BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022115
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 158/239 (66%)
Query: 60 SPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119
+ P S + ++ P +G RDFPPE MRLR +LF F +R FGFEE D PVLESE L
Sbjct: 16 TQGPGSMQMNMVETEPVQGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEEL 75
Query: 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
+IRKAGEEI +Q++ F +G RVALRPE+TPSLAR ++ KG+S+ LP KW+++ QCW
Sbjct: 76 YIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARQLLAKGRSLLLPAKWYSIPQCWRY 135
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239
EHYQWNMDIIGV +V++E EL+ + T + +G+++ DVG +I+SRK+LQ
Sbjct: 136 EAITRGRRREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQT 195
Query: 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 298
V+ + F VC+I+DK+EKLP + + L + G+ ++ + LS+K++ E+
Sbjct: 196 VVEQAGVSADKFAPVCVIVDKMEKLPREEVVAQLAAIGLESNVVDAITSTLSLKTIDEI 254
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 230 bits (586), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 159/243 (65%), Gaps = 2/243 (0%)
Query: 56 ARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLE 115
A++ P + ++ ++ P +G RDFPPE MR R LF F ++ FGFEE D PVLE
Sbjct: 14 AQTQGPGSMQKNM--VETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLE 71
Query: 116 SEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQ 175
SE L+IRKAGEEI +Q++ F +G RVALRPE+TPSLARL++ KG+S+ LP KW+++ Q
Sbjct: 72 SEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQ 131
Query: 176 CWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235
CW EHYQWNMDI+GV +V+AE EL+ + + +G+++ DVG +++SRK
Sbjct: 132 CWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRK 191
Query: 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295
VLQ V+ + F VC+I+DK+EK+P + ++ L G+ ++ + LS+KS+
Sbjct: 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSI 251
Query: 296 TEL 298
E+
Sbjct: 252 DEI 254
>pdb|1WU7|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
pdb|1WU7|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From
Thermoplasma Acidophilum
Length = 434
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 10/217 (4%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
++ + +G RDF PED + ++F +E + FGF +DFP LE L+ K+GEE+
Sbjct: 3 RLQIEKIRGFRDFYPEDXDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELL 62
Query: 130 DQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXE 189
Q Y F D+G R V L PE TPS R V + K + PL+W++ + W E
Sbjct: 63 QQTYSFVDKGGREVTLIPEATPSTVRXVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYRE 121
Query: 190 HYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV-GFRISSRKVLQEVL--RCHSI 246
HYQ+N DI G + A+AE+I+ + R+G+ D+ RI+SRK+ +E++ S
Sbjct: 122 HYQFNADIFGSDSPEADAEVIALASSILDRLGL--QDIYEIRINSRKIXEEIIGGXTSSD 179
Query: 247 PEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAI 283
P +F IID+ K+ + + L+SAG+ E +
Sbjct: 180 PFSVFS----IIDRYHKISREEFVDQLRSAGIGEDGV 212
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 95/191 (49%), Gaps = 12/191 (6%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQL 132
P+GT+D PED + ++ + E+ + ++E+ P+ ES LF R G+ ++ ++
Sbjct: 5 PRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEM 64
Query: 133 YCFEDRGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWXXXXXXXXXXXEH 190
Y F+D+G+R + LRPE T ++ R I+ + + P+K + G + +
Sbjct: 65 YTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQF 124
Query: 191 YQWNMDIIGVPAVTAEAELISSIITFFKRIG-----ITASDVGFRISSRKVLQEVLRCHS 245
Q+ ++ IG + +AE+++ ++ ++ G + + VG ++SRK E L H
Sbjct: 125 NQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVG-DMASRKEYNEALVKHF 183
Query: 246 IPE-HLFGKVC 255
P H F C
Sbjct: 184 EPVIHEFCSDC 194
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 11/209 (5%)
Query: 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI 128
QK + PKGTRD+ P M +R +F + G E +D PV E + + K GE+
Sbjct: 63 QKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDS 122
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXX 185
+ +Y +D+G ++LR +LT AR L + K ++ K + + + +
Sbjct: 123 K-LIYDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRG 177
Query: 186 XXXEHYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCH 244
E YQ + DI G + +AE + + + I D +++ R++L +
Sbjct: 178 RYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAIC 235
Query: 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDL 273
+ + F +C +DK++K+ + +KN++
Sbjct: 236 GVSDSKFRTICSSVDKLDKVSWEEVKNEM 264
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 11/205 (5%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQL 132
+ PKGTRD+ P M +R +F + G E +D PV E + + K GE+ + +
Sbjct: 14 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSK-LI 72
Query: 133 YCFEDRGNRRVALRPELTPSLAR-LVIQKGKSVSLPLKWFAVGQCWXXX--XXXXXXXXE 189
Y +D+G ++LR +LT AR L + K ++ K + + + + E
Sbjct: 73 YDLKDQGGELLSLRYDLTVPFARYLAMNKLTNI----KRYHIAKVYRRDNPAMTRGRYRE 128
Query: 190 HYQWNMDIIG-VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248
YQ + DI G + +AE + + + I D +++ R++L + + +
Sbjct: 129 FYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI--GDFLVKVNDRRILDGMFAICGVSD 186
Query: 249 HLFGKVCIIIDKIEKLPLDVIKNDL 273
F +C +DK++K+ + +KN++
Sbjct: 187 SKFRTICSSVDKLDKVSWEEVKNEM 211
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 8/164 (4%)
Query: 63 PVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR 122
P++ ++Q I +G D+ P + + + + V +G+ E+ P++E LF R
Sbjct: 7 PMAKNIQAI-----RGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKR 61
Query: 123 KAGEE---IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXX 179
GE + ++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 62 AIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRH 121
Query: 180 XXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223
+ +Q ++ G+ +AELI +++ +GI+
Sbjct: 122 ERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS 165
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 4 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 63
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 64 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 123
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223
+ +Q ++ G+ +AELI +++ +GI+
Sbjct: 124 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS 158
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---I 128
++ +G D+ P + + + + V +G+ E+ P++E LF R GE +
Sbjct: 3 NIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVV 62
Query: 129 RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXX 188
++Y FEDR + LRPE T R I+ G + + + +G +
Sbjct: 63 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYR 122
Query: 189 EHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223
+ +Q ++ G+ +AELI +++ +GI+
Sbjct: 123 QFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIS 157
>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
Burkholderia Thailandensis Bound To Histidine
Length = 467
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 80/174 (45%), Gaps = 5/174 (2%)
Query: 56 ARSLSPSPVSDDLQKID-VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVL 114
A++ P +++ +K++ + KG D P+D L + + + R +G++ + P++
Sbjct: 14 AQTQGPGSMTEQKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIV 73
Query: 115 ESEALFIRKAGEE---IRDQLYCFEDRGN-RRVALRPELTPSLARLVIQKGKSVSLPLKW 170
E LF R GE + ++Y F D N + LRPE T ++ R I+ P +
Sbjct: 74 EHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEHNMLYDGPKRL 133
Query: 171 FAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224
+ +G + + +Q ++ +G A+AE++ ++ +G+T
Sbjct: 134 WYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLTG 187
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLY 133
+GT+D +++R+ + ++V G E+ P+ E +F + G +R +++
Sbjct: 7 RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMF 66
Query: 134 CFEDRGNRRVALRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWXXXXXXXXXXXEHYQ 192
F+DRG R + LRPE T ++ R ++ G V P++ + G + + +Q
Sbjct: 67 TFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQ 126
Query: 193 WNMDIIGVPAVTAEAELISSIITFFKRIGI--------TASDVGFRISSRKVLQEVLRCH 244
N + +G +AE + + K +G+ + D R L+EVL H
Sbjct: 127 VNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPH 186
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 20/240 (8%)
Query: 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR 129
KI+ + P G +F P + RL +L + V +GF ++ P +E + ++ G +
Sbjct: 9 KINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEV-LQAKGNQGD 67
Query: 130 DQLYCFE---------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVG 174
+ +Y E D G+ AL+ + T LA + + ++ P +
Sbjct: 68 NIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQXD 127
Query: 175 QCWXXXXXXXXXXXEHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGITASDVGFRIS 232
+ + Q ++D++G ++ +A+ + I F+ + I D RI+
Sbjct: 128 VVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQXPAIITEIFEAVNI--GDFVIRIN 185
Query: 233 SRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 292
+RKVL + +I E IID +EK+ +K +L+ G++ ++++ + I
Sbjct: 186 NRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKI 245
>pdb|3OD1|A Chain A, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
pdb|3OD1|B Chain B, The Crystal Structure Of An Atp Phosphoribosyltransferase
Regulatory SubunitHISTIDYL-Trna Synthetase From Bacillus
Halodurans C
Length = 400
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 3/149 (2%)
Query: 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLES-EALFIRKAGEEIRDQLYC 134
P G RD PE + + + E L+G++ ++ P LE E + + A + QL+
Sbjct: 13 PFGXRDTLPEWYKTKKNICDQXTEEINLWGYDXIETPTLEYYETVGVVSA--ILDQQLFK 70
Query: 135 FEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWN 194
D+ + LRP+ T +ARLV K + PL+ + E Q
Sbjct: 71 LLDQQGNTLVLRPDXTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLG 130
Query: 195 MDIIGVPAVTAEAELISSIITFFKRIGIT 223
+++IG +A+ E+I+ I KR G++
Sbjct: 131 VELIGDGTASADGEVIALXIAALKRAGLS 159
>pdb|3RAC|A Chain A, Crystal Strucutre Of Histidine--Trna Ligase Subunit From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 373
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR-KAGEEIRDQ 131
+ P G +D P+ + R + G+E V + E +R ++ E RD
Sbjct: 23 ADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDW 82
Query: 132 LYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKW 170
+ F D G VALRPE+TPS+AR+ + + P++W
Sbjct: 83 IRLF-DGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRW 120
>pdb|2Q7E|A Chain A, The Structure Of Pyrrolysyl-trna Synthetase Bound To An
Atp Analogue
pdb|2Q7G|A Chain A, Pyrrolysine Trna Synthetase Bound To A Pyrrolysine
Analogue (Cyc) And Atp
pdb|2Q7H|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
pdb|2ZIM|A Chain A, Pyrrolysyl-Trna Synthetase Bound To Adenylated Pyrrolysine
And Pyrophosphate
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|2E3C|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase
pdb|2ZCE|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Pyrrolysine And An Atp
Analogue
pdb|2ZIN|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Boclys And An Atp
Analogue
pdb|2ZIO|A Chain A, Crystal Structure Of The Catalytic Domain Of Pyrrolysyl-
Trna Synthetase In Complex With Aloclys-Amp And Pnp
pdb|3VQV|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Amppnp
(Re-Refined)
pdb|3VQX|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|B Chain B, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|C Chain C, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQX|D Chain D, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Triclinic Crystal Form
pdb|3VQY|A Chain A, Crystal Structure Of The Catalytic Domain Of
Pyrrolysyl-Trna Synthetase In Complex With Boclys And
Amppnp (Form 2)
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N +G
Sbjct: 133 CLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|3QTC|A Chain A, Crystal Structure Of The Catalytic Domain Of Mmomers, An
O-Methyl Tyrosyl-Trna Synthetase Evolved From
Methanosarcina Mazei Pylrs, Complexed With O-Methyl
Tyrosine And Amp-Pnp
Length = 290
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 18/147 (12%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 77 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERMGIDNDTELSKQIF----RVDKNF 131
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHY-QWNMDIIGVPA 202
LRP LTP+L + + +++ P+K F +G C+ EH ++ M +
Sbjct: 132 CLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCY----RKESDGKEHLEEFTMLVFWQMG 187
Query: 203 VTAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 188 SGCTRENLESIITDFLNHLGIDFKIVG 214
>pdb|3VQW|A Chain A, Crystal Structure Of The Semet Substituted Catalytic
Domain Of Pyrrolysyl-Trna Synthetase
Length = 291
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 91 NWLFHNFQEVSRLF---GFEEVDFPVLESEALFIRKAG----EEIRDQLYCFEDRGNRRV 143
N+L +E++R F GF E+ P+L +I + G E+ Q++ R ++
Sbjct: 78 NYLGKLEREITRFFVDRGFLEIKSPIL-IPLEYIERXGIDNDTELSKQIF----RVDKNF 132
Query: 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWXXXXXXXXXXXEHYQWNMDIIGVPAV 203
LRP L P+L + + +++ P+K F +G C+ E N G
Sbjct: 133 CLRPXLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTXLNFCQXGSGCT 192
Query: 204 TAEAELISSIIT-FFKRIGITASDVG 228
E + SIIT F +GI VG
Sbjct: 193 R---ENLESIITDFLNHLGIDFKIVG 215
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 243 CHSIPE----HLFGKVCIIIDKIEKLPLDVIKNDL---KSAGMSEAAIEELLRVLSIKSL 295
C SIP +F K +LP D+I N KSAG+ E++L LSI SL
Sbjct: 318 CSSIPNSEKAEIFPDYINFSKKFCELPFDIIDNKAHINKSAGLGIVIHEDILSELSIYSL 377
Query: 296 TE 297
E
Sbjct: 378 DE 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,381,206
Number of Sequences: 62578
Number of extensions: 333786
Number of successful extensions: 680
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 30
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)