BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022125
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LIP2|PSB5B_ARATH Proteasome subunit beta type-5-B OS=Arabidopsis thaliana GN=PBE2
PE=1 SV=1
Length = 273
Score = 279 bits (714), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/164 (84%), Positives = 145/164 (88%), Gaps = 2/164 (1%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSGLE+T P FGS E+ S+APSF LP +TDFD FQK +K AKGTTT
Sbjct: 1 MKLDTSGLETTMPVIGFGSNSEMLDGFSSAPSFDLPRTTDFDGFQKKAVEMVKPAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDET
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDET 164
>sp|O23717|PSB5A_ARATH Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1
PE=1 SV=1
Length = 274
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/164 (82%), Positives = 145/164 (88%), Gaps = 2/164 (1%)
Query: 1 MKLDTSGLESTSPF--FGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTT 58
MKLDTSG E++ P FGS ++ ELS+ PSF LP + +FD FQK K LKHAKGTTT
Sbjct: 1 MKLDTSGFETSMPMIGFGSSSDMLDELSSVPSFDLPRTKEFDGFQKKAKDMLKHAKGTTT 60
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAFIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC
Sbjct: 61 LAFIFKGGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 120
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
RLHELANKRRISV+GASKLLAN+LYSYRGMGLSVGTMIAGWDET
Sbjct: 121 RLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDET 164
>sp|O24361|PSB5_SPIOL Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1
Length = 272
Score = 277 bits (708), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 136/162 (83%), Positives = 141/162 (87%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLA 60
MKLDTSGLEST+P F D + L PSF LP TDFD FQK+ +K AKGTTTLA
Sbjct: 1 MKLDTSGLESTAPIFRRSDFVFDGLQMTPSFDLPNPTDFDGFQKEAVQMVKPAKGTTTLA 60
Query: 61 FIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
FIFK GVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL
Sbjct: 61 FIFKHGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL 120
Query: 121 HELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
HELANKRRISVTGASKLLANILY+YRGMGLSVGTMIAGWDET
Sbjct: 121 HELANKRRISVTGASKLLANILYNYRGMGLSVGTMIAGWDET 162
>sp|Q32KL2|PSB5_BOVIN Proteasome subunit beta type-5 OS=Bos taurus GN=PSMB5 PE=1 SV=1
Length = 263
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 104/135 (77%), Gaps = 11/135 (8%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEILH--GTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDE 161
GMGLS+GTMI GWD+
Sbjct: 151 GMGLSMGTMICGWDK 165
>sp|P28075|PSB5_RAT Proteasome subunit beta type-5 OS=Rattus norvegicus GN=Psmb5 PE=1
SV=3
Length = 263
Score = 167 bits (424), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 104/135 (77%), Gaps = 11/135 (8%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F+ GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFQHGVIVAADSRATAGPYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDE 161
GMGLS+GTMI GWD+
Sbjct: 151 GMGLSMGTMICGWDK 165
>sp|O55234|PSB5_MOUSE Proteasome subunit beta type-5 OS=Mus musculus GN=Psmb5 PE=1 SV=3
Length = 264
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 103/135 (76%), Gaps = 11/135 (8%)
Query: 27 AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSV 86
AAPS+ +P ++ + + H GTTTLAF F GV+VAADSRA+ G YI+SQ+V
Sbjct: 42 AAPSWGVP---------EEPRIEMLH--GTTTLAFKFLHGVIVAADSRATAGAYIASQTV 90
Query: 87 KKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR 146
KK+IEINPY+LGTMAGGAADC FW R L +CR++EL NK RISV ASKLLAN++Y Y+
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYK 150
Query: 147 GMGLSVGTMIAGWDE 161
GMGLS+GTMI GWD+
Sbjct: 151 GMGLSMGTMICGWDK 165
>sp|Q5R8S2|PSB5_PONAB Proteasome subunit beta type-5 OS=Pongo abelii GN=PSMB5 PE=2 SV=3
Length = 263
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 92/107 (85%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L
Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
+CR++EL NK RISV ASKLLAN++Y Y+GMGLS+GTMI GWD+
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK 165
>sp|P28074|PSB5_HUMAN Proteasome subunit beta type-5 OS=Homo sapiens GN=PSMB5 PE=1 SV=3
Length = 263
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/107 (71%), Positives = 92/107 (85%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTTLAF F+ GV+VAADSRA+ G YI+SQ+VKK+IEINPY+LGTMAGGAADC FW R L
Sbjct: 59 GTTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLL 118
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
+CR++EL NK RISV ASKLLAN++Y Y+GMGLS+GTMI GWD+
Sbjct: 119 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK 165
>sp|Q54BC8|PSB5_DICDI Proteasome subunit beta type-5 OS=Dictyostelium discoideum GN=psmB5
PE=1 SV=1
Length = 272
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 10/176 (5%)
Query: 1 MKLDTSGLESTSPFFGSGDELCPELS--AAPSFSLPLSTDFDEFQKDT------KATLKH 52
+ +D +E + P D L ++ P F LP + + +F ++T L+
Sbjct: 2 INIDFDNIEQSQPTLY--DTLASDVKFLNTPHFELPPNANPGDFLRETFDHPSAPKALEF 59
Query: 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 112
A GTTTLAF++ G++V+ DS+++ G Y++S+SVKK+IEI P +LGTMAGGAADC FW R
Sbjct: 60 AHGTTTLAFVYGGGIIVSVDSKSTQGPYVASRSVKKVIEITPTLLGTMAGGAADCSFWER 119
Query: 113 NLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMF 168
LG +CRL+EL NK ISV ASK+LANI+YSY+G GLS+GTMI GWD+T + +
Sbjct: 120 ELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPQLYY 175
>sp|P30656|PSB5_YEAST Proteasome subunit beta type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE2 PE=1 SV=3
Length = 287
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/143 (56%), Positives = 103/143 (72%), Gaps = 7/143 (4%)
Query: 21 LCPELS----AAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRAS 76
L P L+ A+P L TD D D K + H GTTTLAF F+ G++VA DSRA+
Sbjct: 40 LAPSLTVPPIASPQQFLRAHTD-DSRNPDCKIKIAH--GTTTLAFRFQGGIIVAVDSRAT 96
Query: 77 MGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASK 136
G +++SQ+VKK+IEINP++LGTMAGGAADCQFW LG +CRLHEL K RISV ASK
Sbjct: 97 AGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASK 156
Query: 137 LLANILYSYRGMGLSVGTMIAGW 159
+L+N++Y Y+G GLS+GTMI G+
Sbjct: 157 ILSNLVYQYKGAGLSMGTMICGY 179
>sp|P30655|PSB5_SCHPO Probable proteasome subunit beta type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pts1 PE=3 SV=3
Length = 272
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
Query: 24 ELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISS 83
++ P SL L DE K+ +K GTTTLAF ++ G++V DSRAS G I+S
Sbjct: 31 DVVPVPQSSLYLRNLTDE-TKNKHCLIKMNHGTTTLAFRYQHGIVVCVDSRASAGPLIAS 89
Query: 84 QSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILY 143
Q+VKK+IEINPY+LGT+AGGAADCQFW LG++CRLH+L NK ISV+ ASK+L+NI Y
Sbjct: 90 QTVKKVIEINPYLLGTLAGGAADCQFWETVLGMECRLHQLRNKELISVSAASKILSNITY 149
Query: 144 SYRGMGLSVGTMIAG 158
SY+G GLS+GTM+AG
Sbjct: 150 SYKGYGLSMGTMLAG 164
>sp|P28064|PSB8_RAT Proteasome subunit beta type-8 OS=Rattus norvegicus GN=Psmb8 PE=1
SV=3
Length = 276
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 99/140 (70%), Gaps = 6/140 (4%)
Query: 28 APSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
AP +LP EF ++ K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 APELALPRGMQPTEFLRSFGDDQERKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATIRVNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDE 161
+ YRGMGLS+G+MI GWD+
Sbjct: 159 MLQYRGMGLSMGSMICGWDK 178
>sp|P34065|PSB5_CHICK Proteasome subunit beta type-5 (Fragment) OS=Gallus gallus GN=PSMB5
PE=2 SV=2
Length = 256
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 88/107 (82%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTTLAF F GV+VA DSRA+ G YI+SQ+V+K+IEINP +LGTMAGGAADC FW R L
Sbjct: 55 GTTTLAFKFAHGVVVAVDSRATAGSYIASQTVQKVIEINPSLLGTMAGGAADCSFWERLL 114
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
+CR++EL NK ISV ASKLLAN++Y Y+GMGLS+GTMI GWD+
Sbjct: 115 ARQCRVYELRNKEPISVAAASKLLANMVYQYKGMGLSMGTMICGWDK 161
>sp|P28062|PSB8_HUMAN Proteasome subunit beta type-8 OS=Homo sapiens GN=PSMB8 PE=1 SV=3
Length = 276
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 104/163 (63%), Gaps = 10/163 (6%)
Query: 9 ESTSPFFGSGDELCPELSA----APSFSLPLSTDFDEF------QKDTKATLKHAKGTTT 58
ES P GSG P + +P +LP EF + ++ A GTTT
Sbjct: 16 ESALPVAGSGRRSDPGHYSFSMRSPELALPRGMQPTEFFQSLGGDGERNVQIEMAHGTTT 75
Query: 59 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118
LAF F+ GV+ A DSRAS G YIS+ V K+IEINPY+LGTM+G AADCQ+W R L +C
Sbjct: 76 LAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGTMSGCAADCQYWERLLAKEC 135
Query: 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
RL+ L N RISV+ ASKLL+N++ YRGMGLS+G+MI GWD+
Sbjct: 136 RLYYLRNGERISVSAASKLLSNMMCQYRGMGLSMGSMICGWDK 178
>sp|Q5W416|PSB8_CANFA Proteasome subunit beta type-8 OS=Canis familiaris GN=PSMB8 PE=1
SV=1
Length = 276
Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 10/142 (7%)
Query: 28 APSFSLPLSTDFDEF--------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGG 79
AP ++P EF +K+ + + H GTTTLAF F+ GV+VA DSRA+ G
Sbjct: 39 APELAVPRGMQPTEFFQSLGENGEKNIRKEMVH--GTTTLAFKFQHGVIVAVDSRATAGN 96
Query: 80 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 139
YISS V K+IEINP +LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+
Sbjct: 97 YISSSRVNKVIEINPSLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLS 156
Query: 140 NILYSYRGMGLSVGTMIAGWDE 161
N++Y YRGM LS+G+MI GWD+
Sbjct: 157 NMVYQYRGMDLSMGSMICGWDK 178
>sp|P28063|PSB8_MOUSE Proteasome subunit beta type-8 OS=Mus musculus GN=Psmb8 PE=1 SV=2
Length = 276
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 97/140 (69%), Gaps = 6/140 (4%)
Query: 28 APSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
AP +LP F ++ ++ A GTTTLAF F+ GV+VA DSRA+ G YI
Sbjct: 39 APELALPRGMQPTAFLRSFGGDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
SS + K+IEINPY+LGTM+G AADCQ+W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 SSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDE 161
+ YRGMGLS+G+MI GWD+
Sbjct: 159 MLQYRGMGLSMGSMICGWDK 178
>sp|Q3T112|PSB8_BOVIN Proteasome subunit beta type-8 OS=Bos taurus GN=PSMB8 PE=1 SV=2
Length = 276
Score = 150 bits (380), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 98/140 (70%), Gaps = 6/140 (4%)
Query: 28 APSFSLPLSTDFDEF------QKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYI 81
+P +LP EF ++K ++ A GTTTLAF F+ GV+VA DSRAS G YI
Sbjct: 39 SPELALPRGMQPTEFFRSLGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYI 98
Query: 82 SSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANI 141
++ V K+IEINPY+LGTM+G AADC +W R L +CRL+ L N RISV+ ASKLL+N+
Sbjct: 99 ATLKVNKVIEINPYLLGTMSGCAADCLYWERLLAKECRLYYLRNGERISVSAASKLLSNM 158
Query: 142 LYSYRGMGLSVGTMIAGWDE 161
+ YRGMGLS+G+MI GWD+
Sbjct: 159 MCQYRGMGLSMGSMICGWDK 178
>sp|A5LHX3|PSB11_HUMAN Proteasome subunit beta type-11 OS=Homo sapiens GN=PSMB11 PE=2 SV=1
Length = 300
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 23 PELSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYIS 82
P L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 19 PHLPRAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVA 76
Query: 83 SQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANIL 142
+ K+I ++ ++LGT +G +ADC W+R L + RL EL + SV A+KLL+ ++
Sbjct: 77 CPASCKVIPVHQHLLGTTSGTSADCATWYRVLQRELRLRELREGQLPSVASAAKLLSAMM 136
Query: 143 YSYRGMGLSVGTMIAGWDETVREFMF 168
YRG+ L V T + GWD + E +
Sbjct: 137 SQYRGLDLCVATALCGWDRSGPELFY 162
>sp|Q8BG41|PSB11_MOUSE Proteasome subunit beta type-11 OS=Mus musculus GN=Psmb11 PE=1 SV=1
Length = 302
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 83/138 (60%), Gaps = 2/138 (1%)
Query: 25 LSAAPSFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQ 84
L A +++P D F + L H GTTTLAF F+ GV+ AAD+R+S G Y++
Sbjct: 21 LPQAGGWAVPRGCDPQTFLQIHGPRLAH--GTTTLAFRFRHGVIAAADTRSSCGSYVACP 78
Query: 85 SVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYS 144
+ +K+I ++ +LGT +G +ADC W+R L + RL EL + SV G +KLLA ++
Sbjct: 79 ASRKVIPVHQRLLGTTSGTSADCATWYRVLRRELRLRELREGQLPSVAGTAKLLAAMMSC 138
Query: 145 YRGMGLSVGTMIAGWDET 162
YRG+ L V T + GWD +
Sbjct: 139 YRGLDLCVATALCGWDHS 156
>sp|Q2FQL8|PSB_METHJ Proteasome subunit beta OS=Methanospirillum hungatei (strain JF-1 /
DSM 864) GN=psmB PE=3 SV=1
Length = 209
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 69/109 (63%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +F+ GV++A++ RA+MG IS+++ KKI +I P + T AGG D Q R
Sbjct: 9 KGTTTVGIVFETGVVLASEKRATMGYLISNKTAKKIYQIAPRIGLTTAGGVGDAQQLARL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
+ ++ L+E+ +RISV AS LL+NIL+ R V +I G DET
Sbjct: 69 MTVEANLYEIRRGKRISVQAASTLLSNILHGNRMFPFYVQLLIGGVDET 117
>sp|B8GG66|PSB_METPE Proteasome subunit beta OS=Methanosphaerula palustris (strain ATCC
BAA-1556 / DSM 19958 / E1-9c) GN=psmB PE=3 SV=1
Length = 211
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 65/109 (59%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ +FK+G+++A + RA+MG I+S+ KK+ ++ + T AGG D Q R
Sbjct: 8 KGTTTIGIVFKDGIILATEKRATMGSMIASKRAKKVYQVADRIGMTTAGGVGDAQQLARI 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
+ ++C L+++ R ISV +S LL+N L RG V ++ G D T
Sbjct: 68 MSVECNLYQIRRGRSISVGASSTLLSNYLNQNRGYPYYVQLLVGGVDAT 116
>sp|Q9P996|PSB_ARCFU Proteasome subunit beta OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmB PE=1 SV=1
Length = 213
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + K+GV++A + RA+MG +I+S++ KKI +I M T AG D QF R
Sbjct: 10 KGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARI 69
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
+ I+ L+E+ +R+ +V + L +N+L SYR V +I G D
Sbjct: 70 IKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGID 116
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%)
Query: 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109
L+ KGTTT+ +F++ V++AAD RA+ G +++ + KKII+I YM T AG AD Q
Sbjct: 10 LRALKGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQM 69
Query: 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREF 166
L +E+ NKRR+S+ A++ L+ IL+S + V ++ G+D R +
Sbjct: 70 LAEWLANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYDTQPRLY 126
>sp|A3CUS9|PSB_METMJ Proteasome subunit beta OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=psmB PE=3 SV=1
Length = 214
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ IF GV++A + RA+MG I+S+ KKI +I P + T AGG D Q R
Sbjct: 10 KGTTTVGLIFDGGVVLATEMRATMGNMIASKRAKKIYQITPRIGLTTAGGVGDAQQLVRI 69
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
L ++C L E+ + +SV AS LL+N L R V ++ G+D+
Sbjct: 70 LQVECNLFEMRRGKTMSVGAASTLLSNYLNQNRYYPYYVQLLMGGFDD 117
>sp|A8AB58|PSB2_IGNH4 Proteasome subunit beta 2 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB2 PE=3 SV=1
Length = 212
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 68/111 (61%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ ++ V++AAD RA+ G +I + V+KI++I+ YM T AG AD Q
Sbjct: 12 KGTTTVGIRSEKAVVLAADKRATAGNFIVHKRVEKIVKISDYMAMTTAGLVADAQVLADV 71
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVR 164
L ++ + +EL +K+R+SV A+ L+N+L+S R V ++ G+D R
Sbjct: 72 LRMEVKNYELFHKKRMSVKAAATFLSNVLHSARFYPYIVQLLVGGFDTAPR 122
>sp|D5EAS6|PSB_METMS Proteasome subunit beta OS=Methanohalophilus mahii (strain ATCC
35705 / DSM 5219 / SLP) GN=psmB PE=3 SV=1
Length = 210
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 68/112 (60%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCSDGVVLATEKRATMGNFIASKTAKKIYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
R + ++ +L+++ + I++ G + LL+NIL R L V ++ G D+
Sbjct: 65 VRMISVESKLYKMRRQESITIKGLTTLLSNILGGQRYFPLMVQLLVGGVDKN 116
>sp|B1L6S7|PSB1_KORCO Proteasome subunit beta 1 OS=Korarchaeum cryptofilum (strain OPF8)
GN=psmB1 PE=3 SV=1
Length = 206
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ FK GV+VA+D RA+ G +++S+S K ++I Y + T++G AD Q+ N
Sbjct: 4 KGTTTVGVKFKNGVIVASDKRATSGTFVASKSAVKTLKITDYAVATISGLVADGQYLVNN 63
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
+ L+ L +R +SV G +++LA +L YR L ++ G D
Sbjct: 64 VRTIADLYSLDTERPLSVRGIARILAFLLRRYRPYFLLAQLIVGGVDR 111
>sp|Q9YER0|PSB2_AERPE Proteasome subunit beta 2 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB2 PE=3
SV=2
Length = 219
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 69/117 (58%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ I + V++AAD RA+ G I+S+ VKKI+ ++ Y+ T++G AD Q L
Sbjct: 25 GTTTVGLIASDHVILAADKRATAGFLIASRRVKKIVMLSNYVAMTVSGLVADAQILSDVL 84
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVF 171
+ RL+E+ NK + SV + LL+NIL+S + V ++ G+D R + +F
Sbjct: 85 REEIRLYEMTNKVKPSVRFVASLLSNILFSSKFFPYIVQLIVGGYDTQPRLYTLDLF 141
>sp|D2RGT4|PSB_ARCPA Proteasome subunit beta OS=Archaeoglobus profundus (strain DSM 5631
/ JCM 9629 / NBRC 100127 / Av18) GN=psmB PE=3 SV=1
Length = 215
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ + K+GV++A + RA+MG +I+S+ KKI I + T AG D QF
Sbjct: 8 KVYKGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYRIADRVAMTTAGAVGDAQFL 67
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
R + ++ +L+E+ + + +V + LL+NIL S R V ++ G D+
Sbjct: 68 ARLISVEIKLYEIRKEEKPTVKAIATLLSNILNSVRWFPYFVQLLVGGVDK 118
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG I+ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRA 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQV 170
L + RL+++ + IS + LL+NIL+S R +I G+D T +F +
Sbjct: 65 LIAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSL 121
>sp|A8AA46|PSB1_IGNH4 Proteasome subunit beta 1 OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=psmB1 PE=3 SV=1
Length = 198
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
G T + K+GV++AA+ R S GG+I S++ +K+ ++ M AG AD Q R L
Sbjct: 5 GATAVGIKVKDGVVLAAERRMSYGGFIMSKAARKVFKVGDRMGMACAGLYADMQAIARAL 64
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFA 174
+ R +E++NKR++ V A++LL ILYS + L T+ G+D+ R F+
Sbjct: 65 ENEIRYYEISNKRKMKVRSAARLLGLILYSNKLFPLMTETVFGGYDDEPRIFVLD----P 120
Query: 175 FASLIASLLSCLSVGC 190
S+I S + G
Sbjct: 121 VGSVIEEKYSAVGTGA 136
>sp|Q12YV7|PSB_METBU Proteasome subunit beta OS=Methanococcoides burtonii (strain DSM
6242) GN=psmB PE=3 SV=1
Length = 210
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
KH KGTTT+ + +GV++A + RA+MG +I+S++ KKI +I+ + T AG D Q
Sbjct: 5 KHLKGTTTVGIVCTDGVVLATEQRATMGHFIASKTAKKIYQIDDLVGMTTAGSVGDAQQI 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
R + ++ +L ++ + I++ G + LL+N+L R L V +I G D+
Sbjct: 65 VRIISVESKLFKMRRQESITIKGITTLLSNMLSGQRYYPLMVQLLIGGVDKN 116
>sp|A7I841|PSB_METB6 Proteasome subunit beta OS=Methanoregula boonei (strain 6A8)
GN=psmB PE=3 SV=1
Length = 213
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ +I + T+AGG D Q R +
Sbjct: 11 GTTTVGLVFAGGVILATEKRATMGYMIASKRAKKVYQIADRIGMTIAGGVGDAQQLARII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
++C L+++ R I+V AS LL+N L R V ++ G D+
Sbjct: 71 TVECNLYQIRRSREITVGAASTLLSNYLNQNRYFPYYVQLLVGGIDD 117
>sp|D3RX66|PSB_FERPA Proteasome subunit beta OS=Ferroglobus placidus (strain DSM 10642 /
AEDII12DO) GN=psmB PE=3 SV=1
Length = 210
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 63/109 (57%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + K+GV++A + RA+MG +I+S+ KKI +I + T AG D QF R
Sbjct: 8 KGTTTVGLVCKDGVVLATEKRATMGNFIASRRAKKIYKITDRIAMTTAGSVGDAQFLARL 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
+ ++ L+ + + +V + L++N+L S R V +I G D+T
Sbjct: 68 IKVETNLYTIRKEEEPTVKAVATLVSNLLNSVRYFPYLVQLLIGGVDKT 116
>sp|O27270|PSB_METTH Proteasome subunit beta OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmB PE=3 SV=1
Length = 210
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 64/109 (58%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ K+GV+ A + RASMG I+ ++ KI +I+ ++ T+AG AD Q +
Sbjct: 8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKY 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
L + L+ + N +IS+ A+ L ANIL+S R V T++ G DE
Sbjct: 68 LKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDEN 116
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 61/107 (57%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RASMG ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
L + +L+++ + IS + LL+NIL+S R +I G+D
Sbjct: 65 LTAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYD 111
>sp|A2SS78|PSB_METLZ Proteasome subunit beta OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=psmB PE=3 SV=1
Length = 212
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%)
Query: 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 114
GTTT+ +F GV++A + RA+MG I+S+ KK+ I + T+AGG D Q R +
Sbjct: 11 GTTTVGIVFDGGVILATERRATMGNLIASKKAKKVHAITDKIGMTIAGGVGDAQQLVRII 70
Query: 115 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
++C L+E+ ++ISV A+ +L+N L R V ++ G D
Sbjct: 71 NVECNLYEIRRGQKISVGAAATILSNYLNQNRFSPYYVQLLVGGVD 116
>sp|Q46G14|PSB_METBF Proteasome subunit beta OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmB PE=3 SV=1
Length = 211
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 68/112 (60%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGNFIASKTAKKVYQIDDLVAMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
R + ++ +L+++ +++ G + L++N L S R + V +I G D+
Sbjct: 65 VRLVNVESQLYKMRRNESMTIKGIATLMSNFLNSNRYYPMMVQLLIGGVDKN 116
>sp|Q0W2D6|PSB_UNCMA Proteasome subunit beta OS=Uncultured methanogenic archaeon RC-I
GN=psmB PE=3 SV=1
Length = 208
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 60/111 (54%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K KGTTT+ I +GV++A + RA+MG +I+S+ +KI I T+AG D Q
Sbjct: 5 KQYKGTTTIGIICDQGVVLATERRATMGNFIASRDAQKIYRITDNAAMTIAGSVGDGQRL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDE 161
R L ++ +L EL +S+ S LL+NIL R V +I G D+
Sbjct: 65 ARILQVEAKLFELRRHGSMSINALSMLLSNILAEMRYAPYYVQVLIGGLDK 115
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
L + +L+++ R I + LL+NIL+S R +I G+D
Sbjct: 65 LTAEAKLYKMRTGRNIPPLACATLLSNILHSSRVFPFLTQIIIGGYD 111
>sp|A4YIE0|PSB1_METS5 Proteasome subunit beta 1 OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=psmB1 PE=3 SV=1
Length = 217
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 39 FDEFQ-KDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYML 97
F EF+ + +K +K KGTTT+ + K+ V++AAD RAS G +++++ V+KI+ I+ +
Sbjct: 4 FGEFESRPSKDKIKILKGTTTVGLVVKDAVILAADRRASAGFFVANKMVRKIVYIDDRIG 63
Query: 98 GTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIA 157
T AG AD QF + + + ++ R ++V + L NIL + V ++
Sbjct: 64 MTTAGSVADLQFIYNYMKNIYHYNLISGNRPVTVKSLATYLTNILSQNKYFPYLVQILMG 123
Query: 158 GWDETVREF 166
G+D R F
Sbjct: 124 GYDTQPRLF 132
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ I + V++A D RAS+G ++ + KK+ +I+ Y+ T+AG D Q R
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
L + +L+++ R I + LL+NIL+S R +I G+D
Sbjct: 65 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYD 111
>sp|A6UT20|PSB_META3 Proteasome subunit beta OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=psmB PE=3 SV=1
Length = 217
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
++ KGTTT+ + +G+++A D RA+MG I+ + KK+ +I+ YM T+AG D Q
Sbjct: 10 EYMKGTTTVGIVCNDGIVLATDKRATMGNLIADKEAKKLYKIDDYMAMTIAGSVGDAQSL 69
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
R + + L++L I + LL+N+L+ R + +I G+D
Sbjct: 70 VRIISAEANLYKLRTGNNIPPHSCAMLLSNVLHGSRHFPFLIQLIIGGYD 119
>sp|A4FYA5|PSB_METM5 Proteasome subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmB PE=3 SV=1
Length = 219
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 64/110 (58%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
++ KGTTT+ + K+GV++A D RA+MG I+ + KK+ +I+ Y+ T+AG D Q
Sbjct: 10 EYMKGTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSL 69
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
R + + ++H++ ++ + L++N+L+ R L ++ G+D
Sbjct: 70 IRIISAEAKIHKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYD 119
>sp|A5UM14|PSB_METS3 Proteasome subunit beta OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=psmB PE=3 SV=1
Length = 204
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
+GTTT+ K+GV+ A++ RASMG ++ + +KI +IN +++ T+AG D Q +
Sbjct: 7 EGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKINDHIVTTIAGSVGDAQNLMKI 66
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
+ + L+++ N +ISV A+ + ANIL R + V T++ G D
Sbjct: 67 IEAEVSLYQMRNNDKISVKAAASVTANIL---RSGPMYVQTLLGGMD 110
>sp|D3E0A3|PSB_METRM Proteasome subunit beta OS=Methanobrevibacter ruminantium (strain
ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=psmB PE=3
SV=1
Length = 207
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
+GTTT+ K+GV+ A++ RASMG ++ + +KI +I+ ++ T+AG AD Q +
Sbjct: 8 EGTTTVGITCKDGVVFASERRASMGNLVAHKVAEKIFKIDNHIAATIAGSVADAQTLMKV 67
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
+ + L+ L N + IS+ A+ + +NIL+S V T+I G D+T
Sbjct: 68 ISAETSLYRLRNGKDISLEAAAAVSSNILHSSPAY---VQTLIGGVDDT 113
>sp|Q8TW10|PSB_METKA Proteasome subunit beta OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=psmB PE=3 SV=1
Length = 210
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRN 113
KGTTT+ + +GV++AAD RA MG I+ + VKKI I+ Y+ T AG AD Q
Sbjct: 9 KGTTTVGILADKGVVLAADRRAVMGNLIAGKQVKKIFRIHDYIGVTTAGSVADAQKIVDL 68
Query: 114 LGIKCRLHELANKRRISVTGASKLLANILYS 144
+ + RL+EL + R IS + +++++L+S
Sbjct: 69 MRAEARLYELRHNRMISARALANMISHVLHS 99
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 68/112 (60%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
R + ++ +L+++ +++ G + L++N L + R + V +I G D+
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKN 116
>sp|A6USJ3|PSB_METVS Proteasome subunit beta OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=psmB PE=3 SV=1
Length = 219
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 63/110 (57%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
++ KGTTT+ I ++GV++A D RA+MG I+ + KK+ +I+ Y+ T+AG D Q
Sbjct: 10 EYMKGTTTVGLICEDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSL 69
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD 160
R L + +++++ ++ + L +N+L+ R L +I G+D
Sbjct: 70 IRLLSAEAKIYKMRTGNNMTPLSCTTLTSNVLHGNRHYPLLTQLIIGGYD 119
>sp|Q8TJB5|PSB_METAC Proteasome subunit beta OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmB PE=3 SV=1
Length = 210
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 68/112 (60%)
Query: 51 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110
K+ KGTTT+ + +G+++A++ RA+MG +I+S++ KK+ +I+ + T AG D Q
Sbjct: 5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQL 64
Query: 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET 162
R + ++ +L+++ +++ G + L++N L + R + V +I G D+
Sbjct: 65 VRLVSVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKN 116
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,161,423
Number of Sequences: 539616
Number of extensions: 4063855
Number of successful extensions: 11542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 11210
Number of HSP's gapped (non-prelim): 359
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)