Query 022116
Match_columns 302
No_of_seqs 291 out of 1005
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 14:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022116.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022116hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 5.7E-17 1.9E-21 134.4 6.8 83 103-185 19-110 (118)
2 1am9_A Srebp-1A, protein (ster 99.7 3E-17 1E-21 127.9 4.3 64 111-175 6-70 (82)
3 1an4_A Protein (upstream stimu 99.6 3.8E-16 1.3E-20 116.1 3.3 54 110-164 4-63 (65)
4 1a0a_A BHLH, protein (phosphat 99.6 1.7E-16 6E-21 118.4 1.4 54 112-165 3-62 (63)
5 4h10_B Circadian locomoter out 99.6 7.1E-16 2.4E-20 117.9 3.7 57 111-168 8-65 (71)
6 4h10_A ARYL hydrocarbon recept 99.5 4.9E-16 1.7E-20 119.2 0.5 53 109-162 7-63 (73)
7 1hlo_A Protein (transcription 99.5 9.1E-15 3.1E-19 113.0 4.2 62 112-174 13-76 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 1.2E-14 4.2E-19 112.8 4.6 62 112-174 3-66 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 5.2E-14 1.8E-18 111.1 4.8 60 112-172 7-69 (88)
10 3u5v_A Protein MAX, transcript 99.4 9.9E-14 3.4E-18 107.1 3.0 58 112-169 6-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 1.5E-12 5.2E-17 101.2 6.0 60 113-173 3-65 (80)
12 4f3l_A Mclock, circadian locom 99.0 1.2E-10 4.2E-15 109.8 5.3 54 110-164 11-65 (361)
13 1mdy_A Protein (MYOD BHLH doma 99.0 7.2E-11 2.5E-15 89.3 2.0 53 112-165 13-67 (68)
14 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 2.2E-10 7.4E-15 109.5 2.8 54 109-163 11-68 (387)
15 2ql2_B Neurod1, neurogenic dif 98.9 4.2E-10 1.4E-14 83.1 3.6 53 113-165 4-58 (60)
16 4ath_A MITF, microphthalmia-as 98.8 1.1E-09 3.6E-14 86.0 2.6 46 123-169 4-53 (83)
17 2lfh_A DNA-binding protein inh 98.4 5.8E-08 2E-12 73.5 1.6 46 116-162 19-67 (68)
18 4aya_A DNA-binding protein inh 97.8 2.8E-05 9.6E-10 62.5 6.0 48 119-166 33-82 (97)
19 2wt7_A Proto-oncogene protein 50.0 41 0.0014 24.0 5.8 41 119-173 1-41 (63)
20 3coq_A Regulatory protein GAL4 42.6 16 0.00056 26.7 2.8 27 154-180 44-70 (89)
21 2er8_A Regulatory protein Leu3 40.7 19 0.00066 25.5 2.9 21 154-174 48-68 (72)
22 1zme_C Proline utilization tra 38.7 12 0.00041 26.3 1.4 21 155-175 44-64 (70)
23 1pyi_A Protein (pyrimidine pat 35.3 59 0.002 24.1 5.0 24 154-177 47-70 (96)
24 1hwt_C Protein (heme activator 31.8 23 0.00079 25.5 2.1 21 154-174 57-77 (81)
25 2jee_A YIIU; FTSZ, septum, coi 30.7 47 0.0016 25.6 3.7 24 150-173 15-38 (81)
26 3muj_A Transcription factor CO 28.6 56 0.0019 27.5 4.1 35 125-160 95-133 (138)
27 1dh3_A Transcription factor CR 26.3 48 0.0017 23.2 2.9 20 155-174 22-41 (55)
28 1g70_B RSG-1.2 peptide; peptid 22.5 42 0.0014 20.3 1.6 11 115-125 9-19 (26)
29 1gd2_E Transcription factor PA 21.7 63 0.0022 24.0 2.9 15 155-169 29-43 (70)
30 2jqq_A Conserved oligomeric go 21.6 46 0.0016 29.6 2.4 46 120-167 50-95 (204)
31 2wuj_A Septum site-determining 21.5 96 0.0033 21.7 3.7 28 148-175 27-54 (57)
32 1p3q_Q VPS9P, vacuolar protein 20.7 78 0.0027 22.5 3.0 26 117-142 3-28 (54)
33 1gk7_A Vimentin; intermediate 20.6 1.1E+02 0.0039 20.1 3.6 24 150-173 15-38 (39)
34 2ke4_A CDC42-interacting prote 20.0 1.7E+02 0.0059 22.8 5.2 61 113-174 8-88 (98)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.67 E-value=5.7e-17 Score=134.42 Aligned_cols=83 Identities=33% Similarity=0.452 Sum_probs=50.7
Q ss_pred hhhhcccccCcCCcHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCccchhHHHHHHHHHHHHHHHHHHhh------Hhh
Q 022116 103 HVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNK---ITGKAGMLDEIINYVQSLQRQVEFLSMK------LAA 173 (302)
Q Consensus 103 ~~r~rr~~a~~~H~~~ERrRR~kIne~~~~L~~LVP~~~K---~~dKasIL~eaI~YIk~Lq~qvq~Le~~------~~~ 173 (302)
+..+++++++.+|+++||+||++||++|.+|++|||+|.+ ..+|++||++||+||++||++++.|+.. +..
T Consensus 19 ~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~~~l~~ 98 (118)
T 4ati_A 19 RALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQKKLEH 98 (118)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999853 2389999999999999999999999753 333
Q ss_pred cCCCcccCcccc
Q 022116 174 VNPRLDFNVDNL 185 (302)
Q Consensus 174 ~~p~~~~~~~~l 185 (302)
.+-.+...+++|
T Consensus 99 ~n~~L~~riqeL 110 (118)
T 4ati_A 99 ANRHLLLRVQEL 110 (118)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444445444
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=3e-17 Score=127.93 Aligned_cols=64 Identities=27% Similarity=0.408 Sum_probs=58.1
Q ss_pred cCcCCcHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCccchhHHHHHHHHHHHHHHHHHHhhHhhcC
Q 022116 111 ATDSHSLAERVRREKISERMKYLQDLVPGC-NKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVN 175 (302)
Q Consensus 111 a~~~H~~~ERrRR~kIne~~~~L~~LVP~~-~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~~~ 175 (302)
.+.+|+.+||+||++||++|.+|++|||++ .| .||++||.+||+||++||.+++.|+.++..+.
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k-~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAK-LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999999999998 56 49999999999999999999999998876643
No 3
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=3.8e-16 Score=116.15 Aligned_cols=54 Identities=28% Similarity=0.515 Sum_probs=49.5
Q ss_pred ccCcCCcHHHHHHHHHHHHHHHHHHhcCCCCC------CCCCccchhHHHHHHHHHHHHHH
Q 022116 110 QATDSHSLAERVRREKISERMKYLQDLVPGCN------KITGKAGMLDEIINYVQSLQRQV 164 (302)
Q Consensus 110 ~a~~~H~~~ERrRR~kIne~~~~L~~LVP~~~------K~~dKasIL~eaI~YIk~Lq~qv 164 (302)
..+.+|+.+||+||++||++|.+|++|||.|. |+ +|++||++||+||+.||++.
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~-~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQ-SKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCC-CTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCC-CHHHHHHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999986 44 99999999999999999875
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=1.7e-16 Score=118.36 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=48.0
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCCCC------CCCccchhHHHHHHHHHHHHHHH
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGCNK------ITGKAGMLDEIINYVQSLQRQVE 165 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~~K------~~dKasIL~eaI~YIk~Lq~qvq 165 (302)
+.+|+++||+||++||+.|.+|+.|||.+.+ ..+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999999999999997633 23699999999999999998763
No 5
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.58 E-value=7.1e-16 Score=117.89 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=51.6
Q ss_pred cCcCCcHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCccchhHHHHHHHHHHHHHHHHHH
Q 022116 111 ATDSHSLAERVRREKISERMKYLQDLVPGCN-KITGKAGMLDEIINYVQSLQRQVEFLS 168 (302)
Q Consensus 111 a~~~H~~~ERrRR~kIne~~~~L~~LVP~~~-K~~dKasIL~eaI~YIk~Lq~qvq~Le 168 (302)
.+.+|+++||+||++||++|.+|++|||++. |+ ||++||+.||+||+.||+++.-|+
T Consensus 8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~-dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCC-CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCC-cHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3567999999999999999999999999864 65 999999999999999999987654
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=4.9e-16 Score=119.25 Aligned_cols=53 Identities=30% Similarity=0.516 Sum_probs=47.9
Q ss_pred cccCcCCcHHHHHHHHHHHHHHHHHHhcCCCC----CCCCCccchhHHHHHHHHHHHH
Q 022116 109 GQATDSHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQR 162 (302)
Q Consensus 109 ~~a~~~H~~~ERrRR~kIne~~~~L~~LVP~~----~K~~dKasIL~eaI~YIk~Lq~ 162 (302)
.+++.+|+++||+||++||++|.+|++|||.| .|+ |||+||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~Kl-dKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCC-CHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccc-cHHHHHHHHHHHHHHHhc
Confidence 34467899999999999999999999999987 575 999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=9.1e-15 Score=113.01 Aligned_cols=62 Identities=27% Similarity=0.472 Sum_probs=56.8
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCccchhHHHHHHHHHHHHHHHHHHhhHhhc
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGC--NKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAV 174 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~--~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~~ 174 (302)
+..|+.+||+||.+||+.|..|+++||.+ .|+ +|++||..||+||+.|+++++.|+.++..+
T Consensus 13 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 13 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999987 465 999999999999999999999999877653
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.49 E-value=1.2e-14 Score=112.79 Aligned_cols=62 Identities=27% Similarity=0.472 Sum_probs=55.3
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCccchhHHHHHHHHHHHHHHHHHHhhHhhc
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGC--NKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAV 174 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~--~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~~ 174 (302)
+..|+..||+||++||+.|..|+++||.+ .|+ +|++||..||+||+.|+++++.|+.++..+
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~-sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA-SRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999985 575 999999999999999999999888765543
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=5.2e-14 Score=111.13 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=53.1
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCccchhHHHHHHHHHHHHHHHHHHhhHh
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGC---NKITGKAGMLDEIINYVQSLQRQVEFLSMKLA 172 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~---~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~ 172 (302)
+..|+..||+||++||++|..|+++||.+ .|. +|++||.+||+||++|+.+.+.+.....
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~-sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKA-PKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999999999976 465 9999999999999999999887765443
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.39 E-value=9.9e-14 Score=107.11 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=48.5
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGC---NKITGKAGMLDEIINYVQSLQRQVEFLSM 169 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~---~K~~dKasIL~eaI~YIk~Lq~qvq~Le~ 169 (302)
+..|+..||+||++||++|.+|+++||.+ .|...|+.||..||+||++||+++++++.
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56799999999999999999999999964 33225778999999999999999997753
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.32 E-value=1.5e-12 Score=101.19 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=53.3
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCccchhHHHHHHHHHHHHHHHHHHhhHhh
Q 022116 113 DSHSLAERVRREKISERMKYLQDLVPGC---NKITGKAGMLDEIINYVQSLQRQVEFLSMKLAA 173 (302)
Q Consensus 113 ~~H~~~ERrRR~kIne~~~~L~~LVP~~---~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~ 173 (302)
..|+..||+||..||++|..|+++||.+ .|. .|++||..||+||+.|+++.+.|......
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~-sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRH-TTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999965 454 89999999999999999999988776543
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.04 E-value=1.2e-10 Score=109.79 Aligned_cols=54 Identities=22% Similarity=0.437 Sum_probs=42.1
Q ss_pred ccCcCCcHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCccchhHHHHHHHHHHHHHH
Q 022116 110 QATDSHSLAERVRREKISERMKYLQDLVPG-CNKITGKAGMLDEIINYVQSLQRQV 164 (302)
Q Consensus 110 ~a~~~H~~~ERrRR~kIne~~~~L~~LVP~-~~K~~dKasIL~eaI~YIk~Lq~qv 164 (302)
..+.+|+.+||+||++||+.|.+|++|||. ..|+ ||++||..||+|||.|+...
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~-dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKM-DKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCc-CHHHHHHHHHHHHHHHHhhc
Confidence 446779999999999999999999999994 4676 99999999999999998653
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.01 E-value=7.2e-11 Score=89.33 Aligned_cols=53 Identities=23% Similarity=0.403 Sum_probs=47.0
Q ss_pred CcCCcHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCccchhHHHHHHHHHHHHHHH
Q 022116 112 TDSHSLAERVRREKISERMKYLQDLVPGC--NKITGKAGMLDEIINYVQSLQRQVE 165 (302)
Q Consensus 112 ~~~H~~~ERrRR~kIne~~~~L~~LVP~~--~K~~dKasIL~eaI~YIk~Lq~qvq 165 (302)
+..|+..||+|+..||+.|..|+++||.. .|+ .|+.||..||+||+.|++.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~Kl-SKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRL-PKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCC-CHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHc
Confidence 34599999999999999999999999975 454 899999999999999998653
No 14
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=2.2e-10 Score=109.49 Aligned_cols=54 Identities=28% Similarity=0.420 Sum_probs=48.3
Q ss_pred cccCcCCcHHHHHHHHHHHHHHHHHHhcCC----CCCCCCCccchhHHHHHHHHHHHHH
Q 022116 109 GQATDSHSLAERVRREKISERMKYLQDLVP----GCNKITGKAGMLDEIINYVQSLQRQ 163 (302)
Q Consensus 109 ~~a~~~H~~~ERrRR~kIne~~~~L~~LVP----~~~K~~dKasIL~eaI~YIk~Lq~q 163 (302)
++++.+|+.+||+||+|||+.|.+|+.||| ...|+ ||++||..||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~-dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKL-DKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCC-CHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCcccccc-CHHHHHHHHHHHHHHhhcc
Confidence 445778999999999999999999999999 45686 9999999999999999853
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.94 E-value=4.2e-10 Score=83.12 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=46.4
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCCC--CCCCCccchhHHHHHHHHHHHHHHH
Q 022116 113 DSHSLAERVRREKISERMKYLQDLVPGC--NKITGKAGMLDEIINYVQSLQRQVE 165 (302)
Q Consensus 113 ~~H~~~ERrRR~kIne~~~~L~~LVP~~--~K~~dKasIL~eaI~YIk~Lq~qvq 165 (302)
..|+..||+|+..||+.|..|+++||.. +++..|..+|..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 3488999999999999999999999965 2334899999999999999998764
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.83 E-value=1.1e-09 Score=86.01 Aligned_cols=46 Identities=30% Similarity=0.510 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCCC----CCCCccchhHHHHHHHHHHHHHHHHHHh
Q 022116 123 REKISERMKYLQDLVPGCN----KITGKAGMLDEIINYVQSLQRQVEFLSM 169 (302)
Q Consensus 123 R~kIne~~~~L~~LVP~~~----K~~dKasIL~eaI~YIk~Lq~qvq~Le~ 169 (302)
|.+||++|++|..|||.++ +. +|++||..||+||+.||++++.+.+
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~-nKg~IL~ksvdYI~~Lq~e~~r~~e 53 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRW-NKGTILKASVDYIRKLQREQQRAKD 53 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCC-SHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999874 44 8999999999999999997776653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.41 E-value=5.8e-08 Score=73.55 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=40.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCC---CCCCCccchhHHHHHHHHHHHH
Q 022116 116 SLAERVRREKISERMKYLQDLVPGC---NKITGKAGMLDEIINYVQSLQR 162 (302)
Q Consensus 116 ~~~ERrRR~kIne~~~~L~~LVP~~---~K~~dKasIL~eaI~YIk~Lq~ 162 (302)
+..||+|+..||+.|..||.+||.. .|+ .|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKL-SKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQL-SQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCC-CHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCc-cHHHHHHHHHHHHHHHHc
Confidence 4568999999999999999999965 354 899999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.82 E-value=2.8e-05 Score=62.53 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCC--CCCCCccchhHHHHHHHHHHHHHHHH
Q 022116 119 ERVRREKISERMKYLQDLVPGC--NKITGKAGMLDEIINYVQSLQRQVEF 166 (302)
Q Consensus 119 ERrRR~kIne~~~~L~~LVP~~--~K~~dKasIL~eaI~YIk~Lq~qvq~ 166 (302)
||.|=..||+.|..||.+||.. +++..|..+|..||+||+.|++.++.
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5778788999999999999965 33348999999999999999998864
No 19
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.04 E-value=41 Score=24.05 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHhhHhh
Q 022116 119 ERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAA 173 (302)
Q Consensus 119 ERrRR~kIne~~~~L~~LVP~~~K~~dKasIL~eaI~YIk~Lq~qvq~Le~~~~~ 173 (302)
||++|.+..+++.+.+. .+ .-.+|+..|+.+|..|+.....
T Consensus 1 Ekr~rrrerNR~AA~rc-----R~---------rKk~~~~~Le~~v~~L~~~n~~ 41 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----RN---------RRRELTDTLQAETDQLEDEKSA 41 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777763 22 1235666666666666655444
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=42.64 E-value=16 Score=26.69 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCCCccc
Q 022116 154 INYVQSLQRQVEFLSMKLAAVNPRLDF 180 (302)
Q Consensus 154 I~YIk~Lq~qvq~Le~~~~~~~p~~~~ 180 (302)
..||..|+++++.||..+..+.|..++
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~~l 70 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPREDL 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchhh
Confidence 469999999999999999888775543
No 21
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.71 E-value=19 Score=25.46 Aligned_cols=21 Identities=10% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhc
Q 022116 154 INYVQSLQRQVEFLSMKLAAV 174 (302)
Q Consensus 154 I~YIk~Lq~qvq~Le~~~~~~ 174 (302)
-.||..|+++|+.|+..+..+
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999988764
No 22
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=38.73 E-value=12 Score=26.32 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhhHhhcC
Q 022116 155 NYVQSLQRQVEFLSMKLAAVN 175 (302)
Q Consensus 155 ~YIk~Lq~qvq~Le~~~~~~~ 175 (302)
.||..|+.+++.|+..+..+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888887776543
No 23
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=35.34 E-value=59 Score=24.06 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhHhhcCCC
Q 022116 154 INYVQSLQRQVEFLSMKLAAVNPR 177 (302)
Q Consensus 154 I~YIk~Lq~qvq~Le~~~~~~~p~ 177 (302)
-.||+.|+.+++.||..+..+...
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~~ 70 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGVD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 459999999999999999876543
No 24
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.78 E-value=23 Score=25.51 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhHhhc
Q 022116 154 INYVQSLQRQVEFLSMKLAAV 174 (302)
Q Consensus 154 I~YIk~Lq~qvq~Le~~~~~~ 174 (302)
-.||..|+.+|+.||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999877654
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.71 E-value=47 Score=25.56 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhh
Q 022116 150 LDEIINYVQSLQRQVEFLSMKLAA 173 (302)
Q Consensus 150 L~eaI~YIk~Lq~qvq~Le~~~~~ 173 (302)
+..||+-|.-||..+++|++++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999987755
No 26
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=28.55 E-value=56 Score=27.47 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCC----CCCCCccchhHHHHHHHHHH
Q 022116 125 KISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSL 160 (302)
Q Consensus 125 kIne~~~~L~~LVP~~----~K~~dKasIL~eaI~YIk~L 160 (302)
-|.-.|..|+.+||.- .++ -|-.||..|-|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~l-pk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERL-PKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSC-CHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhh-hHHHHHHHHHHHHHHH
Confidence 5788999999999853 344 7999999999998876
No 27
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.27 E-value=48 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhHhhc
Q 022116 155 NYVQSLQRQVEFLSMKLAAV 174 (302)
Q Consensus 155 ~YIk~Lq~qvq~Le~~~~~~ 174 (302)
.||..|+.+|..|+..+..+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68888888888887766543
No 28
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=22.50 E-value=42 Score=20.29 Aligned_cols=11 Identities=55% Similarity=0.450 Sum_probs=7.5
Q ss_pred CcHHHHHHHHH
Q 022116 115 HSLAERVRREK 125 (302)
Q Consensus 115 H~~~ERrRR~k 125 (302)
-+-+||+||..
T Consensus 9 psgaerrrrra 19 (26)
T 1g70_B 9 PSGAERRRRRA 19 (26)
T ss_pred CchHHHHHHHH
Confidence 45678888753
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=21.73 E-value=63 Score=23.95 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q 022116 155 NYVQSLQRQVEFLSM 169 (302)
Q Consensus 155 ~YIk~Lq~qvq~Le~ 169 (302)
.||+.|+.+|..|+.
T Consensus 29 ~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 29 DHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555543
No 30
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=21.64 E-value=46 Score=29.64 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCccchhHHHHHHHHHHHHHHHHH
Q 022116 120 RVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFL 167 (302)
Q Consensus 120 RrRR~kIne~~~~L~~LVP~~~K~~dKasIL~eaI~YIk~Lq~qvq~L 167 (302)
++=|..++.-+..|+.|+-..- ...-.++.+||+|+|.|-+-...|
T Consensus 50 Q~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~L 95 (204)
T 2jqq_A 50 EKTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSL 95 (204)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888764332 257788999999999998766544
No 31
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.46 E-value=96 Score=21.75 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhHhhcC
Q 022116 148 GMLDEIINYVQSLQRQVEFLSMKLAAVN 175 (302)
Q Consensus 148 sIL~eaI~YIk~Lq~qvq~Le~~~~~~~ 175 (302)
..|+..++-+..|.++++.|+.++..++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588889999999999999998887654
No 32
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=20.66 E-value=78 Score=22.50 Aligned_cols=26 Identities=15% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Q 022116 117 LAERVRREKISERMKYLQDLVPGCNK 142 (302)
Q Consensus 117 ~~ERrRR~kIne~~~~L~~LVP~~~K 142 (302)
.++|-+|...++-+..|+.+.|...+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999998654
No 33
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.55 E-value=1.1e+02 Score=20.08 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhHhh
Q 022116 150 LDEIINYVQSLQRQVEFLSMKLAA 173 (302)
Q Consensus 150 L~eaI~YIk~Lq~qvq~Le~~~~~ 173 (302)
|..-|+-|++|+++-+.|+.++..
T Consensus 15 lAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 15 FANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344678889999999999887653
No 34
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.01 E-value=1.7e+02 Score=22.81 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=36.5
Q ss_pred cCCcHHHHHHHHHHHHHHHHHHhcCCC-----------------CCCCCC---ccchhHHHHHHHHHHHHHHHHHHhhHh
Q 022116 113 DSHSLAERVRREKISERMKYLQDLVPG-----------------CNKITG---KAGMLDEIINYVQSLQRQVEFLSMKLA 172 (302)
Q Consensus 113 ~~H~~~ERrRR~kIne~~~~L~~LVP~-----------------~~K~~d---KasIL~eaI~YIk~Lq~qvq~Le~~~~ 172 (302)
.+|-.-||||+ +|..+|..|+.=|=. -..+.| -..-|.++..-|..|+..+..++.-++
T Consensus 8 ~s~LPpeqRkk-kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 8 FSHLPPEQQRK-RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSSCHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666554 666666665543320 011122 234577888888888888888887666
Q ss_pred hc
Q 022116 173 AV 174 (302)
Q Consensus 173 ~~ 174 (302)
.+
T Consensus 87 e~ 88 (98)
T 2ke4_A 87 EA 88 (98)
T ss_dssp HH
T ss_pred HH
Confidence 54
Done!