Query 022117
Match_columns 302
No_of_seqs 208 out of 407
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 08:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 8.9E-25 1.9E-29 159.7 5.9 49 127-175 2-51 (51)
2 PLN03162 golden-2 like transcr 99.9 4.1E-24 8.9E-29 207.4 6.5 61 31-92 232-292 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 3.8E-22 8.3E-27 148.0 6.6 56 34-89 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.3 0.00058 1.3E-08 47.9 5.0 48 36-87 1-48 (48)
5 smart00426 TEA TEA domain. 91.9 0.17 3.8E-06 39.6 3.2 46 38-85 5-67 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 84.1 2.6 5.7E-05 31.4 4.8 22 141-162 6-27 (51)
7 PF15235 GRIN_C: G protein-reg 76.1 1.9 4.1E-05 38.0 2.1 19 147-165 70-88 (137)
8 PF12776 Myb_DNA-bind_3: Myb/S 68.6 7.1 0.00015 30.1 3.6 51 38-88 1-63 (96)
9 TIGR02894 DNA_bind_RsfA transc 60.3 69 0.0015 29.1 8.6 50 33-88 45-94 (161)
10 cd00167 SANT 'SWI3, ADA2, N-Co 59.1 43 0.00092 21.3 5.5 44 38-86 1-44 (45)
11 PF01285 TEA: TEA/ATTS domain 59.0 9.3 0.0002 39.0 3.3 55 32-86 45-112 (431)
12 smart00717 SANT SANT SWI3, AD 58.2 47 0.001 21.3 5.7 44 37-85 2-45 (49)
13 smart00501 BRIGHT BRIGHT, ARID 54.0 13 0.00027 29.3 2.7 47 41-88 32-85 (93)
14 cd07646 I-BAR_IMD_IRSp53 Inver 44.2 86 0.0019 30.0 6.9 39 127-165 66-113 (232)
15 PF07384 DUF1497: Protein of u 32.5 38 0.00083 25.7 2.2 22 37-58 36-57 (59)
16 PF06548 Kinesin-related: Kine 29.2 3.5E+02 0.0076 28.6 9.0 38 127-164 294-343 (488)
17 cd07645 I-BAR_IMD_BAIAP2L1 Inv 27.8 2.3E+02 0.005 27.1 7.0 39 127-165 64-111 (226)
18 PF08127 Propeptide_C1: Peptid 26.8 34 0.00074 24.1 1.0 35 43-84 1-35 (41)
19 KOG3841 TEF-1 and related tran 25.7 40 0.00087 34.6 1.7 52 35-88 75-143 (455)
20 PF09535 Gmx_para_CXXCG: Prote 25.0 34 0.00073 32.8 1.0 12 44-55 214-225 (237)
21 PF01519 DUF16: Protein of unk 24.8 4E+02 0.0086 22.7 7.1 18 151-168 70-88 (102)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.91 E-value=8.9e-25 Score=159.66 Aligned_cols=49 Identities=53% Similarity=0.805 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhHhHHHHHHHHH-HHHHHHHHhh
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLA-MLERACKILT 175 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEVQRhLQLRIEAQGKYLq-iLEKAqe~La 175 (302)
++|+||||+||||||||||||||||+||+|||||||||+ |||||+++++
T Consensus 2 ~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 2 MQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999999999998 9999999874
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=4.1e-24 Score=207.38 Aligned_cols=61 Identities=46% Similarity=0.728 Sum_probs=58.1
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccccC
Q 022117 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQS 92 (302)
Q Consensus 31 ~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~~ 92 (302)
..+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.++.
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999 799999999999999999999999999999998763
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=3.8e-22 Score=148.04 Aligned_cols=56 Identities=63% Similarity=0.978 Sum_probs=54.4
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcc
Q 022117 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89 (302)
Q Consensus 34 K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (302)
|+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 79999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.28 E-value=0.00058 Score=47.90 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=41.4
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhh
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYR 87 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYR 87 (302)
|-.||+|=+.+|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999992 2 6889999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=91.93 E-value=0.17 Score=39.61 Aligned_cols=46 Identities=26% Similarity=0.427 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChH-HHHhh--c-c-----------cCCC--CHHHHHHhhhh
Q 022117 38 RWTADLHDRFVDAVTQLGGPSKATPK-AIMRT--M-N-----------VKGL--TLFHLKSHLQK 85 (302)
Q Consensus 38 ~WT~eLH~rFv~AV~qLGG~~kAtPK-~Il~~--M-~-----------v~gL--T~~hVkSHLQK 85 (302)
+|.++|-..|++|+...- + ..+-| .+... | | ..|. |+.+|.||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~-~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC-c-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 799999999999998775 2 22222 22211 1 1 1444 67899999985
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=84.08 E-value=2.6 Score=31.42 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHhHhHHHHHH
Q 022117 141 SKLHLQVEAEKHLQIRQNAQQR 162 (302)
Q Consensus 141 rrLhEQLEVQRhLQLRIEAQGK 162 (302)
--|..|+||||+|.=.+|.|.+
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~ 27 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666654
No 7
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=76.06 E-value=1.9 Score=37.99 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=16.7
Q ss_pred HHHHHHHhHhHHHHHHHHH
Q 022117 147 VEAEKHLQIRQNAQQRYLA 165 (302)
Q Consensus 147 LEVQRhLQLRIEAQGKYLq 165 (302)
+-|||||+++||.|+|-..
T Consensus 70 ~AIQkHLE~qi~e~~~q~~ 88 (137)
T PF15235_consen 70 MAIQKHLERQIEEHERQRA 88 (137)
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 6789999999999998764
No 8
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=68.64 E-value=7.1 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.299 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHHHh---CCC-CCCCh-----HHHHhhccc---CCCCHHHHHHhhhhhhc
Q 022117 38 RWTADLHDRFVDAVTQL---GGP-SKATP-----KAIMRTMNV---KGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 38 ~WT~eLH~rFv~AV~qL---GG~-~kAtP-----K~Il~~M~v---~gLT~~hVkSHLQKYRl 88 (302)
+||++..+-||+.+-+. |.- ....+ ..|.+.++- -.+|..||++|+...|.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988644 433 23333 445666654 45588999999985554
No 9
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=60.34 E-value=69 Score=29.06 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=36.4
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
.-=.|||+..+-..+.+||..-- -++-.++.. ...||+.+|-+-||.|..
T Consensus 45 AACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 45 AACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred HHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 34589999999999999997543 122222211 367999999999999975
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=59.08 E-value=43 Score=21.31 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=33.4
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 38 RWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 38 ~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
.||++=+..|+.++.++|- ..-+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 33566777764 46778888776543
No 11
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=58.98 E-value=9.3 Score=38.97 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=29.6
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChH----------HHHhhccc-CCC--CHHHHHHhhhhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPK----------AIMRTMNV-KGL--TLFHLKSHLQKY 86 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK----------~Il~~M~v-~gL--T~~hVkSHLQKY 86 (302)
+.+..-+|.+++...|++|+...-=-...+-+ -|-+-+.. -|. |+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45678899999999999999866311122211 11111111 233 679999999998
No 12
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=58.16 E-value=47 Score=21.34 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=33.4
Q ss_pred cccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhh
Q 022117 37 LRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQK 85 (302)
Q Consensus 37 l~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQK 85 (302)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|..+|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 1 23466666664 7788888877544
No 13
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=54.03 E-value=13 Score=29.32 Aligned_cols=47 Identities=28% Similarity=0.399 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCC----hHHHHhhcccCCC---CHHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKAT----PKAIMRTMNVKGL---TLFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAt----PK~Il~~M~v~gL---T~~hVkSHLQKYRl 88 (302)
-+|++-|. +|..+||.++.+ =+.|.+.||++.- ...++++|-.||=+
T Consensus 32 vdL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 32 LDLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CcHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 38999998 588999987544 3678899999752 35778888888743
No 14
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=44.17 E-value=86 Score=30.00 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHH---------HHHhHhHHHHHHHHH
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEAE---------KHLQIRQNAQQRYLA 165 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEVQ---------RhLQLRIEAQGKYLq 165 (302)
-+|..||.-=-||+|.++.+||++ ..|+-++|..-|||.
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~ 113 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLT 113 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777776678888888888865 578889999999986
No 15
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=32.49 E-value=38 Score=25.68 Aligned_cols=22 Identities=18% Similarity=0.602 Sum_probs=19.1
Q ss_pred cccCHHHHHHHHHHHHHhCCCC
Q 022117 37 LRWTADLHDRFVDAVTQLGGPS 58 (302)
Q Consensus 37 l~WT~eLH~rFv~AV~qLGG~~ 58 (302)
-++..|+|..|-+-|.+|||-+
T Consensus 36 ~kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 36 NKFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred hHhhHHHHHHHHHHHHHhcccc
Confidence 3678999999999999999853
No 16
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=29.16 E-value=3.5e+02 Score=28.56 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHH------------HHHHhHhHHHHHHHH
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEA------------EKHLQIRQNAQQRYL 164 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEV------------QRhLQLRIEAQGKYL 164 (302)
+-++|-||+-+|-.|.|-|.+|. +--||.-|+-|.|.|
T Consensus 294 IsLteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~l 343 (488)
T PF06548_consen 294 ISLTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARML 343 (488)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999888764 456777666666555
No 17
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=27.82 E-value=2.3e+02 Score=27.08 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHH---------HHHhHhHHHHHHHHH
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEAE---------KHLQIRQNAQQRYLA 165 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEVQ---------RhLQLRIEAQGKYLq 165 (302)
..|.++|..=-||+|+++.|||+. ..|.-.+|..-||+.
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~ 111 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMT 111 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788877778999999988853 567778888888886
No 18
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=26.80 E-value=34 Score=24.13 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhh
Q 022117 43 LHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQ 84 (302)
Q Consensus 43 LH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQ 84 (302)
|-+.||+-||...-..+|-.- +++.|..+|+..|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999998766676553 57788888877664
No 19
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=25.66 E-value=40 Score=34.62 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh--------------ccc---CCCCHHHHHHhhhhhhc
Q 022117 35 PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT--------------MNV---KGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 35 ~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~--------------M~v---~gLT~~hVkSHLQKYRl 88 (302)
.-=+|+++.-+.|.+|+.-.- ..-+-|-||.- ++. +-=|+.+|.||.|..-.
T Consensus 75 aegvWSpdIEqsFqEALaiyp--pcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlar 143 (455)
T KOG3841|consen 75 AEGVWSPDIEQSFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLAR 143 (455)
T ss_pred cccccChhHHHHHHHHHhhcC--CCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 345899999999999998653 22233333321 122 33478999999995543
No 20
>PF09535 Gmx_para_CXXCG: Protein of unknown function (Gmx_para_CXXCG); InterPro: IPR011750 This entry consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment.
Probab=25.04 E-value=34 Score=32.77 Aligned_cols=12 Identities=58% Similarity=1.057 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhC
Q 022117 44 HDRFVDAVTQLG 55 (302)
Q Consensus 44 H~rFv~AV~qLG 55 (302)
-+|||+||++||
T Consensus 214 TERFVeAv~rL~ 225 (237)
T PF09535_consen 214 TERFVEAVQRLG 225 (237)
T ss_pred eHHHHHHHHhcC
Confidence 479999999999
No 21
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=24.77 E-value=4e+02 Score=22.66 Aligned_cols=18 Identities=44% Similarity=0.624 Sum_probs=15.6
Q ss_pred HHHhHhHHHHHHHHH-HHH
Q 022117 151 KHLQIRQNAQQRYLA-MLE 168 (302)
Q Consensus 151 RhLQLRIEAQGKYLq-iLE 168 (302)
+.||.+|.+||+=|+ |++
T Consensus 70 kel~~e~k~qgktL~~I~~ 88 (102)
T PF01519_consen 70 KELQVEQKAQGKTLQLILK 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999 553
Done!