Query 022125
Match_columns 302
No_of_seqs 223 out of 1779
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_K Proteasome component PR 100.0 2.3E-39 7.7E-44 303.7 20.7 186 24-212 36-231 (287)
2 1yar_H Proteasome beta subunit 100.0 7.1E-38 2.4E-42 280.8 21.3 157 50-210 3-160 (217)
3 1iru_M 20S proteasome; cell cy 100.0 2E-37 6.7E-42 276.1 22.5 161 38-210 1-172 (213)
4 1ryp_M 20S proteasome; multica 100.0 4.5E-37 1.6E-41 276.5 20.9 155 53-210 7-181 (222)
5 3nzj_H Proteasome component PU 100.0 6.7E-37 2.3E-41 283.3 21.7 169 38-210 5-181 (261)
6 1iru_N 20S proteasome; cell cy 100.0 2.7E-37 9.3E-42 276.6 18.4 159 49-210 2-166 (219)
7 1j2q_H Proteasome beta subunit 100.0 7.4E-37 2.5E-41 270.3 20.0 154 56-212 1-156 (202)
8 1ryp_H 20S proteasome; multica 100.0 1.4E-36 4.8E-41 269.4 21.2 157 49-210 3-161 (205)
9 3h4p_a Proteasome subunit beta 100.0 6.4E-37 2.2E-41 275.2 18.1 156 55-213 1-159 (219)
10 1iru_L 20S proteasome; cell cy 100.0 2.3E-36 7.7E-41 267.6 21.0 152 56-210 1-153 (204)
11 1yar_A Proteasome alpha subuni 100.0 1.7E-36 5.9E-41 274.0 20.4 160 49-212 28-192 (233)
12 1iru_J 20S proteasome; cell cy 100.0 1.2E-36 4.2E-41 269.5 19.0 157 53-212 6-166 (205)
13 1ryp_A 20S proteasome; multica 100.0 1.1E-36 3.7E-41 277.2 18.2 159 49-211 23-195 (243)
14 1ryp_N 20S proteasome; multica 100.0 1.6E-36 5.5E-41 274.4 19.2 159 49-210 2-174 (233)
15 1ryp_J 20S proteasome; multica 100.0 4E-36 1.4E-40 266.0 20.7 155 53-211 6-164 (204)
16 1iru_B 20S proteasome; cell cy 100.0 2.6E-36 9E-41 272.8 19.3 161 49-213 25-190 (233)
17 1ryp_C 20S proteasome; multica 100.0 3.8E-36 1.3E-40 273.5 20.1 162 49-213 25-192 (244)
18 1ryp_L 20S proteasome; multica 100.0 1.1E-35 3.8E-40 264.9 20.8 154 56-212 1-156 (212)
19 1ryp_D 20S proteasome; multica 100.0 7.8E-36 2.7E-40 271.2 20.1 161 49-212 22-192 (241)
20 1iru_H 20S proteasome; cell cy 100.0 1.7E-35 5.9E-40 262.1 21.5 151 56-210 1-153 (205)
21 3h4p_A Proteasome subunit alph 100.0 2.5E-36 8.6E-41 279.5 15.8 161 49-213 32-197 (264)
22 1iru_G 20S proteasome; cell cy 100.0 5.9E-36 2E-40 274.7 17.9 161 49-213 27-193 (254)
23 1ryp_E 20S proteasome; multica 100.0 5.6E-36 1.9E-40 272.1 17.6 161 49-213 20-192 (242)
24 1iru_E 20S proteasome; cell cy 100.0 7E-36 2.4E-40 271.5 18.1 161 49-213 28-198 (241)
25 1g0u_M Proteasome component PR 100.0 9.5E-36 3.2E-40 275.4 18.8 160 48-210 34-207 (266)
26 1ryp_G 20S proteasome; multica 100.0 2.1E-35 7.1E-40 269.6 20.3 160 49-212 24-191 (244)
27 1iru_C 20S proteasome; cell cy 100.0 1.6E-35 5.6E-40 272.7 19.7 162 49-213 25-193 (261)
28 1ryp_K 20S proteasome; multica 100.0 3.7E-35 1.3E-39 258.4 20.2 152 56-210 2-158 (198)
29 1iru_D 20S proteasome; cell cy 100.0 1.6E-35 5.4E-40 270.7 18.2 161 49-213 23-191 (248)
30 1iru_A 20S proteasome; cell cy 100.0 2.1E-35 7.2E-40 269.1 18.6 160 49-212 29-197 (246)
31 3nzj_F Proteasome component C1 100.0 2.1E-35 7.2E-40 276.9 19.0 161 49-213 28-196 (288)
32 3unf_H Proteasome subunit beta 100.0 7.9E-35 2.7E-39 265.1 21.7 151 56-210 1-152 (234)
33 1ryp_F 20S proteasome; multica 100.0 2.8E-35 9.4E-40 266.4 18.6 159 49-213 25-192 (233)
34 1ryp_I 20S proteasome; multica 100.0 6.8E-35 2.3E-39 262.5 20.9 151 56-210 1-152 (222)
35 3unf_N Proteasome subunit beta 100.0 9.1E-35 3.1E-39 256.1 20.8 149 56-210 1-152 (199)
36 1j2p_A Alpha-ring, proteasome 100.0 5.5E-35 1.9E-39 266.6 19.9 160 49-213 28-192 (246)
37 1q5r_H Proteasome beta-type su 100.0 7.5E-35 2.6E-39 273.9 20.7 160 48-210 58-229 (294)
38 2jay_A Proteasome; hydrolase; 100.0 4.5E-35 1.5E-39 275.0 18.4 157 52-211 54-222 (291)
39 1iru_K 20S proteasome; cell cy 100.0 1.5E-34 5.3E-39 255.3 19.5 152 56-210 2-157 (201)
40 3mi0_A Proteasome subunit alph 100.0 1.6E-34 5.3E-39 265.6 19.8 168 34-212 4-183 (248)
41 1ryp_B 20S proteasome; multica 100.0 1.7E-34 5.9E-39 263.9 19.6 160 49-212 25-191 (250)
42 1iru_I 20S proteasome; cell cy 100.0 4.4E-34 1.5E-38 259.5 21.8 151 56-210 1-152 (234)
43 1iru_F 20S proteasome; cell cy 100.0 1.1E-34 3.9E-39 267.7 17.9 159 49-213 26-191 (263)
44 1q5q_H Proteasome beta-type su 100.0 4.9E-34 1.7E-38 258.9 21.3 152 56-210 1-164 (235)
45 1q5q_A Proteasome alpha-type s 100.0 4.6E-34 1.6E-38 263.3 19.8 170 33-213 3-184 (259)
46 2z3b_A ATP-dependent protease 100.0 2.3E-29 7.9E-34 219.9 16.3 145 53-210 3-156 (180)
47 1m4y_A ATP-dependent protease 100.0 8E-29 2.7E-33 214.0 18.5 141 56-209 1-147 (171)
48 1g3k_A ATP-dependent protease 100.0 8.4E-29 2.9E-33 214.7 17.2 142 56-209 1-148 (174)
No 1
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=2.3e-39 Score=303.74 Aligned_cols=186 Identities=44% Similarity=0.700 Sum_probs=147.2
Q ss_pred cccC-CCCCCCCCCCCcchhHhhhhh-------hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCc
Q 022125 24 ELSA-APSFSLPLSTDFDEFQKDTKA-------TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPY 95 (302)
Q Consensus 24 ~~~~-~~~~~~p~~~~~~~~~~~~~~-------~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~ 95 (302)
.+.. ++.|++|+..+|..|++...+ ..+|.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++
T Consensus 36 ~~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~ 115 (287)
T 3nzj_K 36 QFQRLAPSLTVPPIASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPF 115 (287)
T ss_dssp ----------------------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETT
T ss_pred CCCCCCcccccCCCCCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCc
Confidence 3344 679999999999999987543 67999999999999999999999999999999999999999999999
Q ss_pred EEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEc-CCCceeEEEeeecC
Q 022125 96 MLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETVREFMFQVFCFA 174 (302)
Q Consensus 96 i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D-~~Gp~LY~idyS~D 174 (302)
+++++||..||++.+.++++.+++.|+++++++++++.+|+++++++|.+|.+||++++|||||| ++||+||++| +
T Consensus 116 i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iD---p 192 (287)
T 3nzj_K 116 LLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD---S 192 (287)
T ss_dssp EEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEE---T
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEEC---C
Confidence 99999999999999999999999999999999999999999999999999999999999999999 5789999997 4
Q ss_pred cccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 175 FASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 175 ~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
.|..+. ++.++|+|+.+++++||+.|+++||++||+++
T Consensus 193 ~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~l 231 (287)
T 3nzj_K 193 DGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 231 (287)
T ss_dssp TCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHH
T ss_pred CceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHH
Confidence 566665 99999999999999999999999999999843
No 2
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=7.1e-38 Score=280.82 Aligned_cols=157 Identities=24% Similarity=0.294 Sum_probs=145.7
Q ss_pred cccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcC
Q 022125 50 LKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRI 129 (302)
Q Consensus 50 ~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~i 129 (302)
+++.+|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..+|++.+.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHH
Q 022125 130 SVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEH 208 (302)
Q Consensus 130 sv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eE 208 (302)
+++.+|+++++++|.+|.|||++++|||||| +||+||++| +.|..+. ++.++|+|+.+++++||+.|+++||.+|
T Consensus 83 ~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ee 158 (217)
T 1yar_H 83 PIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSID---AAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDE 158 (217)
T ss_dssp CHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-SSEEEEEEC---TTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-CCCEEEEEC---CCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHH
Confidence 9999999999999999999999999999999 999999986 4566655 8999999999999999999999999999
Q ss_pred Hh
Q 022125 209 GS 210 (302)
Q Consensus 209 Ai 210 (302)
|+
T Consensus 159 a~ 160 (217)
T 1yar_H 159 GV 160 (217)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 3
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=2e-37 Score=276.10 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=151.4
Q ss_pred CcchhHhhhhhhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHH
Q 022125 38 DFDEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIK 117 (302)
Q Consensus 38 ~~~~~~~~~~~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e 117 (302)
+|+||. ++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.++++.+
T Consensus 1 ~~~p~v---------~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~ 71 (213)
T 1iru_M 1 RFSPYV---------FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEAR 71 (213)
T ss_dssp CCCSCC---------CCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcc---------CCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHH
Confidence 367777 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCC-ceeEEEeeecCcccccc-ceeEecchhhhHHHH
Q 022125 118 CRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETV-REFMFQVFCFAFASLIA-SLLSCLSVGCRVLGC 195 (302)
Q Consensus 118 ~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~ 195 (302)
++.|+++++++++++.+|+++++++|.+|.+||++++||||||++| |+||.+| +.|.... ++.++|+|+.+++++
T Consensus 72 ~~~~~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id---~~G~~~~~~~~aiGsg~~~a~~~ 148 (213)
T 1iru_M 72 LKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD---PVGSYQRDSFKAGGSASAMLQPL 148 (213)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEEC---TTSCEEEESEEEEETTHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEEC---CCCCEEECCEEEEeeCHHHHHHH
Confidence 9999999999999999999999999998899999999999999765 9999986 3555444 899999999999999
Q ss_pred HHhh---------ccCCCCHHHHh
Q 022125 196 IMWT---------VKEGGSKEHGS 210 (302)
Q Consensus 196 Le~~---------yk~dmS~eEAi 210 (302)
||+. |+++||++||+
T Consensus 149 Le~~~~~~~~~~~~~~~~s~eea~ 172 (213)
T 1iru_M 149 LDNQVGFKNMQNVEHVPLSLDRAM 172 (213)
T ss_dssp HHHHTTCCSCSSCCCCCCCHHHHH
T ss_pred HhhccccccccccCCCCCCHHHHH
Confidence 9999 88999999998
No 4
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=4.5e-37 Score=276.46 Aligned_cols=155 Identities=18% Similarity=0.137 Sum_probs=147.3
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhC-CcCCH
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANK-RRISV 131 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g-~~isv 131 (302)
++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.+.++.+++.|+++++ +++++
T Consensus 7 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v 86 (222)
T 1ryp_M 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSI 86 (222)
T ss_dssp CCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCH
T ss_pred cCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHccCCCceeeEeEEEEcCCC-ceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhh----------
Q 022125 132 TGASKLLANILYSYRGMGLSVGTMIAGWDETV-REFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWT---------- 199 (302)
Q Consensus 132 ~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~G-p~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~---------- 199 (302)
+.+|+++++++|.+|++||++++||||||++| |+||.+| +.|.... ++.++|+++.+++++||+.
T Consensus 87 ~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~d---p~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~ 163 (222)
T 1ryp_M 87 NSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFD---PVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPG 163 (222)
T ss_dssp HHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEEC---TTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTT
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEEC---CCcCEEecCEEEEcCcHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999765 9999986 3555544 8999999999999999998
Q ss_pred -------ccCCCCHHHHh
Q 022125 200 -------VKEGGSKEHGS 210 (302)
Q Consensus 200 -------yk~dmS~eEAi 210 (302)
|+++||++||+
T Consensus 164 ~~~~~~~~~~~~s~eeA~ 181 (222)
T 1ryp_M 164 TNGKVKKPLKYLSVEEVI 181 (222)
T ss_dssp STTCSBCCCCCCCHHHHH
T ss_pred cccccccCCCCCCHHHHH
Confidence 89999999998
No 5
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6.7e-37 Score=283.30 Aligned_cols=169 Identities=26% Similarity=0.330 Sum_probs=144.4
Q ss_pred CcchhHhhhh-------hhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHH
Q 022125 38 DFDEFQKDTK-------ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110 (302)
Q Consensus 38 ~~~~~~~~~~-------~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l 110 (302)
+|+++.|+.. .++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+
T Consensus 5 ~~~~~~rn~~~~~~~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l 84 (261)
T 3nzj_H 5 SFDNYQRNNFLAENSHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 84 (261)
T ss_dssp -------------------------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHH
T ss_pred CchhhhhHHHHHhcCCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHH
Confidence 5666666542 378999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhCCcCCHHHHHHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchh
Q 022125 111 HRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVG 189 (302)
Q Consensus 111 ~~~lr~e~~~y~l~~g~~isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs 189 (302)
.+.++.+++.|+++++++++++.+++++++.+|.++ +||++++||||||++||+||++| +.|.... ++.++|+|+
T Consensus 85 ~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~~-~~~gv~llvaG~D~~Gp~Ly~iD---p~G~~~~~~~~aiGsgs 160 (261)
T 3nzj_H 85 TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPTGSHLFSIH---AHGSTDVGYYLSLGSGS 160 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTT-TCSCEEEEEEEEETTEEEEEEEC---TTSCEEECSEEEESTTH
T ss_pred HHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHhc-CcccEEEEEEEEeCCCCEEEEEC---CCccEEecCeEEeccch
Confidence 999999999999999999999999999999999875 58999999999999999999986 4566555 999999999
Q ss_pred hhHHHHHHhhccCCCCHHHHh
Q 022125 190 CRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 190 ~~a~g~Le~~yk~dmS~eEAi 210 (302)
.+++++||+.|+++||++||+
T Consensus 161 ~~a~~~Le~~~~~~ms~eEA~ 181 (261)
T 3nzj_H 161 LAAMAVLESHWKQDLTKEEAI 181 (261)
T ss_dssp HHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHH
Confidence 999999999999999999998
No 6
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.7e-37 Score=276.56 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=151.0
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhH-hhCC
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL-ANKR 127 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l-~~g~ 127 (302)
.+||.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++ ++++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCHHHHHHHHHHHHHHcc--CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC--
Q 022125 128 RISVTGASKLLANILYSYR--GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE-- 202 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R--~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~-- 202 (302)
+++++.+|+++++++|.+| .+||++++||||||++||+||++| +.|.... ++.++|+|+.+++++||+.|++
T Consensus 82 ~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~gp~Ly~id---~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 82 SYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVD---MLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEEC---SSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEECCCCEEEEEC---CCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 9999999999999999887 789999999999999899999986 3555554 8999999999999999999999
Q ss_pred CCCHHHHh
Q 022125 203 GGSKEHGS 210 (302)
Q Consensus 203 dmS~eEAi 210 (302)
+||.+||+
T Consensus 159 ~mt~eea~ 166 (219)
T 1iru_N 159 VLSQTEAR 166 (219)
T ss_dssp CCCHHHHH
T ss_pred CCCHHHHH
Confidence 99999998
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=7.4e-37 Score=270.32 Aligned_cols=154 Identities=28% Similarity=0.371 Sum_probs=146.9
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++|+++.+|
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-c-eeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-S-LLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~-~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.+|.|||++++||||||++||+||++| +.|..+. + +.++|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~~gp~Ly~id---~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l 156 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSID---PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVEL 156 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEEC---TTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCEEEEEC---CCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999986 4566665 7 9999999999999999999999999999833
No 8
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=1.4e-36 Score=269.41 Aligned_cols=157 Identities=23% Similarity=0.278 Sum_probs=149.3
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
.+|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCH
Q 022125 129 ISVTGASKLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSK 206 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~ 206 (302)
++++.+|+++++++|.+|.+ |++++||||||+ +||+||.+| +.|.... ++.++|+|+.+++++||+.|+++||.
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id---~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ 157 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIP---LGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSK 157 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEEC---TTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCH
T ss_pred CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEEC---CCccEEecCEEEEEecHHHHHHHHHhccCCCCCH
Confidence 99999999999999999887 999999999997 689999986 3555554 89999999999999999999999999
Q ss_pred HHHh
Q 022125 207 EHGS 210 (302)
Q Consensus 207 eEAi 210 (302)
+||+
T Consensus 158 eea~ 161 (205)
T 1ryp_H 158 EETV 161 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
No 9
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.4e-37 Score=275.21 Aligned_cols=156 Identities=26% Similarity=0.307 Sum_probs=147.8
Q ss_pred CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 55 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 55 GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-c-eeEecchhhhHHHHHHhhccCCCCHHHHhh
Q 022125 135 SKLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-S-LLSCLSVGCRVLGCIMWTVKEGGSKEHGSL 211 (302)
Q Consensus 135 Ak~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~-~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~ 211 (302)
|+++++++|.+|.+||++++||||||+ +||+||++| +.|+.+. + +.++|+++.+++++||+.|+++||++||+.
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~ 157 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLD---PLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIK 157 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEEC---SSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEEC---CCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999999999999999999999998 799999986 4666664 6 999999999999999999999999999984
Q ss_pred hh
Q 022125 212 WD 213 (302)
Q Consensus 212 l~ 213 (302)
+.
T Consensus 158 la 159 (219)
T 3h4p_a 158 LA 159 (219)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 10
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.3e-36 Score=267.61 Aligned_cols=152 Identities=53% Similarity=0.818 Sum_probs=146.4
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||++.+.+.++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++++|.+|.+||++++||||||++||+||++| +.|..+. ++.++|+|+.+++++||+.|+++||.+||+
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~ 153 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVD---SEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAY 153 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEE---SSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeCCCCEEEEEC---CCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHH
Confidence 99999999999999999999999999999999997 4666665 899999999999999999999999999998
No 11
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.7e-36 Score=274.00 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=150.2
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (233)
T 1yar_A 28 REAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSL 106 (233)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 689999999999999999999999999975 7888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHccC----CCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYRG----MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R~----rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|+++++++|.++. |||++++||||||++||+||.+| +.|.... ++.++|+|+.+++++||+.|+++
T Consensus 107 ~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id---~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 183 (233)
T 1yar_A 107 VNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCD---PAGTINEYKATAIGSGKDAVVSFLEREYKEN 183 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEEC---TTCCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEEC---CCCCEEeeeEEEEcCCcHHHHHHHHHHhccC
Confidence 9999999999999998753 79999999999999999999986 4566554 89999999999999999999999
Q ss_pred CCHHHHhhh
Q 022125 204 GSKEHGSLW 212 (302)
Q Consensus 204 mS~eEAi~l 212 (302)
||++||+++
T Consensus 184 ~s~eea~~l 192 (233)
T 1yar_A 184 LPEKEAVTL 192 (233)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999843
No 12
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.2e-36 Score=269.46 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=148.5
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHH
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~ 132 (302)
.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||++.+.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 85 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 85 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCceeeEeEEEEcC--CCceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCHHH
Q 022125 133 GASKLLANILYSYRGMGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEH 208 (302)
Q Consensus 133 ~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eE 208 (302)
.+|+++++++|.+|+.||++++||||||+ +||+||++| +.|+.+. +|.++|+|+.+++++||+.|+++||++|
T Consensus 86 ~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~id---p~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 162 (205)
T 1iru_J 86 TLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLD---LIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDH 162 (205)
T ss_dssp HHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEEC---TTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEEC---CCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHH
Confidence 99999999999988889999999999995 689999986 4666643 7899999999999999999999999999
Q ss_pred Hhhh
Q 022125 209 GSLW 212 (302)
Q Consensus 209 Ai~l 212 (302)
|+++
T Consensus 163 a~~l 166 (205)
T 1iru_J 163 LFET 166 (205)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9843
No 13
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.1e-36 Score=277.19 Aligned_cols=159 Identities=13% Similarity=0.015 Sum_probs=149.4
Q ss_pred hccccc-CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 49 TLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 49 ~~av~~-GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
++||++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++|+++++||+.+|++.+++.++.+++.|++++++
T Consensus 23 ~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~ 101 (243)
T 1ryp_A 23 FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGY 101 (243)
T ss_dssp HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 789999 9999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH--HHcc--CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc
Q 022125 128 RISVTGASKLLANIL--YSYR--GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK 201 (302)
Q Consensus 128 ~isv~~lAk~Ls~~l--y~~R--~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk 201 (302)
+|+++.+|+++++++ |.+| .|||+|++||||||+ .||+||++| +.|.... ++.++|+++..++++||+.|+
T Consensus 102 ~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~d---p~G~~~~~~~~a~G~gs~~a~~~Le~~~~ 178 (243)
T 1ryp_A 102 DMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTD---PAGYYVGYKATATGPKQQEITTNLENHFK 178 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEc---CCCCEEEEEEEEECCCcHHHHHHHHHHhh
Confidence 999999999999999 5545 589999999999997 799999986 4555554 899999999999999999999
Q ss_pred C-------CCCHHHHhh
Q 022125 202 E-------GGSKEHGSL 211 (302)
Q Consensus 202 ~-------dmS~eEAi~ 211 (302)
+ +||++||++
T Consensus 179 ~~~~~~~~~ms~eea~~ 195 (243)
T 1ryp_A 179 KSKIDHINEESWEKVVE 195 (243)
T ss_dssp HHCSSSCCCSSHHHHHH
T ss_pred hcccccccCCCHHHHHH
Confidence 9 999999983
No 14
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.6e-36 Score=274.44 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=150.7
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhH-----
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL----- 123 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l----- 123 (302)
.+||++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCcCCHHHHHHHHHHHHHHcc--CCCceeeEeEEEEcCC-CceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhh
Q 022125 124 ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWT 199 (302)
Q Consensus 124 ~~g~~isv~~lAk~Ls~~ly~~R--~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~ 199 (302)
+++++++++.+|+++++++|.+| .+||++++||||||++ ||+||++| +.|.... ++.++|+|+.+++++||+.
T Consensus 82 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id---~~G~~~~~~~~aiGsgs~~a~~~Le~~ 158 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVN---LLGVTYSSPTLATGFGAHMANPLLRKV 158 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEE---TTCCEECCSEEECTHHHHHHHHHHTTT
T ss_pred hcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEEC---CCcCeEEcCEEEECcCHHHHHHHHHHh
Confidence 99999999999999999999987 6899999999999986 99999987 4566554 8999999999999999999
Q ss_pred ccC-----CCCHHHHh
Q 022125 200 VKE-----GGSKEHGS 210 (302)
Q Consensus 200 yk~-----dmS~eEAi 210 (302)
|++ +||++||+
T Consensus 159 ~~~~~~~~~ms~eea~ 174 (233)
T 1ryp_N 159 VDRESDIPKTTVQVAE 174 (233)
T ss_dssp CSSGGGGGGCCHHHHH
T ss_pred hccccccCCCCHHHHH
Confidence 999 99999998
No 15
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=4e-36 Score=266.01 Aligned_cols=155 Identities=18% Similarity=0.126 Sum_probs=147.1
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHH
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVT 132 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~ 132 (302)
.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+ ++++++||..+|++.+.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 84 (204)
T 1ryp_J 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPE 84 (204)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHH
Confidence 89999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCceeeEeEEEEcC--CCceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCHHH
Q 022125 133 GASKLLANILYSYRGMGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEH 208 (302)
Q Consensus 133 ~lAk~Ls~~ly~~R~rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eE 208 (302)
.+|+++++++|.+|+.||++++||||||+ +||+||.+| +.|+.+. +|.++|+|+.+++++||+.|+++||++|
T Consensus 85 ~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~id---p~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ee 161 (204)
T 1ryp_J 85 TFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFD---LIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPED 161 (204)
T ss_dssp HHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEEC---TTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEEC---CCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHH
Confidence 99999999999988889999999999996 689999986 4666544 7899999999999999999999999999
Q ss_pred Hhh
Q 022125 209 GSL 211 (302)
Q Consensus 209 Ai~ 211 (302)
|++
T Consensus 162 a~~ 164 (204)
T 1ryp_J 162 LFE 164 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 983
No 16
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.6e-36 Score=272.78 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=150.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 103 (233)
T 1iru_B 25 LAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEP 103 (233)
T ss_dssp HHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 7789999999999999999999999999 789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|++++++++.|+ .|||++++||||||++||+||.+| +.|.... ++.++|+++.+++++||+.|+++
T Consensus 104 ~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id---~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 180 (233)
T 1iru_B 104 IPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSD---PSGAYFAWKATAMGKNYVNGKTFLEKRYNED 180 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEEC---CCCCEEEeeEEEECCCCHHHHHHHHHHhccC
Confidence 999999999999998774 479999999999998899999986 4566554 89999999999999999999999
Q ss_pred CCHHHHhhhh
Q 022125 204 GSKEHGSLWD 213 (302)
Q Consensus 204 mS~eEAi~l~ 213 (302)
||.+||+++.
T Consensus 181 ms~eea~~la 190 (233)
T 1iru_B 181 LELEDAIHTA 190 (233)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998444
No 17
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=3.8e-36 Score=273.45 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=150.8
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.+.++.+++.|+++++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (244)
T 1ryp_C 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNED 104 (244)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999998877779999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
++++.+|+++++++|.+ +.|||++++|||||| ++||+||++| +.|.... ++.++|+|+.+++++||+.|++
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 181 (244)
T 1ryp_C 105 IPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSN---PSGNYTGWKAISVGANTSAAQTLLQMDYKD 181 (244)
T ss_dssp CCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEEC---TTCCEEEBSEEEESTTHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEEC---CCccEEeeeEEEECCCcHHHHHHHHHhhhc
Confidence 99999999999999876 358999999999999 7799999986 4566554 8999999999999999999999
Q ss_pred CCCHHHHhhhh
Q 022125 203 GGSKEHGSLWD 213 (302)
Q Consensus 203 dmS~eEAi~l~ 213 (302)
+||++||+++.
T Consensus 182 ~ms~eea~~la 192 (244)
T 1ryp_C 182 DMKVDDAIELA 192 (244)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999998443
No 18
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.1e-35 Score=264.86 Aligned_cols=154 Identities=47% Similarity=0.747 Sum_probs=146.4
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+++++++|.+|..||++++|||||| ++||+||++| +.|..+. ++.++|+|+.+++++||+.|+++||++||+++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD---SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEE---TTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEc---CCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999999999999999999999 5699999997 4566665 89999999999999999999999999999833
No 19
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=7.8e-36 Score=271.20 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=151.0
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.++++.+++.|+++++++
T Consensus 22 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (241)
T 1ryp_D 22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDP 101 (241)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999999988888899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcC--CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhc-
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTV- 200 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~y- 200 (302)
|+++.+|+++++++|.++ .|||++++||||||+ .||+||++| +.|..+. ++.++|+++.+++++||+.|
T Consensus 102 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 178 (241)
T 1ryp_D 102 VTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTE---PSGIYSSWSAQTIGRNSKTVREFLEKNYD 178 (241)
T ss_dssp CCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEEC---CCCCEEEeeeEEECCCcHHHHHHHHHhhh
Confidence 999999999999999874 279999999999998 799999986 4566665 89999999999999999999
Q ss_pred --cCCCCHHHHhhh
Q 022125 201 --KEGGSKEHGSLW 212 (302)
Q Consensus 201 --k~dmS~eEAi~l 212 (302)
+++||++||+++
T Consensus 179 ~~~~~ms~eea~~l 192 (241)
T 1ryp_D 179 RKEPPATVEECVKL 192 (241)
T ss_dssp TTSCCCSHHHHHHH
T ss_pred cccCCCCHHHHHHH
Confidence 999999999843
No 20
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.7e-35 Score=262.12 Aligned_cols=151 Identities=28% Similarity=0.372 Sum_probs=143.4
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++++|.+|+ ||++++||||||+ +||+||.+| +.|.... ++.++|+|+.+++++||+.|+++||.+||+
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d---~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVP---MGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEEC---TTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEEC---CCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999999987 9999999999998 689999985 3444444 899999999999999999999999999998
No 21
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.5e-36 Score=279.45 Aligned_cols=161 Identities=20% Similarity=0.237 Sum_probs=150.2
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++||++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|+++++||..||++.++++++.+++.|+++++++
T Consensus 32 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~ 110 (264)
T 3h4p_A 32 REAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEE 110 (264)
T ss_dssp HHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCC
Confidence 689999999999999999999999999975 7889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|+++++++|.++ .|||+|++||||||++||+||++| +.|+.+. ++.++|+++.+++++|++.|+++
T Consensus 111 i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iD---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 187 (264)
T 3h4p_A 111 ISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETD---PSGALIEYKATAIGSGRPVVMELLEKEYRDD 187 (264)
T ss_dssp CCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEEC---TTCCCEEESEEEESTTHHHHTTTHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEEC---CCceEEecCeEEECCCHHHHHHHHHHhccCC
Confidence 999999999999998874 379999999999999999999986 4555555 99999999999999999999999
Q ss_pred CCHHHHhhhh
Q 022125 204 GSKEHGSLWD 213 (302)
Q Consensus 204 mS~eEAi~l~ 213 (302)
||++||+.+.
T Consensus 188 ms~eea~~la 197 (264)
T 3h4p_A 188 ITLDEGLELA 197 (264)
T ss_dssp CCSHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998443
No 22
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.9e-36 Score=274.66 Aligned_cols=161 Identities=10% Similarity=-0.040 Sum_probs=150.7
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++||++|+|+|||+++||||||+|+|.+.|.++. ++.+||++|++|+++++||..||++.++++++.+++.|+++++++
T Consensus 27 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 105 (254)
T 1iru_G 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYN 105 (254)
T ss_dssp HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7899999999999999999999999999888874 789999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
|+++.+|+++++++|.++ .|||+|++|||||| ++||+||++| +.|..+. ++.++|+++.+++++|++.|++
T Consensus 106 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 182 (254)
T 1iru_G 106 IPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMID---PSGVSYGYWGCAIGKARQAAKTEIEKLQMK 182 (254)
T ss_dssp CCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEEC---TTCCEEEBSEEEESTTHHHHHHHHTTSCGG
T ss_pred CCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEc---CCCCEEeeeeEEecCccHHHHHHHHHhccC
Confidence 999999999999999886 48999999999999 6799999986 3555555 8999999999999999999999
Q ss_pred CCCHHHHhhhh
Q 022125 203 GGSKEHGSLWD 213 (302)
Q Consensus 203 dmS~eEAi~l~ 213 (302)
+||++||+++.
T Consensus 183 ~ms~eea~~la 193 (254)
T 1iru_G 183 EMTCRDIVKEV 193 (254)
T ss_dssp GCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 99999999654
No 23
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=5.6e-36 Score=272.06 Aligned_cols=161 Identities=18% Similarity=0.183 Sum_probs=150.0
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++ +++.+||++|++++++++||..+|++.+.++++.+++.|+++++++
T Consensus 20 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 98 (242)
T 1ryp_E 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDED 98 (242)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 789999999999999999999999999988777 8999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----------CCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-ceeEecchhhhHHHHH
Q 022125 129 ISVTGASKLLANILYSYR----------GMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCI 196 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----------~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~L 196 (302)
++++.+|+++++++|.++ .|||++++|||||| ++||+||++| +.|..+. ++.++|+|+.+++++|
T Consensus 99 ~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~L 175 (242)
T 1ryp_E 99 INVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAE---PSGTFYRYNAKAIGSGSEGAQAEL 175 (242)
T ss_dssp CCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEEC---CCCCEeccCEEEECCCCHHHHHHH
Confidence 999999999999998853 56999999999999 6799999986 4566665 8999999999999999
Q ss_pred HhhccCCCCHHHHhhhh
Q 022125 197 MWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 197 e~~yk~dmS~eEAi~l~ 213 (302)
|+.|+++||++||+++.
T Consensus 176 e~~~~~~ms~eea~~la 192 (242)
T 1ryp_E 176 LNEWHSSLTLKEAELLV 192 (242)
T ss_dssp HHHCCTTCCHHHHHHHH
T ss_pred HHhhccCCCHHHHHHHH
Confidence 99999999999998554
No 24
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=7e-36 Score=271.51 Aligned_cols=161 Identities=15% Similarity=0.161 Sum_probs=150.0
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++ +++.+||++|++++++++||..||++.+.++++.+++.|+++++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (241)
T 1iru_E 28 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNET 106 (241)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999988877 8999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc---------CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHh
Q 022125 129 ISVTGASKLLANILYSYR---------GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMW 198 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R---------~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~ 198 (302)
++++.+|++++++++.++ .|||++++||||||++||+||.+| +.|..+. ++.++|+|+.+++++||+
T Consensus 107 ~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~ 183 (241)
T 1iru_E 107 MTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMD---PSGTFVQCDARAIGSASEGAQSSLQE 183 (241)
T ss_dssp CCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEEC---CCCcEEecceEEECCCcHHHHHHHHH
Confidence 999999999999997663 469999999999998899999986 4566665 899999999999999999
Q ss_pred hccCCCCHHHHhhhh
Q 022125 199 TVKEGGSKEHGSLWD 213 (302)
Q Consensus 199 ~yk~dmS~eEAi~l~ 213 (302)
.|+++||++||+++.
T Consensus 184 ~~~~~ms~eea~~la 198 (241)
T 1iru_E 184 LYHKSMTLKEAIKSS 198 (241)
T ss_dssp HCCTTCCHHHHHHHH
T ss_pred HhccCCCHHHHHHHH
Confidence 999999999998443
No 25
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=9.5e-36 Score=275.37 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=151.2
Q ss_pred hhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhH----
Q 022125 48 ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHEL---- 123 (302)
Q Consensus 48 ~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l---- 123 (302)
..+++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.++++++.+++.|++
T Consensus 34 ~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 113 (266)
T 1g0u_M 34 TQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPL 113 (266)
T ss_dssp CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred hccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccch
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -hhCCcCCHHHHHHHHHHHHHHcc--CCCceeeEeEEEEcCC-CceeEEEeeecCcccccc-ceeEecchhhhHHHHHHh
Q 022125 124 -ANKRRISVTGASKLLANILYSYR--GMGLSVGTMIAGWDET-VREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMW 198 (302)
Q Consensus 124 -~~g~~isv~~lAk~Ls~~ly~~R--~rP~~vs~IIaG~D~~-Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~ 198 (302)
+++++++++.+|+++++++|.+| .+||++++||||||++ ||+||++| +.|.... ++.++|+|+.+++++||+
T Consensus 114 ~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~ 190 (266)
T 1g0u_M 114 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVN---LLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEE---TTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEEC---CCCCEEeCCEEEEccCHHHHHHHHHH
Confidence 99999999999999999999887 5899999999999986 99999986 4566554 899999999999999999
Q ss_pred hccC-----CCCHHHHh
Q 022125 199 TVKE-----GGSKEHGS 210 (302)
Q Consensus 199 ~yk~-----dmS~eEAi 210 (302)
.|++ +||++||+
T Consensus 191 ~~~~~~~~~~ms~eeA~ 207 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAE 207 (266)
T ss_dssp TCSSGGGGGGCCHHHHH
T ss_pred hhcccccCCCCCHHHHH
Confidence 9999 99999998
No 26
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.1e-35 Score=269.56 Aligned_cols=160 Identities=13% Similarity=0.036 Sum_probs=148.5
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++.++ .+||++|++++++++||..+|++.+.++++.+++.|+++++++
T Consensus 24 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 102 (244)
T 1ryp_G 24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP 102 (244)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999988877655 5999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhh---c
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWT---V 200 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~---y 200 (302)
++++.+|+++++++|.++ .+||++++||||||++||+||++| +.|..+. ++.++|+|+.+++++||+. |
T Consensus 103 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 179 (244)
T 1ryp_G 103 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLE---PSGSYWGYKGAATGKGRQSAKAELEKLVDHH 179 (244)
T ss_dssp CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEEC---CCCCEEEeeEEEECCChHHHHHHHHHhHhhc
Confidence 999999999999998873 389999999999999999999986 4566665 8999999999999999997 9
Q ss_pred cCCCCHHHHhhh
Q 022125 201 KEGGSKEHGSLW 212 (302)
Q Consensus 201 k~dmS~eEAi~l 212 (302)
+++||++||+++
T Consensus 180 ~~~ms~eea~~l 191 (244)
T 1ryp_G 180 PEGLSAREAVKQ 191 (244)
T ss_dssp TTCCCHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999999999843
No 27
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.6e-35 Score=272.69 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=153.0
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.++++++.+++.|+++++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 104 (261)
T 1iru_C 25 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEP 104 (261)
T ss_dssp HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
++++.+|+++++++|.++ .|||+|++||||||+ +||+||.+| +.|..+. ++.++|+|+.+++++|++.|++
T Consensus 105 ~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 181 (261)
T 1iru_C 105 IPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSD---PSGNYGGWKATCIGNNSAAAVSMLKQDYKE 181 (261)
T ss_dssp CCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEE---TTTEEEECSEEEESTTTTHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEEC---CCceEEeeeeEEeCcccHHHHHHHHHhhcc
Confidence 999999999999999885 479999999999995 789999987 4566665 8999999999999999999999
Q ss_pred -CCCHHHHhhhh
Q 022125 203 -GGSKEHGSLWD 213 (302)
Q Consensus 203 -dmS~eEAi~l~ 213 (302)
+||++||+.+.
T Consensus 182 ~~ms~eeA~~la 193 (261)
T 1iru_C 182 GEMTLKSALALA 193 (261)
T ss_dssp TCCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 99999999776
No 28
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.7e-35 Score=258.42 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=143.4
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcc-C-CCceeeEeEEEEcC--CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYR-G-MGLSVGTMIAGWDE--TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R-~-rP~~vs~IIaG~D~--~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++++|.++ . +||++++||||||+ +||+||.+| +.|.... ++.++|+|+.+++++||+.|+++||++||+
T Consensus 82 ~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~id---p~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 82 SFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID---YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEEC---TTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEEC---CCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999975 3 49999999999996 699999986 4566554 899999999999999999999999999998
No 29
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1.6e-35 Score=270.72 Aligned_cols=161 Identities=14% Similarity=0.175 Sum_probs=150.4
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++++++++||..+|++.+.++++.+++.|+++++++
T Consensus 23 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (248)
T 1iru_D 23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDP 101 (248)
T ss_dssp HHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 789999999999999999999999999977 6888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEc-CCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWD-ETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D-~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~ 202 (302)
|+++.+|+++++++|.++ .|||+|++|||||| ++||+||.+| +.|.... ++.++|+++.+++++||+.|++
T Consensus 102 ~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~~ 178 (248)
T 1iru_D 102 VTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTD---PSGTYHAWKANAIGRGAKSVREFLEKNYTD 178 (248)
T ss_dssp CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHTTTCCS
T ss_pred CCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEc---CCCcEEEeeEEEECCCcHHHHHHHHHhhcc
Confidence 999999999999999875 27999999999999 6799999986 4566554 8999999999999999999999
Q ss_pred CC--CHHHHhhhh
Q 022125 203 GG--SKEHGSLWD 213 (302)
Q Consensus 203 dm--S~eEAi~l~ 213 (302)
+| |++||+++.
T Consensus 179 ~m~~s~eea~~la 191 (248)
T 1iru_D 179 EAIETDDLTIKLV 191 (248)
T ss_dssp STTCSHHHHHHHH
T ss_pred cccCCHHHHHHHH
Confidence 99 999998555
No 30
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.1e-35 Score=269.10 Aligned_cols=160 Identities=15% Similarity=0.068 Sum_probs=148.9
Q ss_pred hccccc-CceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 49 TLKHAK-GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 49 ~~av~~-GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
++||++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..||++.+.++++.+++.|++++++
T Consensus 29 ~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 107 (246)
T 1iru_A 29 FKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGY 107 (246)
T ss_dssp HHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 678999 9999999999999999999999 79999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHc--c--CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc
Q 022125 128 RISVTGASKLLANILYSY--R--GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK 201 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~--R--~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk 201 (302)
+++++.+|++++++++.+ + .|||+|++||||||+ +||+||++| +.|..+. ++.++|+|+.+++++||+.|+
T Consensus 108 ~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 184 (246)
T 1iru_A 108 EIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCD---PAGYYCGFKATAAGVKQTESTSFLEKKVK 184 (246)
T ss_dssp CCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEEC---TTSCEEEBSEEEEETTHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEc---CCeeEEEeeEEEECCCcHHHHHHHHHhhc
Confidence 999999999999997544 3 589999999999997 799999986 4566555 899999999999999999999
Q ss_pred C--CCCHHHHhhh
Q 022125 202 E--GGSKEHGSLW 212 (302)
Q Consensus 202 ~--dmS~eEAi~l 212 (302)
+ +||++||+++
T Consensus 185 ~~~~ms~eea~~l 197 (246)
T 1iru_A 185 KKFDWTFEQTVET 197 (246)
T ss_dssp SCCCCCHHHHHHH
T ss_pred ccCCCCHHHHHHH
Confidence 9 9999999844
No 31
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2.1e-35 Score=276.91 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=150.2
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++||++|+|+|||+++||||||+|+|.+.|.++.+ +.+||++|++|+++++||+.+|++.++++++.+++.|+++++++
T Consensus 28 ~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~ 106 (288)
T 3nzj_F 28 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTP 106 (288)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 78999999999999999999999999998877665 77999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhh---c
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWT---V 200 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~---y 200 (302)
|+++.+|+++++++|.|+ .|||+|++||||||++||+||++| +.|..+. ++.++|+++.+++++|++. |
T Consensus 107 i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iD---p~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~ 183 (288)
T 3nzj_F 107 IPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLE---PSGSYWGYKGAATGKGRQSAKAELEKLVDHH 183 (288)
T ss_dssp CCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEEC---CCCCEEEcCEEEEcCcHHHHHHHHHHhcccc
Confidence 999999999999999874 479999999999999999999986 4565554 9999999999999999999 9
Q ss_pred cCCCCHHHHhhhh
Q 022125 201 KEGGSKEHGSLWD 213 (302)
Q Consensus 201 k~dmS~eEAi~l~ 213 (302)
+++||++||+++.
T Consensus 184 ~~~ms~eEAv~la 196 (288)
T 3nzj_F 184 PEGLSAREAVKQA 196 (288)
T ss_dssp TTCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9999999999655
No 32
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7.9e-35 Score=265.15 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=143.8
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..||++.+.++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++++|.++ +||++++||||||++||+||++| +.|.... ++.++|+|+.+++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~~-~p~~v~llvaG~D~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 3unf_H 81 RILRQTLFRYQ-GHVGASLVVGGVDLNGPQLYEVH---PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQ 152 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETTEEEEEEEC---TTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhcC-CCccEEEEEEEEeCCCCEEEEEC---CCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHH
Confidence 99999999874 59999999999999999999986 4555555 999999999999999999999999999998
No 33
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=2.8e-35 Score=266.35 Aligned_cols=159 Identities=18% Similarity=0.129 Sum_probs=146.9
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++++++++||..||++.+++.++.+++.|+++++++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 101 (233)
T 1ryp_F 25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRK 101 (233)
T ss_dssp HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999997732 478999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc----cCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC-
Q 022125 129 ISVTGASKLLANILYSY----RGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE- 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~----R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~- 202 (302)
|+++.+|++++++++.+ ..|||++++||||||++||+||++| +.|..+. ++.++|+++.+++++||+.|++
T Consensus 102 ~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ 178 (233)
T 1ryp_F 102 LAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQ---PSGNVTELYGTAIGARSQGAKTYLERTLDTF 178 (233)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEEC---TTSCEEEESEEEESTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEEC---CCCCeeeeeEEEECCCcHHHHHHHHHHhccc
Confidence 99999999999999765 3479999999999999999999986 4566555 8999999999999999999999
Q ss_pred -CC--CHHHHhhhh
Q 022125 203 -GG--SKEHGSLWD 213 (302)
Q Consensus 203 -dm--S~eEAi~l~ 213 (302)
+| |++||+++.
T Consensus 179 ~~m~~s~eea~~~a 192 (233)
T 1ryp_F 179 IKIDGNPDELIKAG 192 (233)
T ss_dssp TTCCSCHHHHHHHH
T ss_pred cccCCCHHHHHHHH
Confidence 99 999998544
No 34
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.8e-35 Score=262.53 Aligned_cols=151 Identities=26% Similarity=0.307 Sum_probs=143.9
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++.+|.++ +||++++||||+|++||+||++| +.|.... ++.++|+|+.+++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDPTGSHLFSIH---AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAI 152 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEETTEEEEEEEC---TTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeCCCCEEEEEC---CCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHH
Confidence 99999999875 69999999999999999999986 4566554 899999999999999999999999999998
No 35
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=9.1e-35 Score=256.08 Aligned_cols=149 Identities=26% Similarity=0.349 Sum_probs=142.0
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.+|
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcC-CCceeEEEeeecCcccccc--ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA--SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~--~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++++|.+|. ||++++||||||+ .||+||. |+|+.+. +++++|+|+.+++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~~~-p~~v~~lvaG~D~~~~p~ly~-----p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 81 NVVKNISYKYRE-DLLAHLIVAGWDQREGGQVYG-----TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHTTT-TCCCCEEEEEEETTTEEEEEE-----CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhcCC-CceEEEEEEEEeCCCCcEEEE-----ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 999999998864 9999999999998 5899886 5788764 788899999999999999999999999998
No 36
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.5e-35 Score=266.59 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=148.5
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++++++++||..+|++.+.+.++.+++.|+++++++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 106 (246)
T 1j2p_A 28 REAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIP 106 (246)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 679999999999999999999999999965 5668899999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCC
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++++.+|+++++++|.|+ .|||++++|||||| +||+||.+| +.|..+. ++.++|+|+.+++++|++.|+++
T Consensus 107 ~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 182 (246)
T 1j2p_A 107 ITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETD---PSGALLEYKATAIGMGRMAVTEFFEKEYRDD 182 (246)
T ss_dssp CCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEEC---TTCCEEEBSEEEESTTHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEEC---CCceEEeeeEEEECCCcHHHHHHHHHHhccC
Confidence 999999999999998774 36999999999999 999999986 4566655 89999999999999999999999
Q ss_pred CCHHHHhhhh
Q 022125 204 GSKEHGSLWD 213 (302)
Q Consensus 204 mS~eEAi~l~ 213 (302)
||++||+.+.
T Consensus 183 ms~eea~~la 192 (246)
T 1j2p_A 183 LSFDDAMVLG 192 (246)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9999998544
No 37
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=7.5e-35 Score=273.87 Aligned_cols=160 Identities=20% Similarity=0.226 Sum_probs=150.2
Q ss_pred hhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCC
Q 022125 48 ATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 127 (302)
Q Consensus 48 ~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~ 127 (302)
.++|+++|+|+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..+|++.++++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHccC---CCceeeEeEEEEcCC-C-----ceeEEEeeecCccccc-c--ceeEecchhhhHHHH
Q 022125 128 RISVTGASKLLANILYSYRG---MGLSVGTMIAGWDET-V-----REFMFQVFCFAFASLI-A--SLLSCLSVGCRVLGC 195 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R~---rP~~vs~IIaG~D~~-G-----p~LY~idyS~D~Gg~~-~--~~~a~Gsgs~~a~g~ 195 (302)
+++++.+|++|++++|.++. +||+|++||||||++ | |+||++| +.|+.+ . ++.++|+|+.+++++
T Consensus 138 ~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iD---p~G~~~e~~~~~~AiGsgs~~a~~~ 214 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYD---VVGGRYEERAGYHAVGSGSLFAKSA 214 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEEC---SSSCEEECCSSEEEESTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEEC---CCCeEEecCCCeEEEecCcHHHHHH
Confidence 99999999999999998764 899999999999986 7 8999986 456665 4 799999999999999
Q ss_pred HHhhccCCCCHHHHh
Q 022125 196 IMWTVKEGGSKEHGS 210 (302)
Q Consensus 196 Le~~yk~dmS~eEAi 210 (302)
||+.|+++||++||+
T Consensus 215 Le~~y~~~ms~eEAi 229 (294)
T 1q5r_H 215 LKKIYSPDSDEETAL 229 (294)
T ss_dssp HHHHCCSSCCHHHHH
T ss_pred HHHhccCCCCHHHHH
Confidence 999999999999998
No 38
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.5e-35 Score=274.96 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=137.4
Q ss_pred cccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCH
Q 022125 52 HAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISV 131 (302)
Q Consensus 52 v~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv 131 (302)
+.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.++++++.+++.|++.+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHccC---CCceeeEeEEEEcCC-C-----ceeEEEeeecCccccc--c-ceeEecchhhhHHHHHHhh
Q 022125 132 TGASKLLANILYSYRG---MGLSVGTMIAGWDET-V-----REFMFQVFCFAFASLI--A-SLLSCLSVGCRVLGCIMWT 199 (302)
Q Consensus 132 ~~lAk~Ls~~ly~~R~---rP~~vs~IIaG~D~~-G-----p~LY~idyS~D~Gg~~--~-~~~a~Gsgs~~a~g~Le~~ 199 (302)
+.+|+++++++|.++. +||+|++||||||++ | |+||++| +.|+.+ . ++.++|+|+.+++++|++.
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iD---p~G~~~e~~~~~~aiGsgs~~a~~~Le~~ 210 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFD---AAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEEC---TTSCEEECSSSEEEESTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEEC---CCCcEEecCCCEEEEecCHHHHHHHHHHh
Confidence 9999999999999864 699999999999986 4 8999986 467777 4 8999999999999999999
Q ss_pred ccCCCCHHHHhh
Q 022125 200 VKEGGSKEHGSL 211 (302)
Q Consensus 200 yk~dmS~eEAi~ 211 (302)
|+++||.+||++
T Consensus 211 ~~~~ms~eEAi~ 222 (291)
T 2jay_A 211 YSQVTDGDSGLR 222 (291)
T ss_dssp GGGCCSHHHHHH
T ss_pred cCCCCCHHHHHH
Confidence 999999999983
No 39
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.5e-34 Score=255.29 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=141.9
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
+|+|||+++||||||+|+|.+.|+++.+++.+||++|++|+++++||..||++.+.++++.+++.|+++++++++++.+|
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHccC-CCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANIL-YSYRG-MGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~l-y~~R~-rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++.+ |.++. +||++++||||||+ +||+||.+| +.|.... ++.++|+|+.+++++||+.|+++||++||+
T Consensus 82 ~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id---~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMD---YLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEEC---TTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEEC---CCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHH
Confidence 9999876 55443 69999999999997 689999986 4566554 899999999999999999999999999998
No 40
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.6e-34 Score=265.65 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=146.3
Q ss_pred CCCCCcchhHhhhhh--hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHH
Q 022125 34 PLSTDFDEFQKDTKA--TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWH 111 (302)
Q Consensus 34 p~~~~~~~~~~~~~~--~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~ 111 (302)
|-...|..+.++..+ ++||++|+|+|||+++||||||+|+| +++.+||++|++|+++++||+.+|++.+.
T Consensus 4 ~~~~~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~ 75 (248)
T 3mi0_A 4 PYFISPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLR 75 (248)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHH
T ss_pred CccCCHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHH
Confidence 444455556654333 78999999999999999999999999 45889999999999999999999999999
Q ss_pred HHHHHHHHHhhHhhC-CcCCHHHHHHHHHHH-HHHc--cCCCceeeEeEEEEcC----CCceeEEEeeecCccccc-c-c
Q 022125 112 RNLGIKCRLHELANK-RRISVTGASKLLANI-LYSY--RGMGLSVGTMIAGWDE----TVREFMFQVFCFAFASLI-A-S 181 (302)
Q Consensus 112 ~~lr~e~~~y~l~~g-~~isv~~lAk~Ls~~-ly~~--R~rP~~vs~IIaG~D~----~Gp~LY~idyS~D~Gg~~-~-~ 181 (302)
+.++.+++.|+++++ ++++++.+++++++. .+.| +.|||+|++||||||+ .||+||++| ++|+.. . +
T Consensus 76 ~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~D---p~G~~~~e~~ 152 (248)
T 3mi0_A 76 RGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRIT---YDGSIADEPH 152 (248)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEEC---TTSCEEEESS
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEEC---CCeEEeeccc
Confidence 999999999999999 999999999999944 3333 5789999999999998 799999997 467777 3 8
Q ss_pred eeEecchhhhHHHHHHhhccCCCCHHHHhhh
Q 022125 182 LLSCLSVGCRVLGCIMWTVKEGGSKEHGSLW 212 (302)
Q Consensus 182 ~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l 212 (302)
+.++|+++.+++++||+.|+++||++||+.+
T Consensus 153 ~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~l 183 (248)
T 3mi0_A 153 FVVMGGTTEPIANALKESYAENASLTDALRI 183 (248)
T ss_dssp EEEESSCHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred EEEECccHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999944
No 41
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.7e-34 Score=263.88 Aligned_cols=160 Identities=14% Similarity=0.055 Sum_probs=148.6
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHH-hhHhhCC
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRL-HELANKR 127 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~-y~l~~g~ 127 (302)
++|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++++++++||..||++.+.++++.+++. |+..++.
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 103 (250)
T 1ryp_B 25 LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGE 103 (250)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSS
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999999999999999999999998 8999999999999999999999999999999999999999999 9999999
Q ss_pred cCCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcC-CCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhcc
Q 022125 128 RISVTGASKLLANILYSYR----GMGLSVGTMIAGWDE-TVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVK 201 (302)
Q Consensus 128 ~isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~-~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk 201 (302)
+++++.+++.++++++.++ .|||++++||||||+ .||+||++| +.|.... ++.++|+|+.+++++||+.|+
T Consensus 104 ~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (250)
T 1ryp_B 104 YPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVD---PSGSYFPWKATAIGKGSVAAKTFLEKRWN 180 (250)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEEC---TTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEEC---CCCCEEeeceeEecCccHHHHHHHHHHhc
Confidence 9999999999999887653 479999999999997 589999986 4566554 899999999999999999999
Q ss_pred CCCCHHHHhhh
Q 022125 202 EGGSKEHGSLW 212 (302)
Q Consensus 202 ~dmS~eEAi~l 212 (302)
++||++||+++
T Consensus 181 ~~ms~eea~~l 191 (250)
T 1ryp_B 181 DELELEDAIHI 191 (250)
T ss_dssp TTCCHHHHHHH
T ss_pred cCCCHHHHHHH
Confidence 99999999844
No 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.4e-34 Score=259.54 Aligned_cols=151 Identities=23% Similarity=0.289 Sum_probs=143.6
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..||++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccCCCCHHHHh
Q 022125 136 KLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKEGGSKEHGS 210 (302)
Q Consensus 136 k~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi 210 (302)
+++++.+|.++ +||++++||||||++||+||.+| +.|.... ++.++|+|+++++++||+.|+++||++||+
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~ 152 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDVTGPHLYSIY---PHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAK 152 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECSSCEEEEEEC---TTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHH
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcCCCCEEEEEC---CCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHH
Confidence 99999999876 58999999999999999999986 4566554 899999999999999999999999999998
No 43
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=1.1e-34 Score=267.75 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=147.5
Q ss_pred hcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCc
Q 022125 49 TLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRR 128 (302)
Q Consensus 49 ~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~ 128 (302)
++|+++|+|+|||+++||||||+|+|.+.+. .++.+||++|++++++++||..+|++.++++++.+++.|+++++++
T Consensus 26 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 102 (263)
T 1iru_F 26 MEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRP 102 (263)
T ss_dssp HHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7899999999999999999999999999774 2588999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcc----CCCceeeEeEEEEcCCCceeEEEeeecCcccccc-ceeEecchhhhHHHHHHhhccC-
Q 022125 129 ISVTGASKLLANILYSYR----GMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-SLLSCLSVGCRVLGCIMWTVKE- 202 (302)
Q Consensus 129 isv~~lAk~Ls~~ly~~R----~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~~~a~Gsgs~~a~g~Le~~yk~- 202 (302)
|+++.+|+++++++|.++ .|||+|++||||||++||+||++| +.|..+. ++.++|+++.+++++||+.|++
T Consensus 103 i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~id---p~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 179 (263)
T 1iru_F 103 LPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTC---PSANYFDCRAMSIGARSQSARTYLERHMSEF 179 (263)
T ss_dssp CCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEEC---SSSCEEEESEEEESTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEEC---CCCCEEEeeEEEcCcccHHHHHHHHHHhccc
Confidence 999999999999998763 479999999999999999999986 3566555 8999999999999999999998
Q ss_pred -CCCHHHHhhhh
Q 022125 203 -GGSKEHGSLWD 213 (302)
Q Consensus 203 -dmS~eEAi~l~ 213 (302)
+||++||+++.
T Consensus 180 ~~ms~eea~~la 191 (263)
T 1iru_F 180 MECNLNELVKHG 191 (263)
T ss_dssp TTCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 99999999665
No 44
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=4.9e-34 Score=258.92 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=144.2
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGAS 135 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~lA 135 (302)
||+|||+++||||||+|+|.+.|+++.+++.+||++|++++++++||..||++.+.++++.+++.|+++++++++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcc---CCCceeeEeEEEEcCC-C-----ceeEEEeeecCccccc-c--ceeEecchhhhHHHHHHhhccCC
Q 022125 136 KLLANILYSYR---GMGLSVGTMIAGWDET-V-----REFMFQVFCFAFASLI-A--SLLSCLSVGCRVLGCIMWTVKEG 203 (302)
Q Consensus 136 k~Ls~~ly~~R---~rP~~vs~IIaG~D~~-G-----p~LY~idyS~D~Gg~~-~--~~~a~Gsgs~~a~g~Le~~yk~d 203 (302)
++|++++|.++ .+||+|++||||||++ | |+||++| +.|+.+ . ++.++|+|+.+++++||+.|+++
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~id---p~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYD---VVGGRYEERAGYHAVGSGSLFAKSALKKIYSPD 157 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEEC---TTSCEEECCSSEEEESTTHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEEC---CCCceEEeCCCeEEECCCHHHHHHHHHhhcCCC
Confidence 99999999875 5899999999999987 7 8999986 456665 4 79999999999999999999999
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
||++||+
T Consensus 158 ms~eeA~ 164 (235)
T 1q5q_H 158 SDEETAL 164 (235)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9999998
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=4.6e-34 Score=263.30 Aligned_cols=170 Identities=12% Similarity=0.141 Sum_probs=147.5
Q ss_pred CCCCCCcchhHhh--hhhhcccccCceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEecCcEEEEEecChhhHHHH
Q 022125 33 LPLSTDFDEFQKD--TKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFW 110 (302)
Q Consensus 33 ~p~~~~~~~~~~~--~~~~~av~~GtTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I~~~i~ia~SG~~aD~q~l 110 (302)
.|..-+|..+.+. .-.++||++|+|+|||+++||||||+|+| +++.+||++|++|+++++||..+|++.+
T Consensus 3 ~p~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l 74 (259)
T 1q5q_A 3 MPYYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENL 74 (259)
T ss_dssp ------CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHH
Confidence 4666677777742 22378999999999999999999999999 3678999999999999999999999999
Q ss_pred HHHHHHHHHHhhHhhC-CcCCHHHHHHHHHHHH---HHccCCCceeeEeEEEEc----CCCceeEEEeeecCccccc-c-
Q 022125 111 HRNLGIKCRLHELANK-RRISVTGASKLLANIL---YSYRGMGLSVGTMIAGWD----ETVREFMFQVFCFAFASLI-A- 180 (302)
Q Consensus 111 ~~~lr~e~~~y~l~~g-~~isv~~lAk~Ls~~l---y~~R~rP~~vs~IIaG~D----~~Gp~LY~idyS~D~Gg~~-~- 180 (302)
+++++.+++.|++.++ ++|+++.+|+++++++ |.++.+||+|++|||||| +.||+||++| +.|+.+ .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~id---p~G~~~~~~ 151 (259)
T 1q5q_A 75 RRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRIT---YDGSIVDEQ 151 (259)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEE---TTSCEEEES
T ss_pred HHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEEC---CCCceeeCC
Confidence 9999999999999988 4999999999999953 555789999999999999 6799999997 467777 4
Q ss_pred ceeEecchhhhHHHHHHhhccCCCCHHHHhhhh
Q 022125 181 SLLSCLSVGCRVLGCIMWTVKEGGSKEHGSLWD 213 (302)
Q Consensus 181 ~~~a~Gsgs~~a~g~Le~~yk~dmS~eEAi~l~ 213 (302)
++.++|++++.++++|++.|+++||++||+.+.
T Consensus 152 ~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la 184 (259)
T 1q5q_A 152 HFVVMGGTTEPIATAMRESYRADLDLEAAVGIA 184 (259)
T ss_dssp SEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHhhccCCCCHHHHHHHH
Confidence 799999999999999999999999999999554
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.96 E-value=2.3e-29 Score=219.92 Aligned_cols=145 Identities=18% Similarity=0.123 Sum_probs=128.7
Q ss_pred ccCceEEEEEeCCeEEEEEeCccCCCCe-eeccccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCC
Q 022125 53 AKGTTTLAFIFKEGVMVAADSRASMGGY-ISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRIS 130 (302)
Q Consensus 53 ~~GtTvIgIk~kDGVVLAaDtr~s~g~l-i~s~~~~KI~~I-~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~is 130 (302)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|+++++||..||++.+.++++.+++.|+ | ..
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~~ 77 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--NL 77 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--CH
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--Ch
Confidence 6799999999999999999999999988 999999999999 999999999999999999999999999998 3 33
Q ss_pred HHHHHHHHHHHHHHccC-CCceeeEeEEEEcCCCceeEEEeeecCcccccc---ceeEecchhhhHHHHHHhhccC---C
Q 022125 131 VTGASKLLANILYSYRG-MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA---SLLSCLSVGCRVLGCIMWTVKE---G 203 (302)
Q Consensus 131 v~~lAk~Ls~~ly~~R~-rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~---~~~a~Gsgs~~a~g~Le~~yk~---d 203 (302)
++.++ .+++.++.+++ |||++++||| +||+||++| +.|..+. ++.++|+|+.+++++||+.|++ +
T Consensus 78 ~~~~~-~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d---~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 78 KRAAV-ELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVS---GTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp HHHHH-HHHHHHHHCTTGGGCCCCEEEE----CSSCEEEEC---TTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHH-HHHHHHHhhhCcCcceEEEEEE----cCCeEEEEC---CCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCC
Confidence 44444 46777877776 6999999999 479999986 4566554 8999999999999999999998 9
Q ss_pred CCHHHHh
Q 022125 204 GSKEHGS 210 (302)
Q Consensus 204 mS~eEAi 210 (302)
||.+|++
T Consensus 150 mt~eel~ 156 (180)
T 2z3b_A 150 MSASEIA 156 (180)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9999954
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.96 E-value=8e-29 Score=213.99 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=124.6
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I-~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++++++++||..||++.+.++++.+++.|+++ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999999855 26777
Q ss_pred HHHHHHHHHHccC-CCceeeEeEEEEcCCCceeEEEeeecCcccccc-c--eeEecchhhhHHHHHHhhcc-CCCCHHHH
Q 022125 135 SKLLANILYSYRG-MGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-S--LLSCLSVGCRVLGCIMWTVK-EGGSKEHG 209 (302)
Q Consensus 135 Ak~Ls~~ly~~R~-rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~--~~a~Gsgs~~a~g~Le~~yk-~dmS~eEA 209 (302)
+++. +.++++++ +||++++|++ | ||+||++| +.|..+. + +.++|+|+.+++++||+.|+ ++||.+|.
T Consensus 76 ~~l~-~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d---~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~~~l 147 (171)
T 1m4y_A 76 VELA-KDWRTDRVLRRLEALLLVA--D--KENIFIIS---GNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREI 147 (171)
T ss_dssp HHHH-HHHHHCTTGGGCCCEEEEE--C--SSCEEEEC---TTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHH-HHHHHhCCCCceEEEEEEE--c--CCEEEEEC---CCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCHHHH
Confidence 7764 47777776 5699998888 5 89999986 4565554 5 99999999999999999999 99997543
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.96 E-value=8.4e-29 Score=214.67 Aligned_cols=142 Identities=20% Similarity=0.207 Sum_probs=126.1
Q ss_pred ceEEEEEeCCeEEEEEeCccCCCCeeeccccceEEEe-cCcEEEEEecChhhHHHHHHHHHHHHHHhhHhhCCcCCHHHH
Q 022125 56 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEI-NPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGA 134 (302)
Q Consensus 56 tTvIgIk~kDGVVLAaDtr~s~g~li~s~~~~KI~~I-~~~i~ia~SG~~aD~q~l~~~lr~e~~~y~l~~g~~isv~~l 134 (302)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|+++++||..||++.+.++++.+++.|++ ++...
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6999999999999999999999999999999999999 9999999999999999999999999999985 45667
Q ss_pred HHHHHHHHHHccCCCceeeEeEEEEcCCCceeEEEeeecCcccccc-c---eeEecchhhhHHHHHHhhcc-CCCCHHHH
Q 022125 135 SKLLANILYSYRGMGLSVGTMIAGWDETVREFMFQVFCFAFASLIA-S---LLSCLSVGCRVLGCIMWTVK-EGGSKEHG 209 (302)
Q Consensus 135 Ak~Ls~~ly~~R~rP~~vs~IIaG~D~~Gp~LY~idyS~D~Gg~~~-~---~~a~Gsgs~~a~g~Le~~yk-~dmS~eEA 209 (302)
+..|++.++.+|+.| .++++|+|+| ||+||++| +.|.... + +.++|+|+.+++++||+.|+ ++||.+|.
T Consensus 75 ~~~l~~~~~~~~~~r-~~~~~l~g~d--~p~Ly~~d---~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~~l 148 (174)
T 1g3k_A 75 AVELAKDWRTDRALR-KLEAMLIVAD--EKESLIIT---GIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEI 148 (174)
T ss_dssp HHHHHHHHHHSTTGG-GCCCEEEEEC--SSCEEEEE---TTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHhccCcC-cceEEEEEEC--CCEEEEEc---CCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHHHH
Confidence 778889998887744 2568888998 79999987 4555554 5 99999999999999999999 99996643
Done!