BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022119
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 35 NKAADEIGKLNPLTQMPEKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPR 94
N D + + ++PE T N+ + H + A A+ SQ +S+ + +++ +D
Sbjct: 377 NSNNDTVQIQEVVKKLPELTAKKNT-IDTHXNIFA--ALLSQLESKSLDTFFEVEQDPGS 433
Query: 95 SDM-GKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEE 153
+ +F IL GK +NL D++ SF+V L P FVQ +E E +
Sbjct: 434 TKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTS-------TTGLPKDFVQNVENYFKEND 486
Query: 154 YILMA 158
Y + A
Sbjct: 487 YDINA 491
>pdb|1CYX|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii With
Engineered Cu-A Binding Site)(Cyoa)
Length = 205
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 52 EKTGGGNSGMRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPR--SDMGKFTRI 103
E G G+SGM+F T A + QW + K K P SDM F ++
Sbjct: 99 EICGPGHSGMKFKAIATPDRAAFDQWVA--------KAKQSPNTMSDMAAFEKL 144
>pdb|1TUF|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
pdb|1TUF|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschi
Length = 434
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 279 WDPEVGKRFILHYTYGCDYNLKV 301
W+ E GK FI+ Y Y + NL +
Sbjct: 54 WEEETGKEFIVAYAYXANANLAI 76
>pdb|1TWI|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|B Chain B, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|C Chain C, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
pdb|1TWI|D Chain D, Crystal Structure Of Diaminopimelate Decarboxylase From M.
Jannaschii In Co-Complex With L-Lysine
Length = 434
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 279 WDPEVGKRFILHYTYGCDYNLKV 301
W+ E GK FI+ Y Y + NL +
Sbjct: 54 WEEETGKEFIVAYAYKANANLAI 76
>pdb|2JZA|A Chain A, Solution Nmr Structure Of Nitrite Reductase [nad(P)h]
Small Subunit From Erwinia Carotovora. Northeast
Structural Genomics Consortium Target Ewr120
Length = 130
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 193 IIRKFYPEEMGPVTNVDPIGNSPVIIKKYLLEEISPTWLNVSLRMKDDHETDKQFGWVLE 252
+ R E++ ++N+DP + V+ + + E W+ L+ + D G+ LE
Sbjct: 30 VFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD---GFCLE 86
Query: 253 MYAYAVAS 260
AY+VA+
Sbjct: 87 DGAYSVAA 94
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 LHSGKADNLMDEIPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEK 147
+H GK ++L D + L LD G VL + A ++WLE+
Sbjct: 32 VHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEE 75
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex With
Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 LHSGKADNLMDEIPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEK 147
+H GK ++L D + L LD G VL + A ++WLE+
Sbjct: 33 VHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWLEE 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,493,376
Number of Sequences: 62578
Number of extensions: 417202
Number of successful extensions: 1018
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 8
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)