Query 022119
Match_columns 302
No_of_seqs 111 out of 131
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 14:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022119.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022119hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ga8a_ c.68.1.4 (A:) Galactos 56.0 8.2 0.0006 31.8 5.7 160 63-235 1-178 (282)
2 d1ll2a_ c.68.1.14 (A:) Glycoge 21.7 20 0.0014 29.0 2.2 22 150-171 93-114 (263)
3 d1rrpb_ b.55.1.3 (B:) Nuclear 19.3 23 0.0017 26.6 2.0 39 44-82 2-46 (134)
4 d1k1ga_ d.51.1.1 (A:) RNA spli 16.9 62 0.0045 24.3 4.0 18 55-72 62-79 (122)
5 d1omza_ c.68.1.15 (A:) Alpha-1 13.5 47 0.0034 24.2 2.4 15 150-164 80-94 (265)
6 d1z8ua1 a.7.11.1 (A:2-91) Alph 13.4 36 0.0026 24.7 1.5 20 216-235 29-48 (90)
7 d1vioa1 d.265.1.3 (A:58-231) R 10.4 19 0.0014 28.0 -1.0 14 129-142 2-15 (174)
8 d1o7qa_ c.68.1.9 (A:) alpha-1, 10.4 53 0.0039 28.4 2.0 21 151-171 136-156 (287)
9 d1yfua1 b.82.1.20 (A:1-174) 3- 10.3 63 0.0046 26.1 2.3 15 134-148 3-17 (174)
10 d1lzia_ c.68.1.9 (A:) Glycosyl 10.2 54 0.004 28.3 2.0 21 151-171 141-161 (283)
No 1
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}
Probab=56.01 E-value=8.2 Score=31.80 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=72.0
Q ss_pred eEEEEeecCcccchhhhhhhhHHHHHhhcCCCCCCCCc-eEEEecCCCCC----ccCCC----CceEeCCCCCCCCCcCc
Q 022119 63 FHVALTATDAIYSQWQSRIMYYWYKKVKDMPRSDMGKF-TRILHSGKADN----LMDEI----PSFVVDPLPEGLDRGYI 133 (302)
Q Consensus 63 ~H~vfSt~cs~Y~~WQsrvmy~s~kk~~~~~ggq~G~f-TRILhsg~~D~----Lmdei----PT~vvdpl~~~~dd~Y~ 133 (302)
+|+||++|.+ |.. +..++-+|.++.. .--.+ --|++++-+++ |-..+ .++...+.....-..++
T Consensus 1 mnIv~~~D~n-Y~~-~~~~~i~SL~~~~-----~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~ 73 (282)
T d1ga8a_ 1 MDIVFAADDN-YAA-YLCVAAKSVEAAH-----PDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFP 73 (282)
T ss_dssp CEEEEEECGG-GHH-HHHHHHHHHHHHC-----TTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGGGTTSC
T ss_pred CEEEEECCHH-HHH-HHHHHHHHHHHHC-----cCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchHhcccc
Confidence 5899998874 533 6888888987762 11122 23666655543 11111 22222121110000111
Q ss_pred ccCchh---HHH-HHHHhcCCCccEEEEecCCeeeecCCCCC---CCCCCCcccccccccCCChHHHHHhhccCCCCCCc
Q 022119 134 VLNRPW---AFV-QWLEKATIEEEYILMAEPDHIFVKPLPNL---AQGNHPAGFPFFYIKPAEHEKIIRKFYPEEMGPVT 206 (302)
Q Consensus 134 v~NKP~---A~~-qWL~~a~i~e~~IlmlDpD~I~~rPl~~~---a~~g~p~a~~f~Yi~p~~~e~~l~k~~p~~~gp~~ 206 (302)
.-++.+ .+. -.+...=.+-+-||-+|+|+|+++++..+ .-++...|+--.+..+.... ...++ .- +..
T Consensus 74 ~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~-~~~~~-~~---~~~ 148 (282)
T d1ga8a_ 74 LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEG-YKQKI-GM---ADG 148 (282)
T ss_dssp CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTT-HHHHT-TC---CTT
T ss_pred ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhh-hHHHh-CC---CCC
Confidence 111111 100 01111112346799999999999998753 23444444433333222211 11111 00 001
Q ss_pred ccCCCCCcceEEeHhHHHh--hhHHHHHhHh
Q 022119 207 NVDPIGNSPVIIKKYLLEE--ISPTWLNVSL 235 (302)
Q Consensus 207 ~~d~vG~sP~im~~~DL~r--iAP~W~~~t~ 235 (302)
+...-.| ..+++.+.+++ +...+.++..
T Consensus 149 ~~yfNsG-Vml~n~~~~r~~~~~~~~~~~~~ 178 (282)
T d1ga8a_ 149 EYYFNAG-VLLINLKKWRRHDIFKMSSEWVE 178 (282)
T ss_dssp SCCEEEE-EEEECHHHHTTSCHHHHHHHHHH
T ss_pred Cceeecc-eeeechhhhhhhhHHHHHHHHHH
Confidence 1222233 67787777764 4455555444
No 2
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.66 E-value=20 Score=29.01 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCccEEEEecCCeeeecCCCCC
Q 022119 150 IEEEYILMAEPDHIFVKPLPNL 171 (302)
Q Consensus 150 i~e~~IlmlDpD~I~~rPl~~~ 171 (302)
.+.+-||-||+|+|+++++..+
T Consensus 93 ~~ydkvlYLDaD~lv~~~id~L 114 (263)
T d1ll2a_ 93 TQYSKCVFMDADTLVLANIDDL 114 (263)
T ss_dssp TTCSEEEEECTTEEECSCCGGG
T ss_pred cccceEEEeCCCEEEecCHHHH
Confidence 3568999999999999999764
No 3
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.31 E-value=23 Score=26.58 Aligned_cols=39 Identities=13% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCccccccccCCCCCCCCeeEEEEeecCcccc------hhhhhhh
Q 022119 44 LNPLTQMPEKTGGGNSGMRFHVALTATDAIYS------QWQSRIM 82 (302)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~H~vfSt~cs~Y~------~WQsrvm 82 (302)
|-|++++|.+..-.+....=-++|+.-|..|. .|..|+.
T Consensus 2 f~p~~~l~~~v~~~tgEE~E~~if~~r~KL~~~~~~~~~WkerGv 46 (134)
T d1rrpb_ 2 FEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGI 46 (134)
T ss_dssp CCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEE
T ss_pred ccCcccCCCccceecCccCcEEEEEEeeEEEEEcCCCCceeeeeE
Confidence 57999999877644444445788888888764 4766654
No 4
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.90 E-value=62 Score=24.26 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=13.3
Q ss_pred CCCCCCCeeEEEEeecCc
Q 022119 55 GGGNSGMRFHVALTATDA 72 (302)
Q Consensus 55 ~~~~~~~~~H~vfSt~cs 72 (302)
........+|+.+|+++.
T Consensus 62 ~~~~~~epLHv~I~a~~~ 79 (122)
T d1k1ga_ 62 MLPGEDEPLHALVTANTM 79 (122)
T ss_dssp CSCCSSCCEEEEEEESSH
T ss_pred CCCCCCCCceEEEecCCh
Confidence 344456789999999873
No 5
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.55 E-value=47 Score=24.24 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=13.4
Q ss_pred CCccEEEEecCCeee
Q 022119 150 IEEEYILMAEPDHIF 164 (302)
Q Consensus 150 i~e~~IlmlDpD~I~ 164 (302)
.+.|||+.+|+|-++
T Consensus 80 a~ge~i~~lD~D~~~ 94 (265)
T d1omza_ 80 VETNAVLMVDDDTLI 94 (265)
T ss_dssp CCSSEEEEECTTEEE
T ss_pred CCcCEEEEeCcccCC
Confidence 477999999999887
No 6
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.43 E-value=36 Score=24.72 Aligned_cols=20 Identities=10% Similarity=0.414 Sum_probs=17.1
Q ss_pred eEEeHhHHHhhhHHHHHhHh
Q 022119 216 VIIKKYLLEEISPTWLNVSL 235 (302)
Q Consensus 216 ~im~~~DL~riAP~W~~~t~ 235 (302)
-+|..+||.-|..+|.++-.
T Consensus 29 ~~iseedMvtvV~DWvn~Yi 48 (90)
T d1z8ua1 29 ALVSEEDMVTVVEDWMNFYI 48 (90)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 36999999999999999643
No 7
>d1vioa1 d.265.1.3 (A:58-231) Ribosomal small subunit pseudouridine 516 synthase RsuA {Haemophilus influenzae [TaxId: 727]}
Probab=10.40 E-value=19 Score=27.98 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=11.8
Q ss_pred CCcCcccCchhHHH
Q 022119 129 DRGYIVLNRPWAFV 142 (302)
Q Consensus 129 dd~Y~v~NKP~A~~ 142 (302)
++.|.++|||.++.
T Consensus 2 ~~~Yi~lNKP~G~~ 15 (174)
T d1vioa1 2 EGQYFMLNKPQGCV 15 (174)
T ss_dssp CCCEEEEEECTTCB
T ss_pred CCEEEEEECCCCEE
Confidence 46899999999974
No 8
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.38 E-value=53 Score=28.43 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=18.5
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 022119 151 EEEYILMAEPDHIFVKPLPNL 171 (302)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (302)
+.+|++-+|+||+|..++...
T Consensus 136 e~Dylf~~DaDm~f~~~vg~E 156 (287)
T d1o7qa_ 136 EVDFLFCMDVDQVFQDKFGVE 156 (287)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCeEEEEeCCceEecccccc
Confidence 459999999999999999764
No 9
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=10.26 E-value=63 Score=26.09 Aligned_cols=15 Identities=20% Similarity=0.833 Sum_probs=13.5
Q ss_pred ccCchhHHHHHHHhc
Q 022119 134 VLNRPWAFVQWLEKA 148 (302)
Q Consensus 134 v~NKP~A~~qWL~~a 148 (302)
.++||.-+.+|++..
T Consensus 3 ~~~~P~n~~~Wieen 17 (174)
T d1yfua1 3 TYGAPFNFPRWIDEH 17 (174)
T ss_dssp TTCSCCCHHHHHHHT
T ss_pred cccCCccHHHHHHhh
Confidence 578999999999986
No 10
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=54 Score=28.31 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.6
Q ss_pred CccEEEEecCCeeeecCCCCC
Q 022119 151 EEEYILMAEPDHIFVKPLPNL 171 (302)
Q Consensus 151 ~e~~IlmlDpD~I~~rPl~~~ 171 (302)
+.||++-+|+||+|..++...
T Consensus 141 e~DyLf~~DaDm~f~~~vg~E 161 (283)
T d1lzia_ 141 EVDYLVCVDVDMEFRDHVGVE 161 (283)
T ss_dssp HCSEEEEECSSEEECSCBCGG
T ss_pred cCCEEEEeecceEEecccccE
Confidence 459999999999999999764
Done!