Query 022117
Match_columns 302
No_of_seqs 208 out of 407
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 14:15:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 5.9E-30 2E-34 193.3 6.6 61 30-91 1-61 (64)
2 2yum_A ZZZ3 protein, zinc fing 89.5 0.69 2.4E-05 34.1 5.6 55 33-90 5-62 (75)
3 2yus_A SWI/SNF-related matrix- 88.9 1.9 6.4E-05 32.8 7.7 49 34-88 16-64 (79)
4 2xag_B REST corepressor 1; ami 88.4 0.87 3E-05 45.6 7.0 66 19-90 363-428 (482)
5 2cu7_A KIAA1915 protein; nucle 88.0 1.4 4.8E-05 32.3 6.4 52 33-90 6-57 (72)
6 1x41_A Transcriptional adaptor 85.6 2.8 9.6E-05 29.7 6.7 51 33-88 5-55 (60)
7 2hzd_A Transcriptional enhance 85.6 0.85 2.9E-05 35.8 4.2 57 32-90 2-75 (82)
8 2iw5_B Protein corest, REST co 84.0 2 6.8E-05 39.5 6.4 64 21-90 118-181 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 80.1 2.8 9.5E-05 31.5 5.0 49 35-89 7-58 (72)
10 3sjm_A Telomeric repeat-bindin 74.7 8.9 0.00031 27.8 6.3 52 29-83 4-55 (64)
11 2cqr_A RSGI RUH-043, DNAJ homo 74.6 8.9 0.0003 28.8 6.4 52 35-89 17-69 (73)
12 2d9a_A B-MYB, MYB-related prot 69.4 18 0.00061 25.2 6.7 50 32-86 4-53 (60)
13 2elk_A SPCC24B10.08C protein; 67.1 5.9 0.0002 27.9 3.8 47 36-88 9-57 (58)
14 1ity_A TRF1; helix-turn-helix, 65.3 35 0.0012 24.4 7.7 54 32-88 6-59 (69)
15 1guu_A C-MYB, MYB proto-oncoge 63.3 20 0.0007 24.1 5.8 46 36-86 3-48 (52)
16 1wgx_A KIAA1903 protein; MYB D 59.3 27 0.00093 26.4 6.4 48 38-88 10-58 (73)
17 1gvd_A MYB proto-oncogene prot 53.9 37 0.0013 22.8 5.9 46 36-86 3-48 (52)
18 2dim_A Cell division cycle 5-l 50.1 52 0.0018 23.5 6.5 50 32-86 5-54 (70)
19 2cjj_A Radialis; plant develop 49.4 30 0.001 27.1 5.4 51 36-89 8-59 (93)
20 2yqk_A Arginine-glutamic acid 49.4 16 0.00053 26.3 3.5 47 32-83 5-51 (63)
21 3ok8_A Brain-specific angiogen 48.4 47 0.0016 30.0 7.2 39 127-165 71-118 (222)
22 2kes_A Synphilin-1; synphillin 46.5 16 0.00055 25.8 3.0 24 138-161 15-42 (48)
23 2eqr_A N-COR1, N-COR, nuclear 46.0 18 0.00061 25.7 3.3 46 32-83 8-53 (61)
24 2ba2_A D12_ORF131, hypothetica 44.3 72 0.0025 25.1 6.7 41 127-170 32-73 (85)
25 4eef_G F-HB80.4, designed hema 40.8 9 0.00031 29.5 1.1 52 30-84 14-66 (74)
26 2li6_A SWI/SNF chromatin-remod 38.7 5.3 0.00018 32.0 -0.5 45 41-88 49-97 (116)
27 1w0t_A Telomeric repeat bindin 37.4 94 0.0032 21.0 6.3 48 36-86 2-49 (53)
28 2lm1_A Lysine-specific demethy 37.3 12 0.00042 29.1 1.4 46 41-87 44-95 (107)
29 2aje_A Telomere repeat-binding 32.7 1E+02 0.0035 24.6 6.2 51 31-84 8-60 (105)
30 2eqy_A RBP2 like, jumonji, at 32.5 19 0.00065 29.0 1.8 47 41-88 42-94 (122)
31 1c20_A DEAD ringer protein; DN 32.5 16 0.00054 29.6 1.4 47 41-88 52-105 (128)
32 2crg_A Metastasis associated p 32.1 41 0.0014 24.7 3.5 48 31-83 3-50 (70)
33 1kkx_A Transcription regulator 32.1 11 0.00039 30.6 0.4 45 41-88 48-96 (123)
34 2cxy_A BAF250B subunit, HBAF25 31.2 17 0.00057 29.4 1.3 47 41-88 51-103 (125)
35 2jrz_A Histone demethylase jar 30.0 18 0.00063 28.9 1.3 47 41-88 40-92 (117)
36 1deq_A Fibrinogen (alpha chain 28.9 95 0.0033 30.4 6.3 48 127-174 112-160 (390)
37 2jxj_A Histone demethylase jar 28.1 17 0.0006 27.7 0.9 45 41-86 36-86 (96)
38 2din_A Cell division cycle 5-l 27.3 1.6E+02 0.0055 20.6 6.1 49 34-89 7-55 (66)
39 1gv2_A C-MYB, MYB proto-oncoge 25.1 1.6E+02 0.0054 22.2 5.9 46 36-86 4-49 (105)
40 2kk0_A AT-rich interactive dom 23.9 33 0.0011 28.5 1.8 47 41-88 64-117 (145)
41 3osg_A MYB21; transcription-DN 23.1 1.8E+02 0.0063 22.9 6.1 49 32-86 7-55 (126)
42 3ghg_A Fibrinogen alpha chain; 23.0 1.7E+02 0.0057 30.0 7.0 55 127-181 109-164 (562)
43 1ig6_A MRF-2, modulator recogn 22.6 15 0.0005 28.8 -0.6 47 41-88 33-86 (107)
44 1gv2_A C-MYB, MYB proto-oncoge 22.1 2.3E+02 0.0077 21.3 6.2 46 35-86 55-100 (105)
45 1qgp_A Protein (double strande 21.6 1E+02 0.0036 22.5 4.0 45 39-86 11-55 (77)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=5.9e-30 Score=193.33 Aligned_cols=61 Identities=46% Similarity=0.771 Sum_probs=58.1
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcccc
Q 022117 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQ 91 (302)
Q Consensus 30 ~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~~ 91 (302)
++++|+|++||+|||++||+||++|| .|+||||.||++|+|+|||++||||||||||+...
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999 79999999999999999999999999999999754
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.50 E-value=0.69 Score=34.08 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=42.1
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCCh---HHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATP---KAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (302)
Q Consensus 33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtP---K~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (302)
...+-.||+|=+++|++||..+| .+...| +.|-+. |+|=|-.+|+.|-++|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADE--LGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHHHHH
Confidence 34466899999999999999999 333223 344444 47899999999999997654
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=88.87 E-value=1.9 Score=32.83 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=40.3
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 34 K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
..+-.||+|=+.+|++||...|+ .=+.|-+.| ++=|..+++.|-++|-+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence 34678999999999999999993 346677765 48899999999988844
No 4
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=88.37 E-value=0.87 Score=45.56 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=52.9
Q ss_pred CCCCCCCceeeecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117 19 HGGGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (302)
Q Consensus 19 ~~gg~~~~~Vl~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (302)
+.+|+++--+.....|..-+||++=|..|++||.+.| + .=+.|-+.++- =|..+|++|.++||...
T Consensus 363 ~~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 363 LDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGN--KSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSS--CCHHHHHHHHHHTTTTT
T ss_pred hhcccccccCCccccccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCC--CCHHHHHHHHHHHHHHh
Confidence 3467666655555667789999999999999999998 2 47788888664 49999999999998854
No 5
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.98 E-value=1.4 Score=32.34 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=42.3
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (302)
Q Consensus 33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (302)
...+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|-.+|+.|.++|-...
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 445778999999999999999992 44666664 48999999999999886544
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=85.59 E-value=2.8 Score=29.71 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 33 PKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 33 ~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
.-.+-.||+|=.++|++||..+| . -.=+.|-+.| +|=|-.+++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 34567899999999999999999 1 1235666666 68899999999888755
No 7
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=85.59 E-value=0.85 Score=35.77 Aligned_cols=57 Identities=23% Similarity=0.292 Sum_probs=36.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh---c-c-----------c--CCCCHHHHHHhhhhhhccc
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT---M-N-----------V--KGLTLFHLKSHLQKYRLGK 90 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~---M-~-----------v--~gLT~~hVkSHLQKYRl~~ 90 (302)
|++..-+|.++|-..|++|+...-=....+. +|.. | | . +-=|+.+|.||||.-+..+
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~--~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~ 75 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRRKI--ILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRK 75 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCCCC--CHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCccce--eecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHH
Confidence 3456678999999999999997751112222 2211 1 1 0 2337799999999876644
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=83.97 E-value=2 Score=39.50 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=50.9
Q ss_pred CCCCCceeeecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhccc
Q 022117 21 GGIEPCVVMTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGK 90 (302)
Q Consensus 21 gg~~~~~Vl~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~~ 90 (302)
++++.--...+..|..-+||+|=++.|++|+...|- .-..|-++ |++=|..+|++|..+||...
T Consensus 118 ~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 118 GGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTT
T ss_pred hhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 555443344566678889999999999999999992 27777777 67899999999999998643
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.10 E-value=2.8 Score=31.48 Aligned_cols=49 Identities=14% Similarity=0.347 Sum_probs=38.7
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChH---HHHhhcccCCCCHHHHHHhhhhhhcc
Q 022117 35 PRLRWTADLHDRFVDAVTQLGGPSKATPK---AIMRTMNVKGLTLFHLKSHLQKYRLG 89 (302)
Q Consensus 35 ~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK---~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (302)
..-.||.|=+++|+.|+..+++ -||. .|-+.| |=|..+|+.|-+++...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 3447999999999999999983 3564 455555 67999999998887654
No 10
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=74.71 E-value=8.9 Score=27.79 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=37.2
Q ss_pred eecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhh
Q 022117 29 MTSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (302)
Q Consensus 29 l~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (302)
+++..+.|-.||+|=-++++++|.+.|. -.=+.|.+.+.+.|=|-.+++-+-
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 3455567789999999999999999992 135678888877788888887543
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=74.57 E-value=8.9 Score=28.80 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=40.5
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhc-ccCCCCHHHHHHhhhhhhcc
Q 022117 35 PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTM-NVKGLTLFHLKSHLQKYRLG 89 (302)
Q Consensus 35 ~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M-~v~gLT~~hVkSHLQKYRl~ 89 (302)
.+-.||++=...|++||..+|. -+|..--++= -|||=|-.+|+.|-+.+...
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 3446999999999999999992 3786654433 35899999999998877654
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=69.43 E-value=18 Score=25.20 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
+...|-.||+|=.++++++|.++|- -.=..|-+.| +|=|-.+++.|-.+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 4556889999999999999999992 1235565554 688889999887766
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=67.10 E-value=5.9 Score=27.94 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=36.3
Q ss_pred CcccCHHHHHHHHHHHHHhC-CCCCCChHHHHhhcccC-CCCHHHHHHhhhhhhc
Q 022117 36 RLRWTADLHDRFVDAVTQLG-GPSKATPKAIMRTMNVK-GLTLFHLKSHLQKYRL 88 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLG-G~~kAtPK~Il~~M~v~-gLT~~hVkSHLQKYRl 88 (302)
+-.||+|=.+++++||.+.| + .=+.|-+.| + |=|..+++.|-++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~----~W~~IA~~~--~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG----NWADIADYV--GNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT----CHHHHHHHH--CSSCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHH--CCCCCHHHHHHHHHHHcc
Confidence 45699999999999999999 3 234555555 4 6788999988877743
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=65.25 E-value=35 Score=24.44 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
.+++|-.||+|=-...+++|.++|. -.=+.|.+.|++.|=|-.+++.+-..|-.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 4677889999999999999999991 13467778876558888999987766643
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=63.26 E-value=20 Score=24.11 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=36.3
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
+-.||+|=..+++++|.+.|- ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 568999999999999999992 2346666664 688889998887665
No 16
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=59.31 E-value=27 Score=26.43 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=37.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cccCCCCHHHHHHhhhhhhc
Q 022117 38 RWTADLHDRFVDAVTQLGGPSKATPKAIMRT-MNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 38 ~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~-M~v~gLT~~hVkSHLQKYRl 88 (302)
.||.+=..+|.+|+..++ +.+|.+--++ .-|+|=|.++|+.|-+....
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 599999999999999887 4478765443 34689999999988665533
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=53.88 E-value=37 Score=22.82 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
+-.||+|=..+++++|.+.|- -.=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1234555554 688888888877665
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.13 E-value=52 Score=23.51 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=39.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
+...|-.||+|=.++++++|.+.| . -.=+.|-+.|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G-~--~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYG-K--NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTC-S--SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 345677899999999999999999 1 23466777764 88999999887766
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=49.42 E-value=30 Score=27.09 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=38.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhh-cccCCCCHHHHHHhhhhhhcc
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRT-MNVKGLTLFHLKSHLQKYRLG 89 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~-M~v~gLT~~hVkSHLQKYRl~ 89 (302)
.-.||+|=...|++|+..+| . -+|.+--++ --|||=|-.+|+.|-+++...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-K--DTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44699999999999999998 2 256433222 224799999999999887543
No 20
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.40 E-value=16 Score=26.35 Aligned_cols=47 Identities=21% Similarity=0.245 Sum_probs=33.5
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (302)
+...+-.||+|=|+.|.+|+.+.| -+ -..|-+.| |+.=|..+|..+-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG-KN---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC-SC---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCcHHHHHHHH
Confidence 344567899999999999999999 22 44454421 5777888877554
No 21
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=48.43 E-value=47 Score=30.00 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHH---------HHHhHhHHHHHHHHH
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEAE---------KHLQIRQNAQQRYLA 165 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEVQ---------RhLQLRIEAQGKYLq 165 (302)
-+|.+||..=-|+||+|..+||.. .+|+.+||...||++
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~ 118 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIK 118 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877778999999998863 689999999999996
No 22
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=46.47 E-value=16 Score=25.79 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=17.1
Q ss_pred HHHHhhHHH----HHHHHHHhHhHHHHH
Q 022117 138 EVQSKLHLQ----VEAEKHLQIRQNAQQ 161 (302)
Q Consensus 138 EvQrrLhEQ----LEVQRhLQLRIEAQG 161 (302)
.+-|+|+|| +-+|.+||.=+|||.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345667766 457889998888874
No 23
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.95 E-value=18 Score=25.71 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=35.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (302)
.++..-.||+|=|+.|++|+.+.| . .-..|-+. +|+=|..+|..|-
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHHH
Confidence 456678999999999999999998 2 35666544 5788888887653
No 24
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=44.30 E-value=72 Score=25.13 Aligned_cols=41 Identities=34% Similarity=0.328 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhHhHHHHHHHHH-HHHHH
Q 022117 127 YEVKEALRVQMEVQSKLHLQVEAEKHLQIRQNAQQRYLA-MLERA 170 (302)
Q Consensus 127 ~~i~eaLr~QmEvQrrLhEQLEVQRhLQLRIEAQGKYLq-iLEKA 170 (302)
..|.+.+..|=|-=+.--||| +.||+-+.|||+-|+ ||+--
T Consensus 32 ~kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 32 TVVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 446677776655444444555 788999999999998 66443
No 25
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=40.81 E-value=9 Score=29.52 Aligned_cols=52 Identities=25% Similarity=0.258 Sum_probs=35.0
Q ss_pred ecCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcc-cCCCCHHHHHHhhh
Q 022117 30 TSDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMN-VKGLTLFHLKSHLQ 84 (302)
Q Consensus 30 ~~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~-v~gLT~~hVkSHLQ 84 (302)
+...-.--.||.+=.+.|..|+.... +-||.+--++-. |||=|.+.|+.|-|
T Consensus 14 ~s~~~ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 14 ASTRGSGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --------CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 33333345699999999999998875 557866544332 68999999998854
No 26
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=38.71 E-value=5.3 Score=31.99 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
-+|+.-|.. |..+||.++.+. +.|.+.|++|. -..|++|-.||=+
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 488888876 789999987664 57889999987 5678888777744
No 27
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=37.37 E-value=94 Score=20.95 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
|-.||+|=.+..+++|...|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999991 134677777765577888887665444
No 28
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=37.32 E-value=12 Score=29.12 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCC--HHHHHHhhhhhh
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYR 87 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYR 87 (302)
-+||.-|.. |..+||.++.+- +.|.+.|++|.-| -..++.|-.||=
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L 95 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERIL 95 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 489999987 679999987764 5678899997633 256777666663
No 29
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=32.71 E-value=1e+02 Score=24.59 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=39.5
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcc--cCCCCHHHHHHhhh
Q 022117 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMN--VKGLTLFHLKSHLQ 84 (302)
Q Consensus 31 ~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~--v~gLT~~hVkSHLQ 84 (302)
..+++|-.||+|=-+..+++|.++|. -.=+.|++.+. ++|=|--++|.+..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdrWr 60 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDKWK 60 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHHHH
Confidence 45788999999999999999999993 12457777653 48889999995543
No 30
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.47 E-value=19 Score=29.04 Aligned_cols=47 Identities=19% Similarity=0.134 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCC--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (302)
-+|++-|.. |..+||.++.+- +.|.+.|++|.-+ ...++.|-.||=+
T Consensus 42 lDLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 42 LDLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred ccHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 388988876 789999887664 5788899997543 2567777666644
No 31
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=32.45 E-value=16 Score=29.58 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCC-C--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGL-T--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gL-T--~~hVkSHLQKYRl 88 (302)
-+||.-|.. |..+||.++.+- +.|.+.|+++.- | ...++.|-.||=+
T Consensus 52 vDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 52 LDLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 389999886 779999987664 578889998752 2 4678887777644
No 32
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=32.14 E-value=41 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=35.6
Q ss_pred cCCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhh
Q 022117 31 SDPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHL 83 (302)
Q Consensus 31 ~~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHL 83 (302)
+.++..-.||++=|..|.+|+...| -+ -..|-+.| ||+=|..+|..+-
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yG-Kd---f~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYG-KD---FNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTC-SC---HHHHHHTT-CSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhC-cc---HHHHHHHH-cCCCCHHHHHHHH
Confidence 3456777999999999999999999 22 45554411 6788888887765
No 33
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=32.11 E-value=11 Score=30.64 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCCHHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLTLFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT~~hVkSHLQKYRl 88 (302)
-+|+.-|.. |..+||.++.+. +.|.+.|++|. -..|+.|-.||=+
T Consensus 48 lDL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 48 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CCTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 378888876 789999988876 56788999988 6788887777655
No 34
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=31.22 E-value=17 Score=29.38 Aligned_cols=47 Identities=23% Similarity=0.395 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCC--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (302)
-+||+-|.. |..+||.++.+- +.|.+.|+++.-| -..|+.|-.||=+
T Consensus 51 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 51 LDLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp CCHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred ecHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 388988876 779999986654 5788899998643 3556666555533
No 35
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=30.00 E-value=18 Score=28.86 Aligned_cols=47 Identities=19% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCC--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKYRl 88 (302)
-+|+.-|.. |..+||.++.+- +.|.+.|++|.-| ...|+.|-.||=+
T Consensus 40 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 40 LDLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred ecHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 388988886 779999887664 5788899997433 3567777776643
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.93 E-value=95 Score=30.38 Aligned_cols=48 Identities=27% Similarity=0.249 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHH-HHHhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHh
Q 022117 127 YEVKEALRVQME-VQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKIL 174 (302)
Q Consensus 127 ~~i~eaLr~QmE-vQrrLhEQLEVQRhLQLRIEAQGKYLqiLEKAqe~L 174 (302)
.++++-|+.+++ +|+++.+||.-=|.||--|+.|-.=+|-||.+-+.-
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887664 799999999977999999999999999888876433
No 37
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=28.05 E-value=17 Score=27.66 Aligned_cols=45 Identities=22% Similarity=0.075 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCCC--HHHHHHhhhhh
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGLT--LFHLKSHLQKY 86 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gLT--~~hVkSHLQKY 86 (302)
-+|+.-|.. |..+||.++.+- +.|.+.|+++.-+ ...++.|-.||
T Consensus 36 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 36 LDLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred ccHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 378888876 779999987664 5778899986432 34566665555
No 38
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.25 E-value=1.6e+02 Score=20.58 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=38.2
Q ss_pred CCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhhhcc
Q 022117 34 KPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKYRLG 89 (302)
Q Consensus 34 K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKYRl~ 89 (302)
..+-.||+|=.++++++|..+|- .=..|-++ +|=|-.+++.|-+.|-..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~---~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT----QWRTIAPI---IGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHH---HSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHhcc---cCcCHHHHHHHHHHHhCh
Confidence 35668999999999999999982 34566664 468899999998877543
No 39
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=25.12 E-value=1.6e+02 Score=22.20 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=35.6
Q ss_pred CcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 36 RLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 36 Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
+-.||+|=.++++++|...|. -.=+.|-+.| ||=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 457999999999999999993 1234666665 688889998776655
No 40
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=23.90 E-value=33 Score=28.49 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCCC-C--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKGL-T--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~gL-T--~~hVkSHLQKYRl 88 (302)
-+|+.-|.. |..+||.++.+- +.|.+.|++|.- | ...|+.|-.||=+
T Consensus 64 vDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 64 LDLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred ecHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 388988886 779999987664 578889999752 2 4678887777744
No 41
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=23.05 E-value=1.8e+02 Score=22.85 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=37.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 32 DPKPRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 32 ~~K~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
.+..|-.||+|=-++++++|.+.|. .=+.|-+.| +|=|..++..+-.+|
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNY 55 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhh
Confidence 4566789999999999999999993 456676665 577878887766555
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.01 E-value=1.7e+02 Score=29.97 Aligned_cols=55 Identities=25% Similarity=0.155 Sum_probs=42.8
Q ss_pred hhHHHHHH-HHHHHHHhhHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhhccCC
Q 022117 127 YEVKEALR-VQMEVQSKLHLQVEAEKHLQIRQNAQQRYLAMLERACKILTDQILGG 181 (302)
Q Consensus 127 ~~i~eaLr-~QmEvQrrLhEQLEVQRhLQLRIEAQGKYLqiLEKAqe~La~~~~~~ 181 (302)
.++++-|| ....++++|..||.--|.||=.|+.|-.=||-||.+--+--+..-++
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 67776666 44567888888887779999999999999999998776665555443
No 43
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=22.56 E-value=15 Score=28.79 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCCh----HHHHhhcccCC-CC--HHHHHHhhhhhhc
Q 022117 41 ADLHDRFVDAVTQLGGPSKATP----KAIMRTMNVKG-LT--LFHLKSHLQKYRL 88 (302)
Q Consensus 41 ~eLH~rFv~AV~qLGG~~kAtP----K~Il~~M~v~g-LT--~~hVkSHLQKYRl 88 (302)
-+|+.-|.. |..+||.++.+- +.|.+.|+++. .| -.+|++|-.||=+
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 488988876 779999987765 56788999864 22 2567777777744
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=22.05 E-value=2.3e+02 Score=21.30 Aligned_cols=46 Identities=22% Similarity=0.285 Sum_probs=35.9
Q ss_pred CCcccCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 35 PRLRWTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 35 ~Rl~WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
.+-.||+|=...++++|.++|. .=..|-+. +||=|-.+|+.|-..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 3568999999999999999993 23455554 5899999999886543
No 45
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.58 E-value=1e+02 Score=22.50 Aligned_cols=45 Identities=13% Similarity=0.178 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHHHHhCCCCCCChHHHHhhcccCCCCHHHHHHhhhhh
Q 022117 39 WTADLHDRFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSHLQKY 86 (302)
Q Consensus 39 WT~eLH~rFv~AV~qLGG~~kAtPK~Il~~M~v~gLT~~hVkSHLQKY 86 (302)
=|++..++.++++...|--+..|.+.|-+.+|| +.-.|..||.+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 467888899999999994467899999999984 567788888443
Done!