Query 022119
Match_columns 302
No_of_seqs 111 out of 131
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulb_A Target of rapamycin com 21.2 49 0.0017 27.3 2.3 38 152-189 28-68 (121)
2 2l9a_X LAK160-P12; cationic, p 19.9 22 0.00076 21.6 -0.0 17 223-239 7-23 (26)
3 3ffy_A Putative tetrapyrrole ( 16.9 93 0.0032 24.3 3.0 44 115-160 69-112 (115)
4 1rrp_B Nuclear pore complex pr 16.2 71 0.0024 25.9 2.2 39 44-82 2-46 (134)
5 2lk9_A Bone marrow stromal ant 15.1 63 0.0021 21.2 1.3 21 7-27 8-28 (35)
6 1ll2_A Glycogenin-1; protein-s 10.6 1.2E+02 0.0041 28.0 2.3 104 61-171 3-114 (333)
7 1g9r_A Glycosyl transferase; a 9.3 1.4E+02 0.0049 26.7 2.2 20 151-170 95-114 (311)
8 4hg6_A Cellulose synthase subu 9.1 1.9E+02 0.0066 29.7 3.3 26 137-164 226-251 (802)
9 3j1r_A Archaeal adhesion filam 8.4 2.8E+02 0.0095 17.0 2.5 18 11-28 7-24 (26)
10 2zjr_K 50S ribosomal protein L 8.4 1.6E+02 0.0054 24.0 1.9 14 95-108 89-102 (116)
No 1
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=21.24 E-value=49 Score=27.28 Aligned_cols=38 Identities=13% Similarity=0.173 Sum_probs=29.9
Q ss_pred ccEEEEecCCeeeecCCCC---CCCCCCCcccccccccCCC
Q 022119 152 EEYILMAEPDHIFVKPLPN---LAQGNHPAGFPFFYIKPAE 189 (302)
Q Consensus 152 e~~IlmlDpD~I~~rPl~~---~a~~g~p~a~~f~Yi~p~~ 189 (302)
.|=+|.||.|+|-+-|-.. +-..+...++.|.-|++|+
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS~H~s~Vv~~K 68 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKSLHISQVVLVK 68 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEEEEGGGEEEEE
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEEEEEeeEEEEE
Confidence 5778999999999999853 3346788899999999886
No 2
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=19.91 E-value=22 Score=21.57 Aligned_cols=17 Identities=29% Similarity=0.849 Sum_probs=14.0
Q ss_pred HHhhhHHHHHhHhhhcc
Q 022119 223 LEEISPTWLNVSLRMKD 239 (302)
Q Consensus 223 L~riAP~W~~~t~~v~~ 239 (302)
|.++||.|-.++.+.+.
T Consensus 7 laklaplwkalalklkk 23 (26)
T 2l9a_X 7 LAKLAPLWKALALKLKK 23 (26)
T ss_dssp SSSSCTHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHh
Confidence 57899999999887764
No 3
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural genomics, APC62130.1, methyltransferase, PSI-2, P structure initiative; 2.00A {Bacteroides fragilis} PDB: 3fq6_A
Probab=16.95 E-value=93 Score=24.32 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=30.1
Q ss_pred CCCceEeCCCCCCCCCcCcccCchhHHHHHHHhcCCCccEEEEecC
Q 022119 115 EIPSFVVDPLPEGLDRGYIVLNRPWAFVQWLEKATIEEEYILMAEP 160 (302)
Q Consensus 115 eiPT~vvdpl~~~~dd~Y~v~NKP~A~~qWL~~a~i~e~~IlmlDp 160 (302)
..|-+++.-+.-. ..-.......-+.+|++...++.++|+++++
T Consensus 69 ~~~v~v~relTk~--~E~~~rgtl~el~~~~~~~~~kGe~vivv~~ 112 (115)
T 3ffy_A 69 ERQVSVSREISKI--HEETVRGTLSELIEHFTATDPRGEIVIVLAG 112 (115)
T ss_dssp TCEEEEEEESSSS--CEEEEEEEHHHHHHHHHHSCCCSSEEEEECC
T ss_pred CCEEEeeeccCCC--ceEEEEeeHHHHHHHHHhcCCCCCEEEEEeC
Confidence 3455555444321 2334555677889999999999999999985
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=16.23 E-value=71 Score=25.91 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=30.8
Q ss_pred CCccccccccCCCCCCCCeeEEEEeecCcccc------hhhhhhh
Q 022119 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (302)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (302)
+.|++++|....-.+....=.++|+.-|..|. .|.-|+.
T Consensus 2 ~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~ 46 (134)
T 1rrp_B 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred cccceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcE
Confidence 57999999877766667777899999998875 4776654
No 5
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=15.09 E-value=63 Score=21.21 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 022119 7 LGVSSFLLVLLALGFFFATYN 27 (302)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (302)
|-+-..+|+.++||..++.|-
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~ 28 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFT 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHhcchheEEe
Confidence 455667778888888888774
No 6
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=10.65 E-value=1.2e+02 Score=27.97 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=51.4
Q ss_pred CeeEEEEeecCcccchhhhhhhhHHHHHhhcCCCCCCCCceEEEecCCCCC----ccCCCCce-EeCCCCCCCCCcCccc
Q 022119 61 MRFHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADN----LMDEIPSF-VVDPLPEGLDRGYIVL 135 (302)
Q Consensus 61 ~~~H~vfSt~cs~Y~~WQsrvmy~s~kk~~~~~ggq~G~fTRILhsg~~D~----LmdeiPT~-vvdpl~~~~dd~Y~v~ 135 (302)
+..++++++|. .|- =++.++.+|.++.. ..-.+.=|...+-+++ |...-.+. .++++..........+
T Consensus 3 ~~a~vt~~~d~-~Yl-~~a~vl~~SL~~~~-----s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~ 75 (333)
T 1ll2_A 3 DQAFVTLTTND-AYA-KGALVLGSSLKQHR-----TSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLM 75 (333)
T ss_dssp SEEEEEEESSH-HHH-HHHHHHHHHHHHTT-----CCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHH
T ss_pred ceEEEEEEeCH-HHH-HHHHHHHHHHHHhC-----CCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccc
Confidence 34667776554 455 37888889988763 1122221332222222 21111222 2344333211111122
Q ss_pred CchhHHHHHHHhc--C-CCccEEEEecCCeeeecCCCCC
Q 022119 136 NRPWAFVQWLEKA--T-IEEEYILMAEPDHIFVKPLPNL 171 (302)
Q Consensus 136 NKP~A~~qWL~~a--~-i~e~~IlmlDpD~I~~rPl~~~ 171 (302)
+||.--.-|.+-. + .+-+-||-||+|+|+++++..+
T Consensus 76 ~~~~~~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eL 114 (333)
T 1ll2_A 76 KRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDL 114 (333)
T ss_dssp HCGGGHHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGG
T ss_pred cccchHHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHH
Confidence 3443222233221 2 3458999999999999998754
No 7
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=9.31 E-value=1.4e+02 Score=26.67 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.7
Q ss_pred CccEEEEecCCeeeecCCCC
Q 022119 151 EEEYILMAEPDHIFVKPLPN 170 (302)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~ 170 (302)
+-+-||-+|+|+|+++++..
T Consensus 95 ~~~kvlyLD~D~iv~~di~e 114 (311)
T 1g9r_A 95 DCDKVLYLDIDVLVRDSLTP 114 (311)
T ss_dssp SCSCEEEECSSEEECSCCHH
T ss_pred hcCEEEEEcCCeEeccCHHH
Confidence 45889999999999999875
No 8
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=9.07 E-value=1.9e+02 Score=29.70 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.3
Q ss_pred chhHHHHHHHhcCCCccEEEEecCCeee
Q 022119 137 RPWAFVQWLEKATIEEEYILMAEPDHIF 164 (302)
Q Consensus 137 KP~A~~qWL~~a~i~e~~IlmlDpD~I~ 164 (302)
|..|+.+-++++ +.|||+++|+|.+.
T Consensus 226 Ka~alN~gl~~a--~gd~Il~lDaD~~~ 251 (802)
T 4hg6_A 226 KAGNMSAALERL--KGELVVVFDADHVP 251 (802)
T ss_dssp HHHHHHHHHHHC--CCSEEEECCTTEEE
T ss_pred chHHHHHHHHhc--CCCEEEEECCCCCc
Confidence 677888888887 67999999999987
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.45 E-value=2.8e+02 Score=17.02 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 022119 11 SFLLVLLALGFFFATYNL 28 (302)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~ 28 (302)
..+|++++.+...+.|--
T Consensus 7 ~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 7 TLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457788888888887743
No 10
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=8.44 E-value=1.6e+02 Score=23.96 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=11.6
Q ss_pred CCCCCceEEEecCC
Q 022119 95 SDMGKFTRILHSGK 108 (302)
Q Consensus 95 gq~G~fTRILhsg~ 108 (302)
+..|++|||+-+|.
T Consensus 89 ~R~GGYTRI~K~~~ 102 (116)
T 2zjr_K 89 ERPGGYTRILRVGT 102 (116)
T ss_dssp TSCSCCCEEEECCC
T ss_pred CCCCCeeEEEECCC
Confidence 67899999998763
Done!