Query 022114
Match_columns 302
No_of_seqs 82 out of 109
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 08:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02508 magnesium-protoporphy 100.0 2E-150 4E-155 1055.4 16.9 242 60-301 1-242 (357)
2 PRK13654 magnesium-protoporphy 100.0 4E-149 9E-154 1046.7 16.5 239 58-301 8-246 (355)
3 CHL00185 ycf59 magnesium-proto 100.0 3E-148 6E-153 1039.5 16.4 236 62-302 8-243 (351)
4 TIGR02029 AcsF magnesium-proto 100.0 3E-148 6E-153 1035.6 16.2 236 61-301 1-236 (337)
5 cd01047 ACSF Aerobic Cyclase S 100.0 2E-145 5E-150 1011.7 16.4 226 71-301 1-226 (323)
6 PF02915 Rubrerythrin: Rubrery 99.7 3.1E-18 6.7E-23 130.3 3.1 128 141-274 1-137 (137)
7 cd00657 Ferritin_like Ferritin 98.9 2.3E-09 5.1E-14 76.7 4.9 123 143-273 3-129 (130)
8 cd01044 Ferritin_CCC1_N Ferrit 97.3 0.00048 1E-08 55.3 5.1 118 144-275 4-124 (125)
9 cd01046 Rubrerythrin_like rubr 96.7 0.0048 1E-07 50.1 5.9 119 139-276 2-121 (123)
10 cd01041 Rubrerythrin Rubreryth 96.5 0.0075 1.6E-07 48.8 6.1 127 140-275 3-131 (134)
11 cd00657 Ferritin_like Ferritin 96.0 0.0081 1.7E-07 42.9 3.2 55 137-193 76-130 (130)
12 PF13668 Ferritin_2: Ferritin- 95.8 0.0084 1.8E-07 48.1 3.2 54 139-194 83-136 (137)
13 cd01045 Ferritin_like_AB Uncha 95.8 0.0067 1.4E-07 46.1 2.3 123 142-273 2-138 (139)
14 cd07908 Mn_catalase_like Manga 95.8 0.019 4E-07 47.2 5.0 127 141-274 19-154 (154)
15 cd00907 Bacterioferritin Bacte 95.1 0.072 1.6E-06 42.9 6.2 133 137-276 4-139 (153)
16 PF02915 Rubrerythrin: Rubrery 94.8 0.047 1E-06 41.7 4.3 56 135-192 81-136 (137)
17 cd01049 RNRR2 Ribonucleotide R 94.2 0.082 1.8E-06 47.2 5.0 60 135-196 141-204 (288)
18 PRK10635 bacterioferritin; Pro 93.2 0.32 7E-06 41.8 6.7 134 137-275 5-139 (158)
19 PF00210 Ferritin: Ferritin-li 92.3 0.33 7.1E-06 37.3 5.1 131 140-275 1-137 (142)
20 cd07911 RNRR2_Rv0233_like Ribo 92.3 0.071 1.5E-06 48.4 1.6 44 151-196 160-204 (280)
21 cd07911 RNRR2_Rv0233_like Ribo 92.2 0.58 1.2E-05 42.6 7.3 73 126-199 34-108 (280)
22 cd01045 Ferritin_like_AB Uncha 91.6 0.19 4.1E-06 38.2 3.0 51 139-191 87-137 (139)
23 cd01050 Acyl_ACP_Desat Acyl AC 91.5 0.1 2.3E-06 49.5 1.9 50 143-192 152-201 (297)
24 COG1633 Uncharacterized conser 91.4 0.17 3.8E-06 44.4 3.0 57 139-197 25-81 (176)
25 PRK08326 ribonucleotide-diphos 91.2 0.11 2.3E-06 48.6 1.6 43 150-194 178-221 (311)
26 PF00268 Ribonuc_red_sm: Ribon 91.0 0.68 1.5E-05 41.9 6.5 145 125-276 42-207 (281)
27 cd01052 DPSL DPS-like protein, 90.6 0.5 1.1E-05 37.8 4.7 134 136-273 4-147 (148)
28 PRK07209 ribonucleotide-diphos 90.6 0.21 4.6E-06 47.8 3.0 55 133-189 196-255 (369)
29 PF11583 AurF: P-aminobenzoate 89.4 0.78 1.7E-05 41.6 5.5 169 101-277 34-227 (304)
30 cd01049 RNRR2 Ribonucleotide R 89.3 0.9 2E-05 40.7 5.8 141 125-276 34-203 (288)
31 cd01055 Nonheme_Ferritin nonhe 89.0 2.2 4.7E-05 34.8 7.3 134 139-276 4-138 (156)
32 cd07908 Mn_catalase_like Manga 89.0 0.4 8.6E-06 39.5 3.0 52 139-192 102-153 (154)
33 PF00268 Ribonuc_red_sm: Ribon 87.7 0.32 7E-06 43.9 1.9 43 151-195 165-207 (281)
34 PRK09614 nrdF ribonucleotide-d 87.4 1.9 4.2E-05 40.0 6.8 152 125-282 45-221 (324)
35 COG0208 NrdF Ribonucleotide re 87.3 0.59 1.3E-05 45.4 3.5 126 134-272 171-327 (348)
36 cd01042 DMQH Demethoxyubiquino 87.1 0.46 1E-05 41.9 2.4 110 148-271 10-135 (165)
37 PRK09614 nrdF ribonucleotide-d 86.3 0.67 1.5E-05 43.0 3.2 54 137-192 151-208 (324)
38 PF03405 FA_desaturase_2: Fatt 83.6 0.7 1.5E-05 44.9 2.1 47 148-194 162-209 (330)
39 PF13668 Ferritin_2: Ferritin- 83.1 3.7 7.9E-05 33.0 5.7 116 146-274 9-135 (137)
40 PLN02492 ribonucleoside-diphos 82.8 0.82 1.8E-05 42.8 2.1 49 139-189 151-203 (324)
41 PLN02492 ribonucleoside-diphos 82.6 2.7 5.7E-05 39.5 5.4 144 126-276 45-209 (324)
42 PTZ00211 ribonucleoside-diphos 82.2 0.82 1.8E-05 43.0 1.9 49 139-189 162-214 (330)
43 PRK12775 putative trifunctiona 81.5 1.2 2.6E-05 48.0 3.1 123 141-276 863-997 (1006)
44 PTZ00211 ribonucleoside-diphos 80.5 3.8 8.2E-05 38.6 5.6 143 126-275 56-219 (330)
45 PRK12759 bifunctional gluaredo 80.0 1.7 3.7E-05 42.2 3.3 55 135-191 233-291 (410)
46 cd07910 MiaE MiaE tRNA-modifyi 78.2 8.3 0.00018 35.1 6.8 112 78-197 44-160 (180)
47 TIGR00754 bfr bacterioferritin 77.7 8.9 0.00019 31.8 6.4 136 136-276 4-140 (157)
48 PRK08326 ribonucleotide-diphos 77.3 9.3 0.0002 35.9 7.2 150 126-281 51-231 (311)
49 PRK13967 nrdF1 ribonucleotide- 77.0 1.3 2.9E-05 41.7 1.5 44 151-196 166-210 (322)
50 cd01048 Ferritin_like_AB2 Unch 76.1 1.2 2.6E-05 37.0 0.9 47 150-201 12-58 (135)
51 PRK12759 bifunctional gluaredo 75.4 6.5 0.00014 38.3 5.8 151 126-281 132-304 (410)
52 COG1592 Rubrerythrin [Energy p 73.9 4 8.6E-05 36.5 3.6 111 140-276 6-128 (166)
53 PRK07209 ribonucleotide-diphos 73.8 6.9 0.00015 37.7 5.5 151 126-282 83-271 (369)
54 PRK13965 ribonucleotide-diphos 73.5 1.9 4.2E-05 40.9 1.7 51 135-188 164-214 (335)
55 PRK13456 DNA protection protei 73.3 12 0.00027 34.1 6.6 143 133-279 15-167 (186)
56 cd01050 Acyl_ACP_Desat Acyl AC 71.8 3.4 7.5E-05 39.5 2.9 53 230-285 76-132 (297)
57 PF11583 AurF: P-aminobenzoate 67.6 4.9 0.00011 36.5 2.9 50 146-196 178-227 (304)
58 PRK09101 nrdB ribonucleotide-d 65.6 6.7 0.00014 38.0 3.5 53 135-189 190-246 (376)
59 PF06175 MiaE: tRNA-(MS[2]IO[6 64.5 16 0.00034 34.7 5.6 118 72-198 89-212 (240)
60 TIGR02156 PA_CoA_Oxy1 phenylac 64.1 4.6 9.9E-05 38.7 2.0 153 128-291 14-184 (289)
61 PTZ00183 centrin; Provisional 63.9 21 0.00046 27.9 5.5 87 101-190 15-108 (158)
62 PF03405 FA_desaturase_2: Fatt 60.0 4.4 9.5E-05 39.6 1.2 27 248-274 96-122 (330)
63 PF08969 USP8_dimer: USP8 dime 58.8 4.2 9.1E-05 32.6 0.7 23 229-251 59-81 (115)
64 PF09537 DUF2383: Domain of un 58.4 12 0.00027 29.1 3.2 58 141-200 4-61 (111)
65 cd01051 Mn_catalase Manganese 56.5 10 0.00022 32.8 2.6 55 140-196 101-155 (156)
66 PRK13966 nrdF2 ribonucleotide- 54.9 67 0.0014 30.6 8.0 171 93-275 14-209 (324)
67 PF05138 PaaA_PaaC: Phenylacet 53.0 12 0.00026 34.8 2.8 155 127-292 6-181 (263)
68 COG1633 Uncharacterized conser 50.8 35 0.00076 30.2 5.2 55 137-193 112-166 (176)
69 cd01051 Mn_catalase Manganese 50.4 26 0.00056 30.3 4.2 116 145-276 30-154 (156)
70 PF07651 ANTH: ANTH domain; I 48.3 25 0.00054 31.4 3.9 105 129-235 13-126 (280)
71 cd01048 Ferritin_like_AB2 Unch 45.9 19 0.00041 29.9 2.6 45 139-185 83-127 (135)
72 KOG0036 Predicted mitochondria 45.6 33 0.00072 35.3 4.7 142 100-260 14-163 (463)
73 PRK13778 paaA phenylacetate-Co 45.4 20 0.00043 34.9 3.0 155 127-292 31-203 (314)
74 PF13438 DUF4113: Domain of un 45.3 13 0.00027 27.0 1.3 20 66-86 31-50 (52)
75 PF14337 DUF4393: Domain of un 45.1 23 0.0005 30.1 3.1 47 132-190 32-78 (186)
76 PRK12775 putative trifunctiona 43.2 39 0.00084 36.9 5.1 55 140-196 943-998 (1006)
77 PRK13966 nrdF2 ribonucleotide- 42.8 14 0.00031 35.0 1.6 37 151-189 168-204 (324)
78 cd01056 Euk_Ferritin eukaryoti 42.7 82 0.0018 26.4 6.0 135 139-275 4-141 (161)
79 COG1592 Rubrerythrin [Energy p 42.4 20 0.00042 32.2 2.3 62 132-196 67-129 (166)
80 PF10934 DUF2634: Protein of u 41.9 26 0.00056 28.8 2.8 48 62-109 25-77 (112)
81 cd01046 Rubrerythrin_like rubr 38.6 45 0.00098 27.1 3.7 65 128-196 57-122 (123)
82 PLN00179 acyl- [acyl-carrier p 37.6 21 0.00046 36.0 2.0 26 247-272 152-177 (390)
83 PF03232 COQ7: Ubiquinone bios 36.8 37 0.00081 30.1 3.2 117 148-270 12-140 (172)
84 cd01041 Rubrerythrin Rubreryth 36.3 44 0.00094 27.1 3.3 56 141-196 76-133 (134)
85 PLN00179 acyl- [acyl-carrier p 35.5 28 0.00061 35.2 2.4 62 131-192 185-264 (390)
86 PRK10304 ferritin; Provisional 34.3 1.2E+02 0.0026 26.3 5.9 129 138-270 5-137 (165)
87 PTZ00184 calmodulin; Provision 32.8 1.2E+02 0.0026 23.2 5.0 69 112-180 21-95 (149)
88 smart00441 FF Contains two con 32.7 54 0.0012 22.6 2.8 45 98-144 3-54 (55)
89 PF08281 Sigma70_r4_2: Sigma-7 31.0 80 0.0017 21.5 3.5 35 123-165 3-37 (54)
90 PF03980 Nnf1: Nnf1 ; InterPr 30.3 54 0.0012 26.1 2.8 30 135-164 7-36 (109)
91 cd06432 GT8_HUGT1_C_like The C 30.0 25 0.00053 32.0 1.0 22 246-267 210-231 (248)
92 PF05974 DUF892: Domain of unk 29.4 80 0.0017 27.0 3.9 65 135-201 2-66 (159)
93 PF14098 SSPI: Small, acid-sol 28.9 63 0.0014 25.4 2.9 50 97-146 14-64 (65)
94 cd00907 Bacterioferritin Bacte 28.3 56 0.0012 26.3 2.7 59 140-198 83-142 (153)
95 TIGR02284 conserved hypothetic 26.8 78 0.0017 26.6 3.4 52 148-201 10-61 (139)
96 cd08536 SAM_PNT-Mae Sterile al 25.8 52 0.0011 25.2 2.0 56 97-164 9-65 (66)
97 KOG2880 SMAD6 interacting prot 25.6 36 0.00078 34.6 1.3 27 222-248 43-76 (424)
98 cd00904 Ferritin Ferritin iron 23.7 2.3E+02 0.0051 23.9 5.7 117 140-256 5-125 (160)
99 PRK09101 nrdB ribonucleotide-d 23.4 1.1E+02 0.0024 29.7 4.1 62 126-193 61-130 (376)
100 PF08763 Ca_chan_IQ: Voltage g 22.6 51 0.0011 23.3 1.3 10 252-261 15-24 (35)
101 cd01389 MATA_HMG-box MATA_HMG- 22.3 47 0.001 24.6 1.1 20 152-171 7-27 (77)
102 PF11254 DUF3053: Protein of u 21.6 65 0.0014 30.5 2.1 20 131-150 22-41 (229)
103 PLN02964 phosphatidylserine de 21.1 1.7E+02 0.0036 31.3 5.2 64 96-166 172-243 (644)
104 TIGR03092 SASP_sspI small, aci 20.2 1.1E+02 0.0024 24.2 2.8 50 97-146 13-63 (65)
105 PRK10236 hypothetical protein; 20.2 1.1E+02 0.0025 29.1 3.4 49 99-147 90-145 (237)
106 PF14663 RasGEF_N_2: Rapamycin 20.1 1.1E+02 0.0025 24.9 3.0 41 253-297 29-71 (115)
No 1
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=100.00 E-value=1.7e-150 Score=1055.44 Aligned_cols=242 Identities=89% Similarity=1.428 Sum_probs=240.3
Q ss_pred CccchhhHHhhccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHHHH
Q 022114 60 SKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIF 139 (302)
Q Consensus 60 ~~~~~k~a~~etlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~~F 139 (302)
+++++|.|++||||||||||||||+|++|||++||++++|+||+||++|||+||||+|||||++|+++|++|||++|++|
T Consensus 1 ~~~~~k~~~~etlLTPRFYTTDF~~m~~l~~~~id~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~F 80 (357)
T PLN02508 1 MRKGIKEAIKETLLTPRFYTTDFDEMEQLFNTEINKNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIF 80 (357)
T ss_pred CCccccchhhhcccCCccccccHHHHHhhccccCCCchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI 219 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfI 219 (302)
|||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||
T Consensus 81 idFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF~PkfI 160 (357)
T PLN02508 81 IEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFFKPKFI 160 (357)
T ss_pred HHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeeeCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHhh
Q 022114 220 FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVIL 299 (302)
Q Consensus 220 fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsVfa 299 (302)
|||||||||||||||||||||||+|||+||||||||||+||||||||||||+|||||||+||+||+|||||||||||||+
T Consensus 161 fYAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEnRHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfa 240 (357)
T PLN02508 161 FYATYLSEKIGYWRYITIYRHLQANPDYQLYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYV 240 (357)
T ss_pred ehhhHhhhhhhhhhHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 022114 300 HA 301 (302)
Q Consensus 300 Tm 301 (302)
||
T Consensus 241 TM 242 (357)
T PLN02508 241 TM 242 (357)
T ss_pred Hh
Confidence 99
No 2
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=4.1e-149 Score=1046.74 Aligned_cols=239 Identities=64% Similarity=1.157 Sum_probs=236.6
Q ss_pred CCCccchhhHHhhccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHH
Q 022114 58 KPSKKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQ 137 (302)
Q Consensus 58 ~~~~~~~k~a~~etlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~ 137 (302)
.+.++++|++++||||||||||||||+|+++ |++++|+||+||++|||+||||+|||||++|+++||+|||++|+
T Consensus 8 ~~~~~~~k~~~~etlLTPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~ 82 (355)
T PRK13654 8 SELRPGTKAALKETILTPRFYTTDFDAMAKL-----DLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRK 82 (355)
T ss_pred ccccccccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHH
Confidence 4557999999999999999999999999997 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 022114 138 IFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (302)
Q Consensus 138 ~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~Pk 217 (302)
+||||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||
T Consensus 83 ~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTfF~Pk 162 (355)
T PRK13654 83 EFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFFPPK 162 (355)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceeeeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHH
Q 022114 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSV 297 (302)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsV 297 (302)
|||||||||||||||||||||||||+|||+||||||+|||+||||||||||||++||||||+||+||+||||||||||||
T Consensus 163 fIfYatYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsV 242 (355)
T PRK13654 163 FIFYATYLSEKIGYWRYITIYRHLEKHPEHRFHPIFKFFENWCQDENRHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAV 242 (355)
T ss_pred eeeehhHhHhhhhHHHHHHHHHHHHhCcccccCchHHHHHHHhcccchhHHHHHHHHhcCchhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 022114 298 ILHA 301 (302)
Q Consensus 298 faTm 301 (302)
|+||
T Consensus 243 faTm 246 (355)
T PRK13654 243 FATM 246 (355)
T ss_pred Hhhe
Confidence 9999
No 3
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=100.00 E-value=2.7e-148 Score=1039.52 Aligned_cols=236 Identities=69% Similarity=1.212 Sum_probs=233.5
Q ss_pred cchhhHHhhccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHHHHHH
Q 022114 62 KSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVE 141 (302)
Q Consensus 62 ~~~k~a~~etlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~~Fid 141 (302)
-++|++++||||||||||||||+|+++ |++++|+||+||++|||+||||+|||||+||+++||+|||++|++|||
T Consensus 8 ~~~k~~~~etlLTPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~Fid 82 (351)
T CHL00185 8 LQTKTPAKETLLTPRFYTTDFDEMANY-----DISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVE 82 (351)
T ss_pred hcccchhhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHH
Confidence 468899999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhh
Q 022114 142 FLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFY 221 (302)
Q Consensus 142 FLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfIfY 221 (302)
|||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+||||||
T Consensus 83 FLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rkYTfF~PkfI~Y 162 (351)
T CHL00185 83 FLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFY 162 (351)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCceeeecccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHhhhc
Q 022114 222 ATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHA 301 (302)
Q Consensus 222 AtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsVfaTm 301 (302)
|||||||||||||||||||||+|||+||||||+|||+||||||||||||+|||||||+||+||+|||||||||||||+||
T Consensus 163 AtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEnRHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaTm 242 (351)
T CHL00185 163 ATYLSEKIGYWRYITIYRHLEKNPEYRIYPIFKFFESWCQDENRHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFATM 242 (351)
T ss_pred hhHHHhhhhhhHHhHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 022114 302 L 302 (302)
Q Consensus 302 ~ 302 (302)
-
T Consensus 243 y 243 (351)
T CHL00185 243 Y 243 (351)
T ss_pred e
Confidence 3
No 4
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=2.6e-148 Score=1035.60 Aligned_cols=236 Identities=72% Similarity=1.235 Sum_probs=234.0
Q ss_pred ccchhhHHhhccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHHHHH
Q 022114 61 KKSNKTAIKETLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFV 140 (302)
Q Consensus 61 ~~~~k~a~~etlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~~Fi 140 (302)
++++|+|++||||||||||||||+|+++ |++++|+||+||++|||+||||+|||||++|+++|++|||++|++||
T Consensus 1 ~~~~k~~~~etlLtPRFYTTDF~~m~~~-----d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~Fi 75 (337)
T TIGR02029 1 KKGTKTASQETLLTPRFYTTDFEEMANL-----DVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFI 75 (337)
T ss_pred CCccccchhhcccCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHH
Confidence 3688999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhh
Q 022114 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIF 220 (302)
Q Consensus 141 dFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfIf 220 (302)
||||||||||||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+|||||
T Consensus 76 dFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~ 155 (337)
T TIGR02029 76 EFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTFFRPKFIY 155 (337)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceeeeccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHhhh
Q 022114 221 YATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILH 300 (302)
Q Consensus 221 YAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsVfaT 300 (302)
||||||||||||||||||||||+|||+||||||+|||+||||||||||||++||||||+||+||+|||||||||||||+|
T Consensus 156 YAtYLSEKIGYwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaT 235 (337)
T TIGR02029 156 YATYLSEKIGYWRYITIYRHLEENPENQFYPIFKYFESWCQDENRHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYST 235 (337)
T ss_pred hhhHhHhhhhhHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 022114 301 A 301 (302)
Q Consensus 301 m 301 (302)
|
T Consensus 236 m 236 (337)
T TIGR02029 236 M 236 (337)
T ss_pred H
Confidence 9
No 5
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=100.00 E-value=2.2e-145 Score=1011.73 Aligned_cols=226 Identities=79% Similarity=1.295 Sum_probs=225.0
Q ss_pred ccCCCCccccChHHHhhhccccccccccHHHHHHHHHHHhhccCCcccccChhHHHHhhcCChHHHHHHHHHHHhhhhcc
Q 022114 71 TLLTPRFYTTDFDEMETLFNTEINKKLNQAEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAE 150 (302)
Q Consensus 71 tlLtPRFYTTDFd~m~~lf~~eid~~~~r~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~~r~~FidFLerScTaE 150 (302)
|||||||||||||+|+++ |++++|+||+||++|||+||||+|||||++|+++|++|||++|++||||||||||||
T Consensus 1 tlLtPRFYTTDF~~m~~~-----dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaE 75 (323)
T cd01047 1 TLLTPRFYTTDFDEMAAL-----DISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSE 75 (323)
T ss_pred CCCCCccccccHHHHHhc-----CCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhh
Confidence 799999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhhhhhhccccc
Q 022114 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIG 230 (302)
Q Consensus 151 FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfIfYAtYLSEKIG 230 (302)
||||||||||+||+|++||+|+|+|++||||||||||||||||+||||+||||||||+|+||||+|||||||||||||||
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF~PkfI~YatYLSEKIG 155 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYTFFKPKFIFYATYLSEKIG 155 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCceeeeCccceeehhHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCccchhhhhhHHHHHHHHHHHhhhc
Q 022114 231 YWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSVILHA 301 (302)
Q Consensus 231 YwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ll~g~~~kLW~RFFLLsVfaTm 301 (302)
||||||||||||+|||+||||||||||+||||||||||||++||||||+||+||+|||||||||||||+||
T Consensus 156 YwRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEnRHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTm 226 (323)
T cd01047 156 YWRYITIYRHLERNPENQFHPIFKYFENWCQDENRHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATM 226 (323)
T ss_pred hHHHHHHHHHHHhCcccccchHHHHHHHHhcccchhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
No 6
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=99.71 E-value=3.1e-18 Score=130.31 Aligned_cols=128 Identities=29% Similarity=0.452 Sum_probs=117.9
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc-----
Q 022114 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK----- 215 (302)
Q Consensus 141 dFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~----- 215 (302)
|.|..+|..|.+|..+|++++++.++.+|.++++|..||+||.+|++++.+.+.+.+.+.+.+++.....+++++
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEE 80 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhh
Confidence 578999999999999999999999877799999999999999999999999999999999999999999999998
Q ss_pred ----chhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHH
Q 022114 216 ----PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (302)
Q Consensus 216 ----PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lm 274 (302)
+..++...+..|+.+|..|..+.+.+.- | ++-+.|+.+++||.+|++.|..|+
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~-~-----~~~~~~~~l~~~E~~H~~~l~~ly 137 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKAPD-P-----EIRKLFEELAKEEKEHEDLLEKLY 137 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTS-H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-H-----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999999999999998752 2 345779999999999999998764
No 7
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.89 E-value=2.3e-09 Score=76.68 Aligned_cols=123 Identities=23% Similarity=0.307 Sum_probs=101.4
Q ss_pred HHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccc----cccCccccccchh
Q 022114 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFL----TKARKYTFFKPKF 218 (302)
Q Consensus 143 LerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfL----tk~k~YTfF~Pkf 218 (302)
|...+..|..+...|..+..+++ ||.++++|.-++.||.+|+..+++.+...|........ ...-......|.-
T Consensus 3 L~~~~~~E~~a~~~y~~~~~~~~--~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T cd00657 3 LNDALAGEYAAIIAYGQLAARAP--DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSDDPAE 80 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCccCHHH
Confidence 55667899999999999999994 99999999999999999999999999998877665431 1222345677888
Q ss_pred hhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHH
Q 022114 219 IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (302)
Q Consensus 219 IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~l 273 (302)
++...+..|+.|...|-.+.+.++ .|+ +-+.|...++||.+|.+.+..+
T Consensus 81 ~l~~~~~~E~~~~~~y~~~~~~~~-d~~-----~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 81 ALRAALEVEARAIAAYRELIEQAD-DPE-----LRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-ChH-----HHHHHHHHHHHHHHHHHHHHhh
Confidence 888889999999988888887775 333 5688999999999999988654
No 8
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.27 E-value=0.00048 Score=55.32 Aligned_cols=118 Identities=21% Similarity=0.270 Sum_probs=81.3
Q ss_pred HhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhhhhh
Q 022114 144 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYAT 223 (302)
Q Consensus 144 erScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfIfYAt 223 (302)
...+.-|-.|..+|..+++.. ++|.++++|..||.+|.+|+-++-+-+++.|.... +. . .+. ++..
T Consensus 4 ~~~~~~E~~~~~~Y~~la~~~--~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-------~~--~--~~~-~~~~ 69 (125)
T cd01044 4 RKFQKDEITEAAIYRKLAKRE--KDPENREILLKLAEDERRHAEFWKKFLGKRGVPPP-------RP--K--LKI-FFYK 69 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------Cc--c--HHH-HHHH
Confidence 345677999999999999988 79999999999999999999999999988776543 11 1 111 2223
Q ss_pred hhccccchhhHHHHHHHhhhCCCCcccchh---hhhHhhhhccccchhHHHHHHh
Q 022114 224 YLSEKIGYWRYITIYRHLKANPEFQCYPIF---KYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 224 YLSEKIGYwRYItIyRHLe~~Pe~rf~PIF---k~Fe~WCqDEnRHGdfFa~lmr 275 (302)
.|+.-.|+.--+-+--..|++--..+.-+. .-++.=-+||-.|...+..+++
T Consensus 70 ~l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 70 LLARIFGPTFVLKLLERGEERAIEKYDRLLEERPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHhHHHHHHHHHHhHHhhHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 455555654432222233444444444333 2567777999999998887764
No 9
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=96.66 E-value=0.0048 Score=50.06 Aligned_cols=119 Identities=22% Similarity=0.215 Sum_probs=97.0
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~Pk 217 (302)
..+.|......|......|..+++..+.. .|.++..|...|.+|..||+-+-+.+.... =.++
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i~----------------~~~~ 65 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELKRIAMEEAEHAARFAELLGKVS----------------EDTK 65 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----------------ccHH
Confidence 35778888899999999999999988766 899999999999999999999998764311 2456
Q ss_pred hhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
=++=+.+-.|+..+-.|--+++.-++-- .+-+..||+.=|.+|-+|++.+..+|..
T Consensus 66 ~~le~a~~~E~~~~~~~~~~~~~A~~eg---d~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 66 ENLEMMLEGEAGANEGKKDAATEAKAEG---LDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred HHHHHHHHhHHHHHHhHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777778888888888777777776554 4556788999999999999999988753
No 10
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=96.51 E-value=0.0075 Score=48.76 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=100.5
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchh
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF 218 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~Pkf 218 (302)
++-|.+....|+...-.|..+++-.++. -|.++..|.--|-+|..||.=+-+.|.+.|...+ .-...++ ...=
T Consensus 3 ~~~L~~a~~~E~~a~~~Y~~~a~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~----~~~~~~~--~~~~ 76 (134)
T cd01041 3 EKNLLAAFAGESQARNRYTYFAEKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT----GPPIGIG--DTLE 76 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----CCCCCcc--hHHH
Confidence 3567788899999999999999988766 6999999999999999999999999999887766 1111111 3455
Q ss_pred hhhhhhhccccch-hhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114 219 IFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 219 IfYAtYLSEKIGY-wRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr 275 (302)
++=..+=.|+..+ .+|=.++++-+++-+.. .-++|+.=+.||-+|++-|..+|.
T Consensus 77 ~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~---~~~~f~~i~~~E~~H~~~l~~~l~ 131 (134)
T cd01041 77 NLKAAIAGETYEYTEMYPEFAEVAEEEGFKE---AARSFEAIAEAEKVHAERYKKALE 131 (134)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6677777787655 77888888887666655 457788999999999999998774
No 11
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=95.96 E-value=0.0081 Score=42.95 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhh
Q 022114 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (302)
Q Consensus 137 ~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal 193 (302)
....+-|..+...|-.|.-.|+++.+.+ .+|++++++.-+..||++|..++++.+
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~~--~d~~~~~~~~~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQA--DDPELRRLLERILADEQRHAAWFRKLL 130 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456778888999999999999999988 499999999999999999999998764
No 12
>PF13668 Ferritin_2: Ferritin-like domain
Probab=95.82 E-value=0.0084 Score=48.12 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=50.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhc
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~ 194 (302)
-.+||.-+.+-|-.|.-.|+.+..++ +||.+..++.-++-.|+||++.||..|.
T Consensus 83 ~~~~L~~A~~~E~~~~~~Y~g~~~~~--~~~~~~~~~~~i~~~Ea~H~~~ir~ll~ 136 (137)
T PF13668_consen 83 DASFLRLAYTLEDVGVSAYKGAAPQI--EDPELKALAASIAGVEARHAAWIRNLLG 136 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788889999999999999999999 7999999999999999999999998875
No 13
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=95.76 E-value=0.0067 Score=46.09 Aligned_cols=123 Identities=18% Similarity=0.227 Sum_probs=75.9
Q ss_pred HHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccc---ccc-ccccc-ccc--------
Q 022114 142 FLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN---YAL-DLGFL-TKA-------- 208 (302)
Q Consensus 142 FLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~---l~l-DLgfL-tk~-------- 208 (302)
.|.....-|-.|--+|..++++. .+|.++++|.-+|+||.+|+..|...+...| +.. +.+.. ...
T Consensus 2 ~l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T cd01045 2 ILALAIKMEEEAAEFYLELAEKA--KDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKK 79 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHH
Confidence 34555667888999999999998 8899999999999999999999999999885 221 11110 000
Q ss_pred CccccccchhhhhhhhhccccchhhHHHHHHHhhhC-CCCcccchhhhhHhhhhccccchhHHHHH
Q 022114 209 RKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKAN-PEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (302)
Q Consensus 209 k~YTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~-Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~l 273 (302)
..-....+.-++-.----|+-+. ..|..+-.. ++-.. -+-|+.=-+||-+|.+.+.-+
T Consensus 80 ~~~~~~~~~~~l~~a~~~E~~~~----~~Y~~~~~~~~d~~~---~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 80 ALESLMDPLEALRLAIEIEKDAI----EFYEELAEKAEDPEV---KKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred HHHhccCHHHHHHHHHHHHHHHH----HHHHHHHHHcCCHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 00111222333333333444443 344444332 22233 344555668888888877543
No 14
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=95.75 E-value=0.019 Score=47.24 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=80.7
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchh--
Q 022114 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKF-- 218 (302)
Q Consensus 141 dFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~Pkf-- 218 (302)
.=+.-.|..|.+..+.|---+.-.+.++|.++++|..+|++|-+|+++|-+-+...|-.-...-..+. .+.+|.++.
T Consensus 19 ~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~-~~~~~~~~~~~ 97 (154)
T cd07908 19 LDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD-KFTYWTGKYVN 97 (154)
T ss_pred HHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc-cCCcCCccccC
Confidence 33445677788887777655555555799999999999999999999999999998754443322221 122233322
Q ss_pred -------hhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHH
Q 022114 219 -------IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (302)
Q Consensus 219 -------IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lm 274 (302)
++....-.|+-+--.|=-+.... ++-... +-++.=-.||-+|-+.|..++
T Consensus 98 ~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---~d~~~r---~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 98 YGESIKEMLKLDIASEKAAIAKYKRQAETI---KDPYIR---ALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 44555556666655555544422 332223 345666678999988887653
No 15
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=95.09 E-value=0.072 Score=42.88 Aligned_cols=133 Identities=21% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 022114 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (302)
Q Consensus 137 ~~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~ 215 (302)
...++.|..-...|+...+.|+-++..++.. -|.+++.|.-.|.||-+||.-|-+-+.+.|-...++-+++-+.. ..
T Consensus 4 ~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~--~~ 81 (153)
T cd00907 4 PKVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG--ED 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC--CC
Confidence 4578899999999999999999999999764 57899999999999999999999999999987777554432211 11
Q ss_pred chhhhhhhhhcccc-chhhHHHHHHHhhhCCC-CcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 216 PKFIFYATYLSEKI-GYWRYITIYRHLKANPE-FQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 216 PkfIfYAtYLSEKI-GYwRYItIyRHLe~~Pe-~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
+.=++ ..=+ .+.=.+..|+++-..-+ ..-...-++|+..-+||-+|..+|..++.-
T Consensus 82 ~~~~l-----~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~ 139 (153)
T cd00907 82 VPEML-----ENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL 139 (153)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 1111 12345667777643221 234455667777889999999999987764
No 16
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=94.82 E-value=0.047 Score=41.69 Aligned_cols=56 Identities=25% Similarity=0.451 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhh
Q 022114 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (302)
Q Consensus 135 ~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNka 192 (302)
...-..+-|.-.-..|-.+...|.++.+.+ .+|.++++|.-|+.||.+|.-.|.+.
T Consensus 81 ~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~--~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 81 TDENLEEALEMAIKEEKDAYEFYAELARKA--PDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344577778888888999999999999998 78999999999999999999887654
No 17
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=94.19 E-value=0.082 Score=47.25 Aligned_cols=60 Identities=35% Similarity=0.427 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 135 ~r~~FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
+.+.|...|+-++.-| +|||...--+.||. .=|-+++++.+.+|||++|..|-=..+++.
T Consensus 141 ~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l 204 (288)
T cd01049 141 TKESFAERLVAFAILEGIFFYSGFAAIFWLARRG--KMPGLAEIIELISRDESLHGDFACLLIREL 204 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CccchHHHhHHHHccHHHHHHHHHHHHHHH
Confidence 4456777776666666 58998888888875 789999999999999999999865555443
No 18
>PRK10635 bacterioferritin; Provisional
Probab=93.20 E-value=0.32 Score=41.80 Aligned_cols=134 Identities=14% Similarity=0.045 Sum_probs=115.9
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 022114 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (302)
Q Consensus 137 ~~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~ 215 (302)
...++.|-+-.+.|+.....|-=.++-+++- -+.+++-|..=|.+|-+||.-|-+-+-+.|...++.-+.+-+.-+ .
T Consensus 5 ~~vi~~LN~~L~~El~Ai~QY~~ha~~~~~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~--~ 82 (158)
T PRK10635 5 VKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNIGE--D 82 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCC--C
Confidence 3578999999999999999999888877654 566787777779999999999999999999999999987766553 7
Q ss_pred chhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr 275 (302)
++=++-+.+=.|+.+=.+|=.+.++-++.-++.-+-+|.| -..||-.|-|.+...+.
T Consensus 83 v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~---iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 83 VEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIE---ILADEEGHIDWLETELD 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998888888777666 47899999999987765
No 19
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=92.32 E-value=0.33 Score=37.25 Aligned_cols=131 Identities=16% Similarity=0.217 Sum_probs=104.4
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccC-hhHHHHhhccccchhhhhhhhhhhhccccc-----ccccccccccCcccc
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNY-----ALDLGFLTKARKYTF 213 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~~n-P~lae~F~lMaRDEARHAGFlNkal~Df~l-----~lDLgfLtk~k~YTf 213 (302)
|+=|.+-...|+.+...|+-++-.+++.| |.+++.|.-+|-+|-.|+.-+.+-+.+.|. ..++.-+++... +
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~--~ 78 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE--W 78 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS--S
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc--C
Confidence 44566777889999999999998887664 889999999999999999999999999999 555555555555 3
Q ss_pred ccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114 214 FKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 214 F~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr 275 (302)
-.|+-++=..-=.||-....|--+...-++.-+.....+ ++..-.+|.+|-..+...+.
T Consensus 79 ~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~---~~~~l~~~~~~~~~l~~~l~ 137 (142)
T PF00210_consen 79 TDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADF---LDEFLEEEEKHIWMLQAHLT 137 (142)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 389999988888999999999999998888766555544 43344677888877776664
No 20
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=92.28 E-value=0.071 Score=48.38 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=34.1
Q ss_pred ccchhh-HHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 151 FSGFLL-YKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 151 FSGflL-yKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
+|||.. +.-+++|. +-|-+++++.+.+|||+||-.|.=..+++.
T Consensus 160 ~sgF~~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l 204 (280)
T cd07911 160 ETGYYAWRTICEKRG--ILPGMQEGIRRLGDDESRHIAWGTFTCRRL 204 (280)
T ss_pred HHHHHHHHHHHhhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678865 33576655 789999999999999999998875555543
No 21
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=92.17 E-value=0.58 Score=42.58 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=45.7
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhc-ccChhHHHHhhccccchhhhhhhhhhhhcccccc
Q 022114 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLK-KTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199 (302)
Q Consensus 126 ~~~d~l~~~~r~~FidFLerScTaEF-SGflLyKEl~rrlk-~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~ 199 (302)
.+|+.|+++.|..+..-|--=..+|- .|.-|. .+.+.+. ..+|+..-.+..++=+|++|+-+-..-+..+|..
T Consensus 34 ~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~-~~~~~~~~~~~~e~~~~l~~q~~~EaiH~esYs~~l~tl~~~ 108 (280)
T cd07911 34 EDWEQLSEEERDLALRLCAGFIAGEEAVTLDLL-PLMMAMAAEGRLEEEMYLTQFLFEEAKHTDFFRRWLDAVGVS 108 (280)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 36778999888876543322222231 111222 2222111 2368888999999999999999888888777665
No 22
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=91.56 E-value=0.19 Score=38.16 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=45.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhh
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNk 191 (302)
..+-|+.+...|=.+.-.|.++.... .+|.++++|.-|+.||.+|..-|-+
T Consensus 87 ~~~~l~~a~~~E~~~~~~Y~~~~~~~--~d~~~~~~~~~l~~~E~~H~~~l~~ 137 (139)
T cd01045 87 PLEALRLAIEIEKDAIEFYEELAEKA--EDPEVKKLFEELAEEERGHLRLLEE 137 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888889999999999999987 7899999999999999999987654
No 23
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=91.55 E-value=0.1 Score=49.54 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=41.8
Q ss_pred HHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhh
Q 022114 143 LERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (302)
Q Consensus 143 LerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNka 192 (302)
++=-|.-|-...+-|..+++..+...|.|++|-+..|+||+||..|--+-
T Consensus 152 ~~y~~fqE~aT~v~y~nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~ 201 (297)
T cd01050 152 FVYTSFQELATRISHRNTARLAGAGDPVLAKLLGRIAADEARHEAFYRDI 201 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778899999999887669999999999999999999886554
No 24
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=91.36 E-value=0.17 Score=44.42 Aligned_cols=57 Identities=23% Similarity=0.419 Sum_probs=50.6
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccc
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 197 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~ 197 (302)
-.|-|.-+.-+|..+.--|.++..++ .|+.++++|.-||.||.||.|-+-+-+...+
T Consensus 25 ~~e~L~~Ai~~E~eA~~fY~~lae~~--~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~ 81 (176)
T COG1633 25 IEELLAIAIRGELEAIKFYEELAERI--EDEEIRKLFEDLADEEMRHLRKFEKLLEKLT 81 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888899999999999999999 8899999999999999999998877665544
No 25
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=91.23 E-value=0.11 Score=48.60 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=33.7
Q ss_pred cccchhhH-HHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhc
Q 022114 150 EFSGFLLY-KELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (302)
Q Consensus 150 EFSGflLy-KEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~ 194 (302)
=+|||..+ .=++++- +-|-+++++.+.+|||+||..|.=..++
T Consensus 178 f~sgF~~~~~~l~~~~--~mpgl~~~i~~I~RDE~~H~~fg~~l~~ 221 (311)
T PRK08326 178 AETGYYAWRKICVTRG--ILPGLQELVRRIGDDERRHIAWGTYTCR 221 (311)
T ss_pred HHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888875 4676654 6799999999999999999988744443
No 26
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=91.04 E-value=0.68 Score=41.86 Aligned_cols=145 Identities=17% Similarity=0.124 Sum_probs=86.8
Q ss_pred HHHhhcCChHHHHHHHHHHHhhhhcc-ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccccccc---
Q 022114 125 KEAADKMQGPLRQIFVEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (302)
Q Consensus 125 ~~~~d~l~~~~r~~FidFLerScTaE-FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~l--- 200 (302)
..+|..|+++.|..+..-|--=+.+| --|--+--.|.+.+ ++|++.-++...+-.|+.|+-+-+..+.-++-+.
T Consensus 42 ~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~~~~--~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~ 119 (281)
T PF00268_consen 42 IKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIMPEI--TSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKER 119 (281)
T ss_dssp HHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 45788899999887765443222222 11122335666667 6899999999999999999988887777666111
Q ss_pred --------ccccccccC-----ccc---cccchhhhhhhhhccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhcc
Q 022114 201 --------DLGFLTKAR-----KYT---FFKPKFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (302)
Q Consensus 201 --------DLgfLtk~k-----~YT---fF~PkfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDE 263 (302)
+...|.+.- .|+ =+.=+.|++ ++-|.|- |.=|..|+ +|.+. ..+--+-+=++-=+.||
T Consensus 120 ~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~--~~lEgi~f~s~F~~~~-~l~~~--g~m~g~~~~i~~I~RDE 194 (281)
T PF00268_consen 120 DEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVAS--VILEGILFYSGFAYIL-YLARQ--GKMPGLAEIIKLIMRDE 194 (281)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHH--HHHHHTTTHHHHHHHH-HHHHT--TSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHc--CcchhHHHHHHHHHHHH
Confidence 111221110 111 022233322 3447663 33444554 56653 34556666667778999
Q ss_pred ccchhHHHHHHhh
Q 022114 264 NRHGDFFSALMKA 276 (302)
Q Consensus 264 nRHGdfFa~lmra 276 (302)
.+|++|...+++.
T Consensus 195 ~~H~~~~~~l~~~ 207 (281)
T PF00268_consen 195 SLHVEFGIYLFRT 207 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888754
No 27
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=90.60 E-value=0.5 Score=37.84 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccc---ccc---
Q 022114 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFL---TKA--- 208 (302)
Q Consensus 136 r~~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfL---tk~--- 208 (302)
++..++.|-.-.+.|+.....|+-+...++.. -+.+++.|.-++.+|.+||--|-+-+.+.|-....+.- ..+
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~ 83 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCK 83 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhccc
Confidence 67789999999999999999999999999766 47899999999999999999999999999988876542 111
Q ss_pred -Ccc--ccccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHH
Q 022114 209 -RKY--TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSAL 273 (302)
Q Consensus 209 -k~Y--TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~l 273 (302)
..+ ....++=++.+.+=.|+..-..|--+.+.-+. -+ +..-+.++..-+||-.|=+.|.-|
T Consensus 84 ~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D---~~t~~ll~~~l~de~~h~~~~~~~ 147 (148)
T cd01052 84 CGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KD---PVTYDLALAILNEEIEHEEDLEEL 147 (148)
T ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CC---hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 34455667777777788777777777765432 33 444455666778999998877654
No 28
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=90.59 E-value=0.21 Score=47.78 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHh-hhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhh
Q 022114 133 GPLRQIFVEFLER-SCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (302)
Q Consensus 133 ~~~r~~FidFLer-ScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFl 189 (302)
++.++.|+.-|+- +|.-| +|||...--++||- +=|-+++++++.+|||..|..|.
T Consensus 196 ~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g--~M~G~~~~i~~I~RDE~~H~~f~ 255 (369)
T PRK07209 196 PENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQN--KMTGIAEQYQYILRDESMHLNFG 255 (369)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CcccHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665 56555 78988887888865 78999999999999999999773
No 29
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=89.39 E-value=0.78 Score=41.63 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhccCCccccc-ChhH--HHHhhcCChHHHHH-----HHHHHHhhhhccccchh--hHHHHhhhhc-cc-C
Q 022114 101 EFEALLQEFKTDYNQTHFVR-NKEF--KEAADKMQGPLRQI-----FVEFLERSCTAEFSGFL--LYKELGRRLK-KT-N 168 (302)
Q Consensus 101 E~~Aml~Efr~DyNr~HFvR-~~eF--~~~~d~l~~~~r~~-----FidFLerScTaEFSGfl--LyKEl~rrlk-~~-n 168 (302)
+|++-. ...-|.++..|-- --.| ...|+.|+++.|.+ ++-|+..-.-.|- +.+ .+.-|.+..- .. .
T Consensus 34 dWd~~~-~~~~~~~~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~-~l~~~~~~~l~~~~~~~~~~ 111 (304)
T PF11583_consen 34 DWDAPD-DEDFDPDRPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQ-GLVNPAFRMLARDRFPSDPD 111 (304)
T ss_dssp -----G-GTT--TTS-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHTT-STTTT-
T ss_pred hhhhhh-cccCCCcccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCC
Confidence 466555 3344666666521 1123 57899999998765 4556655555553 111 1133333332 22 2
Q ss_pred hhHHHHhhccccchhhhhhhhhhhhcccc----ccccccccccc----Ccccccc----chhhhhhhhhccccchhhHHH
Q 022114 169 PVVAEIFSLMSRDEARHAGFLNKGLSDFN----YALDLGFLTKA----RKYTFFK----PKFIFYATYLSEKIGYWRYIT 236 (302)
Q Consensus 169 P~lae~F~lMaRDEARHAGFlNkal~Df~----l~lDLgfLtk~----k~YTfF~----PkfIfYAtYLSEKIGYwRYIt 236 (302)
+...+-..--..||+||+=.-.+.+...| +....+...-. .--..+. +-..|=.+.++|-+-. .
T Consensus 112 ~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~Ee~i~----~ 187 (304)
T PF11583_consen 112 DDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRRLARLLPPWERGLLFFAFALVAEEIID----A 187 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHHHHTS-SHHHHHHHHHHHHHHHHHSBH----H
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHHHHHhcccccchHHHHHHHHHHHHHHH----H
Confidence 33444444557999999988888887777 32211111111 1111222 2234445666776644 2
Q ss_pred HHHHhhhCCCCcccchhhhhHhhh-hccccchhHHHHHHhhC
Q 022114 237 IYRHLKANPEFQCYPIFKYFENWC-QDENRHGDFFSALMKAQ 277 (302)
Q Consensus 237 IyRHLe~~Pe~rf~PIFk~Fe~WC-qDEnRHGdfFa~lmraq 277 (302)
..|.+.+.|. +.|+.+-.-.=. +||.||--|+..+++..
T Consensus 188 ~~~~~~~D~~--iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 188 YQREIARDET--IQPLVRQVMRIHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHHHHT-SS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665 789987665554 79999999999888763
No 30
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=89.31 E-value=0.9 Score=40.69 Aligned_cols=141 Identities=19% Similarity=0.187 Sum_probs=81.2
Q ss_pred HHHhhcCChHHHHHHHHHHHh-----hhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccc
Q 022114 125 KEAADKMQGPLRQIFVEFLER-----SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA 199 (302)
Q Consensus 125 ~~~~d~l~~~~r~~FidFLer-----ScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~ 199 (302)
.++|..|+++.|..+..-|-- |+.++. + .++..+.- .+|+.+-.+..-+-+|++|+-+-+.-+..++..
T Consensus 34 ~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~----~-~~~~~~~~-~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~ 107 (288)
T cd01049 34 LKDWEKLTEAERHFIKRVLAFLAALDSIVGEN----L-VELFSRHV-QIPEARAFYGFQAFMENIHSESYSYILDTLGKD 107 (288)
T ss_pred HHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHh----H-HHHHHHHc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457888999888877654322 222222 1 12222221 589999999999999999999999888887764
Q ss_pred ----------cccccccccCcc--------------ccccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhh
Q 022114 200 ----------LDLGFLTKARKY--------------TFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKY 255 (302)
Q Consensus 200 ----------lDLgfLtk~k~Y--------------TfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~ 255 (302)
.+...|.+.-++ ++. -+.|.| ++-|.|=+-==.++...|.++. ..-=+-+-
T Consensus 108 ~e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~s~F~~~~~l~~~g--~m~g~~~~ 182 (288)
T cd01049 108 EERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFA-ERLVAF--AILEGIFFYSGFAAIFWLARRG--KMPGLAEI 182 (288)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHCC--CccchHHH
Confidence 122233222111 111 122222 4555553321122334566653 22233344
Q ss_pred hHhhhhccccchhHHHHHHhh
Q 022114 256 FENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 256 Fe~WCqDEnRHGdfFa~lmra 276 (302)
+..=+.||.+|+.|...+++.
T Consensus 183 i~~I~RDE~~H~~~~~~~~~~ 203 (288)
T cd01049 183 IELISRDESLHGDFACLLIRE 203 (288)
T ss_pred hHHHHccHHHHHHHHHHHHHH
Confidence 555578999999998877654
No 31
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=89.00 E-value=2.2 Score=34.80 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=94.2
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccch
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPK 217 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~Pk 217 (302)
.++-|.+=...|+.....|--++....+. -|.+++.|.-.|.+|..||.-+-+-|.+.|..+++.-+.+.+. ++=.|.
T Consensus 4 ~~~~Ln~~~~~El~A~~~Yl~~a~~~~~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-~~~~~~ 82 (156)
T cd01055 4 LEKALNEQINLELYSSYLYLAMAAWFDSKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-EFESLL 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc-ccCCHH
Confidence 45666677788888888888777766554 7999999999999999999999999999999998877765442 333444
Q ss_pred hhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 218 FIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 218 fIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
=++=...=.||----.|-.|.+.-+++-+.. ..++|+.--.||-.|.+-+..++.-
T Consensus 83 ~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~---~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 83 EVFEAALEHEQKVTESINNLVDLALEEKDYA---TFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443334444443445555666655554433 4466664457888888888777654
No 32
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=88.99 E-value=0.4 Score=39.46 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=46.1
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhh
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNka 192 (302)
..+-|......|-.+.-.|+++.+++ .+|.+++++..++.||.+|.-.|-+.
T Consensus 102 ~~~~L~~~~~~E~~ai~~Y~~~~~~~--~d~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 102 IKEMLKLDIASEKAAIAKYKRQAETI--KDPYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888899999999999999987 78999999999999999999877543
No 33
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=87.67 E-value=0.32 Score=43.88 Aligned_cols=43 Identities=35% Similarity=0.412 Sum_probs=35.4
Q ss_pred ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcc
Q 022114 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 195 (302)
Q Consensus 151 FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~D 195 (302)
+|||....-++++. .=|-+++++.+..|||++|..|.-..++.
T Consensus 165 ~s~F~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~l~~~ 207 (281)
T PF00268_consen 165 YSGFAYILYLARQG--KMPGLAEIIKLIMRDESLHVEFGIYLFRT 207 (281)
T ss_dssp HHHHHHHHHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888777788765 67999999999999999999887665443
No 34
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=87.44 E-value=1.9 Score=40.04 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHhhcCChHHHHHHHHHHHh-hhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccccccc---
Q 022114 125 KEAADKMQGPLRQIFVEFLER-SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL--- 200 (302)
Q Consensus 125 ~~~~d~l~~~~r~~FidFLer-ScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~l--- 200 (302)
..+|.+|+++.|..+..-|-- +..-...|.-+-..+++.+ ++|+++-.+..++-.|+.|+-.-...+.-++..-
T Consensus 45 ~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~ 122 (324)
T PRK09614 45 LKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNLMPDI--TTPEEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEID 122 (324)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence 457889999999977654432 1112222333345666667 5799999999999999999977666666554432
Q ss_pred -------ccccccccCc--cccccc---h----hhhhhhhhccccch-hhHHHHHHHhhhCCCCcccchhhhhHhhhhcc
Q 022114 201 -------DLGFLTKARK--YTFFKP---K----FIFYATYLSEKIGY-WRYITIYRHLKANPEFQCYPIFKYFENWCQDE 263 (302)
Q Consensus 201 -------DLgfLtk~k~--YTfF~P---k----fIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDE 263 (302)
+...|.++-+ .+++.+ + -+.+ .++-|.|=+ .=|-.|| .|.++ ...--+=+-.+-=..||
T Consensus 123 ~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~-~~~lEgi~f~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE 198 (324)
T PRK09614 123 EAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVA-SVFLEGFLFYSGFYYPL-YLARQ--GKMTGTAQIIRLIIRDE 198 (324)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHhC--CCcccHHHHHHHHHhhh
Confidence 2333433211 111221 1 1112 333454433 3333444 77774 34444555555567899
Q ss_pred ccchhHHHHHHh----hCccchh
Q 022114 264 NRHGDFFSALMK----AQPQFLN 282 (302)
Q Consensus 264 nRHGdfFa~lmr----aqP~ll~ 282 (302)
..||.|...+++ ..|++..
T Consensus 199 ~~H~~f~~~l~~~l~~e~~~~~~ 221 (324)
T PRK09614 199 SLHGYYIGYLFQEGLEELPELEQ 221 (324)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhh
Confidence 999999986655 6666543
No 35
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=87.26 E-value=0.59 Score=45.43 Aligned_cols=126 Identities=31% Similarity=0.408 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccC
Q 022114 134 PLRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKAR 209 (302)
Q Consensus 134 ~~r~~FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k 209 (302)
++.+-+..=++-||.=| +|||-+.--++||- +-|-.++++++..|||+.|--|+-.-....--..+-
T Consensus 171 ~~~~~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~--kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~------- 241 (348)
T COG0208 171 PLEEFLLKLVVASVILEGILFYSGFAYPLYLARRG--KMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPE------- 241 (348)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-------
Confidence 34555556666677767 79999999999998 789999999999999999987654333222222211
Q ss_pred ccccccchhhh------------hhhhhcc-cc--------chhhHHHHHHHhhh------CCCCcccchhhhhHhhhhc
Q 022114 210 KYTFFKPKFIF------------YATYLSE-KI--------GYWRYITIYRHLKA------NPEFQCYPIFKYFENWCQD 262 (302)
Q Consensus 210 ~YTfF~PkfIf------------YAtYLSE-KI--------GYwRYItIyRHLe~------~Pe~rf~PIFk~Fe~WCqD 262 (302)
-.|=.-.++|+ |+.||-+ .+ .|-||++==| |++ .|+.. -|+ .|-+.|-.-
T Consensus 242 ~~t~e~~~~~~~l~~~ave~E~~y~~~~~~~~~Glt~d~~~~Yi~y~ankr-L~~lG~~~~y~~~~-NP~-~~~~~~~~~ 318 (348)
T COG0208 242 LWTAELKDEIYDLFKEAVELEKEYAEYLYPGILGLTEDLVKQYIRYNANKR-LQNLGLEPLYPAEE-NPI-PWIELSLSA 318 (348)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH-HHHcCCCCCCCCCC-Cch-HHHHhhccc
Confidence 11112234444 7777776 44 4888887544 222 12222 466 888888763
Q ss_pred cccchhHHHH
Q 022114 263 ENRHGDFFSA 272 (302)
Q Consensus 263 EnRHGdfFa~ 272 (302)
. -+-|||..
T Consensus 319 ~-~~~dFFe~ 327 (348)
T COG0208 319 D-EKTDFFEG 327 (348)
T ss_pred c-ccCCcccc
Confidence 3 66688863
No 36
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=87.12 E-value=0.46 Score=41.85 Aligned_cols=110 Identities=20% Similarity=0.281 Sum_probs=77.1
Q ss_pred hccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccc------------cccccccccCcccccc
Q 022114 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA------------LDLGFLTKARKYTFFK 215 (302)
Q Consensus 148 TaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~------------lDLgfLtk~k~YTfF~ 215 (302)
+.|+.-.-+|+--..-+ ++|.+.+...-|+++|.+|--..|+.|.+.|+- .=||.+|. .--
T Consensus 10 AGE~gA~~IY~gQ~~~~--~~~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~ta-----l~G 82 (165)
T cd01042 10 AGEVGAVRIYRGQLAVA--RDPAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTA-----LLG 82 (165)
T ss_pred cchHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH-----hhC
Confidence 45666777888666666 679999999999999999999999999998653 33344442 123
Q ss_pred chhhhhhhhhccccchhhHHHHHHHhh----hCCCCcccchhhhhHhhhhccccchhHHH
Q 022114 216 PKFIFYATYLSEKIGYWRYITIYRHLK----ANPEFQCYPIFKYFENWCQDENRHGDFFS 271 (302)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe----~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa 271 (302)
+++.+..|.=-|+. |-+|++ +=|+..-..+.+-++.-++||-+|.|.=.
T Consensus 83 ~~~a~~~~~avE~~-------V~~Hy~~ql~~L~~~~d~~l~~~l~~~r~DE~~H~d~A~ 135 (165)
T cd01042 83 KKAAMACTAAVETV-------VEEHYNDQLRELPAQPDKELRAIIEQFRDDELEHADIAE 135 (165)
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555542 444443 33533235677888999999999999643
No 37
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=86.26 E-value=0.67 Score=43.00 Aligned_cols=54 Identities=28% Similarity=0.291 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhh
Q 022114 137 QIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKG 192 (302)
Q Consensus 137 ~~FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNka 192 (302)
+.+...|+-+..-| +|||...--+.+|. +=|-++++..+.+|||+.|..|.=..
T Consensus 151 ~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~~~l 208 (324)
T PRK09614 151 KILRKAAVASVFLEGFLFYSGFYYPLYLARQG--KMTGTAQIIRLIIRDESLHGYYIGYL 208 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcccHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555555555555 68888777888865 78999999999999999999886533
No 38
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=83.63 E-value=0.7 Score=44.90 Aligned_cols=47 Identities=30% Similarity=0.430 Sum_probs=36.4
Q ss_pred hccccchhhHHHHhhhhcc-cChhHHHHhhccccchhhhhhhhhhhhc
Q 022114 148 TAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLS 194 (302)
Q Consensus 148 TaEFSGflLyKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkal~ 194 (302)
--|-.-++.|..++|..+. ..|.|++|-+.+|+||+||..|--+-++
T Consensus 162 fQE~AT~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~ 209 (330)
T PF03405_consen 162 FQERATQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVE 209 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455556777777777643 5899999999999999999998765443
No 39
>PF13668 Ferritin_2: Ferritin-like domain
Probab=83.11 E-value=3.7 Score=33.00 Aligned_cols=116 Identities=20% Similarity=0.347 Sum_probs=84.2
Q ss_pred hhhccccchhhHHHHhhhh------cccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccc-c----
Q 022114 146 SCTAEFSGFLLYKELGRRL------KKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTF-F---- 214 (302)
Q Consensus 146 ScTaEFSGflLyKEl~rrl------k~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTf-F---- 214 (302)
-.+.|.-+.=.|+....+. ...+|.+.+++.-|+.+|..|.-+|.++++ |-.. .....|.| |
T Consensus 9 Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~-----~~~~~~~~~~~~~~ 81 (137)
T PF13668_consen 9 ALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRP-----VPPPAYDFPFDPFT 81 (137)
T ss_pred HHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCC-----CCCCccccccCCCC
Confidence 3456666666777777654 346899999999999999999999999996 2111 13344554 1
Q ss_pred cchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHH
Q 022114 215 KPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALM 274 (302)
Q Consensus 215 ~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lm 274 (302)
.|.=++=+-+.-|+.|.-=|..+-.+++ +|+ +-+-+..=...|.||--.+..++
T Consensus 82 ~~~~~L~~A~~~E~~~~~~Y~g~~~~~~-~~~-----~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 82 DDASFLRLAYTLEDVGVSAYKGAAPQIE-DPE-----LKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 2333444566779999999999999887 555 34667777888999988887765
No 40
>PLN02492 ribonucleoside-diphosphate reductase
Probab=82.81 E-value=0.82 Score=42.81 Aligned_cols=49 Identities=31% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhh
Q 022114 139 FVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (302)
Q Consensus 139 FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFl 189 (302)
+..-|+-++.-| +|||...--+++|- +-|-++++..+.+|||+.|..|.
T Consensus 151 ~~~~lva~~~lEgi~F~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~ 203 (324)
T PLN02492 151 FAERLVAFACVEGIFFSGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFA 203 (324)
T ss_pred HHHHHHHHHhhhHHhhhhhHHHHHHHHHcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 444444333334 68887777888865 78999999999999999999776
No 41
>PLN02492 ribonucleoside-diphosphate reductase
Probab=82.64 E-value=2.7 Score=39.46 Aligned_cols=144 Identities=16% Similarity=0.133 Sum_probs=78.5
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccChhHHHHhhccccchhhhhhh---hhhhhcc------
Q 022114 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF---LNKGLSD------ 195 (302)
Q Consensus 126 ~~~d~l~~~~r~~FidFLerScTaEF-SGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGF---lNkal~D------ 195 (302)
++|..|+++.|..+..-|---..+|- .|.-+...+...+ ++|+++..+..++--|+.|+-- |..++..
T Consensus 45 ~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~ 122 (324)
T PLN02492 45 KDWEKLTDDERHFISHVLAFFAASDGIVLENLAARFMKEV--QVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKD 122 (324)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 46788999999877654433222232 2333445666666 6899999999999999999854 4555431
Q ss_pred --cccccccccccccCccc--ccc-c-----hhhhhhhhhccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhccc
Q 022114 196 --FNYALDLGFLTKARKYT--FFK-P-----KFIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDEN 264 (302)
Q Consensus 196 --f~l~lDLgfLtk~k~YT--fF~-P-----kfIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEn 264 (302)
|+.-.++..|.|+-.|. +.+ + +.|-+ ++-|.|= |.=|-.|| .|.++ ...--+=+-.+-=..||.
T Consensus 123 ~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~--~~lEgi~F~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~ 197 (324)
T PLN02492 123 RLFNAIETIPCVAKKADWALRWIDSSASFAERLVAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 197 (324)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHH--HhhhHHhhhhhHHHHH-HHHHc--CCCcchHHHHHHHHhhHH
Confidence 34334566666553321 000 0 01111 1123322 12222333 44442 222222233333457999
Q ss_pred cchhHHHHHHhh
Q 022114 265 RHGDFFSALMKA 276 (302)
Q Consensus 265 RHGdfFa~lmra 276 (302)
.||.+...|.+.
T Consensus 198 ~H~~~~~~l~~~ 209 (324)
T PLN02492 198 LHCDFACLLYSL 209 (324)
T ss_pred HHHHHHHHHHHH
Confidence 999999876654
No 42
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=82.22 E-value=0.82 Score=42.97 Aligned_cols=49 Identities=31% Similarity=0.260 Sum_probs=36.9
Q ss_pred HHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhh
Q 022114 139 FVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (302)
Q Consensus 139 FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFl 189 (302)
|..-|+.+..-| +|||...--+++|. .-|-+++++.+.+|||+.|..|.
T Consensus 162 ~~~~lv~~~~lEgi~F~sgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~f~ 214 (330)
T PTZ00211 162 FAERLVAFAAVEGIFFSGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHTDFA 214 (330)
T ss_pred HHHHHHHHHHhhhHHhhhhHHHHHHHHhcC--CCcchHHHHHHHHhhHHHHHHHH
Confidence 344444443344 67877777787765 78999999999999999999886
No 43
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=81.48 E-value=1.2 Score=47.96 Aligned_cols=123 Identities=13% Similarity=0.241 Sum_probs=74.8
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhhh
Q 022114 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIF 220 (302)
Q Consensus 141 dFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfIf 220 (302)
|=|....-=|=.|.-.|++++.+. .||.++++|..||+.|.+|+-.|.+-+.+. ++- +...|..+.. .+
T Consensus 863 eil~~Ai~mE~~g~~FY~~~A~~a--~~~~~K~lF~~LA~eE~~H~~~l~~~~~~~---~~~----~~~~~~~~~~--~~ 931 (1006)
T PRK12775 863 EAIRTAFEIELGGMAFYARAAKET--SDPVLKELFLKFAGMEQEHMATLARRYHAA---APS----PTEGFKIERA--AI 931 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCC----cccccccchh--hh
Confidence 445556667889999999999998 899999999999999999999887776531 010 1122322110 01
Q ss_pred hhh---h---hccccch-----hhHHHHHHHhhhCCCCcccch-hhhhHhhhhccccchhHHHHHHhh
Q 022114 221 YAT---Y---LSEKIGY-----WRYITIYRHLKANPEFQCYPI-FKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 221 YAt---Y---LSEKIGY-----wRYItIyRHLe~~Pe~rf~PI-Fk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
+.. + ..+-+.. .+-|..|+.|.++-+.- .. =+.|+.=-+-|-.|=..+..+|..
T Consensus 932 ~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~--e~~k~l~~~LA~EEk~Hl~~L~~~~d~ 997 (1006)
T PRK12775 932 MAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDG--SVERQLYKELAAEEREHVALLTTEFER 997 (1006)
T ss_pred hhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0011111 24566777777664432 11 144555566678887777766654
No 44
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=80.46 E-value=3.8 Score=38.63 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=80.5
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcc---------
Q 022114 126 EAADKMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD--------- 195 (302)
Q Consensus 126 ~~~d~l~~~~r~~FidFLerScTaEF-SGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~D--------- 195 (302)
++|..|+++.|..+..-|---..+|- .|..+...+...+ ..|+++..+..++=-|+.|+---.-.+.-
T Consensus 56 ~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~ 133 (330)
T PTZ00211 56 KDWEKLNDGERHFIKHVLAFFAASDGIVLENLAQRFMREV--QVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKD 133 (330)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 46889999999988765533222222 2333444555666 67999999999999999998644333332
Q ss_pred --cccccccccccccCcccc--c--cch----hhhhhhhhccccc-hhhHHHHHHHhhhCCCCcccchhhhhHhhhhccc
Q 022114 196 --FNYALDLGFLTKARKYTF--F--KPK----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYPIFKYFENWCQDEN 264 (302)
Q Consensus 196 --f~l~lDLgfLtk~k~YTf--F--~Pk----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEn 264 (302)
|+--.+...|.++-.|.- + .+. .|.+ ++-|.|= |.=|..|| .|.++ ...--+=+-++-=..||.
T Consensus 134 ~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~lv~~--~~lEgi~F~sgF~~~~-~l~~~--g~m~g~~~~i~~I~RDE~ 208 (330)
T PTZ00211 134 RLFHAIETIPAIKKKAEWAAKWINSSNSFAERLVAF--AAVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 208 (330)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHHHHH--HHhhhHHhhhhHHHHH-HHHhc--CCCcchHHHHHHHHhhHH
Confidence 333344555554433210 0 011 1111 2344442 22233333 55552 334444444555578999
Q ss_pred cchhHHHHHHh
Q 022114 265 RHGDFFSALMK 275 (302)
Q Consensus 265 RHGdfFa~lmr 275 (302)
.||.+...|.+
T Consensus 209 ~H~~f~~~l~~ 219 (330)
T PTZ00211 209 LHTDFACLLYS 219 (330)
T ss_pred HHHHHHHHHHH
Confidence 99999976665
No 45
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=79.96 E-value=1.7 Score=42.21 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhh
Q 022114 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNK 191 (302)
Q Consensus 135 ~r~~FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNk 191 (302)
.++.+.+-|+-|+.-| +|||...--+++|- +-|-++++..+.+|||+.|..|.=.
T Consensus 233 ~~~~~~~~lv~~~~lEgi~Fys~Fa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~~~ 291 (410)
T PRK12759 233 TRRGLGLCLAKTVFNEGVALFASFAMLLNFQRFG--KMKGMGKVVEWSIRDESMHVEGNAA 291 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeHHHHHHHHHHHHHHHHHHHHH
Confidence 3434444444444444 58888888888875 6899999999999999999988533
No 46
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=78.25 E-value=8.3 Score=35.12 Aligned_cols=112 Identities=16% Similarity=0.197 Sum_probs=76.4
Q ss_pred cccChHHHhhhccccccccccHHHHH---HHHHHHhhccCCcccccChhHH-HHhhcCChHHHHHHHHHHHhhhhccccc
Q 022114 78 YTTDFDEMETLFNTEINKKLNQAEFE---ALLQEFKTDYNQTHFVRNKEFK-EAADKMQGPLRQIFVEFLERSCTAEFSG 153 (302)
Q Consensus 78 YTTDFd~m~~lf~~eid~~~~r~E~~---Aml~Efr~DyNr~HFvR~~eF~-~~~d~l~~~~r~~FidFLerScTaEFSG 153 (302)
|..+-+=+++| ....+||+. .+++-|++-.-.--=.+.+.+. +....+....-..++|=|.=+-.-|--|
T Consensus 44 Y~~~~~Lv~~m------~~LarEEL~HFeqV~~im~~Rgi~l~~~~~~~Ya~~L~k~vR~~~p~~llD~Llv~alIEARS 117 (180)
T cd07910 44 YPEKPELVEAM------SDLAREELQHFEQVLKIMKKRGIPLGPDSKDPYASGLRKLVRKGEPERLLDRLLVAALIEARS 117 (180)
T ss_pred cCCcHhHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcccCChHHHHHHHHHHHHHHHHh
Confidence 55666667776 556888887 7777777644322222333453 3334444445566888877666667777
Q ss_pred hhhHHHHhhhhcccChhHHHHhhccccchhhhhh-hhhhhhcccc
Q 022114 154 FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFN 197 (302)
Q Consensus 154 flLyKEl~rrlk~~nP~lae~F~lMaRDEARHAG-FlNkal~Df~ 197 (302)
|==|+=|+..+ ..++|++.+.-+-+.||||-+ |+.-|-.-++
T Consensus 118 cERF~lLa~~l--~D~eL~~FY~~Ll~SEarHy~~yl~LA~~y~~ 160 (180)
T cd07910 118 CERFALLAPAL--PDPELKKFYRGLLESEARHYELFLDLARKYFD 160 (180)
T ss_pred HHHHHHHhccC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 77888888887 568999999999999999965 6666655444
No 47
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=77.70 E-value=8.9 Score=31.83 Aligned_cols=136 Identities=18% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHhhhhcc-cChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccc
Q 022114 136 RQIFVEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFF 214 (302)
Q Consensus 136 r~~FidFLerScTaEFSGflLyKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF 214 (302)
+...++.|-.-...|++-...|.=.+.=.+. .-+.++..|..-|-||-.||+-|-.-+.+.|-..+++-+..-+ .. .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~-~~-~ 81 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQKNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLR-IG-E 81 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCC-CC-C
Confidence 4567899999999999999888877665533 2477788888889999999999999999999999988665433 22 3
Q ss_pred cchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 215 KPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 215 ~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
.+.=++=..+=.|+-.-.+|=-+.+--+...|+.-..+ |+...+||-+|-+++.+.+.-
T Consensus 82 ~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~l---l~~~i~eee~h~~~l~~~l~~ 140 (157)
T TIGR00754 82 TVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDL---LEEILEDEEEHIDWLETQLEL 140 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666555555444444445556555554 556679999999999988874
No 48
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=77.32 E-value=9.3 Score=35.92 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=77.9
Q ss_pred HHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc--c--ChhHHHHhhccccchhhhhhhhhhhhcccccccc
Q 022114 126 EAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK--T--NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (302)
Q Consensus 126 ~~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~--~--nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lD 201 (302)
.+|..|++..|..+.--|--=..+|-. | -..|..-+.. . .|.+.-.....+-+||+|+-+-..-+..+|..=+
T Consensus 51 ~dw~~Lt~~Er~~~~~ila~f~~~d~~--V-~~nl~~~i~~~~~~~~~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~~ 127 (311)
T PRK08326 51 EDWEKLSDEERDYATRLCAQFIAGEEA--V-TLDIQPLISAMAAEGRLEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTED 127 (311)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHhhhHH--H-HHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 467789998888765332221223311 1 1222221211 1 3788888889999999999998888876666544
Q ss_pred cccccc-cCccc--cc---------------cchhhh-h--hhhhccccc-hhhHHHHHHHhhhCCCCcccc-hhhhhHh
Q 022114 202 LGFLTK-ARKYT--FF---------------KPKFIF-Y--ATYLSEKIG-YWRYITIYRHLKANPEFQCYP-IFKYFEN 258 (302)
Q Consensus 202 LgfLtk-~k~YT--fF---------------~PkfIf-Y--AtYLSEKIG-YwRYItIyRHLe~~Pe~rf~P-IFk~Fe~ 258 (302)
+..+.+ ...|. ++ +.+++- . ..++-|.|= |-=|..|+--|++.+ .-| +=+=++-
T Consensus 128 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF~~~~~~l~~~~---~mpgl~~~i~~ 204 (311)
T PRK08326 128 LSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGYYAWRKICVTRG---ILPGLQELVRR 204 (311)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcHHHHHHH
Confidence 322211 00010 00 011110 0 123456643 433334333444422 222 2233444
Q ss_pred hhhccccchhHHHHHHh----hCccch
Q 022114 259 WCQDENRHGDFFSALMK----AQPQFL 281 (302)
Q Consensus 259 WCqDEnRHGdfFa~lmr----aqP~ll 281 (302)
=+.||.+|+.|...+++ .+|.+.
T Consensus 205 I~RDE~~H~~fg~~l~~~l~~e~p~~~ 231 (311)
T PRK08326 205 IGDDERRHIAWGTYTCRRLVAADDSNW 231 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 57899999999988776 466553
No 49
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=77.03 E-value=1.3 Score=41.73 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=32.9
Q ss_pred ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhh-hhhccc
Q 022114 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN-KGLSDF 196 (302)
Q Consensus 151 FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN-kal~Df 196 (302)
+|||-..--+.+|- +-|-++++..+.+|||+.|.-|.= +..+.+
T Consensus 166 ysgF~~~~~l~~~g--~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~ 210 (322)
T PRK13967 166 YSGFYLPMYWSSRG--KLTNTADLIRLIIRDEAVHGYYIGYKCQRGL 210 (322)
T ss_pred HHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57776666666644 789999999999999999988543 343443
No 50
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=76.14 E-value=1.2 Score=36.96 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=39.9
Q ss_pred cccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccc
Q 022114 150 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (302)
Q Consensus 150 EFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lD 201 (302)
|--|.=.|..+..+.. ..++|..++++|.+|...|.+-+...|+...
T Consensus 12 Ek~a~~~Y~~~~~k~~-----~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p 58 (135)
T cd01048 12 EKLARDVYLALYEKFG-----GLRPFSNIAESEQRHMDALKTLLERYGLPDP 58 (135)
T ss_pred HHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4456667888888873 6889999999999999999999999998753
No 51
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=75.40 E-value=6.5 Score=38.28 Aligned_cols=151 Identities=15% Similarity=0.172 Sum_probs=84.7
Q ss_pred HHhh--cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccChhHHHHhhccccchhhhhh---hhhhhh----cc
Q 022114 126 EAAD--KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG---FLNKGL----SD 195 (302)
Q Consensus 126 ~~~d--~l~~~~r~~FidFLerScTaEF-SGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAG---FlNkal----~D 195 (302)
++|. +|+++.|..+..-|---..++- .|..+...+.+.+ ++|++.-.+..++--|+.|+- .|+.++ .+
T Consensus 132 ~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~--~~pE~~~~~~~q~~~E~iHsesYs~il~tl~~~~~~ 209 (410)
T PRK12759 132 TDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLF--KNNEIRNMLGSFAAREGIHQRAYALLNDTLGLPDSE 209 (410)
T ss_pred HHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 4674 6999999887654433222222 3333445566666 579999999999999999995 455555 12
Q ss_pred cccccccccccccCccc--cccc-h-h----hhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccch
Q 022114 196 FNYALDLGFLTKARKYT--FFKP-K-F----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHG 267 (302)
Q Consensus 196 f~l~lDLgfLtk~k~YT--fF~P-k-f----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHG 267 (302)
++.-++...+.+.-.|- ..++ + - +. +.++-|-|=.---.++.-.|.++ ...-=+=+-.+-=+.||.-||
T Consensus 210 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv-~~~~lEgi~Fys~Fa~~~~l~~~--g~m~g~~~~i~~I~RDE~lH~ 286 (410)
T PRK12759 210 YHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLA-KTVFNEGVALFASFAMLLNFQRF--GKMKGMGKVVEWSIRDESMHV 286 (410)
T ss_pred HHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc--CCCeeHHHHHHHHHHHHHHHH
Confidence 33334444454322221 0111 1 0 11 22234554443334444467665 223333344444468999999
Q ss_pred hHHHHHHhh----Cccch
Q 022114 268 DFFSALMKA----QPQFL 281 (302)
Q Consensus 268 dfFa~lmra----qP~ll 281 (302)
+++..|++. .|++.
T Consensus 287 ~~~~~l~~~l~~e~p~~~ 304 (410)
T PRK12759 287 EGNAALFRIYCQENPYIV 304 (410)
T ss_pred HHHHHHHHHHHHhChhhc
Confidence 999888753 46543
No 52
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=73.88 E-value=4 Score=36.47 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=78.8
Q ss_pred HHHHHhhhhccccc---hhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccc---------
Q 022114 140 VEFLERSCTAEFSG---FLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTK--------- 207 (302)
Q Consensus 140 idFLerScTaEFSG---flLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk--------- 207 (302)
.++|+.--+.|..- .+.|.++.++- --|.|+++|.-.|.+|+.||.=.=+.|++.+ +=+|-+.+
T Consensus 6 ~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~--~~~~~~~eNl~~aieGE 81 (166)
T COG1592 6 EENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL--LVLGDTRENLEEAIEGE 81 (166)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cccccHHHHHHHHHccc
Confidence 44555544454443 55666666654 5899999999999999999998888888855 22222222
Q ss_pred cCccccccchhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 208 ARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 208 ~k~YTfF~PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
+-.++-..|.|.=+|-... +-.+=.+|+.=+-||.+|.+-|..+|..
T Consensus 82 ~~e~~emyp~~ae~A~~~g----------------------~~~~a~~f~~~~~~Ek~H~~~~~~~Le~ 128 (166)
T COG1592 82 TYEITEMYPVFAEVAEEEG----------------------FKEAARSFRAAAKAEKRHAEMFRGLLER 128 (166)
T ss_pred hHHHHHhChHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345677788877776655 4456678888899999999999988865
No 53
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=73.84 E-value=6.9 Score=37.68 Aligned_cols=151 Identities=18% Similarity=0.174 Sum_probs=83.4
Q ss_pred HHhh---cCChHHHHHHHHHHHhhhhccc-cchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccccccc-
Q 022114 126 EAAD---KMQGPLRQIFVEFLERSCTAEF-SGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL- 200 (302)
Q Consensus 126 ~~~d---~l~~~~r~~FidFLerScTaEF-SGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~l- 200 (302)
++|. +|+++.|..+..-|---..+|- .|--+...+.+.+ ++|++.-.+...+-.|+.|+-.-..-+.-+|..-
T Consensus 83 ~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~nl~~~l~~~i--~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~ 160 (369)
T PRK07209 83 ALWKSPNGLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHI--TNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG 160 (369)
T ss_pred HHHccccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 4675 4999999887654433223332 2333445666777 6899999999999999999976555554444422
Q ss_pred -------ccccccccCccc--cc---------------cch----hhhhhhhhccccc-hhhHHHHHHHhhhCCCCcccc
Q 022114 201 -------DLGFLTKARKYT--FF---------------KPK----FIFYATYLSEKIG-YWRYITIYRHLKANPEFQCYP 251 (302)
Q Consensus 201 -------DLgfLtk~k~YT--fF---------------~Pk----fIfYAtYLSEKIG-YwRYItIyRHLe~~Pe~rf~P 251 (302)
+...|.|+-.|- ++ +.+ .|.|+. +-|.|= |.=|..|| .|.++ ...--
T Consensus 161 e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~-ilEGi~FysgFa~~~-~l~r~--g~M~G 236 (369)
T PRK07209 161 EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYC-IMEGIFFYVGFTQIL-SLGRQ--NKMTG 236 (369)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHH-Hhhhc--CCccc
Confidence 334444432220 00 000 111111 123321 33344455 56553 33444
Q ss_pred hhhhhHhhhhccccchhHHHHHH----hhCccchh
Q 022114 252 IFKYFENWCQDENRHGDFFSALM----KAQPQFLN 282 (302)
Q Consensus 252 IFk~Fe~WCqDEnRHGdfFa~lm----raqP~ll~ 282 (302)
+=+-++-=..||..|+.|+..|+ ...|+++.
T Consensus 237 ~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~ 271 (369)
T PRK07209 237 IAEQYQYILRDESMHLNFGIDLINQIKLENPHLWT 271 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 44444444689999999986544 46676644
No 54
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=73.47 E-value=1.9 Score=40.94 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhh
Q 022114 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGF 188 (302)
Q Consensus 135 ~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGF 188 (302)
.++.....+..++-- +|||...--|+||. +-|-+++++.+.+|||+.|.-|
T Consensus 164 ~~~~va~~~lEGi~F-ysgFa~~~~L~~~g--kM~g~~~~i~~I~RDE~lH~~~ 214 (335)
T PRK13965 164 LKSKVAAAMMPGFLL-YGGFYLPFYLSARG--KLPNTSDIIRLILRDKVIHNYY 214 (335)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHhhcC--CCccHHHHHHHHHHhHHHHHHH
Confidence 344444444444333 47776666688865 7899999999999999999875
No 55
>PRK13456 DNA protection protein DPS; Provisional
Probab=73.31 E-value=12 Score=34.07 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhccccccccccccc----c
Q 022114 133 GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLT----K 207 (302)
Q Consensus 133 ~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLt----k 207 (302)
+..++..|+-|.+.-..|+.-++-|.-.+.-++.- .+.|+|.+.--+=||-+||-.|-.-+.++|-..+...-. .
T Consensus 15 g~d~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls 94 (186)
T PRK13456 15 GVDVDKLVELLVKNAAAEFTTYYYYTILRAHLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDIS 94 (186)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhh
Confidence 44688899999999999999999999888888755 689998888866699999999999999999888766542 2
Q ss_pred cCccccccchh-----hhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhhCcc
Q 022114 208 ARKYTFFKPKF-----IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQ 279 (302)
Q Consensus 208 ~k~YTfF~Pkf-----IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmraqP~ 279 (302)
++.|...+... |+=..--.|++-=.+|=-|.+..+-. +-.=+ +-.+.=-+||-.|-+-|..||+..|.
T Consensus 95 ~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~k-Dp~T~---~l~~~IL~dE~eH~~dl~~lL~~~~~ 167 (186)
T PRK13456 95 ACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGK-DPRTY---DLALAILQEEIEHEAWFSELLGGGPS 167 (186)
T ss_pred cCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHH---HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57887775543 45566678888888888888887733 33333 33566789999999999999999884
No 56
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=71.81 E-value=3.4 Score=39.49 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=35.0
Q ss_pred chhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh----hCccchhhhh
Q 022114 230 GYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK----AQPQFLNDWK 285 (302)
Q Consensus 230 GYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr----aqP~ll~g~~ 285 (302)
+|-|+|.-+-.+... .=.+..+|-..|-..|||||+....-+- .+|..+...+
T Consensus 76 ~Y~~~L~~~f~~~~~---~~~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~ 132 (297)
T cd01050 76 TYHSMLNRLFGLDDE---SPTAWARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTR 132 (297)
T ss_pred HHHHHHHHHcCcccc---cccHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 355555544333321 2245889999999999999999886663 4777666543
No 57
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=67.62 E-value=4.9 Score=36.52 Aligned_cols=50 Identities=28% Similarity=0.363 Sum_probs=35.9
Q ss_pred hhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 146 SCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 146 ScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
-|.+|-+-=-+.+++.+-= .-.|.+.++++.=.+|||||.+|--..|.+.
T Consensus 178 ~lv~Ee~i~~~~~~~~~D~-~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~ 227 (304)
T PF11583_consen 178 ALVAEEIIDAYQREIARDE-TIQPLVRQVMRIHVRDEARHIAFAREELRRV 227 (304)
T ss_dssp HHHHHHSBHHHHHHHHT-S-SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555566665522 1379999999999999999999988777654
No 58
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=65.65 E-value=6.7 Score=37.95 Aligned_cols=53 Identities=25% Similarity=0.195 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhcc----ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhh
Q 022114 135 LRQIFVEFLERSCTAE----FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (302)
Q Consensus 135 ~r~~FidFLerScTaE----FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFl 189 (302)
.++.++.-|+.|..-| +|||...=-++||. +-|-++++..+.+|||+-|..|.
T Consensus 190 ~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g--~m~g~~~~i~~I~RDE~lH~~~~ 246 (376)
T PRK09101 190 LKKKLYLCLMSVNALEAIRFYVSFACSFAFAERE--LMEGNAKIIRLIARDEALHLTGT 246 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHHHHHHHHH
Confidence 3555665555555444 67777666788765 78999999999999999999776
No 59
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=64.50 E-value=16 Score=34.74 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=68.4
Q ss_pred cCCCCccccChHHHh-hhccccccccccHHHH---HHHHHHHhhccCCcccccChhHH-HHhhcCChHHHHHHHHHHHhh
Q 022114 72 LLTPRFYTTDFDEME-TLFNTEINKKLNQAEF---EALLQEFKTDYNQTHFVRNKEFK-EAADKMQGPLRQIFVEFLERS 146 (302)
Q Consensus 72 lLtPRFYTTDFd~m~-~lf~~eid~~~~r~E~---~Aml~Efr~DyNr~HFvR~~eF~-~~~d~l~~~~r~~FidFLerS 146 (302)
-+.|+..-.+-.++- +| ....+||| +.+++.|++-.-.---++.+.+. +...++....-..++|=|.=+
T Consensus 89 ~~~~~~~~P~~~eLv~~M------s~LarEEL~HFeqVl~im~~RGi~l~~~~~d~Ya~~L~k~vR~~ep~~lvDrLLv~ 162 (240)
T PF06175_consen 89 SLQPKSHYPEKEELVDKM------SRLAREELHHFEQVLEIMKKRGIPLGPDRKDRYAKGLRKHVRKGEPERLVDRLLVG 162 (240)
T ss_dssp -----------HHHHHHH------HHHHHHHHHHHHHHHHHHHHTT---------SHHHHHHTTS-SSTTHHHHHHHHHH
T ss_pred cccccccccccHHHHHHH------HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhccCCchHhHHHHHHHH
Confidence 355666655555443 33 44567775 57788887766555556666774 344444444446788887766
Q ss_pred hhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhh-hhhhhhccccc
Q 022114 147 CTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG-FLNKGLSDFNY 198 (302)
Q Consensus 147 cTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAG-FlNkal~Df~l 198 (302)
-.-|--||==|+=|+-.+ .|.|++.+.-+.+.||||-+ ||+-|-.-++-
T Consensus 163 AlIEARSCERF~lLa~~l---D~eL~~FY~~Ll~SEArHy~~yl~LA~~y~~~ 212 (240)
T PF06175_consen 163 ALIEARSCERFALLAEHL---DEELAKFYRSLLRSEARHYQDYLKLARQYFDE 212 (240)
T ss_dssp HHHHHHHHHHHHHHGGGS----HHHHHHHHHHHHHHHHHHHHHHHHHCCCS-H
T ss_pred HhHhhhhHHHHHHHHHhh---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCc
Confidence 666777777889999988 69999999999999999964 77777665553
No 60
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=64.06 E-value=4.6 Score=38.65 Aligned_cols=153 Identities=22% Similarity=0.282 Sum_probs=101.7
Q ss_pred hhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhc--cccchhhhhhhhhhhhccccccc--cc-
Q 022114 128 ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDFNYAL--DL- 202 (302)
Q Consensus 128 ~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~l--MaRDEARHAGFlNkal~Df~l~l--DL- 202 (302)
-|.||++-|+..+.+|.+---+|+-|-.-+.|--.|- |.|.|=..+ ++=||..||=.+-..+.++|.+- |+
T Consensus 14 ~d~mp~~yr~~L~r~l~~~AdsEli~a~r~~eW~~~A----P~LeediAl~niaqDelGHar~ly~~a~~LG~~r~ed~~ 89 (289)
T TIGR02156 14 KDWMPAAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSREELLD 89 (289)
T ss_pred cccCCHHHHHHHHHHHHHHhhHHHHhccccccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 3679999999999999999999999999999977767 888875554 57899999999999999998843 23
Q ss_pred ccccccCccccc--cc--hhhh--hhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccc---hh-HHHH
Q 022114 203 GFLTKARKYTFF--KP--KFIF--YATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRH---GD-FFSA 272 (302)
Q Consensus 203 gfLtk~k~YTfF--~P--kfIf--YAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRH---Gd-fFa~ 272 (302)
.++...++|.-. .| .|-. =-.||-+ ||. |..+ +.--.-.+-|+=.=...=|..|--| |. ..-.
T Consensus 90 a~~r~~~~f~nl~e~P~~dwA~tivr~~l~D--~~~--~~~~---~~L~~SSy~plA~ia~Ki~KEe~yH~rh~~~wl~r 162 (289)
T TIGR02156 90 ALLTGKAKYSSIFNYPTLTWADIGVIGWLVD--GAA--IMNQ---TPLCRCSYGPYSRAMVRICKEESFHQRQGYEIMLT 162 (289)
T ss_pred HHhcChHhhccchhCCCCCHHHHHHHHHHHH--HHH--HHHH---HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377887777531 01 0000 0112222 111 1222 3333456667767778888888744 43 3334
Q ss_pred HHhh---CccchhhhhhHHHHH
Q 022114 273 LMKA---QPQFLNDWKAKLWAR 291 (302)
Q Consensus 273 lmra---qP~ll~g~~~kLW~R 291 (302)
|... +-+.+..-.+++|-.
T Consensus 163 L~~GT~esr~r~Q~Ald~~Wp~ 184 (289)
T TIGR02156 163 LARGTQEQRQMAQDALNRWWWP 184 (289)
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 4432 344566667888865
No 61
>PTZ00183 centrin; Provisional
Probab=63.89 E-value=21 Score=27.89 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=50.0
Q ss_pred HHHHHHHHHh-hccCCcccccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc------cChhHHH
Q 022114 101 EFEALLQEFK-TDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK------TNPVVAE 173 (302)
Q Consensus 101 E~~Aml~Efr-~DyNr~HFvR~~eF~~~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~------~nP~lae 173 (302)
+.+++...|. -|.|+...+-..+|...+..+....-..-+.=+-+.+-.+-.|.|-|.|...-+.. ....+.+
T Consensus 15 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~ 94 (158)
T PTZ00183 15 QKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILK 94 (158)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3334444333 37777888888888776664321112223444445555667777777766443221 2346888
Q ss_pred Hhhccccchhhhhhhhh
Q 022114 174 IFSLMSRDEARHAGFLN 190 (302)
Q Consensus 174 ~F~lMaRDEARHAGFlN 190 (302)
+|..+..|. .|.|+
T Consensus 95 ~F~~~D~~~---~G~i~ 108 (158)
T PTZ00183 95 AFRLFDDDK---TGKIS 108 (158)
T ss_pred HHHHhCCCC---CCcCc
Confidence 999887764 55544
No 62
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=60.02 E-value=4.4 Score=39.57 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=22.7
Q ss_pred cccchhhhhHhhhhccccchhHHHHHH
Q 022114 248 QCYPIFKYFENWCQDENRHGDFFSALM 274 (302)
Q Consensus 248 rf~PIFk~Fe~WCqDEnRHGdfFa~lm 274 (302)
...|..+|.-.|--.|||||+...--|
T Consensus 96 ~~~~W~~wv~~WTAEEnRHg~~L~~YL 122 (330)
T PF03405_consen 96 SDSPWGRWVGRWTAEENRHGDALRDYL 122 (330)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHcccccccccccHHHHHHHH
Confidence 478999999999999999999987655
No 63
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=58.76 E-value=4.2 Score=32.63 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHhhhCCCCcccc
Q 022114 229 IGYWRYITIYRHLKANPEFQCYP 251 (302)
Q Consensus 229 IGYwRYItIyRHLe~~Pe~rf~P 251 (302)
|-|.||++++-.|.+|||++=.+
T Consensus 59 vl~~R~~~L~~ki~~Hpdy~~~~ 81 (115)
T PF08969_consen 59 VLYMRYLTLVEKIPKHPDYKKDK 81 (115)
T ss_dssp HHHHHHHHHHCCHCCSCCCCCTH
T ss_pred HHHHHHHHHHHHhhcCccccccc
Confidence 56899999999999999987544
No 64
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=58.38 E-value=12 Score=29.11 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=47.1
Q ss_pred HHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccccccc
Q 022114 141 EFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYAL 200 (302)
Q Consensus 141 dFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~l 200 (302)
+=|..=+..+..|.--|+....++ +||.|+.+|.-|+.+-.+|+.=|..-+.++|-..
T Consensus 4 ~~Ln~Ll~~~~d~~~~Y~~a~~~~--~~~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p 61 (111)
T PF09537_consen 4 EALNDLLKGLHDGIEGYEKAAEKA--EDPELKSLFQEFAQERQQHAEELQAEIQELGGEP 61 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 344445567788899999999999 6899999999999999999999999999998654
No 65
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=56.46 E-value=10 Score=32.77 Aligned_cols=55 Identities=25% Similarity=0.286 Sum_probs=46.8
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
++=|..-..+|-.+...|+++.+.+ ++|.+.++...+..||-.|.-=+-++|...
T Consensus 101 ~~~L~~ni~aE~~Ai~~Y~~l~~~~--~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 101 VADLRSNIAAESRARLTYERLYEMT--DDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567789999999999999988 589999999999999999998877777643
No 66
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=54.86 E-value=67 Score=30.62 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=90.9
Q ss_pred ccccccHHHHHHHH-HHHhhccCCcccccChhH---HHHhhcCChHHHHHHHHHHH-----hhhhccccchhhHHHHhhh
Q 022114 93 INKKLNQAEFEALL-QEFKTDYNQTHFVRNKEF---KEAADKMQGPLRQIFVEFLE-----RSCTAEFSGFLLYKELGRR 163 (302)
Q Consensus 93 id~~~~r~E~~Aml-~Efr~DyNr~HFvR~~eF---~~~~d~l~~~~r~~FidFLe-----rScTaEFSGflLyKEl~rr 163 (302)
||.++++.+|..-+ +.+. +..-+...=++ .++|.+|+++.|..+..-|- .|...+..+. .+...
T Consensus 14 ~n~n~~~~~~~~~~~~~~~---~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~----~~~~~ 86 (324)
T PRK13966 14 INWNRLQDEKDAEVWDRLT---GNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAV----SLIPD 86 (324)
T ss_pred ccCCCcccHHHHHHHHHHH---hCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHH----HHHHh
Confidence 47777777774332 2322 22233333344 35788999999987654332 1223333222 33334
Q ss_pred hcccChhHHHHhhccccchhhhhh---hhhhhhcc-------cccccccccccccCccc--ccc---chhhhhhhhhccc
Q 022114 164 LKKTNPVVAEIFSLMSRDEARHAG---FLNKGLSD-------FNYALDLGFLTKARKYT--FFK---PKFIFYATYLSEK 228 (302)
Q Consensus 164 lk~~nP~lae~F~lMaRDEARHAG---FlNkal~D-------f~l~lDLgfLtk~k~YT--fF~---PkfIfYAtYLSEK 228 (302)
+ .+|..+.++..++--|+.|+- .|.+.+.+ |+.-.+...|.++-.+- ++. +---..|-++-|.
T Consensus 87 ~--~~pe~~~~~~~q~~~E~IHsesYs~il~tl~~~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~~~~~~va~~~lEg 164 (324)
T PRK13966 87 A--LTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDDAFRWSEENRNLQRKAEIVLQYYRGDEPLKRKVASTLLES 164 (324)
T ss_pred c--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhcCHHHHHHHHHHHHHhcCChHHHHHHHHHHHhH
Confidence 4 469999999999999999985 45555532 22112333444433321 111 0000234555677
Q ss_pred c-chhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114 229 I-GYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 229 I-GYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr 275 (302)
| =|-=+..+| .|.++ ...-=+=+=++-=+.||.-||+++..+.+
T Consensus 165 i~FysgF~~~~-~l~~~--~km~g~~~~i~~I~RDE~lH~~f~~~l~~ 209 (324)
T PRK13966 165 FLFYSGFYLPM-YWSSR--AKLTNTADMIRLIIRDEAVHGYYIGYKFQ 209 (324)
T ss_pred HHHHHHHHHHH-HHhhc--CCCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7 344444444 44332 12222333344456799999999988886
No 67
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=53.00 E-value=12 Score=34.78 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=97.1
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhc--cccchhhhhhhhhhhhccc-ccc---c
Q 022114 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSL--MSRDEARHAGFLNKGLSDF-NYA---L 200 (302)
Q Consensus 127 ~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~l--MaRDEARHAGFlNkal~Df-~l~---l 200 (302)
+.+.||++.|+..+++|.+---+|+.|---+-|.--+- |.|.+-..+ |+=||-+||-.+...+.++ |-+ =
T Consensus 6 ~~~~~~~~~~~~L~~~l~~laD~elil~~r~~ew~~~A----P~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d 81 (263)
T PF05138_consen 6 DPDEMPEEYREALIRYLLRLADDELILGQRLSEWCGHA----PSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDED 81 (263)
T ss_dssp TTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHH
T ss_pred cchhhhhhhHHHHHHHHHHHhChHHHhhhHHhHHHhhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh
Confidence 45789999999999999999999998888888876655 888886654 6779999999999999999 433 3
Q ss_pred ccccccccCcccccc----ch--hh--hhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHH
Q 022114 201 DLGFLTKARKYTFFK----PK--FI--FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSA 272 (302)
Q Consensus 201 DLgfLtk~k~YTfF~----Pk--fI--fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~ 272 (302)
+|.++...++|.... |. |. .=..||-+.-|+-+ |+.--+-.+-|+=.-...=|.+|.-|=..-..
T Consensus 82 ~la~~R~~~~~rn~~l~e~p~~dwa~~v~r~~l~d~~~~~~-------l~~l~~ssy~pla~~a~k~~kEe~yH~~h~~~ 154 (263)
T PF05138_consen 82 DLAFLRDAREFRNLLLFEQPNGDWADTVARQFLFDRAGKVL-------LEALADSSYEPLAAIAAKILKEEAYHLRHGED 154 (263)
T ss_dssp HHHHHHHTTCS-SSGGGGS---SHHHHHHHHHHHHHHHHHH-------HHHHTT-SBHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhhhhhhhccCCCCHHHHHHHHHHHHHHHHHH-------HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666664321 11 11 11223333333332 33334556666666666677777665544444
Q ss_pred HHhh----Cc---cchhhhhhHHHHHH
Q 022114 273 LMKA----QP---QFLNDWKAKLWARF 292 (302)
Q Consensus 273 lmra----qP---~ll~g~~~kLW~RF 292 (302)
.|+. .+ +.+..-.+++|...
T Consensus 155 w~~rL~~gt~es~~r~q~Al~~~wp~~ 181 (263)
T PF05138_consen 155 WLRRLGDGTEESRERMQAALDRLWPYT 181 (263)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3332 22 23444457777653
No 68
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=50.77 E-value=35 Score=30.19 Aligned_cols=55 Identities=27% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhh
Q 022114 137 QIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGL 193 (302)
Q Consensus 137 ~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal 193 (302)
.-.++=|..+.-+|.-..-.|.++...+ .|+.++.+|...+.||-.|+-++..-+
T Consensus 112 ~~~~~~I~~a~~~E~~t~~~Y~~~~~~~--~~~~~~~~~~~~a~~E~~H~~~l~~~~ 166 (176)
T COG1633 112 VSYLEAIEAAMEAEKDTIEFYEELLDEL--VNEEAKKLFKTIADDEKGHASGLLSLY 166 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888999999999999999 899999999999999999998876543
No 69
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=50.41 E-value=26 Score=30.27 Aligned_cols=116 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred hhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccchhh-----
Q 022114 145 RSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFI----- 219 (302)
Q Consensus 145 rScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~PkfI----- 219 (302)
-+|.+|.|-.+-|-==+-.++ .+|.+++++.-.|.+|-+|++.|-..+..+|- +..-..+.+.+|
T Consensus 30 gG~~gEl~ai~qYl~q~~~~~-~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~---------~~~g~pw~~~yv~~~~d 99 (156)
T cd01051 30 GGAFGELSAAMQYLFQSFNFR-EDPKYRDLLLDIGTEELSHLEMVATLIAMLLK---------DSQGVPWTAAYIQSSGN 99 (156)
T ss_pred CCccHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCCCCcCCCcccCCCCC
Confidence 345566666665543333342 68999999999999999999999998887764 111122234444
Q ss_pred ----hhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHhh
Q 022114 220 ----FYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKA 276 (302)
Q Consensus 220 ----fYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmra 276 (302)
+.+..=+|+-+-..|--+++-.+ +--..-++++ =-+||-.|=+.|..++..
T Consensus 100 ~~~~L~~ni~aE~~Ai~~Y~~l~~~~~---Dp~v~~~l~~---I~~rE~~H~~~f~~~l~~ 154 (156)
T cd01051 100 LVADLRSNIAAESRARLTYERLYEMTD---DPGVKDTLSF---LLVREIVHQNAFGKALES 154 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 44555667777677766666554 3333344444 458999999999887763
No 70
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=48.25 E-value=25 Score=31.38 Aligned_cols=105 Identities=27% Similarity=0.340 Sum_probs=60.8
Q ss_pred hcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHH----HHhhccccchhhhhhhhhhhhcccccccccc
Q 022114 129 DKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVA----EIFSLMSRDEARHAGFLNKGLSDFNYALDLG 203 (302)
Q Consensus 129 d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~la----e~F~lMaRDEARHAGFlNkal~Df~l~lDLg 203 (302)
.+-+.+-++..|..+....-.+-++.-++..|.+|+... |+.++ =+++-|-||- |-.|....++--+-..+++
T Consensus 13 ~~~~~ppk~Khv~~il~~t~~~~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G--~~~~~~~~~~~~~~~~~~~ 90 (280)
T PF07651_consen 13 SHDEAPPKEKHVREILSATSSPESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDG--HPSFLQELLRYNRRLFDLS 90 (280)
T ss_dssp -SSS---HHHHHHHHHHHCSTTS-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS---CHHHHHHHHTT-----TT
T ss_pred CCCCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcC--chHHHHHHHHcccchhhhc
Confidence 333444556677888777544578888999999999987 87765 2455667774 4567766666555566777
Q ss_pred ccccc---Cccccccchhhh-hhhhhccccchhhHH
Q 022114 204 FLTKA---RKYTFFKPKFIF-YATYLSEKIGYWRYI 235 (302)
Q Consensus 204 fLtk~---k~YTfF~PkfIf-YAtYLSEKIGYwRYI 235 (302)
.+.+. +.=+.=--.||= |+.||-||+...|=.
T Consensus 91 ~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~ 126 (280)
T PF07651_consen 91 NIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKL 126 (280)
T ss_dssp ---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccccchhHHHHHHHHHHHHHHHHHHHc
Confidence 77661 111122246776 999999998765533
No 71
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=45.86 E-value=19 Score=29.88 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=40.4
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhh
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARH 185 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARH 185 (302)
-+|=|.-.|..|=...-.|.++..+. +||+++.+|.-++..|-+|
T Consensus 83 ~~~al~~g~~~E~~~i~~ye~~~~~~--~d~d~k~v~~~L~~~e~~H 127 (135)
T cd01048 83 LQDALEVGVLIEELDIADYDRLLERT--QNPDIRDVFENLQAASRNH 127 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 56677778889999999999999998 7899999999999999888
No 72
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=45.65 E-value=33 Score=35.34 Aligned_cols=142 Identities=20% Similarity=0.262 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhccCCcccccChhHHHHhhcCChH-HHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhcc
Q 022114 100 AEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGP-LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLM 178 (302)
Q Consensus 100 ~E~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~~~-~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lM 178 (302)
-+|.-+.+||-.|.| -++--.+..+.+..++-+ .-....-=|.+-|.++-+|-|=|.|-+|-+.++--.|.++|+-+
T Consensus 14 ~r~~~lf~~lD~~~~--g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 14 IRIRCLFKELDSKND--GQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHhccCCC--CceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 467778888866554 344444554333444333 34445566778999999999999999999988888999999998
Q ss_pred ccchhhhhhh--hhhhhcccccccccccccccCccccccchhhhhhhhhccccchhhHHHH-----HHHhhhCCCCcccc
Q 022114 179 SRDEARHAGF--LNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITI-----YRHLKANPEFQCYP 251 (302)
Q Consensus 179 aRDEARHAGF--lNkal~Df~l~lDLgfLtk~k~YTfF~PkfIfYAtYLSEKIGYwRYItI-----yRHLe~~Pe~rf~P 251 (302)
-++---|-+- |+.+|+|.|+.+|..-+.| ||. + .+|=|+| +| --|+--||+--++-
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k-----~~e--~-------~d~~g~~---~I~~~e~rd~~ll~p~s~i~d 154 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLSDEKAAK-----FFE--H-------MDKDGKA---TIDLEEWRDHLLLYPESDLED 154 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccCHHHHHH-----HHH--H-------hccCCCe---eeccHHHHhhhhcCChhHHHH
Confidence 8863333322 4899999999998877766 321 1 1233332 12 14777888888888
Q ss_pred hhhhhHhhh
Q 022114 252 IFKYFENWC 260 (302)
Q Consensus 252 IFk~Fe~WC 260 (302)
|..+.+.-|
T Consensus 155 i~~~W~h~~ 163 (463)
T KOG0036|consen 155 IYDFWRHVL 163 (463)
T ss_pred HHHhhhhhe
Confidence 888888777
No 73
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=45.45 E-value=20 Score=34.93 Aligned_cols=155 Identities=20% Similarity=0.261 Sum_probs=101.7
Q ss_pred HhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhh--ccccchhhhhhhhhhhhccccccc--cc
Q 022114 127 AADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFS--LMSRDEARHAGFLNKGLSDFNYAL--DL 202 (302)
Q Consensus 127 ~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~--lMaRDEARHAGFlNkal~Df~l~l--DL 202 (302)
.-|.||++-|+..+.+|.+---+|+-|-.-..|--.|- |.|.+=.. -++=||..||=.+-..+.++|.+- |+
T Consensus 31 ~~d~mp~~yr~~L~~~l~~laDseLi~a~r~~eWi~~A----P~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~e~~ 106 (314)
T PRK13778 31 PKDWMPDAYRKTLIRQISQHAHSEIVGMLPEGNWITRA----PSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSREELI 106 (314)
T ss_pred CccccCHHHHHHHHHHHHHHhhHHHHhcchhccHHHhC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 34679999999999999999999999988888876666 88877554 457899999999999999998854 23
Q ss_pred -ccccccCccccc--cch--h--hhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhH----HH
Q 022114 203 -GFLTKARKYTFF--KPK--F--IFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDF----FS 271 (302)
Q Consensus 203 -gfLtk~k~YTfF--~Pk--f--IfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdf----Fa 271 (302)
.++...++|.-. .|. | +.--.||-+ ||. |..+.-|+ .-.+-|+=.=...=|..|--|-.. .-
T Consensus 107 ~a~~r~~~~f~n~fe~P~~dwAdtvvr~~L~D--~a~--~~~~~~L~---~sSy~plA~~a~Ki~KEe~yH~rhg~~wl~ 179 (314)
T PRK13778 107 DDLLSGKAKYSSIFNYPTLTWADVGVIGWLVD--GAA--IMNQVPLC---RCSYGPYARAMVRICKEESFHQRQGEEILL 179 (314)
T ss_pred HHHhcchHHhcccccCCCCCHHHHHHHHHHHH--HHH--HHHHHHHh---cCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777776532 111 1 112223333 222 11222333 456667777788888888655433 33
Q ss_pred HHHhhCc---cchhhhhhHHHHHH
Q 022114 272 ALMKAQP---QFLNDWKAKLWARF 292 (302)
Q Consensus 272 ~lmraqP---~ll~g~~~kLW~RF 292 (302)
.|+..-| +.+..-.+++|-..
T Consensus 180 rL~~GT~esr~r~Q~Ald~~Wp~~ 203 (314)
T PRK13778 180 ALARGTPAQKQMAQDALNRWWWPA 203 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 3443222 34555678888653
No 74
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=45.32 E-value=13 Score=27.02 Aligned_cols=20 Identities=40% Similarity=0.815 Sum_probs=16.2
Q ss_pred hHHhhccCCCCccccChHHHh
Q 022114 66 TAIKETLLTPRFYTTDFDEME 86 (302)
Q Consensus 66 ~a~~etlLtPRFYTTDFd~m~ 86 (302)
=.++-..+||+ |||+.+++-
T Consensus 31 W~mr~~~~Sp~-yTT~w~el~ 50 (52)
T PF13438_consen 31 WKMRREMLSPR-YTTRWDELP 50 (52)
T ss_pred hHHHHHhcCCC-CcCCHHHcc
Confidence 45677789998 799999874
No 75
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=45.08 E-value=23 Score=30.11 Aligned_cols=47 Identities=30% Similarity=0.455 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhh
Q 022114 132 QGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN 190 (302)
Q Consensus 132 ~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlN 190 (302)
++++|+.|..-|.+|+..... .+.+|...++-.-|+.||||=--+|.
T Consensus 32 ~e~Lremfa~LLass~d~~~~------------~~~hp~fv~Ii~qLsp~EA~iL~~l~ 78 (186)
T PF14337_consen 32 DEELREMFANLLASSMDKRKN------------DDVHPSFVEIIKQLSPDEARILKYLY 78 (186)
T ss_pred cHHHHHHHHHHHHHHhCcCcc------------ccccHHHHHHHHhCCHHHHHHHHHHH
Confidence 688999999999999987543 33578888888888999988666665
No 76
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=43.24 E-value=39 Score=36.93 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=48.2
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcccChh-HHHHhhccccchhhhhhhhhhhhccc
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKKTNPV-VAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~~nP~-lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
.+-|+-.+-.|-.+..+|+|++.+. .+|+ .+++|.-||..|..|.-.|-+-|...
T Consensus 943 ~~al~lAm~~Ekdai~fY~~la~~~--~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 943 GNLFRIAIEFERRAVKFFKERVAET--PDGSVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999998 6775 69999999999999998888777654
No 77
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=42.80 E-value=14 Score=35.01 Aligned_cols=37 Identities=32% Similarity=0.475 Sum_probs=29.1
Q ss_pred ccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhh
Q 022114 151 FSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFL 189 (302)
Q Consensus 151 FSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFl 189 (302)
+|||...--+.||- +=|-+++++.+.+|||+-|.-|.
T Consensus 168 ysgF~~~~~l~~~~--km~g~~~~i~~I~RDE~lH~~f~ 204 (324)
T PRK13966 168 YSGFYLPMYWSSRA--KLTNTADMIRLIIRDEAVHGYYI 204 (324)
T ss_pred HHHHHHHHHHhhcC--CCCcHHHHHHHHHHhHHHHHHHH
Confidence 56766655666643 56899999999999999998773
No 78
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=42.65 E-value=82 Score=26.40 Aligned_cols=135 Identities=13% Similarity=0.087 Sum_probs=107.5
Q ss_pred HHHHHHhhhhccccchhhHHHHhhhhccc---ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCcccccc
Q 022114 139 FVEFLERSCTAEFSGFLLYKELGRRLKKT---NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFK 215 (302)
Q Consensus 139 FidFLerScTaEFSGflLyKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~ 215 (302)
.++-|-+=.+.|+.....|--++.-..+. -|-++..|.-.|-+|-.||-=|=+-+.+.|-.++++-+.+-++..+=.
T Consensus 4 i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~~~~ 83 (161)
T cd01056 4 CEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDEWGS 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcccCC
Confidence 45566666788999999999888877655 699999999999999999998888899999999999988886455667
Q ss_pred chhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHHHHHHh
Q 022114 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMK 275 (302)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfFa~lmr 275 (302)
+.=++=..+=-||.-=-+|-.+++.=+++-|+...-.+.| .+-.++-.|-+-++-++.
T Consensus 84 ~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~--~fl~eQ~e~~~~~~~~l~ 141 (161)
T cd01056 84 GLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLES--EFLEEQVESIKKLAGYIT 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 8888888888899888899999999999877766555443 045566666666665544
No 79
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=42.37 E-value=20 Score=32.18 Aligned_cols=62 Identities=21% Similarity=0.275 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHhhhhccccchh-hHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 132 QGPLRQIFVEFLERSCTAEFSGFL-LYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 132 ~~~~r~~FidFLerScTaEFSGfl-LyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
.+.+++...+-++..| -|...-= -|.|..+-. -+..++.-|..++|||.+|++-+.++|.-.
T Consensus 67 ~~~~~eNl~~aieGE~-~e~~emyp~~ae~A~~~--g~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~ 129 (166)
T COG1592 67 LGDTRENLEEAIEGET-YEITEMYPVFAEVAEEE--GFKEAARSFRAAAKAEKRHAEMFRGLLERL 129 (166)
T ss_pred cccHHHHHHHHHccch-HHHHHhChHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555544444432 2222211 233333322 257888899999999999999999988654
No 80
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=41.92 E-value=26 Score=28.77 Aligned_cols=48 Identities=27% Similarity=0.425 Sum_probs=39.9
Q ss_pred cchhhHHhhccCCCCc----cccChH-HHhhhccccccccccHHHHHHHHHHH
Q 022114 62 KSNKTAIKETLLTPRF----YTTDFD-EMETLFNTEINKKLNQAEFEALLQEF 109 (302)
Q Consensus 62 ~~~k~a~~etlLtPRF----YTTDFd-~m~~lf~~eid~~~~r~E~~Aml~Ef 109 (302)
++.++...-+|.|+|| |.+||- +++.+++...+.+-.+.|++.++.|=
T Consensus 25 EAl~qwi~k~L~TeR~~~~iYs~~yG~ele~lig~~~~~~~~~sEi~r~I~Ea 77 (112)
T PF10934_consen 25 EALKQWIYKALNTERYRYLIYSWDYGSELEDLIGKNYPREYVESEIEREIEEA 77 (112)
T ss_pred HHHHHHHHHHhCCcccceeccccccchhHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 5678889999999996 888884 67788777777888899999999883
No 81
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=38.56 E-value=45 Score=27.11 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=46.4
Q ss_pred hhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc-cChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 128 ADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 128 ~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
...+|+.++..|..=+ ..|-..-=.|+++.+.-.+ .....+..|..++.+|.+|+-.+-++|..+
T Consensus 57 l~~i~~~~~~~le~a~----~~E~~~~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~~ 122 (123)
T cd01046 57 LGKVSEDTKENLEMML----EGEAGANEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLERY 122 (123)
T ss_pred HhcCcccHHHHHHHHH----HhHHHHHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555665555444 4444444457877776543 489999999999999999999999888754
No 82
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=37.61 E-value=21 Score=36.01 Aligned_cols=26 Identities=31% Similarity=0.703 Sum_probs=21.8
Q ss_pred CcccchhhhhHhhhhccccchhHHHH
Q 022114 247 FQCYPIFKYFENWCQDENRHGDFFSA 272 (302)
Q Consensus 247 ~rf~PIFk~Fe~WCqDEnRHGdfFa~ 272 (302)
..-.|.=+|-..|--.||||||...-
T Consensus 152 ~~~~~W~~Wvr~WTAEENRHgdlL~~ 177 (390)
T PLN00179 152 ASATPWARWTRAWTAEENRHGDLLNK 177 (390)
T ss_pred CCCCchhhhccccccccchHHHHHHH
Confidence 34567789999999999999998763
No 83
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=36.77 E-value=37 Score=30.14 Aligned_cols=117 Identities=21% Similarity=0.241 Sum_probs=71.0
Q ss_pred hccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccc------------cccccccccCcccccc
Q 022114 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYA------------LDLGFLTKARKYTFFK 215 (302)
Q Consensus 148 TaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~------------lDLgfLtk~k~YTfF~ 215 (302)
..|+.-.-+|+--..-++. +|.+.+.+..|...|..|..+.|+-|...|+- .=||.+|. ..-
T Consensus 12 AGE~~A~~iY~gQ~~~~~~-~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~ta-----l~G 85 (172)
T PF03232_consen 12 AGEVGAVRIYRGQLAVARR-DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTA-----LLG 85 (172)
T ss_pred HHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHH-----hhc
Confidence 4566666677765555532 89999999999999999999999999988741 22333332 223
Q ss_pred chhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhccccchhHH
Q 022114 216 PKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFF 270 (302)
Q Consensus 216 PkfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqDEnRHGdfF 270 (302)
+++.+..|.=-|..==-=|=---|.|..+.+..-..+-.-++.-+.||-.|.|.=
T Consensus 86 ~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~~~r~DE~~H~d~A 140 (172)
T PF03232_consen 86 DKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIEQFRDDELEHRDTA 140 (172)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333211222222333443211223335566788899999999864
No 84
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=36.34 E-value=44 Score=27.06 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=42.4
Q ss_pred HHHHhhhhcccc-chhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhccc
Q 022114 141 EFLERSCTAEFS-GFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDF 196 (302)
Q Consensus 141 dFLerScTaEFS-GflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df 196 (302)
+=|+.+-..|.. ..-.|+++.+.-.+. ....+.+|.-++.||.+|+-.+=+.|.+.
T Consensus 76 ~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 76 ENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445555566663 456788877766544 88999999999999999999988887653
No 85
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=35.54 E-value=28 Score=35.18 Aligned_cols=62 Identities=19% Similarity=0.269 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHhhh----h--ccccch--hhHHHHhhhhccc----------ChhHHHHhhccccchhhhhhhhhhh
Q 022114 131 MQGPLRQIFVEFLERSC----T--AEFSGF--LLYKELGRRLKKT----------NPVVAEIFSLMSRDEARHAGFLNKG 192 (302)
Q Consensus 131 l~~~~r~~FidFLerSc----T--aEFSGf--lLyKEl~rrlk~~----------nP~lae~F~lMaRDEARHAGFlNka 192 (302)
.|+..=+.-+.+|..|= + .-+-|| ..|+|+.-++-.. +|.++.+-.-.|.||.||.-|--+-
T Consensus 185 VDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~i 264 (390)
T PLN00179 185 VDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRI 264 (390)
T ss_pred cCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHH
Confidence 35555455666666432 1 123343 3577887666444 5999999999999999998775443
No 86
>PRK10304 ferritin; Provisional
Probab=34.31 E-value=1.2e+02 Score=26.29 Aligned_cols=129 Identities=14% Similarity=0.171 Sum_probs=102.8
Q ss_pred HHHHHHHhhhhccccchhhHHHHhhhhccc-ChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccc
Q 022114 138 IFVEFLERSCTAEFSGFLLYKELGRRLKKT-NPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKP 216 (302)
Q Consensus 138 ~FidFLerScTaEFSGflLyKEl~rrlk~~-nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~P 216 (302)
..++.|-.=.+.|+...-+|--++.=..+. =|-+++-|.--|.+|-.||.=|=+-|.+.|..++++-+.+.. =+|=.|
T Consensus 5 ~i~~~Ln~qin~El~As~~Yl~ma~~~~~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~-~~~~s~ 83 (165)
T PRK10304 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPF-AEYSSL 83 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCc-cccCCH
Confidence 466777778889999999998888877544 688999999999999999998888899999999999887443 266678
Q ss_pred hhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhhhHhhhhc---cccchhHH
Q 022114 217 KFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQD---ENRHGDFF 270 (302)
Q Consensus 217 kfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~Fe~WCqD---EnRHGdfF 270 (302)
.=+|=..+=-||---..|=-++..=++.-|+.-.-.+.|| +++ |-+|=+..
T Consensus 84 ~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~f---l~EQveEe~~~~~l 137 (165)
T PRK10304 84 DELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQWY---VSEQHEEEKLFKSI 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHH---HHHHHHHHHHHHHH
Confidence 8888888889999999999999999998777666555544 455 55554443
No 87
>PTZ00184 calmodulin; Provisional
Probab=32.77 E-value=1.2e+02 Score=23.22 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=36.6
Q ss_pred ccCCcccccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc------cChhHHHHhhcccc
Q 022114 112 DYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK------TNPVVAEIFSLMSR 180 (302)
Q Consensus 112 DyNr~HFvR~~eF~~~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~------~nP~lae~F~lMaR 180 (302)
|.|+.-.+-..+|...+..+.......-+.-+.+.+-..-+|.|-|+|..+-+.. .-..+..+|...-.
T Consensus 21 D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~ 95 (149)
T PTZ00184 21 DKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDR 95 (149)
T ss_pred cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCC
Confidence 6666666777777655543322222334444444455555677777776654321 11345666666543
No 88
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=32.75 E-value=54 Score=22.62 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHhhc-cCC------cccccChhHHHHhhcCChHHHHHHHHHHH
Q 022114 98 NQAEFEALLQEFKTD-YNQ------THFVRNKEFKEAADKMQGPLRQIFVEFLE 144 (302)
Q Consensus 98 ~r~E~~Aml~Efr~D-yNr------~HFvR~~eF~~~~d~l~~~~r~~FidFLe 144 (302)
.+++|..||.|...+ ++. ..+..++.|....+ +.+-++.|-+|+.
T Consensus 3 ~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~--~~~r~~lF~~~i~ 54 (55)
T smart00441 3 AKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLS--ESEREQLFEDHIE 54 (55)
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcC--hHHHHHHHHHHHh
Confidence 357888888887766 553 35677788874333 4556688888875
No 89
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=30.98 E-value=80 Score=21.50 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=24.1
Q ss_pred hHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhhc
Q 022114 123 EFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLK 165 (302)
Q Consensus 123 eF~~~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrlk 165 (302)
.+.+..+.|||+.|+.|......- .-|+||++.+.
T Consensus 3 ~l~~~l~~L~~~~r~i~~l~~~~g--------~s~~eIa~~l~ 37 (54)
T PF08281_consen 3 ALQQALAQLPERQREIFLLRYFQG--------MSYAEIAEILG 37 (54)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHTS-----------HHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHC--------cCHHHHHHHHC
Confidence 467788999999999999754322 34788888763
No 90
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=30.33 E-value=54 Score=26.06 Aligned_cols=30 Identities=33% Similarity=0.657 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 022114 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (302)
Q Consensus 135 ~r~~FidFLerScTaEFSGflLyKEl~rrl 164 (302)
.++.|++||..+|..||.-.+-=..|..+|
T Consensus 7 ~~~Q~~~~l~~~~~~Ef~~I~~Er~v~~kL 36 (109)
T PF03980_consen 7 VHQQMIEFLEENCKKEFEEILEERDVVEKL 36 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 467799999999999999877655666665
No 91
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=30.05 E-value=25 Score=31.98 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=16.9
Q ss_pred CCcccchhhhhHhhhhccccch
Q 022114 246 EFQCYPIFKYFENWCQDENRHG 267 (302)
Q Consensus 246 e~rf~PIFk~Fe~WCqDEnRHG 267 (302)
-....|-+.|++.||.||..-|
T Consensus 210 i~~Lp~~w~~~~~~~~~~~~~~ 231 (248)
T cd06432 210 IFSLPQEWLWCETWCSDESKKK 231 (248)
T ss_pred eEECChHHHHHHHHhcccccCc
Confidence 3345667899999999998644
No 92
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=29.41 E-value=80 Score=26.97 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccc
Q 022114 135 LRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (302)
Q Consensus 135 ~r~~FidFLerScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lD 201 (302)
+++.|++-|..=-.+|-.+-=.+..+.++. .||.|+..|.--...-.+|..=|-+.+...|...+
T Consensus 2 l~~~~~~~L~d~y~aE~q~~~~l~~~~~~a--~~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~ 66 (159)
T PF05974_consen 2 LRDLFIDELRDLYSAEKQLLKALPKLAEAA--SSPELKAALEEHLEETEQQIERLEQIFEALGADPS 66 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 578899999999999999999999999999 67999999998777777888888888888876543
No 93
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=28.88 E-value=63 Score=25.43 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHhhccCCccccc-ChhHHHHhhcCChHHHHHHHHHHHhh
Q 022114 97 LNQAEFEALLQEFKTDYNQTHFVR-NKEFKEAADKMQGPLRQIFVEFLERS 146 (302)
Q Consensus 97 ~~r~E~~Aml~Efr~DyNr~HFvR-~~eF~~~~d~l~~~~r~~FidFLerS 146 (302)
...+|++.++.+=-.-..-+---- .==|...|.++++..|+.+++.|++.
T Consensus 14 ~s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 64 (65)
T PF14098_consen 14 SSKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNSDESEKQEMVNTLEQG 64 (65)
T ss_pred CCHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 456788877776443221111100 01379999999999999999999763
No 94
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=28.31 E-value=56 Score=26.28 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=47.1
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcc-cChhHHHHhhccccchhhhhhhhhhhhccccc
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKK-TNPVVAEIFSLMSRDEARHAGFLNKGLSDFNY 198 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~-~nP~lae~F~lMaRDEARHAGFlNkal~Df~l 198 (302)
.+-|+.....|-.-.-.|+++.+...+ ..+..+.+|.-...||-+|.-++++.|...-.
T Consensus 83 ~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~~ 142 (153)
T cd00907 83 PEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLIDK 142 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777788888765533 58999999999999999999999998876543
No 95
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=26.82 E-value=78 Score=26.59 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=45.4
Q ss_pred hccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhhhhhhhhcccccccc
Q 022114 148 TAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALD 201 (302)
Q Consensus 148 TaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lD 201 (302)
.....|---|++...++ .||.|+.+|.-|+.+=++|+.=|+..+...|-.-+
T Consensus 10 e~~~D~~~gY~~aae~v--~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~ 61 (139)
T TIGR02284 10 EISIDGKDGFEESAEEV--KDPELATLFRRIAGEKSAIVSELQQVVASLGGKPE 61 (139)
T ss_pred HHcccHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 34566778899999999 89999999999999999999999999999986554
No 96
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=25.84 E-value=52 Score=25.17 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHhhcc-CCcccccChhHHHHhhcCChHHHHHHHHHHHhhhhccccchhhHHHHhhhh
Q 022114 97 LNQAEFEALLQEFKTDY-NQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRL 164 (302)
Q Consensus 97 ~~r~E~~Aml~Efr~Dy-Nr~HFvR~~eF~~~~d~l~~~~r~~FidFLerScTaEFSGflLyKEl~rrl 164 (302)
.|..=++.++.||.-+. |-.+|.=| -+.+=.|+. -||+.| ++. .|=+||+.+.+||
T Consensus 9 ~V~~WL~w~~~ef~L~~~~~~~F~m~---Gk~LC~ls~------edF~~r--~P~-~GdiL~~~lq~~l 65 (66)
T cd08536 9 HVRTWLRWVSARYQLEVVDLDKFLMN---GKGLCLMSL------EGFLYR--VPV-GGKLLYEDFQRRL 65 (66)
T ss_pred HHHHHHHHHHHHhCCCCCCccccCCC---HHHHHcCCH------HHHHhh--cCC-ccHHHHHHHHHHh
Confidence 34445667788887777 66666332 234445553 366666 344 9999999999998
No 97
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=25.63 E-value=36 Score=34.65 Aligned_cols=27 Identities=30% Similarity=0.695 Sum_probs=23.6
Q ss_pred hhhhccc------cchhhHHHHHHH-hhhCCCCc
Q 022114 222 ATYLSEK------IGYWRYITIYRH-LKANPEFQ 248 (302)
Q Consensus 222 AtYLSEK------IGYwRYItIyRH-Le~~Pe~r 248 (302)
.+||+|+ |=|-||||.|=- +.+|||++
T Consensus 43 ~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~ 76 (424)
T KOG2880|consen 43 NVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYR 76 (424)
T ss_pred HHHHhcCCcchhhhHHHHHHHHHHHhcccCcchh
Confidence 4788887 779999999977 99999998
No 98
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=23.68 E-value=2.3e+02 Score=23.88 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=94.8
Q ss_pred HHHHHhhhhccccchhhHHHHhhhhcc---cChhHHHHhhccccchhhhhhhhhhhhcccccccccccccccCccccccc
Q 022114 140 VEFLERSCTAEFSGFLLYKELGRRLKK---TNPVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKP 216 (302)
Q Consensus 140 idFLerScTaEFSGflLyKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkal~Df~l~lDLgfLtk~k~YTfF~P 216 (302)
++-|-.=.+.|+..--.|--++.-... .-|-++..|.-.|-+|--||-=|=+-|.+-|-.+.++-+.+-+...|-.|
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~~~~~ 84 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDEWGGT 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccccCCH
Confidence 444555567788888888888877632 36999999999999999999988888999999999998887665556677
Q ss_pred hhhhhhhhhccccchhhHHHHHHHhhhCCCCcccchhhh-h
Q 022114 217 KFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKY-F 256 (302)
Q Consensus 217 kfIfYAtYLSEKIGYwRYItIyRHLe~~Pe~rf~PIFk~-F 256 (302)
.=++=..+=.||.---.+-.|++.=+++-|+.-.-.++| |
T Consensus 85 ~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~~~f 125 (160)
T cd00904 85 LDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLESHF 125 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhhchh
Confidence 778888888899988888899998888888777777776 5
No 99
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=23.36 E-value=1.1e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=41.0
Q ss_pred HHhhcCChHHHHHHHHHHH-----hhhhccccchhhHHHHhhhhcccChhHHHHhhccccchhhhhh---hhhhhh
Q 022114 126 EAADKMQGPLRQIFVEFLE-----RSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAG---FLNKGL 193 (302)
Q Consensus 126 ~~~d~l~~~~r~~FidFLe-----rScTaEFSGflLyKEl~rrlk~~nP~lae~F~lMaRDEARHAG---FlNkal 193 (302)
.+|..|+++.|..|..-|- .|..++- +.-.+.+.+ ++|.+.-.+..++--|+-|+- .|.+.+
T Consensus 61 ~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~----~~~~~~~~i--~~pE~~~~~~~q~~~E~IHs~sYs~il~tl 130 (376)
T PRK09101 61 IDYQALPEHEKHIFISNLKYQTLLDSIQGRS----PNVALLPLV--SIPELETWIETWSFSETIHSRSYTHIIRNI 130 (376)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999887754432 1323332 223455666 679999999999999999984 444544
No 100
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=22.62 E-value=51 Score=23.28 Aligned_cols=10 Identities=30% Similarity=0.670 Sum_probs=7.5
Q ss_pred hhhhhHhhhh
Q 022114 252 IFKYFENWCQ 261 (302)
Q Consensus 252 IFk~Fe~WCq 261 (302)
|++||..|..
T Consensus 15 I~dyfr~~K~ 24 (35)
T PF08763_consen 15 IQDYFRQFKK 24 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6788888774
No 101
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=22.34 E-value=47 Score=24.60 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=13.5
Q ss_pred cchhhHH-HHhhhhcccChhH
Q 022114 152 SGFLLYK-ELGRRLKKTNPVV 171 (302)
Q Consensus 152 SGflLyK-El~rrlk~~nP~l 171 (302)
|+|+||- +..+.++..||.+
T Consensus 7 naf~lf~~~~r~~~~~~~p~~ 27 (77)
T cd01389 7 NAFILYRQDKHAQLKTENPGL 27 (77)
T ss_pred cHHHHHHHHHHHHHHHHCCCC
Confidence 5677774 6667777777754
No 102
>PF11254 DUF3053: Protein of unknown function (DUF3053); InterPro: IPR021413 Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.
Probab=21.60 E-value=65 Score=30.50 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.3
Q ss_pred CChHHHHHHHHHHHhhhhcc
Q 022114 131 MQGPLRQIFVEFLERSCTAE 150 (302)
Q Consensus 131 l~~~~r~~FidFLerScTaE 150 (302)
=+||.|+.|||||.......
T Consensus 22 KEpeQR~AFi~fLQ~~i~~~ 41 (229)
T PF11254_consen 22 KEPEQRKAFIDFLQNRIMRS 41 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 37999999999999866543
No 103
>PLN02964 phosphatidylserine decarboxylase
Probab=21.13 E-value=1.7e+02 Score=31.27 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=42.4
Q ss_pred cccHHH---HHHHHHHHhhccCCcccccChhHHHHhhcCC-----hHHHHHHHHHHHhhhhccccchhhHHHHhhhhcc
Q 022114 96 KLNQAE---FEALLQEFKTDYNQTHFVRNKEFKEAADKMQ-----GPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKK 166 (302)
Q Consensus 96 ~~~r~E---~~Aml~Efr~DyNr~HFvR~~eF~~~~d~l~-----~~~r~~FidFLerScTaEFSGflLyKEl~rrlk~ 166 (302)
.+.++| ++.|++++ |.|..-.+--+||......+. ++.++.|- .+-.+=+|++-+.||.+=++.
T Consensus 172 ~pte~e~~fi~~mf~~~--D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk-----~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIV--DYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFK-----AADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHH-----HhCCCCCCcCCHHHHHHHHHh
Confidence 344444 88889886 667767777778876655543 22444443 345566899999999876654
No 104
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=20.20 E-value=1.1e+02 Score=24.17 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=32.6
Q ss_pred ccHHHHHHHHHHHhhccCCccccc-ChhHHHHhhcCChHHHHHHHHHHHhh
Q 022114 97 LNQAEFEALLQEFKTDYNQTHFVR-NKEFKEAADKMQGPLRQIFVEFLERS 146 (302)
Q Consensus 97 ~~r~E~~Aml~Efr~DyNr~HFvR-~~eF~~~~d~l~~~~r~~FidFLerS 146 (302)
...+|++.++..--.-..-+.--- .==|...|.+++++.+.++++-|++.
T Consensus 13 ~s~~elk~~I~daI~sgEEk~LPGLGVlFE~~W~~~~~~ek~~m~~~l~~~ 63 (65)
T TIGR03092 13 NTKEQLEATIVDAIQSGEEKMLPGLGVLFEAIWKHANEQEKDEMLETLEQG 63 (65)
T ss_pred CCHHHHHHHHHHHHhccchhcCCccHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345677777766433222111100 01379999999999999999999874
No 105
>PRK10236 hypothetical protein; Provisional
Probab=20.17 E-value=1.1e+02 Score=29.06 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhccCCcccccCh-------hHHHHhhcCChHHHHHHHHHHHhhh
Q 022114 99 QAEFEALLQEFKTDYNQTHFVRNK-------EFKEAADKMQGPLRQIFVEFLERSC 147 (302)
Q Consensus 99 r~E~~Aml~Efr~DyNr~HFvR~~-------eF~~~~d~l~~~~r~~FidFLerSc 147 (302)
++=+.-....++..||++-=+-+- =+.++|++||++.|++|.+=|..|.
T Consensus 90 reIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~a~~kms~eE~~~L~~~l~~~l 145 (237)
T PRK10236 90 RAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARV 145 (237)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHhhhc
Confidence 334444555666666664332222 2478999999999999999998884
No 106
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=20.14 E-value=1.1e+02 Score=24.89 Aligned_cols=41 Identities=24% Similarity=0.560 Sum_probs=31.1
Q ss_pred hhhhHhhhhccccchhHHHHHHhhCccc--hhhhhhHHHHHHHHHHH
Q 022114 253 FKYFENWCQDENRHGDFFSALMKAQPQF--LNDWKAKLWARFFCLSV 297 (302)
Q Consensus 253 Fk~Fe~WCqDEnRHGdfFa~lmraqP~l--l~g~~~kLW~RFFLLsV 297 (302)
++-+++||+|. +....++..+|.+ |..-...|..||+-.+.
T Consensus 29 ~~iL~e~c~~~----~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~~ 71 (115)
T PF14663_consen 29 LEILEEACEDK----EYLEYLVSLRPSLDHLGDIGSPLLLRFLSTPS 71 (115)
T ss_pred HHHHHHHHhch----hhHHHHHHcCcHHHHHHHcCHHHHHHHHcchH
Confidence 58899999998 7777788888887 44434778888875543
Done!