Query 022115
Match_columns 302
No_of_seqs 183 out of 1830
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1936 Histidyl-tRNA syntheta 100.0 2.1E-54 4.4E-59 408.6 19.5 226 67-298 54-283 (518)
2 PLN02530 histidine-tRNA ligase 100.0 1.8E-52 4E-57 415.7 29.9 260 40-301 39-298 (487)
3 PLN02972 Histidyl-tRNA synthet 100.0 8.1E-48 1.8E-52 392.4 26.1 219 70-294 324-544 (763)
4 COG0124 HisS Histidyl-tRNA syn 100.0 2.4E-48 5.3E-53 377.3 21.2 217 70-294 1-220 (429)
5 PRK12420 histidyl-tRNA synthet 100.0 5.3E-48 1.1E-52 377.8 23.5 225 70-298 1-227 (423)
6 PRK12292 hisZ ATP phosphoribos 100.0 1.7E-47 3.7E-52 370.8 25.0 216 72-294 2-218 (391)
7 PRK12421 ATP phosphoribosyltra 100.0 2.7E-46 5.8E-51 362.4 25.5 217 72-294 6-223 (392)
8 PF13393 tRNA-synt_His: Histid 100.0 1.5E-44 3.2E-49 339.2 21.5 210 78-294 1-211 (311)
9 TIGR00443 hisZ_biosyn_reg ATP 100.0 6.2E-44 1.3E-48 336.6 24.8 209 80-294 1-209 (314)
10 CHL00201 syh histidine-tRNA sy 100.0 9.8E-41 2.1E-45 327.2 21.7 165 72-238 3-171 (430)
11 PRK12295 hisZ ATP phosphoribos 100.0 4.8E-40 1E-44 316.6 24.2 169 88-263 5-174 (373)
12 TIGR00442 hisS histidyl-tRNA s 100.0 7.4E-40 1.6E-44 317.4 24.1 209 74-291 1-214 (397)
13 PRK12293 hisZ ATP phosphoribos 100.0 8.7E-40 1.9E-44 304.0 21.7 165 71-251 3-167 (281)
14 COG3705 HisZ ATP phosphoribosy 100.0 3.8E-40 8.2E-45 315.1 19.0 217 71-294 1-217 (390)
15 cd00773 HisRS-like_core Class 100.0 4.4E-37 9.5E-42 282.6 21.2 191 86-278 1-191 (261)
16 PRK00037 hisS histidyl-tRNA sy 100.0 5.3E-37 1.2E-41 298.6 18.0 173 70-248 1-186 (412)
17 PRK12294 hisZ ATP phosphoribos 100.0 2.9E-30 6.4E-35 238.8 21.0 171 84-275 4-176 (272)
18 PRK00413 thrS threonyl-tRNA sy 100.0 1.2E-28 2.5E-33 252.5 15.8 190 73-282 256-454 (638)
19 PRK12305 thrS threonyl-tRNA sy 99.9 1.8E-27 3.8E-32 241.2 14.1 160 74-236 193-361 (575)
20 cd00779 ProRS_core_prok Prolyl 99.9 5E-26 1.1E-30 209.1 10.0 166 73-242 17-191 (255)
21 PRK14799 thrS threonyl-tRNA sy 99.9 1.4E-25 3E-30 225.1 13.9 197 74-289 155-360 (545)
22 cd00771 ThrRS_core Threonyl-tR 99.9 1.2E-24 2.5E-29 204.2 17.7 181 73-259 16-205 (298)
23 cd00670 Gly_His_Pro_Ser_Thr_tR 99.9 7.9E-25 1.7E-29 196.9 14.0 149 87-238 2-161 (235)
24 PRK09194 prolyl-tRNA synthetas 99.9 1.8E-24 3.9E-29 218.9 16.1 165 73-241 33-206 (565)
25 TIGR00418 thrS threonyl-tRNA s 99.9 4.8E-24 1E-28 215.6 16.8 160 71-234 182-353 (563)
26 cd00772 ProRS_core Prolyl-tRNA 99.9 6.8E-23 1.5E-27 189.2 16.5 163 69-235 14-191 (264)
27 KOG1035 eIF-2alpha kinase GCN2 99.9 3.3E-23 7.1E-28 216.5 16.0 171 80-261 925-1095(1351)
28 TIGR00409 proS_fam_II prolyl-t 99.9 5E-23 1.1E-27 208.0 16.0 161 73-240 33-205 (568)
29 PLN02908 threonyl-tRNA synthet 99.9 3.1E-23 6.6E-28 214.0 13.9 183 74-263 308-499 (686)
30 PRK12444 threonyl-tRNA synthet 99.9 3.1E-22 6.6E-27 205.4 15.6 155 74-234 261-425 (639)
31 cd00774 GlyRS-like_core Glycyl 99.9 2.8E-21 6E-26 177.5 11.7 149 73-232 18-177 (254)
32 PRK12325 prolyl-tRNA synthetas 99.8 1.4E-19 3.1E-24 178.2 14.0 148 73-223 33-191 (439)
33 PF00587 tRNA-synt_2b: tRNA sy 99.8 2.9E-19 6.2E-24 154.6 13.5 146 89-237 1-156 (173)
34 TIGR02367 PylS pyrrolysyl-tRNA 99.8 8.2E-19 1.8E-23 169.9 17.0 134 88-230 240-376 (453)
35 cd00778 ProRS_core_arch_euk Pr 99.8 5E-19 1.1E-23 163.2 10.7 151 70-223 15-182 (261)
36 TIGR00408 proS_fam_I prolyl-tR 99.7 5.1E-18 1.1E-22 168.5 10.4 154 69-223 20-188 (472)
37 PRK04172 pheS phenylalanyl-tRN 99.7 9.6E-18 2.1E-22 167.3 11.1 149 68-223 215-404 (489)
38 PRK08661 prolyl-tRNA synthetas 99.7 2.9E-17 6.3E-22 163.4 12.0 152 69-223 26-193 (477)
39 PTZ00326 phenylalanyl-tRNA syn 99.7 2.3E-16 5E-21 155.7 14.5 177 69-249 212-461 (494)
40 PRK09537 pylS pyrolysyl-tRNA s 99.7 6.4E-16 1.4E-20 149.9 13.2 128 90-223 206-336 (417)
41 cd00768 class_II_aaRS-like_cor 99.6 1.4E-14 2.9E-19 127.0 14.6 129 90-222 2-134 (211)
42 cd00770 SerRS_core Seryl-tRNA 99.5 5.8E-14 1.3E-18 131.9 13.1 144 76-223 41-196 (297)
43 COG0442 ProS Prolyl-tRNA synth 99.5 4.4E-14 9.5E-19 140.1 12.3 163 68-237 29-202 (500)
44 KOG2324 Prolyl-tRNA synthetase 99.5 3.8E-13 8.2E-18 126.4 10.5 164 71-238 36-209 (457)
45 PLN02837 threonine-tRNA ligase 99.4 1.8E-12 4E-17 132.7 15.1 157 75-235 235-401 (614)
46 PRK04173 glycyl-tRNA synthetas 99.4 5.6E-12 1.2E-16 124.9 14.3 157 74-233 25-255 (456)
47 PRK03991 threonyl-tRNA synthet 99.4 1.1E-11 2.4E-16 126.6 16.5 158 71-233 209-379 (613)
48 TIGR00414 serS seryl-tRNA synt 99.3 3.8E-11 8.2E-16 117.9 14.9 143 77-223 163-317 (418)
49 PRK09350 poxB regulator PoxA; 99.2 1.2E-11 2.6E-16 116.7 7.1 107 85-201 3-112 (306)
50 PRK05431 seryl-tRNA synthetase 99.2 1.6E-10 3.5E-15 113.6 14.4 147 76-229 159-318 (425)
51 COG0441 ThrS Threonyl-tRNA syn 99.2 5.9E-11 1.3E-15 120.0 9.7 158 74-235 207-373 (589)
52 cd00669 Asp_Lys_Asn_RS_core As 99.1 1.2E-09 2.5E-14 101.5 11.2 98 88-200 2-102 (269)
53 PRK00960 seryl-tRNA synthetase 99.0 4.1E-09 9E-14 105.4 11.9 153 70-223 206-397 (517)
54 KOG1637 Threonyl-tRNA syntheta 98.9 3E-09 6.5E-14 103.1 8.5 184 71-261 176-368 (560)
55 PLN02678 seryl-tRNA synthetase 98.9 1.3E-08 2.7E-13 100.6 13.0 146 79-229 166-325 (448)
56 PF01409 tRNA-synt_2d: tRNA sy 98.9 4.5E-08 9.8E-13 89.8 14.0 132 87-223 16-157 (247)
57 TIGR00415 serS_MJ seryl-tRNA s 98.9 4.5E-08 9.8E-13 97.2 14.4 160 70-233 206-404 (520)
58 TIGR00468 pheS phenylalanyl-tR 98.8 4.6E-08 1E-12 91.9 12.4 143 69-223 55-204 (294)
59 PLN02853 Probable phenylalanyl 98.8 1.7E-07 3.6E-12 93.0 14.6 167 81-249 214-446 (492)
60 cd00496 PheRS_alpha_core Pheny 98.7 2.3E-07 4.9E-12 83.5 13.9 123 90-221 3-132 (218)
61 PLN02320 seryl-tRNA synthetase 98.7 5.7E-08 1.2E-12 96.8 10.6 155 76-236 220-389 (502)
62 cd00777 AspRS_core Asp tRNA sy 98.7 1.1E-07 2.3E-12 88.9 11.5 99 88-201 2-103 (280)
63 cd00776 AsxRS_core Asx tRNA sy 98.7 1.9E-07 4.1E-12 88.9 11.3 106 83-203 20-126 (322)
64 PRK00488 pheS phenylalanyl-tRN 98.6 8.5E-07 1.8E-11 84.5 15.1 138 71-220 93-236 (339)
65 COG0423 GRS1 Glycyl-tRNA synth 98.6 2.5E-07 5.5E-12 91.5 10.5 127 74-203 27-226 (558)
66 PRK14894 glycyl-tRNA synthetas 98.6 7.8E-07 1.7E-11 88.3 13.3 154 73-229 26-232 (539)
67 TIGR00389 glyS_dimeric glycyl- 98.5 4.1E-07 8.9E-12 91.8 10.5 123 76-201 26-220 (551)
68 TIGR00462 genX lysyl-tRNA synt 98.4 5.2E-07 1.1E-11 85.2 7.5 102 88-201 2-107 (304)
69 COG0016 PheS Phenylalanyl-tRNA 98.4 4.5E-06 9.8E-11 79.3 13.4 170 71-248 96-297 (335)
70 PF00152 tRNA-synt_2: tRNA syn 98.4 4.1E-06 8.8E-11 79.9 12.8 105 86-203 21-130 (335)
71 cd00775 LysRS_core Lys_tRNA sy 98.4 5.7E-06 1.2E-10 79.0 13.3 101 86-201 7-110 (329)
72 COG2269 Truncated, possibly in 98.4 6.6E-06 1.4E-10 76.0 12.7 169 85-274 14-194 (322)
73 TIGR00459 aspS_bact aspartyl-t 98.3 4.9E-06 1.1E-10 84.8 12.5 102 86-201 137-240 (583)
74 COG0172 SerS Seryl-tRNA synthe 98.3 9.6E-06 2.1E-10 79.5 13.7 145 75-223 162-318 (429)
75 PRK06462 asparagine synthetase 98.3 5E-06 1.1E-10 79.6 10.5 109 84-201 27-139 (335)
76 PLN02734 glycyl-tRNA synthetas 98.3 3.7E-06 8E-11 86.6 9.8 127 73-202 95-313 (684)
77 PRK00476 aspS aspartyl-tRNA sy 98.2 9.2E-06 2E-10 83.1 11.7 103 85-201 139-243 (588)
78 PRK00484 lysS lysyl-tRNA synth 98.2 1.4E-05 3E-10 80.2 12.7 102 85-201 170-274 (491)
79 PRK03932 asnC asparaginyl-tRNA 98.2 1.1E-05 2.3E-10 80.3 11.3 103 85-201 131-242 (450)
80 TIGR00458 aspS_arch aspartyl-t 98.2 1.5E-05 3.2E-10 78.8 12.0 102 85-201 131-234 (428)
81 COG0173 AspS Aspartyl-tRNA syn 98.2 1.1E-05 2.4E-10 80.5 11.0 105 85-201 139-243 (585)
82 PRK12445 lysyl-tRNA synthetase 98.2 1.3E-05 2.7E-10 80.8 11.3 103 86-201 183-286 (505)
83 PRK05159 aspC aspartyl-tRNA sy 98.1 2.2E-05 4.7E-10 77.8 12.0 103 85-201 134-237 (437)
84 PLN02903 aminoacyl-tRNA ligase 98.1 2.7E-05 5.9E-10 80.1 12.5 103 85-201 201-306 (652)
85 PRK12820 bifunctional aspartyl 98.1 2.2E-05 4.7E-10 81.5 11.8 105 85-201 154-258 (706)
86 PTZ00417 lysine-tRNA ligase; P 98.1 2.9E-05 6.2E-10 79.3 11.6 103 86-201 252-355 (585)
87 PTZ00385 lysyl-tRNA synthetase 98.1 3.1E-05 6.7E-10 79.7 11.8 103 86-201 232-335 (659)
88 PLN02502 lysyl-tRNA synthetase 98.0 2.5E-05 5.4E-10 79.3 10.4 103 86-201 228-331 (553)
89 PLN02850 aspartate-tRNA ligase 98.0 2.1E-05 4.6E-10 79.5 9.8 101 86-200 224-326 (530)
90 TIGR00499 lysS_bact lysyl-tRNA 98.0 3E-05 6.5E-10 78.0 10.0 104 85-201 170-274 (496)
91 TIGR00457 asnS asparaginyl-tRN 98.0 5.7E-05 1.2E-09 75.2 11.6 102 86-201 135-245 (453)
92 PRK09616 pheT phenylalanyl-tRN 98.0 0.00011 2.5E-09 74.8 13.2 132 87-222 358-491 (552)
93 KOG2411 Aspartyl-tRNA syntheta 97.9 3.2E-05 6.9E-10 76.2 8.4 117 86-218 177-294 (628)
94 KOG2784 Phenylalanyl-tRNA synt 97.9 1.2E-05 2.6E-10 76.4 5.1 161 88-250 212-438 (483)
95 PTZ00401 aspartyl-tRNA synthet 97.9 5E-05 1.1E-09 77.2 9.6 100 86-199 212-313 (550)
96 PRK02983 lysS lysyl-tRNA synth 97.8 9.3E-05 2E-09 80.7 9.2 103 86-201 769-872 (1094)
97 KOG2509 Seryl-tRNA synthetase 97.8 0.00026 5.7E-09 68.9 11.2 145 75-223 171-331 (455)
98 PTZ00425 asparagine-tRNA ligas 97.7 0.00045 9.8E-09 70.5 12.4 33 86-118 214-246 (586)
99 PLN02221 asparaginyl-tRNA synt 97.7 0.00046 9.9E-09 70.4 12.4 33 86-118 170-202 (572)
100 TIGR00470 sepS O-phosphoseryl- 97.7 0.00023 5E-09 70.4 9.3 108 140-249 180-316 (533)
101 PLN02603 asparaginyl-tRNA synt 97.6 0.00046 9.9E-09 70.4 10.9 101 87-200 226-355 (565)
102 cd00769 PheRS_beta_core Phenyl 97.6 0.00051 1.1E-08 60.7 9.4 127 91-222 3-139 (198)
103 COG0017 AsnS Aspartyl/asparagi 97.5 0.00088 1.9E-08 65.9 10.9 101 86-201 133-234 (435)
104 PLN02532 asparagine-tRNA synth 97.5 0.00097 2.1E-08 68.6 11.3 32 86-117 234-265 (633)
105 PLN02788 phenylalanine-tRNA sy 97.4 0.0024 5.3E-08 62.5 12.6 133 80-222 60-213 (402)
106 COG1190 LysU Lysyl-tRNA synthe 97.2 0.0032 7E-08 62.6 11.6 95 88-195 181-276 (502)
107 TIGR00471 pheT_arch phenylalan 96.7 0.015 3.3E-07 59.3 11.9 133 87-223 361-494 (551)
108 KOG1885 Lysyl-tRNA synthetase 96.6 0.0027 5.9E-08 62.5 4.8 97 86-195 224-321 (560)
109 PLN02265 probable phenylalanyl 96.3 0.022 4.8E-07 58.7 10.1 148 68-223 380-531 (597)
110 KOG2298 Glycyl-tRNA synthetase 96.0 0.0033 7.2E-08 62.0 1.9 125 75-202 34-247 (599)
111 PRK07080 hypothetical protein; 95.5 0.26 5.6E-06 46.8 12.1 160 73-237 30-222 (317)
112 TIGR00472 pheT_bact phenylalan 95.4 0.17 3.6E-06 54.1 11.9 125 95-223 498-632 (798)
113 TIGR00469 pheS_mito phenylalan 95.3 0.16 3.4E-06 50.7 10.5 104 87-195 41-161 (460)
114 PRK00629 pheT phenylalanyl-tRN 95.1 0.22 4.7E-06 53.2 11.9 130 88-223 487-625 (791)
115 KOG0554 Asparaginyl-tRNA synth 95.0 0.063 1.4E-06 52.2 6.7 107 83-203 128-242 (446)
116 KOG4163 Prolyl-tRNA synthetase 95.0 0.077 1.7E-06 52.1 7.3 149 67-219 78-243 (551)
117 KOG0556 Aspartyl-tRNA syntheta 94.5 0.11 2.3E-06 50.8 6.8 127 68-217 214-342 (533)
118 CHL00192 syfB phenylalanyl-tRN 94.3 0.29 6.2E-06 51.6 10.1 126 86-222 396-532 (704)
119 COG2024 Phenylalanyl-tRNA synt 93.0 0.063 1.4E-06 52.0 2.3 83 139-223 179-262 (536)
120 PRK06253 O-phosphoseryl-tRNA s 92.7 0.35 7.5E-06 48.9 7.2 81 138-223 179-263 (529)
121 COG0072 PheT Phenylalanyl-tRNA 89.6 1.1 2.4E-05 46.8 7.7 109 68-180 332-442 (650)
122 cd04750 Commd2 COMM_Domain con 76.9 23 0.0005 30.5 9.2 72 208-290 1-78 (166)
123 KOG0555 Asparaginyl-tRNA synth 75.9 11 0.00024 37.1 7.4 100 86-200 242-342 (545)
124 cd00673 AlaRS_core Alanyl-tRNA 67.9 77 0.0017 29.0 10.6 132 91-249 2-142 (232)
125 PF02797 Chal_sti_synt_C: Chal 61.8 89 0.0019 26.4 9.4 76 191-266 22-102 (151)
126 COG5499 Predicted transcriptio 54.9 35 0.00077 27.6 5.3 71 207-282 39-117 (120)
127 TIGR00344 alaS alanine--tRNA l 54.8 39 0.00084 36.7 7.3 129 92-249 1-139 (851)
128 cd04790 HTH_Cfa-like_unk Helix 54.6 62 0.0013 27.9 7.4 53 234-289 118-170 (172)
129 COG0013 AlaS Alanyl-tRNA synth 50.2 39 0.00084 36.7 6.4 133 90-249 8-149 (879)
130 PF11212 DUF2999: Protein of u 50.0 86 0.0019 23.5 6.3 44 239-286 34-77 (82)
131 cd07018 S49_SppA_67K_type Sign 48.0 90 0.0019 27.8 7.6 70 213-288 122-192 (222)
132 smart00027 EH Eps15 homology d 47.2 80 0.0017 24.0 6.3 48 246-293 4-56 (96)
133 PRK00252 alaS alanyl-tRNA synt 46.6 69 0.0015 34.9 7.7 132 91-249 5-145 (865)
134 PF08328 ASL_C: Adenylosuccina 45.1 1E+02 0.0022 25.1 6.7 54 234-289 56-109 (115)
135 PF01978 TrmB: Sugar-specific 40.8 25 0.00054 25.0 2.3 51 241-295 1-51 (68)
136 PLN03173 chalcone synthase; Pr 40.4 1.5E+02 0.0033 29.0 8.5 61 205-265 275-338 (391)
137 PLN03172 chalcone synthase fam 38.9 1.5E+02 0.0033 28.9 8.3 61 206-266 276-339 (393)
138 PF13348 Y_phosphatase3C: Tyro 37.9 59 0.0013 23.1 4.0 45 242-290 22-67 (68)
139 PF02091 tRNA-synt_2e: Glycyl- 37.9 1.1E+02 0.0025 28.5 6.6 55 165-224 43-101 (284)
140 TIGR03683 A-tRNA_syn_arch alan 37.7 38 0.00082 37.0 4.1 131 90-245 58-215 (902)
141 PRK01584 alanyl-tRNA synthetas 37.4 1.3E+02 0.0028 31.4 7.7 130 91-249 4-150 (594)
142 PF11181 YflT: Heat induced st 37.1 2E+02 0.0043 22.3 8.3 81 206-291 9-95 (103)
143 cd08315 Death_TRAILR_DR4_DR5 D 37.0 91 0.002 24.3 5.1 23 264-286 17-39 (96)
144 PF14747 DUF4473: Domain of un 34.9 63 0.0014 24.4 3.8 27 265-291 7-33 (82)
145 KOG2472 Phenylalanyl-tRNA synt 32.9 3.7E+02 0.0081 27.6 9.7 84 142-231 442-527 (578)
146 PLN03170 chalcone synthase; Pr 32.7 2.4E+02 0.0052 27.7 8.5 61 205-265 279-342 (401)
147 PLN03169 chalcone synthase fam 31.0 2.9E+02 0.0064 26.9 8.8 56 207-262 281-341 (391)
148 PF10820 DUF2543: Protein of u 30.8 1.6E+02 0.0034 22.0 5.1 61 234-294 10-79 (81)
149 TIGR00706 SppA_dom signal pept 30.7 1.3E+02 0.0027 26.5 5.7 66 213-286 106-172 (207)
150 PF11212 DUF2999: Protein of u 30.3 2.4E+02 0.0051 21.2 7.5 51 238-292 5-55 (82)
151 PF01411 tRNA-synt_2c: tRNA sy 29.9 59 0.0013 33.5 3.8 113 92-231 1-125 (552)
152 PF01418 HTH_6: Helix-turn-hel 29.1 2.3E+02 0.005 20.7 6.4 56 245-300 13-68 (77)
153 PF12763 EF-hand_4: Cytoskelet 28.9 1.3E+02 0.0027 23.9 4.8 48 246-293 4-55 (104)
154 cd04752 Commd4 COMM_Domain con 28.5 2.8E+02 0.0061 23.9 7.3 62 231-293 22-89 (174)
155 cd04749 Commd1_MURR1 COMM_Doma 28.4 2.2E+02 0.0049 24.8 6.6 61 230-290 13-87 (174)
156 TIGR00426 competence protein C 27.4 2.1E+02 0.0045 20.3 5.4 63 226-291 5-68 (69)
157 PRK13902 alaS alanyl-tRNA synt 27.2 84 0.0018 34.4 4.5 111 89-224 60-181 (900)
158 PLN02900 alanyl-tRNA synthetas 27.2 1.7E+02 0.0037 32.3 6.8 117 89-230 12-142 (936)
159 cd00733 GlyRS_alpha_core Class 27.1 1.3E+02 0.0029 27.9 5.2 55 165-224 44-102 (279)
160 PLN03168 chalcone synthase; Pr 27.0 3.6E+02 0.0078 26.3 8.6 58 209-266 278-338 (389)
161 PRK09348 glyQ glycyl-tRNA synt 26.8 1.3E+02 0.0029 28.0 5.1 55 165-224 48-106 (283)
162 cd08313 Death_TNFR1 Death doma 26.6 1.4E+02 0.0031 22.5 4.5 14 237-250 14-27 (80)
163 PF05379 Peptidase_C23: Carlav 26.5 1.8E+02 0.004 22.3 5.2 54 236-294 6-59 (89)
164 TIGR00388 glyQ glycyl-tRNA syn 26.3 1.4E+02 0.0031 27.9 5.2 55 165-224 45-103 (293)
165 cd04755 Commd7 COMM_Domain con 25.0 3.9E+02 0.0084 23.5 7.5 61 234-294 33-99 (180)
166 PRK14136 recX recombination re 24.7 2.3E+02 0.005 27.1 6.4 27 263-289 225-251 (309)
167 COG4388 Mu-like prophage I pro 24.4 2.5E+02 0.0055 26.8 6.5 122 109-250 63-191 (357)
168 PRK06253 O-phosphoseryl-tRNA s 23.5 1.6E+02 0.0034 30.3 5.4 119 92-261 51-170 (529)
169 PF03979 Sigma70_r1_1: Sigma-7 23.4 1.6E+02 0.0035 22.0 4.3 47 251-297 6-55 (82)
170 PF09012 FeoC: FeoC like trans 23.3 63 0.0014 23.2 2.0 39 253-294 4-42 (69)
171 PLN03152 hypothetical protein; 22.8 77 0.0017 28.8 2.8 17 34-50 37-53 (241)
172 cd07022 S49_Sppa_36K_type Sign 22.1 2.1E+02 0.0045 25.2 5.5 66 213-286 118-184 (214)
173 PRK13253 citrate lyase subunit 21.8 2E+02 0.0044 22.4 4.6 36 206-243 42-77 (92)
174 TIGR01608 citD citrate lyase a 21.8 1.5E+02 0.0033 23.2 3.9 46 207-259 43-88 (92)
175 PF09435 DUF2015: Fungal prote 21.1 1.3E+02 0.0029 24.9 3.6 36 244-280 80-120 (128)
176 PF13384 HTH_23: Homeodomain-l 20.9 96 0.0021 20.3 2.4 45 249-298 5-49 (50)
177 cd07023 S49_Sppa_N_C Signal pe 20.5 2.3E+02 0.005 24.7 5.4 65 214-286 112-177 (208)
178 PF06857 ACP: Malonate decarbo 20.4 1E+02 0.0022 23.8 2.6 34 208-243 43-76 (87)
No 1
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-54 Score=408.62 Aligned_cols=226 Identities=34% Similarity=0.617 Sum_probs=215.8
Q ss_pred cccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC
Q 022115 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 67 ~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR 146 (302)
.+.++.+++|+||+||-|+++.+|++|++.+.++|++||++.|+||+||..+++..++|++. +.+|.+.|++|+.++||
T Consensus 54 ~~~k~~lKtPKGTrD~~p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEds-kLiYdlkDQGGEl~SLR 132 (518)
T KOG1936|consen 54 FKKKFSLKTPKGTRDFSPEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDS-KLIYDLKDQGGELCSLR 132 (518)
T ss_pred cCcceeecCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhccccc-ceeEehhhcCCcEEEee
Confidence 45678999999999999999999999999999999999999999999999999999999985 89999999999999999
Q ss_pred CCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCC--CCCCccceeEeeEEEecc-CChhHHHHHHHHHHHHHHHcCCC
Q 022115 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~--~~gr~rEf~Q~g~EiiG~-~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
||+|+||||++|+|.. ..+|+|+|+.|||++.| .+||+||||||+|||.|. +.-.+|+|++.+++++|+.||+.
T Consensus 133 YDLTVPfARylAmNki---~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Ig 209 (518)
T KOG1936|consen 133 YDLTVPFARYLAMNKI---TSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIG 209 (518)
T ss_pred cccccHHHHHHHHccc---ccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCcc
Confidence 9999999999999843 59999999999999877 799999999999999995 66679999999999999999998
Q ss_pred CCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHH-HCCCCHHHHHHHHHHhcCCChHHH
Q 022115 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK-SAGMSEAAIEELLRVLSIKSLTEL 298 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~-~~gls~~~~~~l~~l~~~~g~~~~ 298 (302)
+|.|++||++|++++++.||+|++.+..+|..+||++|.+|++|+++|. +.|++++++++|.+++.++|+.+|
T Consensus 210 --d~~iKvNhRkiLdgmf~v~GVp~~~frtICSsIDKLdK~pwedVkkEmv~eKGlsee~ad~igeyv~~~g~~eL 283 (518)
T KOG1936|consen 210 --DYGIKVNHRKILDGMFAVCGVPEDKFRTICSSIDKLDKMPWEDVKKEMVFEKGLSEEAADRIGEYVSLKGLDEL 283 (518)
T ss_pred --ceEEEecHHHHHHHHHHHhCCCHHHhhhHHHhhhhhhcCCHHHHHHHHHHhcCCCHHHHHHHHHHhhhccHHHH
Confidence 8999999999999999999999999999999999999999999999996 699999999999999999998777
No 2
>PLN02530 histidine-tRNA ligase
Probab=100.00 E-value=1.8e-52 Score=415.67 Aligned_cols=260 Identities=73% Similarity=1.196 Sum_probs=238.4
Q ss_pred hhcccccccCCCCCCCccCCCCCCCCccccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH
Q 022115 40 LCALSSASNQNGGRSGARSLSPSPVSDDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL 119 (302)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~ 119 (302)
-|+|+.++. .+++++.+..+...++.++|+++++|+||+||+|+++..+++|++.++++|++|||++|.||+||++++
T Consensus 39 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el 116 (487)
T PLN02530 39 RCAASAAAG--GGRSGGTTAPPSVQEDGKPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEEL 116 (487)
T ss_pred chhhccccc--cccCCCCCCCCCCccccccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHH
Confidence 334444444 667777777777777899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEec
Q 022115 120 FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIG 199 (302)
Q Consensus 120 ~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG 199 (302)
|.++.|+++.++||+|.|++|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||
T Consensus 117 ~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG 196 (487)
T PLN02530 117 YIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIG 196 (487)
T ss_pred hccccCcccccceEEEECCCCCEEecCCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeC
Confidence 99888888889999999999999999999999999999998766678999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCC
Q 022115 200 VPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS 279 (302)
Q Consensus 200 ~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls 279 (302)
.++..+|+|+|.++.++|+.+|+++.++.|+|||+++++++|+.++++++.+..+++++|++++++.+.+++.|...|++
T Consensus 197 ~~~~~aDaEvi~l~~~~l~~lgl~~~~~~i~i~~~~i~~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~ 276 (487)
T PLN02530 197 VPGVEAEAELLAAIVTFFKRVGITSSDVGIKVSSRKVLQAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVS 276 (487)
T ss_pred CCCcchhHHHHHHHHHHHHHcCCCCCceEEEEcCHHHHHHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCC
Confidence 99999999999999999999999744699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHhcc
Q 022115 280 EAAIEELLRVLSIKSLTELEGW 301 (302)
Q Consensus 280 ~~~~~~l~~l~~~~g~~~~~~~ 301 (302)
.+.++.+.++++++.++.++++
T Consensus 277 ~~~~~~l~~l~~~~~~~~l~~~ 298 (487)
T PLN02530 277 EEAIEGILDVLSLKSLDDLEAL 298 (487)
T ss_pred HHHHHHHHHHHhccCHHHHHHH
Confidence 9999999999988877666543
No 3
>PLN02972 Histidyl-tRNA synthetase
Probab=100.00 E-value=8.1e-48 Score=392.42 Aligned_cols=219 Identities=27% Similarity=0.510 Sum_probs=206.2
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCC
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDl 149 (302)
++..++|+||+||+|+++..+++|++.++++|++|||.+|+||+||++|+|..++|++ .++||+|.|++|+.++||||+
T Consensus 324 ~~~~k~PkGtrD~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged-~k~mY~f~D~gGr~LaLRPDl 402 (763)
T PLN02972 324 RRLPKIPKGTRDFAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGED-SKLIYDLADQGGELCSLRYDL 402 (763)
T ss_pred hcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcc-hhheEEEECCCCCEEEeCCCC
Confidence 5677999999999999999999999999999999999999999999999998887876 468999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEecc-CChhHHHHHHHHHHHHHHHcCCCCCceE
Q 022115 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDVG 228 (302)
Q Consensus 150 T~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~-~~~~aDaEvi~l~~eil~~lgl~~~~~~ 228 (302)
|+|+||+++++.. .|+|+||+|+|||+++|+.||+|||+|||+||||. ++..+|+|||.++.++|+.+|+. ++.
T Consensus 403 TvPiAR~vA~n~~---~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~--df~ 477 (763)
T PLN02972 403 TVPFARYVAMNGI---TSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIG--TYE 477 (763)
T ss_pred hHHHHHHHHhCCC---CcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCC--ceE
Confidence 9999999999753 48999999999999999999999999999999997 55568999999999999999997 799
Q ss_pred EEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHHHHHhcCCC
Q 022115 229 FRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 229 I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l~~l~~~~g 294 (302)
|+|||+++++++++.||++++.+.++++++|++++.+|++++++| ++.|++.+.++.|.+++.++|
T Consensus 478 I~INh~~iL~~ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G 544 (763)
T PLN02972 478 VKLNHRKLLDGMLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERG 544 (763)
T ss_pred EEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998877 578999999999999998887
No 4
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-48 Score=377.26 Aligned_cols=217 Identities=35% Similarity=0.609 Sum_probs=197.1
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeC
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G~~l~LR 146 (302)
|+.++.|+||+||+|+++..+++|++.++++|++|||.+|.||+||+.++|.++.|+. +.++||.|.|++|+.++||
T Consensus 1 ~~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLR 80 (429)
T COG0124 1 MMKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALR 80 (429)
T ss_pred CCCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEec
Confidence 5678899999999999999999999999999999999999999999999999888887 6799999999999999999
Q ss_pred CCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCc
Q 022115 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD 226 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~ 226 (302)
||+|+|+||+++.|....+.|+|+||+|+|||||+||.||+|||+|+|+|+||.+++.+|||+|.++.++|++||+. +
T Consensus 81 pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~lGi~--~ 158 (429)
T COG0124 81 PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDSPDADAEVIALAVEILEALGIG--G 158 (429)
T ss_pred ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCCcccCHHHHHHHHHHHHHcCCC--c
Confidence 99999999999999887778999999999999999999999999999999999999999999999999999999998 7
Q ss_pred eEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 227 VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 227 ~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
++|+|||+++++++++.+|+ +++..|.+++|+++|. ++..|.+.+......+.|..+-...+
T Consensus 159 ~~l~iN~~g~l~~~~~~~gi--~~~~~l~~~ldk~~k~----~~~~L~e~~~~r~~~n~lr~ld~k~~ 220 (429)
T COG0124 159 FTLEINSRGILEGRLEYLGI--DQREALLRYLDKLDKI----GKLELDEDSKRRLKTNPLRVLDSKKD 220 (429)
T ss_pred EEEEEcCcccHHHHHHhhcc--hhHHHHHHHHhhhhhH----HHHHhhhhhhhhhhhchHHHHHhccc
Confidence 99999999999999999999 6789999999998765 55666555554445555555544443
No 5
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.3e-48 Score=377.79 Aligned_cols=225 Identities=32% Similarity=0.563 Sum_probs=209.5
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhc--cccccccEEEeeCCCCeEeeCC
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAG--EEIRDQLYCFEDRGNRRVALRP 147 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g--~~~~~~~~~f~D~~G~~l~LRp 147 (302)
||..++|+|++|++|.++.+++++++.++++|++|||.+|.||+||++++|..++| +++.+++|+|.|++|+.++|||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRp 80 (423)
T PRK12420 1 MMEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRY 80 (423)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccc
Confidence 67789999999999999999999999999999999999999999999999976533 5567889999999999999999
Q ss_pred CChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCce
Q 022115 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (302)
Q Consensus 148 DlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~ 227 (302)
|+|+|+||+++++. ..+.|+|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++|+.+|+ ++
T Consensus 81 D~T~~iaR~va~~~-~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~lg~---~~ 156 (423)
T PRK12420 81 DLTIPFAKVVAMNP-NIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRLNL---EV 156 (423)
T ss_pred cccHHHHHHHHhCc-CCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHCCC---CE
Confidence 99999999999874 346799999999999999999999999999999999999999999999999999999998 49
Q ss_pred EEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCChHHH
Q 022115 228 GFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 298 (302)
Q Consensus 228 ~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~~~~ 298 (302)
.|+|||+++++++++.||++++.+..+++++|++++++++++.+.|.+.|++.+.++.|.+++...|.+.+
T Consensus 157 ~i~l~~~~l~~~il~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~ 227 (423)
T PRK12420 157 TIQYNNRKLLNGILQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSI 227 (423)
T ss_pred EEEEcCHHHHHHHHHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999976664433
No 6
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=1.7e-47 Score=370.84 Aligned_cols=216 Identities=22% Similarity=0.367 Sum_probs=201.8
Q ss_pred ccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCCh
Q 022115 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELT 150 (302)
Q Consensus 72 ~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT 150 (302)
.+++|+||+|++|+++..++++++.++++|++|||.+|.||+||++++|..+.|+...+++|+|.|+ +|+.++||||+|
T Consensus 2 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T 81 (391)
T PRK12292 2 MWQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMT 81 (391)
T ss_pred CCCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCc
Confidence 4679999999999999999999999999999999999999999999999887777778899999999 999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||+++++....+.|+|+||+|+|||+++++.||+|||+|+|+|+||.++..+|+|||.++.++|+.+|+. ++.|+
T Consensus 82 ~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~lgl~--~~~i~ 159 (391)
T PRK12292 82 AQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKALGLP--NFTLD 159 (391)
T ss_pred HHHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHcCCC--CeEEE
Confidence 9999999987655578999999999999999999999999999999999999999999999999999999997 79999
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
|||+++++++++.+|+++++++.++++++++ +...+++.+. |++.+..+.|..++.++|
T Consensus 160 i~~~~i~~~il~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~--~l~~~~~~~l~~l~~~~g 218 (391)
T PRK12292 160 LGHVGLFRALLEAAGLSEELEEVLRRALANK---DYVALEELVL--DLSEELRDALLALPRLRG 218 (391)
T ss_pred eccHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999976 5666666655 889999999999998887
No 7
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=362.45 Aligned_cols=217 Identities=14% Similarity=0.220 Sum_probs=203.0
Q ss_pred ccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCCh
Q 022115 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELT 150 (302)
Q Consensus 72 ~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT 150 (302)
++++|+||+|++|++++.++++++.++++|++|||.+|.||+||++++|..+.|++...++|+|.|+ +|+.++||||+|
T Consensus 6 ~~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T 85 (392)
T PRK12421 6 RWLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADIT 85 (392)
T ss_pred ccCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCC
Confidence 3579999999999999999999999999999999999999999999999887788778889999999 699999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||+++++.. .+.|+|+||+|+|||+++++.||.|||+|+|+|+||.+++.+|+|||.++.++|+.+|++ +++|+
T Consensus 86 ~~iaR~~a~~~~-~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~lgi~--~~~l~ 162 (392)
T PRK12421 86 PQVARIDAHLLN-REGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNAGVP--ALHLD 162 (392)
T ss_pred HHHHHHHHhhcC-CCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEE
Confidence 999999887743 367999999999999998899999999999999999999999999999999999999997 79999
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
|||+++++++++.+|++++.++.++++++++ +..++.+.+.+++++.+.++.|..++.+.|
T Consensus 163 ig~~~i~~~il~~l~l~~~~~~~l~~~l~kk---~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g 223 (392)
T PRK12421 163 LGHVGIFRRLAELAGLSPEEEEELFDLLQRK---ALPELAEVCQNLGVGSDLRRMFYALARLNG 223 (392)
T ss_pred eCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc---CHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999888865 788888889889999999999999998886
No 8
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=100.00 E-value=1.5e-44 Score=339.20 Aligned_cols=210 Identities=34% Similarity=0.594 Sum_probs=187.9
Q ss_pred CCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHH
Q 022115 78 GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLV 157 (302)
Q Consensus 78 G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~ 157 (302)
||+|++|++++.++++++.++++|++|||++|+||+||+++++....|.. .+++|+|+|++|+.++||||+|+|+||++
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~-~~~~~~~~D~~G~~l~LR~D~T~~iaR~~ 79 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGED-SDNMYRFLDRSGRVLALRPDLTVPIARYV 79 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTT-GGCSEEEECTTSSEEEE-SSSHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccc-hhhhEEEEecCCcEeccCCCCcHHHHHHH
Confidence 89999999999999999999999999999999999999999998765554 55899999999999999999999999999
Q ss_pred HHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHH-HcCCCCCceEEEeCChHH
Q 022115 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK-RIGITASDVGFRISSRKV 236 (302)
Q Consensus 158 a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~-~lgl~~~~~~I~igh~~i 236 (302)
+++.. .+.|.|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++|+ .+|++ ++.|+|||++|
T Consensus 80 a~~~~-~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~~~l~~~--~~~i~i~h~~i 156 (311)
T PF13393_consen 80 ARNLN-LPRPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILDRELGLE--NFTIRINHTGI 156 (311)
T ss_dssp HHCCG-SSSSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTT--SEEEEEEEHHH
T ss_pred HHhcC-cCCCceEEEEcceeeccccCCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCC--CcEEEEcCchh
Confidence 99854 5789999999999999999999999999999999999999999999999999997 99987 89999999999
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 237 LQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 237 l~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
++++++.||++++++..++++++++ ++.++++.+.+.+++.+.++.|..++.+.|
T Consensus 157 ~~~il~~~gl~~~~~~~l~~~l~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g 211 (311)
T PF13393_consen 157 LDAILEHLGLPEDLRRELLEALDKK---DLSELKELLSELGLSSESLEILDKLPELEG 211 (311)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHT---HHHHHHHHHHHTTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcCCChhhhhhhhhheecc---ccccchhhhcccccchhhhhhhhccccccc
Confidence 9999999999999999999999866 788899999999999999999988886654
No 9
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=100.00 E-value=6.2e-44 Score=336.60 Aligned_cols=209 Identities=25% Similarity=0.409 Sum_probs=196.0
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHH
Q 022115 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (302)
Q Consensus 80 ~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~ 159 (302)
+|++|+++..++++++.++++|++|||++|+||+||+++++..+.| ...+++|+|+|++|+.++||||+|+|+||++++
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~ 79 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVST 79 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-cchhceEEEECCCCCEEeecCcCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999987756 678899999999999999999999999999998
Q ss_pred hCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHH
Q 022115 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (302)
Q Consensus 160 ~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~ 239 (302)
+....+.|.|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++|+.+|+. ++.|+|||++++++
T Consensus 80 ~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~lg~~--~~~i~l~~~~il~~ 157 (314)
T TIGR00443 80 RLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKALGLK--DFKIELGHVGLVRA 157 (314)
T ss_pred hcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCcHHHHHH
Confidence 7655568999999999999999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 240 VLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 240 il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++.|+++++++..++++++++ +...+++.+.+.+++.+.++.|..++.+.|
T Consensus 158 il~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g 209 (314)
T TIGR00443 158 LLEEAGLPEEAREALREALARK---DLVALEELLAELGLDPEVRERLLALPRLRG 209 (314)
T ss_pred HHHHcCCCHHHHHHHHHHHHhc---CHHHHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999876 566677788889999999999999998876
No 10
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=100.00 E-value=9.8e-41 Score=327.21 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=154.1
Q ss_pred ccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCC
Q 022115 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (302)
Q Consensus 72 ~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G~~l~LRpD 148 (302)
..++|+||+|++|+++..++++++.++++|++|||++|.||+||++++|..+.|+. ..++||+|.|.+|+.++||||
T Consensus 3 ~~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd 82 (430)
T CHL00201 3 KIQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPE 82 (430)
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCC
Confidence 46789999999999999999999999999999999999999999999998876754 348999999999999999999
Q ss_pred ChHHHHHHHHHhCC-CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCce
Q 022115 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (302)
Q Consensus 149 lT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~ 227 (302)
+|+|+||+++++.. ....|+|+||+|+|||+++|+.||.|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++ ++
T Consensus 83 ~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~lGl~--~~ 160 (430)
T CHL00201 83 GTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSIDARADTEVIHLAMQIFNELQVK--NL 160 (430)
T ss_pred CcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCCChhhHHHHHHHHHHHHHHcCCC--ce
Confidence 99999999888754 2357999999999999999999999999999999999999999999999999999999998 79
Q ss_pred EEEeCChHHHH
Q 022115 228 GFRISSRKVLQ 238 (302)
Q Consensus 228 ~I~igh~~il~ 238 (302)
+|+|||+++++
T Consensus 161 ~i~l~~~~~~~ 171 (430)
T CHL00201 161 ILDINSIGKLE 171 (430)
T ss_pred EEEECCCCchh
Confidence 99999998876
No 11
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=4.8e-40 Score=316.59 Aligned_cols=169 Identities=19% Similarity=0.324 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
...+++++.++++|++|||.+|.||+||++++|..++|++..+++|+|.|++|+.++||||+|+|+||.++++. .+.|
T Consensus 5 ~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~--~~~p 82 (373)
T PRK12295 5 SASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATA--GGEP 82 (373)
T ss_pred hhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcC--CCCC
Confidence 35679999999999999999999999999999988888888889999999999999999999999999988862 4679
Q ss_pred eEEEEEccccccCCCCCCCccceeEeeEEEecc-CChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCC
Q 022115 168 LKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV-PAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSI 246 (302)
Q Consensus 168 ~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~-~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl 246 (302)
.|+||+|+|||++ .|++|||+|+|+|+||. ++..+|+|||.++.++|+.+|+. +++|+|||+++++++++.+++
T Consensus 83 ~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~--~~~i~ig~~~il~~ll~~l~l 157 (373)
T PRK12295 83 ARYAYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPG--DLEVRLGDVGLFAALVDALGL 157 (373)
T ss_pred eEEEEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCC--ceEEEeCCHHHHHHHHHHcCC
Confidence 9999999999997 68999999999999997 45789999999999999999998 899999999999999999999
Q ss_pred ChhhHHHHHHHHHhhhc
Q 022115 247 PEHLFGKVCIIIDKIEK 263 (302)
Q Consensus 247 ~~~~~~~v~~~ldkl~k 263 (302)
+++++.+++++++++++
T Consensus 158 ~~~~~~~l~~~i~kk~~ 174 (373)
T PRK12295 158 PPGWKRRLLRHFGRPRS 174 (373)
T ss_pred CHHHHHHHHHHHhccch
Confidence 99999999999998754
No 12
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=100.00 E-value=7.4e-40 Score=317.43 Aligned_cols=209 Identities=34% Similarity=0.603 Sum_probs=189.2
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCCCh
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
++|+|++|++|.++..++++++.++++|++|||++|.||+||++++|..+.|+. ..+++|+|.|++|+.++||||+|
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 479999999999999999999999999999999999999999999998765543 34789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||+++++....+.|+|+||+|+|||+++++.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|++ ++.|+
T Consensus 81 ~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~lg~~--~~~i~ 158 (397)
T TIGR00442 81 APVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKELGIK--DFTLE 158 (397)
T ss_pred HHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHHcCCC--ceEEE
Confidence 9999999998665678999999999999999999999999999999999999999999999999999999997 79999
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHh-hhcCCHHHHHHHHHH-CCCCHHHHHHHHHHhc
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDK-IEKLPLDVIKNDLKS-AGMSEAAIEELLRVLS 291 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldk-l~k~~~~~v~~~L~~-~gls~~~~~~l~~l~~ 291 (302)
|||+++++++++ .+..+++++++ +++.+.+.+.+++.. .+++.+..+.+..++.
T Consensus 159 i~~~~i~~~~~~-------~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (397)
T TIGR00442 159 INSLGILEGRLE-------YREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLK 214 (397)
T ss_pred ecCcccHHHHHH-------HHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHh
Confidence 999999999997 47888999998 677778777777765 6788777777777654
No 13
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=100.00 E-value=8.7e-40 Score=304.04 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=151.7
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
.++++|+||+|++|+++..++++++.++++|++|||++|.||+||+++++.. ...+++|+|.|++|+.++||||+|
T Consensus 3 ~~~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~----~~~~~~y~~~D~~g~~l~LRpD~T 78 (281)
T PRK12293 3 LEHEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSI----ADEKELIRFSDEKNHQISLRADST 78 (281)
T ss_pred CCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcc----cchhceEEEECCCCCEEEECCcCC
Confidence 4688999999999999999999999999999999999999999999998842 346889999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||+++++....+.|+|+||+|+|||+++ |||+|+|+|+||.+++ +|+|.++.++|+.+|++ +.|+
T Consensus 79 ~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~~~---~Evi~la~~~l~~lgl~---~~i~ 146 (281)
T PRK12293 79 LDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEEDL---SEILNIAAEIFEELELE---PILQ 146 (281)
T ss_pred HHHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCCCH---HHHHHHHHHHHHHcCCC---CEEE
Confidence 9999999987654578999999999999872 8999999999999886 69999999999999996 4799
Q ss_pred eCChHHHHHHHHhCCCChhhH
Q 022115 231 ISSRKVLQEVLRCHSIPEHLF 251 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~ 251 (302)
|||+++++++++.++++++..
T Consensus 147 ig~~~i~~~~l~~~~~~~~~~ 167 (281)
T PRK12293 147 ISNIKIPKLVAEILGLDIEVF 167 (281)
T ss_pred ECCHHHHHHHHHHcCCCHHHH
Confidence 999999999999999998664
No 14
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=315.11 Aligned_cols=217 Identities=24% Similarity=0.399 Sum_probs=203.3
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
+++++|.|++|.+|.+++.+.+|++.+.+.|.+|||+.|+||++|++|++....|+....++|++.|+.|+.+|||||+|
T Consensus 1 ~~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 1 MTWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEeccccc
Confidence 46899999999999999999999999999999999999999999999999887788788999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||.+++.... .|.|+||.|+|||..+...|+..||+|+|+|++|.++..||+|||.++..+|+.+|+. ++.|.
T Consensus 81 ~pVaR~~~~~~~~--~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~~~gl~--~~~l~ 156 (390)
T COG3705 81 IPVARIHATLLAG--TPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDDSAAADAEVIALALAALKALGLA--DLKLE 156 (390)
T ss_pred HHHHHHHHHhcCC--CCceeeecchhhhcchhccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHHHcCCc--CeEEE
Confidence 9999999998764 8999999999999885556777899999999999999999999999999999999988 89999
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
|||.+|+++++..++++..++.++++++.++ +..+++......+++++..+.+..++.+.|
T Consensus 157 LG~~gif~all~~~~l~~~~~~~L~~a~~~k---~~~~~~~~~~~~~~~~~~~~~l~~l~~l~g 217 (390)
T COG3705 157 LGHAGIFRALLAAAGLPGGWRARLRRAFGDK---DLLGLELLVLAAPLSPELRGRLSELLALLG 217 (390)
T ss_pred eccHHHHHHHHHHcCCChhHHHHHHHHHhcc---chhhHHHHhhccCCChhhhHHHHHHHHHhC
Confidence 9999999999999999999999999998865 788888888888999999999999998887
No 15
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=100.00 E-value=4.4e-37 Score=282.63 Aligned_cols=191 Identities=34% Similarity=0.614 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
+++.++++++.++++|++|||++|.||++|+++++..+.|+...+++|+|.|++|+.++||||+|+|+||+++++....+
T Consensus 1 ~~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~ 80 (261)
T cd00773 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLP 80 (261)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCC
Confidence 46789999999999999999999999999999999776566677899999999999999999999999999999865456
Q ss_pred CCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCC
Q 022115 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHS 245 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~g 245 (302)
.|+|+||+|+|||+++++.|++|||+|+|+|+||.++..+|+|+|.++.++++.+|+. ++.|+|||+++++++++.++
T Consensus 81 ~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~~~~~daE~i~l~~~~l~~lg~~--~~~i~l~~~~i~~~l~~~~~ 158 (261)
T cd00773 81 LPLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSDSPLADAEVIALAVEILEALGLK--DFQIKINHRGILDGIAGLLE 158 (261)
T ss_pred CCeEEEEEcCEEecCCCCCCCccceEEeceeeeCCCChHHHHHHHHHHHHHHHHcCCC--ceEEEECCHHHHHHHhhccC
Confidence 8999999999999998889999999999999999999999999999999999999987 79999999999999999999
Q ss_pred CChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCC
Q 022115 246 IPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGM 278 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gl 278 (302)
++++....+...+++-.-..+..+.+.|+..|+
T Consensus 159 ~~~~~~~~l~~~l~~~~l~~l~~l~~~l~~~~~ 191 (261)
T cd00773 159 DREEYIERLIDKLDKEALAHLEKLLDYLEALGV 191 (261)
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC
Confidence 998877767666665212233444455555554
No 16
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.3e-37 Score=298.65 Aligned_cols=173 Identities=34% Similarity=0.631 Sum_probs=158.2
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCCCCeEeeC
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~~G~~l~LR 146 (302)
|+++++|+|++|++|.++..++++++.++++|++|||++|.||++|++++|..+.|+.. .+++|+|.|++|+.++||
T Consensus 1 ~~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LR 80 (412)
T PRK00037 1 MMKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLR 80 (412)
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEec
Confidence 67889999999999999999999999999999999999999999999999977656654 688999999999999999
Q ss_pred CCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCc
Q 022115 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD 226 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~ 226 (302)
||+|+|+||+++++.. .|+|+||+|+|||+++++.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|+. +
T Consensus 81 pd~T~~~ar~~~~~~~---~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~lg~~--~ 155 (412)
T PRK00037 81 PEGTAPVVRAVIEHKL---QPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKALGLK--G 155 (412)
T ss_pred CCCcHHHHHHHHhCCC---CCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHHcCCC--c
Confidence 9999999999998753 7999999999999999999999999999999999999889999999999999999997 5
Q ss_pred eEE----------EeCChHHHHHHHHhCCCCh
Q 022115 227 VGF----------RISSRKVLQEVLRCHSIPE 248 (302)
Q Consensus 227 ~~I----------~igh~~il~~il~~~gl~~ 248 (302)
+.+ .+||+++++++++. ++++
T Consensus 156 ~~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~ 186 (412)
T PRK00037 156 LKLLINSLGDFEIRANYRKALVGFLEK-GLDE 186 (412)
T ss_pred eeeeeccCCCHHHhHHHHHHHHHHHHh-Cchh
Confidence 666 56667788888887 6654
No 17
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.97 E-value=2.9e-30 Score=238.75 Aligned_cols=171 Identities=16% Similarity=0.093 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 84 p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
.++...++.+++.+.++|++|||++|.||+||++|++.. .++.....+++++ |.+|+.++||||+|+|+||+++++..
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~ 82 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPT 82 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCC
Confidence 356778999999999999999999999999999999743 3444555556555 55999999999999999999987532
Q ss_pred CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceE-EEeCChHHHHHHH
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG-FRISSRKVLQEVL 241 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~-I~igh~~il~~il 241 (302)
.|.|+||+|+|||+++ +++|+|+|+||.+ ..+|+|++.++.+++..+|.. ++. |.|||++++++++
T Consensus 83 ---~~~Rl~Y~g~VfR~~~-------~~~Q~GvEliG~~-~~a~~e~l~la~~~l~~~g~~--~~~~i~lGh~~~~~~l~ 149 (272)
T PRK12294 83 ---AATKVAYAGLIIRNNE-------AAVQVGIENYAPS-LANVQQSFKLFIQFIQQQLRD--NVHFVVLGHYQLLDALL 149 (272)
T ss_pred ---CCceEEEeccEeccCC-------CcceeceEEECCC-chhHHHHHHHHHHHHHHhCCC--CCcEEEeccHHHHHHHH
Confidence 3669999999999873 4899999999944 789999999999999999776 443 8999999999999
Q ss_pred HhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHH
Q 022115 242 RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKS 275 (302)
Q Consensus 242 ~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~ 275 (302)
+. ++.+.++++++.++ |..++++.+.+
T Consensus 150 ~~----~~~~~~l~~~l~~K---n~~~l~~~l~~ 176 (272)
T PRK12294 150 DK----SLQTPDILSMIEER---NLSGLVTYLST 176 (272)
T ss_pred hC----HHHHHHHHHHHHhc---CHHHHHHHHhh
Confidence 84 45677788887754 78888887753
No 18
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.96 E-value=1.2e-28 Score=252.46 Aligned_cols=190 Identities=24% Similarity=0.362 Sum_probs=159.0
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
.+.|+|++||+|.++.++++|++.++++|+++||.+|.||+||+.++|... |+ ...++||.|.|++|+.++|||+.|
T Consensus 256 ~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~-g~~~~~~~~my~~~d~~~~~~~LRP~~~ 334 (638)
T PRK00413 256 QEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETS-GHWDHYRENMFPTTESDGEEYALKPMNC 334 (638)
T ss_pred cCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhc-CChhhhhhccceeecCCCcEEEEecCCc
Confidence 456799999999999999999999999999999999999999999999874 64 357899999999999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCChh-HH-HHHHHHHHHHHHHcCCC
Q 022115 151 PSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGIT 223 (302)
Q Consensus 151 ~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~~~-aD-aEvi~l~~eil~~lgl~ 223 (302)
++++|+++.+... .++|+|+||+|+|||+|+++ .| |.|||+|+|+|+||.++.. +| +|+|.++.++|+.||++
T Consensus 335 ~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e~~eii~l~~~~~~~lg~~ 414 (638)
T PRK00413 335 PGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEEVKKVIDLILDVYKDFGFE 414 (638)
T ss_pred HHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 9999999987654 46899999999999999886 35 8999999999999987765 46 99999999999999997
Q ss_pred CCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHH
Q 022115 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAA 282 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~ 282 (302)
++.+++||+ . . ..+|.++. + ++. .+.+++.|.+.|++.+.
T Consensus 415 --~~~i~l~~r-~-~---~~~g~~~~-~-------~~~----~~~l~~~l~~~g~~~~~ 454 (638)
T PRK00413 415 --DYEVKLSTR-P-E---KRIGSDEM-W-------DKA----EAALKEALDELGLDYEI 454 (638)
T ss_pred --eEEEEEecC-C-c---ccCCCHHH-H-------HHH----HHHHHHHHHHcCCCcee
Confidence 799999998 3 2 24555542 1 111 34456666666655443
No 19
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.8e-27 Score=241.22 Aligned_cols=160 Identities=19% Similarity=0.295 Sum_probs=145.7
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
..++|++||+|.+++++++|++.++++|+++||.+|.||+|++.++|.. +|+ ...++||.|.|.+|+.++|||+.|+
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~-sg~~~~~~~~my~~~d~~~~~~~LRP~~~~ 271 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKT-SGHLDNYKENMFPPMEIDEEEYYLKPMNCP 271 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhh-cCCcccchhhcccccccCCceEEEecCCCH
Confidence 4599999999999999999999999999999999999999999999987 465 4568999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEEccccccCCCC----CCCccceeEeeEEEeccCChhHH--HHHHHHHHHHHHHcCCCC
Q 022115 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT----RGRRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGITA 224 (302)
Q Consensus 152 ~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~----~gr~rEf~Q~g~EiiG~~~~~aD--aEvi~l~~eil~~lgl~~ 224 (302)
+++|+++.+... .++|+|+||+|+|||+|.++ .+|.|||+|+|+|+||.++..+| +|++.++.++++.||++
T Consensus 272 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~- 350 (575)
T PRK12305 272 GHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFK- 350 (575)
T ss_pred HHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 999999986543 36899999999999999774 34899999999999998777777 99999999999999997
Q ss_pred CceEEEeCChHH
Q 022115 225 SDVGFRISSRKV 236 (302)
Q Consensus 225 ~~~~I~igh~~i 236 (302)
++.+.+|++.+
T Consensus 351 -~~~i~l~~r~~ 361 (575)
T PRK12305 351 -DYYLELSTREP 361 (575)
T ss_pred -eEEEEEeCCCh
Confidence 79999999877
No 20
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.93 E-value=5e-26 Score=209.06 Aligned_cols=166 Identities=20% Similarity=0.301 Sum_probs=142.9
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
.+.++|+.||+|.+++++++|.+.++++++++||++|.||++++.++|..+ |+ ...++||++.|.+|+.++|||+.+
T Consensus 17 ~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~s-g~~~~~~~emy~~~d~~~~~l~LrPt~e 95 (255)
T cd00779 17 RQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKES-GRWDAYGPELLRLKDRHGKEFLLGPTHE 95 (255)
T ss_pred ccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCccccCcccEEEecCCCCeEEEecCCc
Confidence 458999999999999999999999999999999999999999999999764 65 356899999999999999999955
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHH---HHHHHHHHHHHHcCCC
Q 022115 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGIT 223 (302)
Q Consensus 151 ~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDa---Evi~l~~eil~~lgl~ 223 (302)
++++-+++.... ..++|+|+||+|+|||+| +++.| |.|||+|++++++|.+...+|+ |++.++.++|+.||++
T Consensus 96 ~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~ 175 (255)
T cd00779 96 EVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLP 175 (255)
T ss_pred HHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 554443333211 136899999999999999 88999 9999999999999998878888 7888899999999995
Q ss_pred CCceEEEeCChHHHHHHHH
Q 022115 224 ASDVGFRISSRKVLQEVLR 242 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il~ 242 (302)
+.+..++.+.+.+...
T Consensus 176 ---~~~~~~~~~~~gg~~s 191 (255)
T cd00779 176 ---FVKVEADSGAIGGSLS 191 (255)
T ss_pred ---EEEEEecCCCCCCccc
Confidence 8888888888877443
No 21
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=99.93 E-value=1.4e-25 Score=225.07 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=163.0
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
..++|+++|+|.++.+++.|.+.+++.++++||++|.||.++..++|.. +|+. ..++||.+ |.+|+.++|||+.|+
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp 232 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVF-NMEGDEYGVKPMNCP 232 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhccee-eccCceEEeccCCCH
Confidence 5789999999999999999999999999999999999999999999976 6887 77899988 888999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEEccccccCCCCC----CCccceeEeeEEEeccCChh-HHH-HHHHHHHHHHHHcCCCC
Q 022115 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAVT-AEA-ELISSIITFFKRIGITA 224 (302)
Q Consensus 152 ~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~~----gr~rEf~Q~g~EiiG~~~~~-aDa-Evi~l~~eil~~lgl~~ 224 (302)
+++++++.+... .++|+|+|++|+|||+|.++. +|.|||+|++++||+.++.. +|+ |++.++.++++.+|++.
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~ 312 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKD 312 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999987654 378999999999999998875 79999999999999987654 787 99999999999999964
Q ss_pred CceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHH
Q 022115 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (302)
Q Consensus 225 ~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l 289 (302)
.++.+.++++. .+.+|.++. .++. .+.+++.|.++|++.+..+....+
T Consensus 313 ~~~~i~ls~Rp-----e~~~G~~~~--------wdka----~~~l~~~L~~~gl~~~~~~g~gaf 360 (545)
T PRK14799 313 DDIKPYLSTRP-----DESIGSDEL--------WEKA----TNALISALQESGLKFGIKEKEGAF 360 (545)
T ss_pred ccEEEEEEcCh-----hhhcCCHHH--------HHHH----HHHHHHHHHHcCCCeEEecceecc
Confidence 46999999986 344554432 1211 144556666666665544443333
No 22
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.93 E-value=1.2e-24 Score=204.17 Aligned_cols=181 Identities=21% Similarity=0.335 Sum_probs=147.5
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
...++|++||+|.++++++.|++.++++++++||++|.||++++.++|.. +|+. ..++||++ +.+|+.++|||+.|
T Consensus 16 ~~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sg~~~~~~~~my~~-~~~~~~l~LRP~~~ 93 (298)
T cd00771 16 DEAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWET-SGHWDHYRENMFPF-EEEDEEYGLKPMNC 93 (298)
T ss_pred CCCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhh-CCCccccccCceEe-ccCCceEEEcccCC
Confidence 34799999999999999999999999999999999999999999999986 3642 46889999 55778999999999
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEEccccccCCCCC----CCccceeEeeEEEeccCCh-hHHH-HHHHHHHHHHHHcCCC
Q 022115 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR----GRRREHYQWNMDIIGVPAV-TAEA-ELISSIITFFKRIGIT 223 (302)
Q Consensus 151 ~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~----gr~rEf~Q~g~EiiG~~~~-~aDa-Evi~l~~eil~~lgl~ 223 (302)
++++|+++.... ..++|+|+||+|+|||+|.++. +|.|||+|.|+++||.++. .+|. |++.++.++++.||+.
T Consensus 94 ~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~ 173 (298)
T cd00771 94 PGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFF 173 (298)
T ss_pred HHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987543 3578999999999999996642 5889999999999987543 3443 7999999999999997
Q ss_pred CCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHH
Q 022115 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIID 259 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ld 259 (302)
++.+.++++. +.......+.......+..+++
T Consensus 174 --~~~i~l~~~~--~~~~~d~e~W~~a~~~l~e~l~ 205 (298)
T cd00771 174 --DYKVELSTRP--EKFIGSDEVWEKAEAALREALE 205 (298)
T ss_pred --cEEEEEEcCh--hHhcCCHHHHHHHHHHHHHHHH
Confidence 7999999997 4433333333333444444444
No 23
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.92 E-value=7.9e-25 Score=196.92 Aligned_cols=149 Identities=24% Similarity=0.406 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhh-ccccccccEEEeeCC----CCeEeeCCCChHHHHHHHHHhC
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA-GEEIRDQLYCFEDRG----NRRVALRPELTPSLARLVIQKG 161 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~-g~~~~~~~~~f~D~~----G~~l~LRpDlT~~iaR~~a~~~ 161 (302)
+.++++|++.+.+.|.++||++|.||++++.++|.... ++...+++|.+.|.+ |+.++||||.|++++|+++...
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 57899999999999999999999999999999997542 345678999999988 8999999999999999999875
Q ss_pred CC-CCCCeEEEEEccccccCCCC---CCCccceeEeeEEEeccC--ChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChH
Q 022115 162 KS-VSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVP--AVTAEAELISSIITFFKRIGITASDVGFRISSRK 235 (302)
Q Consensus 162 ~~-~~~P~K~~yig~VfR~e~~~---~gr~rEf~Q~g~EiiG~~--~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~ 235 (302)
.. .++|+|+||+|+|||+|.++ .+|.|||+|.|++++|.+ +..+++|++.++.++|+.||++ +.+.+++.+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~---~~i~~~~~~ 158 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLP---VRVVVADDP 158 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc---EEEEEccCh
Confidence 54 57899999999999999766 568999999999999998 6788999999999999999984 999999998
Q ss_pred HHH
Q 022115 236 VLQ 238 (302)
Q Consensus 236 il~ 238 (302)
.+.
T Consensus 159 ~~~ 161 (235)
T cd00670 159 FFG 161 (235)
T ss_pred hhc
Confidence 654
No 24
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.92 E-value=1.8e-24 Score=218.93 Aligned_cols=165 Identities=21% Similarity=0.281 Sum_probs=144.4
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
.+.|+|++||+|.+++++++|++.+++.|+++||++|.||.|++.++|.. +|+ ...++||+|.|++|+.++|||+.+
T Consensus 33 ~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~-sg~~~~~~~emf~~~d~~~~~l~LrPt~e 111 (565)
T PRK09194 33 RKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQE-SGRWEEYGPELLRLKDRHGRDFVLGPTHE 111 (565)
T ss_pred cccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhh-cCCccccchhceEEecCCCCEEEECCCCh
Confidence 56889999999999999999999999999999999999999999999965 353 245789999999999999999877
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHH---HHHHHHHHHHHHcCCC
Q 022115 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGIT 223 (302)
Q Consensus 151 ~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDa---Evi~l~~eil~~lgl~ 223 (302)
.+++.++..... ..++|+|+||+++|||+| +|+.| |.|||+|.|+++||.+...+|+ +++.++.++|++||++
T Consensus 112 ~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~ 191 (565)
T PRK09194 112 EVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLD 191 (565)
T ss_pred HHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 777666655433 246899999999999999 99999 9999999999999998888887 5667789999999994
Q ss_pred CCceEEEeCChHHHHHHH
Q 022115 224 ASDVGFRISSRKVLQEVL 241 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il 241 (302)
|.+.++|++.+.+..
T Consensus 192 ---~~~~~~~~g~~gg~~ 206 (565)
T PRK09194 192 ---FRAVEADSGAIGGSA 206 (565)
T ss_pred ---cEEEEcccccCCCce
Confidence 999999988876554
No 25
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=99.91 E-value=4.8e-24 Score=215.63 Aligned_cols=160 Identities=22% Similarity=0.343 Sum_probs=139.4
Q ss_pred cccCC--CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeC
Q 022115 71 IDVNP--PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 71 ~~~~~--p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LR 146 (302)
+.+.+ ++|+.||+|.++.+++.|++.+++.+.++||.+|.||+|++.++|.+. |+ ...++||+|.|++|+.++||
T Consensus 182 ~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s-g~~~~~~~emy~~~d~~~~~~~Lr 260 (563)
T TIGR00418 182 FSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEIS-GHWDNYKERMFPFTELDNREFMLK 260 (563)
T ss_pred cccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CCcccchhhcceeccCCCceEEEe
Confidence 44443 899999999999999999999999999999999999999999999874 53 35788999999999999999
Q ss_pred CCChHHHHHHHHHhCCC-CCCCeEEEEEccccccCCCC--C--CCccceeEeeEEEeccCChhHHHH---HHHHHHHHHH
Q 022115 147 PELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--R--GRRREHYQWNMDIIGVPAVTAEAE---LISSIITFFK 218 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~--~--gr~rEf~Q~g~EiiG~~~~~aDaE---vi~l~~eil~ 218 (302)
|+.|++++|.++.+... ..+|+|+||+|+|||+|..+ . +|.|||+|.|+|+||. ...+++| ++.++.++++
T Consensus 261 P~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~-~~~~~~e~~~~i~~~~~~~~ 339 (563)
T TIGR00418 261 PMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT-EDQIKEEFKNQFRLIQKVYS 339 (563)
T ss_pred cCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987643 35799999999999999432 1 3899999999999998 4556666 9999999999
Q ss_pred HcCCCCCceEEEeCCh
Q 022115 219 RIGITASDVGFRISSR 234 (302)
Q Consensus 219 ~lgl~~~~~~I~igh~ 234 (302)
.||++ .+.+++|..
T Consensus 340 ~lgl~--~~~~~l~~~ 353 (563)
T TIGR00418 340 DFGFS--FDKYELSTR 353 (563)
T ss_pred HcCCC--eEEEEEeCC
Confidence 99998 678888853
No 26
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.90 E-value=6.8e-23 Score=189.25 Aligned_cols=163 Identities=21% Similarity=0.284 Sum_probs=139.9
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCC----C
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGN----R 141 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G----~ 141 (302)
.+++..+|+|+.+|+|.+++++++|++.+++.++++||++|.||.+++.++|. +.|+. ..+++|.+.|.+| +
T Consensus 14 g~~~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~ 92 (264)
T cd00772 14 ELADQGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEE 92 (264)
T ss_pred CCccccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCc
Confidence 34666779999999999999999999999999999999999999999999985 45654 2368999999887 8
Q ss_pred eEeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHHHH---HHH
Q 022115 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELIS---SII 214 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEvi~---l~~ 214 (302)
.++|||+.|++++++++.... ..++|+|+||+++|||+| ++..| |.|||+|.++++++.+...+++|+.. .+.
T Consensus 93 ~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~ 172 (264)
T cd00772 93 DFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYA 172 (264)
T ss_pred eEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887643 357899999999999999 77788 99999999999999887778887755 559
Q ss_pred HHHHHcC-CCCCceEEEeCChH
Q 022115 215 TFFKRIG-ITASDVGFRISSRK 235 (302)
Q Consensus 215 eil~~lg-l~~~~~~I~igh~~ 235 (302)
++++.|| ++ +.+.....+
T Consensus 173 ~i~~~l~~lp---~~~~~~~~~ 191 (264)
T cd00772 173 EIARDLAAID---FIEGEADEG 191 (264)
T ss_pred HHHHhcCCcc---EEEEEcCCC
Confidence 9999999 64 666665543
No 27
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=3.3e-23 Score=216.53 Aligned_cols=171 Identities=19% Similarity=0.311 Sum_probs=150.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHH
Q 022115 80 RDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQ 159 (302)
Q Consensus 80 ~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~ 159 (302)
.++.+....+++.+.+.+.++|++||+.+++||.+.....- .-...+.+.++|++|-.|.|++|++.||||++++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~-----~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~ 999 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNAC-----AYFSRKAVELLDHSGDVVELPYDLRLPFARYVSR 999 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCcccccccc-----chhccceeeeecCCCCEEEeeccccchHHHHhhh
Confidence 56777788899999999999999999999999966543211 1125789999999999999999999999999999
Q ss_pred hCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHH
Q 022115 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (302)
Q Consensus 160 ~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~ 239 (302)
|.. ..+|+|.+++|||... .. +|+|++||+|||||......|||+|.+++|++.. -++..++.|.+||+.++++
T Consensus 1000 N~~---~~~Kry~i~rVyr~~~-~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~-~l~~~n~~i~lnH~~LL~A 1073 (1351)
T KOG1035|consen 1000 NSV---LSFKRYCISRVYRPAI-HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE-ILHEGNCDIHLNHADLLEA 1073 (1351)
T ss_pred chH---HHHHHhhhheeecccc-cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH-HhccCceeEEeChHHHHHH
Confidence 864 5899999999999886 44 9999999999999997779999999999999987 4555689999999999999
Q ss_pred HHHhCCCChhhHHHHHHHHHhh
Q 022115 240 VLRCHSIPEHLFGKVCIIIDKI 261 (302)
Q Consensus 240 il~~~gl~~~~~~~v~~~ldkl 261 (302)
++..||||++++.+|..++.-.
T Consensus 1074 i~~~~~i~~~~r~~v~~~l~~~ 1095 (1351)
T KOG1035|consen 1074 ILSHCGIPKDQRRKVAELLSDM 1095 (1351)
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998755
No 28
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.90 E-value=5e-23 Score=208.03 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=141.2
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCC--
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPE-- 148 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpD-- 148 (302)
.+.|+|+++|+|.+++++++|++.+++.+.++||++|.+|.|++.++|..+ |. ...++||+|.|++|+.++|||+
T Consensus 33 ~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~s-g~~~~~~~emf~~~dr~~~~l~LrPT~E 111 (568)
T TIGR00409 33 RRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQES-GRWDTYGPELLRLKDRKGREFVLGPTHE 111 (568)
T ss_pred cccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhc-CCCCccchhcEEEecCCCCEEEEcCCCc
Confidence 568899999999999999999999999999999999999999999999763 43 2457899999999999999997
Q ss_pred --ChHHHHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHHH---HHHHHHHHHc
Q 022115 149 --LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELI---SSIITFFKRI 220 (302)
Q Consensus 149 --lT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEvi---~l~~eil~~l 220 (302)
+|..+++.+..+ .++|+|+||+++|||+| +|+.| |.|||+|.++++||.+...+|+|+. .++.++|++|
T Consensus 112 e~~t~~~~~~i~sy---r~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 112 EVITDLARNEIKSY---KQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred HHHHHHHHHHHhhc---cccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHHHHHHHHHHHHHHHh
Confidence 887777777754 35899999999999999 99999 9999999999999999888888877 4569999999
Q ss_pred CCCCCceEEEeCChHHHHHH
Q 022115 221 GITASDVGFRISSRKVLQEV 240 (302)
Q Consensus 221 gl~~~~~~I~igh~~il~~i 240 (302)
||+ +.+..++++.+.+-
T Consensus 189 gL~---~~~v~~~~g~~gg~ 205 (568)
T TIGR00409 189 GLD---FRPVQADSGAIGGS 205 (568)
T ss_pred CCc---ceEEEeccccCCCc
Confidence 995 87887777665433
No 29
>PLN02908 threonyl-tRNA synthetase
Probab=99.90 E-value=3.1e-23 Score=214.04 Aligned_cols=183 Identities=19% Similarity=0.266 Sum_probs=162.7
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
+.++|+++|+|.++++++.|.+.+++.++++||.+|.||.+++.++|.. +|+. ..++||.| |.+++.++|||+.|+
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~ 385 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVF-EIEKQEFGLKPMNCP 385 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEE-ecCCeeEEEcCCCcH
Confidence 4678999999999999999999999999999999999999999999985 6876 67899998 778899999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEEccccccCCC----CCCCccceeEeeEEEecc-CChhHHH-HHHHHHHHHHHHcCCCC
Q 022115 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERM----TRGRRREHYQWNMDIIGV-PAVTAEA-ELISSIITFFKRIGITA 224 (302)
Q Consensus 152 ~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~----~~gr~rEf~Q~g~EiiG~-~~~~aDa-Evi~l~~eil~~lgl~~ 224 (302)
+++++++..... .++|+|+|++|+|||+|.+ +.+|.|||+|.++++|+. +...+|+ |++.++.++++.||++
T Consensus 386 ~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~- 464 (686)
T PLN02908 386 GHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFT- 464 (686)
T ss_pred HHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCc-
Confidence 999999987654 3789999999999999976 445999999999999998 5667888 8999999999999995
Q ss_pred CceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhc
Q 022115 225 SDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEK 263 (302)
Q Consensus 225 ~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k 263 (302)
+.+.++++. +..+..+++.+.....+.++||+.++
T Consensus 465 --~~~~ls~r~--~~~~g~~~~w~~ae~~l~~~ld~~~~ 499 (686)
T PLN02908 465 --YELKLSTRP--EKYLGDLETWDKAEAALTEALNAFGK 499 (686)
T ss_pred --EEEEEeCCc--cccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999986 77777777777777789999998753
No 30
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=3.1e-22 Score=205.37 Aligned_cols=155 Identities=26% Similarity=0.420 Sum_probs=137.0
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
+..+|++||+|.++.+++.|++.+++.+.++||.+|.||.|++.++|... |+ ...++|| +.|.+|+.++|||+.|+
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~s-G~~~~~~~emy-~~d~~~~~~~LrP~~~~ 338 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERS-GHWDHYKDNMY-FSEVDNKSFALKPMNCP 338 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhc-CChhhhhhhcC-eecCCCcEEEEccCCCH
Confidence 35889999999999999999999999999999999999999999999864 65 3578999 88999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEEccccccCCCCC--C--CccceeEeeEEEeccCChhHHHH---HHHHHHHHHHHcCCC
Q 022115 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTR--G--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (302)
Q Consensus 152 ~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~~--g--r~rEf~Q~g~EiiG~~~~~aDaE---vi~l~~eil~~lgl~ 223 (302)
+++|++...... .++|+|+||+|+|||+|+++. | |.|||+|.|+++||.++. +++| ++.++.++++.||++
T Consensus 339 ~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~-~~~e~~~~~~~~~~i~~~lgl~ 417 (639)
T PRK12444 339 GHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQ-IEDEIKSVMAQIDYVYKTFGFE 417 (639)
T ss_pred HHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHH-HHHHHHHHHHHHHHHHHHcCCc
Confidence 999999665443 468999999999999998754 6 999999999999987544 5555 899999999999994
Q ss_pred CCceEEEeCCh
Q 022115 224 ASDVGFRISSR 234 (302)
Q Consensus 224 ~~~~~I~igh~ 234 (302)
+.+.++++
T Consensus 418 ---~~~~~~~r 425 (639)
T PRK12444 418 ---YEVELSTR 425 (639)
T ss_pred ---EEEEEECC
Confidence 88888775
No 31
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.85 E-value=2.8e-21 Score=177.53 Aligned_cols=149 Identities=19% Similarity=0.261 Sum_probs=124.8
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcC--CeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG--FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~G--y~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
+..|+|++||+|.+++++++|.+.+++.|.++| |.+|+||++++.++|..+.|.. |.+++.++||||+|
T Consensus 18 y~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~---------d~~~~~~~Lrp~~~ 88 (254)
T cd00774 18 YGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPV---------ESGGNLGYLRPETA 88 (254)
T ss_pred ccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeeccc---------CCCCcccccCCccc
Confidence 356899999999999999999999999999996 9999999999997765443432 55678999999999
Q ss_pred ----HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCC---CCccceeEeeEEEeccCChh--HHHHHHHHHHHHHHHcC
Q 022115 151 ----PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIG 221 (302)
Q Consensus 151 ----~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~---gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lg 221 (302)
++++|.+..+. .++|+|+||+|+|||+|.+++ +|.|||+|+++|+||.++.. .-..++....+++.++|
T Consensus 89 ~~~~~~~~~~~~~~~--~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G 166 (254)
T cd00774 89 QGIFVNFKNLLEFNR--RKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFA 166 (254)
T ss_pred chHHHHHHHHHHHhC--CCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcC
Confidence 79999988765 368999999999999997665 69999999999999976532 23468999999999999
Q ss_pred CCCCceEEEeC
Q 022115 222 ITASDVGFRIS 232 (302)
Q Consensus 222 l~~~~~~I~ig 232 (302)
+...++.+...
T Consensus 167 ~~~~~~r~~~~ 177 (254)
T cd00774 167 QSPENLRLTDH 177 (254)
T ss_pred CCccceEEEec
Confidence 87555655544
No 32
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=99.81 E-value=1.4e-19 Score=178.20 Aligned_cols=148 Identities=18% Similarity=0.303 Sum_probs=132.0
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCC---
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRP--- 147 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRp--- 147 (302)
.+.++|+.+|+|.+++++++|++.+++.+.++||++|.||.+++.++|..+ |+ ...++||++.|.+++.++|||
T Consensus 33 ~~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~s-g~~~~~~~emf~~~d~~~~~~~L~Pt~e 111 (439)
T PRK12325 33 RQQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRES-GRYDAYGKEMLRIKDRHDREMLYGPTNE 111 (439)
T ss_pred cccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhc-CCccccchhheEEecCCCCEEEEcCCCc
Confidence 346999999999999999999999999999999999999999999999654 66 467899999999999999999
Q ss_pred CChHHHHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCCh---hHHHHHHHHHHHHHHHcC
Q 022115 148 ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAV---TAEAELISSIITFFKRIG 221 (302)
Q Consensus 148 DlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~---~aDaEvi~l~~eil~~lg 221 (302)
+.+.+++|....+. .++|+|+||+|+|||+| ++..| |.|||+|-++.+++.+.. ....+++.++.++|+.||
T Consensus 112 ~~~~~~~~~~~~sy--rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lg 189 (439)
T PRK12325 112 EMITDIFRSYVKSY--KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLG 189 (439)
T ss_pred HHHHHHHHHHhhhc--hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67888888888765 35899999999999999 77778 999999999999987543 356789999999999999
Q ss_pred CC
Q 022115 222 IT 223 (302)
Q Consensus 222 l~ 223 (302)
++
T Consensus 190 l~ 191 (439)
T PRK12325 190 LK 191 (439)
T ss_pred Cc
Confidence 96
No 33
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.81 E-value=2.9e-19 Score=154.58 Aligned_cols=146 Identities=32% Similarity=0.479 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCC--
Q 022115 89 LRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-- 163 (302)
Q Consensus 89 ~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~-- 163 (302)
++++|.+.+.+.+. ++||++|.+|+|.+.+++.. +|+. ..+++|.+.|.+++.++|||+.+++++.++......
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~ 79 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSY 79 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccccccccCCeeeeeecccccEEeccccccceeeeecceeeecc
Confidence 47889999999999 99999999999999999987 4653 457799999999999999999999999999886543
Q ss_pred CCCCeEEEEEccccccC-CCC--CCCccceeEeeEEEeccC--ChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHH
Q 022115 164 VSLPLKWFAVGQCWRYE-RMT--RGRRREHYQWNMDIIGVP--AVTAEAELISSIITFFKRIGITASDVGFRISSRKVL 237 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e-~~~--~gr~rEf~Q~g~EiiG~~--~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il 237 (302)
..+|+|+|++|+|||+| ++. ..|.|||+|.+++++|.+ ......+++.++.++++.||+. ++.+..++++-+
T Consensus 80 ~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~--~~~~~~~~~~~~ 156 (173)
T PF00587_consen 80 RDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLE--PYRIVLSSSGEL 156 (173)
T ss_dssp GGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSG--CEEEEEEETCTS
T ss_pred ccCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCc--eEEEEEcCCCcc
Confidence 35899999999999999 555 448999999999999998 3456779999999999999994 699998887654
No 34
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.81 E-value=8.2e-19 Score=169.93 Aligned_cols=134 Identities=21% Similarity=0.336 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHH---hhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL---FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~---~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
....++++.++++|..+||+||.||+|+..+. +....+..+.+++|.+. +.++||||+|++++|+++.+....
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~e----e~lvLRPdLTPsLaR~La~N~~~l 315 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVD----KNFCLRPMLAPNLYNYLRKLDRAL 315 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEec----CceEecccCHHHHHHHHHHhhhhc
Confidence 46799999999999999999999999964444 33222334566888873 359999999999999998765445
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+.|.|+||+|+|||++.++.||.+||+|+|++++|.+...+|++ .++.++|+.||+. +.+.
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~atfaDle--alL~e~Lr~LGId---feit 376 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSGCTRENLE--AIIKDFLDHLEID---FEIV 376 (453)
T ss_pred cCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCCCCHHHHH--HHHHHHHHHCCCc---eEEe
Confidence 68999999999999999899999999999999999988887666 6999999999984 6554
No 35
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.79 E-value=5e-19 Score=163.16 Aligned_cols=151 Identities=23% Similarity=0.294 Sum_probs=123.2
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCC----eE
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----RV 143 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~----~l 143 (302)
+++.++++|+.+|+|.+++++++|++.+++.+.++||++|.||.+++.+++..++|+. ..++||++.|.+++ .+
T Consensus 15 ~~d~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~ 94 (261)
T cd00778 15 LIDYGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPL 94 (261)
T ss_pred CcccCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcE
Confidence 4556678899999999999999999999999999999999999999999986544543 36789999997654 79
Q ss_pred eeCCC----ChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCC---CCCccceeEeeEEEeccCChhHHH---HHHHHH
Q 022115 144 ALRPE----LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVPAVTAEA---ELISSI 213 (302)
Q Consensus 144 ~LRpD----lT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~---~gr~rEf~Q~g~EiiG~~~~~aDa---Evi~l~ 213 (302)
+|||+ +|..+++.+.++ .++|+|+|++|+|||+|.++ .+|.|||+|.++..+-.+...++. +++.++
T Consensus 95 ~L~Pt~e~~~~~~~~~~i~s~---r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~ 171 (261)
T cd00778 95 ALRPTSETAIYPMFSKWIRSY---RDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLY 171 (261)
T ss_pred EEcCCCCHHHHHHHHhhccch---hhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHH
Confidence 99999 555566665543 35899999999999999654 348999999999876554333333 568899
Q ss_pred HHHHHHc-CCC
Q 022115 214 ITFFKRI-GIT 223 (302)
Q Consensus 214 ~eil~~l-gl~ 223 (302)
.++++.| |++
T Consensus 172 ~~i~~~llgl~ 182 (261)
T cd00778 172 KEFYEDLLAIP 182 (261)
T ss_pred HHHHHHhCCCe
Confidence 9999999 986
No 36
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=99.74 E-value=5.1e-18 Score=168.53 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=129.9
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCC----CC
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG----NR 141 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~----G~ 141 (302)
.++++.+++|+++|+|.++.+++.|++.+++.++++||++|.+|+|++.++|... |+. ..++||.+.|.+ ++
T Consensus 20 ~li~~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~-~~h~~~f~~e~f~v~~~g~~~~~e 98 (472)
T TIGR00408 20 EIIDYYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKE-KDHIKGFEPEVYWITHGGLSKLDE 98 (472)
T ss_pred CCccccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhh-cchhhhcchhcEEEecCCCCccCC
Confidence 4566788999999999999999999999999999999999999999999999764 433 367899999977 48
Q ss_pred eEeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccCCCC---CCCccceeEeeEEEeccCChhHHH---HHHHHHH
Q 022115 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT---RGRRREHYQWNMDIIGVPAVTAEA---ELISSII 214 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~---~gr~rEf~Q~g~EiiG~~~~~aDa---Evi~l~~ 214 (302)
.++|||+.|++++.+++.... ..++|+|+|++++|||+|.++ .+|.|||+|.+++.+-.+...++. +++.+..
T Consensus 99 ~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~ 178 (472)
T TIGR00408 99 PLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYK 178 (472)
T ss_pred cEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHH
Confidence 999999999999987776543 357899999999999999653 348999999999866655444443 4688899
Q ss_pred HHHH-HcCCC
Q 022115 215 TFFK-RIGIT 223 (302)
Q Consensus 215 eil~-~lgl~ 223 (302)
++++ .||++
T Consensus 179 ~i~~~~lglp 188 (472)
T TIGR00408 179 EFIENSLAIP 188 (472)
T ss_pred HHHHhccCCe
Confidence 9997 89985
No 37
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=99.73 E-value=9.6e-18 Score=167.28 Aligned_cols=149 Identities=23% Similarity=0.410 Sum_probs=123.3
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-------------------HHhhhhhcc--
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-------------------ALFIRKAGE-- 126 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-------------------d~~~~~~g~-- 126 (302)
++.+++..|. +|++|.+...+.++.+.++++|..+||++|.+|.+|.. |+|..+.+.
T Consensus 215 ~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~ 292 (489)
T PRK04172 215 FRPYNVKAPP--PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIG 292 (489)
T ss_pred CccceeCCCC--CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccc
Confidence 3445565554 99999999999999999999999999999999999953 554333221
Q ss_pred cc--------------------ccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCC
Q 022115 127 EI--------------------RDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGR 186 (302)
Q Consensus 127 ~~--------------------~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr 186 (302)
++ ..-.|.|.|+.++.++|||++|++++|+++.+. +.|+|+|++|+|||+++++.+|
T Consensus 293 ~~~~~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~---~~p~rlFeiGrVFR~e~~d~~~ 369 (489)
T PRK04172 293 DLPEELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP---EPPQKYFSIGRVFRPDTIDATH 369 (489)
T ss_pred cCcHHHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC---CCCeEEEEecceEcCCCCCccc
Confidence 00 011577878888999999999999999999864 3699999999999999888888
Q ss_pred ccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 187 RREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 187 ~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
.+||+|++++++|.+. ..+|++.++.+++..+|+.
T Consensus 370 l~Ef~ql~~~i~G~~~--~f~elkg~l~~ll~~lGi~ 404 (489)
T PRK04172 370 LPEFYQLEGIVMGEDV--SFRDLLGILKEFYKRLGFE 404 (489)
T ss_pred CCchheEEEEEEeCCC--CHHHHHHHHHHHHHHhCCc
Confidence 9999999999999753 3689999999999999984
No 38
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=99.72 E-value=2.9e-17 Score=163.36 Aligned_cols=152 Identities=23% Similarity=0.304 Sum_probs=127.9
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC----CCe
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NRR 142 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~----G~~ 142 (302)
.++++..++|+.+|+|.++++++.|.+.+++.|+++||++|.+|+|.+.++|....|+. ..+++|.+.|.+ ++.
T Consensus 26 ~l~d~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~ 105 (477)
T PRK08661 26 ELADYSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEK 105 (477)
T ss_pred cCcccCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCce
Confidence 34677779999999999999999999999999999999999999999999997554442 368899999876 568
Q ss_pred EeeCCCC----hHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCC--CCccceeEeeEEEeccCChhHHH---HHHHHH
Q 022115 143 VALRPEL----TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAVTAEA---ELISSI 213 (302)
Q Consensus 143 l~LRpDl----T~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~--gr~rEf~Q~g~EiiG~~~~~aDa---Evi~l~ 213 (302)
++|||+. |..+++++.++ .++|+|+|++++|||+|...+ .|.|||+|.+.+++..+...++. +++.+.
T Consensus 106 l~LrPtsE~~i~~~~~~~i~Sy---rdLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y 182 (477)
T PRK08661 106 LALRPTSETIIYPMYKKWIQSY---RDLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIY 182 (477)
T ss_pred EEEecCCcHHHHHHHHhhhcch---hhcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHH
Confidence 9999999 77777777654 358999999999999996665 48999999999988776555544 457888
Q ss_pred HHHH-HHcCCC
Q 022115 214 ITFF-KRIGIT 223 (302)
Q Consensus 214 ~eil-~~lgl~ 223 (302)
.+++ +.||++
T Consensus 183 ~~i~~~~Lglp 193 (477)
T PRK08661 183 KEFFEDYLAIP 193 (477)
T ss_pred HHHHHHhcCCe
Confidence 8999 888875
No 39
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=99.70 E-value=2.3e-16 Score=155.70 Aligned_cols=177 Identities=21% Similarity=0.325 Sum_probs=135.7
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCC-cccch----HHhhhhhcccc--ccccEEEeeC---
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFP-VLESE----ALFIRKAGEEI--RDQLYCFEDR--- 138 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP-~le~~----d~~~~~~g~~~--~~~~~~f~D~--- 138 (302)
+.+++..|. +...+....-...+.+.++++|...||.++.+| -+|.. |.+..-..+.. ...+|-+.++
T Consensus 212 k~yn~~~~~--~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~ 289 (494)
T PTZ00326 212 KEYNFNALG--KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETS 289 (494)
T ss_pred ccceecCCC--CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCcccc
Confidence 335555553 566677778889999999999999999999876 56642 21111111111 2345555331
Q ss_pred ----------------------------------CCCeEeeCCCChHHHHHHHHHhCCC----CC-CCeEEEEEcccccc
Q 022115 139 ----------------------------------GNRRVALRPELTPSLARLVIQKGKS----VS-LPLKWFAVGQCWRY 179 (302)
Q Consensus 139 ----------------------------------~G~~l~LRpDlT~~iaR~~a~~~~~----~~-~P~K~~yig~VfR~ 179 (302)
..+.++||+++|++.+|+++.+.+. .+ .|+|+|++|+|||+
T Consensus 290 ~~~~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~ 369 (494)
T PTZ00326 290 KVNDLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRN 369 (494)
T ss_pred ccccCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecC
Confidence 1247999999999999999986431 22 39999999999999
Q ss_pred CCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceE-----------------------EEeCChHH
Q 022115 180 ERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVG-----------------------FRISSRKV 236 (302)
Q Consensus 180 e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~-----------------------I~igh~~i 236 (302)
+.++.+|.+||+|++++++|.+. ++++++.++.++++++|+..-.++ |+||+.++
T Consensus 370 d~~DatH~~eFhQ~Eg~vi~~~~--s~~~L~~~l~~f~~~lG~~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIgg~Gm 447 (494)
T PTZ00326 370 ETLDATHLAEFHQVEGFVIDRNL--TLGDLIGTIREFFRRIGITKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVGNSGI 447 (494)
T ss_pred CCCCCCcCceeEEEEEEEEeCCC--CHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCeeEEEEEecCCCcEEEEeCcCc
Confidence 99999999999999999999875 678999999999999998522255 99999999
Q ss_pred HH-HHHHhCCCChh
Q 022115 237 LQ-EVLRCHSIPEH 249 (302)
Q Consensus 237 l~-~il~~~gl~~~ 249 (302)
++ .+|+.+|++++
T Consensus 448 ~rpevL~~~Gi~~~ 461 (494)
T PTZ00326 448 FRPEMLRPMGFPED 461 (494)
T ss_pred cCHHHHHhcCCCCc
Confidence 99 99999999765
No 40
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.66 E-value=6.4e-16 Score=149.93 Aligned_cols=128 Identities=25% Similarity=0.383 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhh---hccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRK---AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~---~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
..++++.++++|..+||.||.||+|...+.|... .+....+.+|.+ | +.++|||++|+++++.++.+....+.
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i-d---eel~LRpsLtPsLlr~la~n~k~~~~ 281 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV-D---KNFCLRPMLAPGLYNYLRKLDRILPD 281 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee-C---CceEehhhhHHHHHHHHHhhhhcccC
Confidence 6889999999999999999999999877765432 122234567775 2 36999999999999999876544568
Q ss_pred CeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 167 P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
|.|+|++|+|||++.++.++.+||+|++++++|.+...+ |+..++.++|+.||++
T Consensus 282 P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~~~f~--dL~~lleeLL~~LGI~ 336 (417)
T PRK09537 282 PIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSGCTRE--NLENIIDDFLKHLGID 336 (417)
T ss_pred CeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCchHHH--HHHHHHHHHHHHCCCC
Confidence 999999999999998888899999999999999776654 5779999999999984
No 41
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.61 E-value=1.4e-14 Score=127.04 Aligned_cols=129 Identities=29% Similarity=0.471 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeE
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K 169 (302)
++++.+.++++|..+||.||.||+|++.+.+.. .|.. .+.+..+.+.+++..+|||++|+++++.++.+. ...|.|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~--~~~~~~ 77 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK-AGHE-PKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI--RKLPLR 77 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH-cCcc-HhheeeeecCCCCEEEECCCCcHHHHHHHHhhc--ccCCEE
Confidence 678899999999999999999999999877653 2322 234566667789999999999999999999876 468999
Q ss_pred EEEEccccccCCCCC--CCccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHHcCC
Q 022115 170 WFAVGQCWRYERMTR--GRRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGI 222 (302)
Q Consensus 170 ~~yig~VfR~e~~~~--gr~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~lgl 222 (302)
+|++|+|||.+.... +|.+||+|++++++|.... ....+++.++.++++.+|+
T Consensus 78 lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~ 134 (211)
T cd00768 78 LAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGI 134 (211)
T ss_pred EEEEcceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCC
Confidence 999999999975443 5678999999999997653 2568999999999999997
No 42
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.54 E-value=5.8e-14 Score=131.88 Aligned_cols=144 Identities=22% Similarity=0.267 Sum_probs=121.4
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-.|+.-|.|..+++++.|.+.+.+.+.+.||++|.+|.+.+.++|.. .|+ ...+++|++.| +.++|+|+.++++
T Consensus 41 G~g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~-sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~ 116 (297)
T cd00770 41 GSRFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG-TGQLPKFDEQLYKVEG---EDLYLIATAEVPL 116 (297)
T ss_pred CCceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh-cCcCccChhcccEecC---CCEEEeecCCHHH
Confidence 34588899999999999999999999999999999999999999975 465 24678999965 6799999999999
Q ss_pred HHHHHHhC-CCCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHHcCCC
Q 022115 154 ARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 154 aR~~a~~~-~~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~lgl~ 223 (302)
+.+++... ...++|+|+|++|+|||+|... .| |.|||.|.++.++..++. ..-.+++.++.++++.||++
T Consensus 117 ~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~ 196 (297)
T cd00770 117 AALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLP 196 (297)
T ss_pred HHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99988643 2346899999999999998442 45 789999999999987533 23457899999999999997
No 43
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.4e-14 Score=140.10 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=131.8
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEee
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVAL 145 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~L 145 (302)
..|+.. +.+|+.-|+|...+++++|++.+++.+.+.|.+|+-.|+|.+.+++.. +|+. ...++|++.|++++.++|
T Consensus 29 Ag~i~~-~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkE-s~r~~~f~~El~~v~drg~~~l~L 106 (500)
T COG0442 29 AGMIRK-PVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKE-SGRWEGFGPELFRVKDRGDRPLAL 106 (500)
T ss_pred cCceec-ccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHH-hChhhhcchhhEEEEccCCceeee
Confidence 344555 999999999999999999999999999999999999999999776654 4543 468999999999999999
Q ss_pred CCCChHH---HHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHH---HHHHHHH
Q 022115 146 RPELTPS---LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSIITF 216 (302)
Q Consensus 146 RpDlT~~---iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEv---i~l~~ei 216 (302)
||..-.. +.|...++. .++|+++|+++++||+| +|..| |.|||+--+.+-+..+...++.+. +.+..++
T Consensus 107 ~PTsEe~it~~~~~~i~SY--kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~i 184 (500)
T COG0442 107 RPTSEEVITDMFRKWIRSY--KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRI 184 (500)
T ss_pred CCCcHHHHHHHHHHHhhhh--hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHHHHHHHHHHH
Confidence 9965444 334333433 46899999999999999 66777 889999889999998877777654 6788899
Q ss_pred HHHcCCCCCceEEEeCChHHH
Q 022115 217 FKRIGITASDVGFRISSRKVL 237 (302)
Q Consensus 217 l~~lgl~~~~~~I~igh~~il 237 (302)
|.++|+. +..+..+.+..
T Consensus 185 f~~i~l~---~~~~~ad~g~~ 202 (500)
T COG0442 185 FLRLPLI---FGPVPADEGFI 202 (500)
T ss_pred HHhCCce---EEeecccCCCC
Confidence 9888874 55555554443
No 44
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=3.8e-13 Score=126.36 Aligned_cols=164 Identities=20% Similarity=0.284 Sum_probs=136.3
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCC
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE 148 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpD 148 (302)
+-...-.|+.-++|-..+..+++.+.+..-|++-|...|..|.+.+.++|... |.. ...++|++.|++|+.+||.|.
T Consensus 36 fI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekT-gRw~~~gsEl~rl~Dr~gkq~cL~pT 114 (457)
T KOG2324|consen 36 FIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKT-GRWDAMGSELFRLHDRKGKQMCLTPT 114 (457)
T ss_pred ccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhc-CcccccchhheEeeccCCCEeccCCc
Confidence 44566789999999999999999999999999999999999999999999753 543 468899999999999999998
Q ss_pred ChHHHHHHHHHhCC--CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhH---HHHHHHHHHHHHHHc
Q 022115 149 LTPSLARLVIQKGK--SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTA---EAELISSIITFFKRI 220 (302)
Q Consensus 149 lT~~iaR~~a~~~~--~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~a---DaEvi~l~~eil~~l 220 (302)
-.-.+.+.+|+... ..++|+++|++|+-||+| +|..| |-|||+.-|+.-|..+...| -.-|....+.+|+.|
T Consensus 115 hEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL 194 (457)
T KOG2324|consen 115 HEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQL 194 (457)
T ss_pred hHHHHHHHHHhcCccccccCcEEeeeechhhhhccCccccchhhHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777776543 467899999999999999 78777 78999999999999876543 345777889999999
Q ss_pred CCCCCceEEEeCChHHHH
Q 022115 221 GITASDVGFRISSRKVLQ 238 (302)
Q Consensus 221 gl~~~~~~I~igh~~il~ 238 (302)
|++ |.-.-.+++.+.
T Consensus 195 ~~p---fVkv~AdsG~iG 209 (457)
T KOG2324|consen 195 GLP---FVKVWADSGDIG 209 (457)
T ss_pred CCC---eEEEeecccccC
Confidence 985 544444554444
No 45
>PLN02837 threonine-tRNA ligase
Probab=99.43 E-value=1.8e-12 Score=132.72 Aligned_cols=157 Identities=18% Similarity=0.281 Sum_probs=131.5
Q ss_pred CCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 022115 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (302)
Q Consensus 75 ~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~ 152 (302)
...|+..|+|.++++++.+.+.+++...++||++|.||.+...++|.. +|+. ..++||.+.|..++.++|||.-.+.
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~ 313 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKT-SGHLDFYKENMYDQMDIEDELYQLRPMNCPY 313 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhh-cCCcccchhhcccccCCCCceEEECCCCcHH
Confidence 357999999999999999999999999999999999999999999964 4653 4678999999888999999999888
Q ss_pred HHHHHHHhCC-CCCCCeEEEEEccccccCCC--CCC--CccceeEeeEEEeccCChhHH---HHHHHHHHHHHHHcCCCC
Q 022115 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVTAE---AELISSIITFFKRIGITA 224 (302)
Q Consensus 153 iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~--~~g--r~rEf~Q~g~EiiG~~~~~aD---aEvi~l~~eil~~lgl~~ 224 (302)
++-++..... ..++|+|++++|+|||+|.. ..| |.|||+|.++++|-.++. ++ .+++.++.++++.||++
T Consensus 314 ~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q-~~~e~~~~l~~~~~~~~~lg~~- 391 (614)
T PLN02837 314 HILVYKRKLHSYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQ-IKDEIRGVLDLTEEILKQFGFS- 391 (614)
T ss_pred HHHHHhCccCChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHH-HHHHHHHHHHHHHHHHHHcCCC-
Confidence 7777666532 34689999999999999964 235 889999999999876543 23 35788999999999997
Q ss_pred CceEEEeCChH
Q 022115 225 SDVGFRISSRK 235 (302)
Q Consensus 225 ~~~~I~igh~~ 235 (302)
.+.+.++.+.
T Consensus 392 -~~~~~~~t~~ 401 (614)
T PLN02837 392 -KYEINLSTRP 401 (614)
T ss_pred -eEEEEecCCc
Confidence 5777777653
No 46
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=99.38 E-value=5.6e-12 Score=124.92 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=115.5
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHH--cCCeeecCCcccchHHhhhhhccc--cccccEEEe-------------
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE------------- 136 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~--~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~------------- 136 (302)
.-..|+.||+|.++.+++.|++.+++.|.. .||.+|.||.+.+.++|.. +|+. ..+.||...
T Consensus 25 ~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~-SGH~~~f~d~m~~~~~~~~~~r~d~~~~ 103 (456)
T PRK04173 25 GGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEA-SGHVDNFSDPLVECKKCKKRYRADHLIE 103 (456)
T ss_pred cchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhh-cCCccccCCceeEeCCCCCEeechhhhH
Confidence 347899999999999999999999999988 8999999999999999965 4653 233344331
Q ss_pred --------------------------------------------------eCCCCeEeeCCCChHHHHHHHHHhC-CCC-
Q 022115 137 --------------------------------------------------DRGNRRVALRPELTPSLARLVIQKG-KSV- 164 (302)
Q Consensus 137 --------------------------------------------------D~~G~~l~LRpDlT~~iaR~~a~~~-~~~- 164 (302)
+.++..+.|||+....+-=.+.+.. ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~ 183 (456)
T PRK04173 104 ELGIDAEGLSNEELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARK 183 (456)
T ss_pred HHhhhhccccHHHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccc
Confidence 1223457899987766433222211 123
Q ss_pred CCCeEEEEEccccccCCC-CCC--CccceeEeeEEEeccCChh-HH-HHHHHHHHHHHHHcCCCCCceEEEeCC
Q 022115 165 SLPLKWFAVGQCWRYERM-TRG--RRREHYQWNMDIIGVPAVT-AE-AELISSIITFFKRIGITASDVGFRISS 233 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~-~~g--r~rEf~Q~g~EiiG~~~~~-aD-aEvi~l~~eil~~lgl~~~~~~I~igh 233 (302)
++|++++++|+|||+|.. ..| |.|||+|.++++|-.++.. .+ ..++.++.+++..+|+. +..++++.
T Consensus 184 dLPlr~aq~g~~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~--~~~~~~s~ 255 (456)
T PRK04173 184 KLPFGIAQIGKSFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGID--PENLRFRE 255 (456)
T ss_pred cCCeeeeEEchhHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCC--ccceEEEe
Confidence 689999999999999943 345 7899999999999875432 22 35688999999999997 34444443
No 47
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=99.38 E-value=1.1e-11 Score=126.61 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=127.8
Q ss_pred cccCC--CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeC
Q 022115 71 IDVNP--PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 71 ~~~~~--p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LR 146 (302)
+.+.+ ..|..-|+|.++.+++.|.+.+.+.+.++||.+|.||.+...+++.. +|+. ..++||.+ +.+++.++||
T Consensus 209 ~d~~~~s~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~-sgh~~~f~e~my~v-~~~~e~l~Lr 286 (613)
T PRK03991 209 ADYEPASDVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAI-REHADKFGERQYRV-KSDKKDLMLR 286 (613)
T ss_pred cccccccCeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhh-cccccccchhceEe-cCCCceEEEe
Confidence 45544 56999999999999999999999999999999999999988777653 2432 46789987 4557899999
Q ss_pred CCChHHHHHHHHHhCC-CCCCCeEEEEEcc-ccccCCCC--CC--CccceeEeeEEEeccCChhHHH---HHHHHHHHHH
Q 022115 147 PELTPSLARLVIQKGK-SVSLPLKWFAVGQ-CWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFF 217 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~-~~~~P~K~~yig~-VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~~~aDa---Evi~l~~eil 217 (302)
|...++.+-+...... ..++|+|+|++|+ +||+|..+ .| |.|||+|.++++|..+...++. +++.++.+++
T Consensus 287 p~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~ 366 (613)
T PRK03991 287 FAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETG 366 (613)
T ss_pred cCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 9999998877766542 3468999999999 99999654 34 7899999999999985333333 5688999999
Q ss_pred HHcCCCCCceEEEeCC
Q 022115 218 KRIGITASDVGFRISS 233 (302)
Q Consensus 218 ~~lgl~~~~~~I~igh 233 (302)
+.||++ +.+.++.
T Consensus 367 ~~lGl~---~~~~~~~ 379 (613)
T PRK03991 367 EDLGRD---YEVAIRF 379 (613)
T ss_pred HHcCCC---eEEEecC
Confidence 999995 7776653
No 48
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.31 E-value=3.8e-11 Score=117.85 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=118.1
Q ss_pred CCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHH
Q 022115 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLA 154 (302)
Q Consensus 77 ~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~ia 154 (302)
.|+.-|.|..+++.+.+.+.+.+.+.++||.+|.+|.+-+.+++.. .|.. ..+++|++.| +.++|+|...++++
T Consensus 163 ~g~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~-~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~~ 238 (418)
T TIGR00414 163 SRFYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDG-TGQLPKFEEDIFKLED---TDLYLIPTAEVPLT 238 (418)
T ss_pred CCeeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhh-cCccccccccceEecC---CCEEEEeCCcHHHH
Confidence 4477899999999999999999999999999999999999999865 3543 3578999854 45899999999999
Q ss_pred HHHHHhCC-CCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCChh--HHHHHHHHHHHHHHHcCCC
Q 022115 155 RLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGIT 223 (302)
Q Consensus 155 R~~a~~~~-~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lgl~ 223 (302)
-+++.... ...+|+|+|++++|||+|... .| |.+||.+.++.+|..+... .-.+++..+.++++.||++
T Consensus 239 ~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp 317 (418)
T TIGR00414 239 NLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELP 317 (418)
T ss_pred HHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88776543 346899999999999999543 24 7899999999999875332 2236789999999999996
No 49
>PRK09350 poxB regulator PoxA; Provisional
Probab=99.24 E-value=1.2e-11 Score=116.73 Aligned_cols=107 Identities=15% Similarity=0.131 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeC--CCChHHHHHHHHHhC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKG 161 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D-~~G~~l~LR--pDlT~~iaR~~a~~~ 161 (302)
...+++..+.+.+++.|..+||.||+||+++.++....... ..... |.+.| ..|+.+.|| |++| +.|.++..
T Consensus 3 ~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~-~f~~~-y~~~~~~~~~~~~L~~SPe~~--~kr~la~~- 77 (306)
T PRK09350 3 PNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLV-PFETR-FVGPGASQGKTLWLMTSPEYH--MKRLLAAG- 77 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCC-ceeee-eccccccCCcceEEecCHHHH--HHHHhhcc-
Confidence 34678999999999999999999999999987654321100 01111 55555 568999999 9998 77766643
Q ss_pred CCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 162 ~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
.-|+||+|+|||++..+.+|..||+|++++..+.+
T Consensus 78 -----~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d 112 (306)
T PRK09350 78 -----SGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYD 112 (306)
T ss_pred -----ccceEEecceeecCCCCCCCCcHHHhhhhhhhCCC
Confidence 23999999999999888889999999999988864
No 50
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.23 E-value=1.6e-10 Score=113.64 Aligned_cols=147 Identities=21% Similarity=0.283 Sum_probs=120.2
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~ 152 (302)
-.|+.-|.|..+++.+.+.+.+.+... ++||.+|.+|.+.+.+++... |+. ..+++|++. ++.++|+|...++
T Consensus 159 G~g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~-G~~~~f~~~ly~i~---~~~~~L~pTsE~~ 234 (425)
T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGT-GQLPKFEEDLYKIE---DDDLYLIPTAEVP 234 (425)
T ss_pred CceeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhc-CccccchhhceEec---CCCEEEEeCCcHH
Confidence 345788889999999999999988887 999999999999999998653 653 357799985 4679999999999
Q ss_pred HHHHHHHhCC-CCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCChh--HHHHHHHHHHHHHHHcCC
Q 022115 153 LARLVIQKGK-SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGI 222 (302)
Q Consensus 153 iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lgl 222 (302)
++.+++.... ...+|+|++.+++|||+|... .| |.+||++.++.+|..+... .-.+++.++.++++.||+
T Consensus 235 l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lgl 314 (425)
T PRK05431 235 LTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLEL 314 (425)
T ss_pred HHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988886543 346899999999999999533 44 7899999999999876321 223578999999999999
Q ss_pred CCCceEE
Q 022115 223 TASDVGF 229 (302)
Q Consensus 223 ~~~~~~I 229 (302)
+ |.+
T Consensus 315 p---yr~ 318 (425)
T PRK05431 315 P---YRV 318 (425)
T ss_pred c---EEE
Confidence 6 555
No 51
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.9e-11 Score=120.03 Aligned_cols=158 Identities=26% Similarity=0.431 Sum_probs=134.4
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
....|+.-|+|.+..+++.+++.++.....+||.+|.||.+...+++.. +|+. ..++||.+.. .++.++|||..++
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~-SGH~~~y~e~mf~~~~-~~~~~~lKpmNCp 284 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWEL-SGHWDNYKEDMFLTES-DDREYALKPMNCP 284 (589)
T ss_pred ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchh-ccchhhccccceeecc-CChhheeeeccCH
Confidence 4799999999999999999999999999999999999999999999865 4664 4678997754 4489999999999
Q ss_pred HHHHHHHHhCC-CCCCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCC-hhHH-HHHHHHHHHHHHHcCCCC
Q 022115 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPA-VTAE-AELISSIITFFKRIGITA 224 (302)
Q Consensus 152 ~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~-~~aD-aEvi~l~~eil~~lgl~~ 224 (302)
--+..+..... ...+|+|++..|.|||+|.++ .| |.|+|+|-+.+||-..+ ...| .+++.++..+++.+|++
T Consensus 285 gh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~- 363 (589)
T COG0441 285 GHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFT- 363 (589)
T ss_pred hHHHHHhcCCcceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 98888877654 356899999999999999665 34 89999999999999833 3333 36788999999999998
Q ss_pred CceEEEeCChH
Q 022115 225 SDVGFRISSRK 235 (302)
Q Consensus 225 ~~~~I~igh~~ 235 (302)
+|.+.++.+.
T Consensus 364 -~y~~~ls~r~ 373 (589)
T COG0441 364 -DYEVKLSTRP 373 (589)
T ss_pred -eEEEEEecCC
Confidence 7999998886
No 52
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.06 E-value=1.2e-09 Score=101.45 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeC--CCChHHHHHHHHHhCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALR--PELTPSLARLVIQKGKSV 164 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D-~~G~~l~LR--pDlT~~iaR~~a~~~~~~ 164 (302)
+++..+.+.+++.|.++||.+|+||+++.... |. ..+.|.+.. ..|+.+.|+ |+++ ..+.++...
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~-----~~--~~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~~--- 69 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG-----GA--GARPFLVKYNALGLDYYLRISPQLF--KKRLMVGGL--- 69 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC-----cc--ccceEEeeecCCCCcEEeecCHHHH--HHHHHhcCC---
Confidence 57889999999999999999999999986521 22 235676632 258999999 8887 444444421
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEecc
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGV 200 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~ 200 (302)
-|+|++|+|||++..+.+|.+||+|+++|....
T Consensus 70 ---~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~~ 102 (269)
T cd00669 70 ---DRVFEINRNFRNEDLRARHQPEFTMMDLEMAFA 102 (269)
T ss_pred ---CcEEEEecceeCCCCCCCcccceeEEEEEEecC
Confidence 299999999999988888999999999998866
No 53
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=98.97 E-value=4.1e-09 Score=105.37 Aligned_cols=153 Identities=18% Similarity=0.274 Sum_probs=120.7
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHH-HHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEV-SRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR-------- 138 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~v-f~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~-------- 138 (302)
+++.-+-+|+.-|.|..+++.+.+.+.+.+. ++++||+++.+|.+-+.+++... |+. ...+||.+...
T Consensus 206 lldk~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ks-Ghl~~F~e~my~V~~~~~d~e~~~ 284 (517)
T PRK00960 206 WVKRFPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKM-RYLEGLPEGMYYVCPPKRDPEYFE 284 (517)
T ss_pred CccccCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhc-CCccCChhhceEeecccccccccc
Confidence 4666678999999999999999999999875 78889999999999999998754 543 45678877421
Q ss_pred ---------------------CCCeEeeCCCChHHHHHHHHHhCC-CCCCCeEEEE-EccccccCCC-CCC--CccceeE
Q 022115 139 ---------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQ 192 (302)
Q Consensus 139 ---------------------~G~~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~y-ig~VfR~e~~-~~g--r~rEf~Q 192 (302)
....++|||..++++.-+++.... ...+|+|++. .|+|||+|.. ..| |.+||+|
T Consensus 285 ~~~~~l~~T~Evpl~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~k 364 (517)
T PRK00960 285 EFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHR 364 (517)
T ss_pred chhhhccccccccccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEE
Confidence 134679999999999887774432 3468999998 7799999942 234 7899999
Q ss_pred eeEEEeccCCh-hHHH-HHHHHHHHHHHHcCCC
Q 022115 193 WNMDIIGVPAV-TAEA-ELISSIITFFKRIGIT 223 (302)
Q Consensus 193 ~g~EiiG~~~~-~aDa-Evi~l~~eil~~lgl~ 223 (302)
..+.+++.+.. ..+. +++..+.++++.||++
T Consensus 365 vE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp 397 (517)
T PRK00960 365 IEIVWLGTPEQVEEIRDELLKYAHILAEKLDLE 397 (517)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999998543 2222 4578888899999996
No 54
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=3e-09 Score=103.15 Aligned_cols=184 Identities=22% Similarity=0.265 Sum_probs=145.3
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCC
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPE 148 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpD 148 (302)
+-.++-+|.--|+|.++++.+.+.+-++.-++.+||+||.||.+-...+|.. +|+. ..++||+|.- .....+|.|+
T Consensus 176 ff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~-SGHwqnY~enmF~~e~-eke~~~LKPM 253 (560)
T KOG1637|consen 176 FFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWET-SGHWQNYSENMFKFEV-EKEEFALKPM 253 (560)
T ss_pred eeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhh-ccchhhhhhhceeeee-chhhhccCcc
Confidence 5677899999999999999999999999999999999999999999988864 5764 5789999954 4566999999
Q ss_pred ChHHHHHHHHHhCCC-CCCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCC-hhHHH-HHHHHHHHHHHHcC
Q 022115 149 LTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPA-VTAEA-ELISSIITFFKRIG 221 (302)
Q Consensus 149 lT~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~-~~aDa-Evi~l~~eil~~lg 221 (302)
..+.-+-+.+..... ..+|+|+.-+|.+.|+|-++ .| |.|+|+|-+.+|+-.++ +..|. -++..+.-++.-+|
T Consensus 254 NCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~fl~~vY~~fg 333 (560)
T KOG1637|consen 254 NCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDFLDYVYGVFG 333 (560)
T ss_pred CCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHHHHHHHHhcc
Confidence 999988777665433 46899999999999999543 33 89999999999998744 45554 35777777777778
Q ss_pred CCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhh
Q 022115 222 ITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI 261 (302)
Q Consensus 222 l~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl 261 (302)
.. +.+.++.+-= ..+-.++..++....+..+|+..
T Consensus 334 f~---f~l~lSTRPe--~~lG~l~~Wd~AE~~L~~al~e~ 368 (560)
T KOG1637|consen 334 FT---FKLNLSTRPE--KFLGDLETWDEAEFKLEEALNES 368 (560)
T ss_pred cc---ceeEeccChH--HhccCHHHHHHHHHHHHHHHHHh
Confidence 64 8888887653 45555555555556666666643
No 55
>PLN02678 seryl-tRNA synthetase
Probab=98.92 E-value=1.3e-08 Score=100.61 Aligned_cols=146 Identities=15% Similarity=0.205 Sum_probs=107.4
Q ss_pred CccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHHHH
Q 022115 79 TRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLARL 156 (302)
Q Consensus 79 ~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~iaR~ 156 (302)
+..+.+..+++...+.+.+.+....+||.+|.||.+-..+++... |+. ..++||++.+. |....|-+..-++++-+
T Consensus 166 ~y~l~g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~s-G~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~ 243 (448)
T PLN02678 166 GYYLKGAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKC-AQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAY 243 (448)
T ss_pred eEEECCHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhc-CCcccchhcCceecCC-CCceeeecccccccChH
Confidence 333444899999999999999999999999999999999998753 543 45789999654 33455555332344444
Q ss_pred HHHh-CCCCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCC----hhHHHHHHHHHHHHHHHcCCCC
Q 022115 157 VIQK-GKSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPA----VTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 157 ~a~~-~~~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~----~~aDaEvi~l~~eil~~lgl~~ 224 (302)
++.. .....+|+|++.+++|||+|... +| |.++|+|..+-+|..++ ...-.|++..+.++|+.|||+
T Consensus 244 h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lp- 322 (448)
T PLN02678 244 HRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIP- 322 (448)
T ss_pred HhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCC-
Confidence 4322 22346899999999999999653 33 57899999887775443 233347899999999999996
Q ss_pred CceEE
Q 022115 225 SDVGF 229 (302)
Q Consensus 225 ~~~~I 229 (302)
|.+
T Consensus 323 --yrv 325 (448)
T PLN02678 323 --YQV 325 (448)
T ss_pred --eEE
Confidence 776
No 56
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=98.87 E-value=4.5e-08 Score=89.81 Aligned_cols=132 Identities=18% Similarity=0.272 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhhh---ccc--cccccEEEeeCC---CCeEeeCCCChHHHHHHH
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKA---GEE--IRDQLYCFEDRG---NRRVALRPELTPSLARLV 157 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d-~~~~~~---g~~--~~~~~~~f~D~~---G~~l~LRpDlT~~iaR~~ 157 (302)
..-...+.+.++++|...||+++..|.++... .|..-. .+. ....+|-+.++. .+..+||..+|+..+|.+
T Consensus 16 ~hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l 95 (247)
T PF01409_consen 16 LHPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTL 95 (247)
T ss_dssp TSHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHH
Confidence 34567889999999999999999999997643 332211 111 124567675654 478999999999999998
Q ss_pred HHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc-CCC
Q 022115 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI-GIT 223 (302)
Q Consensus 158 a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l-gl~ 223 (302)
.. ..+.|.|++++|+|||++.....+..+|+|++.=+++.+... .++..++.++++.+ |..
T Consensus 96 ~~---~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~~~f--~~Lk~~l~~l~~~lfG~~ 157 (247)
T PF01409_consen 96 NK---HRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKNVTF--EDLKGTLEELLKELFGID 157 (247)
T ss_dssp TT---TSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETTE-H--HHHHHHHHHHHHHHHTTT
T ss_pred HH---hcCCCeEEEecCceEecCCcccccCccceeEeeEEEecccch--hHHHHHHHHHHHHHhhcc
Confidence 22 235799999999999999877788889999999888875443 46888888888888 864
No 57
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.86 E-value=4.5e-08 Score=97.22 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=124.8
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHH-HHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQ-EVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR-------- 138 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~-~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~-------- 138 (302)
+++.-+-+|+.-|.|..+++.+.+.+.+. ..++++||+++.+|.|-+.+.+... |+. ...++|.+...
T Consensus 206 lidk~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~-ghl~gF~~e~y~Vt~~~~d~d~~~ 284 (520)
T TIGR00415 206 WVKKFPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKM-RYLEGLPEGMYYCCAPKRDPELFE 284 (520)
T ss_pred CeeEEcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHccc-CCCCCCchhheEEecCCCCcchhh
Confidence 46677889999999999999999999995 5778899999999999999988754 432 35678876421
Q ss_pred ---------------------CCCeEeeCCCChHHHHHHHHHhCC-CCCCCeEEEE-EccccccCCC-CCC--CccceeE
Q 022115 139 ---------------------GNRRVALRPELTPSLARLVIQKGK-SVSLPLKWFA-VGQCWRYERM-TRG--RRREHYQ 192 (302)
Q Consensus 139 ---------------------~G~~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~y-ig~VfR~e~~-~~g--r~rEf~Q 192 (302)
....++|+|-..+++.-+++.... ...+|+|++. .++|||+|.. ..| |.+||.+
T Consensus 285 ~f~~~~~~~~eipi~~L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~k 364 (520)
T TIGR00415 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLR 364 (520)
T ss_pred ccccccccccccccccccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEE
Confidence 123789999999999988875542 3468999999 6689999953 344 6789999
Q ss_pred eeEEEeccCChh--HHHHHHHHHHHHHHHcCCCCCceEEEeCC
Q 022115 193 WNMDIIGVPAVT--AEAELISSIITFFKRIGITASDVGFRISS 233 (302)
Q Consensus 193 ~g~EiiG~~~~~--aDaEvi~l~~eil~~lgl~~~~~~I~igh 233 (302)
.-+..+|.+... .-.+.+..+.++++.|+|+ |.+..++
T Consensus 365 vE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lp---yrv~~ad 404 (520)
T TIGR00415 365 VECVWIAEPEETEEIRDKTLELAEDAADELDLE---WWTEVGD 404 (520)
T ss_pred EEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCC---eEEeecC
Confidence 888888874322 2235688999999999995 7777766
No 58
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=98.82 E-value=4.6e-08 Score=91.92 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=102.0
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-HHhhhhhc----ccccc--ccEEEeeCCCC
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRKAG----EEIRD--QLYCFEDRGNR 141 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-d~~~~~~g----~~~~~--~~~~f~D~~G~ 141 (302)
+.+++.+|.+. ..+........+.+.++++|...||.|+.+|.|+.. ..+.. .+ +.... +.+.+. .
T Consensus 55 ~~~d~tlp~~~--~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~-l~~~~~hpar~~~d~~~l~----d 127 (294)
T TIGR00468 55 ETYDVTLPGTK--IYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDA-LNIPQDHPARDMQDTFYIK----D 127 (294)
T ss_pred ccCcccCCCCC--CCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHH-hCCCCCCcchhhccceeec----C
Confidence 34566666532 222355566788889999999999999999999876 23322 11 11111 455554 4
Q ss_pred eEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcC
Q 022115 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lg 221 (302)
..+||+.+++.+.|.++.|.. .|+|+|.+|+|||.+.....+..||+|+++-+++.+ ..-.++..++..++..+|
T Consensus 128 ~~vLRtsl~p~ll~~l~~N~~---~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~--~~f~dLKg~le~ll~~l~ 202 (294)
T TIGR00468 128 RLLLRTHTTAVQLRTMEENEK---PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKN--VSFTNLKGFLEEFLKKMF 202 (294)
T ss_pred CcceecccHHHHHHHHHhcCC---CCceEEEecceEEcCCCCCccCChhhEEEEEEECCC--CCHHHHHHHHHHHHHHhC
Confidence 578999999999999998754 699999999999987544344459999988888742 224677888888888887
Q ss_pred CC
Q 022115 222 IT 223 (302)
Q Consensus 222 l~ 223 (302)
+.
T Consensus 203 ~~ 204 (294)
T TIGR00468 203 GE 204 (294)
T ss_pred CC
Confidence 63
No 59
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=98.76 E-value=1.7e-07 Score=93.00 Aligned_cols=167 Identities=17% Similarity=0.248 Sum_probs=122.5
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHcCCeee-cCCcccch----HHhhhhhccc--cccccEEEeeC---------------
Q 022115 81 DFPPEDMRLRNWLFHNFQEVSRLFGFEEV-DFPVLESE----ALFIRKAGEE--IRDQLYCFEDR--------------- 138 (302)
Q Consensus 81 d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI-~tP~le~~----d~~~~~~g~~--~~~~~~~f~D~--------------- 138 (302)
...+....-...+.+.++++|...||.++ .-|-+|.. |.+..-..+. -...+|-+.++
T Consensus 214 ~~~~G~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~erVk 293 (492)
T PLN02853 214 PPEGGHLHPLLKVRQQFRKIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVERVK 293 (492)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEEecCCCCeechhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHHHH
Confidence 34445566778899999999999999999 56777753 1111101111 12345655421
Q ss_pred --------------------CCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEe
Q 022115 139 --------------------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDII 198 (302)
Q Consensus 139 --------------------~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~Eii 198 (302)
..+.++||...|+--+|++.........|.|+|.+|+|||++.....|..||+|+..=++
T Consensus 294 ~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~iDatH~~eFhQ~EG~vv 373 (492)
T PLN02853 294 TVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAVDRTHLAEFHQVEGLVC 373 (492)
T ss_pred HHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCCCcccCccceeEEEEEE
Confidence 115799999999999999996432223699999999999999888889999999988888
Q ss_pred ccCChhHHHHHHHHHHHHHHHcCCCCC-----------------------ceEEEeCChHHHH-HHHHhCCCChh
Q 022115 199 GVPAVTAEAELISSIITFFKRIGITAS-----------------------DVGFRISSRKVLQ-EVLRCHSIPEH 249 (302)
Q Consensus 199 G~~~~~aDaEvi~l~~eil~~lgl~~~-----------------------~~~I~igh~~il~-~il~~~gl~~~ 249 (302)
+.+-.. +.++.++.++++++|...- +=.|+|++.++++ .+|+.+|+|+.
T Consensus 374 d~~~t~--~~L~g~l~~f~~~lg~~~~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpevl~~~Gi~~~ 446 (492)
T PLN02853 374 DRGLTL--GDLIGVLEDFFSRLGMTKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEMLLPMGLPED 446 (492)
T ss_pred eCCCCH--HHHHHHHHHHHHHcCCceEEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHHHHhCCCCCc
Confidence 876444 4688999999999875310 0048888999998 89999999764
No 60
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=98.74 E-value=2.3e-07 Score=83.49 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhhhcccccc------ccEEEeeCCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRKAGEEIRD------QLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d-~~~~~~g~~~~~------~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
.+.+.+.+++.+...||.|+.|++|...+ .+. ..+-.... ..+++.++- .-+||+.+++++.+.++.|
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~-~~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N-- 77 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFD-ALNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL-- 77 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccchhhh-hcCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc--
Confidence 45678889999999999999999997662 232 12211000 235565554 7899999999999999988
Q ss_pred CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lg 221 (302)
..+.|+|++|+|||.+..+.++..|+.++++.+.|... ...++..++..+++.+|
T Consensus 78 --~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~~--df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 78 --KPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKGL--TFADLKGTLEEFAKELF 132 (218)
T ss_pred --CCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCCC--CHHHHHHHHHHHHHHhc
Confidence 35999999999999875333444599999999999532 35678888888888888
No 61
>PLN02320 seryl-tRNA synthetase
Probab=98.73 E-value=5.7e-08 Score=96.83 Aligned_cols=155 Identities=18% Similarity=0.255 Sum_probs=113.0
Q ss_pred CCCCcc-CChHHHH-HHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc--cc-ccEEEeeCCCCeEeeCCCCh
Q 022115 76 PKGTRD-FPPEDMR-LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI--RD-QLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 76 p~G~~d-~lp~~~~-~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~--~~-~~~~f~D~~G~~l~LRpDlT 150 (302)
..|.+- |++.+.. +...+.+.+.+...++||.+|.||.+...+++.. .|+.. .. .+|++. |+.++|-|..-
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~-sG~~p~~e~~~~y~ie---~ed~~Li~TaE 295 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEK-CGFQPRGDNTQVYSID---GSDQCLIGTAE 295 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHh-cCCCcccccCceeEEC---CCceEEeeccc
Confidence 358888 5787666 4479999999999999999999999999999865 36532 12 567663 46688866555
Q ss_pred HHHHHHHHHhC-CCCCCCeEEEEEccccccCCCCCC-------CccceeEeeEEEeccCCh-hHH-HHHHHHHHHHHHHc
Q 022115 151 PSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRG-------RRREHYQWNMDIIGVPAV-TAE-AELISSIITFFKRI 220 (302)
Q Consensus 151 ~~iaR~~a~~~-~~~~~P~K~~yig~VfR~e~~~~g-------r~rEf~Q~g~EiiG~~~~-~aD-aEvi~l~~eil~~l 220 (302)
.|++-...... ....+|+|++..|+|||+|....| |.++|.|..+.+|-.++. ..+ .+++..+.++++.|
T Consensus 296 ~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~L 375 (502)
T PLN02320 296 IPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSL 375 (502)
T ss_pred ccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHc
Confidence 55443333221 234689999999999999965333 678999999999987433 233 36799999999999
Q ss_pred CCCCCceEEEeCChHH
Q 022115 221 GITASDVGFRISSRKV 236 (302)
Q Consensus 221 gl~~~~~~I~igh~~i 236 (302)
|++ ...+.+...++
T Consensus 376 gLp--yrvv~l~tgDL 389 (502)
T PLN02320 376 GLH--FKTLDMATADL 389 (502)
T ss_pred CCC--eEEEEecCCcc
Confidence 997 44555554444
No 62
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=98.72 E-value=1.1e-07 Score=88.89 Aligned_cols=99 Identities=24% Similarity=0.452 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHH-HHHhCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARL-VIQKGKSV 164 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~-~a~~~~~~ 164 (302)
++|..+...+++.|..+||.||+||++..... . |. .. |.+.. ..|..+.|+-- +++... +...+
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~--~--g~--~~--f~~~~~~~~~~~~~L~~S--pql~lk~ll~~g--- 68 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTKSTP--E--GA--RD--FLVPSRLHPGKFYALPQS--PQLFKQLLMVSG--- 68 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeecCCC--C--CC--CC--ceeccccCCCceeecccC--HHHHHHHHHhcC---
Confidence 57889999999999999999999999975332 1 11 11 32221 13444445522 223222 22212
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+||+|+|||++.++.+|..||+|+++|+.+.+
T Consensus 69 --~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~~~ 103 (280)
T cd00777 69 --FDRYFQIARCFRDEDLRADRQPEFTQIDIEMSFVD 103 (280)
T ss_pred --cCcEEEeccceeCCCCCCCccceeEEeEeeeccCC
Confidence 24999999999999988888889999999999874
No 63
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.66 E-value=1.9e-07 Score=88.88 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 83 lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
.-.-.+++.+|.+.+++.|.++||.+|+||+++.... + -..+.|.+ +--|+.+.|+--...-.=+.++.
T Consensus 20 ~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~------e-~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~--- 88 (322)
T cd00776 20 VQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDT------E-GGAELFKV-SYFGKPAYLAQSPQLYKEMLIAA--- 88 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCC------C-ccCCcccc-ccCCCcceecCCHHHHHHHHHHh---
Confidence 3445689999999999999999999999999997321 1 12334443 33566777764333333333332
Q ss_pred CCCCCeEEEEEccccccCCCCC-CCccceeEeeEEEeccCCh
Q 022115 163 SVSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVPAV 203 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~-gr~rEf~Q~g~EiiG~~~~ 203 (302)
--|+|+||+|||.+.... .|..||+|+++|..+.++.
T Consensus 89 ----~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~ 126 (322)
T cd00776 89 ----LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDY 126 (322)
T ss_pred ----hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCH
Confidence 238999999999997554 3678999999999988443
No 64
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=98.64 E-value=8.5e-07 Score=84.54 Aligned_cols=138 Identities=17% Similarity=0.245 Sum_probs=103.6
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhh---hcccc--ccccEEEeeCCCCeEe
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK---AGEEI--RDQLYCFEDRGNRRVA 144 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d-~~~~~---~g~~~--~~~~~~f~D~~G~~l~ 144 (302)
+++.+|. +.+......-...+.+.++++|...||.++..|.++... .|..- .++.. ...+|.+ ....+
T Consensus 93 ~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~l 166 (339)
T PRK00488 93 IDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGLL 166 (339)
T ss_pred ccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCce
Confidence 5666664 445555667788999999999999999999999998643 23221 01110 1245666 24589
Q ss_pred eCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 145 LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
||..+|+..+|.+..+ ..|+|++.+|+|||++.....|..+|+|+..=+++.+... +++..++..+++.+
T Consensus 167 LRThTSp~qir~L~~~----~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~vtf--~dLK~~L~~fl~~~ 236 (339)
T PRK00488 167 LRTHTSPVQIRTMEKQ----KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKNISF--ADLKGTLEDFLKAF 236 (339)
T ss_pred eeccCcHHHHHHHHhc----CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCCCCH--HHHHHHHHHHHHHH
Confidence 9999999999998762 3699999999999998767778999999999999876544 56777777777766
No 65
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=2.5e-07 Score=91.52 Aligned_cols=127 Identities=20% Similarity=0.290 Sum_probs=96.7
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHH--cCCeeecCCcccchHHhhhhhccc------------------------
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRL--FGFEEVDFPVLESEALFIRKAGEE------------------------ 127 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~--~Gy~eI~tP~le~~d~~~~~~g~~------------------------ 127 (302)
.-.+|+.||.|.++.++++|.+.+++.|-. -|..+|+||++.+.++|.. +|+.
T Consensus 27 GG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kA-SGHvd~FsDplv~c~~c~~~yRADHLiE 105 (558)
T COG0423 27 GGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKA-SGHVDKFSDPLVECKKCGERYRADHLIE 105 (558)
T ss_pred cCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhh-cCcccccccceeeccccchhhhhhHHHH
Confidence 345799999999999999999999999965 5899999999999988864 3532
Q ss_pred --ccc------------------------------------ccEEE-eeC-CCCeEeeCCCChH----HHHHHHHHhCCC
Q 022115 128 --IRD------------------------------------QLYCF-EDR-GNRRVALRPELTP----SLARLVIQKGKS 163 (302)
Q Consensus 128 --~~~------------------------------------~~~~f-~D~-~G~~l~LRpDlT~----~iaR~~a~~~~~ 163 (302)
... -||+. +.+ +|+...|||+... .|-|.+-...
T Consensus 106 e~l~~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r-- 183 (558)
T COG0423 106 EYLGKDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFAR-- 183 (558)
T ss_pred HHhhhcccccCCHHHHHHHHHHcCCcCCCcCCccCCcceeeeEEEeeecCCCCcceeecccccchhhhhhHHHHHHhc--
Confidence 000 02221 111 4678999999654 3566655443
Q ss_pred CCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCCh
Q 022115 164 VSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAV 203 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~ 203 (302)
..+|+-+.+||+.||+| .|..| |.|||+|+.+|.|-.+..
T Consensus 184 ~klPFgiaQIGKsfRNEISPr~gl~R~REF~QaEiE~Fv~P~~ 226 (558)
T COG0423 184 NKLPFGIAQIGKSFRNEISPRNGLFRTREFEQAEIEFFVDPEE 226 (558)
T ss_pred cCCCeEEEeechhhccccCcccceeehhhhhhhheeeEECCCc
Confidence 35899999999999999 66666 889999999999986543
No 66
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=98.58 E-value=7.8e-07 Score=88.32 Aligned_cols=154 Identities=19% Similarity=0.327 Sum_probs=111.9
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHH--HHcCCeeecCCcccchHHhhhhhcccc-----------ccc--------
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRKAGEEI-----------RDQ-------- 131 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf--~~~Gy~eI~tP~le~~d~~~~~~g~~~-----------~~~-------- 131 (302)
+.-..|+.||.|-++.+++.|.+.+.+.| .+-+..+|++|++.+..+|.. +|+.- .+.
T Consensus 26 Ygg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~a-SGH~~~F~DpmV~CkkCk~ryRaD~Li 104 (539)
T PRK14894 26 YGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKY-SGHEETFNDPLVDCRDCKMRWRADHIQ 104 (539)
T ss_pred cCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeee-ccCCCCCCCceeECCCCCccccCccce
Confidence 34567999999999999999999999988 466778999999999988754 35420 001
Q ss_pred -------------------cEEEe-eC---CCCeEeeCCCChHH----HHHHHHHhCCCCCCCeEEEEEccccccC-CCC
Q 022115 132 -------------------LYCFE-DR---GNRRVALRPELTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMT 183 (302)
Q Consensus 132 -------------------~~~f~-D~---~G~~l~LRpDlT~~----iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~ 183 (302)
||+.. .+ +.....|||+.... |.|.+..+. ..+|+-+.++|++||+| .|.
T Consensus 105 ikCP~CGs~dLTe~~~FNLMF~T~iGp~~~~~~~~yLRPETAQGiFvnFk~ll~~~~--~klPFgiaQIGk~FRNEIsPr 182 (539)
T PRK14894 105 GVCPNCGSRDLTEPRPFNMMFRTQIGPVADSDSFAYLRPETAQGIFVNFANVLATSA--RKLPFGIAQVGKAFRNEINPR 182 (539)
T ss_pred eeCCCCCCcCCCcceeccccceeccccCCCcCcceeeCcccchHHHHHHHHHHHhcC--CCCCeeEEeeeccccCccCCC
Confidence 12111 11 12468999997765 566666554 45899999999999999 666
Q ss_pred CC--CccceeEeeEEEeccCChh--HHHHHHHHHHHHHHHcCCCCCceEE
Q 022115 184 RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIGITASDVGF 229 (302)
Q Consensus 184 ~g--r~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lgl~~~~~~I 229 (302)
.| |.|||+|+.+|.|-.++.. --+--+......+.++|+...++.+
T Consensus 183 ~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~~fl~~iGi~~~~lrf 232 (539)
T PRK14894 183 NFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARLAWWEQIGIPRSRITI 232 (539)
T ss_pred CceeecccchhheEEEEeCCCchHHHHHHHHHHHHHHHHHhCCCHHHeee
Confidence 66 8999999999999876532 2223356666788889987544433
No 67
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=98.54 E-value=4.1e-07 Score=91.82 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=95.0
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhcccc-----------ccc------------
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEI-----------RDQ------------ 131 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~d~~~~~~g~~~-----------~~~------------ 131 (302)
..|+.||.|-++.++++|.+.+++.| ...|+.+|++|++.+.++|.. +|+.- ...
T Consensus 26 ~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~a-SGh~~~F~D~mv~~~~~~~~~RaD~l~e~~~ 104 (551)
T TIGR00389 26 LAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKA-SGHVDNFTDWMVDCKSCKERFRADHLIEEKL 104 (551)
T ss_pred ccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHh-cCCccccCCceeecCCCCCEecchHHHHHHh
Confidence 67999999999999999999999999 488999999999999988864 35320 000
Q ss_pred ---------------------------------------cEEEe-eC-CCCeEeeCCCChHH----HHHHHHHhCCCCCC
Q 022115 132 ---------------------------------------LYCFE-DR-GNRRVALRPELTPS----LARLVIQKGKSVSL 166 (302)
Q Consensus 132 ---------------------------------------~~~f~-D~-~G~~l~LRpDlT~~----iaR~~a~~~~~~~~ 166 (302)
||+.. .+ ++....|||+.... |-|.+-.+. ..+
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~i~~p~~g~~~~~~~~~FNLMF~t~iGp~~~~~~yLRPETAQGiFvnFk~l~~~~~--~kl 182 (551)
T TIGR00389 105 GKRLWGFSGPELNEVMEKYDINCPNCGGENLTEVRSFNLMFQTEIGVVGKRKGYLRPETAQGIFINFKRLLQFFR--RKL 182 (551)
T ss_pred hhhcccCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccceeeccCCCCCcccccccccchhhHHhHHHHHHhcC--CCC
Confidence 11110 01 13478899997654 566655543 358
Q ss_pred CeEEEEEccccccC-CCCCC--CccceeEeeEEEeccC
Q 022115 167 PLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVP 201 (302)
Q Consensus 167 P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~ 201 (302)
|+-+.+||++||+| .|..| |.|||+|+.+|.|-.+
T Consensus 183 PfgiaQiGk~fRNEIsPr~~l~R~REF~q~EiE~F~~p 220 (551)
T TIGR00389 183 PFGVAQIGKSFRNEISPRNGLFRVREFEQAEIEFFVHP 220 (551)
T ss_pred CeeehhhhHhhhcccCcccceEEeehhhhchhheecCc
Confidence 99999999999999 77777 8999999999999764
No 68
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=98.43 E-value=5.2e-07 Score=85.21 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee----CCCCeEeeCCCChHHHHHHHHHhCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED----RGNRRVALRPELTPSLARLVIQKGKS 163 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D----~~G~~l~LRpDlT~~iaR~~a~~~~~ 163 (302)
++|.++.+.++++|.++||.+|+||+++.... .+...+.|.+.- ..++...|+----...-|.++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~------~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g--- 72 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPAPV------TDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAG--- 72 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecCCC------CCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhcc---
Confidence 57899999999999999999999999996531 111234454421 12345555533222233334432
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||.|....-|.-||++++++..+.+
T Consensus 73 ---~~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~~d 107 (304)
T TIGR00462 73 ---SGPIFQICKVFRNGERGRRHNPEFTMLEWYRPGFD 107 (304)
T ss_pred ---CCCEEEEcCceeCCCCCCCcccHHHhHHHHHHcCC
Confidence 23999999999999776556789999999877653
No 69
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=4.5e-06 Score=79.34 Aligned_cols=170 Identities=19% Similarity=0.292 Sum_probs=123.8
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch----HHhhhhhcccc--ccccEEEeeCCCCeEe
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE----ALFIRKAGEEI--RDQLYCFEDRGNRRVA 144 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~----d~~~~~~g~~~--~~~~~~f~D~~G~~l~ 144 (302)
+++.+|.- .+.+........+.+.++++|...||.++..|.+|.. |.+..-..+.. ...+|-+.+. .+.++
T Consensus 96 ~dv~lp~~--~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~-~~~~l 172 (335)
T COG0016 96 IDVTLPGR--RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDD-REKLL 172 (335)
T ss_pred CCcCCCCc--cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccccceEEEcCC-CCcee
Confidence 55555543 5566677788999999999999999999999988853 11111111111 2446766543 23789
Q ss_pred eCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcC-CC
Q 022115 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIG-IT 223 (302)
Q Consensus 145 LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lg-l~ 223 (302)
||-+.|+--+|.+..+.. .|+|++.+|+|||++.....+.-+|+|+..=+++.+-.. +.+..++.+.++.++ ..
T Consensus 173 LRTHTs~vq~R~l~~~~~---~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd~~~s~--~~Lkg~L~~f~~~~fg~~ 247 (335)
T COG0016 173 LRTHTSPVQARTLAENAK---IPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVDKNISF--ADLKGTLEEFAKKFFGED 247 (335)
T ss_pred ecccCcHhhHHHHHhCCC---CCceEecccceecCCCCCcccchheeeeEEEEEeCCccH--HHHHHHHHHHHHHhcCCC
Confidence 999999999999998753 299999999999999778889999999988777765443 578888888888886 32
Q ss_pred -C---------------------Cce--EEEeCChHHHH-HHHHhCCCCh
Q 022115 224 -A---------------------SDV--GFRISSRKVLQ-EVLRCHSIPE 248 (302)
Q Consensus 224 -~---------------------~~~--~I~igh~~il~-~il~~~gl~~ 248 (302)
. ... .|+|+..++++ .+|+.+|+.+
T Consensus 248 ~~vRfrpsyFPFTEPS~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~~~ 297 (335)
T COG0016 248 VKVRFRPSYFPFTEPSAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGIDP 297 (335)
T ss_pred cceEeecCCCCCCCCeEEEEEEEcCCCCEEEEecccccCHHHHHhcCCCC
Confidence 0 011 57777788876 7888888544
No 70
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=98.40 E-value=4.1e-06 Score=79.91 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe----eCCCCeEeeCCCChHHHHHHHHHhC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE----DRGNRRVALRPELTPSLARLVIQKG 161 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~----D~~G~~l~LRpDlT~~iaR~~a~~~ 161 (302)
-.+++..+.+.+++.|...||.||+||++..... +. ..+.|.+. +-.|+.+-|+.-.-...=++++..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~------~~-~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g- 92 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSSTC------EG-GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG- 92 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESSSS------SS-SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecccc------Cc-cccccccccchhhhcccceecCcChHHHHhhhcccc-
Confidence 4578999999999999999999999999986531 11 34677775 235677778765444444444432
Q ss_pred CCCCCCeEEEEEccccccCCC-CCCCccceeEeeEEEeccCCh
Q 022115 162 KSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAV 203 (302)
Q Consensus 162 ~~~~~P~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~ 203 (302)
--|+|+||+|||.+.. ..-|..||+|+++|.-+.+..
T Consensus 93 -----~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~ 130 (335)
T PF00152_consen 93 -----LERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYD 130 (335)
T ss_dssp -----HSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHH
T ss_pred -----chhhhheecceeccCcccccchhhhhhhhhccccCcHH
Confidence 2399999999999977 344567999999999887543
No 71
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=98.38 E-value=5.7e-06 Score=78.99 Aligned_cols=101 Identities=20% Similarity=0.270 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHH--HHHHHhCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLA--RLVIQKGK 162 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~ia--R~~a~~~~ 162 (302)
-.++|..+...+++.|..+||.||+||++.... .|. ..+.|... +..|+...|+- .+++. +.++. +
T Consensus 7 ~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~-----~~~--~~~~f~~~~~~~~~~~yL~~--Spql~~k~ll~~-g- 75 (329)
T cd00775 7 TFIVRSKIISYIRKFLDDRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDMDLYLRI--APELYLKRLIVG-G- 75 (329)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCccccCC-----CCc--cceeEEeccCCCCcceeecc--CHHHHHHHHHhc-C-
Confidence 457899999999999999999999999997542 111 12344432 23466666763 23343 33222 2
Q ss_pred CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||.+..+.-|.-||+|+++|..+.+
T Consensus 76 ----~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~~~ 110 (329)
T cd00775 76 ----FERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAYAD 110 (329)
T ss_pred ----CCcEEEEeccccCCCCCCCCCCceEEEEEeeecCC
Confidence 34999999999999776657789999999988763
No 72
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=6.6e-06 Score=76.04 Aligned_cols=169 Identities=15% Similarity=0.114 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccE--EEeeC---CCCeEeeCCCChHHHHHHHHH
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLY--CFEDR---GNRRVALRPELTPSLARLVIQ 159 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~--~f~D~---~G~~l~LRpDlT~~iaR~~a~ 159 (302)
+..-.|..|.+.++..|..+||.||+||++...- +.+..-..| .++.+ ++..+-|.+---..+-|.+|.
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~------vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAa 87 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAP------VTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAA 87 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCC------CCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHc
Confidence 4567899999999999999999999999997532 222111222 22333 356777776666678888887
Q ss_pred hCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHH
Q 022115 160 KGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQE 239 (302)
Q Consensus 160 ~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~ 239 (302)
- .-++|++|+|||++..+.-+.-||+.....-+|.+-...-.|+=.+...+++.-+.+ . ..+-++
T Consensus 88 g------~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~vl~~~~~E--~-------ls~~ea 152 (322)
T COG2269 88 G------SGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQLVLECVEAE--R-------LSYQEA 152 (322)
T ss_pred c------CCcchhhhHHHhcccccccCCCceeEeeeeccCCcHHHHHHHHHHHHHHHHccCCcc--e-------eeHHHH
Confidence 4 347999999999987655567799998888888765544445555555555554433 1 234567
Q ss_pred HHHhCCCChh--hHHHHHHHHHhhh-----cCCHHHHHHHHH
Q 022115 240 VLRCHSIPEH--LFGKVCIIIDKIE-----KLPLDVIKNDLK 274 (302)
Q Consensus 240 il~~~gl~~~--~~~~v~~~ldkl~-----k~~~~~v~~~L~ 274 (302)
+++.+|++.- .+..+...+++.. .-+|+.+-..|-
T Consensus 153 F~r~~gid~l~~~~~~L~~~~~~~~l~~~~~~~~d~L~~~lf 194 (322)
T COG2269 153 FLRYLGIDPLSADKTELREAAAKLGLSAATDEDWDTLLQLLF 194 (322)
T ss_pred HHHHhCCCcccccHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 7788887652 4566666666653 236777766653
No 73
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=98.34 E-value=4.9e-06 Score=84.79 Aligned_cols=102 Identities=22% Similarity=0.395 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHhCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGKS 163 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~~a~~~~~ 163 (302)
-.++|..+...+++.|...||.||+||++..... .|. .. |.+.. ..|..+.|+ ..+++....+.-..
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~----eGa--r~--f~vp~~~~~~~~y~L~--qSpQlykq~l~v~G- 205 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTP----EGA--RD--YLVPSRVHKGEFYALP--QSPQLFKQLLMVSG- 205 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccCCC----CCC--cc--eeeeeecCCCceeecC--CCHHHHHHHHHhcc-
Confidence 4478999999999999999999999999975321 121 11 22222 256666777 44455444333211
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||+|.....|..||+|+++|....+
T Consensus 206 ---~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af~d 240 (583)
T TIGR00459 206 ---VDRYYQIARCFRDEDLRADRQPEFTQIDMEMSFMT 240 (583)
T ss_pred ---cCcEEEEcceeeCCCCCCCCCcccCcceeeecCCC
Confidence 24999999999999887778899999999998874
No 74
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=9.6e-06 Score=79.46 Aligned_cols=145 Identities=21% Similarity=0.295 Sum_probs=111.9
Q ss_pred CCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHH
Q 022115 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPS 152 (302)
Q Consensus 75 ~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~ 152 (302)
...+|.-+.+..+++.+.+.+.+.+....+||.++.+|.+-..++.... |.. ..+++|++.|. .+.|=|.-.+|
T Consensus 162 sGsrf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gt-gqlpkf~e~~y~v~~~---~~~LipTaEvp 237 (429)
T COG0172 162 SGSRFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGT-GQLPKFEEDLYKVEDP---DLYLIPTAEVP 237 (429)
T ss_pred CCCceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhcc-CCCCCCcccceEecCC---CEEEEecchhh
Confidence 5567777888999999999999999999999999999999999987543 432 46789999765 79999999999
Q ss_pred HHHHHHHhCCC-CCCCeEEEEEccccccCCCCCCC-----cc--ceeEeeEEEeccC-Ch-hHHHHHHHHHHHHHHHcCC
Q 022115 153 LARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRGR-----RR--EHYQWNMDIIGVP-AV-TAEAELISSIITFFKRIGI 222 (302)
Q Consensus 153 iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~~gr-----~r--Ef~Q~g~EiiG~~-~~-~aDaEvi~l~~eil~~lgl 222 (302)
++-+++...-. ..+|+|++-.++|||.|....|+ .| +|.-+-.-.|..+ .. ..--|++..+.++++.|+|
T Consensus 238 l~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeL 317 (429)
T COG0172 238 LTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELEL 317 (429)
T ss_pred hHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 99998876543 45899999999999999544332 33 4444433333332 22 2334789999999999999
Q ss_pred C
Q 022115 223 T 223 (302)
Q Consensus 223 ~ 223 (302)
+
T Consensus 318 P 318 (429)
T COG0172 318 P 318 (429)
T ss_pred C
Confidence 6
No 75
>PRK06462 asparagine synthetase A; Reviewed
Probab=98.28 E-value=5e-06 Score=79.61 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 84 PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 84 p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~-~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
-.-.++|..|.+.+++.|.++||.||+||++..... ... .|..-.-.++.+ |-.|+.+.|+.-.-.- -|+++.. .
T Consensus 27 ~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~-~g~~~~~~~~~~-~~~~~~~yL~~Spql~-k~ll~~g-~ 102 (335)
T PRK06462 27 RKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMG-LGSDLPVKQISI-DFYGVEYYLADSMILH-KQLALRM-L 102 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCC-ccccCCcccccc-ccCCCceeeccCHHHH-HHHHHhh-c
Confidence 345689999999999999999999999999976421 000 111100112222 2346777777554333 4444432 2
Q ss_pred CCCCCeEEEEEccccccCCCCC---CCccceeEeeEEEeccC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTR---GRRREHYQWNMDIIGVP 201 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~---gr~rEf~Q~g~EiiG~~ 201 (302)
-|+|+||+|||.|..+. -|..||+++.+|..+.+
T Consensus 103 -----~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d 139 (335)
T PRK06462 103 -----GKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD 139 (335)
T ss_pred -----CcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC
Confidence 39999999999997665 56789999999988853
No 76
>PLN02734 glycyl-tRNA synthetase
Probab=98.27 E-value=3.7e-06 Score=86.56 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=94.6
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc------------------------
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE------------------------ 127 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~------------------------ 127 (302)
+.-..|+.||.|.++.+++.|.+.+++.|- ..+..+|++|++.+..+|.. +|+.
T Consensus 95 YGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kA-SGHvd~F~D~mv~~~~~~~~~RADhlie 173 (684)
T PLN02734 95 YGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKA-SGHVDKFTDLMVKDEKTGTCFRADHLLK 173 (684)
T ss_pred cCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeee-cCCcccccceeeEcCCCCcEecchHHHH
Confidence 345779999999999999999999999995 55667999999999866543 2321
Q ss_pred --ccc--------------------------------------------------------ccEEEe-eC-CCCeEeeCC
Q 022115 128 --IRD--------------------------------------------------------QLYCFE-DR-GNRRVALRP 147 (302)
Q Consensus 128 --~~~--------------------------------------------------------~~~~f~-D~-~G~~l~LRp 147 (302)
+.. -||+.. .+ ++....|||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~~~~el~~~i~~~~ik~P~~g~~l~~~~~FNLMF~T~IGp~~~~~~YLRP 253 (684)
T PLN02734 174 DFCEEKLEKDLTISAEKAAELKDVLAVLDDLSAEELGAKIKEYGIKAPDTKNPLSDPYPFNLMFQTSIGPSGLSVGYMRP 253 (684)
T ss_pred HHHHhhhccccccchHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCCCCCCCCCCCeecccceeecccCcCCccceecc
Confidence 000 011111 11 134789999
Q ss_pred CChHH----HHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCC
Q 022115 148 ELTPS----LARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (302)
Q Consensus 148 DlT~~----iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~ 202 (302)
+.... |.|.+-.+. ..+|+-..+||+.||+| .|..| |.|||+|+.+|.|-.+.
T Consensus 254 ETAQGiFvnFk~l~~~~~--~klPF~~AQIGk~FRNEIsPR~gl~R~REF~qaEiE~Fv~P~ 313 (684)
T PLN02734 254 ETAQGIFVNFRDLYYYNG--GKLPFAAAQIGQAFRNEISPRQGLLRVREFTLAEIEHFVDPE 313 (684)
T ss_pred cccchheeeHHHHHHhcC--CCCCeeeeeccHhhhcccCcccceeeechhhhhhhheecCcc
Confidence 97654 677766554 35899999999999999 77777 89999999999997643
No 77
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=98.23 E-value=9.2e-06 Score=83.12 Aligned_cols=103 Identities=21% Similarity=0.397 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
.-.++|..+...+++.|...||.||+||++..... .|. .+ |.+.. ..|+.+.|+ ..+++......-..
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~----ega--~~--f~v~~~~~~~~~~~L~--qSpql~kq~l~~~g 208 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTKSTP----EGA--RD--YLVPSRVHPGKFYALP--QSPQLFKQLLMVAG 208 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeecCCC----CCC--cc--ceecccccCCceeecC--CCHHHHHHHHHhcc
Confidence 34568899999999999999999999999986431 121 11 32221 256667776 33445444333211
Q ss_pred CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||.|.....|.-||+|+++|.-+.+
T Consensus 209 ----~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af~~ 243 (588)
T PRK00476 209 ----FDRYYQIARCFRDEDLRADRQPEFTQIDIEMSFVT 243 (588)
T ss_pred ----cCceEEEeceeecCCCCCCcCcccccceeeecCCC
Confidence 24999999999999766666559999999999875
No 78
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=98.22 E-value=1.4e-05 Score=80.24 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHH--HHHHHhC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLA--RLVIQKG 161 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpDlT~~ia--R~~a~~~ 161 (302)
.-.++|..|...+++.|..+||.||+||++.... .|. ..+.|.. .+--+....|+- .+++. |.++. +
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~-----~Ga--~a~pF~t~~~~~~~~~yL~~--Spql~lk~l~v~-g 239 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIA-----GGA--AARPFITHHNALDIDLYLRI--APELYLKRLIVG-G 239 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCceeccC-----CCc--cceeeeeccccCCCceEecc--CHHHHHHHHHhc-c
Confidence 3456899999999999999999999999997431 121 2234443 233355556762 23333 33332 2
Q ss_pred CCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 162 ~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||+|....-|.-||+|+++|....+
T Consensus 240 -----~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~~d 274 (491)
T PRK00484 240 -----FERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAYAD 274 (491)
T ss_pred -----CCcEEEEecceecCCCCCCcCCceEEEEEEEecCC
Confidence 24999999999999776667889999999988763
No 79
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=98.21 E-value=1.1e-05 Score=80.27 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe--------eCCCCeEeeCCCChHHHHHH
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--------DRGNRRVALRPELTPSLARL 156 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~--------D~~G~~l~LRpDlT~~iaR~ 156 (302)
.-.++|..|...+++.|..+||.||+||++..... . | ..+.|.+. +--|+.+.|+--...-. +.
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~l-q~ 202 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDC--E--G---AGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYA-EA 202 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceeccCC--C--C---CCCceEeecccccccccccCCCcccccCHHHHH-HH
Confidence 34678999999999999999999999999986421 1 1 23456552 22356666664433322 33
Q ss_pred HHHhCCCCCCCeEEEEEccccccCCCC-CCCccceeEeeEEEeccC
Q 022115 157 VIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 157 ~a~~~~~~~~P~K~~yig~VfR~e~~~-~gr~rEf~Q~g~EiiG~~ 201 (302)
++. + --|+|+|++|||.|... .-|.-||+|+++|..+.+
T Consensus 203 l~~-g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~ 242 (450)
T PRK03932 203 YAM-A-----LGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAFAD 242 (450)
T ss_pred HHh-c-----cCCeEEeeeccccCCCCCccccccccccceEEeccC
Confidence 332 2 24999999999999753 335679999999988764
No 80
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=98.20 E-value=1.5e-05 Score=78.78 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHH-HHHhCCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARL-VIQKGKS 163 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~-~a~~~~~ 163 (302)
.-.++|..|...+++.|..+||.||+||++..... . | ..+.|.+ +..|+.+.|+-- +++... +...+
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~--e--g---~~~~f~v-~~~~~~~yL~~S--pql~~q~li~~g-- 198 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLVASAT--E--G---GTELFPI-TYFEREAFLGQS--PQLYKQQLMAAG-- 198 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCceecCCC--C--C---Ccceeee-EecCCcEEECcC--HHHHHHHHHhcc--
Confidence 45678999999999999999999999999974321 1 1 2334543 233556667633 333332 22222
Q ss_pred CCCCeEEEEEccccccCCCCCC-CccceeEeeEEEeccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||.|..... |.-||+|+++|..+.+
T Consensus 199 ---~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 234 (428)
T TIGR00458 199 ---FERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAFED 234 (428)
T ss_pred ---cCcEEEEecccccCCCCCccchheeeEeeeeeccCC
Confidence 2499999999999976643 5679999999988764
No 81
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=1.1e-05 Score=80.46 Aligned_cols=105 Identities=21% Similarity=0.332 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
+...+|.++...+++.+-.+||.+|+||+|.....= | ..+-++----+.|+-++|+ -.+++-+.+.+-.+
T Consensus 139 ~~l~lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPE----G--ARDfLVPSRv~~G~FYALP--QSPQlfKQLLMvsG-- 208 (585)
T COG0173 139 KNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPE----G--ARDFLVPSRVHPGKFYALP--QSPQLFKQLLMVAG-- 208 (585)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCeEeecCccccCCCc----c--ccccccccccCCCceeecC--CCHHHHHHHHHHhc--
Confidence 455788999999999999999999999999754220 2 1122221122468899998 45777777777543
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+|.+|||+|....-|.-||+|+++|+-=.+
T Consensus 209 --fdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF~~ 243 (585)
T COG0173 209 --FDRYYQIARCFRDEDLRADRQPEFTQIDLEMSFVD 243 (585)
T ss_pred --ccceeeeeeeecccccccccCCcceeEeEEeecCC
Confidence 44999999999999887778899999999986544
No 82
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=98.18 E-value=1.3e-05 Score=80.76 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|...||.||+||++.... .|. ...-|.. .+.-+..+.||----...-|+++..
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~~-----gGa--~a~pF~t~~~~~~~~~yL~~SpELylKrlivgG---- 251 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVGG---- 251 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEecC-----CCC--cccceecccccCCcceeeecCHHHHHHHHHhcc----
Confidence 456899999999999999999999999997531 122 1222322 1223455667643333344555442
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||+|....-|.-||+++.+|..+.+
T Consensus 252 --~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 286 (505)
T PRK12445 252 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD 286 (505)
T ss_pred --CCcEEEEehhccCCCCCCCcCcccceeeeeeecCC
Confidence 23999999999999776667889999999998764
No 83
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=98.15 E-value=2.2e-05 Score=77.83 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
.-.++|..+...+++.|..+||.||+||++..... .| ..+.|.+ +--|+.+.|+--.-.- .+.++..+
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~----eg---~~~~f~~-~~~~~~~~L~~Spql~-~q~l~~~g--- 201 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGT----EG---GAELFPI-DYFEKEAYLAQSPQLY-KQMMVGAG--- 201 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccccCC----CC---CcceEeE-EecCCceEecCCHHHH-HHHHHhcC---
Confidence 45679999999999999999999999999953211 11 1234554 3346677776443222 23333222
Q ss_pred CCCeEEEEEccccccCCCCCC-CccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|..... |.-||+|+++|..+.+
T Consensus 202 --~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~ 237 (437)
T PRK05159 202 --FERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFID 237 (437)
T ss_pred --CCcEEEEeceeeCCCCCCcccchhhheeeeeeeecc
Confidence 2399999999999976644 5679999999987765
No 84
>PLN02903 aminoacyl-tRNA ligase
Probab=98.13 E-value=2.7e-05 Score=80.12 Aligned_cols=103 Identities=21% Similarity=0.409 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-cCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHHHHhC
Q 022115 85 EDMRLRNWLFHNFQEVSRL-FGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLVIQKG 161 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~-~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~~a~~~ 161 (302)
.-.++|..+...+++.|.. .||.||+||++..... .|. .. |.... ..|..+.|+ ..+++......-.
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~----eGa---rd-f~v~~~~~~g~~y~L~--qSPQlykQ~Lm~~ 270 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTP----EGA---RD-YLVPSRVQPGTFYALP--QSPQLFKQMLMVS 270 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCC----CCC---cc-cEEeeecCCCcccccC--CCHHHHHHHHHhc
Confidence 3457899999999999996 9999999999975432 121 11 21111 246666676 3344544433321
Q ss_pred CCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 162 KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 162 ~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
. --|+|+||+|||.|..+..|.-||+|+++|.-+.+
T Consensus 271 G----~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf~d 306 (652)
T PLN02903 271 G----FDRYYQIARCFRDEDLRADRQPEFTQLDMELAFTP 306 (652)
T ss_pred c----CCcEEEEehhhccCCCCCCcccceeeeeeeecCCC
Confidence 1 24999999999999777777789999999988874
No 85
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=98.12 E-value=2.2e-05 Score=81.51 Aligned_cols=105 Identities=20% Similarity=0.320 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
.-.++|..+...+++.|..+||.||+||++..... .|. ..-++...-..|..++|+ ..+++......-..
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~----eGA--r~~~~p~~~~~~~~y~L~--qSPQlykq~lm~~G-- 223 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTP----EGA--RDYLVPSRIHPKEFYALP--QSPQLFKQLLMIAG-- 223 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC----CCC--cceEEeeecCCCcceecC--CCHHHHHHHHHhcc--
Confidence 45578999999999999999999999999985321 121 111111111245566666 33455444433211
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+|++|||.|.....|.-||+|+++|.-+.+
T Consensus 224 --~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af~d 258 (706)
T PRK12820 224 --FERYFQLARCFRDEDLRPNRQPEFTQLDIEASFID 258 (706)
T ss_pred --CCcEEEEechhcCCCCCCCcCccccccceeeccCC
Confidence 34999999999999776667789999999988864
No 86
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=98.08 E-value=2.9e-05 Score=79.32 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|...||.||+||++.... .|. ...-|... ..-+..+.||----...-|+++.-
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~-----GGA--~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG---- 320 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLVA-----GGA--NARPFITHHNDLDLDLYLRIATELPLKMLIVGG---- 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccC-----Ccc--cceeEEecccCCCcceEEeecHHHHHHHHHHhC----
Confidence 456899999999999999999999999998651 122 11222211 123455667633333455555542
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|.....|.-||+++.++..+.+
T Consensus 321 --~~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay~d 355 (585)
T PTZ00417 321 --IDKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAYAD 355 (585)
T ss_pred --CCCEEEEcccccCCCCCCCccceeeeeeeeeecCC
Confidence 23999999999999766667789999999988753
No 87
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=98.08 E-value=3.1e-05 Score=79.73 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D-~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|...||.||+||+|.... ++ ...+.|.... ..+..+.||----...-|.++..
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~------~g-a~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG---- 300 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVA------SG-ANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGG---- 300 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccC------CC-CCccceEeecccCCCCEEecCChHHHHHHHhhcc----
Confidence 457899999999999999999999999995421 11 1234454422 12445556633222333444332
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|++|+|||+|....-|.-||+++++|..+.+
T Consensus 301 --~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 301 --MERIYEIGKVFRNEDADRSHNPEFTSCEFYAAYHT 335 (659)
T ss_pred --cCCEEEEeceecCCCCCCCccccccceeeeeecCC
Confidence 24999999999999776667889999999988764
No 88
>PLN02502 lysyl-tRNA synthetase
Probab=98.05 E-value=2.5e-05 Score=79.34 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|...||.||+||++.... .|. ....|... +.-+..+.||----...=|+++..
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g---- 296 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNMIA-----GGA--AARPFVTHHNDLNMDLYLRIATELHLKRLVVGG---- 296 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeeccC-----CCc--cccceeeecccCCcceeeecCHHHHHHHHHHhc----
Confidence 446899999999999999999999999997532 121 22334332 233566777643333333444442
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|....-|.-||+++.+|....+
T Consensus 297 --~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~~d 331 (553)
T PLN02502 297 --FERVYEIGRQFRNEGISTRHNPEFTTCEFYQAYAD 331 (553)
T ss_pred --cCCEEEEcCeeeCCCCCCccccceeehhhhhhcCC
Confidence 23999999999999776667789999999988763
No 89
>PLN02850 aspartate-tRNA ligase
Probab=98.04 E-value=2.1e-05 Score=79.54 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-.+++..|...+++.|..+||.||+||++..... . | ..+.|.+ +-.|+...|+-- +++....+....
T Consensus 224 ifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~qS--pql~kq~li~~g--- 290 (530)
T PLN02850 224 IFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGAS--E--G---GSAVFRL-DYKGQPACLAQS--PQLHKQMAICGD--- 290 (530)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCC--c--c---ccceeee-ccCCcceecCCC--HHHHHHHHHHhc---
Confidence 4578899999999999999999999999954321 1 1 1235655 446788888743 344433322111
Q ss_pred CCeEEEEEccccccCCCCC-CCccceeEeeEEE-ecc
Q 022115 166 LPLKWFAVGQCWRYERMTR-GRRREHYQWNMDI-IGV 200 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~-gr~rEf~Q~g~Ei-iG~ 200 (302)
--|+|+||+|||.|.... -|.-||+|+++|+ |+.
T Consensus 291 -~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~ 326 (530)
T PLN02850 291 -FRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKE 326 (530)
T ss_pred -CCceEEEecccccCCCCCCccchhhccchhhhhhhc
Confidence 239999999999997533 3467999999994 553
No 90
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=98.01 E-value=3e-05 Score=77.98 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKS 163 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~ 163 (302)
.-.++|..|...+++.|..+||.||+||++.... .|. ..+.|... +.-|..+.||----...-|+++..
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~-----gga--~a~pF~t~~~~~~~~~yLriSpELylKrlivgG--- 239 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIP-----GGA--NARPFITHHNALDMDLYLRIAPELYLKRLIVGG--- 239 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCC-----CCc--cceeEEeecccCCCceEEecCHHHHHHHHHhCC---
Confidence 3456899999999999999999999999997542 121 22334332 123556667644323334554442
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|....-|.-||+++.+|....+
T Consensus 240 ---~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~~d 274 (496)
T TIGR00499 240 ---FEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAYAD 274 (496)
T ss_pred ---CCceEEEecceecCCCCCcccchhheeehhhhcCC
Confidence 23999999999999776667789999999987653
No 91
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=97.99 E-value=5.7e-05 Score=75.16 Aligned_cols=102 Identities=20% Similarity=0.185 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--------CCCCeEeeCCCChHHHHHHH
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--------RGNRRVALRPELTPSLARLV 157 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--------~~G~~l~LRpDlT~~iaR~~ 157 (302)
-.++|..|...+++.|..+||.||+||++..... . | ..+.|.+.. --|+...|+-- +++....
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~~~--e--g---~~~~F~v~~~~~~~~~~~~~~~~yL~~S--pql~lq~ 205 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDC--E--G---AGELFRVSTDGIDFSQDFFGKEAYLTVS--GQLYLET 205 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeecCC--C--C---CCCceEecccccccchhccCCccccccC--HHHHHHH
Confidence 4579999999999999999999999999975431 1 1 233454431 12455555533 2333222
Q ss_pred HHhCCCCCCCeEEEEEccccccCCCCC-CCccceeEeeEEEeccC
Q 022115 158 IQKGKSVSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDIIGVP 201 (302)
Q Consensus 158 a~~~~~~~~P~K~~yig~VfR~e~~~~-gr~rEf~Q~g~EiiG~~ 201 (302)
...+ --|+|++|+|||.|.... -|.-||+|+++|.-+.+
T Consensus 206 l~~g-----~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~~~ 245 (453)
T TIGR00457 206 YALA-----LSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAFAN 245 (453)
T ss_pred Hhhc-----ccCceEeeeccccCCCCCCcCcchhccceeeeecCC
Confidence 2222 249999999999997653 35679999999988764
No 92
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=97.95 E-value=0.00011 Score=74.79 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~-~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
.....++.+.+++.+...||.|+.|.+|...+. +.. .|-......+++.++ +.+.-+||+-+++.+.+.++.|. ..
T Consensus 358 ~~~~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~-~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~-~~ 435 (552)
T PRK09616 358 LHPIEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEK-MNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNK-HR 435 (552)
T ss_pred CChHHHHHHHHHHHHHhCCcceeccceEechHHHHHH-hCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhcc-CC
Confidence 344566788899999999999999999987754 432 222111136778776 67788999999999999999987 45
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
..++|+|.+|+||+.+..+...+.|..+.++-+.|.+.. -.++-.++..++..+|+
T Consensus 436 ~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~~~d--f~dlKg~ve~ll~~lgi 491 (552)
T PRK09616 436 EYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHSEAS--FTEIKSVVQALLRELGI 491 (552)
T ss_pred CCCeeEEEeeEEEecCCccccCcchhhEEEEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence 679999999999987532222467999999989996322 24667777788888886
No 93
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=3.2e-05 Score=76.17 Aligned_cols=117 Identities=20% Similarity=0.354 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..+...+++.| ..+||.+|+||++.... -|.. .+-++---.+.|.-++|.- .-.++-.++...+
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtLFkrT-----PgGA-~EFvVPtr~~~g~FYaLpQ-SPQQfKQlLMvsG--- 246 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTLFKRT-----PGGA-REFVVPTRTPRGKFYALPQ-SPQQFKQLLMVSG--- 246 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcchhccC-----CCcc-ceeecccCCCCCceeecCC-CHHHHHHHHHHhc---
Confidence 3467888888888888 47899999999996432 2221 2223322334588888862 2234444444443
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHH
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~ 218 (302)
--|+|++++|||+|....-|.-||+|+++|.-=.+.. +++.++.+.+.
T Consensus 247 --idrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF~~~~----dim~liEdll~ 294 (628)
T KOG2411|consen 247 --IDRYYQIARCFRDEDLRADRQPEFTQVDMEMSFTDQE----DIMKLIEDLLR 294 (628)
T ss_pred --hhhHHhHHhhhcccccCcccCCcceeeeeEEeccCHH----HHHHHHHHHHH
Confidence 4499999999999977777888999999998765432 44455544443
No 94
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=1.2e-05 Score=76.44 Aligned_cols=161 Identities=17% Similarity=0.232 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhh-----hccc--cccccEEEeeCC---------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRK-----AGEE--IRDQLYCFEDRG--------------------- 139 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~-----~g~~--~~~~~~~f~D~~--------------------- 139 (302)
.-.-+|++.++++|-..||.|+-|--+-...-|+-. ..+. -...+|-+.|+.
T Consensus 212 HPLmKvR~eFRqiF~emGFsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~~rVk~vH~~G~ 291 (483)
T KOG2784|consen 212 HPLMKVREEFRQIFFEMGFSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYLERVKAVHEQGG 291 (483)
T ss_pred chHHHHHHHHHHHHHHccccccccccchhhccccchhhcCcccCCccccccceEecChhhcccCCHHHHHHHHHHHhcCC
Confidence 345688899999999999999988665543322100 0010 012344443321
Q ss_pred --------------CCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhH
Q 022115 140 --------------NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTA 205 (302)
Q Consensus 140 --------------G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~a 205 (302)
-+..+||-..|.--||++-+..+..-.|.|+|.|.+|||+|.....+.-||+|+.--|.+..-..
T Consensus 292 ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDaTHLAEFHQVEGviad~gltL- 370 (483)
T KOG2784|consen 292 YGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDATHLAEFHQVEGVIADKGLTL- 370 (483)
T ss_pred cCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccchHHHHHHhhhceeeecCCCcH-
Confidence 23678999999999999887665556799999999999999888889999999977666654333
Q ss_pred HHHHHHHHHHHHHHcCCCCC-----------------------ceEEEeCChHHHH-HHHHhCCCChhh
Q 022115 206 EAELISSIITFFKRIGITAS-----------------------DVGFRISSRKVLQ-EVLRCHSIPEHL 250 (302)
Q Consensus 206 DaEvi~l~~eil~~lgl~~~-----------------------~~~I~igh~~il~-~il~~~gl~~~~ 250 (302)
..+|.++.+.+.++|++.- ...|++|+.+.++ .++...|+|.+.
T Consensus 371 -gdLig~l~~ff~~lg~tnlrfKPaynpYtepsmeif~yh~gl~kwvEvgnSg~frPeml~pMGLp~Dv 438 (483)
T KOG2784|consen 371 -GDLIGILMEFFTKLGATNLRFKPAYNPYTEPSMEIFSYHHGLFKWVEVGNSGMFRPEMLLPMGLPMDV 438 (483)
T ss_pred -HHHHHHHHHHHhccCCccccccCCCCCCCCceeEEEEeccccceEEEEcCCCCCCHhHhhccCCCccc
Confidence 5789999999999997631 2378899988887 677888988864
No 95
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=97.91 E-value=5e-05 Score=77.16 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-.+++..|...+++.|...||.||+||.|..... . | ..+.|.+ +--|+...|+-- +++....+..+.
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~--e--g---ga~~F~v-~yf~~~~~L~qS--pql~kq~li~~g--- 278 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPS--E--G---GANVFKL-EYFNRFAYLAQS--PQLYKQMVLQGD--- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCC--C--c---ccccccc-ccCCCCeecCCC--HHHHHHHHHhcC---
Confidence 4578899999999999999999999999975431 1 1 1234544 334677777643 444444433221
Q ss_pred CCeEEEEEccccccCCCCC-CCccceeEeeEEE-ec
Q 022115 166 LPLKWFAVGQCWRYERMTR-GRRREHYQWNMDI-IG 199 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~-gr~rEf~Q~g~Ei-iG 199 (302)
--|+|+||+|||.|.... -|.-||+|+++|+ |+
T Consensus 279 -~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~ 313 (550)
T PTZ00401 279 -VPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRIN 313 (550)
T ss_pred -CCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhc
Confidence 249999999999997643 3567999999986 44
No 96
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.76 E-value=9.3e-05 Score=80.71 Aligned_cols=103 Identities=19% Similarity=0.213 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|..+||.||+||++...+ |+ ...+.|.+. +.-+..+.||----.-.-|.++.-
T Consensus 769 ~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~------gG-a~a~pF~t~~~~~~~~~yLriSPELylKrLivgG---- 837 (1094)
T PRK02983 769 LLRARSAVVRAVRETLVARGFLEVETPILQQVH------GG-ANARPFVTHINAYDMDLYLRIAPELYLKRLCVGG---- 837 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccC------CC-cccceeEeeecCCCccchhhcChHHHHHHHHhcc----
Confidence 346889999999999999999999999997432 21 122345331 223444555432222334444332
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|....-|.-||+++.+|.-..+
T Consensus 838 --~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 838 --VERVFELGRNFRNEGVDATHNPEFTLLEAYQAHAD 872 (1094)
T ss_pred --cCceEEEcceecCCCCCCCccccccchhhhhhcCC
Confidence 24999999999999776667889999999988753
No 97
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00026 Score=68.91 Aligned_cols=145 Identities=18% Similarity=0.303 Sum_probs=106.9
Q ss_pred CCCCCccCC--hHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCCh
Q 022115 75 PPKGTRDFP--PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 75 ~p~G~~d~l--p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
-..|-+-|+ ...+.+-..+.+.-.+....+||.++.||.+...+++... |. ..+.+.|..+|.+ ...+|=..--
T Consensus 171 ~vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~c-g~~~~~d~~~~y~ld~~-~~~~LiaTaE 248 (455)
T KOG2509|consen 171 KVSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKC-GQLPRFDEEQYYVLDGG-DEKYLIATAE 248 (455)
T ss_pred hcccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHh-ccCcCCCcceEEeecCC-ccceeEeecc
Confidence 345666543 4677788888999999999999999999999999998764 32 2356778888864 5667777777
Q ss_pred HHHHHHHHHhCC-CCCCCeEEEEEccccccCCCCCCC-----cc--ceeEeeEEEeccCCh----hHHHHHHHHHHHHHH
Q 022115 151 PSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGR-----RR--EHYQWNMDIIGVPAV----TAEAELISSIITFFK 218 (302)
Q Consensus 151 ~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~gr-----~r--Ef~Q~g~EiiG~~~~----~aDaEvi~l~~eil~ 218 (302)
.|+|-+.+...- ..++|+|+.-.++|||.|....|+ +| +|. -+|.|...++ ..--|+|....++++
T Consensus 249 ~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~--KVE~Fvit~Pe~S~~~~eEmi~~~eef~q 326 (455)
T KOG2509|consen 249 QPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFE--KVEQFVITGPEDSWEMLEEMINNQEEFYQ 326 (455)
T ss_pred chhhhhhcccccccccCceeeeehhHHHHHHhhhcccccccceeeeeee--eeEEEEecCcchhHHHHHHHHHHHHHHHH
Confidence 899988876543 347899999999999998533332 33 555 4555554332 333588999999999
Q ss_pred HcCCC
Q 022115 219 RIGIT 223 (302)
Q Consensus 219 ~lgl~ 223 (302)
.|||+
T Consensus 327 sLgip 331 (455)
T KOG2509|consen 327 SLGLP 331 (455)
T ss_pred HhCCc
Confidence 99996
No 98
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=97.69 E-value=0.00045 Score=70.51 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchH
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d 118 (302)
-+++|..+...+++.|..+||.+|+||++...+
T Consensus 214 vlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 214 VIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 568999999999999999999999999997654
No 99
>PLN02221 asparaginyl-tRNA synthetase
Probab=97.69 E-value=0.00046 Score=70.44 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchH
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA 118 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d 118 (302)
-.++|..+...+++.|..+||.+|+||.|-..+
T Consensus 170 i~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s~ 202 (572)
T PLN02221 170 VARIRNALAFATHSFFQEHSFLYIHTPIITTSD 202 (572)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeecccc
Confidence 457899999999999999999999999997543
No 100
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=97.65 E-value=0.00023 Score=70.35 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=83.3
Q ss_pred CCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCC-CCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHH
Q 022115 140 NRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (302)
Q Consensus 140 G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~-~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~ 218 (302)
-..++||..+|+...|.+..-....+.|.|+|.+|+|||++. ....+..+|+|+.+=++|.+-.. .++..++..+++
T Consensus 180 s~~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf--~DLKgvLe~LLr 257 (533)
T TIGR00470 180 STTLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSV--DDGKAVAEGLLA 257 (533)
T ss_pred hhCcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCH--HHHHHHHHHHHH
Confidence 457899999999888877752222457999999999999984 45578999999999999987554 588889999999
Q ss_pred HcCCC-----CC-c---------------------eEEEeCChHHHH-HHHHhCCCChh
Q 022115 219 RIGIT-----AS-D---------------------VGFRISSRKVLQ-EVLRCHSIPEH 249 (302)
Q Consensus 219 ~lgl~-----~~-~---------------------~~I~igh~~il~-~il~~~gl~~~ 249 (302)
.+|.. +. . -.++|+..+++. .+|+.+|++..
T Consensus 258 ~LG~~~vRFRPsekrskyYFPFTEaEVdV~~~k~~gWiEIgG~GmVhPeVL~~~GId~P 316 (533)
T TIGR00470 258 QFGFTKFRFRPDEKKSKYYIPETQTEVYAYHPKLGEWIEVATFGVYSPIALAKYNIDVP 316 (533)
T ss_pred HhCCceEEeccCcCCCCCcCCCceEEEEEEccCCCceEEEEeccccCHHHHHHcCCCCc
Confidence 99864 00 0 036677777776 88888888764
No 101
>PLN02603 asparaginyl-tRNA synthetase
Probab=97.60 E-value=0.00046 Score=70.36 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-------CCCe-EeeC----------C-
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------GNRR-VALR----------P- 147 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-------~G~~-l~LR----------p- 147 (302)
.++|..+...+++.|..+||.+|+||+|...+. . | ..++|.+..- .|.. ..|+ .
T Consensus 226 ~RiRS~i~~air~ff~~~gF~eV~TPiLt~s~~--E--G---A~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~d 298 (565)
T PLN02603 226 ARVRNALAYATHKFFQENGFVWVSSPIITASDC--E--G---AGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQD 298 (565)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCeecccCC--C--c---cccCceeeeccccccccccccccccccCcccccccchh
Confidence 478899999999999999999999999975432 1 1 1344544210 0110 1111 0
Q ss_pred ------CChHH--HH-HHHHHhCCCCCCCeEEEEEccccccCCCCCC-CccceeEeeEEEecc
Q 022115 148 ------ELTPS--LA-RLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGV 200 (302)
Q Consensus 148 ------DlT~~--ia-R~~a~~~~~~~~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~ 200 (302)
=+|++ +- ..++. . =-|+|++|++||.|..... |.-||||+++|+-..
T Consensus 299 yF~~~~~LtvS~QL~~E~~~~-~-----l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 299 FFGKPAFLTVSGQLNGETYAT-A-----LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 355 (565)
T ss_pred hhCcceeeccCchHHHHHHHh-c-----ccceEEEecceeCCCCCCccccccceeeeeeeecC
Confidence 11111 11 11111 1 2489999999999977543 568999999998654
No 102
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=97.55 E-value=0.00051 Score=60.66 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCCeE
Q 022115 91 NWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLK 169 (302)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K 169 (302)
..+.+.+++.+...||.|+.|.+|...+.... .+.. ....+++.++ +...=+||+-+.+++.+.++.|......|+|
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~-~~~~-~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~ 80 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEAEL-FDGG-LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLR 80 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHHHh-ccCC-CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEe
Confidence 45677889999999999999999977644332 2211 2246788887 6677799999999999999998766568999
Q ss_pred EEEEccccccCCCCCCCccceeEeeEEEeccCC--------hhHH-HHHHHHHHHHHHHcCC
Q 022115 170 WFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGI 222 (302)
Q Consensus 170 ~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~--------~~aD-aEvi~l~~eil~~lgl 222 (302)
+|.+|+||.... . .++|..-+++-+-|... ...| .++-.++..+++.+|+
T Consensus 81 lFEiG~vf~~~~-~--~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l~~ 139 (198)
T cd00769 81 LFEIGRVFLKDE-D--GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRALGI 139 (198)
T ss_pred EEEeEeEEecCC-C--CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHcCC
Confidence 999999997542 1 34577777777888531 0123 3556677777788875
No 103
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00088 Score=65.90 Aligned_cols=101 Identities=18% Similarity=0.302 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-++++..+...+++.|...||.+|.||.+...+.= | ..++|++. --++..-|- ..+++-..++...
T Consensus 133 v~kirs~i~~a~~eff~~~gF~eV~tP~i~~~~~E----G---g~elF~v~-yf~~~a~Lt--qS~QLyke~~~~a---- 198 (435)
T COG0017 133 VFKIRSSILRAIREFFYENGFTEVHTPIITASATE----G---GGELFKVD-YFDKEAYLT--QSPQLYKEALAAA---- 198 (435)
T ss_pred HHhHHHHHHHHHHHHHHhCCcEEecCceEeccCCC----C---CceeEEEe-ecCcceEEe--cCHHHHHHHHHHH----
Confidence 45789999999999999999999999999865421 1 23566552 122222221 1223433333321
Q ss_pred CCeEEEEEccccccCCCCCC-CccceeEeeEEEeccC
Q 022115 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~ 201 (302)
--|+|.+|++||.|...-. |..|||++++|+-..+
T Consensus 199 -l~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 199 -LERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred -hCceEEecCceecCCCCCcchhhhHheecceeccCc
Confidence 2399999999999965544 4789999999998876
No 104
>PLN02532 asparagine-tRNA synthetase
Probab=97.47 E-value=0.00097 Score=68.60 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccch
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE 117 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~ 117 (302)
-.++|..+...+++.|..+||.+|+||+|...
T Consensus 234 ilRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 234 VTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 45799999999999999999999999999654
No 105
>PLN02788 phenylalanine-tRNA synthetase
Probab=97.40 E-value=0.0024 Score=62.48 Aligned_cols=133 Identities=13% Similarity=0.130 Sum_probs=93.7
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHc---CCeeec--CCcccchHHhhhhh---ccc--cccccEEEeeCCCCeEeeCCCC
Q 022115 80 RDFPPEDMRLRNWLFHNFQEVSRLF---GFEEVD--FPVLESEALFIRKA---GEE--IRDQLYCFEDRGNRRVALRPEL 149 (302)
Q Consensus 80 ~d~lp~~~~~~~~i~~~l~~vf~~~---Gy~eI~--tP~le~~d~~~~~~---g~~--~~~~~~~f~D~~G~~l~LRpDl 149 (302)
+.+......-...+.+.++++|... ||..++ .|+.+.+.-|..-. .+. -...+|-+- ...+||...
T Consensus 60 ~~l~~~~~HPl~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~----~~~lLRTHT 135 (402)
T PLN02788 60 MQLHRRPDHPLGILKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVD----AQTVLRCHT 135 (402)
T ss_pred ccCCCCCCChHHHHHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEec----CCccccCCC
Confidence 3455556667788889999999887 999998 56665544443210 111 124466662 358999999
Q ss_pred hHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC------C----hhHHHHHHHHHHHHHHH
Q 022115 150 TPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP------A----VTAEAELISSIITFFKR 219 (302)
Q Consensus 150 T~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~------~----~~aDaEvi~l~~eil~~ 219 (302)
|+--+|++... .| |++..|+|||++.....+.-+|+|+..=+++.. + ...-+++..++..++..
T Consensus 136 Sa~q~~~l~~~-----~~-~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~~~~dLKg~Le~l~~~ 209 (402)
T PLN02788 136 SAHQAELLRAG-----HT-HFLVTGDVYRRDSIDATHYPVFHQMEGVRVFSPEEWEASGLDGTDLAAEDLKKTLEGLARH 209 (402)
T ss_pred cHHHHHHHHhC-----CC-cEEEEeeEeecCCCCcccCccceeEEEEEEecccccccccccccccCHHHHHHHHHHHHHH
Confidence 99999988863 13 999999999999888889999999976666521 1 12345677777777777
Q ss_pred c-CC
Q 022115 220 I-GI 222 (302)
Q Consensus 220 l-gl 222 (302)
+ |+
T Consensus 210 lfg~ 213 (402)
T PLN02788 210 LFGD 213 (402)
T ss_pred hcCC
Confidence 7 65
No 106
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0032 Score=62.63 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
..|.+|.+.+++.+...||-||+||++.+. .|+. ..+-|... +.-.-.+.||=-...-+-|.+..-
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i------~GGA-~ArPF~ThhNald~dlyLRIApELyLKRliVGG------ 247 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPI------PGGA-AARPFITHHNALDMDLYLRIAPELYLKRLIVGG------ 247 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEecccccccc------CCCc-ccccceeeecccCCceEEeeccHHHHHHHHhcC------
Confidence 577888999999999999999999999864 2332 23344332 223455777766556677777652
Q ss_pred CeEEEEEccccccCCCCCCCccceeEeeE
Q 022115 167 PLKWFAVGQCWRYERMTRGRRREHYQWNM 195 (302)
Q Consensus 167 P~K~~yig~VfR~e~~~~gr~rEf~Q~g~ 195 (302)
=-|+|.||++||+|.....|.-||+-+-+
T Consensus 248 ~erVfEIgr~FRNEGid~tHNPEFTmlE~ 276 (502)
T COG1190 248 FERVFEIGRNFRNEGIDTTHNPEFTMLEF 276 (502)
T ss_pred chhheeeccccccCCCccccCcchhhHHH
Confidence 23999999999999777767777776543
No 107
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=96.75 E-value=0.015 Score=59.31 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
....+.+.+.+++.+...||.|+.|-+|...+......+-. ..+.+++.++ +...=+||+-+.+++.+.++.|. ...
T Consensus 361 ~~~~~~~~~~ir~~L~~~Gf~E~itysf~s~~~~~~~~~~~-~~~~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~-~~~ 438 (551)
T TIGR00471 361 LKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKRMRIE-DNNDVKVANPKTLEYTIVRTSLLPGLLETLSENK-HHE 438 (551)
T ss_pred cChHHHHHHHHHHHHHhCCceeeccceEccHHHHHHHhccC-CCCcEEeCCCCchhhhHhHhhhHHHHHHHHHhcc-cCC
Confidence 34456778888999999999999998887764321122211 2245778887 66777999999999999999987 557
Q ss_pred CCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 166 LPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
.|+|+|.+|+||.......-..+++...++-+.|... .-.++-.++..++..+|++
T Consensus 439 ~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g~~~--df~d~Kg~ve~ll~~l~i~ 494 (551)
T TIGR00471 439 LPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEA--NFNEIKSIVAALARELGIE 494 (551)
T ss_pred CCeeEEEEEEEEEcCCccccccceeeEEEEEEECCCC--CHHHHHHHHHHHHHHcCCc
Confidence 8999999999996432111022334677777777421 1235666777777888763
No 108
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.0027 Score=62.46 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
....|.+|...+++.+...||-||+||++.-. .|... .+-|-..+. -+..+.||=---.=+-+++..-
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i------aGGA~-AkPFIT~hndldm~LylRiAPEL~lK~LvVGG---- 292 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI------AGGAT-AKPFITHHNDLDMDLYLRIAPELYLKMLVVGG---- 292 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc------cCccc-cCceeecccccCcceeeeechHHHHHHHHhcc----
Confidence 44688999999999999999999999999642 34332 333333222 2344556532222344554432
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeE
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNM 195 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~ 195 (302)
--|+|.||++||+|.....+.-||+-|.+
T Consensus 293 --ldrVYEIGr~FRNEGIDlTHNPEFTTcEf 321 (560)
T KOG1885|consen 293 --LDRVYEIGRQFRNEGIDLTHNPEFTTCEF 321 (560)
T ss_pred --HHHHHHHHHHhhhcCcccccCCCcchHHH
Confidence 34999999999999777777778887665
No 109
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=96.35 E-value=0.022 Score=58.74 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=99.6
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhhhccccc-cccEEEeeC-CCCeEe
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRKAGEEIR-DQLYCFEDR-GNRRVA 144 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~-~~~~~g~~~~-~~~~~f~D~-~G~~l~ 144 (302)
.++++...|.... ........++.+.+++.+...||.|+.|-+|...+. +.. .+.... ....++.++ +.+.-+
T Consensus 380 ydni~~~~P~~~~---~g~~~~~~~~~~~iR~~l~~~Gf~Ev~t~sl~s~~~~~~~-~~~~~~~~~~v~I~NP~s~e~~v 455 (597)
T PLN02265 380 YNNIPKRKPKSMT---VGKQQPLNQFSDLLRAEVAMAGFTEVLTWILCSHKENFAM-LNREDDGNSAVIIGNPRSADFEV 455 (597)
T ss_pred cccCCccCCCccc---CCCCCHHHHHHHHHHHHHHHCCceeeeceeeCChHHHHHh-hcCCccCCceEEECCCcchhHHH
Confidence 3335555555321 113344677788899999999999999988877644 432 221111 135777776 566778
Q ss_pred eCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCc-cceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRR-REHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 145 LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~-rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
||+.+.+.+...++.|.+. +.|+|+|.+|.||-.+.. .... +|...+++=+.|.... -.++-.++..+|..+|+.
T Consensus 456 lRtSLlPgLL~~l~~N~~~-~~p~klFEiG~V~~~~~~-~~~~~~e~~~la~~~~g~~~~--f~~ikg~le~ll~~l~i~ 531 (597)
T PLN02265 456 VRTSLLPGLLKTLGHNKDA-PKPIKLFEVSDVVLLDES-KDVGARNSRRLAALYCGTTSG--FEVIHGLVDRIMEVLGIP 531 (597)
T ss_pred HHHhhHHHHHHHHHHhhcC-CCCeeEEEeEeEEecCCc-ccCCcchhhEEEEEEECCCCC--HhhHHHHHHHHHHHcCCc
Confidence 9999999999999988754 459999999999965421 1111 5666778877775311 235666777888888874
No 110
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.00 E-value=0.0033 Score=62.03 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=92.8
Q ss_pred CCCCCccCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc------c-----ccc-----------
Q 022115 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE------I-----RDQ----------- 131 (302)
Q Consensus 75 ~p~G~~d~lp~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~------~-----~~~----------- 131 (302)
-..|..||.|.+..+...|.+.+++.|- .-+--||+.|++.|++++.. +|+. + ..+
T Consensus 34 GVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~Vlka-SGHVdkF~D~mvkD~ktGecfRADHLvk~~ 112 (599)
T KOG2298|consen 34 GVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKA-SGHVDKFADWMVKDEKTGECFRADHLVKDA 112 (599)
T ss_pred CcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhc-ccchhhhhHHHhcCccccceehhhHHHHHH
Confidence 4678899999999999999999999994 67889999999999877643 2431 0 000
Q ss_pred ---------------------------------------------------------cEEE-eeC-CCCeEeeCCCChH-
Q 022115 132 ---------------------------------------------------------LYCF-EDR-GNRRVALRPELTP- 151 (302)
Q Consensus 132 ---------------------------------------------------------~~~f-~D~-~G~~l~LRpDlT~- 151 (302)
||.. +.+ +|-.--|||+...
T Consensus 113 ~~rl~~~~~~~~~~e~e~iLa~~d~~s~~el~~~~~kyni~sP~tgn~Ls~p~~FNLMF~T~IGpsG~~kgyLRPETAQG 192 (599)
T KOG2298|consen 113 EERLKKKASAEVKAEMEKILAKLDGYSGQELGELISKYNIKSPVTGNDLSEPRQFNLMFETQIGPSGGLKGYLRPETAQG 192 (599)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCChHHHHHHHHhccCCCCCcCCCcCCCcccceeccccccCCCCcccccCcccccc
Confidence 1110 112 3345678998654
Q ss_pred ---HHHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCC
Q 022115 152 ---SLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPA 202 (302)
Q Consensus 152 ---~iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~ 202 (302)
.|-|++--|+. .+|+--.+||+.||+| .|..| |.|||+++.+|.|-.+.
T Consensus 193 ~FlNFkrlle~N~~--KlPFA~AqiG~~fRNEISpRsGLlRvrEF~maEIEHFvdP~ 247 (599)
T KOG2298|consen 193 QFLNFKRLLEFNQG--KLPFASAQIGKSFRNEISPRSGLLRVREFTMAEIEHFVDPL 247 (599)
T ss_pred ccccHHHHHHhcCC--CCcchHHHhchHhhhccCcccCceeEEEeehHHhhccCCCC
Confidence 36777766654 5899999999999998 55555 78999999999997643
No 111
>PRK07080 hypothetical protein; Validated
Probab=95.46 E-value=0.26 Score=46.82 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=107.2
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcC----CeeecCCcccchHHhhhhhcc--ccccccEEEe----------
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFG----FEEVDFPVLESEALFIRKAGE--EIRDQLYCFE---------- 136 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~G----y~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~---------- 136 (302)
+-+|.|..-++.. ....+.|.+.+.+++.++| ++++.-|.+.+.+.+.+. |- ..-..++.+.
T Consensus 30 ~~~~~g~~g~ygr-s~~fe~v~~~ld~~i~~lg~~~~~e~~~FPpl~~~~~~ek~-~Y~ksFP~l~~~V~~~~g~~~e~~ 107 (317)
T PRK07080 30 LLIPTGVDGLYGR-SGLFEDVVEALDALITRLGADQGAEVLRFPPVMSRAEFERS-GYLKSFPQLAGTVHSFCGNEAEHR 107 (317)
T ss_pred ceeccCCCccccc-cHHHHHHHHHHHHHHHHhccccCCceeeCCCCCCHHHHHhc-ChhhhCcccceeecCCCCCCHHHH
Confidence 5577777776654 4566777777788888787 999999999998877652 21 0111111111
Q ss_pred --------------eCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCC-CCCccceeEeeEEEeccC
Q 022115 137 --------------DRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 137 --------------D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~-~gr~rEf~Q~g~EiiG~~ 201 (302)
+..-..++|.|=.+.|+--.++..+.....-..+=-.|.|||+|... ..|..||.+-.+-.+|.+
T Consensus 108 ~ll~~~~~~~~~~~~l~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~ 187 (317)
T PRK07080 108 RLLACLDRGEDWTESQKPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEPSLDPARMQLFRMREYVRIGTP 187 (317)
T ss_pred HHHHHHHhcCchhhhcCCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCCCCCcHHHhheeeeEEEEecCH
Confidence 11234688999999998887776532111235556679999999543 226789999999999975
Q ss_pred ChhHHH--HHHHHHHHHHHHcCCCCCceEEEeCChHHH
Q 022115 202 AVTAEA--ELISSIITFFKRIGITASDVGFRISSRKVL 237 (302)
Q Consensus 202 ~~~aDa--Evi~l~~eil~~lgl~~~~~~I~igh~~il 237 (302)
....+. .-+..+.++.+.|||+ +.+++.|=-++
T Consensus 188 e~v~~~r~~w~e~~~~l~~~LgL~---~~ve~AnDPFF 222 (317)
T PRK07080 188 EQIVAFRQSWIERGTAMADALGLP---VEIDLANDPFF 222 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc---eeEeecCCccc
Confidence 543222 3477888889999996 88888774444
No 112
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=95.36 E-value=0.17 Score=54.11 Aligned_cols=125 Identities=18% Similarity=0.270 Sum_probs=86.9
Q ss_pred HHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEE
Q 022115 95 HNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAV 173 (302)
Q Consensus 95 ~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yi 173 (302)
+.+++.+...||.|+.|-+|...+.+.. .+-...+..+++.++ +-..=+||+-+.+++.+.++.|.+....++|+|.+
T Consensus 498 ~~~r~~L~~~Gf~Ev~tysl~s~~~~~~-~~~~~~~~~i~l~NPis~e~s~lR~SLlpgLL~~~~~N~~~~~~~~~lFEi 576 (798)
T TIGR00472 498 RKLRTLLVGLGLNEVITYSLVSSEKAEK-FNFPKLENLVEIKNPLSNERSVLRTSLLPSLLEVLAYNQNRKNKDVKIFEI 576 (798)
T ss_pred HHHHHHHHHCCCcEEeccccCCHHHHHh-hcCCCCCceEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCCCEeEEee
Confidence 5778899999999999999977644332 232211125778777 56667899999999999999987655679999999
Q ss_pred ccccccCCCCCCCccceeEeeEEEeccCC--------hhHH-HHHHHHHHHHHHHcCCC
Q 022115 174 GQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGIT 223 (302)
Q Consensus 174 g~VfR~e~~~~gr~rEf~Q~g~EiiG~~~--------~~aD-aEvi~l~~eil~~lgl~ 223 (302)
|.||..... . .+|....++=+.|... ...| .++-.++..++..+|+.
T Consensus 577 G~V~~~~~~--~-~~e~~~La~~~~g~~~~~~~~~~~~~~df~d~Kg~le~ll~~l~~~ 632 (798)
T TIGR00472 577 GKVFAKDGL--G-VKEQLRLAILISGEKNPSSWNHKEEKVDFYDLKGDVESLLELLGLS 632 (798)
T ss_pred ecccCCCCC--C-cchhhEEEEEEECCCCcccccCCCCcCChHHHHHHHHHHHHHcCCC
Confidence 999954321 1 5677777777777421 0122 34555666677777663
No 113
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=95.27 E-value=0.16 Score=50.67 Aligned_cols=104 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHc--------CCeeecC--CcccchHHhhhhh---ccc--cccccEEEeeCCCCeEeeCCCChH
Q 022115 87 MRLRNWLFHNFQEVSRLF--------GFEEVDF--PVLESEALFIRKA---GEE--IRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~--------Gy~eI~t--P~le~~d~~~~~~---g~~--~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
..-...+.+.|.++|... ||..++. |+...+.-|..-. .+. -....|-+- ...+||...++
T Consensus 41 ~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~NFD~Ln~P~dHPaR~~~DT~Yi~----~~~lLRTHTSa 116 (460)
T TIGR00469 41 DHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYIN----EQHLLRAHTSA 116 (460)
T ss_pred CCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhhhhhcCCCCCCcccCcccceEec----CCceeCCCCcH
Confidence 344567778888888876 8988887 8655555554311 111 124466562 35899999999
Q ss_pred HHHHHHHHhCCCCCCCeE--EEEEccccccCCCCCCCccceeEeeE
Q 022115 152 SLARLVIQKGKSVSLPLK--WFAVGQCWRYERMTRGRRREHYQWNM 195 (302)
Q Consensus 152 ~iaR~~a~~~~~~~~P~K--~~yig~VfR~e~~~~gr~rEf~Q~g~ 195 (302)
--.|.+...... ..|.| +...|.|||++.....++-.|+|+..
T Consensus 117 ~q~~~~~~~~~~-~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG 161 (460)
T TIGR00469 117 HELECFQGGLDD-SDNIKSGFLISADVYRRDEIDKTHYPVFHQADG 161 (460)
T ss_pred HHHHHHHhcccc-CCCcceeeEeecceeeCCCCccccCccceeeEE
Confidence 999988764321 24777 99999999999888889999999973
No 114
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=95.13 E-value=0.22 Score=53.19 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
.......+.+++.+...||.|+.|-+|...+.... .+.. ...+++.++ +.+.=+||+-+.+++.+.++.|.+....
T Consensus 487 ~~~~~~~~~ir~~L~~~Gf~Ev~tysf~~~~~~~~-~~~~--~~~i~l~NPis~e~~~lR~SLlp~LL~~~~~N~~~~~~ 563 (791)
T PRK00629 487 TEAQRLLRRLRRALAALGYQEVITYSFVSPEDAKL-FGLN--PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNLNRGNK 563 (791)
T ss_pred CHHHHHHHHHHHHHHHCCCcEEeccccCCHHHHHh-cCCC--CCeEEEeCCCchHHHHHHHhhHHHHHHHHHHHHhCCCC
Confidence 34455567889999999999999988876644332 2321 235677777 5667799999999999999998765567
Q ss_pred CeEEEEEccccccCCCCCCCccceeEeeEEEeccCC-------h-hHHHHHHHHHHHHHHHcCCC
Q 022115 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA-------V-TAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 167 P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~-------~-~aDaEvi~l~~eil~~lgl~ 223 (302)
++|+|.+|+||.... +.++|...+++=+-|... . ..-.++-.++..+|..+|+.
T Consensus 564 ~i~lFEiG~Vf~~~~---~~~~e~~~la~~~~g~~~~~~w~~~~~~df~~~Kg~le~ll~~l~~~ 625 (791)
T PRK00629 564 DVALFEIGRVFLPDG---DLPREPEHLAGVLTGNRVEESWGGKRPVDFFDLKGDVEALLEALGLP 625 (791)
T ss_pred CEeEEeeeeeeCCCC---CCCcchhEEEEEEECCCccccccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999996531 234566667777777321 0 11235556667777777763
No 115
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.063 Score=52.15 Aligned_cols=107 Identities=12% Similarity=0.166 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-------CCCeEeeCCCChHHHHH
Q 022115 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-------GNRRVALRPELTPSLAR 155 (302)
Q Consensus 83 lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-------~G~~l~LRpDlT~~iaR 155 (302)
+...+++|..+.....+.|..+||..|.||++...|- -| ..++|.+... -|+..-|.--.-..+--
T Consensus 128 ~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC----EG---aGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE~ 200 (446)
T KOG0554|consen 128 VGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC----EG---AGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLEA 200 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC----CC---CcceEEEEecCcccccccCCceEEEEeceehHHH
Confidence 3456789999999999999999999999999987642 12 2346655421 13333332222122222
Q ss_pred HHHHhCCCCCCCeEEEEEccccccCCCCCC-CccceeEeeEEEeccCCh
Q 022115 156 LVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAV 203 (302)
Q Consensus 156 ~~a~~~~~~~~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~~~ 203 (302)
+... =-|.|.+|+.||.|+.+.. +.-|||.+.+|+--.++.
T Consensus 201 ~a~~-------LsrvyTfgP~FRAEnS~tsRHLAEFwMlEaE~AF~~sl 242 (446)
T KOG0554|consen 201 MACA-------LSRVYTFGPTFRAENSHTSRHLAEFWMLEAELAFAESL 242 (446)
T ss_pred HHhh-------hcceEeeccceecccCCchhHHhhhhhhhhHHHHHHHH
Confidence 2211 2389999999999977654 468999999988776644
No 116
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.00 E-value=0.077 Score=52.11 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=108.1
Q ss_pred cccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCC----
Q 022115 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGN---- 140 (302)
Q Consensus 67 ~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G---- 140 (302)
...|+.+...+|+.-+=|-.+.+.+.|...+..-+++.|-+..-.|+|-+...+...-.+ ....++-.+.-.++
T Consensus 78 k~emieYydvsGcyilRP~s~aIWe~Iq~wfd~~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAwVTr~G~seLe 157 (551)
T KOG4163|consen 78 KGEMIEYYDVSGCYILRPWSYAIWEAIQDWFDAEIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAWVTRAGNSELE 157 (551)
T ss_pred hhhhheeecccceEEecchHHHHHHHHHHHHHHHHHHhccccceeeeecCHHHHhhhhhhhccCCcceEEEEecCCcccc
Confidence 347899999999999999999999999999999999999999999999998877643222 13445555543333
Q ss_pred CeEeeCCC----ChHHHHHHHHHhCCCCCCCeEEEEEccccccC--CCC-CCCcccee-EeeEEEeccCChhHHHHHHHH
Q 022115 141 RRVALRPE----LTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE--RMT-RGRRREHY-QWNMDIIGVPAVTAEAELISS 212 (302)
Q Consensus 141 ~~l~LRpD----lT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e--~~~-~gr~rEf~-Q~g~EiiG~~~~~aDaEvi~l 212 (302)
+.+++||. +-+.+++++-.+ +++|+|+=+--+|-|-| .|+ .-|.|||. |-|=-.+- ...+||-||+.+
T Consensus 158 epiaiRPTSETvmyp~yakWi~Sh---RDLPlkLNQW~nVvRWEfk~p~PFlRtrEFLWQEGHTAfa-t~~eA~eEvlqi 233 (551)
T KOG4163|consen 158 EPIAIRPTSETVMYPYYAKWIQSH---RDLPLKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHTAFA-TPEEAEEEVLQI 233 (551)
T ss_pred cceeeccCccceecHHHHHHHHhh---ccCchhhhhhhhheeeeccCCCcchhhhHHHHhcCcchhC-CHhHHHHHHHHH
Confidence 36799996 445678887665 46899999999999977 232 34778985 65543333 334577777554
Q ss_pred ---HHHHHHH
Q 022115 213 ---IITFFKR 219 (302)
Q Consensus 213 ---~~eil~~ 219 (302)
...+...
T Consensus 234 LdlYa~vy~e 243 (551)
T KOG4163|consen 234 LDLYARVYEE 243 (551)
T ss_pred HHHHHHHHHh
Confidence 4444443
No 117
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.50 E-value=0.11 Score=50.83 Aligned_cols=127 Identities=19% Similarity=0.265 Sum_probs=77.3
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCC-eEeeC
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNR-RVALR 146 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~-~l~LR 146 (302)
++.+++..|.--- -.++..-|+..+++.+...||.+|+||-+.-... -| ..++|++.=-++. -++=.
T Consensus 214 nRvlDLRtptnqA-----iFriq~gvc~~FRe~L~~kgF~EIhTpKli~asS----EG---GanvF~v~Yfk~~A~LAQS 281 (533)
T KOG0556|consen 214 NRVLDLRTPTNQA-----IFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASS----EG---GANVFRVSYFKQKAYLAQS 281 (533)
T ss_pred ceeeecccccchh-----eeehHHHHHHHHHHHHHhcCcceecccccccccC----CC---CceeEEEEeccCcchhhcC
Confidence 3446666654321 2357788999999999999999999999865421 12 3567776432222 23334
Q ss_pred CCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCC-CccceeEeeEEEeccCChhHHHHHHHHHHHHH
Q 022115 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVPAVTAEAELISSIITFF 217 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil 217 (302)
|.+--++| --+ .--|+|.||+|||.|.+.-- +..||.-.++|.-=. ..--||+.++.+.|
T Consensus 282 PQLyKQMa----I~g----df~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~---~hYhEVm~~i~~lf 342 (533)
T KOG0556|consen 282 PQLYKQMA----ICG----DFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFN---EHYHEVMDTIGELF 342 (533)
T ss_pred hHHHHHHH----Hhc----chhheeeecceeeccccchhhhhHHhhCcchhhHHH---HHHHHHHHHHHHHH
Confidence 44433333 211 14599999999999865432 467888777665322 12346666655554
No 118
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=94.27 E-value=0.29 Score=51.62 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
.....+...+.+++.+...||.|+.|-+|...+.+ ....+++.++ +-+.-+||+-+.+++...++.|.+..
T Consensus 396 ~~~~~~~~~~~ir~~L~~~Gf~Evitysf~s~~~~--------~~~~i~l~NPiS~e~s~lR~SLlpgLL~~~~~N~~r~ 467 (704)
T CHL00192 396 RLDIDYNTRDKIRSYLRNLGLTELIHYSLVKQESF--------SKNEIKLKNPLIKDYSTLRSSLLPGLIEAVQENLKQG 467 (704)
T ss_pred CCCHHHHHHHHHHHHHHhCCCceEecccccChhhc--------CCCcEEEeCCCchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33345667788899999999999999888665422 1235778877 66677999999999999999987665
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC---C------hhHHH-HHHHHHHHHHHHcCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP---A------VTAEA-ELISSIITFFKRIGI 222 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~---~------~~aDa-Evi~l~~eil~~lgl 222 (302)
..++|+|.+|+||-.... ..+|....++-+.|.. . ...|. ++-.++..++..+|+
T Consensus 468 ~~~~rlFEiG~Vf~~~~~---~~~e~~~la~~~~g~~~~~~~w~~~~~~~dF~d~Kg~le~ll~~l~i 532 (704)
T CHL00192 468 NSTLEGFEIGHVFNLDSS---SIIEETELAGGIFGGIDIRSSWSEKAQSLNWFEAKGIIENFFQKLNL 532 (704)
T ss_pred CCCEeEEEeeeeEcCCCc---cccccceEEEEEECCCcCccccCCCCCccCHHHHHHHHHHHHHHCCC
Confidence 689999999999954311 1356666777777742 1 11233 455577777788876
No 119
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=92.97 E-value=0.063 Score=51.98 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=54.5
Q ss_pred CCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCC-CCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHH
Q 022115 139 GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFF 217 (302)
Q Consensus 139 ~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~-~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil 217 (302)
....+.||..||...--.+..-....+.|+|+|.|.+|||+++ ....|.--++-+.+-+++.+-...+. -.++..+|
T Consensus 179 ~s~tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvde~vtvD~G--KaVAEglL 256 (536)
T COG2024 179 ESSTLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVDEDVTVDDG--KAVAEGLL 256 (536)
T ss_pred CCCceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEcCccccccc--HHHHHHHH
Confidence 3567899999998743223322233467999999999999983 23445556677788888765433222 23455667
Q ss_pred HHcCCC
Q 022115 218 KRIGIT 223 (302)
Q Consensus 218 ~~lgl~ 223 (302)
.++|.+
T Consensus 257 ~qfGFe 262 (536)
T COG2024 257 RQFGFE 262 (536)
T ss_pred HHhCcc
Confidence 888876
No 120
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=92.72 E-value=0.35 Score=48.91 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=54.9
Q ss_pred CCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEec----cCChhHHHHHHHHH
Q 022115 138 RGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIG----VPAVTAEAELISSI 213 (302)
Q Consensus 138 ~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG----~~~~~aDaEvi~l~ 213 (302)
+.+..-+||+.+|+.+...++.|......|+|+|.+|+|||.+.. . |....+.-+-| .+....-.++..++
T Consensus 179 p~~~~svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~--e---E~t~La~llsGs~W~~~e~vDFfDlKGiL 253 (529)
T PRK06253 179 PESSRLTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQR--E---DASRLMTYHSASCVIADEDVTVDDGKAVA 253 (529)
T ss_pred CccccCccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCc--c---chhheeEEEEccccccCCCCCHHHHHHHH
Confidence 346778999999999999988887666789999999999987521 1 22222222222 11111234677788
Q ss_pred HHHHHHcCCC
Q 022115 214 ITFFKRIGIT 223 (302)
Q Consensus 214 ~eil~~lgl~ 223 (302)
..+|+.+|++
T Consensus 254 E~LL~~LGI~ 263 (529)
T PRK06253 254 EGLLSQFGFT 263 (529)
T ss_pred HHHHHHcCCC
Confidence 8888888884
No 121
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=89.62 E-value=1.1 Score=46.79 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=76.9
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeC
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALR 146 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LR 146 (302)
-.++..++|....-.-. .........+.+++.+...||.|+.|-.|...+......+. ..+..++..+ +-..-+||
T Consensus 332 y~ni~~~~p~~~~~~~~-~~~~~~~~~r~vr~~l~~~G~~Evitysl~s~e~~~~~~~~--~~~~~~l~NPiS~e~s~mR 408 (650)
T COG0072 332 YNNIPPELPSAFTIGRG-GLTPLQKFRRKVRRALVGLGFQEVITYSLTSPEEAKLFGLE--NDEALELANPISEEYSVLR 408 (650)
T ss_pred cccCCCcCCcccccccC-CCChHHHHHHHHHHHHHhCCcceEeeeccCCHHHHHHhccC--CCcceEecCCcchhHHHHH
Confidence 33455555544432222 34456667788889999999999999999887765543221 1225667666 55566899
Q ss_pred CCChHHHHHHHHHhCCCCCCC-eEEEEEccccccC
Q 022115 147 PELTPSLARLVIQKGKSVSLP-LKWFAVGQCWRYE 180 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P-~K~~yig~VfR~e 180 (302)
+-+-+.+...++.|.+ .+.| .|+|.+|.||-.+
T Consensus 409 ~sLlp~LL~~~~~N~~-r~~~~~~iFEiG~v~~~~ 442 (650)
T COG0072 409 TSLLPGLLEALSYNKN-RKNPDVRIFEIGDVFVKD 442 (650)
T ss_pred HHHHHHHHHHHHHhhc-cCCCCeeEEEeeeeEecC
Confidence 9999999999988765 4667 9999999999976
No 122
>cd04750 Commd2 COMM_Domain containing protein 2. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=76.92 E-value=23 Score=30.48 Aligned_cols=72 Identities=19% Similarity=0.218 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhh------hcCCHHHHHHHHHHCCCCHH
Q 022115 208 ELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI------EKLPLDVIKNDLKSAGMSEA 281 (302)
Q Consensus 208 Evi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl------~k~~~~~v~~~L~~~gls~~ 281 (302)
|.+.++.+.+.+ |. +.++++.+.+.++++.+.-..+...+-.+ ...+-+.+...|..+|++++
T Consensus 1 e~~~~a~~~l~~-g~----------n~~~~~~~A~~l~i~~~~vk~~v~aL~~ll~~a~K~~l~~~~~~~~L~~l~~~~e 69 (166)
T cd04750 1 EFCKLAIEFLFK-GI----------NQKKYEGAARKLEVEVETVQHGVEALVYLLIESTKLKLSERDFQDSIEFLGFSDD 69 (166)
T ss_pred CHHHHHHHHHHc-CC----------ChHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHcCCCHH
Confidence 345666666654 33 36788999999999988776665555433 14678888899999999999
Q ss_pred HHHHHHHHh
Q 022115 282 AIEELLRVL 290 (302)
Q Consensus 282 ~~~~l~~l~ 290 (302)
.++.|.++.
T Consensus 70 ~~~~l~~~y 78 (166)
T cd04750 70 LNEILLQLY 78 (166)
T ss_pred HHHHHHHHH
Confidence 998888755
No 123
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=75.88 E-value=11 Score=37.14 Aligned_cols=100 Identities=17% Similarity=0.171 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-.+.|..+.+.+++.|...||.||.+|++--..+ -|. .-+|++ |--|+.-. +|.+---++-+- .+
T Consensus 242 vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQV----EGG---sTLFkl-dYyGEeAy----LTQSSQLYLEtc---lp 306 (545)
T KOG0555|consen 242 VLKARAALLRAMRDHYFERGYTEVTPPTMVQTQV----EGG---STLFKL-DYYGEEAY----LTQSSQLYLETC---LP 306 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCceecCCCceEEEEe----cCc---ceEEee-cccCchhh----ccchhHHHHHHh---hh
Confidence 3467888899999999999999999999975432 121 335665 54455433 344433333332 22
Q ss_pred CCeEEEEEccccccCCCC-CCCccceeEeeEEEecc
Q 022115 166 LPLKWFAVGQCWRYERMT-RGRRREHYQWNMDIIGV 200 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~-~gr~rEf~Q~g~EiiG~ 200 (302)
.--..|.|.+-||.|.+. +.+..|++.+.+|+--.
T Consensus 307 Algdvy~I~~SyRAEkSrTRRHLsEytHVEaE~afl 342 (545)
T KOG0555|consen 307 ALGDVYCIQQSYRAEKSRTRRHLSEYTHVEAECAFL 342 (545)
T ss_pred hcCceeEecHhhhhhhhhhhhhhhhheeeeeecccc
Confidence 345899999999998553 33567999888887543
No 124
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=67.94 E-value=77 Score=29.00 Aligned_cols=132 Identities=10% Similarity=0.119 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccchH-H--hhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 91 NWLFHNFQEVSRLFGFEEVDFPVLESEA-L--FIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~d-~--~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
.+|++.+.+.|+++|+..+....+-+.+ . +...+| |. |+..++.. ...+.-
T Consensus 2 ~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAG------M~------------------~Fkp~f~G--~~~p~~ 55 (232)
T cd00673 2 SEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAG------MN------------------QFKPIFLG--EVPPPA 55 (232)
T ss_pred hHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccc------hh------------------hhhHHhcC--CCCCCC
Confidence 4688999999999999999775554543 1 111112 22 33333311 111122
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHH-cCCCCCceEEEe--CChHHHHHHH
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAV--TAEAELISSIITFFKR-IGITASDVGFRI--SSRKVLQEVL 241 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~-lgl~~~~~~I~i--gh~~il~~il 241 (302)
-|...+++|-|-... ..|+. ..+..-+|.+|.-+- .--.|.|..+++.|.. +|+..+.+.+.+ ++-.-.+...
T Consensus 56 ~r~~~~QkCiR~~DienVG~t-~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~dde~~~~w~ 134 (232)
T cd00673 56 NRLVNSQKCIRAGDIDNVGKT-GRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWW 134 (232)
T ss_pred CceeeeeeceecCChhhcccc-ccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCCCHHHHHHHH
Confidence 477888888886422 23322 224456777776433 1226899999999965 788766554444 3334444444
Q ss_pred HhCCCChh
Q 022115 242 RCHSIPEH 249 (302)
Q Consensus 242 ~~~gl~~~ 249 (302)
+..|+|++
T Consensus 135 ~~~g~~~~ 142 (232)
T cd00673 135 WKIGLPGI 142 (232)
T ss_pred HhhCCCHH
Confidence 55566654
No 125
>PF02797 Chal_sti_synt_C: Chalcone and stilbene synthases, C-terminal domain; InterPro: IPR012328 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyze the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group []. This domain of chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in the N-terminal domain. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 3OV2_A 3OV3_B 1Z1F_A 1Z1E_A 3ALE_C 3OIT_A 2H84_A 1TEE_D 1TED_A 2P0U_A ....
Probab=61.85 E-value=89 Score=26.43 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=51.1
Q ss_pred eEeeEEEeccCChh--HHHHHHHHHHHHHHHcCCCCCc---eEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCC
Q 022115 191 YQWNMDIIGVPAVT--AEAELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLP 265 (302)
Q Consensus 191 ~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lgl~~~~---~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~ 265 (302)
.+.|+++.=...+- ....+-..+.+.|.+.|++..+ |.++=|.++|++++-+.+++++++-+.-+.+|......+
T Consensus 22 ~~~Gf~~~Ls~~vP~~i~~~i~~~~~~~L~~~g~~~~~~~~wavHPGG~~ILd~v~~~L~L~~~~l~~Sr~vLr~yGNmS 101 (151)
T PF02797_consen 22 GDTGFHFILSKEVPDLISDNIPPFVEDLLARHGLSDWDILFWAVHPGGRKILDAVEEALGLSPEQLRASREVLREYGNMS 101 (151)
T ss_dssp ETTEEEEEE-TTHHHHHHHHHHHHHHHHHHGGTCCSGGGSEEEEE-SSHHHHHHHHHHHTS-GGGGHHHHHHHHHH-B-G
T ss_pred eCCeEEEEEhhHhHHHHHHHHHHHHHHHHhhhcccccccceeeecCChHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 34566666555442 3345677888999999886433 788999999999999999999987766666665443333
Q ss_pred H
Q 022115 266 L 266 (302)
Q Consensus 266 ~ 266 (302)
.
T Consensus 102 S 102 (151)
T PF02797_consen 102 S 102 (151)
T ss_dssp G
T ss_pred C
Confidence 3
No 126
>COG5499 Predicted transcription regulator containing HTH domain [Transcription]
Probab=54.86 E-value=35 Score=27.59 Aligned_cols=71 Identities=14% Similarity=0.193 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEe-CChHHHHHHHHhCCCChhh-------HHHHHHHHHhhhcCCHHHHHHHHHHCCC
Q 022115 207 AELISSIITFFKRIGITASDVGFRI-SSRKVLQEVLRCHSIPEHL-------FGKVCIIIDKIEKLPLDVIKNDLKSAGM 278 (302)
Q Consensus 207 aEvi~l~~eil~~lgl~~~~~~I~i-gh~~il~~il~~~gl~~~~-------~~~v~~~ldkl~k~~~~~v~~~L~~~gl 278 (302)
++|+....++.+.-. +-+.- +-+.+++..++.+|++... +..+..+|++..+.+.+-++++-++.|+
T Consensus 39 ~~Ilatl~eAyE~kh-----~~i~aP~pve~I~t~Md~~glt~~dLa~~iGSks~vS~iL~~rraLTle~ikkL~q~~gI 113 (120)
T COG5499 39 ADILATLIEAYEFKH-----YPIAAPDPVEVIRTLMDQYGLTLADLANEIGSKSRVSNILSGRRALTLEHIKKLHQRFGI 113 (120)
T ss_pred HHHHHHHHhhhhhhh-----chhhcCCHHHHHHHHHHHhCCcHHHHHHHhCchHHHHHHHhhhhHhhHHHHHHHHHHhCc
Confidence 355666665554321 21222 3478888888988887653 4567888888878899999998899999
Q ss_pred CHHH
Q 022115 279 SEAA 282 (302)
Q Consensus 279 s~~~ 282 (302)
+.+.
T Consensus 114 pa~~ 117 (120)
T COG5499 114 PADV 117 (120)
T ss_pred CHHH
Confidence 9774
No 127
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=54.79 E-value=39 Score=36.72 Aligned_cols=129 Identities=13% Similarity=0.206 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCeeecCCcccchH----HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 92 WLFHNFQEVSRLFGFEEVDFPVLESEA----LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 92 ~i~~~l~~vf~~~Gy~eI~tP~le~~d----~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
+|++.+.+.|+++|+..|....+-|.+ +|. . .-|..| -.++.. ...+.-
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~-n------AGm~~f------------------k~~f~G--~~~p~~ 53 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLT-N------AGMAQF------------------KPIFTG--IVKPPS 53 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeee-c------cchhhh------------------hHHhcC--CCCCCC
Confidence 378899999999999999876666643 121 1 123323 222321 111122
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChh--HHHHHHHHHHHHHHH-cCCCCCceEEEe--CChHHHHHHH
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR-IGITASDVGFRI--SSRKVLQEVL 241 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~-lgl~~~~~~I~i--gh~~il~~il 241 (302)
-|...+++|.|-..- .-|+. ..+..-||..|.-+.- -=.|.|..+++.|.. +||+.+.+.+.+ ++..- ..++
T Consensus 54 ~r~~~~QkCiR~nDld~VG~t-~rHhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~D~ea-~~iW 131 (851)
T TIGR00344 54 NRLVNAQPCIRLNDIENVGRT-ARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYEDDEEA-YEIW 131 (851)
T ss_pred CCcccccccccccchhhhcCC-CcchhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCCCHHH-HHHH
Confidence 577788888886422 24442 2345567777764431 225999999999976 899876655533 44433 3444
Q ss_pred HhCCCChh
Q 022115 242 RCHSIPEH 249 (302)
Q Consensus 242 ~~~gl~~~ 249 (302)
..+|+|++
T Consensus 132 ~~~g~~~~ 139 (851)
T TIGR00344 132 EKHGIPAE 139 (851)
T ss_pred HhcCCCHH
Confidence 44788775
No 128
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=54.59 E-value=62 Score=27.91 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=42.9
Q ss_pred hHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHH
Q 022115 234 RKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (302)
Q Consensus 234 ~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l 289 (302)
..-+..++...|++++.-......+++. ++++-.++|..+|++++.+..|..+
T Consensus 118 ~~~w~~l~~~~g~~~~~m~~wh~~fe~~---~p~~h~~~l~~~g~~~~~~~~ir~~ 170 (172)
T cd04790 118 KEKWVAILKAAGMDEADMRRWHIEFEKM---EPEAHQEFLQSLGIPEDEIERIRAW 170 (172)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHh---CcHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5667788899999987766666666644 8899999999999999988887654
No 129
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.20 E-value=39 Score=36.70 Aligned_cols=133 Identities=14% Similarity=0.160 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccch-H--HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESE-A--LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~-d--~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
-.+|++.+.+.|+++|...+.+..+-|. | ++. +...|+.|.+- +... . .+.
T Consensus 8 ~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLf------tnAGm~~FK~~------------------f~g~-v-~p~ 61 (879)
T COG0013 8 TNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLF------TNAGMVQFKPY------------------FTGG-V-TPP 61 (879)
T ss_pred HHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEE------eecccccchhh------------------hcCC-C-CCC
Confidence 4678999999999999999977555554 2 111 12335555432 1111 1 123
Q ss_pred CeEEEEEccccccCCC-CCCCccceeEeeEEEeccCChh--HHHHHHHHHHHHH-HHcCCCCCceEEEeC--ChHHHHHH
Q 022115 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFF-KRIGITASDVGFRIS--SRKVLQEV 240 (302)
Q Consensus 167 P~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil-~~lgl~~~~~~I~ig--h~~il~~i 240 (302)
+-|...+++|-|-+.. ..|+. -.++.-||..|.-+.- =--|-|..++++| +.+|++...+.+.+= +-...+.-
T Consensus 62 ~~r~~~sQkcIR~NDieNVG~T-~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W 140 (879)
T COG0013 62 ANRAVTSQKCIRTNDIDNVGYT-ARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEW 140 (879)
T ss_pred CCCeeccccccccCchhhcCcc-ccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHH
Confidence 3388888888886522 24432 2245567777765542 2248899999999 788998766655543 33333322
Q ss_pred HHhCCCChh
Q 022115 241 LRCHSIPEH 249 (302)
Q Consensus 241 l~~~gl~~~ 249 (302)
.+.+|+|++
T Consensus 141 ~~~~gip~~ 149 (879)
T COG0013 141 EKIIGIPPE 149 (879)
T ss_pred HhhcCCCHH
Confidence 356777775
No 130
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.98 E-value=86 Score=23.47 Aligned_cols=44 Identities=14% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHH
Q 022115 239 EVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEEL 286 (302)
Q Consensus 239 ~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l 286 (302)
+.+..+|+|.+.-+.+...+-. +..-|++-.+++|++-..++.-
T Consensus 34 a~i~qLGip~eKLQ~lm~~VMq----nP~LikeAv~ELgLDFsKve~A 77 (82)
T PF11212_consen 34 ATIQQLGIPQEKLQQLMAQVMQ----NPALIKEAVEELGLDFSKVEAA 77 (82)
T ss_pred HHHHHcCCCHHHHHHHHHHHhc----ChHHHHHHHHHhCCcHHHHHHH
Confidence 4566778888776666655532 5667777778888877765543
No 131
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=48.04 E-value=90 Score=27.81 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=46.5
Q ss_pred HHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHHHH
Q 022115 213 IITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLR 288 (302)
Q Consensus 213 ~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l~~ 288 (302)
..+.|+++|++ .-.++.|..+-.-.-+..-.++++.++.+...++.+ |+.+.+.. +..+++.+.++.+.+
T Consensus 122 ~~~ll~klGv~--~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~----~~~f~~~Va~~R~~~~~~~~~~~~ 192 (222)
T cd07018 122 FKGLLDKLGVE--VQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSL----WDQYLADVAASRGLSPDALEALID 192 (222)
T ss_pred HHHHHHHcCCc--EEEEEEeccccccchhhcccCCHHHHHHHHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788999998 456677765443333333367888888888888876 55555554 456777776666554
No 132
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=47.17 E-value=80 Score=23.98 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=33.3
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~ 293 (302)
++.++...+..+.+.++ .++.++++..|...|++.+.++.+...++..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~ 56 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID 56 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 44555555555554443 4678889999988899888888887777543
No 133
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=46.57 E-value=69 Score=34.88 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccchH---HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 91 NWLFHNFQEVSRLFGFEEVDFPVLESEA---LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~d---~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
.+|++.+.+.|+++|+..|....+-|.+ ++... .-|..| -.++.. ...+.-
T Consensus 5 ~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~n------AGm~~f------------------k~~f~g--~~~p~~ 58 (865)
T PRK00252 5 AEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTN------AGMVQF------------------KDYFLG--QEKPPY 58 (865)
T ss_pred HHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeec------cchhhh------------------hHHhcC--CCCCCC
Confidence 5789999999999999999775555521 21111 123222 222221 111112
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChh--HHHHHHHHHHHHHHH-cCCCCCceEEEe--CChHHHHHHH
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR-IGITASDVGFRI--SSRKVLQEVL 241 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~-lgl~~~~~~I~i--gh~~il~~il 241 (302)
-|....++|-|-..- .-|+. -.+..-||..|.-+.- ---|.|..+++.|.. +|+..+.+.+.+ ++..-.+--+
T Consensus 59 ~r~~~~QkCiR~nDld~VG~t-~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~D~e~~~iW~ 137 (865)
T PRK00252 59 PRATTSQKCIRTNDLENVGYT-ARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWK 137 (865)
T ss_pred CCcccccccccccchhhccCC-CCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCCCHHHHHHHH
Confidence 467777888886422 23432 2244567777764431 225999999999955 898766654433 5444443334
Q ss_pred HhCCCChh
Q 022115 242 RCHSIPEH 249 (302)
Q Consensus 242 ~~~gl~~~ 249 (302)
+.+|+|++
T Consensus 138 ~~~g~~~~ 145 (865)
T PRK00252 138 KEIGVPPE 145 (865)
T ss_pred hccCCCHH
Confidence 46677774
No 134
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=45.07 E-value=1e+02 Score=25.08 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=33.9
Q ss_pred hHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHH
Q 022115 234 RKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (302)
Q Consensus 234 ~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l 289 (302)
..-++.++..+|+++. .+++..+- .-.+++.+.++++.+++.++++..+.|.++
T Consensus 56 aEpIQTvmRr~g~~~p-YE~LK~lT-Rg~~it~~~l~~fI~~L~ip~~~k~~L~~l 109 (115)
T PF08328_consen 56 AEPIQTVMRRYGIPNP-YEKLKELT-RGKKITKEDLREFIESLDIPEEAKARLLAL 109 (115)
T ss_dssp HHHHHHHHHHTT-SSH-HHHHHHHH-TTS---HHHHHHHHHTSSS-HHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHH-cCCCCCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence 4456677888888763 44443333 223678899999999999999988888765
No 135
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=40.78 E-value=25 Score=25.05 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=33.7
Q ss_pred HHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCCh
Q 022115 241 LRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSL 295 (302)
Q Consensus 241 l~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~ 295 (302)
|+.+|+++.+......++ +. +...+.+.-+.+|++...+...++-+.-+|+
T Consensus 1 L~~~gLs~~E~~vy~~Ll-~~---~~~t~~eIa~~l~i~~~~v~~~L~~L~~~Gl 51 (68)
T PF01978_consen 1 LEVLGLSENEAKVYLALL-KN---GPATAEEIAEELGISRSTVYRALKSLEEKGL 51 (68)
T ss_dssp HHHHCHHHHHHHHHHHHH-HH---CHEEHHHHHHHHTSSHHHHHHHHHHHHHTTS
T ss_pred CCcCCcCHHHHHHHHHHH-Hc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 356778776555444444 33 3444566667888999988888877776664
No 136
>PLN03173 chalcone synthase; Provisional
Probab=40.37 E-value=1.5e+02 Score=28.95 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCc---eEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCC
Q 022115 205 AEAELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLP 265 (302)
Q Consensus 205 aDaEvi~l~~eil~~lgl~~~~---~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~ 265 (302)
+...+-..+.++|++.|+...+ |.++=++.+|++++.+.+|+++++....+..+++....+
T Consensus 275 ~~~~~~~~i~~~L~~~gl~~~di~~~v~Hqgg~~Il~~v~~~LgL~~ekl~~s~~vl~~yGNtS 338 (391)
T PLN03173 275 ISKNVEKSLTEAFKPLGISDWNSLFWIAHPGGPAILDQVEAKLALKPEKLRATRHVLSEYGNMS 338 (391)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCeEEECCCcHHHHHHHHHHcCCChHHHHHHHHHHHHhCcch
Confidence 3345566777888888865433 567779999999999999999987665555666554333
No 137
>PLN03172 chalcone synthase family protein; Provisional
Probab=38.88 E-value=1.5e+02 Score=28.94 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCc---eEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCH
Q 022115 206 EAELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPL 266 (302)
Q Consensus 206 DaEvi~l~~eil~~lgl~~~~---~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~ 266 (302)
...+-..+.++|...|+...+ |.++=++.+|++++.+.+|+++++...-...+++....+.
T Consensus 276 ~~~i~~~~~~~L~~~gl~~~di~~~~~Hqgg~~Il~~v~~~Lgl~~~~~~~s~~vl~~yGNtSS 339 (393)
T PLN03172 276 SKNIEKSLVEAFAPIGINDWNSIFWIAHPGGPAILDQVEIKLDLKEEKLRATRHVLSDYGNMSS 339 (393)
T ss_pred HHHHHHHHHHHhhhcCCCccccceEEecCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccHH
Confidence 344555667777777865334 5567899999999999999999877665566665544333
No 138
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=37.92 E-value=59 Score=23.10 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=26.1
Q ss_pred HhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHHHHHh
Q 022115 242 RCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVL 290 (302)
Q Consensus 242 ~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l~~l~ 290 (302)
..+++.++--...+..+++. +..+.+.| +.+|++++.+++|.+.+
T Consensus 22 ~~~~~~~e~l~~~l~~i~~~----yGs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 22 SLMSVRPEYLEAALDAIDER----YGSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHS--HHHHHHHHHHHHHH----HSSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred hhcCccHHHHHHHHHHHHHH----cCCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 34455555444444555433 66788999 57799999999987653
No 139
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=37.91 E-value=1.1e+02 Score=28.52 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=33.9
Q ss_pred CCCeEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
+.|.+..|+.++.|......| |.-.++|.-+-+ .+++. .+-.+..++|+.+||..
T Consensus 43 pepw~vaYVqPsrRP~DGRYGeNPNRLq~y~QfQVil--KPsP~---niq~lYL~SL~~lGId~ 101 (284)
T PF02091_consen 43 PEPWNVAYVQPSRRPTDGRYGENPNRLQHYYQFQVIL--KPSPD---NIQELYLESLEALGIDP 101 (284)
T ss_dssp SS-EEEEEEEEEE-GGG--TTTSSS--SEEEEEEEEE--ES--T---THHHHHHHHHHHCT--C
T ss_pred CCCccccccccCCCCCCCccCCCchHhhhhheeEEEE--cCCCc---cHHHHHHHHHHHhCCCc
Confidence 569999999999997644444 445678877644 34442 56678899999999854
No 140
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=37.66 E-value=38 Score=37.03 Aligned_cols=131 Identities=11% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccc---hHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLES---EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~---~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
...+++.+.+.|+++|...|....+-+ -|++... ..|+.|.+ ++.. +...+.
T Consensus 58 ~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~------Agm~~Fkp------------------~f~~-G~~~pp 112 (902)
T TIGR03683 58 LDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTI------ASIADFQP------------------WVTS-GLVPPP 112 (902)
T ss_pred HHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEee------cchhhhhH------------------hhcC-CCCCCC
Confidence 468999999999999999997755544 2233222 22443432 2221 111111
Q ss_pred CeEEEEEccccccCCC-CCCCc----cceeEeeEEEeccCCh--hHHHHHHHHHHHHHHHcCCCCC------ce------
Q 022115 167 PLKWFAVGQCWRYERM-TRGRR----REHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGITAS------DV------ 227 (302)
Q Consensus 167 P~K~~yig~VfR~e~~-~~gr~----rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~lgl~~~------~~------ 227 (302)
--++...++|-|-..- .-|+. -=|...|=.-||.++- .=--|.|..+++.|+.||+... ||
T Consensus 113 ~~r~~~sQkCiR~nDldnVG~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l~~lgi~~~~i~~~enfW~~GGp 192 (902)
T TIGR03683 113 ANPLVISQPCIRLNDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFLEELGIDPEEITYKESPWEGGGN 192 (902)
T ss_pred CCCceeccccccccccccccCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHHHHcCCCHHHeeecCCccCCCCC
Confidence 2366777788885422 23432 2233334444443221 1225899999999977888542 11
Q ss_pred -----EEEeCChHHHHHHHHhCC
Q 022115 228 -----GFRISSRKVLQEVLRCHS 245 (302)
Q Consensus 228 -----~I~igh~~il~~il~~~g 245 (302)
.|.+....|++-++..+.
T Consensus 193 cGPcsEi~~~glEiwnlVFmq~~ 215 (902)
T TIGR03683 193 AGPCFEVIVGGLELATLVFMQYE 215 (902)
T ss_pred CCCceeeeeCcEeeeeeeeeeec
Confidence 344445666666666553
No 141
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=37.44 E-value=1.3e+02 Score=31.40 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccchH---HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 91 NWLFHNFQEVSRLFGFEEVDFPVLESEA---LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~d---~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
..|++.+.+.|+++|+..+....+-|.+ ++...+| | .||-.++.. ...+.-
T Consensus 4 ~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAG------m------------------~~fk~~f~G--~~~p~~ 57 (594)
T PRK01584 4 DELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAG------M------------------HPLVPYLLG--EPHPSG 57 (594)
T ss_pred HHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccc------h------------------hhhhHHhcC--CCCCCC
Confidence 5789999999999999999776655532 1111111 2 233333321 111122
Q ss_pred eEEEEEccccccCC-CCCCCccceeEeeEEEeccCChh--HHHHHHHHHHHHHHH---cCCCCCceEEEeC--------C
Q 022115 168 LKWFAVGQCWRYER-MTRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR---IGITASDVGFRIS--------S 233 (302)
Q Consensus 168 ~K~~yig~VfR~e~-~~~gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~---lgl~~~~~~I~ig--------h 233 (302)
-|...+++|.|-.. ...|..| +..-||..|.-+.- =-.|.|..+++.|.. +|+..+.+.+.+= +
T Consensus 58 ~r~~~~QkCiR~~Dle~VG~~r--HhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D 135 (594)
T PRK01584 58 TRLVDVQKCLRTGDIDEVGDLS--HLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRD 135 (594)
T ss_pred CCccccccccccccccccCCCc--chhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCC
Confidence 46677778888642 2344333 55667778865442 225899999999964 8887666555443 2
Q ss_pred hHHHHHHHHhCCCChh
Q 022115 234 RKVLQEVLRCHSIPEH 249 (302)
Q Consensus 234 ~~il~~il~~~gl~~~ 249 (302)
..- ..++..+|+|++
T Consensus 136 ~Ea-~~iW~~~g~~~~ 150 (594)
T PRK01584 136 EET-ASVWESLGIPKD 150 (594)
T ss_pred HHH-HHHHHHcCCCHH
Confidence 222 233433777764
No 142
>PF11181 YflT: Heat induced stress protein YflT
Probab=37.09 E-value=2e+02 Score=22.35 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCCh------hhHHHHHHHHHhhhcCCHHHHHHHHHHCCCC
Q 022115 206 EAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE------HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMS 279 (302)
Q Consensus 206 DaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~------~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls 279 (302)
+.|++..+.++ +.-|....++.|.-.+..-++.+-+..+... .....+..++. .+-+++++.|.++|++
T Consensus 9 ~~E~~~~I~~L-~~~Gy~~ddI~Vva~d~~~~~~l~~~t~~~~~~~~~~~~~d~~~~~f~----~~~d~~~~~l~~lGl~ 83 (103)
T PF11181_consen 9 EEEALSAIEEL-KAQGYSEDDIYVVAKDKDRTERLADQTDTNTVGASEESFWDKIKNFFT----SGGDELRSKLESLGLS 83 (103)
T ss_pred HHHHHHHHHHH-HHcCCCcccEEEEEcCchHHHHHHHhcCCceeccccccHHHHHHHhcc----CCcHHHHHHHHHcCCC
Confidence 45666666554 4568877788777767777777777765432 22333333332 3567899999999999
Q ss_pred HHHHHHHHHHhc
Q 022115 280 EAAIEELLRVLS 291 (302)
Q Consensus 280 ~~~~~~l~~l~~ 291 (302)
.+.++...+-+.
T Consensus 84 ~~ea~~y~~~l~ 95 (103)
T PF11181_consen 84 EDEAERYEEELD 95 (103)
T ss_pred HHHHHHHHHHHH
Confidence 999888766543
No 143
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=37.02 E-value=91 Score=24.31 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=11.5
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Q 022115 264 LPLDVIKNDLKSAGMSEAAIEEL 286 (302)
Q Consensus 264 ~~~~~v~~~L~~~gls~~~~~~l 286 (302)
+++...+.+..++|+++..++.+
T Consensus 17 V~~~~Wk~laR~LGLse~~I~~i 39 (96)
T cd08315 17 VPFDSWNRLMRQLGLSENEIDVA 39 (96)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34444455555555555554444
No 144
>PF14747 DUF4473: Domain of unknown function (DUF4473)
Probab=34.95 E-value=63 Score=24.38 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHhc
Q 022115 265 PLDVIKNDLKSAGMSEAAIEELLRVLS 291 (302)
Q Consensus 265 ~~~~v~~~L~~~gls~~~~~~l~~l~~ 291 (302)
+.++++.+|...|+|+..++.|..+-.
T Consensus 7 t~ee~kaEL~aAGmS~~aidgi~~i~~ 33 (82)
T PF14747_consen 7 TEEEAKAELVAAGMSEKAIDGIVKIAE 33 (82)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 467889999999999999999988753
No 145
>KOG2472 consensus Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=32.95 E-value=3.7e+02 Score=27.59 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=51.2
Q ss_pred eEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccC-CCCCCCccceeEeeEEEeccCChhHHHHHHH-HHHHHHHH
Q 022115 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRGRRREHYQWNMDIIGVPAVTAEAELIS-SIITFFKR 219 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~-l~~eil~~ 219 (302)
--+.|--+-+.+.+-++.|.+ .++|+|+|.++.|-=.+ ....|-..|..-|. -..|..+- .|+|. +.+..|+.
T Consensus 442 fqv~RtsLlPGllKTv~~N~~-~~lP~klFEisDvv~~D~~~e~ga~N~R~l~A-~y~g~~~g---fE~i~Glld~~l~~ 516 (578)
T KOG2472|consen 442 FQVVRTSLLPGLLKTVASNRK-MPLPIKLFEISDVVFKDSSTEVGARNERHLAA-VYCGKTSG---FEIIHGLLDQLLNV 516 (578)
T ss_pred eeeehhhhchHHHHHHHhccC-CCCceeEEEeeeEEEecccccccccchheeee-eecCCCcc---HHHHHHHHHHHhcC
Confidence 346677788889999998765 58999999999875543 44455444444333 34444322 35444 45555555
Q ss_pred cCCCCCceEEEe
Q 022115 220 IGITASDVGFRI 231 (302)
Q Consensus 220 lgl~~~~~~I~i 231 (302)
-++.. .|.|+-
T Consensus 517 ~~~~~-~Y~i~~ 527 (578)
T KOG2472|consen 517 PPIRD-SYYIEA 527 (578)
T ss_pred Ccccc-ceEEec
Confidence 56553 355543
No 146
>PLN03170 chalcone synthase; Provisional
Probab=32.74 E-value=2.4e+02 Score=27.67 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCc---eEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCC
Q 022115 205 AEAELISSIITFFKRIGITASD---VGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLP 265 (302)
Q Consensus 205 aDaEvi~l~~eil~~lgl~~~~---~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~ 265 (302)
+...+-..+.++|++.|+...+ |.++=++..|++.+.+.+|+++++...-...+++....+
T Consensus 279 ~~~~i~~~v~~~L~~~gl~~~di~~~v~Hqgg~~il~~v~~~Lgl~~~~~~~s~~~l~~~GNts 342 (401)
T PLN03170 279 ISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLEKERMRATRHVLSEYGNMS 342 (401)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCeEEecCCcHHHHHHHHHHcCCChHHHHHHHHHHHHhCccH
Confidence 4445666888888888875432 556778999999999999999987655455565554333
No 147
>PLN03169 chalcone synthase family protein; Provisional
Probab=31.01 E-value=2.9e+02 Score=26.87 Aligned_cols=56 Identities=5% Similarity=0.011 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHcCCCCC-----ceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhh
Q 022115 207 AELISSIITFFKRIGITAS-----DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIE 262 (302)
Q Consensus 207 aEvi~l~~eil~~lgl~~~-----~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~ 262 (302)
..+-.++.++|++.|+... .|.++-++..|++.+.+.+|+++++...-...+++..
T Consensus 281 ~~~~~~i~~~L~~~gl~~~did~~~~v~Hq~n~~il~~v~~~Lgl~~ek~~~s~~~l~~~G 341 (391)
T PLN03169 281 DNIEGFCKKLMKKAGLVEKDYNDLFWAVHPGGPAILNRLEKKLKLAPEKLECSRRALMDYG 341 (391)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcceEEecCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3445566888988898622 2457778899999999999999986554334455443
No 148
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=30.83 E-value=1.6e+02 Score=22.01 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=37.8
Q ss_pred hHHHHHHHHhC--CCChhhHHHHHHHHHhh-------hcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 234 RKVLQEVLRCH--SIPEHLFGKVCIIIDKI-------EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 234 ~~il~~il~~~--gl~~~~~~~v~~~ldkl-------~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
.+|.+.....+ -+++..+..+...+.-+ ..++-+.-++.-.+.|+...-++.|..|++..|
T Consensus 10 yDi~deYatE~a~pVse~erd~LAhYFQlLitRLmnneeIsEeaQ~EMA~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 10 YDIADEYATEAAKPVSEAERDALAHYFQLLITRLMNNEEISEEAQQEMASEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred hhhHHHHHHhhccCcchhhhhHHHHHHHHHHHHHhccHhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHhc
Confidence 44555555444 35666666665554432 123333333334589999999999999998877
No 149
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=30.73 E-value=1.3e+02 Score=26.52 Aligned_cols=66 Identities=6% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHH
Q 022115 213 IITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEEL 286 (302)
Q Consensus 213 ~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l 286 (302)
..+.|+++|++ .-.++.|..+-.-.-+ -.++++.++.+-..+|.+ |+.+.+.. +..|++.+.++.+
T Consensus 106 ~~~~l~k~Gv~--~~~~~~g~~K~~~~~~--~~~s~~~~e~~~~~l~~~----~~~f~~~va~~R~~~~~~~~~~ 172 (207)
T TIGR00706 106 VEKLYEKLGIE--FEVIKSGEYKDIGSPT--RELTPEERDILQNLVNES----YEQFVQVVAKGRNLPVEDVKKF 172 (207)
T ss_pred HHHHHHhCCce--EEEEEcCCCcCCCCCC--CCCCHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCHHHHHHH
Confidence 67788899997 4567777755433333 257787888887888765 44444444 3456665554443
No 150
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.27 E-value=2.4e+02 Score=21.17 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcC
Q 022115 238 QEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSI 292 (302)
Q Consensus 238 ~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~ 292 (302)
-++|+.-++++++-.++...+-. +.-..-..+.++|++++.+..+......
T Consensus 5 ia~LKehnvsd~qi~elFq~lT~----NPl~AMa~i~qLGip~eKLQ~lm~~VMq 55 (82)
T PF11212_consen 5 IAILKEHNVSDEQINELFQALTQ----NPLAAMATIQQLGIPQEKLQQLMAQVMQ 55 (82)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhh----CHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46788889999887777766642 2323345668999999998888776644
No 151
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=29.92 E-value=59 Score=33.46 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCeeecCCcccch---HHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 92 WLFHNFQEVSRLFGFEEVDFPVLESE---ALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 92 ~i~~~l~~vf~~~Gy~eI~tP~le~~---d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
+|++.+.+.|+++|+..|....+-+. +++.. ...|+.|.+- -|.. ..+..
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~------~Agm~~fkp~f~g~~--------------------~~p~~ 54 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFT------NAGMNQFKPYFLGGE--------------------VPPPA 54 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--------SGGGGGCCCCTTSS--------------------S--SS
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceee------HhhHHHHHHHhcCCC--------------------CCCCC
Confidence 47889999999999999977544442 22222 2234444332 1110 01224
Q ss_pred eEEEEEccccccC----CC-CCCCccceeEeeEEEeccCCh--hHHHHHHHHHHHHHH-HcCCCCCceEEEe
Q 022115 168 LKWFAVGQCWRYE----RM-TRGRRREHYQWNMDIIGVPAV--TAEAELISSIITFFK-RIGITASDVGFRI 231 (302)
Q Consensus 168 ~K~~yig~VfR~e----~~-~~gr~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~-~lgl~~~~~~I~i 231 (302)
-|...+++|.|-. .. ..|+. -.+...||++|.-+. .--.|.|..+++.|. .|||....+.+.+
T Consensus 55 ~r~~~~Q~CiR~~GkhnDld~VG~t-~rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~ 125 (552)
T PF01411_consen 55 NRLVSSQKCIRTGGKHNDLDNVGRT-GRHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTV 125 (552)
T ss_dssp SCEEEEEEEE-EETTEECGGGTTTS-SS--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEE
T ss_pred CcccccceeeccCCCcchhhhcCCC-ceEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEE
Confidence 5888999999965 11 13331 224456666664322 223589999999998 6788765555544
No 152
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=29.14 E-value=2.3e+02 Score=20.68 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=36.2
Q ss_pred CCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCChHHHhc
Q 022115 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 300 (302)
Q Consensus 245 gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~~~~~~ 300 (302)
.+++.++...--++++.+....-.+.+.-+..|+|+.++-++.+-+...|..+++.
T Consensus 13 ~ls~~e~~Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~efk~ 68 (77)
T PF01418_consen 13 SLSPTEKKIADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEFKI 68 (77)
T ss_dssp GS-HHHHHHHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 35555544444445555544555667777889999999999999999999877753
No 153
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=28.89 E-value=1.3e+02 Score=23.89 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=35.0
Q ss_pred CChhhHHHHHHHHHhhh----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCC
Q 022115 246 IPEHLFGKVCIIIDKIE----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~ 293 (302)
++++++.....+++.++ .++-+.+++.|.+.||+.+.+..|+++-+..
T Consensus 4 ls~~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~ 55 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID 55 (104)
T ss_dssp -SCCHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS
T ss_pred CCHHHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC
Confidence 44555555666665554 3567888999999999999999999988764
No 154
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=28.51 E-value=2.8e+02 Score=23.85 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHhh------hcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCC
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKI------EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldkl------~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~ 293 (302)
++..++ ..+....|+..+.-..+...+..+ ...+.+.+.+.|..+|++++.++.+.+...-+
T Consensus 22 ~~~~~~-~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~e~~~~l~~~~~~~ 89 (174)
T cd04752 22 IDYEKV-LKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPKEHATSLCRSYEEK 89 (174)
T ss_pred CCHHHH-HHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 333444 556666677665555554444322 13678889999999999999988888766543
No 155
>cd04749 Commd1_MURR1 COMM_Domain containing protein 1, also called Murr1. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=28.37 E-value=2.2e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=38.0
Q ss_pred EeCChHHHHHHHHhC---CCChhhHHHHHHH----HHhhh--cCCHHHHHHHH-----HHCCCCHHHHHHHHHHh
Q 022115 230 RISSRKVLQEVLRCH---SIPEHLFGKVCII----IDKIE--KLPLDVIKNDL-----KSAGMSEAAIEELLRVL 290 (302)
Q Consensus 230 ~igh~~il~~il~~~---gl~~~~~~~v~~~----ldkl~--k~~~~~v~~~L-----~~~gls~~~~~~l~~l~ 290 (302)
..|+.+|.+.++..- .++.+.+..+... |.+.- -.+.+.+..+| +++|++.+....|.++-
T Consensus 13 ~~~~~~ite~~l~~~l~~~~~~ed~ka~~ak~~~ii~saa~~dvD~~~L~~~Lt~q~~qQ~Gl~~eha~~l~Kfw 87 (174)
T cd04749 13 YYGNAEITEELLRSELYPEDPLEEFRALHNKMRGLLKSIASADMDINQLEAFLTAQTKKQGGITSLQAAVIAKFW 87 (174)
T ss_pred HccccchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHhhHHHhcCCChHHHHHHHHHH
Confidence 346677777777653 2333333333222 22222 36889999999 79999999777766554
No 156
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region. Members of the subfamily recognized by this model include competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This model represents a region of two tandem copies of a helix-hairpin-helix domain (pfam00633), each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to the region covered by this model.
Probab=27.37 E-value=2.1e+02 Score=20.34 Aligned_cols=63 Identities=13% Similarity=0.238 Sum_probs=38.1
Q ss_pred ceEEEeCChHHHHHHHH-hCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhc
Q 022115 226 DVGFRISSRKVLQEVLR-CHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLS 291 (302)
Q Consensus 226 ~~~I~igh~~il~~il~-~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~ 291 (302)
...|.||+... ..+.. .-|+......+++...++. .++..+.++..-.|++.+.+++|..++.
T Consensus 5 ~~~invNta~~-~~L~~~ipgig~~~a~~Il~~R~~~--g~~~s~~dL~~v~gi~~~~~~~i~~~~~ 68 (69)
T TIGR00426 5 GTRVNINTATA-EELQRAMNGVGLKKAEAIVSYREEY--GPFKTVEDLKQVPGIGNSLVEKNLAVIT 68 (69)
T ss_pred CCeeECcCCCH-HHHHhHCCCCCHHHHHHHHHHHHHc--CCcCCHHHHHcCCCCCHHHHHHHHhhcc
Confidence 35678888654 23334 3477776555444443322 1355555555567999999999987753
No 157
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=27.17 E-value=84 Score=34.43 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccc---hHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 89 LRNWLFHNFQEVSRLFGFEEVDFPVLES---EALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~---~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
....+++.+.+.|+++|...|....+-+ -|++... ..|+.|. .++.. +...+
T Consensus 60 ~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~------Agm~~Fk------------------p~f~~-G~~~p 114 (900)
T PRK13902 60 TLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTI------ASIYDFQ------------------PWVTS-GLVPP 114 (900)
T ss_pred CHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeee------cchhhhh------------------HHhcC-CCCCC
Confidence 3478899999999999999997755544 2243222 2243332 22221 11111
Q ss_pred CCeEEEEEccccccCCC-CCCC----ccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHH-cCCCC
Q 022115 166 LPLKWFAVGQCWRYERM-TRGR----RREHYQWNMDIIGVPAV--TAEAELISSIITFFKR-IGITA 224 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~-~~gr----~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~-lgl~~ 224 (302)
.--++..+++|-|-..- .-|+ .-=|...|=.-||.++. .=-.|.|..+++.|.. ||++.
T Consensus 115 p~~~~~~sQ~CiR~nDldnVG~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~ 181 (900)
T PRK13902 115 PANPLVISQPCIRLNDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDP 181 (900)
T ss_pred CCCCceecccccchhhhhhccccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCH
Confidence 12466777888885422 2333 22333444445553221 1225899999999987 78754
No 158
>PLN02900 alanyl-tRNA synthetase
Probab=27.15 E-value=1.7e+02 Score=32.29 Aligned_cols=117 Identities=11% Similarity=0.081 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccchH---HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCC--
Q 022115 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEA---LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKS-- 163 (302)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d---~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~-- 163 (302)
.-.+|++.+.+.|+++|...+....+-|.+ ++.. ..-|+.| -.++......
T Consensus 12 ~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllft------nAGm~~F------------------k~~f~G~~~p~~ 67 (936)
T PLN02900 12 PGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFT------NAGMNQF------------------KPIFLGTADPNT 67 (936)
T ss_pred CHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeee------ecchhhh------------------hhhhcCCCCCCC
Confidence 447899999999999999999876666532 1111 1123333 3333211100
Q ss_pred CC-CCeEEEEEcccccc----CC-CCCCCccceeEeeEEEeccCChh--HHHHHHHHHHHHHHH-cCCCCCceEEE
Q 022115 164 VS-LPLKWFAVGQCWRY----ER-MTRGRRREHYQWNMDIIGVPAVT--AEAELISSIITFFKR-IGITASDVGFR 230 (302)
Q Consensus 164 ~~-~P~K~~yig~VfR~----e~-~~~gr~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~-lgl~~~~~~I~ 230 (302)
.+ .--|...+++|.|- .. ..-|+. ..+..-||.+|.-+.- -=.|.|..+++.|.. |||..+.+.+.
T Consensus 68 ~~~~~~R~~~~QkCiR~gGKHnDlenVG~t-~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vT 142 (936)
T PLN02900 68 PLRKLPRATNTQKCIRAGGKHNDLDDVGKD-TYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYAT 142 (936)
T ss_pred CCCCCCceeeecccccCCCCCCCHhhccCC-CCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEE
Confidence 00 11478889999998 31 124433 2345677777764431 124999999999976 89987666444
No 159
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=27.13 E-value=1.3e+02 Score=27.93 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=38.7
Q ss_pred CCCeEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
+.|.+..|+.++.|......| |.-.++|.-+-+ .+++. .+-.+..++|+.+||..
T Consensus 44 pepw~vAYVqPsrRP~DGRYGeNPNRLq~y~QfQVii--KPsP~---niQelYL~SL~~lGid~ 102 (279)
T cd00733 44 PEPWNVAYVEPSRRPTDGRYGENPNRLQHYYQFQVII--KPSPD---NIQELYLESLEALGINP 102 (279)
T ss_pred CCcceeccccCCCCCCCCCcCCCchhhhhheeeEEEE--CCCCc---cHHHHHHHHHHHhCCCc
Confidence 469999999999997644444 344677876643 44442 45667889999998864
No 160
>PLN03168 chalcone synthase; Provisional
Probab=26.96 E-value=3.6e+02 Score=26.28 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCCCCC---ceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCH
Q 022115 209 LISSIITFFKRIGITAS---DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPL 266 (302)
Q Consensus 209 vi~l~~eil~~lgl~~~---~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~ 266 (302)
+-.++.+.+...|+... .|.++=++.+|++++.+.+|+++++...-...+++....+.
T Consensus 278 ~~~~l~~~l~~~~~~~~d~~~~v~Hqgg~~Il~~v~~~Lgl~~ek~~~s~~vl~~yGNtSS 338 (389)
T PLN03168 278 IEKFLNEARKCVGSPDWNEMFWAVHPGGPAILDQVEAKLKLTKDKMQGSRDILSEFGNMSS 338 (389)
T ss_pred HHHHHHHHHHhcCCCccccceEEecCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccHh
Confidence 34455666666766421 26788899999999999999999876554556665544333
No 161
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=26.82 E-value=1.3e+02 Score=27.99 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=39.0
Q ss_pred CCCeEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
+.|.+..|+.++.|......| |.-.++|.-+-+ .+++. .+-.+..++|+.+||..
T Consensus 48 pepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQVil--KPsP~---niQelYL~SL~~lGid~ 106 (283)
T PRK09348 48 PEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQVIL--KPSPD---NIQELYLGSLEALGIDP 106 (283)
T ss_pred CCccccccccCCCCCCCCCcCCCchhhhhheeeEEEE--cCCCc---cHHHHHHHHHHHhCCCc
Confidence 469999999999997644444 345677876643 44442 46678889999998864
No 162
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=26.57 E-value=1.4e+02 Score=22.53 Aligned_cols=14 Identities=14% Similarity=0.278 Sum_probs=8.6
Q ss_pred HHHHHHhCCCChhh
Q 022115 237 LQEVLRCHSIPEHL 250 (302)
Q Consensus 237 l~~il~~~gl~~~~ 250 (302)
++.+...+|+++..
T Consensus 14 wk~~~R~LGlse~~ 27 (80)
T cd08313 14 WKEFVRRLGLSDNE 27 (80)
T ss_pred HHHHHHHcCCCHHH
Confidence 45566666776643
No 163
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=26.50 E-value=1.8e+02 Score=22.33 Aligned_cols=54 Identities=15% Similarity=0.286 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 236 il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++++.+.++=++ ..|.+.|.+. .+.+-+++.....|++.+..+.+.+++++++
T Consensus 6 vi~AiA~aL~R~~---~dVl~Vl~~~--~~~~~~~~l~~G~Gl~l~~le~~f~~F~I~A 59 (89)
T PF05379_consen 6 VIRAIAEALGRRE---QDVLAVLSRK--CGEELLEELWSGEGLDLEDLEELFELFDICA 59 (89)
T ss_pred hhHHHHHHhCCCH---HHHHHHHHhc--cCHHHHHHHHcCCCcCHHHHHHHHHHcCeEE
Confidence 4677778776444 3455555532 2444455555789999888888888887765
No 164
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=26.29 E-value=1.4e+02 Score=27.91 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCeEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
+.|.+..|+.++.|......| |.-.++|.-+-+ .+++. .+-.+..++|+.+|+..
T Consensus 45 pepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQVil--KPsP~---niQelYL~SL~~lGid~ 103 (293)
T TIGR00388 45 PEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQVVI--KPSPD---NIQELYLDSLRALGIDP 103 (293)
T ss_pred CCcceeccccCCCCCCCCCCCCCchhhhheeeeEEEE--CCCCc---cHHHHHHHHHHHhCCCc
Confidence 469999999999997644443 345677876643 44442 46678889999999864
No 165
>cd04755 Commd7 COMM_Domain containing protein 7. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=24.96 E-value=3.9e+02 Score=23.45 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=43.8
Q ss_pred hHHHHHHHHhCCCChhhHHHHHHHHHhh------hcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 234 RKVLQEVLRCHSIPEHLFGKVCIIIDKI------EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 234 ~~il~~il~~~gl~~~~~~~v~~~ldkl------~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
...++.+-...+++...-..+.+.+.-+ ...+.+.+.+.|+.+|++.+.++.+-+.-...|
T Consensus 33 ~~~~~ef~~~~~~~~~dlk~vi~~l~fi~~~A~k~nv~~~~L~~eL~~lgL~~eka~~~~~~w~~~~ 99 (180)
T cd04755 33 LNQLDEFAGENGISLGPLKNIVKSILLVPNGALKRNLTAEQLREDLIQLGLSEEKASYFSEQWKQHY 99 (180)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhH
Confidence 4566677677788887766666665332 246899999999999999998887665544433
No 166
>PRK14136 recX recombination regulator RecX; Provisional
Probab=24.70 E-value=2.3e+02 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.4
Q ss_pred cCCHHHHHHHHHHCCCCHHHHHHHHHH
Q 022115 263 KLPLDVIKNDLKSAGMSEAAIEELLRV 289 (302)
Q Consensus 263 k~~~~~v~~~L~~~gls~~~~~~l~~l 289 (302)
+.+...|+.+|.+.||+.+.++..+..
T Consensus 225 kkGp~rIrqELrQKGId~eLIEqALee 251 (309)
T PRK14136 225 RVGSARIVSELKRHAVGDALVESVGAQ 251 (309)
T ss_pred chhHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457778889999999998888876653
No 167
>COG4388 Mu-like prophage I protein [General function prediction only]
Probab=24.42 E-value=2.5e+02 Score=26.80 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=73.1
Q ss_pred ecCCcccchHHh---hhhhccc----cccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCC
Q 022115 109 VDFPVLESEALF---IRKAGEE----IRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYER 181 (302)
Q Consensus 109 I~tP~le~~d~~---~~~~g~~----~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~ 181 (302)
...+++-.|+.- ..+.|.. .....|.|-|..| +..+|..|++-.-++... -+-|+++||-|+.
T Consensus 63 lnq~lvVDYeHqTL~k~k~g~~a~~a~~~~~~~f~derG--l~~e~kWtpkA~~~i~~~--------Ey~ylSpVf~YDt 132 (357)
T COG4388 63 LNQDLVVDYEHQTLKKAKTGQQAPAAGWISKYVFDDERG--LMGEVKWTPKAKDMIDSG--------EYRYLSPVFEYDT 132 (357)
T ss_pred hcCCeeeeccHHHHHhccCCCCCCccceeeeeEeccccC--ceeecccChHHHHHHhcC--------CccccccccccCC
Confidence 356676666543 2233321 1234788877744 889999999988877653 3458999999984
Q ss_pred CCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhh
Q 022115 182 MTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHL 250 (302)
Q Consensus 182 ~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~ 250 (302)
.|.++|...+-+ -+.+.+..-.||..+...= .|.- -.=.......++.+|..+|..++.
T Consensus 133 --~G~~~elrmaAl--TndPaLdGM~~vaalsa~~--~LnP----~~e~~~mkE~LrqLl~~lg~~~ae 191 (357)
T COG4388 133 --LGNVRELRMAAL--TNDPALDGMAEVAALSAQN--SLNP----KQETSMMKEALRQLLGLLGDADAE 191 (357)
T ss_pred --CCCchhhhhhhh--cCCccccchHHHHHhhhhc--ccCc----cccccccHHHHHHHHhcccchhhh
Confidence 478888876543 3445555556766554432 2221 111233355666666666665543
No 168
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=23.52 E-value=1.6e+02 Score=30.31 Aligned_cols=119 Identities=20% Similarity=0.303 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHcCCeeecCCcccch-HHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCeEE
Q 022115 92 WLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPLKW 170 (302)
Q Consensus 92 ~i~~~l~~vf~~~Gy~eI~tP~le~~-d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~ 170 (302)
...+.|++.|-+.||+|+.-|++-.. ++|. .+|.+ ..-++| |.
T Consensus 51 ~ti~~lr~ayl~~gf~e~~np~iv~~~~~~~-qfg~e----a~avld-------------------------------r~ 94 (529)
T PRK06253 51 DTIERLREAYLRMGFEEMINPVIVDEQDIYK-QFGPE----AMAVLD-------------------------------RC 94 (529)
T ss_pred HHHHHHHHHHHhcChHhhcCceeecHHHHHH-hhCHH----HHHHHH-------------------------------Hh
Confidence 34567889999999999999988654 3443 24432 111111 44
Q ss_pred EEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhh
Q 022115 171 FAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHL 250 (302)
Q Consensus 171 ~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~ 250 (302)
||.|-.=| |.-|-.+|-.+.=-+|+|.+-...+.|-|.-+...+++= .|..-+++-.+...+++++.
T Consensus 95 fyl~glpr---p~vg~~~~~~~~i~~~~~~~~~~~~~e~l~~~lh~ykkg---------~~~gddl~~e~~~~l~~~~~- 161 (529)
T PRK06253 95 FYLAGLPR---PNVGISDEKIEQIEEILGRDLSEEKIESLREVLHSYKKG---------EIDGDDLVLEISKALEVSDE- 161 (529)
T ss_pred hhhcCCCC---CCCCcCHHHHHHHHHHhCCCCChhHHHHHHHHHHHhhcC---------CCccchhHHHHHHhcCCChH-
Confidence 55554333 455655555554456677655555566666655555543 33445667778888888885
Q ss_pred HHHHHHHHHhh
Q 022115 251 FGKVCIIIDKI 261 (302)
Q Consensus 251 ~~~v~~~ldkl 261 (302)
.+.++||+.
T Consensus 162 --~~~~~l~~v 170 (529)
T PRK06253 162 --MVLKILDEV 170 (529)
T ss_pred --HHHHHHHHh
Confidence 455666643
No 169
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=23.39 E-value=1.6e+02 Score=21.99 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=28.5
Q ss_pred HHHHHHHHHhh---hcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCChHH
Q 022115 251 FGKVCIIIDKI---EKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTE 297 (302)
Q Consensus 251 ~~~v~~~ldkl---~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~~~ 297 (302)
...|.++|.+- ..++.++|...|..-.++++.++.|...+.-.|++=
T Consensus 6 ~~~i~~Li~~gK~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~~~gI~V 55 (82)
T PF03979_consen 6 EEAIKKLIEKGKKKGYLTYDEINDALPEDDLDPEQIDEIYDTLEDEGIEV 55 (82)
T ss_dssp HHHHHHHHHHHHHHSS-BHHHHHHH-S-S---HHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHhhcCcCCHHHHHHHcCccCCCHHHHHHHHHHHHHCCCEE
Confidence 44555665432 247889999999888899999999999998888653
No 170
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=23.31 E-value=63 Score=23.20 Aligned_cols=39 Identities=18% Similarity=0.252 Sum_probs=25.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 253 KVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 253 ~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+|..++.+.... .+.++..+++++++.++.+++.+.-+|
T Consensus 4 ~i~~~l~~~~~~---S~~eLa~~~~~s~~~ve~mL~~l~~kG 42 (69)
T PF09012_consen 4 EIRDYLRERGRV---SLAELAREFGISPEAVEAMLEQLIRKG 42 (69)
T ss_dssp HHHHHHHHS-SE---EHHHHHHHTT--HHHHHHHHHHHHCCT
T ss_pred HHHHHHHHcCCc---CHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 355555544333 445566788999999999999888877
No 171
>PLN03152 hypothetical protein; Provisional
Probab=22.81 E-value=77 Score=28.85 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=9.1
Q ss_pred cccccchhcccccccCC
Q 022115 34 LLNPRSLCALSSASNQN 50 (302)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ 50 (302)
+++--.+|+.+.++.+-
T Consensus 37 ~~~t~~~~~~~~~~~~~ 53 (241)
T PLN03152 37 ILHTASLCASSLAAQNP 53 (241)
T ss_pred eeehhHHHHhhhhcCCC
Confidence 34444577766554433
No 172
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=22.11 E-value=2.1e+02 Score=25.24 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=42.2
Q ss_pred HHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHH
Q 022115 213 IITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEEL 286 (302)
Q Consensus 213 ~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l 286 (302)
..+.|+++|++ .-.++.|..+-.-..+. ..+++.++.+-.+++.+ |+.+.+.. +..|++.+.+..+
T Consensus 118 ~~~ll~k~Gi~--~~~~~~g~~K~~~~~~~--~~s~~~re~~~~~l~~~----~~~f~~~V~~~R~~~~~~~~~~ 184 (214)
T cd07022 118 QSKALEKAGLK--VTLIFAGAHKVDGNPDE--PLSDEARARLQAEVDAL----YAMFVAAVARNRGLSAAAVRAT 184 (214)
T ss_pred HHHHHHhCCCe--EEEEEcCCCccCCCCCC--CCCHHHHHHHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHh
Confidence 35688999997 45677776544333332 56777888888888876 55555554 3567766554443
No 173
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=21.83 E-value=2e+02 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.422 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHh
Q 022115 206 EAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRC 243 (302)
Q Consensus 206 DaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~ 243 (302)
..-.-.++.+.|.++|+. +..|.+++.+-++.++..
T Consensus 42 g~~i~~vv~~~l~~~~v~--~~~i~i~D~GAld~vI~a 77 (92)
T PRK13253 42 GDQIRAVILETLAKLGVE--NAQVKVDDKGALDCVIRA 77 (92)
T ss_pred HHHHHHHHHHHHHhcCCC--ceEEEEEcCCCCHHHHHH
Confidence 344566899999999998 899999999998888764
No 174
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=21.81 E-value=1.5e+02 Score=23.16 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHH
Q 022115 207 AELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIID 259 (302)
Q Consensus 207 aEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ld 259 (302)
..+-.++.+.|..+|++ +..+.+.+.+-|+..+++ +....+.+..+
T Consensus 43 ~~Ir~~v~etL~~lgV~--~~~v~v~DkGALDc~IrA-----R~~tAv~RA~~ 88 (92)
T TIGR01608 43 DDIESTVKETLKLLGVE--NAVVKVVDKGALNCVIKA-----RTLAAVQRAAE 88 (92)
T ss_pred HHHHHHHHHHHHHcCCc--eEEEEEEeCChHHHHHHH-----HHHHHHHHhhc
Confidence 45677999999999998 899999999999988874 34455555543
No 175
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=21.08 E-value=1.3e+02 Score=24.89 Aligned_cols=36 Identities=11% Similarity=0.243 Sum_probs=26.8
Q ss_pred CCCChhhHHHHHHHHHhhhcCCHHHHHH-----HHHHCCCCH
Q 022115 244 HSIPEHLFGKVCIIIDKIEKLPLDVIKN-----DLKSAGMSE 280 (302)
Q Consensus 244 ~gl~~~~~~~v~~~ldkl~k~~~~~v~~-----~L~~~gls~ 280 (302)
.|+++...++|.+++.+. +.++++.+. .+.++|+.+
T Consensus 80 ~GLD~~ak~EI~~IM~~~-~v~FDeARliy~~~~f~~NgI~p 120 (128)
T PF09435_consen 80 AGLDDAAKREIRRIMKRR-RVNFDEARLIYTERRFKKNGIGP 120 (128)
T ss_pred cCcCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999865 778877664 455666654
No 176
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=20.92 E-value=96 Score=20.31 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCChHHH
Q 022115 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTEL 298 (302)
Q Consensus 249 ~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~~~~ 298 (302)
+.+.++..++.. ..+ +++.-+.+|+|..++....+-..-.|+++|
T Consensus 5 ~~R~~ii~l~~~--G~s---~~~ia~~lgvs~~Tv~~w~kr~~~~G~~gL 49 (50)
T PF13384_consen 5 ERRAQIIRLLRE--GWS---IREIAKRLGVSRSTVYRWIKRYREEGLEGL 49 (50)
T ss_dssp -----HHHHHHH--T-----HHHHHHHHTS-HHHHHHHHT----------
T ss_pred hHHHHHHHHHHC--CCC---HHHHHHHHCcCHHHHHHHHHHccccccccc
Confidence 344555555543 223 344556778999999998888888888876
No 177
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=20.54 E-value=2.3e+02 Score=24.70 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=40.9
Q ss_pred HHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHH-HCCCCHHHHHHH
Q 022115 214 ITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLK-SAGMSEAAIEEL 286 (302)
Q Consensus 214 ~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~-~~gls~~~~~~l 286 (302)
.++|+++|++ ...++.|..+-.... ....+++.++.+-.++|.+ |+.+.+... ..|++.+.++.+
T Consensus 112 ~~~l~k~Gi~--~~~~~~g~~K~~~~~--~~~~s~~~~e~~~~~l~~~----~~~f~~~Va~~R~~~~~~~~~~ 177 (208)
T cd07023 112 EELLDKLGIE--RDTIKSGPGKDKGSP--DRPLTEEERAILQALVDDI----YDQFVDVVAEGRGMSGERLDKL 177 (208)
T ss_pred HHHHHhcCCc--eEEEecCCCccCCCC--CCCCCHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCHHHHHHh
Confidence 5588999998 456677643322222 2457777788888888876 555555553 567766655543
No 178
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=20.38 E-value=1e+02 Score=23.81 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHh
Q 022115 208 ELISSIITFFKRIGITASDVGFRISSRKVLQEVLRC 243 (302)
Q Consensus 208 Evi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~ 243 (302)
-+-.++.+.++.+|+. +..|.+++.+-++.++..
T Consensus 43 ~i~~vi~~~l~~~~i~--~~~v~i~D~GAld~vi~a 76 (87)
T PF06857_consen 43 QIRAVIRETLEELGIE--DAKVEINDKGALDCVIRA 76 (87)
T ss_pred HHHHHHHHHHHhcCCC--ceEEEEEeCCCCHHHHHH
Confidence 4456899999999998 799999999998887763
Done!