Query 022115
Match_columns 302
No_of_seqs 183 out of 1830
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 14:14:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lc0_A Histidyl-tRNA synthetas 100.0 2.9E-49 9.8E-54 388.6 26.3 235 66-300 22-256 (456)
2 3net_A Histidyl-tRNA synthetas 100.0 3.7E-48 1.2E-52 381.6 24.1 223 68-294 7-247 (465)
3 3od1_A ATP phosphoribosyltrans 100.0 2.2E-46 7.6E-51 362.6 26.7 218 71-294 8-225 (400)
4 4g84_A Histidine--tRNA ligase, 100.0 4.5E-45 1.5E-49 357.9 24.5 223 66-294 7-233 (464)
5 4g85_A Histidine-tRNA ligase, 100.0 4.9E-45 1.7E-49 363.4 25.1 223 66-294 60-286 (517)
6 1z7m_A ATP phosphoribosyltrans 100.0 1.6E-44 5.4E-49 343.4 23.8 218 66-294 15-235 (344)
7 3rac_A Histidine-tRNA ligase; 100.0 6.9E-45 2.4E-49 349.2 18.1 215 72-294 22-244 (373)
8 1wu7_A Histidyl-tRNA synthetas 100.0 1.1E-42 3.6E-47 339.3 25.8 219 71-294 4-223 (434)
9 4e51_A Histidine--tRNA ligase; 100.0 5.2E-37 1.8E-41 302.4 22.7 166 70-237 29-198 (467)
10 1h4v_B Histidyl-tRNA synthetas 100.0 1.9E-36 6.3E-41 293.7 22.8 163 72-236 2-168 (421)
11 1htt_A Histidyl-tRNA synthetas 100.0 6.6E-37 2.2E-41 297.1 18.4 167 70-238 1-171 (423)
12 1usy_A ATP phosphoribosyltrans 100.0 1.4E-34 4.9E-39 266.9 15.9 180 92-294 5-187 (275)
13 1qe0_A Histidyl-tRNA synthetas 100.0 7.6E-33 2.6E-37 268.1 14.5 162 73-236 2-168 (420)
14 3a32_A Probable threonyl-tRNA 100.0 2.5E-28 8.6E-33 240.6 14.8 157 75-235 37-210 (471)
15 2i4l_A Proline-tRNA ligase; al 99.9 3.9E-28 1.3E-32 238.4 11.6 166 71-242 51-227 (458)
16 1evl_A Threonyl-tRNA synthetas 99.9 1E-26 3.6E-31 224.4 16.8 158 73-235 16-183 (401)
17 2j3l_A Prolyl-tRNA synthetase; 99.9 1.4E-26 4.7E-31 232.9 16.8 164 74-241 34-206 (572)
18 1nyr_A Threonyl-tRNA synthetas 99.9 4E-27 1.4E-31 240.1 12.8 160 73-235 257-426 (645)
19 1nj8_A Proline-tRNA synthetase 99.9 5.7E-26 1.9E-30 223.2 18.0 162 69-233 19-195 (459)
20 1hc7_A Prolyl-tRNA synthetase; 99.9 2.9E-26 1E-30 226.2 15.7 163 69-234 26-201 (477)
21 1qf6_A THRRS, threonyl-tRNA sy 99.9 5.8E-24 2E-28 216.6 15.7 157 74-235 258-424 (642)
22 1nj1_A PROR, proline-tRNA synt 99.9 1.9E-23 6.4E-28 207.4 15.7 160 70-233 53-227 (501)
23 3uh0_A Threonyl-tRNA synthetas 99.9 9.4E-23 3.2E-27 200.4 16.1 159 74-234 51-229 (460)
24 3ial_A Prolyl-tRNA synthetase; 99.9 1.3E-21 4.3E-26 194.3 14.1 155 69-223 36-205 (518)
25 4hvc_A Bifunctional glutamate/ 99.8 1.9E-20 6.4E-25 186.2 16.5 155 69-223 43-211 (519)
26 2zt5_A Glycyl-tRNA synthetase; 99.8 9.2E-20 3.1E-24 186.8 12.8 152 74-229 88-375 (693)
27 1ati_A Glycyl-tRNA synthetase; 99.8 2.2E-19 7.6E-24 178.2 14.1 147 74-223 26-270 (505)
28 2dq3_A Seryl-tRNA synthetase; 99.8 1.8E-19 6.1E-24 175.4 12.5 144 76-223 161-316 (425)
29 1ses_A Seryl-tRNA synthetase; 99.7 6.8E-18 2.3E-22 164.1 13.7 143 77-223 156-312 (421)
30 3dsq_A Pyrrolysyl-tRNA synthet 99.7 1.1E-17 3.9E-22 155.0 13.5 134 89-223 72-205 (288)
31 2dq0_A Seryl-tRNA synthetase; 99.7 2.3E-17 7.8E-22 161.7 12.9 152 76-234 182-345 (455)
32 2cja_A Seryl-tRNA synthetase; 99.7 1.8E-16 6.2E-21 157.3 10.1 151 71-223 215-407 (522)
33 3qtc_A Pyrrolysyl-tRNA synthet 99.6 4.3E-15 1.5E-19 137.5 16.0 128 90-223 79-209 (290)
34 3vbb_A Seryl-tRNA synthetase, 99.6 4.3E-14 1.5E-18 139.8 15.5 151 77-231 191-363 (522)
35 1wle_A Seryl-tRNA synthetase; 99.5 5.7E-14 2E-18 138.8 14.5 149 77-229 209-371 (501)
36 3lss_A Seryl-tRNA synthetase; 99.5 4.6E-13 1.6E-17 131.6 15.8 151 76-231 197-361 (484)
37 3qne_A Seryl-tRNA synthetase, 99.5 4.7E-13 1.6E-17 131.5 14.5 151 76-231 174-338 (485)
38 1nnh_A Asparaginyl-tRNA synthe 99.5 4.7E-13 1.6E-17 124.2 12.7 126 83-221 11-141 (294)
39 3err_A Fusion protein of micro 99.4 2E-12 6.8E-17 128.9 14.9 149 76-231 264-426 (536)
40 1x54_A Asparaginyl-tRNA synthe 99.3 9.3E-12 3.2E-16 121.3 12.1 115 85-220 133-250 (434)
41 1wyd_A Hypothetical aspartyl-t 99.3 2.3E-11 8E-16 118.3 11.8 115 85-220 132-249 (429)
42 1n9w_A Aspartyl-tRNA synthetas 99.2 1.4E-11 4.7E-16 119.7 8.6 116 85-220 123-241 (422)
43 1eov_A ASPRS, aspartyl-tRNA sy 99.1 4.2E-10 1.4E-14 111.1 12.5 100 86-201 177-280 (487)
44 1g5h_A Mitochondrial DNA polym 99.0 9.5E-11 3.2E-15 114.8 4.1 150 78-227 52-231 (454)
45 3mf2_A BLL0957 protein; aminoa 99.0 3E-09 1E-13 100.1 13.5 150 76-232 53-233 (346)
46 3a74_A Lysyl-tRNA synthetase; 99.0 3.1E-09 1.1E-13 105.0 13.5 117 86-220 173-291 (493)
47 3l4g_A Phenylalanyl-tRNA synth 98.8 3.5E-08 1.2E-12 97.4 14.9 161 86-248 223-450 (508)
48 3ikl_A DNA polymerase subunit 98.8 1.7E-08 5.9E-13 98.6 12.4 137 77-228 93-242 (459)
49 1e1o_A Lysyl-tRNA synthetase, 98.8 4.6E-08 1.6E-12 96.9 14.3 116 86-218 182-298 (504)
50 3a5y_A GENX, putative lysyl-tR 98.8 4E-08 1.4E-12 93.0 13.0 122 83-220 32-158 (345)
51 2du3_A O-phosphoseryl-tRNA syn 98.7 4.5E-08 1.6E-12 97.1 11.4 80 142-223 180-260 (534)
52 1b7y_A Phers, protein (phenyla 98.7 5.5E-07 1.9E-11 85.3 15.9 145 70-222 85-247 (350)
53 2du7_A O-phosphoseryl-tRNA syn 98.6 6.9E-07 2.4E-11 88.7 13.8 133 88-222 57-271 (549)
54 2xgt_A Asparaginyl-tRNA synthe 98.5 8E-07 2.7E-11 86.5 13.8 100 85-201 130-232 (435)
55 3nem_A Aspartyl-tRNA synthetas 98.5 6.3E-07 2.1E-11 87.3 12.9 104 86-203 136-240 (438)
56 2rhq_A Phenylalanyl-tRNA synth 98.5 2.1E-06 7.2E-11 79.3 13.5 145 68-222 35-186 (294)
57 2odr_B Phosphoseryl-tRNA synth 98.4 1E-05 3.6E-10 81.2 16.6 133 88-222 65-278 (648)
58 2odr_A Phosphoseryl-tRNA synth 98.3 1.1E-05 3.7E-10 81.1 16.6 133 88-222 65-278 (665)
59 2odr_D Phosphoseryl-tRNA synth 98.3 1.1E-05 3.9E-10 81.2 16.6 133 88-222 65-278 (685)
60 1c0a_A Aspartyl tRNA synthetas 98.3 5E-06 1.7E-10 83.7 13.8 100 87-201 138-240 (585)
61 2odr_C Phosphoseryl-tRNA synth 98.3 1.2E-05 4.2E-10 81.1 16.5 133 88-222 65-278 (701)
62 1l0w_A Aspartyl-tRNA synthetas 98.3 4.6E-06 1.6E-10 83.8 13.4 101 86-201 143-246 (580)
63 3bju_A Lysyl-tRNA synthetase; 98.3 8.7E-06 3E-10 80.9 14.2 103 86-201 175-278 (521)
64 4ex5_A Lysine--tRNA ligase; st 98.3 9.2E-06 3.2E-10 80.7 14.1 103 86-201 203-306 (529)
65 3m4p_A Ehasnrs, asparaginyl-tR 98.3 7.1E-06 2.4E-10 80.3 12.7 101 86-201 155-256 (456)
66 3i7f_A Aspartyl-tRNA synthetas 98.1 2E-05 6.9E-10 78.5 12.5 98 86-199 243-344 (548)
67 3ica_A Phenylalanyl-tRNA synth 98.1 4.5E-05 1.5E-09 67.0 13.1 133 90-223 6-154 (213)
68 3ig2_A Phenylalanyl-tRNA synth 98.1 4.7E-05 1.6E-09 66.9 13.1 133 90-223 6-154 (213)
69 4ah6_A Aspartate--tRNA ligase, 98.0 6.2E-05 2.1E-09 76.0 14.6 115 87-220 148-265 (617)
70 3l4g_B Phenylalanyl-tRNA synth 98.0 4.2E-05 1.4E-09 77.0 13.3 151 67-223 373-525 (589)
71 2rhq_B Phenylalanyl-tRNA synth 97.9 6.2E-05 2.1E-09 78.3 11.4 150 67-222 473-634 (795)
72 3pco_A Phenylalanyl-tRNA synth 97.8 3.1E-05 1.1E-09 72.6 7.4 139 69-220 90-234 (327)
73 1b7y_B Phers, protein (phenyla 97.5 0.00049 1.7E-08 71.5 11.8 144 67-222 468-622 (785)
74 3cmq_A Phenylalanyl-tRNA synth 97.4 0.0011 3.8E-08 63.9 12.0 102 87-198 47-164 (415)
75 3pco_B Phenylalanyl-tRNA synth 96.4 0.013 4.5E-07 60.9 10.7 127 93-222 494-630 (795)
76 3fia_A Intersectin-1; EH 1 dom 70.7 7.3 0.00025 30.8 5.4 49 246-294 27-79 (121)
77 1c07_A Protein (epidermal grow 68.3 12 0.00042 27.2 6.0 49 246-294 4-57 (95)
78 1eh2_A EPS15; calcium binding, 60.1 18 0.00062 27.3 5.7 49 246-294 9-61 (106)
79 1fi6_A EH domain protein REPS1 57.9 14 0.00048 26.6 4.6 48 247-294 4-56 (92)
80 2pmy_A RAS and EF-hand domain- 54.4 22 0.00076 25.2 5.2 48 247-294 22-74 (91)
81 2lv7_A Calcium-binding protein 49.0 28 0.00094 25.7 5.1 51 244-294 28-85 (100)
82 12as_A Asparagine synthetase; 47.0 1.7E+02 0.0059 26.8 11.0 110 88-202 10-126 (330)
83 2kgr_A Intersectin-1; structur 45.4 39 0.0013 25.3 5.5 49 246-294 8-61 (111)
84 1qjt_A EH1, epidermal growth f 44.5 37 0.0013 24.9 5.2 32 263-294 27-58 (99)
85 2jvf_A De novo protein M7; tet 36.4 38 0.0013 24.3 3.7 34 200-235 56-89 (96)
86 1sfx_A Conserved hypothetical 36.1 1.1E+02 0.0038 21.5 6.9 55 236-294 8-62 (109)
87 1s6c_A KV4 potassium channel-i 35.3 90 0.0031 24.3 6.5 57 237-293 6-68 (183)
88 1iq3_A Ralbp1-interacting prot 35.1 14 0.00047 28.0 1.4 49 246-294 16-69 (110)
89 3mse_B Calcium-dependent prote 34.8 56 0.0019 25.9 5.2 46 248-293 35-85 (180)
90 3ff5_A PEX14P, peroxisomal bio 34.7 1E+02 0.0035 20.7 5.9 25 263-287 27-51 (54)
91 2ktg_A Calmodulin, putative; e 32.6 97 0.0033 20.8 5.6 49 245-293 7-62 (85)
92 2jq6_A EH domain-containing pr 31.9 79 0.0027 25.1 5.5 32 263-294 66-97 (139)
93 2g7r_A Mucosa-associated lymph 31.5 34 0.0012 26.7 3.1 32 244-275 22-54 (117)
94 2opo_A Polcalcin CHE A 3; calc 31.2 1E+02 0.0035 20.8 5.6 48 246-293 5-58 (86)
95 3hy0_A Alanyl-tRNA synthetase; 31.2 1.3E+02 0.0046 28.7 7.7 131 91-249 5-151 (441)
96 1g8i_A Frequenin, neuronal cal 31.2 1.5E+02 0.0051 23.1 7.3 60 234-293 10-75 (190)
97 1ngr_A P75 low affinity neurot 30.6 32 0.0011 25.0 2.7 37 245-287 6-42 (85)
98 3oq9_A Tumor necrosis factor r 30.0 77 0.0026 23.2 4.7 23 265-287 11-33 (86)
99 3mva_O Transcription terminati 29.5 48 0.0016 30.1 4.3 56 233-291 50-112 (343)
100 1s1e_A KV channel interacting 29.3 2E+02 0.0067 23.7 8.0 59 236-294 38-102 (224)
101 1j5w_A Glycyl-tRNA synthetase 29.0 1.5E+02 0.0052 26.5 7.2 55 165-224 57-115 (298)
102 3c1d_A Protein ORAA, regulator 28.1 1.8E+02 0.0063 23.1 7.3 23 264-286 80-102 (159)
103 3rf1_A Glycyl-tRNA synthetase 27.9 1.5E+02 0.0051 26.7 6.9 99 88-224 25-127 (311)
104 1sfu_A 34L protein; protein/Z- 27.3 68 0.0023 23.1 3.8 46 249-294 12-57 (75)
105 1avs_A Troponin C; muscle cont 26.7 1.5E+02 0.0052 20.1 6.2 49 246-294 14-69 (90)
106 2d8n_A Recoverin; structural g 26.6 2.4E+02 0.0082 22.3 8.0 59 235-293 19-83 (207)
107 2ztg_A Alanyl-tRNA synthetase; 26.0 71 0.0024 32.7 5.1 111 89-224 61-181 (739)
108 1j7q_A CAVP, calcium vector pr 25.9 1.5E+02 0.0053 19.9 6.1 47 245-291 7-63 (86)
109 2joj_A Centrin protein; N-term 24.0 1.2E+02 0.0042 19.7 4.7 47 247-293 2-55 (77)
110 3qrx_A Centrin; calcium-bindin 22.8 2.1E+02 0.0072 21.6 6.6 51 244-294 20-77 (169)
111 2kn2_A Calmodulin; S MAPK phos 22.6 1.9E+02 0.0063 19.7 6.5 29 264-292 26-56 (92)
112 3ezq_A Tumor necrosis factor r 22.3 1.6E+02 0.0056 22.7 5.5 25 263-287 17-41 (115)
113 1pva_A Parvalbumin; calcium bi 22.2 1.6E+02 0.0055 20.7 5.4 55 240-294 30-94 (110)
114 3bgh_A Protein HPAA, putative 21.6 58 0.002 28.5 3.0 105 78-200 47-155 (236)
115 3dfg_A Xcrecx, regulatory prot 21.4 2.9E+02 0.0099 22.1 7.2 56 233-288 47-106 (162)
116 2ccm_A Calexcitin; EF hand, ca 21.3 2.5E+02 0.0085 21.8 6.8 44 251-294 108-156 (191)
117 2i9i_A Hypothetical protein; P 21.2 78 0.0027 27.9 3.8 63 79-149 58-121 (254)
118 2k02_A Ferrous iron transport 20.8 59 0.002 23.9 2.5 30 265-294 15-44 (87)
119 1ich_A TNF-1, tumor necrosis f 20.4 64 0.0022 25.0 2.7 17 270-286 29-45 (112)
120 1xn7_A Hypothetical protein YH 20.1 57 0.0019 23.3 2.3 30 265-294 15-44 (78)
No 1
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=100.00 E-value=2.9e-49 Score=388.62 Aligned_cols=235 Identities=49% Similarity=0.908 Sum_probs=215.7
Q ss_pred ccccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEee
Q 022115 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (302)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~L 145 (302)
+.+.|+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+.+.++||+|.|++|+.++|
T Consensus 22 ~~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~L 101 (456)
T 3lc0_A 22 MQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVAL 101 (456)
T ss_dssp ---CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEE
T ss_pred hhhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEec
Confidence 56778999999999999999999999999999999999999999999999999998877887788999999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCC
Q 022115 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITAS 225 (302)
Q Consensus 146 RpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~ 225 (302)
|||+|+|+||+++++....++|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|+.+.
T Consensus 102 Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~lgl~~~ 181 (456)
T 3lc0_A 102 RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSK 181 (456)
T ss_dssp CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999877667899999999999999999999999999999999999999999999999999999999322
Q ss_pred ceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCChHHHhc
Q 022115 226 DVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKSLTELEG 300 (302)
Q Consensus 226 ~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g~~~~~~ 300 (302)
++.|+|||+++++++++.+|++++.+..+++++|+++++++++++++|.++|++++.++.|.+++.+++++.+.+
T Consensus 182 ~~~i~in~~~il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~~~~~l~~ 256 (456)
T 3lc0_A 182 DVGIKVNSRKVLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLKSIDEIAQ 256 (456)
T ss_dssp TEEEEEEEHHHHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCSHHHHHH
T ss_pred ceEEEEcCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999999998888776654
No 2
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=100.00 E-value=3.7e-48 Score=381.64 Aligned_cols=223 Identities=26% Similarity=0.466 Sum_probs=203.0
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccc-cEEEeeC--------
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR-------- 138 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~-~~~f~D~-------- 138 (302)
+.++++++|+||+|++|+++..+++|++.++++|++|||++|.||+||+.++|..+ | +..++ ||+|.|+
T Consensus 7 ~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G-~~~ke~m~~~~d~~~~g~~~~ 84 (465)
T 3net_A 7 NDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-G-NQGDNIIYGLEPILPPNRQAE 84 (465)
T ss_dssp --CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-G-CC--CBEEEEEEEC-------
T ss_pred CccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-C-CCCccceEEEecccccccccc
Confidence 45688999999999999999999999999999999999999999999999999988 7 45677 9999998
Q ss_pred -------CCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhH--HHHH
Q 022115 139 -------GNRRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTA--EAEL 209 (302)
Q Consensus 139 -------~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~a--DaEv 209 (302)
+|+.++||||+|+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+ |+||
T Consensus 85 ~~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~~~~a~~DaEv 164 (465)
T 3net_A 85 KDKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGREKLSLLYDAQM 164 (465)
T ss_dssp ---------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSSCCCHHHHHHH
T ss_pred cccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCCCccchhhHHH
Confidence 3899999999999999999998765678999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHH
Q 022115 210 ISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRV 289 (302)
Q Consensus 210 i~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l 289 (302)
|.++.++|+.+|+. +++|+|||+++++++++.+|++++++..++++||++++.++++++++|.+.|++.+.++.+..+
T Consensus 165 i~l~~~~l~~lgl~--~~~i~in~~~~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l 242 (465)
T 3net_A 165 PAIITEIFEAVNIG--DFVIRINNRKVLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDF 242 (465)
T ss_dssp HHHHHHHHHHHTCS--CEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC--ceEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999997 7999999999999999999999998999999999999999999999999999999999999999
Q ss_pred hcCCC
Q 022115 290 LSIKS 294 (302)
Q Consensus 290 ~~~~g 294 (302)
+.++|
T Consensus 243 ~~~~g 247 (465)
T 3net_A 243 VKIDG 247 (465)
T ss_dssp HTCCS
T ss_pred HHhcC
Confidence 99887
No 3
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=100.00 E-value=2.2e-46 Score=362.60 Aligned_cols=218 Identities=22% Similarity=0.323 Sum_probs=203.5
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
+.+++|+|++||+|++++++++|++.++++|++|||++|.||+||+.++|.+. |+...++||+|.|++|+.++||||+|
T Consensus 8 ~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g~~~~~~my~f~D~~g~~l~LRpd~T 86 (400)
T 3od1_A 8 FMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-SAILDQQLFKLLDQQGNTLVLRPDMT 86 (400)
T ss_dssp CTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-SSSCGGGSCEEECTTSCEEEECSCSH
T ss_pred hcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccceEEEECCCCCEEEECCCCH
Confidence 55899999999999999999999999999999999999999999999999875 66678999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFR 230 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~ 230 (302)
+|+||+++++....+.|+|+||+|+|||+++|+.||+|||+|+|+|+||.+++.+|+|+|.++.++|+.+|++ +++|+
T Consensus 87 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~lgl~--~~~i~ 164 (400)
T 3od1_A 87 APIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDGTASADGEVIALMIAALKRAGLS--EFKVA 164 (400)
T ss_dssp HHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTCC--SEEEE
T ss_pred HHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHHCCCC--ceEEE
Confidence 9999999998666678999999999999999999999999999999999999999999999999999999997 79999
Q ss_pred eCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 231 ISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 231 igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
|||+++++++++.+|++++.+..++++++++ +..++++.+++++++++..+.|..++.+.|
T Consensus 165 l~~~~i~~~ll~~~~~~~~~~~~l~~~l~~~---~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g 225 (400)
T 3od1_A 165 IGHVGYVNALLMDVVGNEQRADRLRRFLYEK---NYVGYREHVKSLNLSTIDKSRLMNLLSLRG 225 (400)
T ss_dssp EEEHHHHHHHHHHHHCCHHHHHHHHHHHHTT---CHHHHHHHHHHSSSCHHHHHHHHHGGGCEE
T ss_pred ecCHHHHHHHHHHcCCCHHHHHHHHHHHHhc---ChhHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999976 677888889999999999999999998876
No 4
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.5e-45 Score=357.92 Aligned_cols=223 Identities=25% Similarity=0.477 Sum_probs=198.0
Q ss_pred ccccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEee
Q 022115 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (302)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~L 145 (302)
..++.+.+++|+||+||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+. .++||+|.|++|+.++|
T Consensus 7 ~~~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~-~~~~y~f~D~~g~~l~L 85 (464)
T 4g84_A 7 ELRRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 85 (464)
T ss_dssp ------CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC-----CCCBBCCCSSCCEEE
T ss_pred hHhhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcC-cceeEEEECCCCCEEEe
Confidence 56667889999999999999999999999999999999999999999999999998887765 57899999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCC--CCCCccceeEeeEEEeccC-ChhHHHHHHHHHHHHHHHcCC
Q 022115 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVP-AVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 146 RpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~--~~gr~rEf~Q~g~EiiG~~-~~~aDaEvi~l~~eil~~lgl 222 (302)
|||+|+|+||+++++. ..|+|+||+|+|||+++| +.||+|||+|+|+|+||.. +..+|+|+|.++.++|+.+|+
T Consensus 86 RPd~T~~~aR~~~~~~---~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 162 (464)
T 4g84_A 86 RYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 162 (464)
T ss_dssp CSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCcHHHHHHHHhcC---CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCC
Confidence 9999999999999874 369999999999999988 4679999999999999974 457899999999999999999
Q ss_pred CCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHHHHHhcCCC
Q 022115 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 223 ~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l~~l~~~~g 294 (302)
. ++.++|||+++++++++.++++++.+..++.++|++++.+++++++.+ ...+++++.++.|..++...|
T Consensus 163 ~--~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g 233 (464)
T 4g84_A 163 G--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 233 (464)
T ss_dssp C--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEE
T ss_pred C--CcceeecchhhHHHHHHhhcCcHHHHHHHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 8 899999999999999999999999999999999999999999999877 578999999999999888775
No 5
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=100.00 E-value=4.9e-45 Score=363.41 Aligned_cols=223 Identities=26% Similarity=0.487 Sum_probs=198.8
Q ss_pred ccccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEee
Q 022115 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVAL 145 (302)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~L 145 (302)
+.+.++.+++|+||+||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+. .+.||+|.|++|+.++|
T Consensus 60 ~~~~~~~l~~P~G~~D~lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~-~~~my~f~D~~g~~l~L 138 (517)
T 4g85_A 60 ESKQKFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGED-SKLIYDLKDQGGELLSL 138 (517)
T ss_dssp --CCCCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC-------CSCBBCCTTSCCEEE
T ss_pred ccccceeeeCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcC-cceeEEEECCCCCEEEe
Confidence 45567889999999999999999999999999999999999999999999999998887765 57899999999999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCC--CCCCccceeEeeEEEeccCC-hhHHHHHHHHHHHHHHHcCC
Q 022115 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA-VTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 146 RpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~--~~gr~rEf~Q~g~EiiG~~~-~~aDaEvi~l~~eil~~lgl 222 (302)
|||+|+|+||+++++. ..|+|+||+|+|||+++| +.||+|||+|+|+|+||..+ ..+|+|+|.++.++|+.+|+
T Consensus 139 RPd~T~~~aR~~~~~~---~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl 215 (517)
T 4g85_A 139 RYDLTVPFARYLAMNK---LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQI 215 (517)
T ss_dssp CSCSHHHHHHHHHHTT---CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCcHHHHHHHHhCC---CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999874 369999999999999988 56899999999999999754 56899999999999999999
Q ss_pred CCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHH-HHCCCCHHHHHHHHHHhcCCC
Q 022115 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDL-KSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 223 ~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L-~~~gls~~~~~~l~~l~~~~g 294 (302)
. ++.++|||+++++++++.+|++++.+..++.++|++++.+++++++.+ .+.+++++.++.|..++...|
T Consensus 216 ~--~~~i~in~~~~l~~~~~~~~~~~~~~~~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g 286 (517)
T 4g85_A 216 G--DFLVKVNDRRILDGMFAICGVSDSKFRTICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHG 286 (517)
T ss_dssp C--CEEEEEEEHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCB
T ss_pred C--cccccccchhhHHHHHHhhcchHHHHHHHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 8 899999999999999999999999999999999999999999999877 589999999999999988876
No 6
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=100.00 E-value=1.6e-44 Score=343.37 Aligned_cols=218 Identities=19% Similarity=0.300 Sum_probs=190.1
Q ss_pred ccccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhh---hhccccccccEEEeeCCCCe
Q 022115 66 DDLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIR---KAGEEIRDQLYCFEDRGNRR 142 (302)
Q Consensus 66 ~~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~---~~g~~~~~~~~~f~D~~G~~ 142 (302)
....+.++++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|.+ +.++...++||+|.|++|+.
T Consensus 15 ~~~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~ 94 (344)
T 1z7m_A 15 GRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQS 94 (344)
T ss_dssp -------CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCE
T ss_pred chhhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCE
Confidence 445667899999999999999999999999999999999999999999999999976 33445678999999999999
Q ss_pred EeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 143 l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
++||||+|+++||+++++ ..+.|+|+||+|+|||+++|+.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|+
T Consensus 95 l~LRpd~T~~~aR~~~~~--~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~~lgl 172 (344)
T 1z7m_A 95 ITLRYDFTLPLVRLYSQI--KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGESADKSELEILSLALQVIEQLGL 172 (344)
T ss_dssp EEECCCSHHHHHHHHHTC--CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecCCCCcHHHHHHHHhc--CCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999997 346899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 223 TASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 223 ~~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+ +++|+|||++++++++ |++++.+..++++++++ +...+++.+.+++++++..+.|..++.+ |
T Consensus 173 ~--~~~i~l~~~gi~~~~l---g~~~~~~~~l~~~l~~~---~~~~~~~~l~~~~l~~~~~~~l~~l~~~-g 235 (344)
T 1z7m_A 173 N--KTVFEIGSAKFFQRLC---QLADGSTELLTELLLKK---DLSGLNAFIEKNNFSKELRGLLKEIFIT-N 235 (344)
T ss_dssp S--SEEEEEEEHHHHHHHH---HHTTTCHHHHHHHHHTT---CHHHHHHHHTTSCCCHHHHHHHHHHTTC-C
T ss_pred C--cEEEEECCHHHHHHHh---CCCHHHHHHHHHHHHhh---CHHHHHHHHHhcCCCHHHHHHHHHHHhc-C
Confidence 7 7999999999999999 78888899999999976 6667888888899999999999999888 5
No 7
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=100.00 E-value=6.9e-45 Score=349.22 Aligned_cols=215 Identities=18% Similarity=0.254 Sum_probs=185.3
Q ss_pred ccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccc-cccEEEeeCCCCeEeeCCCCh
Q 022115 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIR-DQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 72 ~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~-~~~~~f~D~~G~~l~LRpDlT 150 (302)
.+++|+|++||+|.+++.+++|++.++++|++|||++|.||+||+.++|..+ |+... ++||+|.|++|+.++||||+|
T Consensus 22 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~-g~~~~~~~my~~~D~~g~~l~LRpd~T 100 (373)
T 3rac_A 22 FADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRA-RSPESSRDWIRLFDGGGDAVALRPEMT 100 (373)
T ss_dssp CCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTT-SCTTSCCCCCBCCCCSSSCEEECSSSH
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhc-CCccchhceEEEECCCCCEEEECCcCH
Confidence 3689999999999999999999999999999999999999999999999875 66666 899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCC------CCCCccceeEeeEEEeccC-ChhHHHHHHHHHHHHHHHcCCC
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERM------TRGRRREHYQWNMDIIGVP-AVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~------~~gr~rEf~Q~g~EiiG~~-~~~aDaEvi~l~~eil~~lgl~ 223 (302)
+|+||+++++....+.|+|+||+|+|||++++ +.||+|||+|+|+|+||.+ ++.+|+|+|.++.++|+.+|++
T Consensus 101 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~lgl~ 180 (373)
T 3rac_A 101 PSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAAAGVR 180 (373)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999875545789999999999999998 8999999999999999998 8999999999999999999997
Q ss_pred CCceEEEeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 224 ASDVGFRISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 224 ~~~~~I~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++|+|||+++++++++.+|++++.+.+++++|+++++.+++++.+.| +++..+.|.+++.+.|
T Consensus 181 --~~~i~l~~~~i~~~ll~~~g~~~~~~~~l~~~l~k~~~~~~~~~~~~l-----~~~~~~~l~~l~~l~g 244 (373)
T 3rac_A 181 --HHRIVVSHARLVPRLLDALGISASLSRAFLACLTSGNYVQFRELWQLH-----AAKDVDLLANLLTWSP 244 (373)
T ss_dssp --SCEEEEEETTHHHHHHHHTTCCHHHHHHHHHHHHHTCHHHHHHHHHHH-----CSCCSCHHHHHHHBCC
T ss_pred --ceEEEecCHHHHHHHHHHcCCCHHHHHHHHHHHHhcChhhHHHHHHhc-----CHHHHHHHHHHHHHhC
Confidence 799999999999999999999999999999999988655555554443 3333444445555554
No 8
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.1e-42 Score=339.34 Aligned_cols=219 Identities=37% Similarity=0.695 Sum_probs=205.3
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCCh
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
+.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.+++|+...++||+|.|++|+.++||||+|
T Consensus 4 ~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t 83 (434)
T 1wu7_A 4 LQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEAT 83 (434)
T ss_dssp CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSH
T ss_pred cccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCCh
Confidence 56789999999999999999999999999999999999999999999999887787778899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCc-eEE
Q 022115 151 PSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASD-VGF 229 (302)
Q Consensus 151 ~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~-~~I 229 (302)
+++||+++++ +..++|+|+||+|+|||+++|+.||.|||+|+|+|+||.++..+|+|++.++.++|+.+|++ + +.|
T Consensus 84 ~~~aR~~~~~-~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~~~~ad~E~i~~~~~~l~~lgl~--~~~~i 160 (434)
T 1wu7_A 84 PSTVRMVTSR-KDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSDSPEADAEVIALASSILDRLGLQ--DIYEI 160 (434)
T ss_dssp HHHHHHHTTC-TTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHTTTT--TSEEE
T ss_pred HHHHHHHHhc-CCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCCChHhhHHHHHHHHHHHHHcCCC--CceEE
Confidence 9999999988 43468999999999999999999999999999999999999999999999999999999996 7 999
Q ss_pred EeCChHHHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 230 RISSRKVLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 230 ~igh~~il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
++||+++++++++.+| ++++. .++.+++++++..++++++.|+..|++.+.++.+.+++...|
T Consensus 161 ~l~~~g~~~~~~~~~g-~~~~~-~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 223 (434)
T 1wu7_A 161 RINSRKIMEEIIGGMT-SSDPF-SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTR 223 (434)
T ss_dssp EEEEHHHHHHHHHTTC-SSCHH-HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCB
T ss_pred EECChhhHHHHHHHhC-cHhHH-HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Confidence 9999999999999877 88877 999999999999999999999999999999999988886643
No 9
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=5.2e-37 Score=302.37 Aligned_cols=166 Identities=26% Similarity=0.478 Sum_probs=152.5
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCC-CCeEee
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRG-NRRVAL 145 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~-G~~l~L 145 (302)
|+++++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|.++.|+. ..++||+|.|++ |+.++|
T Consensus 29 ~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~L 108 (467)
T 4e51_A 29 LEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTL 108 (467)
T ss_dssp -CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEE
T ss_pred hcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEe
Confidence 6789999999999999999999999999999999999999999999999998876773 468999999999 999999
Q ss_pred CCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCC
Q 022115 146 RPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITAS 225 (302)
Q Consensus 146 RpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~ 225 (302)
|||+|+++||+++.+....++|+|+||+|+|||+++|+.||.|||+|+|+|+||.++..+|+|+|.++.++|+.+|++
T Consensus 109 RPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~lGl~-- 186 (467)
T 4e51_A 109 RPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWEDLGLT-- 186 (467)
T ss_dssp CSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHHHTCC--
T ss_pred CcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999987655578999999999999999999999999999999999999999999999999999999997
Q ss_pred ceEEEeCChHHH
Q 022115 226 DVGFRISSRKVL 237 (302)
Q Consensus 226 ~~~I~igh~~il 237 (302)
++.|+|||+++.
T Consensus 187 ~~~i~in~~g~~ 198 (467)
T 4e51_A 187 GIKLEINSLGLA 198 (467)
T ss_dssp CEEEEEEECCCH
T ss_pred ceEEEEeCCCch
Confidence 799999997653
No 10
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.9e-36 Score=293.74 Aligned_cols=163 Identities=26% Similarity=0.481 Sum_probs=152.1
Q ss_pred ccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeCCC
Q 022115 72 DVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALRPE 148 (302)
Q Consensus 72 ~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G~~l~LRpD 148 (302)
.+++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|..+.|+. ..++||+|.|++|+.++||||
T Consensus 2 ~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd 81 (421)
T 1h4v_B 2 TARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPE 81 (421)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCc
Confidence 57899999999999999999999999999999999999999999999998776763 567999999999999999999
Q ss_pred ChHHHHHHHHHhC-CCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCce
Q 022115 149 LTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (302)
Q Consensus 149 lT~~iaR~~a~~~-~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~ 227 (302)
+|+++||+++++. ...++|+|+||+|+|||+++|+.||.|||+|+|+|+||.++..+|+|++.++.++|+.+|++ ++
T Consensus 82 ~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~~lgl~--~~ 159 (421)
T 1h4v_B 82 GTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLR--RL 159 (421)
T ss_pred chHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCCChhhhHHHHHHHHHHHHHcCCC--ce
Confidence 9999999999763 33468999999999999999999999999999999999999999999999999999999997 79
Q ss_pred EEEeCChHH
Q 022115 228 GFRISSRKV 236 (302)
Q Consensus 228 ~I~igh~~i 236 (302)
.|++||++.
T Consensus 160 ~i~i~~~g~ 168 (421)
T 1h4v_B 160 KVKLSSVGD 168 (421)
T ss_pred EEEEcCCCc
Confidence 999999764
No 11
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=6.6e-37 Score=297.08 Aligned_cols=167 Identities=26% Similarity=0.503 Sum_probs=154.2
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc---cccccEEEeeCCCCeEeeC
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE---IRDQLYCFEDRGNRRVALR 146 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~---~~~~~~~f~D~~G~~l~LR 146 (302)
||++++|+|++||+|.+++++++|++.++++|++|||++|.||+||+.++|..+.|+. ..++||+|.|++|+.++||
T Consensus 1 ~m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lr 80 (423)
T 1htt_A 1 AKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLR 80 (423)
T ss_dssp --CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEEC
T ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeC
Confidence 3578999999999999999999999999999999999999999999999998776763 4579999999999999999
Q ss_pred CCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC-CCC
Q 022115 147 PELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI-TAS 225 (302)
Q Consensus 147 pDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl-~~~ 225 (302)
||+|+++||+++++....++|+|+||+|+|||+++|+.||.|||+|+|+|+||.++..+|+|++.++.++|+++|+ +
T Consensus 81 pd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~~lgl~~-- 158 (423)
T 1htt_A 81 PEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISE-- 158 (423)
T ss_dssp SCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHTCGG--
T ss_pred CCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCCCchhhHHHHHHHHHHHHHCCCCC--
Confidence 9999999999998765557899999999999999999999999999999999999999999999999999999999 6
Q ss_pred ceEEEeCChHHHH
Q 022115 226 DVGFRISSRKVLQ 238 (302)
Q Consensus 226 ~~~I~igh~~il~ 238 (302)
++.|++||++..+
T Consensus 159 ~~~i~i~~~g~~~ 171 (423)
T 1htt_A 159 HVTLELNSIGSLE 171 (423)
T ss_dssp GCEEEEEECCCHH
T ss_pred CcEEEEcCCCChh
Confidence 7999999976443
No 12
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=100.00 E-value=1.4e-34 Score=266.91 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=160.6
Q ss_pred HHHHHHH--HHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC-CCe
Q 022115 92 WLFHNFQ--EVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS-LPL 168 (302)
Q Consensus 92 ~i~~~l~--~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~-~P~ 168 (302)
.+++.++ ++|++|||++|.||+||+.++|.. + +|.|++|+.++||||+|+|+| +.+....+ .|+
T Consensus 5 ~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~--------d--~f~d~~g~~l~LRpd~T~~~a---~~~~~~~~~~p~ 71 (275)
T 1usy_A 5 DFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG--------N--FFLDRKGNLFSIREDFTKTVL---NHRKRYSPDSQI 71 (275)
T ss_dssp CHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS--------S--CEEETTSCEEEECCCHHHHHH---HHHTTCTTCCCE
T ss_pred hHHHHHHHHHHHHHCCCEEecCccccchhhhcc--------c--ccCCCCCCEEEeCCcChHHHH---HHHhhcCCCCce
Confidence 3556666 999999999999999999999853 1 568999999999999999999 44444446 899
Q ss_pred EEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChHHHHHHHHhCCCCh
Q 022115 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDVGFRISSRKVLQEVLRCHSIPE 248 (302)
Q Consensus 169 K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~il~~il~~~gl~~ 248 (302)
|+||+|+|||+++++. |||+|+|+||||.++..+|+|+|.++.++|+.+|++ ++.|+|||++++++++.. +++
T Consensus 72 R~~y~g~vfR~e~~~~---Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~lgl~--~~~i~l~~~~~~~~~~~~--~~~ 144 (275)
T 1usy_A 72 KVWYADFVYRYSGSDL---VAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEG--PVIVEIGHTGVYEDLLKE--IPK 144 (275)
T ss_dssp EEECCEEEEEEETTEE---EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHHHCCS--CEEEEEEETTHHHHHHTT--SCG
T ss_pred EEEEeceEEecCCCCC---CeeeEeCEEEecCCCchhHHHHHHHHHHHHHHcCCC--CeEEEeCCHHHHHHHHHh--CCH
Confidence 9999999999998766 999999999999999999999999999999999997 799999999999999976 788
Q ss_pred hhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 249 ~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++..++++++++ +...+++.|+++|++++.++.+.+++.+.|
T Consensus 145 ~~~~~l~~~l~~~---~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g 187 (275)
T 1usy_A 145 DLHEKVLNLIDTK---NLAEIEFLSHMKKIDLSRVEKIIEDSIYRR 187 (275)
T ss_dssp GGHHHHHHHHHTT---CHHHHHHHHHHTCCCCTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcc---CHHHHHHHHHhcCCCHHHHHHHHHHHHhhC
Confidence 8899999999876 566788889999999999999999998876
No 13
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=7.6e-33 Score=268.12 Aligned_cols=162 Identities=28% Similarity=0.617 Sum_probs=139.2
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc---ccccccEEEeeCCCCeEeeCCCC
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE---EIRDQLYCFEDRGNRRVALRPEL 149 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~---~~~~~~~~f~D~~G~~l~LRpDl 149 (302)
+++|+|++||+|.+++++++|++.++++|+++||++|.||+|++.++|....|+ ...++||+|.|++|+.++||||+
T Consensus 2 ~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~ 81 (420)
T 1qe0_A 2 IKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEG 81 (420)
T ss_dssp CCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCC
Confidence 589999999999999999999999999999999999999999999999776444 24679999999999999999999
Q ss_pred hHHHHHHHHHhCCC--CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCCCce
Q 022115 150 TPSLARLVIQKGKS--VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITASDV 227 (302)
Q Consensus 150 T~~iaR~~a~~~~~--~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~~~~ 227 (302)
|++++|+++.+... .++|+|+||+|+|||+|+++.||.|||+|+|+|+||.++..+|+|++.++.++|+.||++ ++
T Consensus 82 t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~lgl~--~~ 159 (420)
T 1qe0_A 82 TAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLK--HL 159 (420)
T ss_dssp HHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHHTTCC--CE
T ss_pred hHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHHcCCC--ce
Confidence 99999999976543 468999999999999999999999999999999999999999999999999999999997 69
Q ss_pred EEEeCChHH
Q 022115 228 GFRISSRKV 236 (302)
Q Consensus 228 ~I~igh~~i 236 (302)
.+++||.+.
T Consensus 160 ~i~l~~~g~ 168 (420)
T 1qe0_A 160 KLVINSVGD 168 (420)
T ss_dssp EEEEEECCC
T ss_pred EEEEcccCc
Confidence 999999653
No 14
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=99.95 E-value=2.5e-28 Score=240.60 Aligned_cols=157 Identities=23% Similarity=0.316 Sum_probs=144.4
Q ss_pred CCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHH
Q 022115 75 PPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPS 152 (302)
Q Consensus 75 ~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~~ 152 (302)
.|+|++||+|.+++++++|++.++++|.++||++|.||+|++.++|... |+ ...++||+| |++|+.++||||.|++
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-g~~~~~~~emy~~-d~~~~~l~LRP~~t~~ 114 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVS-GHIEFYRNNMYLF-DIEGHEFAVKPMNCPY 114 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHT-CCCTTGGGGSEEE-EETTEEEEECSCSHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhc-cCccccccceEEE-ecCCcEEEEccccHHH
Confidence 7999999999999999999999999999999999999999999999764 43 246899999 9999999999999999
Q ss_pred HHHHHHHhCCC-C---CCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCChhHH--HHHHHHHHHHHHH-cC
Q 022115 153 LARLVIQKGKS-V---SLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKR-IG 221 (302)
Q Consensus 153 iaR~~a~~~~~-~---~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~~~aD--aEvi~l~~eil~~-lg 221 (302)
++|+++.+... . ++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+. ||
T Consensus 115 i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lG 194 (471)
T 3a32_A 115 HILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFK 194 (471)
T ss_dssp HHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999987322 2 6899999999999999888 89 999999999999999888888 9999999999999 99
Q ss_pred C----CCCceEEEeCChH
Q 022115 222 I----TASDVGFRISSRK 235 (302)
Q Consensus 222 l----~~~~~~I~igh~~ 235 (302)
+ + ++.+.+||+.
T Consensus 195 l~~~~~--~~~l~i~~~~ 210 (471)
T 3a32_A 195 LGVSSE--TFKVRLSMSD 210 (471)
T ss_dssp CCCSTT--TEEEEEECCC
T ss_pred CCcCCC--CeEEEEecCC
Confidence 9 5 6999999984
No 15
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=99.95 E-value=3.9e-28 Score=238.45 Aligned_cols=166 Identities=21% Similarity=0.242 Sum_probs=150.4
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCC-
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRP- 147 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRp- 147 (302)
+-.+.|+|++||+|.+++++++|++.+++.|.++||++|.||+|++.++|... |+ ...++||+|.|++|+.++|||
T Consensus 51 ~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~s-g~~d~~~~em~~~~d~~~~~~~LrPt 129 (458)
T 2i4l_A 51 MLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRES-GRYDAYGPEMLRIADRHKRELLYGPT 129 (458)
T ss_dssp CEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHH-THHHHSCTTSEEEECTTCCEEEECSC
T ss_pred CeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhc-CCccccccceEEEEeCCCCeEEECCC
Confidence 34567999999999999999999999999999999999999999999999764 65 357899999999999999999
Q ss_pred --CChHHHHHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHHHH---HHHHHHHH
Q 022115 148 --ELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELIS---SIITFFKR 219 (302)
Q Consensus 148 --DlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEvi~---l~~eil~~ 219 (302)
|+|++++|..+.+.+ ++|+|+||+|+|||+| +|+.| |.|||+|+|+|+||.+...+|+|++. ++.++|++
T Consensus 130 ~ee~t~~i~r~~~~s~~--~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~ 207 (458)
T 2i4l_A 130 NEEMITEIFRAYIKSYK--SLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFAR 207 (458)
T ss_dssp CHHHHHHHHHHHCCBGG--GCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhhcc--ccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988653 6899999999999999 88899 99999999999999888889998865 49999999
Q ss_pred cCCCCCceEEEeCChHHHHHHHH
Q 022115 220 IGITASDVGFRISSRKVLQEVLR 242 (302)
Q Consensus 220 lgl~~~~~~I~igh~~il~~il~ 242 (302)
||++ +.+.+||++++.+.++
T Consensus 208 lGl~---~~~~~~~~g~~gg~~s 227 (458)
T 2i4l_A 208 MGLK---AIPMRAETGPIGGDLS 227 (458)
T ss_dssp TTCC---EEEEECCCCSSCSSCE
T ss_pred cCCc---eEEEEccccccCCccc
Confidence 9995 9999999988776664
No 16
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=99.94 E-value=1e-26 Score=224.36 Aligned_cols=158 Identities=20% Similarity=0.296 Sum_probs=141.5
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCCh
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELT 150 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT 150 (302)
.+.++|++||+|.+++++++|++.+++.|.++||.+|.||+|++.++|.+ +|+. ..++||+ .|++|+.++|||+.|
T Consensus 16 ~~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~-~d~~~~~~~LrP~~~ 93 (401)
T 1evl_A 16 QEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNC 93 (401)
T ss_dssp CTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCE-EEETTEEEEECSCSH
T ss_pred cCCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEe-EecCCceEEEcCCCC
Confidence 35689999999999999999999999999999999999999999999987 5753 4678999 999999999999999
Q ss_pred HHHHHHHHHhCCC-CCCCeEEEEEccccccCC--CCCC--CccceeEeeEEEeccCChhHHH---HHHHHHHHHHHHcCC
Q 022115 151 PSLARLVIQKGKS-VSLPLKWFAVGQCWRYER--MTRG--RRREHYQWNMDIIGVPAVTAEA---ELISSIITFFKRIGI 222 (302)
Q Consensus 151 ~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~--~~~g--r~rEf~Q~g~EiiG~~~~~aDa---Evi~l~~eil~~lgl 222 (302)
++++|+++.+... .++|+|+||+|+|||+|. |+.| |.|||+|+|+|+||. ...+|+ |++.++.++++.||+
T Consensus 94 ~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~-~~~~~~e~~e~i~~~~~~~~~lgl 172 (401)
T 1evl_A 94 PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT-EEQIRDEVNGCIRLVYDMYSTFGF 172 (401)
T ss_dssp HHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC-GGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999876443 368999999999999997 4889 999999999999986 556777 589999999999999
Q ss_pred CCCceEEEeCChH
Q 022115 223 TASDVGFRISSRK 235 (302)
Q Consensus 223 ~~~~~~I~igh~~ 235 (302)
. ++.+.+|+..
T Consensus 173 ~--~~~~~~~~~~ 183 (401)
T 1evl_A 173 E--KIVVKLSTRP 183 (401)
T ss_dssp S--CCEEEEECCC
T ss_pred C--ceEEEEecCC
Confidence 6 6899999864
No 17
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=99.94 E-value=1.4e-26 Score=232.91 Aligned_cols=164 Identities=20% Similarity=0.249 Sum_probs=148.4
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
+.|+|++||+|.+++++++|++.+++.|+++||++|.||+|++.++|... |+ ...++||+|.|++|+.++|||+.|+
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-G~~~~~~~~m~~~~d~~~~~~~LrP~~~~ 112 (572)
T 2j3l_A 34 QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKES-GRYETYGPNLYRLKDRNDRDYILGPTHEE 112 (572)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHH-SHHHHSCTTSCEEECTTCCEEEECSCCHH
T ss_pred ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCccccchheEEEecCCCCeEEEccccHH
Confidence 46899999999999999999999999999999999999999999999754 65 3578999999999999999999999
Q ss_pred HHHHHHHHhCCC-CCCCeEEEEEccccccCCC-CCC--CccceeEeeEEEeccCChhHHHHH---HHHHHHHHHHcCCCC
Q 022115 152 SLARLVIQKGKS-VSLPLKWFAVGQCWRYERM-TRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSIITFFKRIGITA 224 (302)
Q Consensus 152 ~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~-~~g--r~rEf~Q~g~EiiG~~~~~aDaEv---i~l~~eil~~lgl~~ 224 (302)
+++|+++.+... .++|+|+||+|+|||+|++ +.| |.|||+|+|+|+||.+...+|+|+ +.++.++|+.||++
T Consensus 113 ~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~- 191 (572)
T 2j3l_A 113 TFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLE- 191 (572)
T ss_dssp HHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCc-
Confidence 999999987542 4689999999999999987 577 999999999999999888888886 55899999999995
Q ss_pred CceEEEeCChHHHHHHH
Q 022115 225 SDVGFRISSRKVLQEVL 241 (302)
Q Consensus 225 ~~~~I~igh~~il~~il 241 (302)
+.+.+||++.+.+.+
T Consensus 192 --~~~~~~~~g~~g~~~ 206 (572)
T 2j3l_A 192 --FRAIIGDGGAMGGKD 206 (572)
T ss_dssp --EEEEECCGGGGTCSS
T ss_pred --EEEEecccccCCCcc
Confidence 999999999988765
No 18
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.94 E-value=4e-27 Score=240.08 Aligned_cols=160 Identities=23% Similarity=0.335 Sum_probs=146.5
Q ss_pred cCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCC-CeEeeCCCC
Q 022115 73 VNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGN-RRVALRPEL 149 (302)
Q Consensus 73 ~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G-~~l~LRpDl 149 (302)
..+++|++||+|.+++++++|++.++++|.++||++|.||+|++.++|..+ |+. ..++||++.|.+| +.++|||+.
T Consensus 257 ~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~s-G~~d~~~~~mf~~~d~~~~~~~~LrP~~ 335 (645)
T 1nyr_A 257 QLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTS-GHWDHYQEDMFPPMQLDETESMVLRPMN 335 (645)
T ss_dssp TTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHH-THHHHCTTSSCCCEEETTTEEEEECSSS
T ss_pred ccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhC-CCccccccCcceeEecCCCeEEEeCCCC
Confidence 345899999999999999999999999999999999999999999999864 653 5789999999999 999999999
Q ss_pred hHHHHHHHHHhCCC-CCCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCChhHH--HHHHHHHHHHHHHcCC
Q 022115 150 TPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGI 222 (302)
Q Consensus 150 T~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~~~aD--aEvi~l~~eil~~lgl 222 (302)
|++++|+++.+... .++|+|+||+|+|||+|.++ .| |.|||+|+|+|+||.++..+| +|++.++.++|+.||+
T Consensus 336 ~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d~~~e~i~~~~~~l~~lGl 415 (645)
T 1nyr_A 336 CPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGF 415 (645)
T ss_dssp HHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999987543 47899999999999999876 66 999999999999999888888 9999999999999999
Q ss_pred CCCceEEEeCChH
Q 022115 223 TASDVGFRISSRK 235 (302)
Q Consensus 223 ~~~~~~I~igh~~ 235 (302)
+ ++.+++|++.
T Consensus 416 ~--~~~~~l~~~~ 426 (645)
T 1nyr_A 416 E--DYSFRLSYRD 426 (645)
T ss_dssp C--CEEEEEEECC
T ss_pred C--eEEEEEeCCC
Confidence 7 6999999874
No 19
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=99.94 E-value=5.7e-26 Score=223.22 Aligned_cols=162 Identities=27% Similarity=0.393 Sum_probs=145.6
Q ss_pred ccccc-CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCC----CC
Q 022115 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NR 141 (302)
Q Consensus 69 ~~~~~-~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~----G~ 141 (302)
.++.. .+++|++||+|.+++++++|++.++++|+++||++|.||+|++.++|.+.+|+ ...++||.|.|++ |+
T Consensus 19 ~li~~~~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~ 98 (459)
T 1nj8_A 19 EIYDVRYPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDV 98 (459)
T ss_dssp SSCBCCSTTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEE
T ss_pred CCccccCCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCC
Confidence 34666 68899999999999999999999999999999999999999999999876674 3578999999986 89
Q ss_pred eEeeCCCChHHHHHHHHHhCCC-CCCCeEEEEEccccccCCC-CCC--Ccccee-EeeEEEeccCChhHHHH---HHHHH
Q 022115 142 RVALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAE---LISSI 213 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~-~~g--r~rEf~-Q~g~EiiG~~~~~aDaE---vi~l~ 213 (302)
.++|||+.|++++|+++.+... .++|+|+||+|+|||+|.+ ++| |.|||+ |+|++++|.+...+|+| ++.++
T Consensus 99 ~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~ 178 (459)
T 1nj8_A 99 KLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIY 178 (459)
T ss_dssp EEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHH
Confidence 9999999999999999976443 4789999999999999988 889 999999 99999999988888888 89999
Q ss_pred HHHHHHcCCCCCceEEEeCC
Q 022115 214 ITFFKRIGITASDVGFRISS 233 (302)
Q Consensus 214 ~eil~~lgl~~~~~~I~igh 233 (302)
.++++.||++ +.+.+++
T Consensus 179 ~~~~~~LGl~---~~~~~~~ 195 (459)
T 1nj8_A 179 KKFFDTLGIP---YLISKRP 195 (459)
T ss_dssp HHHHHHHTCC---CEEEEEC
T ss_pred HHHHHHCCCc---eEEeecC
Confidence 9999999995 6666664
No 20
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=99.94 E-value=2.9e-26 Score=226.24 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=141.2
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCC----CCe
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NRR 142 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~----G~~ 142 (302)
.++.++.++|++||+|.+++++++|++.+++.|+++||++|.||+|++.++|.+.+|+ ...++||+|.|++ |+.
T Consensus 26 ~li~~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~ 105 (477)
T 1hc7_A 26 ELADYGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEP 105 (477)
T ss_dssp TSEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEE
T ss_pred CCeeecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCe
Confidence 3466778999999999999999999999999999999999999999999999875665 3568999999987 899
Q ss_pred EeeCCCChHHHHHHHHHhCCC-CCCCeEEEEEccccccCCCCCC--CccceeEeeEEEeccCChhHHHHHHHH---HHHH
Q 022115 143 VALRPELTPSLARLVIQKGKS-VSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAVTAEAELISS---IITF 216 (302)
Q Consensus 143 l~LRpDlT~~iaR~~a~~~~~-~~~P~K~~yig~VfR~e~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEvi~l---~~ei 216 (302)
++|||+.|++++++++.+... .++|+|+||+|+|||+|.+.+| |.|||+|+|+|++|.+...+|+|++.+ +.++
T Consensus 106 l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i 185 (477)
T 1hc7_A 106 LAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARL 185 (477)
T ss_dssp EEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987543 4789999999999999966669 999999999999999988999997665 8999
Q ss_pred H-HHcCCCCCceEEEeCCh
Q 022115 217 F-KRIGITASDVGFRISSR 234 (302)
Q Consensus 217 l-~~lgl~~~~~~I~igh~ 234 (302)
+ +.||++ +.+.+++.
T Consensus 186 ~~~~Lgl~---~~~~~~~~ 201 (477)
T 1hc7_A 186 AREYAAIP---VIEGLKTE 201 (477)
T ss_dssp HHHHHCCC---CEEEECCT
T ss_pred HHHhcCCe---EEEEeCCh
Confidence 9 899995 88888873
No 21
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.91 E-value=5.8e-24 Score=216.65 Aligned_cols=157 Identities=20% Similarity=0.301 Sum_probs=140.4
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChH
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
+.++|+.||+|.+++++++|++.+++.+.++||++|.||+|++.++|.. +|+. ..++||. .|.+|+.++|||+.|+
T Consensus 258 ~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~~my~-~d~~~~~~~LrP~~~~ 335 (642)
T 1qf6_A 258 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFT-TSSENREYCIKPMNCP 335 (642)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHH-HSHHHHHGGGCEE-EEETTEEEEECSSSHH
T ss_pred cCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhh-cCcccccccccee-eecCCceEEecCCCCH
Confidence 4699999999999999999999999999999999999999999999986 4763 4688999 8999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCeEEEEEccccccCCC--CCC--CccceeEeeEEEeccCChhHHHH---HHHHHHHHHHHcCCC
Q 022115 152 SLARLVIQKGK-SVSLPLKWFAVGQCWRYERM--TRG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFFKRIGIT 223 (302)
Q Consensus 152 ~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~--~~g--r~rEf~Q~g~EiiG~~~~~aDaE---vi~l~~eil~~lgl~ 223 (302)
+++++++.+.. ..++|+|+||+|+|||+|.+ +.| |.|||+|.|+++||.+ ..+|+| ++.++.++++.||+.
T Consensus 336 ~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~-~~~~~e~~~~i~~~~~i~~~lGl~ 414 (642)
T 1qf6_A 336 GHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE-EQIRDEVNGCIRLVYDMYSTFGFE 414 (642)
T ss_dssp HHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999987643 24689999999999999976 778 9999999999999964 356776 699999999999996
Q ss_pred CCceEEEeCChH
Q 022115 224 ASDVGFRISSRK 235 (302)
Q Consensus 224 ~~~~~I~igh~~ 235 (302)
++.+.++++.
T Consensus 415 --~~~v~l~~~~ 424 (642)
T 1qf6_A 415 --KIVVKLSTRP 424 (642)
T ss_dssp --CCEEEEECCC
T ss_pred --ceEEEEecCc
Confidence 6899999864
No 22
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=99.90 E-value=1.9e-23 Score=207.35 Aligned_cols=160 Identities=26% Similarity=0.392 Sum_probs=142.9
Q ss_pred cccc-CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCC----CCe
Q 022115 70 KIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRG----NRR 142 (302)
Q Consensus 70 ~~~~-~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~----G~~ 142 (302)
++.+ ..++|+.||+|.+++++++|++.+++.|++ ||++|.||+|++.++|.+++|+ ...++||+|.|.+ |+.
T Consensus 53 lid~~~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~ 131 (501)
T 1nj1_A 53 IIDQRYPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRK 131 (501)
T ss_dssp CEECCCSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEE
T ss_pred CccccCCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCe
Confidence 3555 678999999999999999999999999999 9999999999999999875565 2568999999876 789
Q ss_pred EeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccCCC-CCC--Ccccee-EeeEEEeccCChhHHHHH---HHHHH
Q 022115 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERM-TRG--RRREHY-QWNMDIIGVPAVTAEAEL---ISSII 214 (302)
Q Consensus 143 l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~-~~g--r~rEf~-Q~g~EiiG~~~~~aDaEv---i~l~~ 214 (302)
++|||+.|++++|+++.+.. ..++|+|+||+|+|||+|.+ ++| |.|||+ |.++++++.+...+|+|+ +.++.
T Consensus 132 l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~ 211 (501)
T 1nj1_A 132 LALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYK 211 (501)
T ss_dssp EEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 34789999999999999988 889 999999 999999999888888885 99999
Q ss_pred HHHHHcCCCCCceEEEeCC
Q 022115 215 TFFKRIGITASDVGFRISS 233 (302)
Q Consensus 215 eil~~lgl~~~~~~I~igh 233 (302)
++++.||++ +.+.++.
T Consensus 212 ~i~~~Lgl~---~~~~~~~ 227 (501)
T 1nj1_A 212 EFFNSLGIP---YLITRRP 227 (501)
T ss_dssp HHHHHHTCC---CEEEECC
T ss_pred HHHHHCCCe---EEEEeCC
Confidence 999999995 7777765
No 23
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=99.89 E-value=9.4e-23 Score=200.35 Aligned_cols=159 Identities=23% Similarity=0.306 Sum_probs=134.6
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHH-HHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--CCCeEeeCCC
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVS-RLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--GNRRVALRPE 148 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~--~G~~l~LRpD 148 (302)
+..+|+.||+|.++.+++.|++.+++.+ +++||++|.||+|++.++|.. +|+. ..++||.|.|. +|+.++|||+
T Consensus 51 ~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~-sGh~~~~~~emy~~~d~~~~~~~l~LrPt 129 (460)
T 3uh0_A 51 PLSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEK-SGHWENYADDMFKVETTDEEKEEYGLKPM 129 (460)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHH-HTCTTTSGGGSCEECC------CEEECSC
T ss_pred cCCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHh-cCCccccccceEEEecCCCCCceEEEccc
Confidence 4589999999999999999999999999 999999999999999999986 4653 56899999987 5899999999
Q ss_pred ChHHHHHHHHHhCC-CCCCCeEEEEEccccccCCCC--CC--CccceeEeeEEEeccCChhHHHH---HHHHHHHHH-HH
Q 022115 149 LTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMT--RG--RRREHYQWNMDIIGVPAVTAEAE---LISSIITFF-KR 219 (302)
Q Consensus 149 lT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~--~g--r~rEf~Q~g~EiiG~~~~~aDaE---vi~l~~eil-~~ 219 (302)
.|++++++++.... ..++|+|+||+|+|||+|.++ .| |.|||+|.|+++|+.+. .+|+| ++.++.+++ +.
T Consensus 130 ~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e-~~~~e~~~~i~~~~~~~~~~ 208 (460)
T 3uh0_A 130 NCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPS-QVKSEIFNSLKLIDIVYNKI 208 (460)
T ss_dssp SHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG-GHHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999887543 256899999999999999875 78 99999999999998754 45555 899999999 99
Q ss_pred cCCC------CCceEEEeCCh
Q 022115 220 IGIT------ASDVGFRISSR 234 (302)
Q Consensus 220 lgl~------~~~~~I~igh~ 234 (302)
||++ ..++.+.++.+
T Consensus 209 lGl~~~~~~~~~~~~~~l~t~ 229 (460)
T 3uh0_A 209 FPFVKGGSGAESNYFINFSTR 229 (460)
T ss_dssp SCCC-----CCSSCEEEEECC
T ss_pred cCCCCcccccccceEEEEccC
Confidence 9996 11477777664
No 24
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=99.86 E-value=1.3e-21 Score=194.32 Aligned_cols=155 Identities=23% Similarity=0.302 Sum_probs=136.2
Q ss_pred ccccc-CCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC----CC
Q 022115 69 QKIDV-NPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG----NR 141 (302)
Q Consensus 69 ~~~~~-~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~----G~ 141 (302)
.++++ ++++|+.+|+|.++++++.|++.+++.++++||++|.||+|++.++|...+|+. ..++||.+.|.+ |+
T Consensus 36 glid~r~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~ 115 (518)
T 3ial_A 36 ELVDRRYPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEE 115 (518)
T ss_dssp TCEETTSSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEE
T ss_pred CCcccCCCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCc
Confidence 34665 789999999999999999999999999999999999999999999997544542 568999999976 68
Q ss_pred eEeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHHHH---HHH
Q 022115 142 RVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAELIS---SII 214 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEvi~---l~~ 214 (302)
.++|||+.|++++++++.... ..++|+|+||+|+|||+| +++.| |.|||+|.++++||.+...++.|+.. ++.
T Consensus 116 ~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~ 195 (518)
T 3ial_A 116 RLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVID 195 (518)
T ss_dssp EEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHH
Confidence 999999999999999988654 357899999999999999 78889 99999999999999887778877654 568
Q ss_pred HHH-HHcCCC
Q 022115 215 TFF-KRIGIT 223 (302)
Q Consensus 215 eil-~~lgl~ 223 (302)
+++ +.||++
T Consensus 196 ~i~~~~LGlp 205 (518)
T 3ial_A 196 TIFSDELCFK 205 (518)
T ss_dssp HHHTTTTCCC
T ss_pred HHHHHhcCCc
Confidence 999 889985
No 25
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=186.16 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=135.6
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCC----e
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNR----R 142 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~----~ 142 (302)
.++++..++|+.+|+|.++.+++.|++.+++.+.++||++|.||+|++.++|.+.+|+. ..++||.+.|.+++ .
T Consensus 43 ~lid~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~ 122 (519)
T 4hvc_A 43 EMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEP 122 (519)
T ss_dssp TCEEECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEE
T ss_pred CCeEecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccc
Confidence 34666789999999999999999999999999999999999999999999998655653 56899999987754 6
Q ss_pred EeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhHHHHH---HHHHHH
Q 022115 143 VALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTAEAEL---ISSIIT 215 (302)
Q Consensus 143 l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~aDaEv---i~l~~e 215 (302)
++|||+.|++++++++.... ..++|+|+||+|+|||+| +++.| |.|||+|.++++++.....+++|+ +.++.+
T Consensus 123 l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~ 202 (519)
T 4hvc_A 123 IAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQ 202 (519)
T ss_dssp EEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988654 346899999999999999 77788 999999999999998888888775 567888
Q ss_pred HHHHc-CCC
Q 022115 216 FFKRI-GIT 223 (302)
Q Consensus 216 il~~l-gl~ 223 (302)
+++.| +++
T Consensus 203 i~~~ll~lp 211 (519)
T 4hvc_A 203 VYEELLAIP 211 (519)
T ss_dssp HHHTTSCCC
T ss_pred HHHHhcCCc
Confidence 99887 764
No 26
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.81 E-value=9.2e-20 Score=186.81 Aligned_cols=152 Identities=24% Similarity=0.369 Sum_probs=125.5
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccc--cc---------cccEEEeeC---
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEE--IR---------DQLYCFEDR--- 138 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~--~~---------~~~~~f~D~--- 138 (302)
..++|+.||+|.+++++++|++.+++.|. ..||.+|.||++++.++|..+ |+. .. +++|++ |+
T Consensus 88 ~g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~S-GH~~~f~d~m~~~~~~~e~yr~-D~l~e 165 (693)
T 2zt5_A 88 GGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTS-GHVDKFADFMVKDVKNGECFRA-DHLLK 165 (693)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHH-THHHHCEEEEEEBSSSCCEEEH-HHHHH
T ss_pred CCCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhc-CCcccccccceeeccCCceeec-cHhHH
Confidence 34699999999999999999999999998 569999999999999999753 542 11 356655 33
Q ss_pred ----------------------------------------------------------------------CCCeEeeCCC
Q 022115 139 ----------------------------------------------------------------------GNRRVALRPE 148 (302)
Q Consensus 139 ----------------------------------------------------------------------~G~~l~LRpD 148 (302)
+|+.+.||||
T Consensus 166 ~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~LRPE 245 (693)
T 2zt5_A 166 AHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYLRPE 245 (693)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEECSC
T ss_pred HHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceeeccc
Confidence 5789999999
Q ss_pred ChHHH----HHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChh--------HHHH-----
Q 022115 149 LTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVT--------AEAE----- 208 (302)
Q Consensus 149 lT~~i----aR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~--------aDaE----- 208 (302)
.|.++ +|.+..+.. ++|+++||+|++||+| +|+.| |.|||+|.++|+|+.++.. +|+|
T Consensus 246 taqg~f~~f~r~~~~~~~--~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~ 323 (693)
T 2zt5_A 246 TAQGIFLNFKRLLEFNQG--KLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYS 323 (693)
T ss_dssp SHHHHHTTHHHHHHHTTT--CSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEEC
T ss_pred cchHHHHHHHHHHHHhCc--CCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhh
Confidence 99998 998888643 6899999999999999 99999 9999999999999975442 2222
Q ss_pred -------------------------------HHHHHHHHHHHcCCCCCceEE
Q 022115 209 -------------------------------LISSIITFFKRIGITASDVGF 229 (302)
Q Consensus 209 -------------------------------vi~l~~eil~~lgl~~~~~~I 229 (302)
+|.++.+++..+|+....+.+
T Consensus 324 ~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~ 375 (693)
T 2zt5_A 324 AKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRF 375 (693)
T ss_dssp HHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred hhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEE
Confidence 788999999999997433444
No 27
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=99.80 E-value=2.2e-19 Score=178.24 Aligned_cols=147 Identities=19% Similarity=0.285 Sum_probs=123.2
Q ss_pred CCCCCCccCChHHHHHHHHHHHHHHHHHH--HcCCeeecCCcccchHHhhhhhccc--cccccEE---------------
Q 022115 74 NPPKGTRDFPPEDMRLRNWLFHNFQEVSR--LFGFEEVDFPVLESEALFIRKAGEE--IRDQLYC--------------- 134 (302)
Q Consensus 74 ~~p~G~~d~lp~~~~~~~~i~~~l~~vf~--~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~--------------- 134 (302)
..++|+.||+|.+++++++|++.+++.|. ++||.+|.||++++.++|... |+. ..+.||+
T Consensus 26 ~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~S-Gh~~~f~d~m~~~~~~~~~~r~d~l~~ 104 (505)
T 1ati_A 26 GGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYS-GHEATFADPMVDNRITKKRYRLDHLLK 104 (505)
T ss_dssp TCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHT-SHHHHCEEEEEEC--------------
T ss_pred CCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhc-CChhhcCccceeccccccccchhhhhh
Confidence 46799999999999999999999999999 999999999999999999764 432 1223333
Q ss_pred ----------------------E------e-----------------eCC-------------------------CCeEe
Q 022115 135 ----------------------F------E-----------------DRG-------------------------NRRVA 144 (302)
Q Consensus 135 ----------------------f------~-----------------D~~-------------------------G~~l~ 144 (302)
| . |.+ ++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~~~~ 184 (505)
T 1ati_A 105 EQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGLLAY 184 (505)
T ss_dssp ------------------------------------------------------CCCCEEEECBEEEECSSCCCGGGEEE
T ss_pred hhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCcccccccee
Confidence 2 1 111 46789
Q ss_pred eCCCChHHH----HHHHHHhCCCCCCCeEEEEEccccccC-CCCCC--CccceeEeeEEEeccCChhH--HHHHHHHHHH
Q 022115 145 LRPELTPSL----ARLVIQKGKSVSLPLKWFAVGQCWRYE-RMTRG--RRREHYQWNMDIIGVPAVTA--EAELISSIIT 215 (302)
Q Consensus 145 LRpDlT~~i----aR~~a~~~~~~~~P~K~~yig~VfR~e-~~~~g--r~rEf~Q~g~EiiG~~~~~a--DaEvi~l~~e 215 (302)
|||+.|+++ +|.+..+.+ ++|+|+||+|+|||+| +|+.| |.|||+|.++++++.++... +++++.++.+
T Consensus 185 LRPE~t~~i~~~~~~~~~sy~r--~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~ 262 (505)
T 1ati_A 185 LRPETAQGIFVNFKNVLDATSR--KLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLK 262 (505)
T ss_dssp ECSSSHHHHHHTHHHHHHHHTC--CSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHH
T ss_pred ecccchhHHHHHHHHHHHhcCC--CCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999998 787777633 5899999999999999 88889 99999999999999876654 7899999999
Q ss_pred HHHHcCCC
Q 022115 216 FFKRIGIT 223 (302)
Q Consensus 216 il~~lgl~ 223 (302)
+++.||++
T Consensus 263 i~~~LGl~ 270 (505)
T 1ati_A 263 WWQEMGLS 270 (505)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99999997
No 28
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.80 E-value=1.8e-19 Score=175.41 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=125.5
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcc--ccccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGE--EIRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~--~~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-+|+.||+|.++++++.|.+.+++.+.++||.+|.||.|++.++|... |+ ...++||++. |+.++|||+.|+++
T Consensus 161 g~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~---~~~l~LrPt~e~~i 236 (425)
T 2dq3_A 161 GSRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGT-GQLPKFEEDLYKCE---RDNLYLIPTAEVPL 236 (425)
T ss_dssp CSSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH-SCTTTTGGGSCBCT---TTCCEECSSTHHHH
T ss_pred CCCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCCCcChhhheEec---CCeEEEcCCCcHHH
Confidence 399999999999999999999999999999999999999999999764 64 3567899884 56899999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEEccccccCCCCC-----C--CccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHHcCCC
Q 022115 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMTR-----G--RRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 154 aR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~-----g--r~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~lgl~ 223 (302)
+++++.... ..++|+|+||+|+|||+|.++. | |.|||+|.++++|+.+.. ....|++.++.++|+.||++
T Consensus 237 ~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~ 316 (425)
T 2dq3_A 237 TNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP 316 (425)
T ss_dssp HGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 999987543 3468999999999999997543 3 889999999999998653 23479999999999999996
No 29
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.75 E-value=6.8e-18 Score=164.06 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=124.8
Q ss_pred CCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHHH
Q 022115 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSLA 154 (302)
Q Consensus 77 ~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~ia 154 (302)
.|+.+|+|.++++++.|.+.+++.+.++||.+|.||.|++.++|... |+. ..++||++.| +.++|+|+.|++++
T Consensus 156 ~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d---~~l~L~Pt~e~~~~ 231 (421)
T 1ses_A 156 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GHFPAYRDQVWAIAE---TDLYLTGTAEVVLN 231 (421)
T ss_dssp SSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TCTTTTGGGSCBBTT---SSEEECSSTHHHHH
T ss_pred CCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CCCCcCchhcEEEcC---CeEEEeecCcHHHH
Confidence 79999999999999999999999999999999999999999999764 653 5688999864 67999999999999
Q ss_pred HHHHHhCC-CCCCCeEEEEEccccccC-----CCCCC--CccceeEeeEEEeccCC-hhHH---HHHHHHHHHHHHHcCC
Q 022115 155 RLVIQKGK-SVSLPLKWFAVGQCWRYE-----RMTRG--RRREHYQWNMDIIGVPA-VTAE---AELISSIITFFKRIGI 222 (302)
Q Consensus 155 R~~a~~~~-~~~~P~K~~yig~VfR~e-----~~~~g--r~rEf~Q~g~EiiG~~~-~~aD---aEvi~l~~eil~~lgl 222 (302)
+++..... ..++|+|+|++|+|||+| +++.| |.|||+|.++.+|..++ ..++ .|++.++.++|+.||+
T Consensus 232 ~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL 311 (421)
T 1ses_A 232 ALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLEL 311 (421)
T ss_dssp HTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99876532 346899999999999999 67788 99999999888888761 2344 3899999999999999
Q ss_pred C
Q 022115 223 T 223 (302)
Q Consensus 223 ~ 223 (302)
+
T Consensus 312 ~ 312 (421)
T 1ses_A 312 P 312 (421)
T ss_dssp C
T ss_pred c
Confidence 6
No 30
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.74 E-value=1.1e-17 Score=154.95 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCCe
Q 022115 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (302)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~ 168 (302)
..+.+++.++++|..+||.||.||.|++.+.+.. .|.....++|.+.++.++.++|||++++..++.+..+....+.|+
T Consensus 72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~-~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Pl 150 (288)
T 3dsq_A 72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAK-MTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPI 150 (288)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHT-TSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhh-cCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCE
Confidence 4578999999999999999999999999998765 343222256665555446689999999999877666544457899
Q ss_pred EEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 169 KWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 169 K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
|+|++|+|||++.++.+|.+||+|++++++|.++...++|++.++.++++.||++
T Consensus 151 rlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~LGl~ 205 (288)
T 3dsq_A 151 RIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIR 205 (288)
T ss_dssp EEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHHTCC
T ss_pred EEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHcCCC
Confidence 9999999999998888899999999999999877778999999999999999995
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.72 E-value=2.3e-17 Score=161.72 Aligned_cols=152 Identities=19% Similarity=0.148 Sum_probs=128.4
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-.|+.+|+|.++++++.|.+.+++.+.++||.+|.||.|++.++|... |+. ..++||++.| +.++|||+.++++
T Consensus 182 g~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~~~f~~emy~~~d---~~l~LrPt~e~~~ 257 (455)
T 2dq0_A 182 GSRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS-TSFEDFEDVIYKVED---EDLYLIPTAEHPL 257 (455)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTT-SCTTHHHHTCCBBTT---SSCEECSSTHHHH
T ss_pred CCCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhc-CCCCCChHhhCeecC---CcEEEcCcCcHHH
Confidence 479999999999999999999999999999999999999999999865 653 4678999854 6799999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEEccccccCCCCCC-------CccceeEeeEEEeccCCh--hHHHHHHHHHHHHHHHcCCC
Q 022115 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRG-------RRREHYQWNMDIIGVPAV--TAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 154 aR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~g-------r~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~~lgl~ 223 (302)
+++++.... ..++|+|+|++|+|||+|.++.| |.|||+|.++.++..+.. ..-.|++.++.++|+.||++
T Consensus 258 ~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~ 337 (455)
T 2dq0_A 258 AGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP 337 (455)
T ss_dssp HHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999887543 34689999999999999987655 889999998888886532 12348899999999999996
Q ss_pred CCceEEEeCCh
Q 022115 224 ASDVGFRISSR 234 (302)
Q Consensus 224 ~~~~~I~igh~ 234 (302)
+.+....+
T Consensus 338 ---yrv~~~~~ 345 (455)
T 2dq0_A 338 ---YRVVNICT 345 (455)
T ss_dssp ---EEEEECCG
T ss_pred ---eEEEECCC
Confidence 66665443
No 32
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.66 E-value=1.8e-16 Score=157.32 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=125.8
Q ss_pred cccCCCCCCccCChHHHHHHHHHHHHHHH-HHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEe-----e-----
Q 022115 71 IDVNPPKGTRDFPPEDMRLRNWLFHNFQE-VSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFE-----D----- 137 (302)
Q Consensus 71 ~~~~~p~G~~d~lp~~~~~~~~i~~~l~~-vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~-----D----- 137 (302)
+..-..+|+.||+|..+++++.|.+.+++ ++.++||.+|.+|.|++.++|... |+. ..++||++. |
T Consensus 215 i~~~~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~S-Gh~~~F~demy~v~~~~~Rd~~~~e 293 (522)
T 2cja_A 215 LKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKS-GHAKGVYPEIYYVCPPQTRDPDYWE 293 (522)
T ss_dssp EEECSSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHH-TGGGTCGGGCCEEECBSCCCHHHHH
T ss_pred eeeeCCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhc-CCcCccccceeeeecCCccchhhhh
Confidence 44448899999999999999999999996 589999999999999999999874 653 467899995 2
Q ss_pred --------------------CCCCeEeeCCCChHHHHHHHHHhC-CCCCCCeEEEE-EccccccCCCC--C--CCcccee
Q 022115 138 --------------------RGNRRVALRPELTPSLARLVIQKG-KSVSLPLKWFA-VGQCWRYERMT--R--GRRREHY 191 (302)
Q Consensus 138 --------------------~~G~~l~LRpDlT~~iaR~~a~~~-~~~~~P~K~~y-ig~VfR~e~~~--~--gr~rEf~ 191 (302)
.+++.++|||+.++++++++.... ...++|+|+|+ +|+|||+| ++ . .|.|||+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~ 372 (522)
T 2cja_A 294 EVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFH 372 (522)
T ss_dssp HHHHHHHHHSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEE
T ss_pred hhhhhhhccccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEE
Confidence 147899999999999999887542 23458999999 99999999 66 4 4899999
Q ss_pred EeeEEEeccCChhH-H-HHHH-HHHHHHHHHcCCC
Q 022115 192 QWNMDIIGVPAVTA-E-AELI-SSIITFFKRIGIT 223 (302)
Q Consensus 192 Q~g~EiiG~~~~~a-D-aEvi-~l~~eil~~lgl~ 223 (302)
|.++++|+.++... + .+++ ..+..+++.|||+
T Consensus 373 q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp 407 (522)
T 2cja_A 373 RIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE 407 (522)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred EeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999654432 2 4568 7888888999996
No 33
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.63 E-value=4.3e-15 Score=137.51 Aligned_cols=128 Identities=25% Similarity=0.379 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhh---ccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKA---GEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~---g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
+.++.+.++++|..+||.||.||+|+..+.+.... ++.+.+.+|.| | +..+|||++++++.+.++.+......
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~-~---~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV-D---KNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE-T---TTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee-C---CCeeEcccChHHHHHHHHHhhccCCC
Confidence 68899999999999999999999999988764321 12234557766 3 57999999999999999887554567
Q ss_pred CeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 167 PLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 167 P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
|.|+|++|+|||++..+.++.+||+|++++++|.+. .+.|+..++.++|+.+|+.
T Consensus 155 p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~~--~f~elkg~le~ll~~lGl~ 209 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSGC--TRENLESIITDFLNHLGID 209 (290)
T ss_dssp SEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTTC--CHHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCCh--HHHHHHHHHHHHHHHcCCC
Confidence 999999999999997777889999999999999764 4678999999999999984
No 34
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.56 E-value=4.3e-14 Score=139.84 Aligned_cols=151 Identities=16% Similarity=0.189 Sum_probs=123.6
Q ss_pred CCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeC--------CCCeEeeC
Q 022115 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDR--------GNRRVALR 146 (302)
Q Consensus 77 ~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~--------~G~~l~LR 146 (302)
.|+..|.|..+++.+.+.+.+++.+.++||.+|.||.|.+.++|.. +|+. ..++||++.|. .++.++|+
T Consensus 191 sgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~-sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~ 269 (522)
T 3vbb_A 191 SRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQE-VAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLI 269 (522)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HSCCC-CCSCCCEEC------------CCEEEC
T ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhh-cCCcccCcccceEeecCCccccccccCcceeEc
Confidence 6999999999999999999999999999999999999999999975 4643 56889999875 36789999
Q ss_pred CCChHHHHHHHHHhC-CCCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCCh---h-HHHHHHHHHH
Q 022115 147 PELTPSLARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV---T-AEAELISSII 214 (302)
Q Consensus 147 pDlT~~iaR~~a~~~-~~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~---~-aDaEvi~l~~ 214 (302)
|...++++.++.... ...++|+|+|++++|||+|... .| |.+||+|.++.+|..+.. . .-.+++.++.
T Consensus 270 PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e 349 (522)
T 3vbb_A 270 ATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAE 349 (522)
T ss_dssp SSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHH
Confidence 999999998876542 2457899999999999999653 33 678999999999987543 2 2357899999
Q ss_pred HHHHHcCCCCCceEEEe
Q 022115 215 TFFKRIGITASDVGFRI 231 (302)
Q Consensus 215 eil~~lgl~~~~~~I~i 231 (302)
++|+.|||+ |.+..
T Consensus 350 ~il~~LGLp---yrvv~ 363 (522)
T 3vbb_A 350 EFYQSLGIP---YHIVN 363 (522)
T ss_dssp HHHHHTTCC---EEEEE
T ss_pred HHHHHcCCc---eEEEE
Confidence 999999996 55443
No 35
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.54 E-value=5.7e-14 Score=138.85 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=125.9
Q ss_pred CCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--ccc-ccEEEeeCCCCeEeeCCCChHHH
Q 022115 77 KGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRD-QLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 77 ~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~-~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
.|+..|.|..+++.+.|.+.+.+.+.++||.+|.||.|.+.++|... |.. ..+ +||++.|.+++.++|+|..++++
T Consensus 209 ~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~ 287 (501)
T 1wle_A 209 HRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGC-GMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGL 287 (501)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH-TCCSSSSSCSSCBBCTTTSSSCEECSSHHHHH
T ss_pred CceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhh-cCCCccCccccEEEecCCCCeEEECCcCcHHH
Confidence 68888899999999999999999999999999999999999998754 543 345 89999887778999999999999
Q ss_pred HHHHHHhCC-CCCCCeEEEEEccccccCCC----CCC--CccceeEeeEEEeccCC-hh---HHHHHHHHHHHHHHHcCC
Q 022115 154 ARLVIQKGK-SVSLPLKWFAVGQCWRYERM----TRG--RRREHYQWNMDIIGVPA-VT---AEAELISSIITFFKRIGI 222 (302)
Q Consensus 154 aR~~a~~~~-~~~~P~K~~yig~VfR~e~~----~~g--r~rEf~Q~g~EiiG~~~-~~---aDaEvi~l~~eil~~lgl 222 (302)
+.++..... ..++|+|+|++|+|||+|.. ..| |.+||.|.++.+|..+. .. .-.+++..+.++|+.|||
T Consensus 288 ~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgL 367 (501)
T 1wle_A 288 AGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGL 367 (501)
T ss_dssp HHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 998876532 34689999999999999954 345 67899999999999874 22 334689999999999999
Q ss_pred CCCceEE
Q 022115 223 TASDVGF 229 (302)
Q Consensus 223 ~~~~~~I 229 (302)
+ |.+
T Consensus 368 p---yrv 371 (501)
T 1wle_A 368 H---FRV 371 (501)
T ss_dssp C---EEE
T ss_pred c---EEE
Confidence 6 665
No 36
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.48 E-value=4.6e-13 Score=131.59 Aligned_cols=151 Identities=14% Similarity=0.137 Sum_probs=124.6
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-.|+..|.|..+++.+.+.+.+++.+.++||.+|.||.+.+.++|... |+. ..++||++.|. ++.++|+|...+++
T Consensus 197 Gsgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~~~~f~e~mf~v~~~-~~~~~L~PTaE~~l 274 (484)
T 3lss_A 197 GGRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEV-AQLSQFDEELYQVSGD-GDKKYLIATSEMPI 274 (484)
T ss_dssp CTTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH-SCHHHHHHTCCEEESS-SSCEEECSSTHHHH
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhc-CCcccccccceEeecC-CcceEEeccCcHHH
Confidence 467888999999999999999999999999999999999999999753 643 45789999764 77899999999999
Q ss_pred HHHHHHhC-CCCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCCh---hH-HHHHHHHHHHHHHHcC
Q 022115 154 ARLVIQKG-KSVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAV---TA-EAELISSIITFFKRIG 221 (302)
Q Consensus 154 aR~~a~~~-~~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~---~a-DaEvi~l~~eil~~lg 221 (302)
+-++.... ...++|+|+|.+++|||+|... .| |.|||+|.++.+|..+.. .. -.+++..+.++|+.||
T Consensus 275 ~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LG 354 (484)
T 3lss_A 275 AAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLG 354 (484)
T ss_dssp HHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcC
Confidence 88766532 3467899999999999999532 34 789999999999987543 22 2467899999999999
Q ss_pred CCCCceEEEe
Q 022115 222 ITASDVGFRI 231 (302)
Q Consensus 222 l~~~~~~I~i 231 (302)
++ |.+..
T Consensus 355 Lp---yrvv~ 361 (484)
T 3lss_A 355 LP---YRVVN 361 (484)
T ss_dssp CC---EEEEE
T ss_pred Cc---EEEEE
Confidence 96 65543
No 37
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.47 E-value=4.7e-13 Score=131.45 Aligned_cols=151 Identities=13% Similarity=0.179 Sum_probs=124.4
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-.|+..|.|..+++.+.+.+.+++.+.++||.+|.||.|.+.+++... |+. ..++||++.|. ++.++|.|....|+
T Consensus 174 Gsg~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s-G~l~~f~eemf~v~~~-~~~~~LipTaE~pl 251 (485)
T 3qne_A 174 GHRGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKT-AQLSQFDEELYKVIDG-EDEKYLIATSEQPI 251 (485)
T ss_dssp CTTCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH-SCHHHHTTTCCEEEET-TEEEEECSSTHHHH
T ss_pred cceeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccccceEEEeCC-CCeEEEeccccHHH
Confidence 458999999999999999999999999999999999999999999754 542 45789999875 67899999999999
Q ss_pred HHHHHHhC-C--CCCCCeEEEEEccccccCCCC-----CC--CccceeEeeEEEeccCChh--HHHHHHHHHHHHHHHcC
Q 022115 154 ARLVIQKG-K--SVSLPLKWFAVGQCWRYERMT-----RG--RRREHYQWNMDIIGVPAVT--AEAELISSIITFFKRIG 221 (302)
Q Consensus 154 aR~~a~~~-~--~~~~P~K~~yig~VfR~e~~~-----~g--r~rEf~Q~g~EiiG~~~~~--aDaEvi~l~~eil~~lg 221 (302)
+.++.... . ..++|+|+|++++|||+|... .| |.+||+|.++.+|..+... .-.+++.++.++|+.||
T Consensus 252 ~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~Lg 331 (485)
T 3qne_A 252 SAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLG 331 (485)
T ss_dssp HHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 98876543 2 346899999999999999643 34 7799999999999765331 22467899999999999
Q ss_pred CCCCceEEEe
Q 022115 222 ITASDVGFRI 231 (302)
Q Consensus 222 l~~~~~~I~i 231 (302)
|+ |.+..
T Consensus 332 Lp---yrvv~ 338 (485)
T 3qne_A 332 LP---YRVVG 338 (485)
T ss_dssp CC---EEEEE
T ss_pred Cc---EEEEE
Confidence 96 55444
No 38
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.45 E-value=4.7e-13 Score=124.21 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccch-HHhhhh-hccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHh
Q 022115 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESE-ALFIRK-AGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQK 160 (302)
Q Consensus 83 lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~-d~~~~~-~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~ 160 (302)
.....+++.+|.+.++++|.++||.+|+||+++.. +++... .|+. .++|.+. -.|+.+.||..-....-+.++.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~--a~~f~~~-~~~~~~~L~~Spe~~~~~l~~~- 86 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG--MEPAEVE-IYGVKMRLTHSMILHKQLAIAM- 86 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC--CCCCEEE-ETTEEEEECSCSHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc--ceeEEEE-cCCCCEEeccChHHHHHHHhhc-
Confidence 56778999999999999999999999999999998 777655 4443 5677752 3466788874333333333321
Q ss_pred CCCCCCCeEEEEEccccccCCCCC--CCcc-ceeEeeEEEeccCChhHHHHHHHHHHHHHHHcC
Q 022115 161 GKSVSLPLKWFAVGQCWRYERMTR--GRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRIG 221 (302)
Q Consensus 161 ~~~~~~P~K~~yig~VfR~e~~~~--gr~r-Ef~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lg 221 (302)
.+.|+||+|+|||+|+|+. +|.+ ||+|+++|++|.+ +.|++.++.++++.+.
T Consensus 87 -----g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~----~~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 87 -----GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK----MEDIMRLIERLVYGLF 141 (294)
T ss_dssp -----TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHHH
T ss_pred -----CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC----HHHHHHHHHHHHHHHH
Confidence 2779999999999998663 6776 9999999999985 5677777777776664
No 39
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.41 E-value=2e-12 Score=128.93 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=123.2
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCCCCeEeeCCCChHHH
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
-.|+..|.|..+++.+.+.+.+++.+.++||.+|.||.+.+.+++.. +|+. ..++||++.| +.++|+|...+++
T Consensus 264 G~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~-sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~ 339 (536)
T 3err_A 264 GSRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLG-TGHFPAYRDQVWAIAE---TDLYLTGTAEVVL 339 (536)
T ss_dssp CSSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHH-HTCTTTTGGGCCEETT---TTEEECSSTHHHH
T ss_pred CCceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHh-cCCcccChhhceEecC---CCEEEccCCcHHH
Confidence 46888999999999999999999999999999999999999999975 4653 4578999865 5799999999999
Q ss_pred HHHHHHhC-CCCCCCeEEEEEccccccCCC-----CCC--CccceeEeeEEEeccCC-hhHH---HHHHHHHHHHHHHcC
Q 022115 154 ARLVIQKG-KSVSLPLKWFAVGQCWRYERM-----TRG--RRREHYQWNMDIIGVPA-VTAE---AELISSIITFFKRIG 221 (302)
Q Consensus 154 aR~~a~~~-~~~~~P~K~~yig~VfR~e~~-----~~g--r~rEf~Q~g~EiiG~~~-~~aD---aEvi~l~~eil~~lg 221 (302)
+-++.... ...++|+|+|.+|+|||+|.. ..| |.|||+|.++.+|..+. ..++ .+++..+.++|+.||
T Consensus 340 ~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~Lg 419 (536)
T 3err_A 340 NALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLE 419 (536)
T ss_dssp HHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcC
Confidence 88766532 235689999999999999963 344 78999999999999876 2222 367889999999999
Q ss_pred CCCCceEEEe
Q 022115 222 ITASDVGFRI 231 (302)
Q Consensus 222 l~~~~~~I~i 231 (302)
++ |.+..
T Consensus 420 Lp---yrvv~ 426 (536)
T 3err_A 420 LP---YRLVE 426 (536)
T ss_dssp CC---EEEEE
T ss_pred Cc---EEEEE
Confidence 96 55543
No 40
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=99.31 E-value=9.3e-12 Score=121.31 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHhCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 162 (302)
...+.+..+.+.++++|..+||.+|+||+++... ++ -..++|.+ |..|+.+.|| |+++... ++.
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~------~e-~~~~~f~~-~~~~~~~~Lr~Spel~~~~---~~~--- 198 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTGA------VE-GGATLFKL-KYFDKYAYLSQSAQLYLEA---AIF--- 198 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC------SS-CGGGCCEE-EETTEEEEECSCSHHHHHH---HHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeec------CC-CCceeEEE-eecCCcEEeccChHHHHHH---Hhc---
Confidence 4557889999999999999999999999999652 11 13567777 5678899999 7776443 222
Q ss_pred CCCCCeEEEEEccccccCCCCCCCcc-ceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~r-Ef~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
.+.|+|++|+|||+|+++.+|.+ ||+|+++|+.|.+ +.|++.++.++++.+
T Consensus 199 ---g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 250 (434)
T 1x54_A 199 ---GLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD----LWDIMKVEEELVSYM 250 (434)
T ss_dssp ---HHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ---CccceEEEecceecCCCCCcccccEEEEeeEEEcCCC----HHHHHHHHHHHHHHH
Confidence 16799999999999988887766 9999999999985 567777777776655
No 41
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=99.26 E-value=2.3e-11 Score=118.30 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHhCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 162 (302)
.-.+++.++.+.+++.|..+||.+|+||+++... ++ -..++|.+ +..|+.+.|| |+++ .-+ ++..
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~------~e-~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g-- 198 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASA------TE-GGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV-- 198 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------SS-TTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH--
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeC------CC-CCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC--
Confidence 3457889999999999999999999999999652 11 23567777 5678899999 7765 344 3432
Q ss_pred CCCCCeEEEEEccccccCCCCCCCcc-ceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~r-Ef~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
+-|+|++|+|||+|+++.+|.+ ||+|+++|+.+.+ ..|++.++.+.++.+
T Consensus 199 ----~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~----~~dlm~~~e~ll~~l 249 (429)
T 1wyd_A 199 ----VERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD----YNDVMQLLEKILHNI 249 (429)
T ss_dssp ----HSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred ----cCceEEEcccccccCCccccccceeeEeeeeecCCC----HHHHHHHHHHHHHHH
Confidence 5699999999999988877766 9999999999985 345555555554443
No 42
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=99.23 E-value=1.4e-11 Score=119.70 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHhCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 162 (302)
.-.+++.++.+.++++|..+||.||+||+++.... +. ..++|.+ |..|+.++|| |+++. +.++ .+
T Consensus 123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~-----e~--~~~~f~~-~~~g~~~~L~~Spel~~---~~l~-~g- 189 (422)
T 1n9w_A 123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGA-----EG--GSGLFGV-DYFEKRAYLAQSPQLYK---QIMV-GV- 189 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCC------------------------------------CHHHH---HHHH-HH-
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCC-----CC--CceeEEE-eeCCCcEEeeeCHHHHH---HHHh-hC-
Confidence 45678999999999999999999999999996521 11 2456766 5667889999 77764 3344 22
Q ss_pred CCCCCeEEEEEccccccCCCCCCCcc-ceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~r-Ef~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
.-|+|++|+|||+|+++.+|.+ ||+|+++|+.|.++ ..|++.++.+++..+
T Consensus 190 ----~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d---~~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 190 ----FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIAD---EEDLMRLEEALLAEM 241 (422)
T ss_dssp ----HSEEEEEEEC-------------CCEEEEEEEESCSS---HHHHHHHHHHHHHHH
T ss_pred ----CCceeEEeCceECCCCCCCcccceeEEeeeeeeCCCC---HHHHHHHHHHHHHHH
Confidence 3599999999999988887776 99999999999844 345666555555443
No 43
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=99.11 E-value=4.2e-10 Score=111.12 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHhCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGKS 163 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pDlT~~iaR~~a~~~~~ 163 (302)
-.++|.+|...+++.|..+||.||+||+++..+. ++ ..++|.+. ..|+.+.|| |++-. -++++.
T Consensus 177 ~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~-----~~--ga~~f~~~-~~~~~~~L~~Spql~~--k~l~~~---- 242 (487)
T 1eov_A 177 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS-----EG--GSSVFEVT-YFKGKAYLAQSPQFNK--QQLIVA---- 242 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS-----SS--SSCCCEEE-ETTEEEEECSCTHHHH--HHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecC-----CC--Ccccceec-cCCccEEcccChHHHH--HHHHhc----
Confidence 4578899999999999999999999999997541 21 24578774 478899999 77733 233332
Q ss_pred CCCCeEEEEEccccccCCCCCCCcc-ceeEeeEEE-eccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRR-EHYQWNMDI-IGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~r-Ef~Q~g~Ei-iG~~ 201 (302)
.+-|+||+|+|||+|+++.+|.+ ||+|+++|+ +|.+
T Consensus 243 --g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~ 280 (487)
T 1eov_A 243 --DFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH 280 (487)
T ss_dssp --TCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC
T ss_pred --CCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcC
Confidence 15699999999999998877876 999999998 7754
No 44
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=99.03 E-value=9.5e-11 Score=114.81 Aligned_cols=150 Identities=17% Similarity=0.164 Sum_probs=98.7
Q ss_pred CCc-cCChHHHHHHHHHHHHHHHHH--HHcCCeeecCCcccchHHhhhh-hcc-----cccc----------ccEEEe-e
Q 022115 78 GTR-DFPPEDMRLRNWLFHNFQEVS--RLFGFEEVDFPVLESEALFIRK-AGE-----EIRD----------QLYCFE-D 137 (302)
Q Consensus 78 G~~-d~lp~~~~~~~~i~~~l~~vf--~~~Gy~eI~tP~le~~d~~~~~-~g~-----~~~~----------~~~~f~-D 137 (302)
|+. ||+|.++.+++.|++.+.+.+ .+.||.+|+||++.+.+++... .|+ .+.+ +|+.++ +
T Consensus 52 G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~ 131 (454)
T 1g5h_A 52 GCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLEN 131 (454)
T ss_dssp CCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHH
T ss_pred cceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHh
Confidence 767 999999999999999888874 6899999999999988766421 122 0111 122221 1
Q ss_pred CCCCeEeeCCCChHHHHHHHHHhC--CCCCCCeEEEEEccccc---cC-CCCCC--CccceeEeeEEEeccCChh-HH-H
Q 022115 138 RGNRRVALRPELTPSLARLVIQKG--KSVSLPLKWFAVGQCWR---YE-RMTRG--RRREHYQWNMDIIGVPAVT-AE-A 207 (302)
Q Consensus 138 ~~G~~l~LRpDlT~~iaR~~a~~~--~~~~~P~K~~yig~VfR---~e-~~~~g--r~rEf~Q~g~EiiG~~~~~-aD-a 207 (302)
..++.++|||+....+........ ...++|++++++|+||| +| .+..| |.|||+|.++++|-.+... .+ .
T Consensus 132 ~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~ 211 (454)
T 1g5h_A 132 LLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLD 211 (454)
T ss_dssp HHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHH
T ss_pred hcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHH
Confidence 124578999966554444333321 11368999999999999 47 44444 7899999999999643221 11 2
Q ss_pred HHHHHHHHHHHHcCCCCCce
Q 022115 208 ELISSIITFFKRIGITASDV 227 (302)
Q Consensus 208 Evi~l~~eil~~lgl~~~~~ 227 (302)
.++..+.+++..||++...+
T Consensus 212 ~~~~~~~~~~~~lgi~~~~~ 231 (454)
T 1g5h_A 212 FWLRHRLLWWRKFAMSPSNF 231 (454)
T ss_dssp HHHHHHHHHHHTTCSSGGGE
T ss_pred HHHHHHHHHHHHcCCCceeE
Confidence 35778888999999974334
No 45
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.01 E-value=3e-09 Score=100.10 Aligned_cols=150 Identities=16% Similarity=0.177 Sum_probs=119.6
Q ss_pred CCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccc--cccccEEEeeCC--------------
Q 022115 76 PKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEE--IRDQLYCFEDRG-------------- 139 (302)
Q Consensus 76 p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~--~~~~~~~f~D~~-------------- 139 (302)
..|+.-+-+...++.+.+.+.+++ ...+||++|.+|.+...+++.. +|.. ..++||....-.
T Consensus 53 ~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~-SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~ 130 (346)
T 3mf2_A 53 SDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEK-SGYLKSFPNLLGCVCGLHGTEREINAAVSRFD 130 (346)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHH-TTHHHHCGGGCEEEEEECSCHHHHHHHHHHHH
T ss_pred CCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHh-cCCcccChhhcceeecccccchhhhhhhhhhc
Confidence 356777778899999999999999 8899999999999999999875 3543 457888764322
Q ss_pred ----------CCeEeeCCCChHHHHHHHHHh-CCCCCCCeEEEEEccccccCCCCCC--CccceeEeeEEEeccCCh-hH
Q 022115 140 ----------NRRVALRPELTPSLARLVIQK-GKSVSLPLKWFAVGQCWRYERMTRG--RRREHYQWNMDIIGVPAV-TA 205 (302)
Q Consensus 140 ----------G~~l~LRpDlT~~iaR~~a~~-~~~~~~P~K~~yig~VfR~e~~~~g--r~rEf~Q~g~EiiG~~~~-~a 205 (302)
+..++|.|...+|+.-++... .. ...|+|+.-.|+|||+|.. .| |.++|+|..+-+|+.+.. .+
T Consensus 131 ~~~~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i-~~~plr~~~~g~CFR~EaS-~GL~RvhqF~kvE~v~~~tpEqs~~ 208 (346)
T 3mf2_A 131 AGGDWTTSLSPADLVLSPAACYPVYPIAASRGPL-PKGGLRFDVAADCFRREPS-KHLDRLQSFRMREYVCIGTPDDVSD 208 (346)
T ss_dssp TTSCGGGGEEEEEEEECSSSSTTHHHHHHTTCSC-CTTCEEEEEEEEEECCCCC-SSTTSCSEEEEEEEEEEESHHHHHH
T ss_pred cccccccccCCCCEEEcccccHHHHHHHccCCcc-cccCeEEEEECCccCCcCC-CCCeeeeeeEEEEEEEEeCHHHHHH
Confidence 347999999999999998853 22 2459999999999999974 35 789999999999996433 23
Q ss_pred H-HHHHHHHHHHHHHcCCCCCceEEEeC
Q 022115 206 E-AELISSIITFFKRIGITASDVGFRIS 232 (302)
Q Consensus 206 D-aEvi~l~~eil~~lgl~~~~~~I~ig 232 (302)
+ .+++..+.++++.|||+ |.+.+.
T Consensus 209 e~e~l~~~ae~il~~LgLp---yrv~~~ 233 (346)
T 3mf2_A 209 FRERWMVRAQAIARDLGLT---FRVDYA 233 (346)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEC
T ss_pred HHHHHHHHHHHHHHHCCCC---EEEEEc
Confidence 3 36788999999999996 666653
No 46
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=98.99 E-value=3.1e-09 Score=104.97 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHH-HHHHhCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLAR-LVIQKGKS 163 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR-~~a~~~~~ 163 (302)
-.++|..|...+++.|..+||.||+||++.+.. .|. ..++|.+. |..|+.+.|| ..+++.. .+...
T Consensus 173 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~-----~Ga--~a~~F~~~~~~~~~~~yLr--~SpqLylk~l~v~--- 240 (493)
T 3a74_A 173 TFITRSLIIQSMRRYLDSHGYLEVETPMMHAVA-----GGA--AARPFITHHNALDMTLYMR--IAIELHLKRLIVG--- 240 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEEC--SCSHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEECCeEEecC-----CCC--cccceEecccCCCceeEEe--cCHHHHHHHHhhc---
Confidence 456788999999999999999999999998641 122 34677775 6678899999 3333332 22221
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
-.-|+|++|+|||+|..+..|..||+|+++|..+.+ ..+++.++.+.+..+
T Consensus 241 --G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af~d----~~dlm~l~E~ll~~l 291 (493)
T 3a74_A 241 --GLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAYAD----FRDIMKLTENLIAHI 291 (493)
T ss_dssp --TCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred --ccCceEEECccccCCCCCcccCCceeEEEEEecCCC----HHHHHHHHHHHHHHH
Confidence 156999999999999888888999999999999975 345555555544433
No 47
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.85 E-value=3.5e-08 Score=97.36 Aligned_cols=161 Identities=20% Similarity=0.295 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecC-CcccchHH-hhhhh---cccc--ccccEEEeeCC-------------------
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDF-PVLESEAL-FIRKA---GEEI--RDQLYCFEDRG------------------- 139 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~t-P~le~~d~-~~~~~---g~~~--~~~~~~f~D~~------------------- 139 (302)
...-...+.+.++++|...||.++.+ |.+++... |..-. .+.. ...+|.+.++.
T Consensus 223 ~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He~ 302 (508)
T 3l4g_A 223 HLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQ 302 (508)
T ss_dssp BCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhhc
Confidence 44567888999999999999999875 88876432 22110 1110 12345555431
Q ss_pred ----------------CCeEeeCCCChHHHHHHHHHhCC-CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCC
Q 022115 140 ----------------NRRVALRPELTPSLARLVIQKGK-SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA 202 (302)
Q Consensus 140 ----------------G~~l~LRpDlT~~iaR~~a~~~~-~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~ 202 (302)
++..+||+.+|+..+|.+..+.. ....|+|+|++|+|||++.....+..+|+|++.-++|.+-
T Consensus 303 g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~v 382 (508)
T 3l4g_A 303 GGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGL 382 (508)
T ss_dssp CBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEESC
T ss_pred cccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCCC
Confidence 15799999999999999988643 2356999999999999998778889999999998887643
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCC------------ceE-----------EEeCChHHHH-HHHHhCCCCh
Q 022115 203 VTAEAELISSIITFFKRIGITAS------------DVG-----------FRISSRKVLQ-EVLRCHSIPE 248 (302)
Q Consensus 203 ~~aDaEvi~l~~eil~~lgl~~~------------~~~-----------I~igh~~il~-~il~~~gl~~ 248 (302)
.-.++..++..+++.+|+..- .+. ++||..+.+. .+++.+|+++
T Consensus 383 --~f~dLKg~Le~~l~~lG~~~~rfrps~fPftePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~~Gipe 450 (508)
T 3l4g_A 383 --TLGHLMGVLREFFTKLGITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPE 450 (508)
T ss_dssp --CHHHHHHHHHHHHHTTTCCCCEEEECCCTTCSSEEEEEECCSTTSSCEEEEEEECCCHHHHGGGTCCT
T ss_pred --CHHHHHHHHHHHHHHcCCcceEeeccCCCCCCCeEEEEEEECCccceEEEEeeeeEcHHHHHHCCCCC
Confidence 346788888999999987410 011 4555555554 7788888864
No 48
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=98.85 E-value=1.7e-08 Score=98.55 Aligned_cols=137 Identities=14% Similarity=0.163 Sum_probs=94.7
Q ss_pred CCCc-cCChHHHHHHHHHHHHHHHHHHH-cC-CeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHH
Q 022115 77 KGTR-DFPPEDMRLRNWLFHNFQEVSRL-FG-FEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSL 153 (302)
Q Consensus 77 ~G~~-d~lp~~~~~~~~i~~~l~~vf~~-~G-y~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~i 153 (302)
.|.. ||.|.++.+++.|.+.+.+.|.. .| +.+|+||..+. |. .+|+. .-|+ ++|||+...-+
T Consensus 93 ~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~---~~-~SGH~---d~~~--------~~LRPeTaqg~ 157 (459)
T 3ikl_A 93 SGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP---GP-LLPGD---SAFR--------GGLRENLLHGA 157 (459)
T ss_dssp TTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC---SC-CCSSC---SCCT--------TB-CSCSHHHH
T ss_pred cccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc---cc-cCcch---hhhc--------ceECCCCChhH
Confidence 3444 99999999999999977777764 67 66699999554 32 35653 1122 89999876665
Q ss_pred HHHHHHhCC--CCCCCeEEEEEccccccCC----CCCC--CccceeEeeEEEeccCChhHH--HHHHHHHHHHHHHcCCC
Q 022115 154 ARLVIQKGK--SVSLPLKWFAVGQCWRYER----MTRG--RRREHYQWNMDIIGVPAVTAE--AELISSIITFFKRIGIT 223 (302)
Q Consensus 154 aR~~a~~~~--~~~~P~K~~yig~VfR~e~----~~~g--r~rEf~Q~g~EiiG~~~~~aD--aEvi~l~~eil~~lgl~ 223 (302)
.-.+..... ..++|+++.++|+|||+|. +..| |.|||+|..+++|-.++...+ ..++..+.++++.||+.
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~ 237 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMS 237 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444332211 1368999999999999983 4444 789999999999976544322 35688899999999997
Q ss_pred CCceE
Q 022115 224 ASDVG 228 (302)
Q Consensus 224 ~~~~~ 228 (302)
..++.
T Consensus 238 ~~~~r 242 (459)
T 3ikl_A 238 PSNFS 242 (459)
T ss_dssp GGGEE
T ss_pred hhhEE
Confidence 43443
No 49
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=98.81 E-value=4.6e-08 Score=96.85 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|.+|...+++.|..+||.||+||++.+.. .|. ..+.|.+. +..|..+.||----.-.-++++. +
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~-----~Ga--~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~-G--- 250 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIP-----GGA--SARPFITHHNALDLDMYLRIAPELYLKRLVVG-G--- 250 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESSC-----CSS--CCCCCEEEETTTTEEEEECSCSHHHHHHHHHH-T---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEecC-----CCC--cccceEeccCCCCceEEeccCHHHHHHHHhhc-C---
Confidence 446788899999999999999999999998541 121 24567664 45688899993222222233333 2
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHH
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFK 218 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~ 218 (302)
.-|+|+||+|||+|..+..|..||+|+++|..+.+ ..+++.++.+.+.
T Consensus 251 --~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~dlm~l~E~li~ 298 (504)
T 1e1o_A 251 --FERVFEINRNFRNEGISVRHNPEFTMMELYMAYAD----YHDLIELTESLFR 298 (504)
T ss_dssp --CCEEEEEEEEECCCCCCC-CCSEEEEEEEEEESCC----HHHHHHHHHHHHH
T ss_pred --CCcEEEEcccccCCCCCccccCceeeeeeeecCCC----HHHHHHHHHHHHH
Confidence 45999999999999888888999999999999975 2345554444443
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=98.80 E-value=4e-08 Score=92.97 Aligned_cols=122 Identities=13% Similarity=0.103 Sum_probs=85.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe--e---CCCCeEeeCCCChHHHHHHH
Q 022115 83 PPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE--D---RGNRRVALRPELTPSLARLV 157 (302)
Q Consensus 83 lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~--D---~~G~~l~LRpDlT~~iaR~~ 157 (302)
.-.-.++|.+|...+++.|..+||.||+||++.... +++...+.|++. + ..+....|+----.-.-|.+
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~------~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQAT------VTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------CCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecC------CCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 446779999999999999999999999999998643 222233455542 1 11245667733222233444
Q ss_pred HHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 158 IQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 158 a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
+.. --|+|+||+|||+|.....|..||+|+++|..+.+ ..+++.++.+.+..+
T Consensus 106 ~~g------~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d----~~d~m~~~E~li~~v 158 (345)
T 3a5y_A 106 VAG------CGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD----MYRLMNEVDDLLQQV 158 (345)
T ss_dssp HTT------CCSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC----HHHHHHHHHHHHHHH
T ss_pred HcC------CCcEEEEEcceeCCCCcccccchhheeeeeeeCCC----HHHHHHHHHHHHHHH
Confidence 442 23999999999999887778899999999999975 235666666666554
No 51
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=98.73 E-value=4.5e-08 Score=97.06 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=66.1
Q ss_pred eEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
..+||+.+++.+...+..+......|+|+|++|+|||++.+ +.++.+||+|+++.+.|.+... .++..++..+++.+
T Consensus 180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf--~dLKgilE~LL~~L 257 (534)
T 2du3_A 180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSV--DDGKAVAEALLRQF 257 (534)
T ss_dssp EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCH--HHHHHHHHHHHGGG
T ss_pred ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCCCCH--HHHHHHHHHHHHHc
Confidence 58999999998888777765545679999999999998766 6678899999999999975433 57888888888888
Q ss_pred CCC
Q 022115 221 GIT 223 (302)
Q Consensus 221 gl~ 223 (302)
|+.
T Consensus 258 Gi~ 260 (534)
T 2du3_A 258 GFE 260 (534)
T ss_dssp TCC
T ss_pred CCC
Confidence 863
No 52
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.66 E-value=5.5e-07 Score=85.27 Aligned_cols=145 Identities=20% Similarity=0.308 Sum_probs=101.1
Q ss_pred ccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhh-hccc--c--ccccEEEeeCCC---
Q 022115 70 KIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEE--I--RDQLYCFEDRGN--- 140 (302)
Q Consensus 70 ~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~-~~~~-~g~~--~--~~~~~~f~D~~G--- 140 (302)
.++...|..... +....-...+.+.++++|...||.|+.+|.+++... |... .... . ..+.|.+.++..
T Consensus 85 ~i~~tlP~~~~~--~g~~hp~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~ 162 (350)
T 1b7y_A 85 RVDVSLPGASLF--SGGLHPITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLE 162 (350)
T ss_dssp -CCTTSCCCCCC--CCBCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCB
T ss_pred CCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCcccccc
Confidence 356666632221 122334677888999999999999999999987532 2221 1110 0 134566765533
Q ss_pred --------CeEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHH
Q 022115 141 --------RRVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISS 212 (302)
Q Consensus 141 --------~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l 212 (302)
...+||..+++..+|.++.+ ..|+|+|.+|+|||++.....+..||+|+..-++|.+.. -.++..+
T Consensus 163 ~~~~~~~~~~~vLRt~tsp~llr~l~~~----~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~v~--f~dLKg~ 236 (350)
T 1b7y_A 163 GPLGEEVEGRLLLRTHTSPMQVRYMVAH----TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEGIA--MAHLKGA 236 (350)
T ss_dssp CTTSCBCCSCEEECSSSTHHHHHHHHHC----CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETTCC--HHHHHHH
T ss_pred ccccccccccceeeccchHHHHHHHHhc----CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCCCC--HHHHHHH
Confidence 77899999999999999873 359999999999998653444678999999999997433 2466677
Q ss_pred HHHHHHHc-CC
Q 022115 213 IITFFKRI-GI 222 (302)
Q Consensus 213 ~~eil~~l-gl 222 (302)
+..+++.+ |.
T Consensus 237 le~ll~~lfG~ 247 (350)
T 1b7y_A 237 IYELAQALFGP 247 (350)
T ss_dssp HHHHHHHHSCS
T ss_pred HHHHHHhhcCC
Confidence 77788877 75
No 53
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=98.55 E-value=6.9e-07 Score=88.68 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeC--------------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDR-------------------------- 138 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~-------------------------- 138 (302)
.-...+.+.++++|...||.++..|.++...-.....|+.. .+++|.+.++
T Consensus 57 HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~~n~pq~ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~ 136 (549)
T 2du7_A 57 HPVMETIERLRQAYLRMGFEEMINPVIVDEMEIYKQFGPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEK 136 (549)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSCEEHHHHHHHTCTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCC
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCeEeehHHhCCCcCCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccch
Confidence 44677889999999999999999999986543222223321 2225655532
Q ss_pred ------------CC----------------------------------------CeEeeCCCChHHHHHHHHHhCCCCCC
Q 022115 139 ------------GN----------------------------------------RRVALRPELTPSLARLVIQKGKSVSL 166 (302)
Q Consensus 139 ------------~G----------------------------------------~~l~LRpDlT~~iaR~~a~~~~~~~~ 166 (302)
.+ +..+||+.+++.+...+..+....+.
T Consensus 137 ~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~~ 216 (549)
T 2du7_A 137 KERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKL 216 (549)
T ss_dssp SSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCCCSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCS
T ss_pred hhhhhhhhhhhccCCCchhhhhhHhhhhhhcccccccccccccchhhccccccccccccccccchhHHHHHHHHHhcCCC
Confidence 11 36799999999887777776444567
Q ss_pred CeEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 167 PLKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 167 P~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
|+|+|.+|+|||.+.. ...+.+||+|+++-++|.+. .-.++..++..+++.+|+
T Consensus 217 pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~v--dF~DLKG~Le~ll~~LGi 271 (549)
T 2du7_A 217 PLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDV--SVDDGKVVAEGLLAQFGF 271 (549)
T ss_dssp SEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTC--CHHHHHHHHHHHHGGGTC
T ss_pred CeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCCC--CHHHHHHHHHHHHHHcCC
Confidence 9999999999997653 44567999999999999742 345777788888888776
No 54
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=98.54 E-value=8e-07 Score=86.48 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeC--CCChHHHHHHHHHhCC
Q 022115 85 EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALR--PELTPSLARLVIQKGK 162 (302)
Q Consensus 85 ~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LR--pDlT~~iaR~~a~~~~ 162 (302)
.-.++|.+|...+++.|..+||.||+||++...+. .|. .++|.+ +--|+.+.|+ |++-... .++.
T Consensus 130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~----eG~---~~~F~~-~~~g~~~~L~~SpqLylq~--l~~g--- 196 (435)
T 2xgt_A 130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQV----EGG---STLFNL-DYFGEQSFLTQSSQLYLET--CIPT--- 196 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCS----SCT---TSCCEE-EETTEEEEECSCSHHHHHH--HHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccC----CCc---hhceee-ccCCcccccCCChHHHHHH--hhhc---
Confidence 35578899999999999999999999999975432 121 234544 4457788888 5544332 2222
Q ss_pred CCCCCeEEEEEccccccCCCCCCC-ccceeEeeEEEeccC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGR-RREHYQWNMDIIGVP 201 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr-~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|.....| .-||+|+++|..+.+
T Consensus 197 ----~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d 232 (435)
T 2xgt_A 197 ----LGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFIT 232 (435)
T ss_dssp ----HCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCC
T ss_pred ----cCceEEEecceecCCCCccccccceeEEEEEEecCC
Confidence 23999999999999876545 459999999999975
No 55
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=98.54 E-value=6.3e-07 Score=87.30 Aligned_cols=104 Identities=13% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-.++|..+...+++.|..+||.||+||++...+. . | ..++|.+. --|+.+.|+----...-++++..
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~--e--g---~~~~f~~~-~~~~~~yL~~Spql~~q~l~~~g----- 202 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT--E--G---GTELFPMK-YFEEDAFLAQSPQLYKQIMMASG----- 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--S--C---SSSCCEEE-ETTEEEEECSCSHHHHHHGGGTT-----
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC--C--C---CccceeEe-eCCccEEEecChHHHHHHHHhcC-----
Confidence 4578889999999999999999999999987542 1 2 13456553 34677889844333333333221
Q ss_pred CCeEEEEEccccccCCCCCCC-ccceeEeeEEEeccCCh
Q 022115 166 LPLKWFAVGQCWRYERMTRGR-RREHYQWNMDIIGVPAV 203 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~gr-~rEf~Q~g~EiiG~~~~ 203 (302)
--|+|+||+|||+|....+| ..||+|+++|..+.++.
T Consensus 203 -~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~ 240 (438)
T 3nem_A 203 -LDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDE 240 (438)
T ss_dssp -CCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSH
T ss_pred -CCceEEEcceEECCCCCCcccccceeeeeeeeccCccH
Confidence 44999999999999776554 56999999999998743
No 56
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=98.45 E-value=2.1e-06 Score=79.31 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=97.0
Q ss_pred ccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHH-hhhh-hccc-c---ccccEEEeeCCCC
Q 022115 68 LQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEAL-FIRK-AGEE-I---RDQLYCFEDRGNR 141 (302)
Q Consensus 68 ~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~-~~~~-~g~~-~---~~~~~~f~D~~G~ 141 (302)
.++++..+|..... +....-..++.+.++++|...||.|+.+|.+++... |... .... . ..+.+.+. .
T Consensus 35 yd~i~~tlp~~~~~--~g~~~~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e 108 (294)
T 2rhq_A 35 EETIDVTLPSRQIS--IGSKHPLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----D 108 (294)
T ss_dssp TTCCCTTSCCCCCC--CCCCCHHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----S
T ss_pred cccCCccCCCcccC--CCCCCHHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----C
Confidence 33466666633211 122234667888899999999999999999987532 2221 1110 0 01234442 5
Q ss_pred eEeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc-
Q 022115 142 RVALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI- 220 (302)
Q Consensus 142 ~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l- 220 (302)
..+||+.+++.+.|.++.+. ...|.|+|.+|+|||++.....+..||+|+++-+.|.+... .++..++..+++.+
T Consensus 109 ~~vLRtsl~p~ll~~l~~N~--~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~~df--~dlKg~le~ll~~l~ 184 (294)
T 2rhq_A 109 EILMRTHTSPVQARTMEKRN--GQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKM--SDLKGTLELVAKKLF 184 (294)
T ss_dssp SEEECSSSHHHHHHHHHHTT--TCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESSCCH--HHHHHHHHHHHHHHH
T ss_pred cceeeccCHHHHHHHHHhcC--CCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCCCCH--HHHHHHHHHHHHHHh
Confidence 58999999999999999875 34699999999999975322335579999999999964322 35556666777776
Q ss_pred CC
Q 022115 221 GI 222 (302)
Q Consensus 221 gl 222 (302)
|+
T Consensus 185 g~ 186 (294)
T 2rhq_A 185 GA 186 (294)
T ss_dssp CT
T ss_pred CC
Confidence 75
No 57
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.36 E-value=1e-05 Score=81.17 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC-------------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG------------------------- 139 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~~------------------------- 139 (302)
.-...+.+.++++|...||.++..|.++...-.....|+.. .+++|.+.++.
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (648)
T 2odr_B 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (648)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeehhhhCCCcCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34577888999999999999999999986432212223321 12255554321
Q ss_pred ----------------------------------------------------CCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 140 ----------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 140 ----------------------------------------------------G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
.+..+||+.+++.+...+..+......|
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~p 224 (648)
T 2odr_B 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (648)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCCC
Confidence 1357999999997777777765445679
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
+|+|.+|+|||.+.. ...+..||+|++.-+.|.+... .++..++..+++.+|+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LGi 278 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 999999999997643 3345789999999999974332 4667777778887776
No 58
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.35 E-value=1.1e-05 Score=81.14 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC-------------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG------------------------- 139 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~~------------------------- 139 (302)
.-...+.+.++++|...||.++..|.++...-.....|+.. .+++|.+.++.
T Consensus 65 HPl~~~~~~IR~if~~mGF~E~~~p~vese~~n~pq~gHpAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (665)
T 2odr_A 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (665)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34577888999999999999999999986432212223321 12255554321
Q ss_pred ----------------------------------------------------CCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 140 ----------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 140 ----------------------------------------------------G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
.+..+||+.+++.+...+..+......|
T Consensus 145 ~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~sVLRTSLlPGLL~~lr~N~~R~~~p 224 (665)
T 2odr_A 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (665)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhcCCCC
Confidence 1357999999997777777765445679
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
+|+|.+|+|||.+.. ...+..||+|++.-+.|.+... .++..++..+++.+|+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF--~DLKGvLE~LL~~LGi 278 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 999999999997643 3345789999999999974332 4667777778887776
No 59
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.34 E-value=1.1e-05 Score=81.17 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC-------------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG------------------------- 139 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~~------------------------- 139 (302)
.-...+.+.++++|...||.++..|.++...-.....|+.. .+++|.+.++.
T Consensus 65 HPl~~~~~~IReif~~mGF~E~~~p~vese~~n~pq~gHPAR~~~D~tFyL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (685)
T 2odr_D 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (685)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEBCCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeehHHhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34577888999999999999999999986432212223321 12255554321
Q ss_pred ----------------------------------------------------CCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 140 ----------------------------------------------------NRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 140 ----------------------------------------------------G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
.+..+||+.+++.+...+..+......|
T Consensus 145 ~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~p 224 (685)
T 2odr_D 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (685)
T ss_dssp ---------------------------------------------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCC
Confidence 1357999999997777777765445679
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
+|+|.+|+|||.+.. ...+..||+|++.-+.|.+... .++..++..+++.+|+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF--~DLKGvLE~LL~~LGi 278 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 999999999997643 3345789999999999974332 4667777778887776
No 60
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=98.33 E-value=5e-06 Score=83.73 Aligned_cols=100 Identities=18% Similarity=0.323 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHH-HHhCCC
Q 022115 87 MRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLV-IQKGKS 163 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~~-a~~~~~ 163 (302)
.++|.+|...+++.|..+||.||+||++..... -|. . -|.+.. ..|..++|+ ..+++.... ...+
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~----eGA---r-~F~v~~~~~~~~~y~L~--qSPQl~kq~Lmv~G-- 205 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTKATP----EGA---R-DYLVPSRVHKGKFYALP--QSPQLFKQLLMMSG-- 205 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS---C-CCEEECSSSTTCEEECC--SCSHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC---c-cceecccccCCceEeCc--cCHHHHHHHHHhcC--
Confidence 467888999999999999999999999985421 121 1 244332 256777788 344444433 2222
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|.....|.-||+|+++|.-..+
T Consensus 206 ---~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d 240 (585)
T 1c0a_A 206 ---FDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT 240 (585)
T ss_dssp ---CCEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred ---CCceEEEeceeecCCCCCCcCcccceeeeeecCCC
Confidence 23999999999999766666559999999999875
No 61
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=98.33 E-value=1.2e-05 Score=81.07 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc---ccccEEEeeCC-------------------------
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI---RDQLYCFEDRG------------------------- 139 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~---~~~~~~f~D~~------------------------- 139 (302)
.-...+.+.++++|...||.++..|.++...-.....|+.. .+++|.+.++.
T Consensus 65 HPl~~~~~~IReif~~mGF~Ev~~p~Vese~~n~pq~gHPAR~~~D~tFYL~~P~~~~vg~~~~~~~~i~~~g~~is~~~ 144 (701)
T 2odr_C 65 HPVNDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHK 144 (701)
T ss_dssp CHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHGGGHHHHHHTCEEEEECCC------------------------
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCEEeeehhhCCCcCCCccccCCcEEEECCCCCCccccchhhhhhhhhcccccchhh
Confidence 34577888999999999999999999986432212223321 12255554321
Q ss_pred ------------C----------------------------------------CeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 140 ------------N----------------------------------------RRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 140 ------------G----------------------------------------~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
| +..+||+.+++.+...+..+....+.|
T Consensus 145 ~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~sVLRTSLlPGLL~~vr~N~~R~~~p 224 (701)
T 2odr_C 145 ESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLP 224 (701)
T ss_dssp ---------------------------------------------CCCCCCEEEEEEECCCTHHHHHHHHHHHTTTSCSC
T ss_pred hhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCcccccCcccccchhhHHHHHHHHHhCCCCC
Confidence 1 256999999997777777765445679
Q ss_pred eEEEEEccccccCCC-CCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCC
Q 022115 168 LKWFAVGQCWRYERM-TRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGI 222 (302)
Q Consensus 168 ~K~~yig~VfR~e~~-~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl 222 (302)
+|+|.+|+|||.+.. ...+..||+|++.-+.|.+... .++..++..+++.+|+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF--~DLKGvLE~LL~~LGi 278 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDI--NDGKAIAEGLLSQFGF 278 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCH--HHHHHHHHHHHHTTTC
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCH--HHHHHHHHHHHHHcCC
Confidence 999999999997643 3345789999999999974332 4667777778887776
No 62
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=98.32 E-value=4.6e-06 Score=83.83 Aligned_cols=101 Identities=21% Similarity=0.371 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEee--CCCCeEeeCCCChHHHHHHH-HHhCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED--RGNRRVALRPELTPSLARLV-IQKGK 162 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D--~~G~~l~LRpDlT~~iaR~~-a~~~~ 162 (302)
-.++|.+|...+++.|..+||.||+||++..... .|. +-|.+.. ..|..++|+ ..+++.... ...+
T Consensus 143 ~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~----eGA----r~F~v~~~~~~~~~y~L~--qSPQl~kq~Lmv~G- 211 (580)
T 1l0w_A 143 NLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTP----EGA----RDFLVPYRHEPGLFYALP--QSPQLFKQMLMVAG- 211 (580)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCS----SSS----CCCEEECTTSTTEEEECC--SCSHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCC----CCC----CCccccccccCCceeECc--cCHHHHHHHHHHhc-
Confidence 3467889999999999999999999999985421 121 1243322 246667787 344554443 2222
Q ss_pred CCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 163 SVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|.....|.-||+|+++|.-..+
T Consensus 212 ----~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d 246 (580)
T 1l0w_A 212 ----LDRYFQIARCFRDEDLRADRQPDFTQLDLEMSFVE 246 (580)
T ss_dssp ----CSEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred ----cCCeEEEeceeeCCCCCCCcCCCccceeeeecCCC
Confidence 23999999999999776666559999999999975
No 63
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=98.29 E-value=8.7e-06 Score=80.89 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEe-eCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFE-DRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~-D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|..+||.||+||++.... |+ ...+.|... +.-|..+.||----.-.-|.++. +
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~------gG-a~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~-g--- 243 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNIIP------GG-AVAKPFITYHNELDMNLYMRIAPELYHKMLVVG-G--- 243 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC------CS-SSCCCCEEEETTTTEEEEECSCSHHHHHHHHHT-T---
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeeccC------CC-ccccceeeecccCCcceEeeCCHHHHHHHHHhc-C---
Confidence 446788899999999999999999999998532 22 123455443 33577889983332223334443 2
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|....-|.-||+|+.+|.-..+
T Consensus 244 --~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 244 --IDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD 278 (521)
T ss_dssp --CCEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred --cCceEEEEcceeCCCCCCccchhhhhhhhhhhcCC
Confidence 23999999999999766667789999999999875
No 64
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=98.28 E-value=9.2e-06 Score=80.70 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEE-eeCCCCeEeeCCCChHHHHHHHHHhCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCF-EDRGNRRVALRPELTPSLARLVIQKGKSV 164 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f-~D~~G~~l~LRpDlT~~iaR~~a~~~~~~ 164 (302)
-.++|..|...+++.|..+||.||+||++.... .|. ..+.|.. .+.-|..+.||----.-.-|.++.-
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~-----gGA--~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G---- 271 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIP-----GGA--AAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG---- 271 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC-----CSS--SSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC-----CCC--cccccccccccCCcceecccCHHHHHHHHHhcC----
Confidence 457888999999999999999999999998431 121 2234433 2334677788833322233444432
Q ss_pred CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccC
Q 022115 165 SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVP 201 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|.....|..||+|+++|.-..+
T Consensus 272 --~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 272 --FERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp --CSEEEEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred --CCcEEEeehheecCCCCCCcccHhHhhhhhhhcCC
Confidence 34999999999999776667889999999999875
No 65
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=98.26 E-value=7.1e-06 Score=80.26 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
-.++|..|...+++.|..+||.||+||++...+.- |. .++|.+ |--|+...|+---..-.-++++.
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~e----Gg---~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g------ 220 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE----GG---STLFKL-QYFNEPAYLTQSSQLYLESVIAS------ 220 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC-------------CCCCEE-EETTEEEEECSCCHHHHHTTHHH------
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCC----Cc---cccccc-cccCCCcccccCHHHHHHHHHhc------
Confidence 35788999999999999999999999999754321 21 234443 44567778875544444344432
Q ss_pred CCeEEEEEccccccCCCCCC-CccceeEeeEEEeccC
Q 022115 166 LPLKWFAVGQCWRYERMTRG-RRREHYQWNMDIIGVP 201 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~~~g-r~rEf~Q~g~EiiG~~ 201 (302)
--|+|+||+|||+|..... |.-||+|+++|.-+.+
T Consensus 221 -~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d 256 (456)
T 3m4p_A 221 -LGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFIS 256 (456)
T ss_dssp -HSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCC
T ss_pred -cCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCC
Confidence 2389999999999976533 4579999999999975
No 66
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=98.11 E-value=2e-05 Score=78.52 Aligned_cols=98 Identities=20% Similarity=0.245 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHH--HHHHHhCCC
Q 022115 86 DMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLA--RLVIQKGKS 163 (302)
Q Consensus 86 ~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~ia--R~~a~~~~~ 163 (302)
-.++|..+...+++.|..+||.||+||++..... . | ..+.|.+ +--|..+.|+- .+++. +.++. +
T Consensus 243 ~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--e--g---ga~~F~v-~~~~~~~yL~~--Spql~~k~ll~~-g-- 309 (548)
T 3i7f_A 243 IFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSS--E--G---GSNIFEV-KYFDRKAYLAQ--SPQLYKQMAIMG-D-- 309 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSBC---------------------------CCBCS--CTHHHHHHHHTT-T--
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccC--C--C---CcceeEE-ecCCCceEecc--CHHHHHHHHHhc-C--
Confidence 3578899999999999999999999999987642 1 1 1234433 22345567773 33444 33332 1
Q ss_pred CCCCeEEEEEccccccCCCCC-CCccceeEeeEEE-ec
Q 022115 164 VSLPLKWFAVGQCWRYERMTR-GRRREHYQWNMDI-IG 199 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~-gr~rEf~Q~g~Ei-iG 199 (302)
--|+|+||+|||.|.... .|.-||+|+++|. ++
T Consensus 310 ---~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af~ 344 (548)
T 3i7f_A 310 ---FRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIV 344 (548)
T ss_dssp ---CCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEECS
T ss_pred ---cCcEEEEeeeEecCCCCCCCcchhhhchhhhhhhh
Confidence 349999999999997643 3567999999997 55
No 67
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=98.09 E-value=4.5e-05 Score=67.00 Aligned_cols=133 Identities=17% Similarity=0.161 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCCe
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~ 168 (302)
..++++.+++.+...||.|+.|-+|...+.+.. .+.......+++.++ +...-+||+.+.+.+.+.++.|......++
T Consensus 6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~ 84 (213)
T 3ica_A 6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEG-LKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTT-CSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhh-hcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCe
Confidence 457888999999999999999988877665432 221112355677776 667889999999999999998765444569
Q ss_pred EEEEEccccccCCCC------CCCccceeEeeEEEeccC--------ChhHH-HHHHHHHHHHHHHcCCC
Q 022115 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP--------AVTAE-AELISSIITFFKRIGIT 223 (302)
Q Consensus 169 K~~yig~VfR~e~~~------~gr~rEf~Q~g~EiiG~~--------~~~aD-aEvi~l~~eil~~lgl~ 223 (302)
|+|.+|+||+.+... .+.+.|..++++-+.|.. ....| .++-.++..++..+|+.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~ 154 (213)
T 3ica_A 85 YLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIE 154 (213)
T ss_dssp EEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999975311 123578888988888842 11123 46777888889999985
No 68
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=98.08 E-value=4.7e-05 Score=66.90 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCCe
Q 022115 90 RNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPL 168 (302)
Q Consensus 90 ~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~ 168 (302)
..++.+.+++.+...||.|+.|-+|...+.+.. .+.....+.+++.++ +...-+||+.+.+.+.+.++.|......++
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~-~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v 84 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDG-LESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADL 84 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTT-CSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CC
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHh-hcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCe
Confidence 456788899999999999999988877665432 221112456778776 566789999999999999998765445579
Q ss_pred EEEEEccccccCCCC------CCCccceeEeeEEEeccC--------ChhHH-HHHHHHHHHHHHHcCCC
Q 022115 169 KWFAVGQCWRYERMT------RGRRREHYQWNMDIIGVP--------AVTAE-AELISSIITFFKRIGIT 223 (302)
Q Consensus 169 K~~yig~VfR~e~~~------~gr~rEf~Q~g~EiiG~~--------~~~aD-aEvi~l~~eil~~lgl~ 223 (302)
|+|.+|+||+.+... .+.+.|..++++=+.|.. ....| .++-.++..++..+|+.
T Consensus 85 ~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~ 154 (213)
T 3ig2_A 85 KFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLD 154 (213)
T ss_dssp EEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBC
T ss_pred eEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence 999999999975311 123578888888888841 12234 45667888889999885
No 69
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=98.04 E-value=6.2e-05 Score=75.96 Aligned_cols=115 Identities=21% Similarity=0.346 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHH-HcCCeeecCCcccchHHhhhhhccccccccEEEee-CCCCeEeeCCCChHHHHHH-HHHhCCC
Q 022115 87 MRLRNWLFHNFQEVSR-LFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFED-RGNRRVALRPELTPSLARL-VIQKGKS 163 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~-~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D-~~G~~l~LRpDlT~~iaR~-~a~~~~~ 163 (302)
.++|..+...+++.|. .+||.||+||++..... .|. .-|.+.. ..|+.+.|+- .+++... +...+
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~----~GA----~~F~v~~~~~g~~~~L~q--Spql~kq~l~v~g-- 215 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTP----GGA----KEFLVPSREPGKFYSLPQ--SPQQFKQLLMVGG-- 215 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCC----SSS----CCCEEECSSTTCEEECCS--STTHHHHHHHHTS--
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCC----CCC----cCceeccccCCccccccc--CHHHHHHHHHhcc--
Confidence 4678899999999996 79999999999975321 121 2243322 2577788873 2333332 22222
Q ss_pred CCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 164 VSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 164 ~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
--|+|+||+|||.|.....|..||+|+++|.-..+- .+++.++.+++..+
T Consensus 216 ---~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d~----~d~m~~~E~l~~~~ 265 (617)
T 4ah6_A 216 ---LDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQ----TGIQSLIEGLLQYS 265 (617)
T ss_dssp ---CSEEEEEEEEECCCSSCSSSCSEEEEEEEEEESCCH----HHHHHHHHHHHHHH
T ss_pred ---cCcEEEEEhheecccCCCCcCcceecceeeecCCCH----HHHHHHHHHHHHHH
Confidence 239999999999997777778899999999988752 34555555555443
No 70
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=98.03 E-value=4.2e-05 Score=77.03 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=103.3
Q ss_pred cccccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhcccc-ccccEEEeeC-CCCeEe
Q 022115 67 DLQKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEI-RDQLYCFEDR-GNRRVA 144 (302)
Q Consensus 67 ~~~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~-~~~~~~f~D~-~G~~l~ 144 (302)
+-++++..+|.... .. ...-..++.+.+++.+...||.|+.|..|...+......+-.. ..+.+++.++ +...-+
T Consensus 373 GYdnIp~tlP~~~~-~g--~~~~~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~sv 449 (589)
T 3l4g_B 373 GYNNIQMTLPKTYT-IA--NQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQV 449 (589)
T ss_dssp CGGGSCCCCCCCCC-CC--CCCHHHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSE
T ss_pred CcccCCCcCCCccc-cC--CCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhH
Confidence 34456666665421 11 1123455688899999999999999999987663222222111 1346677776 445679
Q ss_pred eCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCC
Q 022115 145 LRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGIT 223 (302)
Q Consensus 145 LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~ 223 (302)
||+.+.+.+.+.++.|.+ .+.|+|+|.+|+|||.+.....+.+|+.|+++-+.|..... .++-.++..+++.+|+.
T Consensus 450 mRtsLlpgLL~~l~~N~~-~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~~~f--~~lkg~le~ll~~lg~~ 525 (589)
T 3l4g_B 450 ARTTLLPGLLKTIAANRK-MPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNPGF--EIIHGLLDRIMQLLDVP 525 (589)
T ss_dssp ECSCSHHHHHHHHHHTTT-SCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEESSSCCH--HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhc-CCCceEEEEeeeEEecCCccccCCccccEEEEEEECCCCCH--HHHHHHHHHHHHHcCCC
Confidence 999999999999998755 34699999999999976433334678999998888864322 34555677788888875
No 71
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=97.87 E-value=6.2e-05 Score=78.29 Aligned_cols=150 Identities=11% Similarity=0.051 Sum_probs=103.3
Q ss_pred cccccccCCCC-CCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccc-cEEEeeC-CCCeE
Q 022115 67 DLQKIDVNPPK-GTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQ-LYCFEDR-GNRRV 143 (302)
Q Consensus 67 ~~~~~~~~~p~-G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~-~~~f~D~-~G~~l 143 (302)
+-++++..+|. +.. .+.......++.+.+++.+...||.|+.|..|...+.+ ...+. ..+ .+++.++ +...-
T Consensus 473 GydnIp~tlP~~~~~--~~g~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~~v~L~NPis~e~s 547 (795)
T 2rhq_B 473 GYDEIPSSLPVFGEV--TSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHA-KDFAL--QERPTISLLMPMSEAHA 547 (795)
T ss_dssp CTTTSCCCCCCCSSC--CCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTT-TTTCS--SCCCCEECSSCSCTTSS
T ss_pred CcccCCccCCCcccc--CCCCCCHHHHHHHHHHHHHHHCCCEEEecCCccCHHHH-HhhCC--CCCceEEEcCCCchhhh
Confidence 44446666664 311 11222345677888899999999999998877766544 32332 244 5777776 44567
Q ss_pred eeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCC--------h-hHHHHHHHHHH
Q 022115 144 ALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------V-TAEAELISSII 214 (302)
Q Consensus 144 ~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~--------~-~aDaEvi~l~~ 214 (302)
+||+.+.+.+.+.++.|.+....|+|+|.+|+|||.+....++ .|+.|+++=+.|... . ..-.++-.++.
T Consensus 548 vLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le 626 (795)
T 2rhq_B 548 TLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVD 626 (795)
T ss_dssp EECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHH
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHH
Confidence 9999999999999998755445799999999999964221123 899999998888531 0 12346667778
Q ss_pred HHHHHcCC
Q 022115 215 TFFKRIGI 222 (302)
Q Consensus 215 eil~~lgl 222 (302)
.+++.+|+
T Consensus 627 ~ll~~lG~ 634 (795)
T 2rhq_B 627 RVAEKLNL 634 (795)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 88888886
No 72
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=97.82 E-value=3.1e-05 Score=72.58 Aligned_cols=139 Identities=15% Similarity=0.210 Sum_probs=92.1
Q ss_pred cccccCCCCCCccCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchH-Hhhhh---hcccc--ccccEEEeeCCCCe
Q 022115 69 QKIDVNPPKGTRDFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEA-LFIRK---AGEEI--RDQLYCFEDRGNRR 142 (302)
Q Consensus 69 ~~~~~~~p~G~~d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d-~~~~~---~g~~~--~~~~~~f~D~~G~~ 142 (302)
..++..+|.+-... ....-...+.+.++++|...||.++.+|.++... .|..- ..+.. ...+|.+. ..
T Consensus 90 e~id~TLP~~~~~~--G~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~----e~ 163 (327)
T 3pco_A 90 ETIDVSLPGRRIEN--GGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFD----TT 163 (327)
T ss_dssp TCCCTTSCCCCCCC--CCCCHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSS----SS
T ss_pred CCCCCcCCCCCCCC--CCCCHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeC----CC
Confidence 34666666543222 2234567788899999999999999999986532 12110 01100 02244442 45
Q ss_pred EeeCCCChHHHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCChhHHHHHHHHHHHHHHHc
Q 022115 143 VALRPELTPSLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAVTAEAELISSIITFFKRI 220 (302)
Q Consensus 143 l~LRpDlT~~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~l 220 (302)
.+||..+++..+|.+..+ ..|+|+|.+|+|||.+ ....+..+|+|+..-++|.+... .++-.++..+++.+
T Consensus 164 ~vLRThtsp~~lr~l~~~----~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~v~f--~dLKg~Le~~l~~l 234 (327)
T 3pco_A 164 RLLRTQTSGVQIRTMKAQ----QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTNISF--TNLKGTLHDFLRNF 234 (327)
T ss_dssp CEECSCTHHHHHHHHTTC----CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETTCCH--HHHHHHHHHHHHHH
T ss_pred ceecccCCHHHHHHHHhC----CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCCCCH--HHHHHHHHHHHHHH
Confidence 799999999999988663 3599999999999987 34557778999977677754333 45555666666665
No 73
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=97.52 E-value=0.00049 Score=71.46 Aligned_cols=144 Identities=19% Similarity=0.172 Sum_probs=99.8
Q ss_pred cccccccCCCCCCc-cCChHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEe
Q 022115 67 DLQKIDVNPPKGTR-DFPPEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVA 144 (302)
Q Consensus 67 ~~~~~~~~~p~G~~-d~lp~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~ 144 (302)
+-++++..+|.+.. ...+ .....+++.+.+++.+...||.|+.|-.|...+.+ ...+. ..+.+++.++ +...-+
T Consensus 468 GydnIp~~~p~~~~~~~~~-~~~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~-~~l~~--~~~~v~L~NPis~d~sv 543 (785)
T 1b7y_B 468 GYETIPLALPAFFPAPDNR-GVEAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDA-RRFRL--DPPRLLLLNPLAPEKAA 543 (785)
T ss_dssp CGGGSCCCCCCCCCCGGGS-STTHHHHHHHHHHHHHHHHTCEECCCCSEECTTHH-HHTTC--CCCSCEESSCSSTTSSE
T ss_pred CcccCCccCCCcccccccc-cCCHHHHHHHHHHHHHHHCCCEEEecCcccCHHHH-HhcCC--CCCeEEEcCCCchhhhh
Confidence 34446666775510 0111 22335667888899999999999988777665544 22321 2445677766 556678
Q ss_pred eCCCChHHHHHHHHHhCCCC-CCCeEEEEEccccccCCCCCCCccceeEeeEEEeccCCh--------hHHHHHHHHHHH
Q 022115 145 LRPELTPSLARLVIQKGKSV-SLPLKWFAVGQCWRYERMTRGRRREHYQWNMDIIGVPAV--------TAEAELISSIIT 215 (302)
Q Consensus 145 LRpDlT~~iaR~~a~~~~~~-~~P~K~~yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~~--------~aDaEvi~l~~e 215 (302)
||+.+.+.+.+.++.|.+.. ..|+|+|.+|+||| + .|+.|+++=+.|.... ..-.++-.++..
T Consensus 544 LRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ 615 (785)
T 1b7y_B 544 LRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEA 615 (785)
T ss_dssp ECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHH
Confidence 99999999999999875433 46999999999999 2 7999999999996410 123466677778
Q ss_pred HHHHcCC
Q 022115 216 FFKRIGI 222 (302)
Q Consensus 216 il~~lgl 222 (302)
++..+|+
T Consensus 616 ll~~lgi 622 (785)
T 1b7y_B 616 LFARLGL 622 (785)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 8888776
No 74
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=97.41 E-value=0.0011 Score=63.90 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHc--------CCeeecC-CcccchH-Hhhhhh---cccc--ccccEEEeeCCCCeEeeCCCChH
Q 022115 87 MRLRNWLFHNFQEVSRLF--------GFEEVDF-PVLESEA-LFIRKA---GEEI--RDQLYCFEDRGNRRVALRPELTP 151 (302)
Q Consensus 87 ~~~~~~i~~~l~~vf~~~--------Gy~eI~t-P~le~~d-~~~~~~---g~~~--~~~~~~f~D~~G~~l~LRpDlT~ 151 (302)
..-...+.+.++++|... ||.++.+ |.++... .|..-. .+.. ....|.+. ...+||..+++
T Consensus 47 ~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~----~~~vLRThts~ 122 (415)
T 3cmq_A 47 HHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLN----RTHMLRAHTSA 122 (415)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSS----SSEEECSSGGG
T ss_pred CCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEec----CCeEEcCCCcH
Confidence 344566666777777665 9999998 6666543 332210 1111 13445452 34899999999
Q ss_pred HHHHHHHHhCCCCCCCeEEEEEccccccCCCCCCCccceeEe-eEEEe
Q 022115 152 SLARLVIQKGKSVSLPLKWFAVGQCWRYERMTRGRRREHYQW-NMDII 198 (302)
Q Consensus 152 ~iaR~~a~~~~~~~~P~K~~yig~VfR~e~~~~gr~rEf~Q~-g~Eii 198 (302)
..+|.+..+ .| |++.+|.|||++.....+..+|+|. |+-++
T Consensus 123 ~~~~~l~~~-----~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 123 HQWDLLHAG-----LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp GHHHHHHTT-----CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEEE
T ss_pred HHHHHHHHC-----CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEEE
Confidence 999998764 25 9999999999987677788899988 56554
No 75
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=96.43 E-value=0.013 Score=60.87 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeC-CCCeEeeCCCChHHHHHHHHHhCCCCCCCeEEE
Q 022115 93 LFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDR-GNRRVALRPELTPSLARLVIQKGKSVSLPLKWF 171 (302)
Q Consensus 93 i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~-~G~~l~LRpDlT~~iaR~~a~~~~~~~~P~K~~ 171 (302)
..+.+++.+...||.|+.|-+|...+.+.. .+. ..+..++.++ +...=+||+.+-+.+...++.|.+....++|+|
T Consensus 494 ~~~~~r~~l~~~G~~Evitysf~~~~~~~~-~~~--~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lF 570 (795)
T 3pco_B 494 SLKRVKTLLNDKGYQEVITYSFVDPKVQQM-IHP--GVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIF 570 (795)
T ss_dssp CHHHHHHHHHHTTCEECCCCSEECHHHHHH-HSS--SCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEE
T ss_pred HHHHHHHHHHHCCCeeeeccCcCCHHHHHh-hCC--CCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEE
Confidence 455678888889999999988887665432 232 2355677776 566779999999999999998876556689999
Q ss_pred EEccccccCCCCCCCccceeEeeEEEeccCC--------hhHH-HHHHHHHHHHHHHcCC
Q 022115 172 AVGQCWRYERMTRGRRREHYQWNMDIIGVPA--------VTAE-AELISSIITFFKRIGI 222 (302)
Q Consensus 172 yig~VfR~e~~~~gr~rEf~Q~g~EiiG~~~--------~~aD-aEvi~l~~eil~~lgl 222 (302)
.+|+||..+......++|...+++=+.|... ...| .++-.++..+|..+|+
T Consensus 571 EiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~ 630 (795)
T 3pco_B 571 ESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGK 630 (795)
T ss_dssp EEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSC
T ss_pred EeeeEEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 9999998754323356788888888888421 1223 3566677778888886
No 76
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=70.69 E-value=7.3 Score=30.75 Aligned_cols=49 Identities=10% Similarity=0.154 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHHhhhc----CCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIEK----LPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~k----~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
++.+++.+..++.+++++ ++-+++++.|.+.|++.+.++.|.++.+..+
T Consensus 27 it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~ 79 (121)
T 3fia_A 27 ITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIWALADMNN 79 (121)
T ss_dssp CCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCC
Confidence 677777777777777753 6789999999999999999999999998765
No 77
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=68.27 E-value=12 Score=27.18 Aligned_cols=49 Identities=10% Similarity=0.068 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++++...+..+.+.++ +++.++++..|..+|++.+.++.+.......|
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~ 57 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKD 57 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 44555666666666554 47899999999999999998998888876654
No 78
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=60.08 E-value=18 Score=27.27 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=37.1
Q ss_pred CChhhHHHHHHHHHhhh----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIE----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++++...+..+.+.++ +++.++++..|..+|++.+.++.|.+..+..|
T Consensus 9 ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~ 61 (106)
T 1eh2_A 9 VKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDH 61 (106)
T ss_dssp SCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCC
Confidence 45555566656555444 47889999999999999999999998887754
No 79
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.91 E-value=14 Score=26.59 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 247 PEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 247 ~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
++++...+.++.+.++ +++.++++..|...|++.+.++.+.......|
T Consensus 4 s~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~ 56 (92)
T 1fi6_A 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDK 56 (92)
T ss_dssp CHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 4555566666665554 36788888888888888888888877776544
No 80
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=54.39 E-value=22 Score=25.16 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 247 PEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 247 ~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++....+..+...++ +++.+++...|..+|++.+.++.+...+...|
T Consensus 22 ~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~ 74 (91)
T 2pmy_A 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADR 74 (91)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCC
Confidence 3445555666665554 46889999999999999988888888876654
No 81
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.99 E-value=28 Score=25.70 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=39.7
Q ss_pred CCCChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCC--CCHHHHHHHHHHhcCCC
Q 022115 244 HSIPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAG--MSEAAIEELLRVLSIKS 294 (302)
Q Consensus 244 ~gl~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~g--ls~~~~~~l~~l~~~~g 294 (302)
..+++++..++.++.+.++ .++.++++..|..+| ++.+.++.+.+-+...|
T Consensus 28 ~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~ 85 (100)
T 2lv7_A 28 VDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDG 85 (100)
T ss_dssp CCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSC
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCC
Confidence 4678888888888887775 479999999999876 56667888887776654
No 82
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=46.95 E-value=1.7e+02 Score=26.81 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHH-HHcCCeeecCCcccchHH-hhhh-hcccccccc--EEEeeCCCCeEeeCCCChHHHHHHHHHhCC
Q 022115 88 RLRNWLFHNFQEVS-RLFGFEEVDFPVLESEAL-FIRK-AGEEIRDQL--YCFEDRGNRRVALRPELTPSLARLVIQKGK 162 (302)
Q Consensus 88 ~~~~~i~~~l~~vf-~~~Gy~eI~tP~le~~d~-~~~~-~g~~~~~~~--~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~ 162 (302)
.....|.+.+.+.+ +..|+.+|.+|+|..... ++.. +|. ++- |.+.|-.|..+-+---+ +-.-|+...+..
T Consensus 10 ~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~---ErpV~f~i~~~~~~~~eivhSL-aKWKR~aL~~y~ 85 (330)
T 12as_A 10 RQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGA---EKAVQVKVKALPDAQFEVVHSL-AKWKRQTLGQHD 85 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTT---CCCCEECCSSSTTCCEEECSCC-TTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCc---eecceEecccCCCceEEEeeeH-HHHHHHHHHhCC
Confidence 33444444443222 389999999999987532 2111 121 222 33333334433222111 113344444432
Q ss_pred CCCCCeEEEEEccccccCCC--CCCCccceeEeeEEEeccCC
Q 022115 163 SVSLPLKWFAVGQCWRYERM--TRGRRREHYQWNMDIIGVPA 202 (302)
Q Consensus 163 ~~~~P~K~~yig~VfR~e~~--~~gr~rEf~Q~g~EiiG~~~ 202 (302)
...--++|.--+..|.+.. ..-|.-++.|||.|.+....
T Consensus 86 -f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~ 126 (330)
T 12as_A 86 -FSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDG 126 (330)
T ss_dssp -CCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTT
T ss_pred -CCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEecccc
Confidence 2234689998888887642 33467899999999998744
No 83
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=45.45 E-value=39 Score=25.28 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=36.5
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++++..++..+.+.++ +++.++++..|...+++.+.++.+...+...|
T Consensus 8 ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~~~D~d~ 61 (111)
T 2kgr_A 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWNLSDIDQ 61 (111)
T ss_dssp SCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHHHHCCCC
Confidence 55666667777776665 36788899988888888888888888776654
No 84
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=44.52 E-value=37 Score=24.85 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 263 KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 263 k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++.++++..|...|++.+.++.+.+.....|
T Consensus 27 ~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~ 58 (99)
T 1qjt_A 27 RVLALDAAAFLKKSGLPDLILGKIWDLADTDG 58 (99)
T ss_dssp CCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSS
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCC
Confidence 46777777777777777777777777665543
No 85
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=36.37 E-value=38 Score=24.32 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHHHHHHHHcCCCCCceEEEeCChH
Q 022115 200 VPAVTAEAELISSIITFFKRIGITASDVGFRISSRK 235 (302)
Q Consensus 200 ~~~~~aDaEvi~l~~eil~~lgl~~~~~~I~igh~~ 235 (302)
....+.-.|++.++...|+++|.. ++.+++|...
T Consensus 56 aendeqakelleliarllqklgyk--dinvrvngte 89 (96)
T 2jvf_A 56 AENDEQAKELLELIARLLQKLGYK--DINVRVNGTE 89 (96)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCS--EEEEEEETTE
T ss_pred ecChHHHHHHHHHHHHHHHHhCCC--ceEEEEcCEE
Confidence 344445579999999999999987 7888887654
No 86
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=36.09 E-value=1.1e+02 Score=21.50 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 236 VLQEVLRCHSIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 236 il~~il~~~gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
-+...+..+|++..+ ..++.++..-...+..++ -+.+|++...+...++-+.-.|
T Consensus 8 ~~~~~l~~~~l~~~~-~~il~~l~~~~~~s~~el---a~~l~is~~tv~~~l~~L~~~g 62 (109)
T 1sfx_A 8 ELVKALEKLSFKPSD-VRIYSLLLERGGMRVSEI---ARELDLSARFVRDRLKVLLKRG 62 (109)
T ss_dssp HHHHHHHHTCCCHHH-HHHHHHHHHHCCBCHHHH---HHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHH-HHHHHHHHHcCCCCHHHH---HHHHCCCHHHHHHHHHHHHHCC
Confidence 356677788887754 445555544334454443 4455888888888777776666
No 87
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=35.25 E-value=90 Score=24.31 Aligned_cols=57 Identities=5% Similarity=-0.042 Sum_probs=37.5
Q ss_pred HHHHHHhCCCChhhHHHHHHHHHhhh---cCCHHHHHHHHHHCC---CCHHHHHHHHHHhcCC
Q 022115 237 LQEVLRCHSIPEHLFGKVCIIIDKIE---KLPLDVIKNDLKSAG---MSEAAIEELLRVLSIK 293 (302)
Q Consensus 237 l~~il~~~gl~~~~~~~v~~~ldkl~---k~~~~~v~~~L~~~g---ls~~~~~~l~~l~~~~ 293 (302)
++.++...++++++-..+...+++.+ +++.+++...+..+| .+...+..+...+...
T Consensus 6 l~~l~~~~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d 68 (183)
T 1s6c_A 6 LEQLEAQTNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT 68 (183)
T ss_dssp CHHHHHHSSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCC
Confidence 45566777777777777777776642 467777777777654 4555666666666544
No 88
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=35.08 E-value=14 Score=28.02 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=36.0
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++++...+..+.+.++ +++.++++..|...|++.+.++.+.+.....|
T Consensus 16 ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~ 69 (110)
T 1iq3_A 16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWELSDADC 69 (110)
T ss_dssp CSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCC
Confidence 45555666666665554 46889999999888998888888888877654
No 89
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=34.80 E-value=56 Score=25.86 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCC
Q 022115 248 EHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIK 293 (302)
Q Consensus 248 ~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~ 293 (302)
+++...+.++...++ .++.+++...|..+|+++..++.+...+...
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~~~D~d 85 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDIN 85 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 334444555554443 3566677777777776666666665555443
No 90
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=34.66 E-value=1e+02 Score=20.66 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHCCCCHHHHHHHH
Q 022115 263 KLPLDVIKNDLKSAGMSEAAIEELL 287 (302)
Q Consensus 263 k~~~~~v~~~L~~~gls~~~~~~l~ 287 (302)
..+.++=..+|++.||+.+.++..+
T Consensus 27 ~sp~~~K~~FL~sKGLt~~EI~~Al 51 (54)
T 3ff5_A 27 QSPLATRRAFLKKKGLTDEEIDLAF 51 (54)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4678888899999999999887754
No 91
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=32.60 E-value=97 Score=20.80 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=34.8
Q ss_pred CCChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCC--CCHHHHHHHHHHhcCC
Q 022115 245 SIPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAG--MSEAAIEELLRVLSIK 293 (302)
Q Consensus 245 gl~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~g--ls~~~~~~l~~l~~~~ 293 (302)
.++++....+..+...++ .++.++++..|..+| ++.+.++.+...+...
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 62 (85)
T 2ktg_A 7 VLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKD 62 (85)
T ss_dssp SSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHHHHSSS
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC
Confidence 356666666777776654 367889999998776 5677778877777554
No 92
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=31.85 E-value=79 Score=25.12 Aligned_cols=32 Identities=6% Similarity=0.251 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 263 KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 263 k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+++.++++..|...|++.+.++.|++..+..+
T Consensus 66 ~Is~~El~~~l~~~gl~~~el~~I~~~~D~d~ 97 (139)
T 2jq6_A 66 KITGANAKKEMVKSKLPNTVLGKIWKLADVDK 97 (139)
T ss_dssp EEEHHHHHHHHHHTTCCHHHHHHHHHHHCSSC
T ss_pred eECHHHHHHHHHHhCcCHHHHHHHHHHhCCCC
Confidence 46788899999889999998999988887654
No 93
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=31.45 E-value=34 Score=26.74 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=23.1
Q ss_pred CCCChhhHHHHHHHHHhhhc-CCHHHHHHHHHH
Q 022115 244 HSIPEHLFGKVCIIIDKIEK-LPLDVIKNDLKS 275 (302)
Q Consensus 244 ~gl~~~~~~~v~~~ldkl~k-~~~~~v~~~L~~ 275 (302)
..+++....++|.++|+-+- ++|.++.+.+..
T Consensus 22 ~~L~e~~L~~Lc~lLD~~~~~kGWrkLAe~l~~ 54 (117)
T 2g7r_A 22 NRLREPLLRRLSELLDQAPEGRGWRRLAELAGS 54 (117)
T ss_dssp GGSCHHHHHHHHHHHTCC----CHHHHHHHCC-
T ss_pred hhCCHHHHHHHHHHHcCCCcCCCHHHHHHHhcc
Confidence 34788899999999997653 789888777653
No 94
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=31.22 E-value=1e+02 Score=20.78 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=26.0
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCC-CCHHHHHHHHHHhcCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAG-MSEAAIEELLRVLSIK 293 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~g-ls~~~~~~l~~l~~~~ 293 (302)
++++....+..+....+ .++.++++..|..+| ++.+.++.+...+...
T Consensus 5 ~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~ 58 (86)
T 2opo_A 5 DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTD 58 (86)
T ss_dssp -CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTT
T ss_pred CCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCC
Confidence 34444455555554443 356677777776655 5555566665555443
No 95
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=31.21 E-value=1.3e+02 Score=28.72 Aligned_cols=131 Identities=12% Similarity=0.107 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCeeecCCcccch-H--HhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 91 NWLFHNFQEVSRLFGFEEVDFPVLESE-A--LFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 91 ~~i~~~l~~vf~~~Gy~eI~tP~le~~-d--~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
..|++.+.+.|+++|...|....+-+. | ++...+| |. ||--+..- ...+..
T Consensus 5 ~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAG------M~------------------~FKp~flG--~~~p~~ 58 (441)
T 3hy0_A 5 AEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAG------MN------------------QFKDVFLG--LDKRNY 58 (441)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSG------GG------------------GGHHHHHT--SSCCSC
T ss_pred HHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeeccc------ch------------------hhhhhhcC--CCCCCC
Confidence 578999999999999999977555453 2 2211112 22 22222222 112223
Q ss_pred eEEEEEcccccc-----CCCCCCCccceeEeeEEEeccCCh--hHHHHHHHHHHHHHH---HcCCCCCceEEE--eCChH
Q 022115 168 LKWFAVGQCWRY-----ERMTRGRRREHYQWNMDIIGVPAV--TAEAELISSIITFFK---RIGITASDVGFR--ISSRK 235 (302)
Q Consensus 168 ~K~~yig~VfR~-----e~~~~gr~rEf~Q~g~EiiG~~~~--~aDaEvi~l~~eil~---~lgl~~~~~~I~--igh~~ 235 (302)
-|...+++|-|- +-...|+. -.+..-||.+|.-+. .=-.|.|..+++.|. .+|+..+.+.+. .++-.
T Consensus 59 ~r~~~sQkCiR~gGKHnDlenVG~t-~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~E 137 (441)
T 3hy0_A 59 SRATTSQRCVRAGGKHNDLENVGYT-ARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDE 137 (441)
T ss_dssp SEEEEEEEEECEETTEECGGGBTTB-SSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHH
T ss_pred CCccccccceecCCCCCCHHhhCCC-CccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHH
Confidence 588999999995 32223432 113345555554221 112488999999996 389986666444 34433
Q ss_pred HHHHHHHh-CCCChh
Q 022115 236 VLQEVLRC-HSIPEH 249 (302)
Q Consensus 236 il~~il~~-~gl~~~ 249 (302)
- ..++.. +|+|++
T Consensus 138 a-~~iW~~~~Gvp~~ 151 (441)
T 3hy0_A 138 A-YEIWEKEVGIPRE 151 (441)
T ss_dssp H-HHHHHHTTCCCGG
T ss_pred H-HHHHHHccCCCHH
Confidence 3 334443 788875
No 96
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=31.21 E-value=1.5e+02 Score=23.06 Aligned_cols=60 Identities=15% Similarity=0.034 Sum_probs=35.1
Q ss_pred hHHHHHHHHhCCCChhhHHHHHHHHHhh-h--cCCHHHHHHHHHHC---CCCHHHHHHHHHHhcCC
Q 022115 234 RKVLQEVLRCHSIPEHLFGKVCIIIDKI-E--KLPLDVIKNDLKSA---GMSEAAIEELLRVLSIK 293 (302)
Q Consensus 234 ~~il~~il~~~gl~~~~~~~v~~~ldkl-~--k~~~~~v~~~L~~~---gls~~~~~~l~~l~~~~ 293 (302)
...++.+....+++.+.-..+...+|+. . +++.+++...|..+ |.+...++.+...+...
T Consensus 10 ~~~l~~l~~~~~~~~~~i~~~f~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d 75 (190)
T 1g8i_A 10 PEVVEELTRKTYFTEKEVQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDEN 75 (190)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcC
Confidence 3445566666666666666666666654 1 45666776666654 55555555555555443
No 97
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=30.56 E-value=32 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=26.1
Q ss_pred CCChhhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHH
Q 022115 245 SIPEHLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELL 287 (302)
Q Consensus 245 gl~~~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~ 287 (302)
.+|...+++|++++| -.+|.. +-+++|++...++.+.
T Consensus 6 ~lp~~~r~~l~~lL~---g~dW~~---LA~~Lg~~~~~I~~~~ 42 (85)
T 1ngr_A 6 SLPLTKREEVEKLLN---GDTWRH---LAGELGYQPEHIDSFT 42 (85)
T ss_dssp TSCSTTTHHHHHHSC---TTHHHH---HHHHTTCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHhC---cCCHHH---HHHHcCCCHHHHHHHH
Confidence 578888999999988 456733 3456788876665543
No 98
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=29.98 E-value=77 Score=23.23 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHH
Q 022115 265 PLDVIKNDLKSAGMSEAAIEELL 287 (302)
Q Consensus 265 ~~~~v~~~L~~~gls~~~~~~l~ 287 (302)
+|.+++++..++|+++..++.|.
T Consensus 11 ~~~~wK~~~R~LGlse~~Id~I~ 33 (86)
T 3oq9_A 11 TIQEAKKFARENNIKEGKIDEIM 33 (86)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHhHHHHHH
Confidence 56666666666666666665554
No 99
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=29.55 E-value=48 Score=30.15 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=29.8
Q ss_pred ChHHHHHHHHhCCCChhhHHHHHHHHHhh---hcCCHHHH---HHHHHHCCCCHHHHHHH-HHHhc
Q 022115 233 SRKVLQEVLRCHSIPEHLFGKVCIIIDKI---EKLPLDVI---KNDLKSAGMSEAAIEEL-LRVLS 291 (302)
Q Consensus 233 h~~il~~il~~~gl~~~~~~~v~~~ldkl---~k~~~~~v---~~~L~~~gls~~~~~~l-~~l~~ 291 (302)
+.+-+-++|..+|+++.+-. +++.+- -..+.+.+ -++|.++|++.+.+..+ ...|.
T Consensus 50 ~~~~vl~fL~~~G~s~~~i~---~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~ 112 (343)
T 3mva_O 50 NEQDLKMFLLSKGASKEVIA---SIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPE 112 (343)
T ss_dssp CHHHHHHHHHHTTCCHHHHH---HHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSH
T ss_pred cHHHHHHHHHHcCCCHHHHH---HHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCH
Confidence 33444466777888775433 444332 11233333 35667788887765444 34443
No 100
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=29.33 E-value=2e+02 Score=23.70 Aligned_cols=59 Identities=5% Similarity=-0.077 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCChhhHHHHHHHHHhhh---cCCHHHHHHHHHHCC---CCHHHHHHHHHHhcCCC
Q 022115 236 VLQEVLRCHSIPEHLFGKVCIIIDKIE---KLPLDVIKNDLKSAG---MSEAAIEELLRVLSIKS 294 (302)
Q Consensus 236 il~~il~~~gl~~~~~~~v~~~ldkl~---k~~~~~v~~~L~~~g---ls~~~~~~l~~l~~~~g 294 (302)
-++.++...++++++-..+.+.+++.+ +++.+++...+..+| .+...+..+.+.+...|
T Consensus 38 ~l~~l~~~~~~s~~ei~~l~~~Fd~~d~~G~I~~~E~~~~l~~l~~~~~~~~~~~~~f~~~D~d~ 102 (224)
T 1s1e_A 38 GLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQ 102 (224)
T ss_dssp CHHHHHHHSSCCHHHHHHHHHHHHHHCTTSCBCHHHHHHHHHTTCTTSCCHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHhcCCC
Confidence 356777888888888888888887652 578888888888765 45666777777765543
No 101
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=29.02 E-value=1.5e+02 Score=26.51 Aligned_cols=55 Identities=20% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCeEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 165 SLPLKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 165 ~~P~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
+.|.+..|+.++.|......| |.-.++|.-+-+= +++. .+-.+..++|+.+||..
T Consensus 57 pepw~~AYVqPsRRP~DGRYGeNPNRLq~y~QfQVilK--PsP~---niQeLYL~SL~alGid~ 115 (298)
T 1j5w_A 57 KGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIK--PSPE---NSQELYLESLEYLGINL 115 (298)
T ss_dssp SSCEEEEEEEEEECCC-----CCTTCCSEEEEEEEEEE--SCCS---SHHHHHHHHHHHTTCCT
T ss_pred CCcceeeeeccCCCCCCCCcCCCchhhhhheeeEEEEC--CCCc---cHHHHHHHHHHHhCCCc
Confidence 469999999999997644333 4557788776443 3332 35667889999999865
No 102
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.08 E-value=1.8e+02 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHCCCCHHHHHHH
Q 022115 264 LPLDVIKNDLKSAGMSEAAIEEL 286 (302)
Q Consensus 264 ~~~~~v~~~L~~~gls~~~~~~l 286 (302)
.+...|+.+|...|++.+.++..
T Consensus 80 ~G~~~I~~eL~~KGI~~~~i~~a 102 (159)
T 3c1d_A 80 YGPARIRQELNQKGISREATEKA 102 (159)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCHHHHHHH
Confidence 34555555555555555555443
No 103
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=27.90 E-value=1.5e+02 Score=26.72 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCCCC
Q 022115 88 RLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSLP 167 (302)
Q Consensus 88 ~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~~P 167 (302)
...+.+.-.|.+.-...|+..+.+=-+|- ..|.. . ...+.| . -.+.|
T Consensus 25 ~~fQ~iIl~Lq~fWa~qGC~i~QPyD~Ev------GAGT~-h--------------------PaTfLR---a---lGpeP 71 (311)
T 3rf1_A 25 MTFSQMILNLQNYWQEQGCAIMQPYDMPA------GAGTF-H--------------------PATFLR---S---LGKKP 71 (311)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCSSCC------SSGGG-S--------------------HHHHTT---T---SSSSC
T ss_pred CcHHHHHHHHHHHHHHCCCEEECCccccc------cCCCC-C--------------------HHHHHH---h---cCCCc
Confidence 34556677777777888887766544432 11210 0 011222 1 13569
Q ss_pred eEEEEEccccccCCCCCC----CccceeEeeEEEeccCChhHHHHHHHHHHHHHHHcCCCC
Q 022115 168 LKWFAVGQCWRYERMTRG----RRREHYQWNMDIIGVPAVTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 168 ~K~~yig~VfR~e~~~~g----r~rEf~Q~g~EiiG~~~~~aDaEvi~l~~eil~~lgl~~ 224 (302)
.+..|+.++.|......| |.-.++|.-+-+ .+++. .+-.+..++|+.+||..
T Consensus 72 w~~AYVqPsRRP~DGRYGeNPNRLq~yyQfQVil--KPsP~---niQeLYL~SL~alGId~ 127 (311)
T 3rf1_A 72 WAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLI--KPSPD---NIQELYLKSLENLGFDL 127 (311)
T ss_dssp EEEEEEEEEECGGGCCTTCCSSCCSEEEEEEEEE--ESCCT---THHHHHHHHHHHTTCCG
T ss_pred ceeeeeccCCCCCCCCcCCCchhhhhheeeEEEE--cCCCc---cHHHHHHHHHHHhCCCc
Confidence 999999999997644434 445678877644 34442 45678899999999864
No 104
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=27.29 E-value=68 Score=23.05 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhhhcCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 249 HLFGKVCIIIDKIEKLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 249 ~~~~~v~~~ldkl~k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+.++.++++++.+..-......+.-.++|++...+++++--+.-+|
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG 57 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKED 57 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3456666677666322222345566788898888887766555444
No 105
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=26.74 E-value=1.5e+02 Score=20.14 Aligned_cols=49 Identities=6% Similarity=0.251 Sum_probs=34.2
Q ss_pred CChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCC--CCHHHHHHHHHHhcCCC
Q 022115 246 IPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAG--MSEAAIEELLRVLSIKS 294 (302)
Q Consensus 246 l~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~g--ls~~~~~~l~~l~~~~g 294 (302)
++++....+..+...++ +++.++++..|..+| ++.+.++.+...+...+
T Consensus 14 l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~ 69 (90)
T 1avs_A 14 LSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69 (90)
T ss_dssp BCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCC
Confidence 45555666666665554 478999999998876 56777888877776543
No 106
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=26.63 E-value=2.4e+02 Score=22.32 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCChhhHHHHHHHHHhhh---cCCHHHHHHHHHHCC---CCHHHHHHHHHHhcCC
Q 022115 235 KVLQEVLRCHSIPEHLFGKVCIIIDKIE---KLPLDVIKNDLKSAG---MSEAAIEELLRVLSIK 293 (302)
Q Consensus 235 ~il~~il~~~gl~~~~~~~v~~~ldkl~---k~~~~~v~~~L~~~g---ls~~~~~~l~~l~~~~ 293 (302)
.-+..++..+++++++-..+...+|+-+ +++.+++...|..++ .+.+.+..+...+...
T Consensus 19 ~el~~~~~~~~~~~~~i~~~f~~~d~~~~~G~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d 83 (207)
T 2d8n_A 19 EILEELQLNTKFSEEELCSWYQSFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSN 83 (207)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHCTTSEEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCC
Confidence 3455666666666666666666665431 456667776666553 3444455555555443
No 107
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=25.96 E-value=71 Score=32.73 Aligned_cols=111 Identities=11% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHcCCeeecCCcccch---HHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHHHHHHhCCCCC
Q 022115 89 LRNWLFHNFQEVSRLFGFEEVDFPVLESE---ALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVS 165 (302)
Q Consensus 89 ~~~~i~~~l~~vf~~~Gy~eI~tP~le~~---d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR~~a~~~~~~~ 165 (302)
....|++.+.+.|+++|+..+.+..+-+. +++...+| |..|..- +| .+...+
T Consensus 61 ~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~ag------m~~fkp~----------~~---------~g~~~p 115 (739)
T 2ztg_A 61 ELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIAS------IADFQPF----------VT---------SGVAPP 115 (739)
T ss_dssp CHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSG------GGGGTTT----------TT---------TSSSCC
T ss_pred CHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecC------hhhCcHh----------Hh---------CCCCCC
Confidence 35688899999999999999987666442 12211112 2222211 10 011223
Q ss_pred CCeEEEEEccccccCCC-CCCC---cccee-EeeEEEeccCC--hhHHHHHHHHHHHHHHHcCCCC
Q 022115 166 LPLKWFAVGQCWRYERM-TRGR---RREHY-QWNMDIIGVPA--VTAEAELISSIITFFKRIGITA 224 (302)
Q Consensus 166 ~P~K~~yig~VfR~e~~-~~gr---~rEf~-Q~g~EiiG~~~--~~aDaEvi~l~~eil~~lgl~~ 224 (302)
.+-+..++++|-|-... ..|+ .--|+ .+|=--||.++ ..=-.|.|.++++.|+.+|+..
T Consensus 116 ~~~~~~~~Q~ciR~~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l~~~g~~~ 181 (739)
T 2ztg_A 116 PANPLTISQPCIRLDDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKK 181 (739)
T ss_dssp SSSSEEEEEEEECGGGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHHHHHTCCG
T ss_pred CCCCcccccccccCcccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHHHHhCCCH
Confidence 46788999999996311 1232 22232 22444555221 1222589999999997799874
No 108
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=25.88 E-value=1.5e+02 Score=19.87 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=30.1
Q ss_pred CCChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCC--CCHHH---HHHHHHHhc
Q 022115 245 SIPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAG--MSEAA---IEELLRVLS 291 (302)
Q Consensus 245 gl~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~g--ls~~~---~~~l~~l~~ 291 (302)
.+++++...+..+.+.++ .++..+++..|..+| ++.+. ++.+..-+.
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~d 63 (86)
T 1j7q_A 7 ALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGPK 63 (86)
T ss_dssp CCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCSS
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 355555666666665554 478999999998887 45555 555554443
No 109
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=23.98 E-value=1.2e+02 Score=19.74 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=29.6
Q ss_pred ChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCC--CHHHHHHHHHHhcCC
Q 022115 247 PEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGM--SEAAIEELLRVLSIK 293 (302)
Q Consensus 247 ~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gl--s~~~~~~l~~l~~~~ 293 (302)
+++....+..+...++ .++.++++..|..+|. +.+.++.+...+...
T Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~ 55 (77)
T 2joj_A 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDRE 55 (77)
T ss_dssp CHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCC
Confidence 4445555666665554 3678888888877664 555666666666544
No 110
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=22.80 E-value=2.1e+02 Score=21.56 Aligned_cols=51 Identities=10% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCCChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHCCC--CHHHHHHHHHHhcCCC
Q 022115 244 HSIPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSAGM--SEAAIEELLRVLSIKS 294 (302)
Q Consensus 244 ~gl~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~gl--s~~~~~~l~~l~~~~g 294 (302)
.++++++...+..+...++ .++.+++...|..+|. +.+.++.+...+...|
T Consensus 20 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 77 (169)
T 3qrx_A 20 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDG 77 (169)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC
Confidence 4677777777777777664 4788999999987764 6667777777765543
No 111
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=22.63 E-value=1.9e+02 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.407 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHCC--CCHHHHHHHHHHhcC
Q 022115 264 LPLDVIKNDLKSAG--MSEAAIEELLRVLSI 292 (302)
Q Consensus 264 ~~~~~v~~~L~~~g--ls~~~~~~l~~l~~~ 292 (302)
++.++++..|..+| ++.+.++.+...+..
T Consensus 26 i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~ 56 (92)
T 2kn2_A 26 ISASELRHVMINLGEKLTDEEVEQMIKEADL 56 (92)
T ss_dssp ECHHHHHHHHHHTTCCCCHHHHHHHHHHHCS
T ss_pred EcHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 45566666665555 455555555554443
No 112
>3ezq_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} SCOP: a.77.1.2 PDB: 1ddf_A
Probab=22.31 E-value=1.6e+02 Score=22.72 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHCCCCHHHHHHHH
Q 022115 263 KLPLDVIKNDLKSAGMSEAAIEELL 287 (302)
Q Consensus 263 k~~~~~v~~~L~~~gls~~~~~~l~ 287 (302)
..+|..++++..++|+++..++.|.
T Consensus 17 ~m~~~~wK~laR~LGlse~~Id~I~ 41 (115)
T 3ezq_A 17 VMTLSQVKGFVRKNGVNEAKIDEIK 41 (115)
T ss_dssp TSCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HcCHHHHHHHHHHcCCCHhhHHHHH
Confidence 3478888888888888888777664
No 113
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=22.21 E-value=1.6e+02 Score=20.69 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHhCCCChhhHHHHHHHHHhhh-----cCCHHHHHHHHHHC---C--CCHHHHHHHHHHhcCCC
Q 022115 240 VLRCHSIPEHLFGKVCIIIDKIE-----KLPLDVIKNDLKSA---G--MSEAAIEELLRVLSIKS 294 (302)
Q Consensus 240 il~~~gl~~~~~~~v~~~ldkl~-----k~~~~~v~~~L~~~---g--ls~~~~~~l~~l~~~~g 294 (302)
++..+.++......+..+...++ .++.++++..|..+ | ++.+.++.+...+...+
T Consensus 30 f~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~d~~~ 94 (110)
T 1pva_A 30 FFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDG 94 (110)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHHHHCTTC
T ss_pred HHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCC
Confidence 33333444444555555555443 47899999999876 3 77888888888776543
No 114
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin; structural genomics, unknown function, PSI-2, protein struct initiative; 2.45A {Helicobacter pylori}
Probab=21.63 E-value=58 Score=28.46 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=62.4
Q ss_pred CCccCCh--HHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCChHHHHH
Q 022115 78 GTRDFPP--EDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLAR 155 (302)
Q Consensus 78 G~~d~lp--~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDlT~~iaR 155 (302)
-+.|-+| ...+....+...+.++|++.||..+.. ...+-+. ....+++|..+|.+|. +.|++|.-
T Consensus 47 q~sdNi~k~Y~~kF~~al~~qIq~il~krGY~v~~~---~d~d~Lt----~~~Kkk~ylvl~~~G~-I~ileD~k----- 113 (236)
T 3bgh_A 47 EINKVIPESYQKEFEKSLFLQLSSFLERKGYSVSQF---KDASEIP----QDIKEKALLVLRMDGN-VAILEDIV----- 113 (236)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHHTTTCEEEEE---SSGGGCC----HHHHHHCSEEEEEEEE-EEEEEEEE-----
T ss_pred eecccccHHHHHHHHHHHHHHHHHHHHhCCceEeec---CChhhCC----HHHhhceEEEEecccc-EEEecccc-----
Confidence 4455554 455788999999999999999999984 4433221 1124678989998874 55588875
Q ss_pred HHHHhCCCC-CCCeEEEEEccccccC-CCCCCCccceeEeeEEEecc
Q 022115 156 LVIQKGKSV-SLPLKWFAVGQCWRYE-RMTRGRRREHYQWNMDIIGV 200 (302)
Q Consensus 156 ~~a~~~~~~-~~P~K~~yig~VfR~e-~~~~gr~rEf~Q~g~EiiG~ 200 (302)
...... ..-.=.-..|.||=.- .|..|+ -+...++|+=+.
T Consensus 114 ---s~p~~t~~d~~vdqSsG~v~l~fiEP~Sg~--vih~F~idls~~ 155 (236)
T 3bgh_A 114 ---EESDALSEEKVIDMSSGYLNLNFVEPKSED--IIHSFGIDVSKI 155 (236)
T ss_dssp ---ECCCSSSCCEEEEEEEEEEEEEEECTTTCC--EEEEEEEECCSC
T ss_pred ---cCCCCCCcceeEEeecceEEEEEecCCCcc--hHhhhccccccc
Confidence 222111 1122333445554432 455554 456667665443
No 115
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=21.38 E-value=2.9e+02 Score=22.07 Aligned_cols=56 Identities=9% Similarity=0.129 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhC---CCChhhHHHHHHHHHhhh-cCCHHHHHHHHHHCCCCHHHHHHHHH
Q 022115 233 SRKVLQEVLRCH---SIPEHLFGKVCIIIDKIE-KLPLDVIKNDLKSAGMSEAAIEELLR 288 (302)
Q Consensus 233 h~~il~~il~~~---gl~~~~~~~v~~~ldkl~-k~~~~~v~~~L~~~gls~~~~~~l~~ 288 (302)
+..+++.+++.| |.=++.+-.-.-+-++.. ..+...|+..|...|++.+.++..+.
T Consensus 47 ~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~ 106 (162)
T 3dfg_A 47 EPEAAQAAVERLAGEGWQDDVRFAASVVRNRASSGYGPLHIRAELGTHGLDSDAVSAAMA 106 (162)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccHHHHHHHHHHcCCCHHHHHHHHH
No 116
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=21.34 E-value=2.5e+02 Score=21.76 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhh-----cCCHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 251 FGKVCIIIDKIE-----KLPLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 251 ~~~v~~~ldkl~-----k~~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
...+..++...+ .++.++++..+...|++.+.++.+...+...|
T Consensus 108 ~~~~~~~F~~~D~d~dG~I~~~E~~~~l~~~g~~~~~~~~~~~~~D~d~ 156 (191)
T 2ccm_A 108 TKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGG 156 (191)
T ss_dssp HHHHHHHHHHHCTTCSSBCCHHHHHHHHHTTTCCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Confidence 344444454443 58899999999988999888888888776553
No 117
>2i9i_A Hypothetical protein; PSI-2 structural genomics, protein structure initiative, NEW research center for structural genomics, nysgxrc; 1.80A {Helicobacter pylori} SCOP: c.51.6.1
Probab=21.24 E-value=78 Score=27.94 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=43.1
Q ss_pred CccCC-hHHHHHHHHHHHHHHHHHHHcCCeeecCCcccchHHhhhhhccccccccEEEeeCCCCeEeeCCCC
Q 022115 79 TRDFP-PEDMRLRNWLFHNFQEVSRLFGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPEL 149 (302)
Q Consensus 79 ~~d~l-p~~~~~~~~i~~~l~~vf~~~Gy~eI~tP~le~~d~~~~~~g~~~~~~~~~f~D~~G~~l~LRpDl 149 (302)
+.|-+ |...+....+...+.++|++.||..+. +...+-+.. ...+++|-.+|-+|. +.|++|.
T Consensus 58 ~sdNik~Y~~kF~~aL~~qIq~il~krGY~v~~---~~d~d~Lt~----~~Kkk~ylvl~~~G~-I~ileD~ 121 (254)
T 2i9i_A 58 VSDNLKPYIDKFQDALINQIQTIFEKRGYQVLR---FQDEKALNA----QDKRKIFSVLDLKGW-VGILEDL 121 (254)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHHHHTTCEEEE---ESSGGGSCH----HHHHHCSEEEEEEEE-EEEEEEE
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHhCCceEEe---cCChhhCCH----HHhhceEEEEeccCc-EEEeccc
Confidence 44433 345678889999999999999999985 444443321 124678888887774 4557764
No 118
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.77 E-value=59 Score=23.91 Aligned_cols=30 Identities=10% Similarity=-0.006 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 265 PLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 265 ~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+...+.++-+.+++|+..+...++.+.-+|
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G 44 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAMG 44 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 444556666788899998888888877777
No 119
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=20.40 E-value=64 Score=24.99 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=8.6
Q ss_pred HHHHHHCCCCHHHHHHH
Q 022115 270 KNDLKSAGMSEAAIEEL 286 (302)
Q Consensus 270 ~~~L~~~gls~~~~~~l 286 (302)
+++..++|+++..++.+
T Consensus 29 K~~aRkLGLse~~Id~I 45 (112)
T 1ich_A 29 KEFVKRLGLSDHEIDRL 45 (112)
T ss_dssp HHHHHHHTCCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHH
Confidence 44455555555555444
No 120
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.09 E-value=57 Score=23.33 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHhcCCC
Q 022115 265 PLDVIKNDLKSAGMSEAAIEELLRVLSIKS 294 (302)
Q Consensus 265 ~~~~v~~~L~~~gls~~~~~~l~~l~~~~g 294 (302)
+...+.++-+.+++|+..+..-++.+.-+|
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G 44 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLESMG 44 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 344455666778888888877777766555
Done!