+|+..|+.+..+.+
T Consensus 129 nEw~-l~~~~-~~ki~~v~Igg~---~~~imsG~sff~~~~~~ki 168 (231)
T COG4750 129 NEWL-LIYNS-DGKITRVDIGGL---NGYIMSGISFFDAQFSNKI 168 (231)
T ss_pred ceeE-EEEcC-CCcEEEEEecCc---ccceEeeeeeecchhHHHH
Confidence 2232 33443 788888765542 3567789999998766544
No 261
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=72.48 E-value=56 Score=27.27 Aligned_cols=31 Identities=10% Similarity=0.227 Sum_probs=22.9
Q ss_pred CcEEEEeCCe-ecC-cCHHHHHHHHHHcCCcEE
Q 022113 44 EPFFVLNSDV-ISE-YPFAEMIEFHKAHGGEAS 74 (302)
Q Consensus 44 ~~~lv~~gD~-l~~-~~l~~~~~~~~~~~~~~~ 74 (302)
+.++++.||+ +.+ ..++++++.+.+.+.+.+
T Consensus 89 d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 89 DVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 5789999999 554 458899998876555544
No 262
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=71.34 E-value=20 Score=30.03 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.8
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 67 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~ 67 (302)
.+.++..+...|-++++..+...... +-++++.+|.+.+.+ ++++++.+.
T Consensus 85 ~v~~i~~~~~~g~~~a~n~gi~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 85 GVKLLRFPERRGKAAALNRALALATG---EIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred cEEEEEcCCCCChHHHHHHHHHHcCC---CEEEEEccccCcCHHHHHHHHHHhc
Confidence 56777777777889999888887753 677888999987766 778887764
No 263
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=69.17 E-value=9.7 Score=39.12 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=21.4
Q ss_pred cEEeceEEccCCEECCC-cEEeccEECCCCEECCCcEE
Q 022113 226 VRLSRCTVMRGVRIKKH-ACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 226 ~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~i~~~~~i 262 (302)
+.+.||++..++.++++ ++|++|.|+.+..||.++.|
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Ii 369 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSII 369 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEE
Confidence 34556666666666655 33555666666666666655
No 264
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.04 E-value=27 Score=28.07 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=35.7
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 67 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~ 67 (302)
+.+...++..|.+.++..+.........+-++++..|.+.+.+ +.++++...
T Consensus 53 i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 53 IVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred eEEEECccccchhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 6777777778888888777775532123566778889888777 666666654
No 265
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=67.04 E-value=18 Score=31.18 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=42.2
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcC
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~ 70 (302)
.+++++..++-+|-|+|...+.++......+-++++..|...+.+ +.++++...+.+
T Consensus 45 ~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 102 (281)
T TIGR01556 45 QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAEN 102 (281)
T ss_pred CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcC
Confidence 468888888788999999998887632223667888999988766 777887765543
No 266
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.22 E-value=27 Score=26.64 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
.+.+...++..|.+.++..+.+.... +-++++-.|...+.+ +..+++.+.+.
T Consensus 50 ~~~~~~~~~~~g~~~a~n~~~~~~~~---~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 50 EVRLIRNGENLGFGAGNNQGIREAKG---DYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred CeEEEecCCCcChHHHhhHHHhhCCC---CEEEEECCCcEECccHHHHHHHHHHhC
Confidence 56666677778999999999888742 566667888877666 77777766554
No 267
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=66.10 E-value=37 Score=27.33 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=39.2
Q ss_pred HHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHH
Q 022113 5 LKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 68 (302)
Q Consensus 5 ~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~ 68 (302)
+.++..+.+..+.+...+...|-+.++..+..... .+-++++..|.++..+ +.++++...+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~---g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 45 IKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD---GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC---CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 34444444445666666666777777777766543 2566778888877666 8888877433
No 268
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=64.98 E-value=83 Score=28.61 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHH
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEF 65 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~ 65 (302)
..|...++..++..... +.++++.+|+ +.+.+ +.++++.
T Consensus 243 ~~Gpl~gi~~al~~~~~---~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 243 DIGPLGGLLSAQRHHPD---AAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred CCCcHHHHHHHHHhCCC---CcEEEEeCCcCCCCHHHHHHHHHh
Confidence 46777888888776543 6789999999 55554 6666654
No 269
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=63.74 E-value=26 Score=29.07 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=41.0
Q ss_pred HHhhcCCcEEEEEecCCCCCC-hHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113 7 EFEAKLGIKIICSQETEPLGT-AGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 67 (302)
Q Consensus 7 ~~~~~~g~~i~~~~~~~~~Gt-~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~ 67 (302)
++..+.+.++.++...+..|- ++|+..+....... .+-++++..|...+.+ +.+++..+.
T Consensus 49 ~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~-~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 49 AHCAQLGERFRFFHVEPLPGAKAGALNYALERTAPD-AEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred HHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCCC-CCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 334445667777766655674 88888888876421 2567778999987777 788887764
No 270
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=63.02 E-value=13 Score=26.74 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred cEECCCCEECCCcEECCCCEECCCcEEe-ceEEccCCEECCCcEEeccEECCCCEE
Q 022113 202 AQIGEGCLIGPDVAVGPGCVVESGVRLS-RCTVMRGVRIKKHACISSSIIGWHSTV 256 (302)
Q Consensus 202 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i 256 (302)
+.|++++.+.++........|... +. +....+...|++++.+...+-.+.+.|
T Consensus 3 ~~I~~~~~i~G~i~~~~~v~i~G~--v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 3 TIIGKGTKIEGDISSDGDVRIDGR--VEGNIKAEGKVKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEECCCCEEEEEEEECcEEEEEEE--EEEEEEEceEEEEcCCCEEEEEEEEeEEEE
Confidence 344555555444444444444322 33 222223555666666644444444444
No 271
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=61.23 E-value=9.9 Score=30.89 Aligned_cols=50 Identities=14% Similarity=0.269 Sum_probs=35.5
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-e-cCcCHHHHHHHHH
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-I-SEYPFAEMIEFHK 67 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l-~~~~l~~~~~~~~ 67 (302)
+.++.++.+ |.+.+++.+...+... .+.++++.+|+ + ....++++++.+.
T Consensus 66 v~~i~~~~~-G~~~si~~al~~~~~~-~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 66 APVLRDPGP-GLNNALNAALAEAREP-GGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CEEEecCCC-CHHHHHHHHHHHhhcc-CCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 345556544 9999999998877432 24799999999 4 4455888877653
No 272
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=60.92 E-value=49 Score=27.38 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=41.3
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEE
Q 022113 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 74 (302)
Q Consensus 4 ~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~ 74 (302)
.++++..+ ...+.+...+ ..|-+.|+..+.+.... +-++++.+|.+.+.+ +.++++.+.+.+.++.
T Consensus 48 ~~~~~~~~-~~~v~~i~~~-~~~~~~a~N~g~~~a~~---d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v 114 (249)
T cd02525 48 IVQEYAAK-DPRIRLIDNP-KRIQSAGLNIGIRNSRG---DIIIRVDAHAVYPKDYILELVEALKRTGADNV 114 (249)
T ss_pred HHHHHHhc-CCeEEEEeCC-CCCchHHHHHHHHHhCC---CEEEEECCCccCCHHHHHHHHHHHhcCCCCEE
Confidence 34444333 3345655543 34667788888777643 667778999977666 7888876655554443
No 273
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=60.02 E-value=21 Score=29.27 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=35.1
Q ss_pred EEEEecCCCC-CChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHH
Q 022113 16 IICSQETEPL-GTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKA 68 (302)
Q Consensus 16 i~~~~~~~~~-Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~ 68 (302)
+.++.+..+. |...+|+.|+..+.. +.++++.||+ +.+.+ +..+.....+
T Consensus 62 ~~vv~D~~~~~GPL~Gi~~al~~~~~---~~~~v~~~D~P~i~~~lv~~l~~~~~~ 114 (192)
T COG0746 62 LPVVPDELPGFGPLAGILAALRHFGT---EWVLVLPCDMPFIPPELVERLLSAFKQ 114 (192)
T ss_pred CceeecCCCCCCCHHHHHHHHHhCCC---CeEEEEecCCCCCCHHHHHHHHHhhcc
Confidence 3444554434 999999999999864 7899999999 66655 4455554443
No 274
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=58.89 E-value=37 Score=29.85 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=45.1
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCC-cEEEEeCCeecCcC-HHHHHHHHHHcCCcEE
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGE-PFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 74 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~-~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~ 74 (302)
..++.++..++=+|-|++.-++......+ .. .+++++.|++.+.+ +.++++.+.+.+..+.
T Consensus 55 ~~~v~~i~~~~NlG~agg~n~g~~~a~~~-~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~ 117 (305)
T COG1216 55 FPNVRLIENGENLGFAGGFNRGIKYALAK-GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGV 117 (305)
T ss_pred CCcEEEEEcCCCccchhhhhHHHHHHhcC-CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeE
Confidence 45677888877789999888776666432 23 48889999988777 8899998877665443
No 275
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=56.09 E-value=1.3e+02 Score=25.76 Aligned_cols=65 Identities=9% Similarity=0.113 Sum_probs=39.7
Q ss_pred cCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe---ecCcC-HHHHHHHHHHcCCcEEEEEEeCCC
Q 022113 11 KLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV---ISEYP-FAEMIEFHKAHGGEASIMVTKVDE 82 (302)
Q Consensus 11 ~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~---l~~~~-l~~~~~~~~~~~~~~~l~~~~~~~ 82 (302)
.++.++.+... ..+..+++++++..+.. +..+|+..|. +.+.+ +.++++...+.+ ..+...+..+
T Consensus 89 ~~~~~i~~v~g--g~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~~d 157 (252)
T PLN02728 89 NIDVPLKFALP--GKERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPVKA 157 (252)
T ss_pred hcCCceEEcCC--CCchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecchh
Confidence 35666666532 23456789999988753 3456777774 44444 778888776654 4455555443
No 276
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=55.70 E-value=80 Score=25.91 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=25.6
Q ss_pred ChHHHHHcHhhhccCCCCcEEEEeCCe--ecCcCHHHHHHH
Q 022113 27 TAGPLALARDKLIDDTGEPFFVLNSDV--ISEYPFAEMIEF 65 (302)
Q Consensus 27 t~~al~~a~~~i~~~~~~~~lv~~gD~--l~~~~l~~~~~~ 65 (302)
.-.|+.+|++.+..+ ..++|+++|. +...+++++++.
T Consensus 72 LN~Ai~aa~~~~~~p--~~v~vvmaDLPLl~~~~i~~~~~~ 110 (210)
T COG1920 72 LNTAINAALDEIPLP--SEVIVVMADLPLLSPEHIERALSA 110 (210)
T ss_pred hHHHHHHHHhhCCCC--cceEEEecccccCCHHHHHHHHHh
Confidence 336788888887542 5699999998 444556666553
No 277
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=53.97 E-value=66 Score=25.33 Aligned_cols=50 Identities=12% Similarity=-0.028 Sum_probs=33.8
Q ss_pred EEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 17 ICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 17 ~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
.++...+..|-+.++..++..... +.++++..|.....+ +..+++.+.+.
T Consensus 53 ~~~~~~~~~g~~~a~n~~~~~a~~---~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 53 TYWISEPDKGIYDAMNKGIALATG---DIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred EEEEecCCcCHHHHHHHHHHHcCC---CEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 334444556888899888887643 566778888866555 77777555444
No 278
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=53.52 E-value=48 Score=26.47 Aligned_cols=52 Identities=15% Similarity=0.031 Sum_probs=37.6
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHH
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 68 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~ 68 (302)
..+.+...++..|-+.++..+...... +-++++..|...+.+ +..+++.+.+
T Consensus 58 ~~~~~~~~~~~~g~~~a~n~g~~~a~~---d~i~~ld~D~~~~~~~l~~~~~~~~~ 110 (202)
T cd04184 58 PRIKVVFREENGGISAATNSALELATG---EFVALLDHDDELAPHALYEVVKALNE 110 (202)
T ss_pred CCEEEEEcccCCCHHHHHHHHHHhhcC---CEEEEECCCCcCChHHHHHHHHHHHh
Confidence 346666666677888998888887643 566778888877766 7788877733
No 279
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=52.57 E-value=1.7e+02 Score=26.85 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=64.6
Q ss_pred HHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccC-CCCcEEEEeCCe---ecCcCHHHHHHHHHHcCCcEEEEEEe
Q 022113 4 FLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDD-TGEPFFVLNSDV---ISEYPFAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 4 ~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~-~~~~~lv~~gD~---l~~~~l~~~~~~~~~~~~~~~l~~~~ 79 (302)
.+.++.+++|.+++.+.-+ +|++-......+.++.. .-+.+.++.+++ +.+ |+.++.+..++.+ ..+++--
T Consensus 94 R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln-pl~~I~~~~k~~g--~l~iVDa 168 (383)
T COG0075 94 RFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN-PLKEIAKAAKEHG--ALLIVDA 168 (383)
T ss_pred HHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC-cHHHHHHHHHHcC--CEEEEEe
Confidence 3456677788888766554 56665555555555421 124667789998 445 7888777776663 3333322
Q ss_pred CCCCCCcceEEEeCCCCcEEEEEecCCCCCCCeEEEEEEEeCHhhHhhccCCC
Q 022113 80 VDEPSKYGVVVMEESTGKVEKFVEKPKLFVGNKINAGIYLLNPAVLDRIELRP 132 (302)
Q Consensus 80 ~~~~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~~l~~l~~~~ 132 (302)
+ +.+|-..++-++-.+--..-.++.....---.++..+|+++++.+....
T Consensus 169 V---sS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 169 V---SSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERK 218 (383)
T ss_pred c---ccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCC
Confidence 2 3334333322112222122221111111112478889999998886543
No 280
>PRK11204 N-glycosyltransferase; Provisional
Probab=51.83 E-value=70 Score=29.41 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
+++++..++..|-++|+..+...... +-++++.+|.+.+.| +.++++.+.+.
T Consensus 110 ~v~~i~~~~n~Gka~aln~g~~~a~~---d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 110 RLRVIHLAENQGKANALNTGAAAARS---EYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCC---CEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 46777755567889999988887643 677888999988777 78888877553
No 281
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=51.21 E-value=27 Score=28.71 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHhhcCC-cEEEEEecCCCCC---ChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHH
Q 022113 4 FLKEFEAKLG-IKIICSQETEPLG---TAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH 66 (302)
Q Consensus 4 ~~~~~~~~~g-~~i~~~~~~~~~G---t~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~ 66 (302)
.+.++...++ ..++++..+...| .+.++..+...... +-++++..|.+.+.+ +.++++.+
T Consensus 47 ~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~---d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 47 ILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARG---DYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp THHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCC---CEEEEECCCcEECHHHHHHHHHHH
Confidence 3445555554 4577777755334 57788888887653 677889999988777 78888877
No 282
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=49.58 E-value=52 Score=27.19 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=36.2
Q ss_pred CCcEEEEEecCCCCCC-hHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHH
Q 022113 12 LGIKIICSQETEPLGT-AGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEF 65 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt-~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~ 65 (302)
.+.++.++...+..|. ++++..+...... +-++++.+|.+.+.+ +..+...
T Consensus 59 ~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~---~~i~~~DaD~~~~~~~l~~~~~~ 111 (232)
T cd06437 59 QGVNIKHVRRADRTGYKAGALAEGMKVAKG---EYVAIFDADFVPPPDFLQKTPPY 111 (232)
T ss_pred cCCceEEEECCCCCCCchHHHHHHHHhCCC---CEEEEEcCCCCCChHHHHHhhhh
Confidence 3677887777665674 7788777776643 677889999988777 6664443
No 283
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=49.26 E-value=74 Score=28.33 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEE
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEAS 74 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~ 74 (302)
.+.++..+......|-+.|+..+...... +-++.+.+|...+.+ +.++++...+ +.|+.
T Consensus 63 ~~~~v~~i~~~~n~G~~~A~~~G~~~A~g---d~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV 122 (325)
T PRK10714 63 PDSHIVAILLNRNYGQHSAIMAGFSHVTG---DLIITLDADLQNPPEEIPRLVAKADE-GYDVV 122 (325)
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHhCCC---CEEEEECCCCCCCHHHHHHHHHHHHh-hCCEE
Confidence 34555544444456777888888776642 566778999877654 7888887743 45654
No 284
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.46 E-value=1e+02 Score=27.59 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred cEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHH---cCCcEEEEE
Q 022113 14 IKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA---HGGEASIMV 77 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~---~~~~~~l~~ 77 (302)
..++++..+...|-+.|+..+..... ++-++.+.+|...+.+ +.++++...+ .+.++.+..
T Consensus 137 ~~i~vi~~~~N~G~~~A~~~Gi~~a~---gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 137 IDIRLLSLLRNKGKGGAVRIGMLASR---GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHcc---CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 45777776666799999988887654 2566778999876655 7777776543 344444443
No 285
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=48.24 E-value=50 Score=25.82 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=36.5
Q ss_pred hHHHHHhhcCCcEEEEEecCC-CCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHH
Q 022113 3 NFLKEFEAKLGIKIICSQETE-PLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH 66 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~-~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~ 66 (302)
+.++++....+.++.+..++. ..|.+++...+...... +-++++..|.+.+.+ +.++++.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g---~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 42 ELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKG---DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcC---CEEEEEcCCcccCHHHHHHHHHHh
Confidence 344454444455555554433 34556666666665542 666778999877766 66666655
No 286
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=48.05 E-value=78 Score=25.88 Aligned_cols=50 Identities=12% Similarity=0.107 Sum_probs=32.8
Q ss_pred EEEEecCCCCC-ChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHH
Q 022113 16 IICSQETEPLG-TAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 68 (302)
Q Consensus 16 i~~~~~~~~~G-t~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~ 68 (302)
+.+...+...| -++++..+...... +-++++..|.+.+.+ +..+++.+.+
T Consensus 60 ~~~~~~~~~~~~~~~~~n~~~~~a~~---d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 60 YRYLTRPDNRHAKAGNLNNALAHTTG---DFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred ceEEEeCCCCCCcHHHHHHHHHhCCC---CEEEEEccccCcCccHHHHHHHHHhc
Confidence 44444443334 46667777776543 667778999988777 7777777655
No 287
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=47.16 E-value=2e+02 Score=25.39 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=64.8
Q ss_pred CCCCChHHHHHc-----HhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCCCCC-CcceEEEeCCCC
Q 022113 23 EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVDEPS-KYGVVVMEESTG 96 (302)
Q Consensus 23 ~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~v~~d~~~~ 96 (302)
.|.|.|+-.... ++.+....-+.+.+.+.|.+...-=..++..|..++.++++=+++...+. +=|.+...+..-
T Consensus 112 ~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~lg~~~~~~~~~~~evv~Kt~~dek~G~l~~~~g~~ 191 (300)
T cd00897 112 YPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRILNHMVDNKAEYIMEVTDKTRADVKGGTLIQYEGKL 191 (300)
T ss_pred ccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHHHHHHhcCCceEEEEeecCCCCCcccEEEEECCEE
Confidence 356666643322 22232222367788899997543334577888888989888666655443 446554432123
Q ss_pred cEEEEEecCCCC--------CCCeEEEEEEEeCHhhHhhc
Q 022113 97 KVEKFVEKPKLF--------VGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 97 ~v~~~~ekp~~~--------~~~~~~~Giy~~~~~~l~~l 128 (302)
+++++.|-|... .-...+++.++|+-++++.+
T Consensus 192 ~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 192 RLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred EEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHH
Confidence 577777766421 22468899999998888655
No 288
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=45.87 E-value=1e+02 Score=24.34 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=41.9
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCC--hHHHH-----HcHhhhccCCCCcEEE-E--eCCeecCcCHHHHHHHHHHcCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGT--AGPLA-----LARDKLIDDTGEPFFV-L--NSDVISEYPFAEMIEFHKAHGG 71 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt--~~al~-----~a~~~i~~~~~~~~lv-~--~gD~l~~~~l~~~~~~~~~~~~ 71 (302)
++|++.+.....+++..+.+...... ..... ..+..+.. ++++| + .|..+.+..|.+.++.+..++.
T Consensus 21 ~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~---~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~ 97 (157)
T PRK00103 21 AEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPK---GARVIALDERGKQLSSEEFAQELERWRDDGR 97 (157)
T ss_pred HHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCC---CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCC
Confidence 56777766666777777765432121 11111 11223332 44544 3 7888999999999998866553
Q ss_pred -cEEEEE
Q 022113 72 -EASIMV 77 (302)
Q Consensus 72 -~~~l~~ 77 (302)
+++++.
T Consensus 98 ~~i~F~I 104 (157)
T PRK00103 98 SDVAFVI 104 (157)
T ss_pred ccEEEEE
Confidence 555444
No 289
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=45.58 E-value=50 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=27.8
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHHHH
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFHKA 68 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~~~ 68 (302)
..|...++..++........+.++++.+|+ +.+.+ +.++++.+..
T Consensus 56 g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~ 102 (178)
T PRK00576 56 GLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQ 102 (178)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 456666666555543111136889999999 65655 6677775533
No 290
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=44.30 E-value=1.5e+02 Score=23.76 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=27.1
Q ss_pred cEEEEEecCCCCCCh---HHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHH
Q 022113 14 IKIICSQETEPLGTA---GPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFH 66 (302)
Q Consensus 14 ~~i~~~~~~~~~Gt~---~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~ 66 (302)
.++.+.......|.+ .++..+..... .+-++++.+|...+.+ +.++++..
T Consensus 58 ~~~~~~~~~~~~g~~~~~~~~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 58 VDARLLIGGEKVGINPKVNNLIKGYEEAR---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred CcEEEEecCCcCCCCHhHHHHHHHHHhCC---CCEEEEECCCceEChhHHHHHHHHh
Confidence 455555554333432 33434444432 2566667888876666 66666654
No 291
>PRK10063 putative glycosyl transferase; Provisional
Probab=43.39 E-value=1.3e+02 Score=25.45 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=33.6
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHc
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAH 69 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~ 69 (302)
++.++.++. .|-+.|+..+...... +-++.+.+|.++..+..+++......
T Consensus 59 ~i~~i~~~~-~G~~~A~N~Gi~~a~g---~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 59 NLRFVSEPD-NGIYDAMNKGIAMAQG---RFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CEEEEECCC-CCHHHHHHHHHHHcCC---CEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 466776654 4999999888887643 56677887777665644444444333
No 292
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.80 E-value=1.1e+02 Score=24.73 Aligned_cols=57 Identities=9% Similarity=0.095 Sum_probs=35.6
Q ss_pred CcEEEEEecC--CCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCc
Q 022113 13 GIKIICSQET--EPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGE 72 (302)
Q Consensus 13 g~~i~~~~~~--~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~ 72 (302)
+..+.++..+ ...|-+.++..+...... +-++++.+|.+...+ ++++++.+.+....
T Consensus 54 ~~~v~~~~~~~~~~~g~~~a~n~g~~~~~~---d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 54 NFQLKILNNSRVSISGKKNALTTAIKAAKG---DWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred CcceEEeeccCcccchhHHHHHHHHHHhcC---CEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 4555555544 244555666666655432 566778999988777 78888877655433
No 293
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=40.30 E-value=35 Score=31.39 Aligned_cols=54 Identities=24% Similarity=0.261 Sum_probs=28.9
Q ss_pred CCCChHHHHHc-----HhhhccCCCCcEEEEeCCeec-CcCHHHHHHHHHHcCCcEEEEEE
Q 022113 24 PLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVIS-EYPFAEMIEFHKAHGGEASIMVT 78 (302)
Q Consensus 24 ~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l~-~~~l~~~~~~~~~~~~~~~l~~~ 78 (302)
|-|.|+-.... ++.+.....|.+.|.+.|.+- ..||. +++.......+-.|=++
T Consensus 214 PPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~-ILn~~i~~~~ey~MEvT 273 (498)
T KOG2638|consen 214 PPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN-ILNHVINNNIEYLMEVT 273 (498)
T ss_pred CCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-HHHHHhcCCCceEEEec
Confidence 55666644332 233322334677788999875 46665 44544444444444444
No 294
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=38.91 E-value=1.1e+02 Score=25.02 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=35.8
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHH
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMI 63 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~ 63 (302)
..++.++..++..|-+.|...+.........+.++++.+|...+.+ +.+++
T Consensus 46 ~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHH
Confidence 3456667666678888888888887642112567778999988766 66764
No 295
>PRK10073 putative glycosyl transferase; Provisional
Probab=38.56 E-value=1.7e+02 Score=26.08 Aligned_cols=57 Identities=4% Similarity=-0.016 Sum_probs=39.4
Q ss_pred EEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcCCcEEE
Q 022113 15 KIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHGGEASI 75 (302)
Q Consensus 15 ~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~~~~~l 75 (302)
.+.++.++ ..|-+.|.-.++..... +.++.+.+|.+...+ +..+++...+.+.++.+
T Consensus 62 ~i~vi~~~-n~G~~~arN~gl~~a~g---~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 62 HVRLLHQA-NAGVSVARNTGLAVATG---KYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEECC-CCChHHHHHHHHHhCCC---CEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 46666664 45888888777776643 666778999877666 77788877666666543
No 296
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=35.65 E-value=1.6e+02 Score=26.62 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=36.3
Q ss_pred HHHhhcC-CcEEEEEecCCCCCChH---HHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113 6 KEFEAKL-GIKIICSQETEPLGTAG---PLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 67 (302)
Q Consensus 6 ~~~~~~~-g~~i~~~~~~~~~Gt~~---al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~ 67 (302)
.++.++. +.+++++.++++.|..+ ++.++.+... .|-++++.+|+..+.+ +++++..+.
T Consensus 89 ~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~---ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 89 RRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHAR---HDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred HHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhcc---CCEEEEECCCCCcChhHHHHHHHHhc
Confidence 3443333 46677776666556543 4444444332 3677778999988777 777777664
No 297
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=34.31 E-value=2.1e+02 Score=26.64 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=36.5
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcC
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~ 70 (302)
++.+.+..+ ..|-+.|+..+...... +-++++.+|.+.+.| ++++++.+.+.+
T Consensus 107 ~v~v~~~~~--~~Gka~AlN~gl~~s~g---~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 107 GLSLRYMNS--DQGKAKALNAAIYNSIG---KYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CeEEEEeCC--CCCHHHHHHHHHHHccC---CEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 344444433 36888888888887643 566778999988777 788888776543
No 298
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=34.25 E-value=4.2e+02 Score=25.26 Aligned_cols=106 Identities=14% Similarity=0.130 Sum_probs=59.8
Q ss_pred CCCCChHHHHHc-----HhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCC-cEEEEEEeCCCCCCcceEEEeCCC
Q 022113 23 EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGG-EASIMVTKVDEPSKYGVVVMEEST 95 (302)
Q Consensus 23 ~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~g~v~~d~~~ 95 (302)
.|.|.|+-.... ++.+....-+.+.+.+.|.+ ....-..++-.+...+. +++-.+.+..+..+-|.+......
T Consensus 226 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~EkvG~~~~~~g~ 305 (482)
T PTZ00339 226 APGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAKVLDPEFIGLASSFPAHDVLNKCVKREDDESVGVFCLKDYE 305 (482)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCcccccccCHHHhHHHHHCCchhheeeeecCCCCCceeEEEEeCCc
Confidence 356777744432 33333322356777788886 33333456677766666 666555555444555766543212
Q ss_pred CcEEEEEecCCCC-----------CCCeEEEEEEEeCHhhHhhc
Q 022113 96 GKVEKFVEKPKLF-----------VGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 96 ~~v~~~~ekp~~~-----------~~~~~~~Giy~~~~~~l~~l 128 (302)
-.++++.|-+... .-...+...++|+-++++.+
T Consensus 306 ~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~~h~fsl~fl~~~ 349 (482)
T PTZ00339 306 WQVVEYTEINERILNNDELLTGELAFNYGNICSHIFSLDFLKKV 349 (482)
T ss_pred ccEEEEeccChhhhhcccccCCeecccccceEEEEEEHHHHHHH
Confidence 2567776643111 01345778999999888755
No 299
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=33.74 E-value=1.8e+02 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=16.5
Q ss_pred ceEEccCCEECCCcEEeccEECCCCEECCCcEE
Q 022113 230 RCTVMRGVRIKKHACISSSIIGWHSTVGQWARV 262 (302)
Q Consensus 230 ~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i 262 (302)
+....+.+.|...+.+..-+=.+...|..++.+
T Consensus 84 ni~~a~~Vei~~~g~v~GdI~~~~i~v~~Ga~f 116 (146)
T COG1664 84 NILAAERVELYPGGRVIGDITTKEITVEEGAIF 116 (146)
T ss_pred EEEEeeEEEEcCCcEEeeeecccEEEEccCCEE
Confidence 445555666666655544343344444444444
No 300
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=33.03 E-value=2.7e+02 Score=26.57 Aligned_cols=106 Identities=16% Similarity=0.147 Sum_probs=62.4
Q ss_pred CCCCChHHHHHc-----HhhhccCCCCcEEEEeCCee-cCcCHHHHHHHHHHcCCcEEEEEEeCCCC-CCcceEEEeCCC
Q 022113 23 EPLGTAGPLALA-----RDKLIDDTGEPFFVLNSDVI-SEYPFAEMIEFHKAHGGEASIMVTKVDEP-SKYGVVVMEEST 95 (302)
Q Consensus 23 ~~~Gt~~al~~a-----~~~i~~~~~~~~lv~~gD~l-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~v~~d~~~ 95 (302)
.|.|.|+-.... ++.+....-+.+.+.+.|.+ ...--..++-.+..++.++.+-+++..++ .+-|.+.....+
T Consensus 237 ~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~~EkvG~i~~~~~~ 316 (493)
T PLN02435 237 APDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYPQEKVGVFVRRGKG 316 (493)
T ss_pred CCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEecccccccccCHHHHHHHHhcCCceEEEeeecCCCCCceeEEEEecCC
Confidence 477888854432 23332222356677788884 43334557788888888888877765444 344766542124
Q ss_pred Cc--EEEEEecCCC---------C--CCCeEEEEEEEeCHhhHhhc
Q 022113 96 GK--VEKFVEKPKL---------F--VGNKINAGIYLLNPAVLDRI 128 (302)
Q Consensus 96 ~~--v~~~~ekp~~---------~--~~~~~~~Giy~~~~~~l~~l 128 (302)
|+ ++++.|-|.. . .-+..+.+.++|+-++++.+
T Consensus 317 g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~gnI~~h~fs~~fL~~~ 362 (493)
T PLN02435 317 GPLTVVEYSELDQAMASAINQQTGRLRYCWSNVCLHMFTLDFLNQV 362 (493)
T ss_pred CCEEEEEeccCCHHHHhccCccccccccchhhHHHhhccHHHHHHH
Confidence 44 5555554321 0 11345678889999988776
No 301
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=32.01 E-value=1.9e+02 Score=24.00 Aligned_cols=63 Identities=17% Similarity=0.157 Sum_probs=37.3
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeec-CcC-HHHHHHHHHHcCCcEEEEEE
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVIS-EYP-FAEMIEFHKAHGGEASIMVT 78 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~-~~~-l~~~~~~~~~~~~~~~l~~~ 78 (302)
+..|.+..-....+.+.+.-+|++.-.. +.++.+.-|+.+ +.+ +.++++.+.+...-.++.+.
T Consensus 28 ~~~i~i~~~~~~~s~~~~yN~a~~~a~~---~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGva 92 (217)
T PF13712_consen 28 GELIEIDNVRNAKSMAAAYNEAMEKAKA---KYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVA 92 (217)
T ss_dssp EEEEEEE-SSS-S-TTTHHHHHGGG--S---SEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESE
T ss_pred ceEEEEeccCCCcCHHHHHHHHHHhCCC---CEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEee
Confidence 5566666666667888888888887542 344557999955 666 67777777665554444443
No 302
>PRK10018 putative glycosyl transferase; Provisional
Probab=31.57 E-value=1.8e+02 Score=25.29 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=40.0
Q ss_pred CcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHH
Q 022113 13 GIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKA 68 (302)
Q Consensus 13 g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~ 68 (302)
+.+|.++..+...|.+.|.-.+...... +-++.+.+|.++..+ +..+++...+
T Consensus 59 ~~ri~~i~~~~n~G~~~a~N~gi~~a~g---~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 59 DPRITYIHNDINSGACAVRNQAIMLAQG---EYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC---CEEEEECCCCCCCccHHHHHHHHHHh
Confidence 4578888887778888888888876643 667778999877666 7777776544
No 303
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=31.04 E-value=55 Score=30.18 Aligned_cols=22 Identities=9% Similarity=0.161 Sum_probs=13.6
Q ss_pred CCEECCCcEEeccEECCCCEEC
Q 022113 236 GVRIKKHACISSSIIGWHSTVG 257 (302)
Q Consensus 236 ~~~i~~~~~i~~~~i~~~~~i~ 257 (302)
.-.|-+|++++++++..++.|-
T Consensus 475 ~i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 475 RIDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred eeecCCCCeeecceEecccccc
Confidence 3345567777777766666553
No 304
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=30.25 E-value=2.7e+02 Score=21.81 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=35.4
Q ss_pred CCcEEEEEecCCCCCChHHHHHcHhhhc--cCCCCcEEEEeCCeecCcC-HHHHHHHHHH
Q 022113 12 LGIKIICSQETEPLGTAGPLALARDKLI--DDTGEPFFVLNSDVISEYP-FAEMIEFHKA 68 (302)
Q Consensus 12 ~g~~i~~~~~~~~~Gt~~al~~a~~~i~--~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~ 68 (302)
.+..+......+..|-+.|+..+..... ....+-++++.+|...+.+ +.++++.+.+
T Consensus 49 ~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 49 AGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred cCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 3444333333445577888887777653 1112566778999988777 6777776654
No 305
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=29.69 E-value=1.7e+02 Score=23.88 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=42.7
Q ss_pred HHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCc-CHHHHHHHHHHcCCc
Q 022113 6 KEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEY-PFAEMIEFHKAHGGE 72 (302)
Q Consensus 6 ~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~-~l~~~~~~~~~~~~~ 72 (302)
.++.+.+|..+.+.......++......+...... ..+.++.+.||. +.+. .+.+.++.+.+...+
T Consensus 53 ~~~~~~~g~~v~~~~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 53 DDIAEEYGAKVIFRRGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp HHHHHHTTSEEEE--TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCeeEEcChhhcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 34456688888777777777777666555655543 223567789999 5554 488899999887764
No 306
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=28.51 E-value=1.3e+02 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=31.5
Q ss_pred CCCCChHHHHHcHhhhccCCCCcEEEEeCCe-ecCcC-HHHHHHHH
Q 022113 23 EPLGTAGPLALARDKLIDDTGEPFFVLNSDV-ISEYP-FAEMIEFH 66 (302)
Q Consensus 23 ~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~-l~~~~-l~~~~~~~ 66 (302)
...|...+|+.++..... +.++++.+|+ +.+.+ +.++++.+
T Consensus 228 ~~~GPlagI~aaL~~~~~---~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 228 ESVGPISGILTALQSYPG---VNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred CCCChHHHHHHHHHhCCC---CCEEEEECCcCCCCHHHHHHHHHhh
Confidence 356999999999987643 5789999999 56655 67777765
No 307
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=28.24 E-value=1.5e+02 Score=22.18 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=40.8
Q ss_pred hhHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEeCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTKVD 81 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~~~ 81 (302)
++||+.|.||-=+.++.-.-. ..+.-..+..++..- ....++++|++=.+ .+...++...+.+-..|++--+..
T Consensus 26 r~yLGtfrERV~lalt~~q~~-~~~~~~~~~~~l~~~----~~~~l~ing~l~~~-~~~~YiklA~~~~~~fTiv~~~~~ 99 (120)
T PF07997_consen 26 RRYLGTFRERVILALTKEQVE-EPDIYPEFEQALKDY----PNYKLKINGNLDYS-FQSKYIKLANKHGIPFTIVNDPEY 99 (120)
T ss_dssp HHTTT--GGGEEEEEEHHHHT-SSS--HHHHHHHHC-----SSEEEEEETTS-HH-HHHHHHHHHHHTT--EEEE---SS
T ss_pred HHhcchHHhHhhheecHHHHh-ChhHHHHHHHHHhhC----CCeEEEEcCCCCHH-HHHHHHHHHHHcCCCEEEeCCCCc
Confidence 468888888765555532222 334555666666543 25778899985221 234445555555655555544322
Q ss_pred CCCCcceEEEe
Q 022113 82 EPSKYGVVVME 92 (302)
Q Consensus 82 ~~~~~g~v~~d 92 (302)
...+|+|...
T Consensus 100 -~~~~gLVv~s 109 (120)
T PF07997_consen 100 -HSPFGLVVAS 109 (120)
T ss_dssp ---SEEEEEEE
T ss_pred -cCCeEEEEEC
Confidence 2257877654
No 308
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=28.15 E-value=2.2e+02 Score=26.48 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=35.4
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHc
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAH 69 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~ 69 (302)
+.++..++..|-++|+..+..... .+.++++.+|.+.+.| +.++++.+.+.
T Consensus 132 v~vv~~~~n~Gka~AlN~gl~~a~---~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 132 LRVIHLAHNQGKAIALRMGAAAAR---SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 444444445677888888777653 3677888999988777 77787766554
No 309
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.60 E-value=2.1e+02 Score=23.07 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=29.3
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcC
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~ 70 (302)
.|-+.+...+...... +.++++..|...+.+ +.+++..+....
T Consensus 58 ~g~~~a~n~g~~~a~~---~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 58 KGRARQMNAGAAAARG---DWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred cCHHHHHHHHHHhccC---CEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 4667777777776643 677889999977666 666655554443
No 310
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=23.43 E-value=4e+02 Score=21.49 Aligned_cols=43 Identities=19% Similarity=0.040 Sum_probs=25.7
Q ss_pred CCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHHHcC
Q 022113 25 LGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHKAHG 70 (302)
Q Consensus 25 ~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~~~~ 70 (302)
.|-+.|...+..... ++-++.+.+|.+.+.+ +.+++....+..
T Consensus 70 ~G~~~a~N~g~~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 70 KGVGYAKNQAIAQSS---GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred ccHHHHHHHHHHhcC---CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 344555544444332 3566778999876655 777777665543
No 311
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=21.59 E-value=3.6e+02 Score=21.13 Aligned_cols=73 Identities=11% Similarity=0.152 Sum_probs=40.2
Q ss_pred hhHHHHHhhcCCcEEEEEecCC-CCC-ChHHHHH-----cHhhhccCCCCcEEE-E--eCCeecCcCHHHHHHHHHHcCC
Q 022113 2 LNFLKEFEAKLGIKIICSQETE-PLG-TAGPLAL-----ARDKLIDDTGEPFFV-L--NSDVISEYPFAEMIEFHKAHGG 71 (302)
Q Consensus 2 ~~~~~~~~~~~g~~i~~~~~~~-~~G-t~~al~~-----a~~~i~~~~~~~~lv-~--~gD~l~~~~l~~~~~~~~~~~~ 71 (302)
++|.+.+.....+++..+.+.. ..+ +...+.. .+..+. ++++| + .|..+.+..|.+.++.+..++.
T Consensus 20 ~~Y~kRl~~~~~~ei~el~~~~~~~~~~~~~~~~~E~~~il~~~~----~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~ 95 (153)
T TIGR00246 20 EEYTRRFPKDAPFELIEIPAGKRGKNADIKRILDKEGDRILAAIG----KAHVVTLDIPGKPWTTPQLADTLEKWKTDGR 95 (153)
T ss_pred HHHHHhcCCcCCeEEEEeCCccccccccHHHHHHHHHHHHHHhCC----CCeEEEEcCCCCcCCHHHHHHHHHHHhccCC
Confidence 4666666665566666554432 111 2112111 122232 24544 3 7888999999999998866665
Q ss_pred cEEEEEE
Q 022113 72 EASIMVT 78 (302)
Q Consensus 72 ~~~l~~~ 78 (302)
+++++.-
T Consensus 96 ~i~FvIG 102 (153)
T TIGR00246 96 DVTLLIG 102 (153)
T ss_pred eEEEEEc
Confidence 5554443
No 312
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=20.80 E-value=2.1e+02 Score=23.32 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred EEEEecCCCCCChHHHHHcHhhhccCCCCcEEEEeCCeecCcC-HHHHHHHHH
Q 022113 16 IICSQETEPLGTAGPLALARDKLIDDTGEPFFVLNSDVISEYP-FAEMIEFHK 67 (302)
Q Consensus 16 i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~~~-l~~~~~~~~ 67 (302)
+.+..++ ..|-+.++..+...... +.++++.+|...+.+ +.++++.+.
T Consensus 55 ~~v~~~~-~~g~~~a~n~g~~~a~~---d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 55 IFVITVP-HPGKRRALAEGIRHVTT---DIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred EEEEecC-CCChHHHHHHHHHHhCC---CEEEEECCCceeChhHHHHHHHhcc
Confidence 4444443 45778888777776643 677888999988777 778887765
No 313
>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways. The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....
Probab=20.50 E-value=1.9e+02 Score=19.45 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=25.4
Q ss_pred CCCChHHHHHcHhhhccCCCCcEEEEeCCeecC
Q 022113 24 PLGTAGPLALARDKLIDDTGEPFFVLNSDVISE 56 (302)
Q Consensus 24 ~~Gt~~al~~a~~~i~~~~~~~~lv~~gD~l~~ 56 (302)
-.|...+|..|..++....-+..||+.+|.+.+
T Consensus 7 C~g~~~al~~A~~~i~~g~~~~~Lvv~~d~~s~ 39 (80)
T PF08545_consen 7 CAGFLYALDVAAALIASGRAKNALVVGGDRLSR 39 (80)
T ss_dssp GGHHHHHHHHHHHHHHTTS-SEEEEEEEEEGGG
T ss_pred chHHHHHHHHHHHHHhhccCCEEEEEeeccccc
Confidence 446677899999988665447899999999765
No 314
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=20.40 E-value=2.8e+02 Score=21.00 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=25.1
Q ss_pred CcEEEEeCCeecCcCHHHHHHHHHHcCCcEEEEEEe
Q 022113 44 EPFFVLNSDVISEYPFAEMIEFHKAHGGEASIMVTK 79 (302)
Q Consensus 44 ~~~lv~~gD~l~~~~l~~~~~~~~~~~~~~~l~~~~ 79 (302)
+.+++++||. ||..+++..++.+..+.++..+
T Consensus 101 d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 101 DTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred CEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 6888899985 8888888888888777666654
No 315
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.09 E-value=1.6e+02 Score=26.63 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=48.1
Q ss_pred hHHHHHhhcCCcEEEEEecCCCCCChHHHHHcHhhhccCCCCcE-EEEeCCeecCcCHH----HHHHHHHHcCCcEEEEE
Q 022113 3 NFLKEFEAKLGIKIICSQETEPLGTAGPLALARDKLIDDTGEPF-FVLNSDVISEYPFA----EMIEFHKAHGGEASIMV 77 (302)
Q Consensus 3 ~~~~~~~~~~g~~i~~~~~~~~~Gt~~al~~a~~~i~~~~~~~~-lv~~gD~l~~~~l~----~~~~~~~~~~~~~~l~~ 77 (302)
||+..+|..-.-.+.....+.+.|.|-++..++.- + .+-+ -++.||.++..... ++++..++..+|+.+.
T Consensus 12 QffagiGGee~Ad~~p~~~~g~vGp~~~l~~~l~~---~-~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~via- 86 (349)
T PF07355_consen 12 QFFAGIGGEEKADTPPEVREGPVGPGLMLEKALKD---D-AEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIA- 86 (349)
T ss_pred hhhcccCccccCCCCCccccCCCChHHHHHHHhcC---C-CEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEE-
Confidence 34444444333334445556788999998886653 1 1333 45799999866544 4555556777786543
Q ss_pred EeCCCCCCcce
Q 022113 78 TKVDEPSKYGV 88 (302)
Q Consensus 78 ~~~~~~~~~g~ 88 (302)
-|.-+..+||.
T Consensus 87 GPaFnagrYG~ 97 (349)
T PF07355_consen 87 GPAFNAGRYGV 97 (349)
T ss_pred cCCcCCchHHH
Confidence 33345666764
Done!