Query 022125
Match_columns 302
No_of_seqs 223 out of 1779
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 08:13:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0175 20S proteasome, regula 100.0 4.5E-42 9.7E-47 313.0 14.9 198 31-232 41-264 (285)
2 cd03761 proteasome_beta_type_5 100.0 1.5E-37 3.2E-42 274.9 21.0 154 56-212 1-155 (188)
3 PTZ00488 Proteasome subunit be 100.0 3.8E-37 8.2E-42 284.5 23.8 182 28-212 5-194 (247)
4 cd03757 proteasome_beta_type_1 100.0 1.7E-37 3.6E-42 279.7 20.7 161 39-211 1-172 (212)
5 COG0638 PRE1 20S proteasome, a 100.0 2.5E-37 5.4E-42 283.8 20.5 162 49-213 23-188 (236)
6 cd03759 proteasome_beta_type_3 100.0 4.9E-37 1.1E-41 273.0 20.9 156 54-212 2-160 (195)
7 TIGR03634 arc_protsome_B prote 100.0 9.8E-37 2.1E-41 267.7 20.9 155 55-212 1-156 (185)
8 cd03750 proteasome_alpha_type_ 100.0 2.9E-36 6.2E-41 274.1 19.3 158 49-210 21-183 (227)
9 cd03752 proteasome_alpha_type_ 100.0 4.3E-36 9.2E-41 270.3 20.1 160 49-211 23-188 (213)
10 cd03751 proteasome_alpha_type_ 100.0 3.8E-36 8.3E-41 271.4 19.5 158 49-210 24-186 (212)
11 cd03760 proteasome_beta_type_4 100.0 7.3E-36 1.6E-40 265.6 20.6 155 54-211 1-162 (197)
12 cd03755 proteasome_alpha_type_ 100.0 5.3E-36 1.2E-40 268.6 19.4 159 49-211 21-185 (207)
13 cd03764 proteasome_beta_archea 100.0 2E-35 4.4E-40 260.3 21.4 154 56-212 1-155 (188)
14 cd03756 proteasome_alpha_arche 100.0 1.1E-35 2.3E-40 267.1 18.7 158 49-210 22-184 (211)
15 cd03758 proteasome_beta_type_2 100.0 2.1E-35 4.5E-40 262.4 19.3 153 56-211 2-158 (193)
16 TIGR03690 20S_bact_beta protea 100.0 5.5E-35 1.2E-39 264.7 21.7 155 54-211 1-162 (219)
17 cd03763 proteasome_beta_type_7 100.0 7.3E-35 1.6E-39 257.4 21.4 152 56-211 1-153 (189)
18 cd03762 proteasome_beta_type_6 100.0 7.6E-35 1.7E-39 256.6 21.2 153 56-212 1-155 (188)
19 cd03753 proteasome_alpha_type_ 100.0 4.9E-35 1.1E-39 263.2 19.3 160 49-212 21-190 (213)
20 cd03749 proteasome_alpha_type_ 100.0 8.9E-35 1.9E-39 261.8 19.3 158 49-212 21-185 (211)
21 TIGR03633 arc_protsome_A prote 100.0 1.2E-34 2.5E-39 262.6 19.1 158 49-210 23-185 (224)
22 cd01911 proteasome_alpha prote 100.0 1.7E-34 3.7E-39 258.8 19.0 158 49-210 21-184 (209)
23 PRK03996 proteasome subunit al 100.0 2E-34 4.3E-39 263.9 18.7 160 49-212 30-194 (241)
24 cd01912 proteasome_beta protea 100.0 1E-33 2.3E-38 248.4 20.8 154 56-212 1-156 (189)
25 PTZ00246 proteasome subunit al 100.0 4.4E-34 9.5E-39 263.8 19.3 162 49-213 25-192 (253)
26 cd03754 proteasome_alpha_type_ 100.0 6.4E-34 1.4E-38 257.1 18.9 158 49-210 22-190 (215)
27 cd01906 proteasome_protease_Hs 100.0 4.7E-33 1E-37 241.6 20.3 154 56-212 1-158 (182)
28 KOG0176 20S proteasome, regula 100.0 1E-33 2.2E-38 250.5 13.4 179 49-250 28-216 (241)
29 PF00227 Proteasome: Proteasom 100.0 2.1E-32 4.5E-37 239.1 21.4 158 52-212 1-166 (190)
30 cd03765 proteasome_beta_bacter 100.0 9.6E-32 2.1E-36 247.3 20.0 153 56-213 1-174 (236)
31 TIGR03691 20S_bact_alpha prote 100.0 9.9E-32 2.1E-36 245.8 19.1 164 38-212 8-181 (228)
32 KOG0174 20S proteasome, regula 100.0 2E-32 4.3E-37 241.6 11.3 159 50-213 14-175 (224)
33 KOG0177 20S proteasome, regula 100.0 1.2E-31 2.5E-36 235.7 14.7 169 56-242 2-174 (200)
34 KOG0179 20S proteasome, regula 100.0 8.3E-31 1.8E-35 233.6 14.8 165 30-206 13-180 (235)
35 KOG0184 20S proteasome, regula 100.0 2.9E-28 6.3E-33 219.0 15.5 161 49-213 28-193 (254)
36 KOG0173 20S proteasome, regula 100.0 1.9E-28 4.2E-33 223.3 14.4 172 38-213 13-192 (271)
37 KOG0178 20S proteasome, regula 100.0 6E-28 1.3E-32 215.6 13.6 163 49-213 25-193 (249)
38 KOG0180 20S proteasome, regula 100.0 1.6E-27 3.4E-32 207.4 15.3 171 53-227 6-186 (204)
39 KOG0181 20S proteasome, regula 100.0 2.8E-28 6E-33 215.6 10.1 158 49-210 26-188 (233)
40 PRK05456 ATP-dependent proteas 99.9 1.5E-26 3.2E-31 203.7 17.4 142 55-212 1-148 (172)
41 cd01901 Ntn_hydrolase The Ntn 99.9 1.5E-25 3.3E-30 186.7 19.9 155 56-213 1-158 (164)
42 KOG0183 20S proteasome, regula 99.9 4.1E-27 8.9E-32 210.7 10.8 161 49-213 24-192 (249)
43 cd01913 protease_HslV Protease 99.9 4.6E-26 9.9E-31 200.5 16.4 139 56-207 1-145 (171)
44 KOG0182 20S proteasome, regula 99.9 1.1E-25 2.3E-30 201.3 15.8 184 49-256 29-222 (246)
45 TIGR03692 ATP_dep_HslV ATP-dep 99.9 2.9E-25 6.2E-30 195.4 15.8 137 56-205 1-143 (171)
46 KOG0185 20S proteasome, regula 99.9 1.8E-24 3.9E-29 195.8 13.6 158 49-210 35-201 (256)
47 KOG0863 20S proteasome, regula 99.9 3.1E-23 6.7E-28 187.5 13.2 159 49-213 26-191 (264)
48 COG5405 HslV ATP-dependent pro 99.1 4.4E-10 9.6E-15 97.8 8.8 145 53-210 2-152 (178)
49 COG3484 Predicted proteasome-t 98.4 2.6E-06 5.7E-11 77.0 11.1 164 56-224 2-188 (255)
50 PF09894 DUF2121: Uncharacteri 89.0 7.8 0.00017 35.3 11.5 121 56-213 2-154 (194)
51 KOG3361 Iron binding protein i 50.7 13 0.00029 32.1 2.5 40 174-213 74-115 (157)
52 PF05046 Img2: Mitochondrial l 40.0 44 0.00094 26.3 3.8 25 277-301 63-87 (87)
53 COG4079 Uncharacterized protei 32.2 1.4E+02 0.0029 28.6 6.2 55 56-141 2-56 (293)
54 PF06309 Torsin: Torsin; Inte 23.9 2.3E+02 0.0051 24.0 5.8 101 105-244 14-117 (127)
No 1
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-42 Score=313.02 Aligned_cols=198 Identities=47% Similarity=0.705 Sum_probs=185.4
Q ss_pred CCCCCCCCcchhHhhh------hhhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecCh
Q 022125 31 FSLPLSTDFDEFQKDT------KATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGA 104 (302)
Q Consensus 31 ~~~p~~~~~~~~~~~~------~~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~ 104 (302)
+++|+..+|.+|++.. .....+.+|||++|+||++|||+|+|+|+|.|++|.+++++||++||++++.++||.+
T Consensus 41 ~~~P~~~~p~~~l~~~~~~~~~~~~i~~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgA 120 (285)
T KOG0175|consen 41 LALPPGESPQTFLFAITDDETAGVLIKFAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGA 120 (285)
T ss_pred ccCCCCCCchhhhhhccCCCcccceeeecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcc
Confidence 8899999999999742 2255789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccc-cc-ce
Q 022125 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASL-IA-SL 182 (302)
Q Consensus 105 aD~q~l~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~-~~-~~ 182 (302)
||||+|.+.|.++|++|+++|++.|+|.+++++|||++|+||++.+.++++|||||+.||+|||+| +-|+ .. +.
T Consensus 121 ADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~GP~lyYVD----seG~Rl~G~~ 196 (285)
T KOG0175|consen 121 ADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKGPGLYYVD----SEGTRLSGDL 196 (285)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCcchhheeeEeeccCCCCceEEEc----CCCCEecCce
Confidence 999999999999999999999999999999999999999999999999999999999999999985 4444 43 89
Q ss_pred eEecchhhhHHHHHHhhccCCCCHHHHhhhh------------------hhhccccccccccchhhHH
Q 022125 183 LSCLSVGCRVLGCIMWTVKEGGSKEHGSLWD------------------QVHHMLMVYWTAGTSLTCL 232 (302)
Q Consensus 183 ~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l~------------------~~~~~~~~~w~~~~~~~~l 232 (302)
.+.|||+.+++|+|+..||+|||.+||..|. .|+|+.+.+|....-.||-
T Consensus 197 FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edGW~~v~~~Dv~ 264 (285)
T KOG0175|consen 197 FSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDGWVKVSNTDVS 264 (285)
T ss_pred EeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCccceecCCccHH
Confidence 9999999999999999999999999999997 6899999999998888886
No 2
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-37 Score=274.89 Aligned_cols=154 Identities=55% Similarity=0.834 Sum_probs=146.6
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|+++++||+.+|++.+++++|.+++.|+++++++|+++.+|
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.+|++||+|++||||||++||+||++| +.|+... ++.++|+|+.+++++||+.|+|+||.+||+.+
T Consensus 81 ~~ls~~l~~~~~~~~~v~~li~G~D~~g~~L~~~d---p~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 81 KLLSNMLYQYKGMGLSMGTMICGWDKTGPGLYYVD---SDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEc---CCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999986 3555554 89999999999999999999999999999833
No 3
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=3.8e-37 Score=284.50 Aligned_cols=182 Identities=44% Similarity=0.713 Sum_probs=166.2
Q ss_pred CCCCCCCCCCCcchhHhhhh----h---hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEE
Q 022125 28 APSFSLPLSTDFDEFQKDTK----A---TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTM 100 (302)
Q Consensus 28 ~~~~~~p~~~~~~~~~~~~~----~---~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~ 100 (302)
+-.|+.|+...|.+|+.+.. + ...+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~ 84 (247)
T PTZ00488 5 PEHFEHPPGAHPGDFLAEYTFDHGDANKAIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTM 84 (247)
T ss_pred ccccccCCCCCHHHHHHHhhhccccCCcccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEe
Confidence 34688888888988887521 1 3378899999999999999999999999999999999999999999999999
Q ss_pred ecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc
Q 022125 101 AGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA 180 (302)
Q Consensus 101 SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~ 180 (302)
||+.+|++.+++++|.+++.|++++|++|+++.+|++|++++|.+|..|+.+++||||||++||+||++| +.|+...
T Consensus 85 sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~gp~Ly~vD---p~Gs~~~ 161 (247)
T PTZ00488 85 AGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYKGMGLSMGTMICGWDKKGPGLFYVD---NDGTRLH 161 (247)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCCCEEEEEc---CCcceee
Confidence 9999999999999999999999999999999999999999999999888999999999999999999986 3555554
Q ss_pred -ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 181 -SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 181 -~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++|+|+.+++++||+.|++|||.+||+.+
T Consensus 162 ~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l 194 (247)
T PTZ00488 162 GNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDL 194 (247)
T ss_pred cCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHH
Confidence 89999999999999999999999999999843
No 4
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-37 Score=279.71 Aligned_cols=161 Identities=22% Similarity=0.193 Sum_probs=151.0
Q ss_pred cchhHhhhhhhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHH
Q 022125 39 FDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 118 (302)
Q Consensus 39 ~~~~~~~~~~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~ 118 (302)
|+||. ++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||..+|++.+.+.++.++
T Consensus 1 ~~~~~---------~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~ 71 (212)
T cd03757 1 FSPYT---------DNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARI 71 (212)
T ss_pred CCCcc---------CCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHH
Confidence 78888 899999999999999999999999999898999999999999999999999999999999999999
Q ss_pred HHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCC-CceeEEEeeecCcccccc-ceeEecchhhhHHHHH
Q 022125 119 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCI 196 (302)
Q Consensus 119 ~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~L 196 (302)
+.|++++|++|+++.+|+++++++|.+|.+||++++||||||++ ||+||++| ++|.... +++++|+|+.+++++|
T Consensus 72 ~~~~~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D---~~G~~~~~~~~a~G~g~~~~~~~L 148 (212)
T cd03757 72 KMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYD---PVGSYERETYSAGGSASSLIQPLL 148 (212)
T ss_pred HHHhHHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEc---CccCeeecCEEEEeecHHHHHHHH
Confidence 99999999999999999999999999988999999999999975 69999986 3454444 9999999999999999
Q ss_pred Hhhcc---------CCCCHHHHhh
Q 022125 197 MWTVK---------EGGSKEHGSL 211 (302)
Q Consensus 197 e~~yk---------~dmS~eEAi~ 211 (302)
|+.|+ |+||++||+.
T Consensus 149 e~~~~~~~~~~~~~~~ms~eea~~ 172 (212)
T cd03757 149 DNQVGRKNQNNVERTPLSLEEAVS 172 (212)
T ss_pred HHHHHhhccCcCCCCCCCHHHHHH
Confidence 99986 9999999983
No 5
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=283.80 Aligned_cols=162 Identities=30% Similarity=0.260 Sum_probs=152.6
Q ss_pred hcccccC-ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 49 TLKHAKG-TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 49 ~~av~~G-tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
.+++.+| +|+|||+++||||||+|+|.+++.++.+++++|||+|+|||+|++||+.+|+|.++++++.+++.|++++|+
T Consensus 23 ~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~ 102 (236)
T COG0638 23 LEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGE 102 (236)
T ss_pred HHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCC
Confidence 4566665 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHccC--CCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCC
Q 022125 128 RISVTGASKLLANILYSYRG--MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGG 204 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R~--rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dm 204 (302)
+|+++.+++++++++|.+++ |||+|++||||+|++||+||.+| |+|+... ++.++|+|+.+++++||+.|+++|
T Consensus 103 ~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~~~p~Ly~~D---p~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m 179 (236)
T COG0638 103 PISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDDGGPRLYSTD---PSGSYNEYKATAIGSGSQFAYGFLEKEYREDL 179 (236)
T ss_pred CCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcCCCCeEEEEC---CCCceeecCEEEEcCCcHHHHHHHHhhccCCC
Confidence 99999999999999999999 99999999999999889999997 4566665 799999999999999999999999
Q ss_pred CHHHHhhhh
Q 022125 205 SKEHGSLWD 213 (302)
Q Consensus 205 S~eEAi~l~ 213 (302)
+.+||+.+.
T Consensus 180 ~~eeai~la 188 (236)
T COG0638 180 SLEEAIELA 188 (236)
T ss_pred CHHHHHHHH
Confidence 999999665
No 6
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-37 Score=272.99 Aligned_cols=156 Identities=19% Similarity=0.156 Sum_probs=145.4
Q ss_pred cCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHH
Q 022125 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (302)
Q Consensus 54 ~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~ 133 (302)
+|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|++|+++++||..+|++.+++++|.+++.|+++++++|+++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 69999999999999999999999888777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCceeeEeEEEEcCC-CceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 134 ASKLLANILYSYRGMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 134 lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+|++|++++|.+|.+||+|++||||||++ ||+||++| ++|+... +++++|+|+.+++++||+.|+|+||.+||+
T Consensus 82 la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D---~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 158 (195)
T cd03759 82 FSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMD---LIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELF 158 (195)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEc---CCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999999999999999999965 69999986 3555443 599999999999999999999999999998
Q ss_pred hh
Q 022125 211 LW 212 (302)
Q Consensus 211 ~l 212 (302)
.+
T Consensus 159 ~l 160 (195)
T cd03759 159 ET 160 (195)
T ss_pred HH
Confidence 43
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.8e-37 Score=267.69 Aligned_cols=155 Identities=32% Similarity=0.387 Sum_probs=147.8
Q ss_pred CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 55 GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
|+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+.+++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 135 SKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 135 Ak~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
|++|++++|.++.|||+|++||||||++||+||++| +.|.... ++.++|+++.+++++||+.|+|+||++||+.+
T Consensus 81 a~~l~~~~~~~~~rP~~v~~ivaG~d~~g~~Ly~~d---~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l 156 (185)
T TIGR03634 81 ATLLSNILNSNRFFPFIVQLLVGGVDEEGPHLYSLD---PAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKL 156 (185)
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEEEeCCCCEEEEEC---CCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999986 3555554 89999999999999999999999999999833
No 8
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.9e-36 Score=274.07 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=148.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+ ++++.+++.+||++|++|+++++||..+|++.+++.+|.+++.|++++|++
T Consensus 21 ~~av~~G~t~igik~~dgVvlaad~~~~-~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (227)
T cd03750 21 LAAVSSGAPSVGIKAANGVVLATEKKVP-SPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEP 99 (227)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeecCC-ccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999999999999999999998 788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--c--CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSY--R--GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~--R--~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
|+++.++++|++++|.+ + .|||+|++||+|||++||+||.+| +.|+... +++++|+|+.+++++||+.|+++
T Consensus 100 ~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d---~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 176 (227)
T cd03750 100 IPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVD---PSGSYFTWKATAIGKNYSNAKTFLEKRYNED 176 (227)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEEC---CCCCEEeeeEEEECCCCHHHHHHHHhhccCC
Confidence 99999999999999765 3 489999999999998899999986 3555554 89999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
||++||+
T Consensus 177 ms~eeai 183 (227)
T cd03750 177 LELEDAI 183 (227)
T ss_pred CCHHHHH
Confidence 9999998
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.3e-36 Score=270.32 Aligned_cols=160 Identities=16% Similarity=0.130 Sum_probs=148.6
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++++++++||..+|++.+.+++|.+++.|+++++++
T Consensus 23 ~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 102 (213)
T cd03752 23 MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEP 102 (213)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 67999999999999999999999999998877777899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
|+++.+|++|+.+++.+ +.|||+|++||+|||+ .||+||.+| +.|.... +++++|+++.+++++||+.|+|
T Consensus 103 i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d---~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~ 179 (213)
T cd03752 103 IPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSD---PSGNYSGWKATAIGNNNQAAQSLLKQDYKD 179 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEEC---CCCCeeeeeEEEECCCcHHHHHHHHHhccC
Confidence 99999999999998776 3489999999999995 699999986 3555544 8999999999999999999999
Q ss_pred CCCHHHHhh
Q 022125 203 GGSKEHGSL 211 (302)
Q Consensus 203 dmS~eEAi~ 211 (302)
|||++||++
T Consensus 180 ~ms~eea~~ 188 (213)
T cd03752 180 DMTLEEALA 188 (213)
T ss_pred CCCHHHHHH
Confidence 999999983
No 10
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-36 Score=271.41 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=148.1
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.+++|.+++.|++++|++
T Consensus 24 ~~a~~~G~tvIgik~kdgVvla~d~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~ 102 (212)
T cd03751 24 NKAVENSGTAIGIRCKDGVVLAVEKLVT-SKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTP 102 (212)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEEcccc-ccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999999999999999999998 577777899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.++++|+++++.++ .|||+|++||||+|++||+||.+| +.|+... ++.++|+++.+++++||+.|++|
T Consensus 103 ~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D---~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~d 179 (212)
T cd03751 103 IPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIE---PSGVSYGYFGCAIGKGKQAAKTELEKLKFSE 179 (212)
T ss_pred CCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEEC---CCCCEEeeEEEEECCCCHHHHHHHHHhccCC
Confidence 999999999999998863 489999999999998899999986 3566555 89999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
||++||+
T Consensus 180 ms~eeai 186 (212)
T cd03751 180 LTCREAV 186 (212)
T ss_pred CCHHHHH
Confidence 9999998
No 11
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-36 Score=265.61 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=144.2
Q ss_pred cCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHH-HhhHhhCCcCCHH
Q 022125 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCR-LHELANKRRISVT 132 (302)
Q Consensus 54 ~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~-~y~l~~g~~isv~ 132 (302)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+++++++++|..+|++.+++++|.+++ .|+++++++|+++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999998999999999999999999999999999999999999999987 5668899999999
Q ss_pred HHHHHHHHHHHHcc--CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC--CCCH
Q 022125 133 GASKLLANILYSYR--GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE--GGSK 206 (302)
Q Consensus 133 ~lAk~Ls~~ly~~R--~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~--dmS~ 206 (302)
.+|+++++++|.+| .|||+|++||||||+ .||+||++| ++|.... ++.++|+++.+++++||+.|++ +||+
T Consensus 81 ~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D---~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVD---LLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEc---CCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 99999999999886 589999999999997 689999986 3455444 8999999999999999999999 9999
Q ss_pred HHHhh
Q 022125 207 EHGSL 211 (302)
Q Consensus 207 eEAi~ 211 (302)
+||+.
T Consensus 158 eea~~ 162 (197)
T cd03760 158 EEARA 162 (197)
T ss_pred HHHHH
Confidence 99983
No 12
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.3e-36 Score=268.62 Aligned_cols=159 Identities=17% Similarity=0.197 Sum_probs=147.2
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|+++++++
T Consensus 21 ~~av~~G~t~Igik~~dgVvlaad~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (207)
T cd03755 21 QEAVRKGTTAVGVRGKDCVVLGVEKKSV-AKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDP 99 (207)
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEecCCC-CcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCC
Confidence 7899999999999999999999999976 567888889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCC-CceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
|+++.+++++++++|.++ .|||+|++||||||++ ||+||++| +.|+... +++++|+++.+++++||+.|+|
T Consensus 100 i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD---~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~ 176 (207)
T cd03755 100 VTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTD---PSGTYSAWKANAIGRNSKTVREFLEKNYKE 176 (207)
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEEC---CCcCEEcceEEEECCCCHHHHHHHHhhccC
Confidence 999999999999997662 4799999999999975 99999986 3555554 8999999999999999999999
Q ss_pred CCCHHHHhh
Q 022125 203 GGSKEHGSL 211 (302)
Q Consensus 203 dmS~eEAi~ 211 (302)
+||.+||+.
T Consensus 177 ~ms~eeai~ 185 (207)
T cd03755 177 EMTRDDTIK 185 (207)
T ss_pred CCCHHHHHH
Confidence 999999993
No 13
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-35 Score=260.26 Aligned_cols=154 Identities=34% Similarity=0.387 Sum_probs=146.2
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.++|+++.+++.+||++|+++++++++|..+|++.+.+.++.+++.|+++++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.++.|||+|++||||+|++||+||.+| +.|+... ++.++|+|+.+++++|++.|+++||.+||+++
T Consensus 81 ~~i~~~~~~~~~~P~~~~~lvaG~d~~~~~ly~~D---~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 81 TLLSNILNSSKYFPYIVQLLIGGVDEEGPHLYSLD---PLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHhcCCCCcEEEEEEEEEeCCCCEEEEEC---CCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999999999999999999999899999986 3555554 89999999999999999999999999999833
No 14
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.1e-35 Score=267.13 Aligned_cols=158 Identities=22% Similarity=0.217 Sum_probs=148.4
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.+.++.+++.|+++++++
T Consensus 22 ~~av~~G~t~igik~~dgvvla~d~~~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~ 100 (211)
T cd03756 22 REAVKRGTTALGIKCKEGVVLAVDKRIT-SKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEP 100 (211)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7789999999999999999999999998 678888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.++++++++++.+ +.|||++++||||+|+.||+||.+| +.|.+.. +++++|+++.+++++|++.|+|+
T Consensus 101 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd---~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 177 (211)
T cd03756 101 IDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETD---PSGAYNEYKATAIGSGRQAVTEFLEKEYKED 177 (211)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEEC---CCCCeeeeEEEEECCCCHHHHHHHHhhccCC
Confidence 99999999999999776 3489999999999999999999986 3555554 89999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
|+.+||+
T Consensus 178 m~~~ea~ 184 (211)
T cd03756 178 MSLEEAI 184 (211)
T ss_pred CCHHHHH
Confidence 9999998
No 15
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-35 Score=262.36 Aligned_cols=153 Identities=18% Similarity=0.147 Sum_probs=143.1
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.|.++.+++++|||+|++++++++||..||++.++++++.+++.|++.++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-cC-CCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhh
Q 022125 136 KLLANILYSY-RG-MGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSL 211 (302)
Q Consensus 136 k~Ls~~ly~~-R~-rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~ 211 (302)
+++++++|.+ |. |||++++||||||+ .||+||++| ++|.... ++.++|+|+.+++++||+.|+|+||.+||+.
T Consensus 82 ~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d---~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 82 NFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYID---YLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEEC---CCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 9999999765 33 69999999999996 689999986 3555554 8999999999999999999999999999993
No 16
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=5.5e-35 Score=264.73 Aligned_cols=155 Identities=21% Similarity=0.221 Sum_probs=145.1
Q ss_pred cCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHH
Q 022125 54 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (302)
Q Consensus 54 ~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~ 133 (302)
+|+|+|||+++||||||+|+|.+.|+++.+++.+|||+|++|+++++||..+|++.+.+++|.+++.|+++++++|+++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcc---CCCceeeEeEEEEcC--CCceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCH
Q 022125 134 ASKLLANILYSYR---GMGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSK 206 (302)
Q Consensus 134 lAk~Ls~~ly~~R---~rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~ 206 (302)
+|++|++++|.++ .|||+|++||||||+ .||+||.+| ++|+.+. +++++|+|+.+++++||+.|+++||.
T Consensus 81 la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~D---p~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYD---VTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDE 157 (219)
T ss_pred HHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEe---CCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCH
Confidence 9999999998763 589999999999996 479999987 4565563 79999999999999999999999999
Q ss_pred HHHhh
Q 022125 207 EHGSL 211 (302)
Q Consensus 207 eEAi~ 211 (302)
+||+.
T Consensus 158 eeai~ 162 (219)
T TIGR03690 158 DDALR 162 (219)
T ss_pred HHHHH
Confidence 99983
No 17
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-35 Score=257.42 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=143.5
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+++++++++|..+|++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSL 211 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~ 211 (302)
++|++++|.++. ||+|++||||||++||+||.+| +.|+... ++.++|+++.+++++|++.|+|+||++||+.
T Consensus 81 ~~l~~~l~~~~~-p~~v~~ivaG~d~~g~~ly~~d---~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQG-HIGAALVLGGVDYTGPHLYSIY---PHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcCC-ccceeEEEEeEcCCCCEEEEEC---CCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 999999998765 9999999999999899999986 3455554 8999999999999999999999999999983
No 18
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.6e-35 Score=256.58 Aligned_cols=153 Identities=26% Similarity=0.339 Sum_probs=143.1
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++++++++||..+|++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.+| +||+|++||||+|+ +||+||++| +.|.... ++++.|+++.+++++|++.|+|+||++||+.+
T Consensus 81 ~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d---~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l 155 (188)
T cd03762 81 SLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIP---LGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKF 155 (188)
T ss_pred HHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEEC---CCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 99999999987 68999999999996 689999985 3444444 89999999999999999999999999999943
No 19
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-35 Score=263.19 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=148.2
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.+.++.+++.|+++++++
T Consensus 21 ~~a~~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 99 (213)
T cd03753 21 IEAIKLGSTAIGIKTKEGVVLAVEKRIT-SPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEP 99 (213)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEecccC-CcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999998 467778889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc---------CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHh
Q 022125 129 ISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMW 198 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R---------~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~ 198 (302)
|+++.+++++++++|.++ .|||+|++||||||++||+||.+| +.|.... ++.++|++++++.++|++
T Consensus 100 i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd---~~G~~~~~~~~a~G~~~~~~~~~L~~ 176 (213)
T cd03753 100 MTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTD---PSGTFTRCDAKAIGSGSEGAQSSLQE 176 (213)
T ss_pred CCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEEC---CCCCeecccEEEECCCcHHHHHHHHh
Confidence 999999999999998753 389999999999999999999986 3455444 899999999999999999
Q ss_pred hccCCCCHHHHhhh
Q 022125 199 TVKEGGSKEHGSLW 212 (302)
Q Consensus 199 ~yk~dmS~eEAi~l 212 (302)
.|+++||++||+++
T Consensus 177 ~~~~~ls~eeai~l 190 (213)
T cd03753 177 KYHKDMTLEEAEKL 190 (213)
T ss_pred hccCCCCHHHHHHH
Confidence 99999999999944
No 20
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.9e-35 Score=261.81 Aligned_cols=158 Identities=19% Similarity=0.140 Sum_probs=143.8
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+.+ + .++.+||++|++++++++||+.+|++.+.++++.+++.|+++++++
T Consensus 21 ~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 97 (211)
T cd03749 21 MEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSP 97 (211)
T ss_pred HHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 689999999999999999999999998744 3 4567999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc--
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK-- 201 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk-- 201 (302)
|+++.+|+.+++++|.+ +.|||+|++||+|||++||+||++| +.|.... ++.++|+++.+++++||+.|+
T Consensus 98 ~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~D---p~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~ 174 (211)
T cd03749 98 IPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTC---PSGNYFEYKATSIGARSQSARTYLERHFEEF 174 (211)
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEEC---CCcCEeeeeEEEECCCcHHHHHHHHHhhccc
Confidence 99999999999998865 3589999999999998899999986 3455544 899999999999999999999
Q ss_pred CCCCHHHHhhh
Q 022125 202 EGGSKEHGSLW 212 (302)
Q Consensus 202 ~dmS~eEAi~l 212 (302)
++||++|++++
T Consensus 175 ~~ms~ee~i~~ 185 (211)
T cd03749 175 EDCSLEELIKH 185 (211)
T ss_pred cCCCHHHHHHH
Confidence 69999999843
No 21
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-34 Score=262.58 Aligned_cols=158 Identities=20% Similarity=0.226 Sum_probs=148.4
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.+.++.++..|+++++++
T Consensus 23 ~~av~~G~tvigi~~~dgvvlaad~r~~-~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 101 (224)
T TIGR03633 23 REAVKRGTTAVGIKTKDGVVLAVDKRIT-SKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEP 101 (224)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeccCC-ccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCC
Confidence 6799999999999999999999999998 778888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|++|++++|.++ .|||+|++||||+|+.||+||.+| +.|+... +++++|+++.+++++|++.|+|+
T Consensus 102 ~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D---~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ 178 (224)
T TIGR03633 102 IDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETD---PSGALLEYKATAIGAGRQAVTEFLEKEYRED 178 (224)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEEC---CCCCeecceEEEECCCCHHHHHHHHHhccCC
Confidence 999999999999997763 479999999999998899999986 3555554 89999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
|+.+||+
T Consensus 179 ~~~eeai 185 (224)
T TIGR03633 179 LSLDEAI 185 (224)
T ss_pred CCHHHHH
Confidence 9999998
No 22
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.7e-34 Score=258.76 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=146.3
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+++++|+|+|||+++||||+|+|+|.+. .++..++.+||++|+++++++++|..+|++.+.+.++.+++.|++++|++
T Consensus 21 ~~~~~~G~tvigi~~~dgVvlaaD~~~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~ 99 (209)
T cd01911 21 LEAVKNGSTAVGIKGKDGVVLAVEKKVTS-KLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEP 99 (209)
T ss_pred HHHHHcCCCEEEEEECCEEEEEEEecCCc-cccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999995 56777899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEcCC-CceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
|+++.+|++++++++.+ +.|||+|++||+|+|++ ||+||.+| +.|+... +++++|+++.+++++|++.|+|
T Consensus 100 ~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD---~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~ 176 (209)
T cd01911 100 IPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTD---PSGTYFGYKATAIGKGSQEAKTFLEKRYKK 176 (209)
T ss_pred CCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEEC---CCCCeeeeeEEEeCCCcHHHHHHHHHhccc
Confidence 99999999999999765 24799999999999976 99999986 3555554 8999999999999999999999
Q ss_pred CCCHHHHh
Q 022125 203 GGSKEHGS 210 (302)
Q Consensus 203 dmS~eEAi 210 (302)
+||.+||+
T Consensus 177 ~ms~~ea~ 184 (209)
T cd01911 177 DLTLEEAI 184 (209)
T ss_pred CCCHHHHH
Confidence 99999998
No 23
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=2e-34 Score=263.95 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=149.6
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.++++++.+++.|+++++++
T Consensus 30 ~~av~~G~t~igik~~dgVvlaad~r~~-~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 108 (241)
T PRK03996 30 REAVKRGTTAVGVKTKDGVVLAVDKRIT-SPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEP 108 (241)
T ss_pred HHHHHhCCCEEEEEeCCEEEEEEeccCC-CcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999999999 778888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|+++++++|.++ .|||+|++||||+|++||+||.+| +.|.... +++++|+++.+++++|++.|+++
T Consensus 109 i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id---~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 185 (241)
T PRK03996 109 IGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETD---PSGAYLEYKATAIGAGRDTVMEFLEKNYKED 185 (241)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEEC---CCCCeecceEEEECCCcHHHHHHHHHhcccC
Confidence 999999999999998763 479999999999999899999986 3555554 89999999999999999999999
Q ss_pred CCHHHHhhh
Q 022125 204 GSKEHGSLW 212 (302)
Q Consensus 204 mS~eEAi~l 212 (302)
|+++||+.+
T Consensus 186 ~s~eeai~l 194 (241)
T PRK03996 186 LSLEEAIEL 194 (241)
T ss_pred CCHHHHHHH
Confidence 999999833
No 24
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1e-33 Score=248.42 Aligned_cols=154 Identities=35% Similarity=0.413 Sum_probs=145.5
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.+..+.+++.+|||+|++++++++||+.+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.++++||++++||||+|+ +||+||.+| +.|.... ++.++|+++.+++++|++.|+|+||.+||+++
T Consensus 81 ~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id---~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 81 NLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVD---PLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEEC---CCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999998 689999986 3555554 89999999999999999999999999999833
No 25
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.4e-34 Score=263.78 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=149.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.+.+|.+++.|+++++++
T Consensus 25 ~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 104 (253)
T PTZ00246 25 LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEP 104 (253)
T ss_pred HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999998888878889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
++++.+++.++++++.++ .|||+|++||||||+ .||+||++| +.|.+.. +++++|+++.+++++|++.|++
T Consensus 105 ~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D---~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~ 181 (253)
T PTZ00246 105 QPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTD---PSGNYSGWKATAIGQNNQTAQSILKQEWKE 181 (253)
T ss_pred CCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEEC---CCCCEecceEEEECCCcHHHHHHHHHhccC
Confidence 999999999999988763 489999999999995 689999986 3455554 8999999999999999999999
Q ss_pred CCCHHHHhhhh
Q 022125 203 GGSKEHGSLWD 213 (302)
Q Consensus 203 dmS~eEAi~l~ 213 (302)
+||++||+.+.
T Consensus 182 ~ms~eeai~l~ 192 (253)
T PTZ00246 182 DLTLEQGLLLA 192 (253)
T ss_pred CCCHHHHHHHH
Confidence 99999999554
No 26
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-34 Score=257.13 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=142.6
Q ss_pred hccccc-CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 49 TLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 49 ~~av~~-GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
++|+++ |+|+|||+++||||||+|+|.+. .++.+++.+||++|++++++++||+.+|++.+.+++|.+++.|++++++
T Consensus 22 ~~a~~~~g~t~igi~~~d~Vvlaad~r~~~-~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~ 100 (215)
T cd03754 22 FKAVKNAGLTSVAVRGKDCAVVVTQKKVPD-KLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGY 100 (215)
T ss_pred HHHHhcCCccEEEEEeCCEEEEEEeccccc-cccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCC
Confidence 778875 78999999999999999999984 5666668999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHc--c--CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc
Q 022125 128 RISVTGASKLLANILYSY--R--GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK 201 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~--R--~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk 201 (302)
+|+++.+|++++++++.+ + .|||+|++||||||+ +||+||.+| +.|.... +++++|+++.+++++||+.|+
T Consensus 101 ~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~D---p~Gs~~~~~~~a~G~gs~~~~~~Le~~~~ 177 (215)
T cd03754 101 EMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCD---PAGYFAGYKATAAGVKEQEATNFLEKKLK 177 (215)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEc---CCccEEeEEEEEECCCcHHHHHHHHHHhc
Confidence 999999999999986554 3 379999999999996 699999986 3455554 899999999999999999999
Q ss_pred CC--C--CHHHHh
Q 022125 202 EG--G--SKEHGS 210 (302)
Q Consensus 202 ~d--m--S~eEAi 210 (302)
++ | |.+||+
T Consensus 178 ~~~~~~~s~eeai 190 (215)
T cd03754 178 KKPDLIESYEETV 190 (215)
T ss_pred cccccCCCHHHHH
Confidence 95 7 999998
No 27
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.7e-33 Score=241.63 Aligned_cols=154 Identities=31% Similarity=0.298 Sum_probs=145.4
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.+..+.+++.+|||+|+++++++++|..+|++.+.+.++.++..|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccC--CCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhh
Q 022125 136 KLLANILYSYRG--MGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSL 211 (302)
Q Consensus 136 k~Ls~~ly~~R~--rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~ 211 (302)
+++++++|.+|. +||++++||||+|+ .||+||.+| +.|.... ++.++|+++.+++++|++.|+++||.+||+.
T Consensus 81 ~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id---~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 157 (182)
T cd01906 81 KLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVD---PSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIE 157 (182)
T ss_pred HHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEEC---CCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999987 99999999999997 799999986 3555554 8999999999999999999999999999984
Q ss_pred h
Q 022125 212 W 212 (302)
Q Consensus 212 l 212 (302)
+
T Consensus 158 l 158 (182)
T cd01906 158 L 158 (182)
T ss_pred H
Confidence 3
No 28
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-33 Score=250.50 Aligned_cols=179 Identities=21% Similarity=0.223 Sum_probs=162.5
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|++.|+|+|||+.++|||||+++|.+ +++..+.+++||++|++||+|++||+.||+++++++.|.+|++|.+.||++
T Consensus 28 ieAikLGsTaIGv~TkEgVvL~vEKrit-SpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~ 106 (241)
T KOG0176|consen 28 IEAIKLGSTAIGVKTKEGVVLAVEKRIT-SPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEP 106 (241)
T ss_pred HHHHhcCCceeeeeccceEEEEEecccc-CcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCc
Confidence 8899999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc---------CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHh
Q 022125 129 ISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMW 198 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R---------~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~ 198 (302)
|+++.+.+.++++...+. .|||||+++|||+|++||+||+.| |+|.++. ++-++|+|+.-+.+.|++
T Consensus 107 i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~d---PSGtf~~~~AKAIGSgsEga~~~L~~ 183 (241)
T KOG0176|consen 107 ISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLD---PSGTFIRYKAKAIGSGSEGAESSLQE 183 (241)
T ss_pred ccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeC---CCCceEEecceeccccchHHHHHHHH
Confidence 999999999999887652 289999999999999999999986 4555555 899999999999999999
Q ss_pred hccCCCCHHHHhhhhhhhccccccccccchhhHHHHHHHHHHHHhhhhcccC
Q 022125 199 TVKEGGSKEHGSLWDQVHHMLMVYWTAGTSLTCLLKKLRSWLEELFIMRHSE 250 (302)
Q Consensus 199 ~yk~dmS~eEAi~l~~~~~~~~~~w~~~~~~~~l~~~~r~~l~~~~~~~~~~ 250 (302)
.|+++||++||+ +. .++.|+.+.|+-...+.-|
T Consensus 184 e~~~~ltL~ea~-------------~~------~L~iLkqVMeeKl~~~Nve 216 (241)
T KOG0176|consen 184 EYHKDLTLKEAE-------------KI------VLKILKQVMEEKLNSNNVE 216 (241)
T ss_pred HHhhcccHHHHH-------------HH------HHHHHHHHHHHhcCccceE
Confidence 999999999998 22 4567788888877666544
No 29
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.1e-32 Score=239.07 Aligned_cols=158 Identities=26% Similarity=0.225 Sum_probs=141.4
Q ss_pred cccCceEEEEEeCCeEEEEEeCccCCCCeeeccc-cceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCC
Q 022125 52 HAKGTTTLAFIFKEGVMVAADSRASMGGYISSQS-VKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRIS 130 (302)
Q Consensus 52 v~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~-~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~is 130 (302)
|++|+|+|||+++|||+||+|+|.++|+.+..++ .+|||+|++++++++||..+|++.+.+.++.+++.|++.++++++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 5789999999999999999999999998886665 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH----HccCCCceeeEeEEEEcCCC-ceeEEEeeecCccccc-c-ceeEecchhhhHHHHHHhhccCC
Q 022125 131 VTGASKLLANILY----SYRGMGLSVGTMIAGWDETV-REFMFQVFCFAFASLI-A-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 131 v~~lAk~Ls~~ly----~~R~rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~-~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++.+++.+++.++ ..+.+|+++++|+||||++| |+||.+| +.|... . ++.++|+|+.+++++|++.|+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd---~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~ 157 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVD---PSGSYIECKRFAAIGSGSQFAQPILEKLYKPD 157 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEE---TTSEEEEBSSEEEESTTHHHHHHHHHHHHTTT
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeec---cccccccccccccchhcchhhhHHHHhhccCC
Confidence 9966666665554 44568999999999999875 9999986 456665 3 59999999999999999999999
Q ss_pred CCHHHHhhh
Q 022125 204 GSKEHGSLW 212 (302)
Q Consensus 204 mS~eEAi~l 212 (302)
||.+||+.+
T Consensus 158 ~~~~ea~~~ 166 (190)
T PF00227_consen 158 LSLEEAIEL 166 (190)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999833
No 30
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.6e-32 Score=247.25 Aligned_cols=153 Identities=17% Similarity=0.132 Sum_probs=134.5
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEec----CcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC-cCC
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN----PYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR-RIS 130 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~----~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~-~is 130 (302)
|-+|||+++||||||+|+|.+.+ ++..++.+||++|+ +|++|++||..||++.+++.+|.+++.|++++|+ +++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~ 79 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPT 79 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCC
Confidence 45899999999999999998855 44445799999998 9999999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHHH----cc------CCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-----ceeEecchhhhHHH
Q 022125 131 VTGASKLLANILYS----YR------GMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-----SLLSCLSVGCRVLG 194 (302)
Q Consensus 131 v~~lAk~Ls~~ly~----~R------~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-----~~~a~Gsgs~~a~g 194 (302)
++.+|+++++++++ +. .|||+|++|||||| +.||+||.+| |+|+... +|.++|. +.++++
T Consensus 80 v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~id---psG~~~e~~a~~~~~AiG~-~~~a~~ 155 (236)
T cd03765 80 MFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIY---PQGNFIEATPDTPFLQIGE-TKYGKP 155 (236)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEEC---CCCCEEeecCCCceeeeCC-chhhHH
Confidence 99999999998765 22 47999999999999 4699999996 3455443 5789996 799999
Q ss_pred HHHhhccCCCCHHHHhhhh
Q 022125 195 CIMWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 195 ~Le~~yk~dmS~eEAi~l~ 213 (302)
+||+.|+++||++||+++.
T Consensus 156 ~Lek~yk~~ms~eeai~la 174 (236)
T cd03765 156 ILDRVITPDTSLEDAAKCA 174 (236)
T ss_pred HHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999554
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=9.9e-32 Score=245.79 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=142.7
Q ss_pred CcchhHhhhhh--hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHH
Q 022125 38 DFDEFQKDTKA--TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 115 (302)
Q Consensus 38 ~~~~~~~~~~~--~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr 115 (302)
.|+....+.++ ++||++|+|+|||+++||||||+|++. ++.+||++|++|++|++||+.+|++.++++++
T Consensus 8 ~~~~~~~~~~EYA~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r 79 (228)
T TIGR03691 8 SPEQIMRDRAELARKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGI 79 (228)
T ss_pred CHHHHHhhHHHHHHHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHH
Confidence 34444443333 789999999999999999999999972 46899999999999999999999999999999
Q ss_pred HHHHHhhHhhC-CcCCHHHHHHHHHHHHHHc---cCCCceeeEeEEEEcC--CCceeEEEeeecCcccccc-c-eeEecc
Q 022125 116 IKCRLHELANK-RRISVTGASKLLANILYSY---RGMGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA-S-LLSCLS 187 (302)
Q Consensus 116 ~e~~~y~l~~g-~~isv~~lAk~Ls~~ly~~---R~rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~-~-~~a~Gs 187 (302)
.+++.|++.++ .+++++.+|+.+++.++.+ +.|||+|++||+|||+ +||+||.+| |+|+... . ++++|+
T Consensus 80 ~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vD---psG~~~~~~~~~aiG~ 156 (228)
T TIGR03691 80 RYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRIT---FDGSIVDERGFVVMGG 156 (228)
T ss_pred HHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEEC---CCCCceeccceEEECC
Confidence 99999999998 6899999999888877643 4589999999999984 689999997 3555554 4 899999
Q ss_pred hhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 188 VGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 188 gs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
++..++++||+.|+++||.+||+.+
T Consensus 157 gs~~a~~~Lek~y~~~ms~eeai~l 181 (228)
T TIGR03691 157 TTEPIATALKESYRDGLSLADALGL 181 (228)
T ss_pred ChHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999944
No 32
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2e-32 Score=241.62 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=150.5
Q ss_pred cccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcC
Q 022125 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 129 (302)
Q Consensus 50 ~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~i 129 (302)
+.+..|||++|++|+|||||++|+|.|.|.+|.++..+|+.+|+|+|+|+-||.+||.|.+.+.+++++..|..++++++
T Consensus 14 ~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p 93 (224)
T KOG0174|consen 14 EEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPP 93 (224)
T ss_pred cccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHccCCCceeeEeEEEEcCC-CceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCH
Q 022125 130 SVTGASKLLANILYSYRGMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSK 206 (302)
Q Consensus 130 sv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~ 206 (302)
++...|+.+++++|+||.. +..++|+||||+. |.+.|.| |.||+.. +++..||||.|++|+++..|||+||+
T Consensus 94 ~v~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~i----plGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 94 LVHTAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSI----PLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred hHHHHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEe----ecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 9999999999999999976 8899999999985 8887665 8999985 99999999999999999999999999
Q ss_pred HHHhhhh
Q 022125 207 EHGSLWD 213 (302)
Q Consensus 207 eEAi~l~ 213 (302)
||++.+-
T Consensus 169 EE~~~fv 175 (224)
T KOG0174|consen 169 EECVRFV 175 (224)
T ss_pred HHHHHHH
Confidence 9998544
No 33
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=235.68 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=154.2
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
.|++||++.|+|++|+||..+.|.++.+++.+|+++|+++++++++|..+|+.++.+++.+++++|+++||.++||+++|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-c-CCCceeeEeEEEEcCC-CceeEEEeeecCccccc-cceeEecchhhhHHHHHHhhccCCCCHHHHhh
Q 022125 136 KLLANILYSY-R-GMGLSVGTMIAGWDET-VREFMFQVFCFAFASLI-ASLLSCLSVGCRVLGCIMWTVKEGGSKEHGSL 211 (302)
Q Consensus 136 k~Ls~~ly~~-R-~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~-~~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~ 211 (302)
+++++.+..+ | .+||.|++++||||++ ||.||++|| .|... .||+++|.++.|++++|++.|+||||.+||+.
T Consensus 82 hFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDy---la~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~ 158 (200)
T KOG0177|consen 82 HFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDY---LATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALD 158 (200)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehh---hhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHH
Confidence 9999999876 6 5799999999999975 999999976 45544 39999999999999999999999999999983
Q ss_pred hhhhhccccccccccchhhHHHHHHHHHHHH
Q 022125 212 WDQVHHMLMVYWTAGTSLTCLLKKLRSWLEE 242 (302)
Q Consensus 212 l~~~~~~~~~~w~~~~~~~~l~~~~r~~l~~ 242 (302)
.-+.|..|..+|+.-+
T Consensus 159 ---------------lmkKCv~El~kRlvin 174 (200)
T KOG0177|consen 159 ---------------LMKKCVLELKKRLVIN 174 (200)
T ss_pred ---------------HHHHHHHHHHHhcccC
Confidence 2347888877776543
No 34
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.3e-31 Score=233.56 Aligned_cols=165 Identities=22% Similarity=0.226 Sum_probs=153.0
Q ss_pred CCCCCCCCCcchhHhhhhhhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHH
Q 022125 30 SFSLPLSTDFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQF 109 (302)
Q Consensus 30 ~~~~p~~~~~~~~~~~~~~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~ 109 (302)
.-..|..++|+||. .||+|++||++.|+.|||+|||.+.|..|.+++.+|||+++|+++++.+|+.||+..
T Consensus 13 ~s~~~~~~~f~PY~---------~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~ 83 (235)
T KOG0179|consen 13 SSKTMDHERFSPYE---------DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLA 83 (235)
T ss_pred ccCccccccCCccc---------cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHH
Confidence 33455677999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc--ceeEecc
Q 022125 110 WHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA--SLLSCLS 187 (302)
Q Consensus 110 l~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~--~~~a~Gs 187 (302)
+.+.++.+.+.|+..+++.|++..+|++|+++||.+|++||++..||||+|++|.+ .+||||+-|.++ .+.+.|+
T Consensus 84 L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG---~VySyDPvGsyer~~~~AgGs 160 (235)
T KOG0179|consen 84 LVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKG---AVYSYDPVGSYERVTCRAGGS 160 (235)
T ss_pred HHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCce---eEEeecCCcceeeeeeecCCc
Confidence 99999999999999999999999999999999999999999999999999999988 468899988885 7999999
Q ss_pred hhhhHHHHHHhhcc-CCCCH
Q 022125 188 VGCRVLGCIMWTVK-EGGSK 206 (302)
Q Consensus 188 gs~~a~g~Le~~yk-~dmS~ 206 (302)
++.+++.+|+...+ +++.+
T Consensus 161 a~~mI~PfLDnQi~~kn~~~ 180 (235)
T KOG0179|consen 161 AASMIQPFLDNQIGHKNQNL 180 (235)
T ss_pred chhhhhhhhhhhccCcCccc
Confidence 99999999998765 34443
No 35
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-28 Score=218.95 Aligned_cols=161 Identities=9% Similarity=-0.005 Sum_probs=152.5
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+||.+|+|+||||||||||+++++-.+ +++..++..+||+.|++||+++++|+.+|.+.+++++|.++..|+-+|+.+
T Consensus 28 ~KAven~~T~IGIk~kdGVVl~vEKli~-SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~p 106 (254)
T KOG0184|consen 28 QKAVENSGTCIGIKCKDGVVLAVEKLIT-SKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDP 106 (254)
T ss_pred HHHHhcCCcEEEEecCCeEEEEEeeeec-ccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCC
Confidence 6799999999999999999999999988 788889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
+|...+|.+++++.|.++. ||||+++++++||.+||+||.++ |+|..+. ..+++|.+.+.+..-||+.--++
T Consensus 107 iP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~Lymie---pSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~ 183 (254)
T KOG0184|consen 107 IPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIE---PSGSSYGYKGAAIGKGRQAAKTELEKLKIDE 183 (254)
T ss_pred CchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEc---CCCCccceeeeeccchhHHHHHHHHhccccc
Confidence 9999999999999999863 89999999999999999999998 5777776 78999999999999999999999
Q ss_pred CCHHHHhhhh
Q 022125 204 GSKEHGSLWD 213 (302)
Q Consensus 204 mS~eEAi~l~ 213 (302)
|+.+|+++-.
T Consensus 184 mt~~e~Vkea 193 (254)
T KOG0184|consen 184 MTCKELVKEA 193 (254)
T ss_pred ccHHHHHHHH
Confidence 9999998766
No 36
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=223.30 Aligned_cols=172 Identities=26% Similarity=0.335 Sum_probs=160.4
Q ss_pred CcchhHhhhh-------hhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHH
Q 022125 38 DFDEFQKDTK-------ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110 (302)
Q Consensus 38 ~~~~~~~~~~-------~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l 110 (302)
+|..|.++.. +.++-+.|||++||++|||||+++|+|++.|+.+..++.+||+.|.++|+|+.+|-++|...+
T Consensus 13 sf~nc~rn~~l~~~g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~v 92 (271)
T KOG0173|consen 13 SFDNCQRNAALLKKGLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMV 92 (271)
T ss_pred ChhhhhhHHHHHhcCCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHH
Confidence 6777877632 255778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchh
Q 022125 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVG 189 (302)
Q Consensus 111 ~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs 189 (302)
.+.+..+.++|++..++++.|-.+-+++.+.|+.|.+. .+..+||+|+|..||+||.+- +-|++.. ||.+.|||+
T Consensus 93 t~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~-IgA~LiiGGvD~TGpHLy~i~---phGStd~~Pf~alGSGs 168 (271)
T KOG0173|consen 93 TRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGH-IGAALILGGVDPTGPHLYSIH---PHGSTDKLPFTALGSGS 168 (271)
T ss_pred HHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcCc-ccceeEEccccCCCCceEEEc---CCCCcCccceeeeccch
Confidence 99999999999999999999999999999999998776 889999999999999999984 6788876 999999999
Q ss_pred hhHHHHHHhhccCCCCHHHHhhhh
Q 022125 190 CRVLGCIMWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 190 ~~a~g~Le~~yk~dmS~eEAi~l~ 213 (302)
..++.+||..|+|||++|||++|.
T Consensus 169 laAmsvlEsr~k~dlt~eea~~Lv 192 (271)
T KOG0173|consen 169 LAAMSVLESRWKPDLTKEEAIKLV 192 (271)
T ss_pred HHHHHHHHHhcCcccCHHHHHHHH
Confidence 999999999999999999999887
No 37
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6e-28 Score=215.60 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=151.1
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++++.+.+|+|||-.+||||||+++|.+..-+-.+...+||++|+|+|.|+++|+.+|+..+++.+|..++.|.+++|++
T Consensus 25 meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~ 104 (249)
T KOG0178|consen 25 MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEE 104 (249)
T ss_pred HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999984444456789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCC-CceeEEEeeecCccccccceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYRG----MGLSVGTMIAGWDET-VREFMFQVFCFAFASLIASLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
||++.|++.++++.+.|+. ||||||++.+|||.. |.+||..|+|.++||+ ++.++|.++..++..|++.|++|
T Consensus 105 iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW--ka~ciG~N~~Aa~s~Lkqdykdd 182 (249)
T KOG0178|consen 105 IPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW--KATCIGANSGAAQSMLKQDYKDD 182 (249)
T ss_pred CcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccc--ceeeeccchHHHHHHHHhhhccc
Confidence 9999999999999998863 899999999999986 9999999877777777 88999999999999999999998
Q ss_pred CC-HHHHhhhh
Q 022125 204 GS-KEHGSLWD 213 (302)
Q Consensus 204 mS-~eEAi~l~ 213 (302)
.. ++||+.+.
T Consensus 183 ~~~~~eA~~la 193 (249)
T KOG0178|consen 183 ENDLEEAKALA 193 (249)
T ss_pred cccHHHHHHHH
Confidence 87 99998777
No 38
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-27 Score=207.41 Aligned_cols=171 Identities=19% Similarity=0.166 Sum_probs=155.0
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHH
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~ 132 (302)
.+|++++|+++||||.||+|.|........+.+.+|||+|+|++++|.+|++.|.|.+.++++...++|+++.++.|-|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 58999999999999999999999888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCceeeEeEEEEcCCC-ceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhccCCCCHHH
Q 022125 133 GASKLLANILYSYRGMGLSVGTMIAGWDETV-REFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTVKEGGSKEH 208 (302)
Q Consensus 133 ~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~yk~dmS~eE 208 (302)
.+++++|+++|++|+-||.+..+|||+|+++ |.+ ..+|..|... +|.+.|.++...+|++|..|+|||..+|
T Consensus 86 ~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfI----c~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~ 161 (204)
T KOG0180|consen 86 TFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFI----CGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDE 161 (204)
T ss_pred HHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeE----eecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHH
Confidence 9999999999999999999999999999975 443 3468988873 8999999999999999999999999998
Q ss_pred Hhhhh------hhhccccccccccc
Q 022125 209 GSLWD------QVHHMLMVYWTAGT 227 (302)
Q Consensus 209 Ai~l~------~~~~~~~~~w~~~~ 227 (302)
.++-. .+.+-.-++|...+
T Consensus 162 LFetisQa~Lna~DRDalSGwGa~v 186 (204)
T KOG0180|consen 162 LFETISQALLNAVDRDALSGWGAVV 186 (204)
T ss_pred HHHHHHHHHHhHhhhhhhccCCeEE
Confidence 87544 44555566887743
No 39
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-28 Score=215.63 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=150.4
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
+.||.+|.|.|||+-.||||||++++.. +.++...+++||++|.++|+|.+||+.+|++.+++..|+.++.|..-|+++
T Consensus 26 L~Av~~G~~SvGi~A~nGvVlatekk~~-s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~ 104 (233)
T KOG0181|consen 26 LTAVVNGQTSVGIKAANGVVLATEKKDV-SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEP 104 (233)
T ss_pred HHHHhCCCCceeeeecCceEEEeccCCC-CccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCC
Confidence 7799999999999999999999999877 789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
|++..+.+.++..+|+|+. ||||++++|||||+.+|.||++| |+|..+. ++.+.|.+...+..+||++|.++
T Consensus 105 ~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvd---PSGsyf~wkatA~Gkn~v~aktFlEkR~~ed 181 (233)
T KOG0181|consen 105 IPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVD---PSGSYFAWKATAMGKNYVNAKTFLEKRYNED 181 (233)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEEC---CccceeehhhhhhccCcchHHHHHHHHhccc
Confidence 9999999999999999963 89999999999999999999997 5666665 99999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
+.+++++
T Consensus 182 leldd~i 188 (233)
T KOG0181|consen 182 LELDDAI 188 (233)
T ss_pred cccchHH
Confidence 9999998
No 40
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.95 E-value=1.5e-26 Score=203.69 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=121.5
Q ss_pred CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHH
Q 022125 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTG 133 (302)
Q Consensus 55 GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I-~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~ 133 (302)
|+|++||+++||||||+|+|+|.|.++.+++.+||++| ++++++++||..||+|.|.+.++.++++|+. +. ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHH
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999983 22 577
Q ss_pred HHHHHHHHHHHccC-CCceeeEeEEEEcCCCceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhcc-CCCCHHH
Q 022125 134 ASKLLANILYSYRG-MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTVK-EGGSKEH 208 (302)
Q Consensus 134 lAk~Ls~~ly~~R~-rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~yk-~dmS~eE 208 (302)
+|+++..+ ..+++ +|+.+++|++ |+ |+||.+|+ .|+.+. ++.++|||+.+++|+|++.|| ||| |
T Consensus 76 ~a~l~~~l-~~~~~~~~l~~~~lv~--d~--~~ly~id~---~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---e 144 (172)
T PRK05456 76 AVELAKDW-RTDRYLRRLEAMLIVA--DK--EHSLIISG---NGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---S 144 (172)
T ss_pred HHHHHHHH-HhccCCCccEEEEEEE--cC--CcEEEECC---CCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---C
Confidence 77666443 44455 6888999994 44 69998852 455542 699999999999999999999 999 7
Q ss_pred Hhhh
Q 022125 209 GSLW 212 (302)
Q Consensus 209 Ai~l 212 (302)
|+++
T Consensus 145 A~~l 148 (172)
T PRK05456 145 AEEI 148 (172)
T ss_pred HHHH
Confidence 7633
No 41
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=1.5e-25 Score=186.71 Aligned_cols=155 Identities=27% Similarity=0.211 Sum_probs=144.6
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+||++++|||++|+|++.+.+......+.+||++++++++++++|..+|++.+.+.++.+++.|+++++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999988888788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccC-CCceeeEeEEEEcCCCceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRG-MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~-rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+.+++.++.++. +|+++++||||+|++||+||++| +.|.... .+.++|.++.++.++|++.|+++|+.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~p~~~~~iiag~~~~~~~l~~id---~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~ 157 (164)
T cd01901 81 KELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYID---PSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVEL 157 (164)
T ss_pred HHHHHHHHHhcCCCCcceEEEEEEEcCCCCEEEEEC---CCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999886 99999999999999889999986 3455553 69999999999999999999999999999854
Q ss_pred h
Q 022125 213 D 213 (302)
Q Consensus 213 ~ 213 (302)
.
T Consensus 158 ~ 158 (164)
T cd01901 158 A 158 (164)
T ss_pred H
Confidence 3
No 42
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.1e-27 Score=210.68 Aligned_cols=161 Identities=16% Similarity=0.178 Sum_probs=147.7
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
-+||.+|+|++|++++|+|+|+.+++.. ..+...++..||..+++|+++++||+.||++.++++.|.+|+.|++..+.+
T Consensus 24 qEAvrkGstaVgvrg~~~vvlgvEkkSv-~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edp 102 (249)
T KOG0183|consen 24 QEAVRKGSTAVGVRGNNCVVLGVEKKSV-PKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDP 102 (249)
T ss_pred HHHHhcCceEEEeccCceEEEEEeecch-hhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCC
Confidence 5789999999999999999999999876 889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCCC-ceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETV-REFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
++++.++++|+.+.+.|+. ||||++++|+|+|++| |.||.++ |+|.+.. .+.++|+++..+..+||++|++
T Consensus 103 vtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqte---PsG~f~ewka~aiGr~sk~VrEflEK~y~e 179 (249)
T KOG0183|consen 103 VTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTE---PSGIFSEWKANAIGRSSKTVREFLEKNYKE 179 (249)
T ss_pred cHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeC---CCcchhhhhccccccccHHHHHHHHHhccc
Confidence 9999999999999998863 8999999999999986 9999996 3444445 8899999999999999999999
Q ss_pred C--CCHHHHhhhh
Q 022125 203 G--GSKEHGSLWD 213 (302)
Q Consensus 203 d--mS~eEAi~l~ 213 (302)
+ .+..++++|.
T Consensus 180 ~~~~~~~~~ikL~ 192 (249)
T KOG0183|consen 180 EAIATEGETIKLA 192 (249)
T ss_pred ccccccccHHHHH
Confidence 8 5667777666
No 43
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.94 E-value=4.6e-26 Score=200.47 Aligned_cols=139 Identities=19% Similarity=0.139 Sum_probs=117.9
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINP-YMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~-~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
+|+|||+++||||||+|+|+++|.++.+++.+||++|++ +++|++||..||+|.+.++++.++++|+++.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 699999999999999999999999999999999999999 999999999999999999999999999998773 55
Q ss_pred HHHHHHHHHHccCCCce-eeEeEEEEcCCCceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhccCC-CCHH
Q 022125 135 SKLLANILYSYRGMGLS-VGTMIAGWDETVREFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTVKEG-GSKE 207 (302)
Q Consensus 135 Ak~Ls~~ly~~R~rP~~-vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~yk~d-mS~e 207 (302)
+++ ++.+..++++|+. +.++++++| +||.++ +.|+.+. ++.++||||.+++|+||..||++ ||.+
T Consensus 76 a~l-~~~l~~~~~~~~l~a~~iv~~~~----~ly~id---~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms~~ 145 (171)
T cd01913 76 VEL-AKDWRTDRYLRRLEAMLIVADKE----HTLLIS---GNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLSAE 145 (171)
T ss_pred HHH-HHHHHhccCcCceEEEEEEeCCC----cEEEEC---CCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCCHH
Confidence 555 4444555666766 666665443 898885 3444554 39999999999999999999995 9954
No 44
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-25 Score=201.28 Aligned_cols=184 Identities=16% Similarity=0.082 Sum_probs=166.1
Q ss_pred hccccc-CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 49 TLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 49 ~~av~~-GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
.+|+++ |-|+||++++|++|+++.++.. .+++.++++..+|+|+.+++|+++|..+|++..++++|.++..+++.||+
T Consensus 29 fkAin~~gltsVavrgkDcavvvsqKkvp-DKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gy 107 (246)
T KOG0182|consen 29 FKAINQAGLTSVAVRGKDCAVVVTQKKVP-DKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGY 107 (246)
T ss_pred HHHhhcCCCceEEEcCCceEEEEecccCc-ccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCC
Confidence 678888 8999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCC-CceeEEEeeecCccccc-c-ceeEecchhhhHHHHHHhhc
Q 022125 128 RISVTGASKLLANILYSYRG----MGLSVGTMIAGWDET-VREFMFQVFCFAFASLI-A-SLLSCLSVGCRVLGCIMWTV 200 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~-~-~~~a~Gsgs~~a~g~Le~~y 200 (302)
+||++.||++++++.|.|+. ||+||.+++.|+|++ ||.+|.+| +.|.+ . .+.+.|....-+..+||+.|
T Consensus 108 emp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~D----pAGyy~g~kAtaaG~Kq~e~tsfLEKk~ 183 (246)
T KOG0182|consen 108 EMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTD----PAGYYYGFKATAAGVKQQEATSFLEKKY 183 (246)
T ss_pred CCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeec----CccccccceeeecccchhhHHHHHHHhh
Confidence 99999999999999988853 899999999999986 99999985 56665 4 78999999999999999999
Q ss_pred cCC--CCHHHHhhhhhhhccccccccccchhhHHHHHHHHHHHHhhhhcccCccchhh
Q 022125 201 KEG--GSKEHGSLWDQVHHMLMVYWTAGTSLTCLLKKLRSWLEELFIMRHSEMQPVVV 256 (302)
Q Consensus 201 k~d--mS~eEAi~l~~~~~~~~~~w~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~ 256 (302)
|++ .|.+|++ .+.+.|| .+.|..||+.+|-|.--|-+
T Consensus 184 Kk~~~~t~~e~v---------------e~ai~al----~~sl~~Dfk~se~EVgvv~~ 222 (246)
T KOG0182|consen 184 KKDIDLTFEETV---------------ETAISAL----QSSLGIDFKSSELEVGVVTV 222 (246)
T ss_pred ccCccchHHHHH---------------HHHHHHH----HHHHhcccCCcceEEEEEEc
Confidence 998 5688887 3566777 88999999999988654433
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.93 E-value=2.9e-25 Score=195.43 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=116.0
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I-~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
||+|||+++||||||+|+|.|+|.++.+++.+||++| +++++|++||..||+|.+.+.++.++++|+++. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6999999999999999999999999999999999999 599999999999999999999999999998743 4777
Q ss_pred HHHHHHHHHHccCCCce-eeEeEEEEcCCCceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhc-cCCCC
Q 022125 135 SKLLANILYSYRGMGLS-VGTMIAGWDETVREFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTV-KEGGS 205 (302)
Q Consensus 135 Ak~Ls~~ly~~R~rP~~-vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~y-k~dmS 205 (302)
++++++ +..++++|+. +.+|++|+ ++||.++ +.|+.+. ++.++||||.+++|+||..| +++|+
T Consensus 76 a~l~~~-~~~~~~~~~l~a~~iv~~~----~~ly~i~---~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s 143 (171)
T TIGR03692 76 VELAKD-WRTDRYLRRLEAMLIVADK----ETSLLIS---GTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS 143 (171)
T ss_pred HHHHHH-HhhcccccccEEEEEEEcC----CCEEEEc---CCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC
Confidence 887777 4345555444 66666644 3898875 3444455 59999999999999999999 58888
No 46
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-24 Score=195.80 Aligned_cols=158 Identities=21% Similarity=0.239 Sum_probs=141.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhh-HhhCC
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE-LANKR 127 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~-l~~g~ 127 (302)
+.++.+||++||+||+||||||+|++.|+|++...++++||++|++++++|++|..+|+|.+.+.|.....+.. +..|+
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~ 114 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQ 114 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhccccccccc
Confidence 55778999999999999999999999999999999999999999999999999999999999999988776644 66779
Q ss_pred cCCHHHHHHHHHHHHHHccC--CCceeeEeEEEEcCCC-ceeEEEeeecCc-ccccc-ceeEecchhhhHHHHHHhhcc-
Q 022125 128 RISVTGASKLLANILYSYRG--MGLSVGTMIAGWDETV-REFMFQVFCFAF-ASLIA-SLLSCLSVGCRVLGCIMWTVK- 201 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R~--rP~~vs~IIaG~D~~G-p~LY~idyS~D~-Gg~~~-~~~a~Gsgs~~a~g~Le~~yk- 201 (302)
.+.|+.++++|.++||++|. .|++..++|||+|++| |-|-++ |. |-++. +..|.|.|.+.++.+|++.|.
T Consensus 115 ~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V----~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~ 190 (256)
T KOG0185|consen 115 SLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYV----DLLGVAYESPVVATGFGAHLALPLLRDEWEK 190 (256)
T ss_pred ccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEE----eeccccccCchhhhhhHHHhhhHHHHHhhhc
Confidence 99999999999999999975 7999999999999965 666665 55 44455 899999999999999999998
Q ss_pred --CCCCHHHHh
Q 022125 202 --EGGSKEHGS 210 (302)
Q Consensus 202 --~dmS~eEAi 210 (302)
+++|.+||.
T Consensus 191 k~~~~s~eeA~ 201 (256)
T KOG0185|consen 191 KGEDLSREEAE 201 (256)
T ss_pred cchhhHHHHHH
Confidence 677888887
No 47
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.1e-23 Score=187.47 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=143.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|++.|+++||+|.++-.||++-+|.. +. .+...+|||+|++|+++++||+.+|++.+.++++.+|..+++.++++
T Consensus 26 ~EavkqGsatVGLks~thaVLvAl~r~~-se--Lss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~ 102 (264)
T KOG0863|consen 26 MEAVKQGSATVGLKSRTHAVLVALKRAQ-SE--LSSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRP 102 (264)
T ss_pred HHHHhcccceEeecccceEEEeeeccch-hH--HHHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCc
Confidence 8999999999999999999999988876 33 34567999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc--
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK-- 201 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk-- 201 (302)
+++.-+...|.+-++..+ .|||||+++++|||+.||+||... |+|..+. ...++|+.|+.+..+||++..
T Consensus 103 ~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~---Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f 179 (264)
T KOG0863|consen 103 LPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFC---PSGNVFECKGMSIGSRSQSARTYLERNLEEF 179 (264)
T ss_pred ccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEc---CCccEEEEeeeecccchhhHHHHHHHHHHHH
Confidence 999999999999998764 389999999999999999999875 6777776 789999999999999999877
Q ss_pred CCCCHHHHhhhh
Q 022125 202 EGGSKEHGSLWD 213 (302)
Q Consensus 202 ~dmS~eEAi~l~ 213 (302)
++++.+|.++.+
T Consensus 180 ~~~~~eELI~~g 191 (264)
T KOG0863|consen 180 EDSSPEELIKHG 191 (264)
T ss_pred hcCCHHHHHHHH
Confidence 599999998554
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=4.4e-10 Score=97.78 Aligned_cols=145 Identities=18% Similarity=0.139 Sum_probs=113.0
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecC-cEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCH
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINP-YMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV 131 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~-~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv 131 (302)
.++||+++++-++-|+||+|.+.|.|+.+.+.+.+|+.+|.. .++.|++|..||+.++.+.+..+++.|.-. +
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~------L 75 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGD------L 75 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCc------H
Confidence 468999999999999999999999999999999999988865 899999999999999999999999988621 1
Q ss_pred HHHHHHHHHHHHHccC-CCceeeEeEEEEcCCCceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhccC-CCCH
Q 022125 132 TGASKLLANILYSYRG-MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTVKE-GGSK 206 (302)
Q Consensus 132 ~~lAk~Ls~~ly~~R~-rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~yk~-dmS~ 206 (302)
.-.|..++.-++.-|. |-+..-++++ |++ .+|.+ + -.|-.++ ++.++|||+.++++.-+..++. ++|.
T Consensus 76 ~raavelaKdwr~Dk~lr~LEAmllVa--d~~--~il~i-s--G~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA 148 (178)
T COG5405 76 FRAAVELAKDWRTDKYLRKLEAMLLVA--DKT--HILII-T--GNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSA 148 (178)
T ss_pred HHHHHHHHHhhhhhhHHHHHhhheeEe--CCC--cEEEE-e--cCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCH
Confidence 1244455555554332 4466666666 553 45544 2 3455554 5999999999999998888875 8888
Q ss_pred HHHh
Q 022125 207 EHGS 210 (302)
Q Consensus 207 eEAi 210 (302)
+|-.
T Consensus 149 ~eIa 152 (178)
T COG5405 149 REIA 152 (178)
T ss_pred HHHH
Confidence 7764
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.6e-06 Score=77.03 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=119.0
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEe----cCcEEEEEecChhhHHHHHHHHHHHHHHhhHh-hCCcCC
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI----NPYMLGTMAGGAADCQFWHRNLGIKCRLHELA-NKRRIS 130 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I----~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~-~g~~is 130 (302)
|-|+|++-..|.|+++|+|...|.- .-...+|+|.. +.-+++..+|..|=.|.+...+.+..+.-..+ .-.-++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~s 80 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPS 80 (255)
T ss_pred ceEEEEEeccceEEecccccccCch-HHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchh
Confidence 5689999999999999999886631 12356777655 33567789999999999999998877622211 123456
Q ss_pred HHHHHHHHHHHHHH---c-c------CCCceeeEeEEEEcCCC-ceeEEEeeecCcccccc-----ceeEecchhhhHHH
Q 022125 131 VTGASKLLANILYS---Y-R------GMGLSVGTMIAGWDETV-REFMFQVFCFAFASLIA-----SLLSCLSVGCRVLG 194 (302)
Q Consensus 131 v~~lAk~Ls~~ly~---~-R------~rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~~-----~~~a~Gsgs~~a~g 194 (302)
+-.++.++.....+ + + .--|.|++|++|-=..+ |.||.| | |.|.++. +|.-+|. +.+-..
T Consensus 81 m~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~I-Y--pqGNFIqaT~etpf~QiGE-tKYGKP 156 (255)
T COG3484 81 MYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLI-Y--PQGNFIQATPETPFLQIGE-TKYGKP 156 (255)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEE-c--cCCCeeecCCCCceeEccc-cccCch
Confidence 67777777765543 2 1 23599999999965543 779987 4 8899873 7899988 455678
Q ss_pred HHHhhccCCCCHHHHhhhh--hhhcccccccc
Q 022125 195 CIMWTVKEGGSKEHGSLWD--QVHHMLMVYWT 224 (302)
Q Consensus 195 ~Le~~yk~dmS~eEAi~l~--~~~~~~~~~w~ 224 (302)
+|++.+.-++.++|+.++. ....+-|+|..
T Consensus 157 ildR~i~~~~pLeea~kcaLvS~DSTlkSNiS 188 (255)
T COG3484 157 ILDRTITYDTPLEEAAKCALVSFDSTLKSNIS 188 (255)
T ss_pred hhhhhhhccCCHHHHhhheEEecchhhhcccc
Confidence 9999999999999999877 33444444443
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=89.02 E-value=7.8 Score=35.26 Aligned_cols=121 Identities=14% Similarity=-0.013 Sum_probs=67.7
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+-+||..+++|.|+|.|+|. +++-|.-.....|-+. +..|+=-+=++|.
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee---------LYsG~IktdeEL~ 50 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE---------LYSGKIKTDEELL 50 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH---------HhCCccCCHHHHH
Confidence 46899999999999999984 3566766665544442 2334333455666
Q ss_pred HHHHHHH---H--HccC--CCceeeEe------EEEEcCCCceeEEEeeecCccccc-c-------ceeEecchh-----
Q 022125 136 KLLANIL---Y--SYRG--MGLSVGTM------IAGWDETVREFMFQVFCFAFASLI-A-------SLLSCLSVG----- 189 (302)
Q Consensus 136 k~Ls~~l---y--~~R~--rP~~vs~I------IaG~D~~Gp~LY~idyS~D~Gg~~-~-------~~~a~Gsgs----- 189 (302)
+....+= + ..|. +-.+- ++ +.|.|..-..+|.+ .|++. . .-...|.++
T Consensus 51 kkA~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t-----~g~~~Ivei~~~~i~~~~~g~~sgiIVf 124 (194)
T PF09894_consen 51 KKAEELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYAT-----KGKYAIVEIENDEITNKSRGEGSGIIVF 124 (194)
T ss_pred HHHHHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEec-----CCCEEEEEecCCeEEEEecCCceeEEEE
Confidence 6555421 1 1111 11111 11 22444444566653 23331 1 122233332
Q ss_pred ------hhHHHHHHhhccCCCCHHHHhhhh
Q 022125 190 ------CRVLGCIMWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 190 ------~~a~g~Le~~yk~dmS~eEAi~l~ 213 (302)
..+...|.+.|+|.|+++++..+.
T Consensus 125 GNk~~K~ia~~~lkk~~~~k~~l~~i~~i~ 154 (194)
T PF09894_consen 125 GNKFTKEIANKELKKYWKPKMSLKDIENIF 154 (194)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456667999999999999887544
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=50.72 E-value=13 Score=32.10 Aligned_cols=40 Identities=5% Similarity=-0.072 Sum_probs=34.2
Q ss_pred Ccccccc--ceeEecchhhhHHHHHHhhccCCCCHHHHhhhh
Q 022125 174 AFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 174 D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l~ 213 (302)
|-.|.+. .|-++|.||..+.+.+-..|-.++|++|+.+.-
T Consensus 74 d~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIk 115 (157)
T KOG3361|consen 74 DDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIK 115 (157)
T ss_pred CCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcc
Confidence 4455553 799999999999999999999999999998654
No 52
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=39.96 E-value=44 Score=26.28 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.7
Q ss_pred hhheeeeeecccchhhhHHHhhcCC
Q 022125 277 ESFTTIIIQSHPVQWSKKWLKSQGH 301 (302)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (302)
|..-.|+|+.|-++.-|+||.+.|.
T Consensus 63 ~~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 63 ELTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred ecCCEEEEcCccHHHHHHHHHHCcC
Confidence 6677899999999999999999984
No 53
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.20 E-value=1.4e+02 Score=28.58 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=39.9
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+-+|+..++||.|+|.|+|. +++-|.-.|...+-+. +..|+--+-++|+
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek---------LYsGeIkteEEL~ 50 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK---------LYSGEIKTEEELA 50 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH---------hhcCccccHHHHH
Confidence 56899999999999999984 3566777776655443 3456555677788
Q ss_pred HHHHHH
Q 022125 136 KLLANI 141 (302)
Q Consensus 136 k~Ls~~ 141 (302)
+++..+
T Consensus 51 r~aeel 56 (293)
T COG4079 51 RKAEEL 56 (293)
T ss_pred HHHHHc
Confidence 777654
No 54
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=23.86 E-value=2.3e+02 Score=24.04 Aligned_cols=101 Identities=12% Similarity=-0.031 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHcc-CCCceeeEeEEEEcCCCceeEEEeeecCcccccccee
Q 022125 105 ADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYR-GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIASLL 183 (302)
Q Consensus 105 aD~q~l~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R-~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~~~~ 183 (302)
.|...+.+.|+.+ -+|+++-++.+.+.|+..+.... ..|+-.++ .|
T Consensus 14 ~~~~~L~~~L~~~------l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSf---------------------------HG 60 (127)
T PF06309_consen 14 YNITGLEKDLQRN------LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSF---------------------------HG 60 (127)
T ss_pred CCHHHHHHHHHHH------ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEe---------------------------ec
Confidence 3555555555443 47888888888888888775432 12322211 13
Q ss_pred EecchhhhHHHHHHhh-ccCCCCHHHHhhhh-hhhccccccccccchhhHHHHHHHHHHHHhh
Q 022125 184 SCLSVGCRVLGCIMWT-VKEGGSKEHGSLWD-QVHHMLMVYWTAGTSLTCLLKKLRSWLEELF 244 (302)
Q Consensus 184 a~Gsgs~~a~g~Le~~-yk~dmS~eEAi~l~-~~~~~~~~~w~~~~~~~~l~~~~r~~l~~~~ 244 (302)
..|.|..++..++-+. |+.+|....-.... +++.+.... ...+ ++.|++|+.+.-
T Consensus 61 ~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~--v~~Y----k~~L~~~I~~~v 117 (127)
T PF06309_consen 61 WTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSN--VDEY----KEQLKSWIRGNV 117 (127)
T ss_pred CCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchH--HHHH----HHHHHHHHHHHH
Confidence 3377777777776666 99998877665444 444444321 1233 344466665543
Done!