Query 022126
Match_columns 302
No_of_seqs 226 out of 656
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 08:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4739 Uncharacterized protei 99.3 7.4E-11 1.6E-15 108.6 15.4 148 1-174 4-155 (233)
2 KOG0823 Predicted E3 ubiquitin 99.1 1.4E-11 3E-16 112.8 2.6 53 1-54 48-103 (230)
3 PF14634 zf-RING_5: zinc-RING 99.1 7.9E-11 1.7E-15 81.7 3.3 42 2-43 1-44 (44)
4 smart00504 Ubox Modified RING 99.1 1.1E-10 2.3E-15 85.3 3.7 51 1-52 2-52 (63)
5 PLN03208 E3 ubiquitin-protein 99.1 8.6E-11 1.9E-15 105.6 3.4 52 1-53 19-86 (193)
6 PF13923 zf-C3HC4_2: Zinc fing 98.9 4.8E-10 1.1E-14 75.7 2.7 38 3-41 1-39 (39)
7 PF15227 zf-C3HC4_4: zinc fing 98.9 8.7E-10 1.9E-14 76.2 3.2 38 3-41 1-42 (42)
8 TIGR00570 cdk7 CDK-activating 98.9 6.2E-08 1.3E-12 92.8 16.4 49 2-50 5-58 (309)
9 PF13639 zf-RING_2: Ring finge 98.8 1.9E-09 4.1E-14 74.3 2.5 41 2-42 2-44 (44)
10 TIGR00599 rad18 DNA repair pro 98.7 8E-09 1.7E-13 102.1 2.9 47 1-48 27-73 (397)
11 PF13920 zf-C3HC4_3: Zinc fing 98.7 1.9E-08 4.1E-13 71.2 3.8 45 1-46 3-48 (50)
12 cd00162 RING RING-finger (Real 98.7 1.8E-08 4E-13 67.2 3.3 44 2-45 1-45 (45)
13 PF00097 zf-C3HC4: Zinc finger 98.6 2.2E-08 4.7E-13 67.7 2.6 38 3-41 1-41 (41)
14 KOG2164 Predicted E3 ubiquitin 98.6 1.9E-08 4E-13 101.1 2.5 52 1-53 187-243 (513)
15 PF04564 U-box: U-box domain; 98.6 5.4E-08 1.2E-12 74.4 3.4 51 1-52 5-56 (73)
16 PF14835 zf-RING_6: zf-RING of 98.5 2.6E-08 5.7E-13 74.9 1.0 47 1-50 8-55 (65)
17 KOG0287 Postreplication repair 98.5 4.8E-08 1E-12 94.2 1.2 49 1-50 24-72 (442)
18 COG5432 RAD18 RING-finger-cont 98.4 8.5E-08 1.8E-12 90.9 2.1 46 1-47 26-71 (391)
19 smart00184 RING Ring finger. E 98.4 2.7E-07 5.9E-12 59.3 3.5 38 3-41 1-39 (39)
20 PF13445 zf-RING_UBOX: RING-ty 98.3 3.6E-07 7.8E-12 63.7 2.4 36 3-39 1-43 (43)
21 KOG3039 Uncharacterized conser 98.3 4.1E-07 8.9E-12 84.6 3.0 54 1-54 222-278 (303)
22 COG5152 Uncharacterized conser 98.1 6.3E-07 1.4E-11 81.2 0.5 46 1-47 197-242 (259)
23 PF04641 Rtf2: Rtf2 RING-finge 98.1 1.6E-06 3.4E-11 81.2 3.1 57 1-60 114-173 (260)
24 KOG0804 Cytoplasmic Zn-finger 98.1 3.5E-05 7.7E-10 76.9 12.1 43 2-46 177-222 (493)
25 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.9E-06 6.3E-11 65.1 3.4 41 2-42 21-73 (73)
26 KOG1813 Predicted E3 ubiquitin 98.1 1E-06 2.2E-11 83.7 0.9 46 1-47 242-287 (313)
27 KOG2177 Predicted E3 ubiquitin 98.0 1.9E-06 4.1E-11 76.4 1.7 42 1-43 14-55 (386)
28 COG5222 Uncharacterized conser 97.8 1.1E-05 2.5E-10 77.0 3.4 43 1-44 275-319 (427)
29 KOG0802 E3 ubiquitin ligase [P 97.6 3.2E-05 7E-10 79.3 2.4 48 2-49 293-344 (543)
30 KOG0824 Predicted E3 ubiquitin 97.6 2.7E-05 5.9E-10 74.3 1.5 45 2-47 9-54 (324)
31 KOG0311 Predicted E3 ubiquitin 97.6 6.8E-05 1.5E-09 73.0 4.1 47 1-47 44-91 (381)
32 KOG4159 Predicted E3 ubiquitin 97.5 3.7E-05 7.9E-10 76.4 2.1 46 1-47 85-130 (398)
33 PF11789 zf-Nse: Zinc-finger o 97.5 4.9E-05 1.1E-09 56.0 1.9 39 1-40 12-53 (57)
34 KOG0827 Predicted E3 ubiquitin 97.4 0.0016 3.5E-08 64.4 11.3 50 2-51 6-61 (465)
35 KOG2660 Locus-specific chromos 97.3 4.8E-05 1E-09 73.4 0.1 48 1-48 16-63 (331)
36 COG5243 HRD1 HRD ubiquitin lig 97.2 0.00016 3.4E-09 71.1 2.1 45 2-46 289-345 (491)
37 KOG1645 RING-finger-containing 97.2 0.0014 3.1E-08 65.0 8.2 49 1-49 5-59 (463)
38 KOG3800 Predicted E3 ubiquitin 97.1 0.0054 1.2E-07 58.6 11.4 49 2-50 2-55 (300)
39 KOG4628 Predicted E3 ubiquitin 97.0 0.00028 6.2E-09 68.9 2.1 46 2-47 231-279 (348)
40 KOG4185 Predicted E3 ubiquitin 96.9 0.0091 2E-07 56.3 10.8 45 1-45 4-54 (296)
41 KOG0297 TNF receptor-associate 96.9 0.0004 8.6E-09 68.9 1.6 50 1-51 22-72 (391)
42 COG5220 TFB3 Cdk activating ki 96.8 0.024 5.3E-07 53.2 12.7 47 2-48 12-66 (314)
43 PF12861 zf-Apc11: Anaphase-pr 96.8 0.0013 2.8E-08 52.3 3.6 33 14-46 47-82 (85)
44 KOG0825 PHD Zn-finger protein 96.8 0.00041 9E-09 73.3 0.7 47 2-48 125-173 (1134)
45 KOG4172 Predicted E3 ubiquitin 96.7 0.00029 6.2E-09 51.9 -0.5 44 2-46 9-54 (62)
46 KOG1002 Nucleotide excision re 96.7 0.0007 1.5E-08 69.1 1.3 46 2-48 538-588 (791)
47 KOG1814 Predicted E3 ubiquitin 96.6 0.00098 2.1E-08 66.2 2.0 44 1-44 185-238 (445)
48 PHA02926 zinc finger-like prot 96.6 0.00097 2.1E-08 61.7 1.8 33 2-34 172-212 (242)
49 KOG1001 Helicase-like transcri 96.4 0.0011 2.3E-08 70.1 1.1 49 2-52 456-506 (674)
50 KOG4692 Predicted E3 ubiquitin 96.2 0.0022 4.7E-08 62.9 1.9 45 2-47 424-468 (489)
51 PF10186 Atg14: UV radiation r 96.2 0.62 1.3E-05 43.1 18.0 20 2-30 1-20 (302)
52 PF06005 DUF904: Protein of un 96.0 0.14 3.1E-06 39.5 10.5 57 120-176 7-63 (72)
53 PHA02562 46 endonuclease subun 95.9 0.55 1.2E-05 47.7 17.6 14 34-47 283-296 (562)
54 KOG3113 Uncharacterized conser 95.6 0.0079 1.7E-07 56.6 2.5 56 1-60 112-170 (293)
55 KOG1785 Tyrosine kinase negati 95.4 0.0067 1.5E-07 60.4 1.4 47 2-49 371-419 (563)
56 KOG2932 E3 ubiquitin ligase in 95.4 0.0065 1.4E-07 58.7 1.2 42 2-45 92-133 (389)
57 PRK11637 AmiB activator; Provi 95.3 3.4 7.4E-05 41.2 21.8 42 133-174 214-255 (428)
58 PRK13729 conjugal transfer pil 95.3 0.37 8E-06 49.2 13.5 53 124-176 69-121 (475)
59 PF09738 DUF2051: Double stran 95.3 0.27 5.9E-06 47.5 12.0 72 110-181 88-162 (302)
60 PF05010 TACC: Transforming ac 95.3 0.28 6.2E-06 45.0 11.5 76 101-176 127-206 (207)
61 PRK11637 AmiB activator; Provi 95.3 0.38 8.2E-06 48.0 13.3 59 118-176 69-127 (428)
62 PF14447 Prok-RING_4: Prokaryo 95.2 0.0071 1.5E-07 44.4 0.8 36 13-50 19-54 (55)
63 KOG1734 Predicted RING-contain 95.2 0.0071 1.5E-07 57.5 0.9 62 2-68 226-298 (328)
64 KOG1962 B-cell receptor-associ 95.1 0.17 3.8E-06 46.7 9.6 61 116-176 150-210 (216)
65 KOG1039 Predicted E3 ubiquitin 95.1 0.0095 2.1E-07 58.4 1.5 45 2-46 163-221 (344)
66 PF05290 Baculo_IE-1: Baculovi 95.1 0.014 3E-07 50.1 2.2 47 2-48 82-134 (140)
67 COG5194 APC11 Component of SCF 95.0 0.02 4.3E-07 45.3 2.6 33 14-46 49-81 (88)
68 PRK10884 SH3 domain-containing 94.9 0.63 1.4E-05 42.7 12.5 64 111-174 105-168 (206)
69 PF03854 zf-P11: P-11 zinc fin 94.5 0.029 6.3E-07 40.2 2.3 44 2-47 4-47 (50)
70 PF10211 Ax_dynein_light: Axon 94.3 3.4 7.4E-05 37.2 15.7 35 115-149 125-159 (189)
71 PF04949 Transcrip_act: Transc 94.1 2 4.4E-05 37.7 13.2 63 117-179 84-146 (159)
72 KOG1941 Acetylcholine receptor 94.0 0.019 4.1E-07 57.1 0.6 45 1-45 366-415 (518)
73 PRK02224 chromosome segregatio 93.8 4.3 9.3E-05 43.8 18.1 17 34-50 450-466 (880)
74 PRK10884 SH3 domain-containing 93.5 1.7 3.8E-05 39.8 12.5 46 133-178 120-165 (206)
75 PF06120 Phage_HK97_TLTM: Tail 93.5 5.5 0.00012 38.7 16.4 45 65-111 20-67 (301)
76 PF04899 MbeD_MobD: MbeD/MobD 93.4 1.7 3.7E-05 33.4 10.4 57 108-164 12-68 (70)
77 PRK15422 septal ring assembly 93.2 1.1 2.3E-05 35.3 9.0 55 120-174 7-61 (79)
78 PF06156 DUF972: Protein of un 93.2 0.81 1.8E-05 37.9 8.9 61 115-175 13-82 (107)
79 PF10146 zf-C4H2: Zinc finger- 93.0 7.7 0.00017 36.2 19.9 45 137-181 59-103 (230)
80 KOG1962 B-cell receptor-associ 92.7 1 2.2E-05 41.8 9.7 61 122-182 149-209 (216)
81 PF12709 Kinetocho_Slk19: Cent 92.7 2.1 4.6E-05 34.3 10.3 37 131-167 49-85 (87)
82 PF14570 zf-RING_4: RING/Ubox 92.7 0.099 2.1E-06 37.5 2.4 43 3-45 1-47 (48)
83 PF05377 FlaC_arch: Flagella a 92.6 0.87 1.9E-05 33.6 7.3 46 128-173 4-49 (55)
84 PF08317 Spc7: Spc7 kinetochor 92.6 2.8 6.1E-05 40.6 13.1 22 74-95 119-140 (325)
85 KOG4001 Axonemal dynein light 92.5 4 8.6E-05 37.8 13.1 92 82-178 160-254 (259)
86 PF04111 APG6: Autophagy prote 92.4 2.7 5.9E-05 40.7 12.7 64 113-176 60-123 (314)
87 KOG0298 DEAD box-containing he 92.4 0.037 8E-07 61.8 -0.1 46 1-46 1154-1199(1394)
88 PF06005 DUF904: Protein of un 92.4 4.1 9E-05 31.4 11.2 30 122-151 23-52 (72)
89 PF12325 TMF_TATA_bd: TATA ele 92.0 3.3 7.2E-05 34.9 11.3 49 127-175 64-112 (120)
90 PF10498 IFT57: Intra-flagella 92.0 6.2 0.00013 39.1 14.9 44 133-176 268-318 (359)
91 TIGR02894 DNA_bind_RsfA transc 91.9 1.9 4.1E-05 38.3 10.0 55 129-183 102-156 (161)
92 KOG0946 ER-Golgi vesicle-tethe 91.9 1.3 2.7E-05 48.1 10.5 50 133-182 673-722 (970)
93 TIGR01069 mutS2 MutS2 family p 91.9 6.2 0.00013 42.8 15.9 17 59-75 484-500 (771)
94 smart00744 RINGv The RING-vari 91.7 0.19 4.2E-06 35.7 3.0 41 2-42 1-49 (49)
95 COG3883 Uncharacterized protei 91.6 1.8 3.9E-05 41.3 10.2 38 118-155 53-90 (265)
96 KOG4367 Predicted Zn-finger pr 91.5 0.095 2.1E-06 53.0 1.7 31 1-32 5-35 (699)
97 PF07888 CALCOCO1: Calcium bin 91.4 3.8 8.3E-05 42.8 13.2 51 125-175 186-236 (546)
98 PF12718 Tropomyosin_1: Tropom 91.4 3.2 6.8E-05 35.9 10.7 41 118-158 29-69 (143)
99 PRK10780 periplasmic chaperone 91.3 5.8 0.00013 34.6 12.6 50 82-131 26-75 (165)
100 KOG3161 Predicted E3 ubiquitin 91.3 0.086 1.9E-06 55.4 1.2 40 1-43 12-54 (861)
101 COG2433 Uncharacterized conser 91.3 7.9 0.00017 41.0 15.2 34 139-172 475-508 (652)
102 PF00038 Filament: Intermediat 91.1 6.2 0.00013 37.3 13.5 66 111-176 48-113 (312)
103 PF10168 Nup88: Nuclear pore c 91.1 5.7 0.00012 42.8 14.5 16 70-85 533-548 (717)
104 KOG0250 DNA repair protein RAD 91.0 8.8 0.00019 42.9 16.0 84 113-196 390-479 (1074)
105 smart00787 Spc7 Spc7 kinetocho 91.0 15 0.00033 35.7 16.2 29 145-173 232-260 (312)
106 PF12777 MT: Microtubule-bindi 90.9 1 2.2E-05 43.9 8.1 62 117-178 221-282 (344)
107 COG5175 MOT2 Transcriptional r 90.9 0.1 2.2E-06 51.3 1.1 56 2-57 16-75 (480)
108 PF08614 ATG16: Autophagy prot 90.7 1.5 3.2E-05 39.3 8.5 55 122-176 107-161 (194)
109 smart00787 Spc7 Spc7 kinetocho 90.7 6.6 0.00014 38.2 13.4 38 137-174 217-254 (312)
110 PRK00409 recombination and DNA 90.6 8.1 0.00018 42.0 15.3 26 58-87 488-513 (782)
111 PRK12775 putative trifunctiona 90.6 8.7 0.00019 42.9 15.9 45 2-46 798-849 (1006)
112 COG3074 Uncharacterized protei 90.6 3.6 7.7E-05 31.9 9.0 18 134-151 21-38 (79)
113 PF10211 Ax_dynein_light: Axon 90.5 13 0.00028 33.5 14.6 52 128-179 124-183 (189)
114 COG5236 Uncharacterized conser 90.4 0.17 3.6E-06 50.0 2.2 44 1-45 62-107 (493)
115 PF04156 IncA: IncA protein; 90.1 4.2 9E-05 35.8 10.7 44 133-176 139-182 (191)
116 PF11559 ADIP: Afadin- and alp 90.0 11 0.00024 32.1 16.4 64 113-176 69-132 (151)
117 PF11559 ADIP: Afadin- and alp 89.9 11 0.00023 32.2 12.8 6 168-173 142-147 (151)
118 COG2433 Uncharacterized conser 89.8 3.3 7.2E-05 43.6 11.1 61 115-175 427-490 (652)
119 COG4026 Uncharacterized protei 89.8 3.2 6.9E-05 39.0 9.9 27 150-176 168-194 (290)
120 TIGR02680 conserved hypothetic 89.8 16 0.00034 42.2 17.4 29 64-92 212-240 (1353)
121 PRK13169 DNA replication intia 89.7 2.8 6.1E-05 34.9 8.6 41 116-156 14-54 (110)
122 PF08317 Spc7: Spc7 kinetochor 89.6 17 0.00037 35.2 15.3 30 142-171 234-263 (325)
123 COG3883 Uncharacterized protei 89.6 5.7 0.00012 37.9 11.6 63 121-183 49-112 (265)
124 PF14197 Cep57_CLD_2: Centroso 89.6 7.8 0.00017 29.6 10.4 55 123-177 11-65 (69)
125 PF02183 HALZ: Homeobox associ 89.5 0.99 2.1E-05 31.8 4.9 32 124-155 12-43 (45)
126 PF11793 FANCL_C: FANCL C-term 89.4 0.13 2.9E-06 39.1 0.5 46 1-46 3-66 (70)
127 PF15290 Syntaphilin: Golgi-lo 89.4 6.6 0.00014 37.9 11.9 13 156-168 153-165 (305)
128 PF07798 DUF1640: Protein of u 89.3 15 0.00032 32.5 14.0 16 66-81 13-31 (177)
129 PF05529 Bap31: B-cell recepto 89.3 4.3 9.3E-05 36.1 10.2 8 167-174 176-183 (192)
130 PF07889 DUF1664: Protein of u 89.3 13 0.00028 31.7 14.5 58 121-178 65-122 (126)
131 PHA03096 p28-like protein; Pro 89.2 0.21 4.6E-06 47.9 1.8 42 2-43 180-231 (284)
132 PF04111 APG6: Autophagy prote 88.9 8.5 0.00018 37.3 12.7 69 115-183 69-137 (314)
133 PF10481 CENP-F_N: Cenp-F N-te 88.8 16 0.00035 35.2 14.0 72 124-195 60-147 (307)
134 PF04728 LPP: Lipoprotein leuc 88.8 5.1 0.00011 29.7 8.4 49 117-168 3-51 (56)
135 PHA02562 46 endonuclease subun 88.8 25 0.00055 35.7 16.6 51 126-176 222-272 (562)
136 KOG0980 Actin-binding protein 88.7 12 0.00026 41.2 14.4 40 137-176 458-504 (980)
137 KOG0250 DNA repair protein RAD 88.6 15 0.00032 41.3 15.3 47 132-178 338-384 (1074)
138 KOG1850 Myosin-like coiled-coi 88.5 12 0.00027 36.8 13.2 94 146-248 286-388 (391)
139 PRK04325 hypothetical protein; 88.5 7.1 0.00015 30.1 9.5 34 144-177 22-55 (74)
140 KOG4196 bZIP transcription fac 88.4 10 0.00022 32.6 11.2 13 63-75 38-50 (135)
141 KOG0243 Kinesin-like protein [ 88.2 7.9 0.00017 43.2 13.0 34 141-174 479-512 (1041)
142 KOG3002 Zn finger protein [Gen 88.1 0.37 8.1E-06 46.6 2.7 42 1-47 49-92 (299)
143 PF03938 OmpH: Outer membrane 88.0 12 0.00026 31.7 11.7 6 84-89 21-26 (158)
144 PRK13729 conjugal transfer pil 87.7 2.2 4.8E-05 43.7 8.0 57 118-174 70-126 (475)
145 KOG4362 Transcriptional regula 87.5 0.16 3.6E-06 53.7 -0.1 46 1-47 22-70 (684)
146 PF13870 DUF4201: Domain of un 87.4 14 0.00031 32.3 12.2 67 112-178 51-124 (177)
147 KOG3859 Septins (P-loop GTPase 87.4 17 0.00037 35.7 13.3 68 101-174 332-399 (406)
148 KOG1853 LIS1-interacting prote 87.4 22 0.00048 34.1 13.8 9 244-252 237-245 (333)
149 TIGR01069 mutS2 MutS2 family p 87.4 11 0.00024 40.9 13.6 12 278-289 735-746 (771)
150 PF09304 Cortex-I_coil: Cortex 87.3 16 0.00034 30.5 11.4 56 121-176 34-89 (107)
151 COG0419 SbcC ATPase involved i 87.3 21 0.00045 39.2 15.8 14 35-48 457-470 (908)
152 PF05667 DUF812: Protein of un 87.2 8.7 0.00019 40.6 12.3 34 145-178 447-480 (594)
153 PF08172 CASP_C: CASP C termin 87.2 2.1 4.5E-05 40.3 7.0 38 115-152 91-128 (248)
154 PF10498 IFT57: Intra-flagella 87.0 15 0.00032 36.5 13.2 63 112-174 240-302 (359)
155 PF07888 CALCOCO1: Calcium bin 87.0 18 0.00039 37.9 14.3 32 133-164 215-246 (546)
156 PF10168 Nup88: Nuclear pore c 87.0 23 0.00049 38.3 15.5 16 161-176 648-663 (717)
157 TIGR03007 pepcterm_ChnLen poly 86.9 12 0.00026 37.7 12.9 31 151-181 354-384 (498)
158 PF02891 zf-MIZ: MIZ/SP-RING z 86.9 0.3 6.4E-06 34.9 1.0 43 1-44 3-50 (50)
159 PF09728 Taxilin: Myosin-like 86.9 31 0.00068 33.4 15.9 76 103-178 220-298 (309)
160 PF03148 Tektin: Tektin family 86.9 35 0.00075 33.9 17.2 52 107-158 241-292 (384)
161 PRK02119 hypothetical protein; 86.8 9.1 0.0002 29.5 9.3 26 149-174 27-52 (73)
162 PF10205 KLRAQ: Predicted coil 86.8 7.8 0.00017 32.0 9.3 53 124-176 5-57 (102)
163 KOG0994 Extracellular matrix g 86.8 8.2 0.00018 43.8 12.0 44 135-178 1264-1312(1758)
164 PRK09039 hypothetical protein; 86.7 9.6 0.00021 37.4 11.6 56 123-178 129-184 (343)
165 TIGR03752 conj_TIGR03752 integ 86.5 5.8 0.00013 40.7 10.2 20 158-177 122-141 (472)
166 PF06810 Phage_GP20: Phage min 86.5 6.2 0.00013 34.5 9.2 17 139-155 52-68 (155)
167 COG4372 Uncharacterized protei 86.4 35 0.00075 34.6 15.2 34 133-166 132-165 (499)
168 PF08614 ATG16: Autophagy prot 86.4 10 0.00023 33.9 10.9 42 133-174 139-180 (194)
169 PF10805 DUF2730: Protein of u 86.4 7 0.00015 32.0 8.9 52 124-175 42-95 (106)
170 PF04102 SlyX: SlyX; InterPro 86.3 4.6 0.0001 30.5 7.3 36 144-179 17-52 (69)
171 PF10186 Atg14: UV radiation r 86.2 22 0.00047 32.8 13.3 6 37-42 1-6 (302)
172 PF07191 zinc-ribbons_6: zinc- 86.1 0.15 3.2E-06 39.3 -1.0 41 1-47 2-42 (70)
173 PF08581 Tup_N: Tup N-terminal 86.0 15 0.00032 28.9 11.7 21 130-150 31-51 (79)
174 PF10473 CENP-F_leu_zip: Leuci 86.0 22 0.00048 30.8 12.6 59 115-173 50-108 (140)
175 PRK02793 phi X174 lysis protei 86.0 11 0.00023 29.0 9.2 33 147-179 24-56 (72)
176 PF12777 MT: Microtubule-bindi 85.8 6.6 0.00014 38.2 10.0 59 116-174 234-292 (344)
177 PF10392 COG5: Golgi transport 85.7 20 0.00044 30.1 14.6 55 120-174 68-122 (132)
178 COG1579 Zn-ribbon protein, pos 85.7 17 0.00037 34.2 12.2 58 118-175 90-147 (239)
179 TIGR01843 type_I_hlyD type I s 85.6 33 0.00072 33.1 14.8 11 279-289 404-414 (423)
180 PF05883 Baculo_RING: Baculovi 85.6 0.5 1.1E-05 40.7 1.8 31 1-31 27-65 (134)
181 PRK02224 chromosome segregatio 85.4 49 0.0011 35.8 17.3 15 70-84 147-161 (880)
182 KOG4367 Predicted Zn-finger pr 85.2 4.4 9.5E-05 41.4 8.5 148 21-176 176-329 (699)
183 KOG2264 Exostosin EXT1L [Signa 85.2 7.5 0.00016 41.1 10.3 60 122-181 91-150 (907)
184 PF12325 TMF_TATA_bd: TATA ele 85.2 21 0.00046 30.1 11.4 20 149-168 72-91 (120)
185 PF05266 DUF724: Protein of un 85.0 22 0.00049 32.1 12.3 63 118-180 118-180 (190)
186 TIGR00606 rad50 rad50. This fa 85.0 31 0.00067 39.6 16.1 16 34-49 676-691 (1311)
187 KOG3647 Predicted coiled-coil 84.9 34 0.00075 33.1 13.8 67 115-181 124-204 (338)
188 PF11932 DUF3450: Protein of u 84.8 25 0.00053 32.6 12.9 53 115-167 54-106 (251)
189 PRK11546 zraP zinc resistance 84.7 11 0.00024 32.9 9.7 38 88-125 43-80 (143)
190 PF10158 LOH1CR12: Tumour supp 84.7 18 0.00039 31.0 10.9 18 65-82 20-37 (131)
191 PRK04406 hypothetical protein; 84.6 12 0.00025 29.1 8.9 26 122-147 9-34 (75)
192 KOG2930 SCF ubiquitin ligase, 84.5 0.61 1.3E-05 38.7 1.8 29 16-44 78-106 (114)
193 PF10146 zf-C4H2: Zinc finger- 84.5 28 0.00061 32.5 13.0 46 130-175 59-104 (230)
194 PRK00409 recombination and DNA 84.5 18 0.00039 39.4 13.4 11 278-288 746-756 (782)
195 PF13942 Lipoprotein_20: YfhG 84.4 7.7 0.00017 34.9 8.8 51 120-173 115-165 (179)
196 KOG1493 Anaphase-promoting com 84.4 0.36 7.7E-06 38.0 0.4 32 15-46 47-81 (84)
197 TIGR01005 eps_transp_fam exopo 84.3 19 0.00041 38.4 13.4 58 125-182 346-406 (754)
198 PRK09841 cryptic autophosphory 84.3 31 0.00066 37.0 14.9 33 151-183 369-401 (726)
199 PF12718 Tropomyosin_1: Tropom 84.2 26 0.00057 30.1 12.3 50 127-176 76-132 (143)
200 PHA01750 hypothetical protein 83.7 12 0.00026 28.8 8.3 31 123-153 41-71 (75)
201 PF08826 DMPK_coil: DMPK coile 83.6 16 0.00035 27.3 10.0 35 142-176 22-56 (61)
202 PRK12704 phosphodiesterase; Pr 83.6 59 0.0013 33.8 17.2 16 202-217 220-235 (520)
203 PRK00846 hypothetical protein; 83.6 17 0.00036 28.5 9.4 39 144-182 26-64 (77)
204 TIGR01010 BexC_CtrB_KpsE polys 83.5 30 0.00065 33.5 13.4 18 66-83 137-154 (362)
205 PRK10920 putative uroporphyrin 83.5 21 0.00045 35.9 12.5 57 102-158 70-126 (390)
206 KOG0804 Cytoplasmic Zn-finger 83.3 40 0.00086 34.7 14.3 23 16-38 243-269 (493)
207 PF04012 PspA_IM30: PspA/IM30 83.3 34 0.00074 30.8 16.8 14 68-81 21-34 (221)
208 PF07544 Med9: RNA polymerase 83.3 6.7 0.00014 30.7 7.2 54 121-174 25-81 (83)
209 KOG1029 Endocytic adaptor prot 83.3 21 0.00046 39.1 12.9 21 134-154 482-502 (1118)
210 TIGR02168 SMC_prok_B chromosom 83.2 49 0.0011 36.2 16.3 15 68-82 151-165 (1179)
211 PF10571 UPF0547: Uncharacteri 83.2 0.52 1.1E-05 29.5 0.7 10 2-11 2-11 (26)
212 PF09738 DUF2051: Double stran 83.2 11 0.00025 36.5 10.2 66 111-176 99-164 (302)
213 COG2900 SlyX Uncharacterized p 83.2 17 0.00036 28.3 9.1 51 133-183 10-60 (72)
214 TIGR03185 DNA_S_dndD DNA sulfu 83.1 33 0.00071 36.3 14.4 35 118-152 429-463 (650)
215 PF15254 CCDC14: Coiled-coil d 83.0 11 0.00024 40.9 10.7 56 114-169 438-493 (861)
216 KOG2114 Vacuolar assembly/sort 82.9 0.73 1.6E-05 50.0 2.1 40 2-44 842-881 (933)
217 PF00038 Filament: Intermediat 82.8 43 0.00093 31.5 14.7 32 123-154 222-253 (312)
218 COG1579 Zn-ribbon protein, pos 82.8 20 0.00044 33.7 11.4 69 112-180 40-110 (239)
219 KOG4466 Component of histone d 82.7 20 0.00043 34.6 11.3 18 201-218 182-199 (291)
220 KOG4196 bZIP transcription fac 82.7 31 0.00067 29.8 11.5 23 161-183 97-119 (135)
221 PF13240 zinc_ribbon_2: zinc-r 82.6 0.23 5.1E-06 30.1 -1.0 22 24-45 2-23 (23)
222 KOG2129 Uncharacterized conser 82.6 41 0.00088 34.5 13.9 30 134-163 256-285 (552)
223 PF05266 DUF724: Protein of un 82.5 38 0.00082 30.7 14.5 100 66-178 83-185 (190)
224 KOG4848 Extracellular matrix-a 82.5 33 0.00072 31.6 12.1 61 66-129 83-144 (225)
225 KOG4657 Uncharacterized conser 82.5 44 0.00096 31.5 13.8 44 118-161 80-123 (246)
226 TIGR03017 EpsF chain length de 82.4 54 0.0012 32.4 15.0 40 135-174 258-297 (444)
227 PRK11519 tyrosine kinase; Prov 82.4 45 0.00098 35.7 15.3 31 152-182 370-400 (719)
228 PF11932 DUF3450: Protein of u 82.2 42 0.00091 31.1 14.8 14 207-220 185-198 (251)
229 PRK00888 ftsB cell division pr 82.1 5.3 0.00012 32.7 6.5 22 130-151 40-61 (105)
230 PRK01156 chromosome segregatio 81.9 63 0.0014 35.2 16.4 18 71-88 148-165 (895)
231 KOG0980 Actin-binding protein 81.8 64 0.0014 35.8 15.9 41 134-174 413-453 (980)
232 COG4026 Uncharacterized protei 81.7 12 0.00026 35.3 9.3 13 100-112 136-148 (290)
233 KOG0995 Centromere-associated 81.7 21 0.00045 37.6 11.9 22 132-153 302-323 (581)
234 PF09726 Macoilin: Transmembra 81.6 79 0.0017 34.2 16.7 83 121-206 591-683 (697)
235 PF03962 Mnd1: Mnd1 family; I 81.6 36 0.00077 30.6 12.2 18 75-92 47-64 (188)
236 PF04977 DivIC: Septum formati 81.5 8.9 0.00019 28.6 7.1 22 129-150 29-50 (80)
237 KOG4571 Activating transcripti 81.3 13 0.00028 36.0 9.6 40 132-171 249-288 (294)
238 PF10174 Cast: RIM-binding pro 81.2 40 0.00087 36.9 14.4 61 114-174 347-407 (775)
239 KOG1850 Myosin-like coiled-coi 81.1 43 0.00093 33.2 13.1 34 138-171 130-163 (391)
240 PF02183 HALZ: Homeobox associ 81.1 6.9 0.00015 27.5 5.8 34 122-155 3-36 (45)
241 PF10212 TTKRSYEDQ: Predicted 81.0 24 0.00053 36.7 12.1 65 112-176 415-486 (518)
242 KOG0709 CREB/ATF family transc 81.0 30 0.00064 35.6 12.5 45 123-167 271-315 (472)
243 PRK09039 hypothetical protein; 81.0 33 0.00071 33.7 12.6 55 118-172 131-185 (343)
244 COG0497 RecN ATPase involved i 80.9 34 0.00074 36.0 13.3 112 113-226 314-430 (557)
245 PF00261 Tropomyosin: Tropomyo 80.5 40 0.00086 31.1 12.4 36 139-174 177-212 (237)
246 PF06632 XRCC4: DNA double-str 80.5 49 0.0011 32.7 13.6 28 151-178 186-213 (342)
247 PRK03918 chromosome segregatio 80.4 51 0.0011 35.6 15.0 14 35-48 435-448 (880)
248 PF12240 Angiomotin_C: Angiomo 80.3 21 0.00046 32.9 10.2 41 147-187 59-102 (205)
249 KOG4460 Nuclear pore complex, 80.2 49 0.0011 35.0 13.9 47 66-116 552-598 (741)
250 cd07656 F-BAR_srGAP The F-BAR 80.2 48 0.001 31.0 12.9 52 125-176 132-193 (241)
251 PF07106 TBPIP: Tat binding pr 80.1 14 0.0003 32.2 8.8 40 135-174 113-160 (169)
252 KOG2264 Exostosin EXT1L [Signa 80.1 14 0.0003 39.1 10.0 42 118-159 101-142 (907)
253 KOG0289 mRNA splicing factor [ 80.1 15 0.00032 37.7 9.9 54 1-54 1-54 (506)
254 COG1196 Smc Chromosome segrega 80.1 83 0.0018 35.7 17.0 27 131-157 260-286 (1163)
255 KOG1842 FYVE finger-containing 80.0 13 0.00028 38.1 9.5 26 139-164 313-338 (505)
256 PF08581 Tup_N: Tup N-terminal 79.9 27 0.00059 27.4 10.7 39 113-158 28-66 (79)
257 TIGR02894 DNA_bind_RsfA transc 79.9 16 0.00035 32.5 9.0 33 137-169 117-149 (161)
258 PRK04778 septation ring format 79.7 34 0.00074 35.7 13.0 7 66-72 272-278 (569)
259 PF14569 zf-UDP: Zinc-binding 79.7 1.8 3.9E-05 34.1 2.8 46 2-47 11-63 (80)
260 PF04899 MbeD_MobD: MbeD/MobD 79.6 26 0.00056 27.0 9.0 44 135-178 18-61 (70)
261 KOG1118 Lysophosphatidic acid 79.6 59 0.0013 32.1 13.5 63 164-247 228-294 (366)
262 PF03961 DUF342: Protein of un 79.5 16 0.00036 36.7 10.3 34 145-178 375-408 (451)
263 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.5 36 0.00079 28.6 11.0 67 113-179 6-72 (132)
264 PRK06975 bifunctional uroporph 79.5 21 0.00045 38.1 11.4 44 116-159 370-413 (656)
265 PF09728 Taxilin: Myosin-like 78.8 47 0.001 32.2 12.8 58 120-177 233-290 (309)
266 smart00338 BRLZ basic region l 78.7 15 0.00032 27.0 7.4 15 136-150 31-45 (65)
267 PF12709 Kinetocho_Slk19: Cent 78.7 16 0.00034 29.4 7.8 41 113-153 45-85 (87)
268 PF13874 Nup54: Nucleoporin co 78.4 21 0.00046 30.4 9.3 28 149-176 69-96 (141)
269 KOG1812 Predicted E3 ubiquitin 78.4 1 2.2E-05 44.8 1.3 45 2-46 148-203 (384)
270 COG4942 Membrane-bound metallo 78.3 24 0.00051 35.9 10.8 91 101-195 40-132 (420)
271 PRK14127 cell division protein 78.3 11 0.00025 31.3 7.3 26 129-154 42-67 (109)
272 TIGR03017 EpsF chain length de 78.2 62 0.0013 32.0 13.8 29 153-181 343-371 (444)
273 PF11221 Med21: Subunit 21 of 78.0 26 0.00056 30.1 9.7 36 133-171 106-141 (144)
274 KOG3039 Uncharacterized conser 77.9 1.2 2.6E-05 42.2 1.6 28 3-31 46-73 (303)
275 cd00632 Prefoldin_beta Prefold 77.7 10 0.00022 30.6 6.8 43 123-165 62-104 (105)
276 TIGR03752 conj_TIGR03752 integ 77.6 19 0.0004 37.2 9.9 20 160-179 117-136 (472)
277 PF05377 FlaC_arch: Flagella a 77.3 16 0.00034 27.0 6.9 46 115-160 5-50 (55)
278 KOG4360 Uncharacterized coiled 77.3 44 0.00095 35.0 12.4 38 133-170 263-300 (596)
279 PF06657 Cep57_MT_bd: Centroso 77.2 28 0.00061 27.2 8.8 27 138-164 50-76 (79)
280 PRK09841 cryptic autophosphory 77.1 54 0.0012 35.2 13.9 41 137-177 345-388 (726)
281 COG1340 Uncharacterized archae 77.0 75 0.0016 30.9 17.0 59 118-176 180-238 (294)
282 PF04375 HemX: HemX; InterPro 77.0 54 0.0012 32.4 12.9 76 79-156 42-118 (372)
283 PRK06975 bifunctional uroporph 76.9 38 0.00083 36.1 12.5 33 139-171 379-411 (656)
284 COG3813 Uncharacterized protei 76.9 2.6 5.7E-05 32.9 2.9 48 3-52 8-58 (84)
285 PF13248 zf-ribbon_3: zinc-rib 76.7 0.5 1.1E-05 29.2 -0.9 23 23-45 4-26 (26)
286 KOG4445 Uncharacterized conser 76.5 1.1 2.4E-05 43.6 0.9 48 1-48 116-188 (368)
287 PF15616 TerY-C: TerY-C metal 76.4 1.3 2.8E-05 38.0 1.2 38 3-47 80-117 (131)
288 COG1340 Uncharacterized archae 76.3 79 0.0017 30.8 15.3 55 119-173 188-242 (294)
289 PF04849 HAP1_N: HAP1 N-termin 76.3 45 0.00097 32.6 11.7 44 129-172 260-303 (306)
290 PF10046 BLOC1_2: Biogenesis o 76.3 37 0.00079 27.3 9.6 51 121-171 32-85 (99)
291 PF06637 PV-1: PV-1 protein (P 76.3 89 0.0019 31.7 13.9 32 138-169 349-380 (442)
292 PF07798 DUF1640: Protein of u 76.3 54 0.0012 28.9 17.1 34 146-179 117-151 (177)
293 PF05546 She9_MDM33: She9 / Md 76.2 47 0.001 30.7 11.2 42 124-165 32-73 (207)
294 KOG0995 Centromere-associated 76.0 20 0.00043 37.7 9.8 44 133-176 282-325 (581)
295 TIGR02449 conserved hypothetic 75.9 32 0.0007 26.1 8.6 10 163-172 50-59 (65)
296 PF06657 Cep57_MT_bd: Centroso 75.9 26 0.00057 27.3 8.3 48 131-178 17-73 (79)
297 PF06103 DUF948: Bacterial pro 75.9 35 0.00076 26.5 10.6 54 115-168 24-77 (90)
298 KOG1428 Inhibitor of type V ad 75.8 1.6 3.5E-05 50.3 1.9 45 2-46 3488-3544(3738)
299 PF04645 DUF603: Protein of un 75.8 20 0.00044 32.3 8.5 56 103-158 98-158 (181)
300 PRK13922 rod shape-determining 75.7 68 0.0015 29.9 12.7 20 134-153 72-91 (276)
301 PF10234 Cluap1: Clusterin-ass 75.6 78 0.0017 30.4 14.5 58 114-171 194-258 (267)
302 PF14362 DUF4407: Domain of un 75.6 74 0.0016 30.1 14.5 13 80-92 99-111 (301)
303 KOG4515 Uncharacterized conser 75.6 58 0.0013 29.9 11.5 67 107-173 96-162 (217)
304 PF14966 DNA_repr_REX1B: DNA r 75.5 38 0.00082 27.4 9.4 60 113-172 36-97 (97)
305 KOG0243 Kinesin-like protein [ 75.5 1.1E+02 0.0023 34.7 15.6 61 121-181 480-540 (1041)
306 PF06906 DUF1272: Protein of u 75.4 4.4 9.5E-05 30.1 3.6 45 3-49 8-55 (57)
307 PF15619 Lebercilin: Ciliary p 75.4 20 0.00043 32.6 8.6 61 101-161 134-194 (194)
308 PRK01203 prefoldin subunit alp 75.2 52 0.0011 28.3 10.6 38 135-172 84-121 (130)
309 cd07647 F-BAR_PSTPIP The F-BAR 75.1 69 0.0015 29.5 13.3 27 142-168 117-143 (239)
310 PF09726 Macoilin: Transmembra 75.0 28 0.0006 37.6 10.9 60 113-172 456-515 (697)
311 KOG2685 Cystoskeletal protein 74.9 1E+02 0.0022 31.4 14.3 40 137-176 350-389 (421)
312 PRK10803 tol-pal system protei 74.9 19 0.00041 33.9 8.7 45 127-174 57-101 (263)
313 PF14523 Syntaxin_2: Syntaxin- 74.9 38 0.00083 26.5 10.9 32 142-173 68-99 (102)
314 PF12329 TMF_DNA_bd: TATA elem 74.8 36 0.00078 26.1 9.6 25 122-146 31-55 (74)
315 KOG0994 Extracellular matrix g 74.8 44 0.00095 38.4 12.3 46 135-180 1700-1745(1758)
316 PF09730 BicD: Microtubule-ass 74.7 38 0.00083 36.7 11.8 36 112-147 29-64 (717)
317 KOG0996 Structural maintenance 74.6 68 0.0015 36.7 13.8 55 127-181 408-462 (1293)
318 smart00064 FYVE Protein presen 74.5 0.71 1.5E-05 34.1 -0.8 31 2-32 12-45 (68)
319 PF03962 Mnd1: Mnd1 family; I 74.4 28 0.0006 31.4 9.3 17 166-182 135-151 (188)
320 PF09744 Jnk-SapK_ap_N: JNK_SA 74.4 61 0.0013 28.6 14.4 14 61-74 19-32 (158)
321 KOG0964 Structural maintenance 74.3 71 0.0015 36.0 13.7 63 116-178 691-753 (1200)
322 PF14735 HAUS4: HAUS augmin-li 74.2 78 0.0017 29.7 13.7 47 65-116 15-61 (238)
323 cd00065 FYVE FYVE domain; Zinc 74.1 1.7 3.7E-05 30.8 1.2 31 2-32 4-37 (57)
324 PF05546 She9_MDM33: She9 / Md 74.1 22 0.00048 32.8 8.6 60 115-174 7-68 (207)
325 PF05791 Bacillus_HBL: Bacillu 73.7 66 0.0014 28.6 13.3 37 136-172 140-176 (184)
326 PRK04863 mukB cell division pr 73.6 1.8E+02 0.0038 34.4 17.4 14 70-83 277-290 (1486)
327 PF03978 Borrelia_REV: Borreli 73.5 28 0.00061 30.9 8.7 16 142-157 70-85 (160)
328 KOG3119 Basic region leucine z 73.4 25 0.00055 33.3 9.2 29 127-155 218-246 (269)
329 smart00338 BRLZ basic region l 73.4 13 0.00028 27.3 5.8 21 132-152 41-61 (65)
330 TIGR02338 gimC_beta prefoldin, 73.3 13 0.00028 30.3 6.4 42 122-163 65-106 (110)
331 PF06548 Kinesin-related: Kine 73.2 63 0.0014 33.3 12.2 61 118-178 296-363 (488)
332 KOG0977 Nuclear envelope prote 73.2 34 0.00073 36.0 10.6 24 134-157 109-132 (546)
333 PF05529 Bap31: B-cell recepto 73.0 34 0.00073 30.3 9.4 12 135-146 172-183 (192)
334 TIGR03319 YmdA_YtgF conserved 73.0 1.2E+02 0.0027 31.5 17.4 15 203-217 215-229 (514)
335 TIGR02977 phageshock_pspA phag 73.0 75 0.0016 28.9 16.9 7 70-76 24-30 (219)
336 KOG0709 CREB/ATF family transc 72.9 13 0.00028 38.2 7.3 42 133-174 274-315 (472)
337 COG1730 GIM5 Predicted prefold 72.9 24 0.00052 30.8 8.2 41 113-153 97-137 (145)
338 PF10481 CENP-F_N: Cenp-F N-te 72.9 20 0.00044 34.6 8.3 73 88-168 18-90 (307)
339 KOG2391 Vacuolar sorting prote 72.9 45 0.00098 33.1 10.8 45 133-177 234-278 (365)
340 PF00412 LIM: LIM domain; Int 72.7 4 8.6E-05 28.6 2.8 39 3-49 1-40 (58)
341 KOG2751 Beclin-like protein [S 72.6 64 0.0014 33.0 12.1 42 135-176 194-235 (447)
342 KOG1812 Predicted E3 ubiquitin 72.5 2 4.3E-05 42.8 1.6 44 2-45 308-355 (384)
343 PF14712 Snapin_Pallidin: Snap 72.5 43 0.00093 26.0 10.5 30 150-179 62-91 (92)
344 COG2959 HemX Uncharacterized e 72.4 61 0.0013 32.6 11.7 42 117-158 83-124 (391)
345 PF06156 DUF972: Protein of un 72.3 34 0.00073 28.3 8.6 33 118-150 9-41 (107)
346 PF07058 Myosin_HC-like: Myosi 72.2 1E+02 0.0023 30.3 20.6 34 91-124 16-49 (351)
347 COG4717 Uncharacterized conser 72.2 19 0.0004 39.8 8.7 79 113-191 784-868 (984)
348 TIGR03185 DNA_S_dndD DNA sulfu 72.1 68 0.0015 33.9 12.9 39 116-154 434-472 (650)
349 KOG2629 Peroxisomal membrane a 72.1 1E+02 0.0022 30.1 13.0 101 74-179 88-188 (300)
350 PF15358 TSKS: Testis-specific 72.0 61 0.0013 33.2 11.7 51 135-188 192-244 (558)
351 PF10473 CENP-F_leu_zip: Leuci 71.9 66 0.0014 27.9 12.6 60 115-174 22-81 (140)
352 KOG1899 LAR transmembrane tyro 71.9 1.4E+02 0.0029 32.4 14.6 44 141-185 277-320 (861)
353 PF06810 Phage_GP20: Phage min 71.8 63 0.0014 28.2 10.6 51 118-168 21-74 (155)
354 PF10234 Cluap1: Clusterin-ass 71.8 60 0.0013 31.1 11.2 24 128-151 194-217 (267)
355 KOG2077 JNK/SAPK-associated pr 71.8 26 0.00057 37.1 9.4 78 109-187 349-437 (832)
356 KOG2991 Splicing regulator [RN 71.6 29 0.00063 33.4 9.0 54 135-188 119-176 (330)
357 PF00509 Hemagglutinin: Haemag 71.6 1.9 4.2E-05 44.8 1.3 20 162-184 441-460 (550)
358 PF12773 DZR: Double zinc ribb 71.5 3.2 6.9E-05 28.8 2.0 38 3-47 1-41 (50)
359 PF07106 TBPIP: Tat binding pr 71.3 31 0.00066 30.0 8.6 53 119-171 81-135 (169)
360 PRK00106 hypothetical protein; 71.2 1.4E+02 0.0031 31.4 15.1 16 202-217 235-250 (535)
361 KOG3970 Predicted E3 ubiquitin 71.1 3.2 7E-05 39.0 2.5 43 3-45 53-104 (299)
362 PF09304 Cortex-I_coil: Cortex 71.0 60 0.0013 27.1 11.0 58 113-170 33-90 (107)
363 PRK10803 tol-pal system protei 70.6 44 0.00095 31.5 10.1 45 133-177 56-100 (263)
364 PF07200 Mod_r: Modifier of ru 70.4 45 0.00098 28.2 9.3 60 119-178 29-88 (150)
365 KOG0979 Structural maintenance 70.3 1.4E+02 0.0029 33.9 14.7 58 115-172 274-331 (1072)
366 PRK09343 prefoldin subunit bet 70.2 63 0.0014 27.0 12.3 42 123-164 70-111 (121)
367 PF12128 DUF3584: Protein of u 70.1 35 0.00076 38.8 10.9 17 160-176 686-702 (1201)
368 cd00632 Prefoldin_beta Prefold 70.0 56 0.0012 26.2 12.4 31 144-174 69-99 (105)
369 PF10805 DUF2730: Protein of u 69.8 42 0.00091 27.4 8.6 44 116-159 48-93 (106)
370 PF13870 DUF4201: Domain of un 69.8 76 0.0017 27.7 13.3 55 126-180 79-133 (177)
371 PRK15422 septal ring assembly 69.7 54 0.0012 26.0 10.7 46 127-172 28-73 (79)
372 COG5185 HEC1 Protein involved 69.6 1.4E+02 0.0031 31.2 13.8 58 124-181 330-397 (622)
373 PF15290 Syntaphilin: Golgi-lo 69.6 57 0.0012 31.7 10.5 57 118-174 83-139 (305)
374 TIGR03545 conserved hypothetic 69.5 91 0.002 32.8 13.0 6 70-75 150-155 (555)
375 KOG1815 Predicted E3 ubiquitin 69.4 3.6 7.8E-05 41.5 2.7 32 2-33 72-103 (444)
376 KOG4643 Uncharacterized coiled 69.3 48 0.001 37.4 11.1 53 126-178 396-448 (1195)
377 PF07851 TMPIT: TMPIT-like pro 69.1 83 0.0018 31.1 11.8 16 113-128 21-36 (330)
378 COG5374 Uncharacterized conser 69.1 92 0.002 28.4 11.4 42 118-159 137-178 (192)
379 PF06936 Selenoprotein_S: Sele 69.0 47 0.001 30.2 9.5 32 205-238 157-190 (190)
380 PF15070 GOLGA2L5: Putative go 68.8 79 0.0017 33.7 12.4 34 135-168 199-232 (617)
381 PRK14559 putative protein seri 68.6 1.6 3.5E-05 46.4 -0.0 47 1-47 2-53 (645)
382 PF04420 CHD5: CHD5-like prote 68.5 16 0.00035 31.9 6.3 22 154-175 68-89 (161)
383 PF06785 UPF0242: Uncharacteri 68.5 99 0.0021 30.9 12.0 82 91-176 95-180 (401)
384 KOG4643 Uncharacterized coiled 68.4 1.5E+02 0.0032 33.7 14.5 49 115-163 479-527 (1195)
385 PRK11519 tyrosine kinase; Prov 68.3 89 0.0019 33.5 12.9 14 77-90 264-277 (719)
386 PF00261 Tropomyosin: Tropomyo 68.3 99 0.0021 28.5 15.5 58 113-177 172-229 (237)
387 PRK10636 putative ABC transpor 68.2 48 0.001 35.0 10.8 32 147-178 600-631 (638)
388 PF03938 OmpH: Outer membrane 68.2 53 0.0011 27.7 9.3 6 70-75 23-28 (158)
389 PRK04778 septation ring format 68.1 1.6E+02 0.0034 30.8 15.4 47 128-174 387-433 (569)
390 KOG4571 Activating transcripti 68.1 53 0.0012 31.9 10.0 39 120-158 251-289 (294)
391 PF04102 SlyX: SlyX; InterPro 68.0 30 0.00066 26.1 6.9 34 117-150 18-51 (69)
392 PF07975 C1_4: TFIIH C1-like d 67.9 5.1 0.00011 29.1 2.5 40 3-42 2-50 (51)
393 PF11544 Spc42p: Spindle pole 67.9 16 0.00035 28.6 5.4 15 132-146 13-27 (76)
394 KOG2034 Vacuolar sorting prote 67.9 2.7 6E-05 45.9 1.5 31 2-32 819-850 (911)
395 PLN03137 ATP-dependent DNA hel 67.8 63 0.0014 37.1 11.9 46 209-254 374-421 (1195)
396 PF04216 FdhE: Protein involve 67.6 1.5 3.3E-05 41.5 -0.4 43 2-45 174-221 (290)
397 KOG0612 Rho-associated, coiled 67.6 74 0.0016 36.5 12.3 32 145-176 494-525 (1317)
398 COG5185 HEC1 Protein involved 67.4 55 0.0012 34.0 10.5 20 112-131 259-278 (622)
399 KOG0946 ER-Golgi vesicle-tethe 67.4 72 0.0016 35.3 11.7 59 122-180 655-713 (970)
400 TIGR02209 ftsL_broad cell divi 67.3 37 0.0008 25.8 7.4 22 129-150 36-57 (85)
401 KOG1899 LAR transmembrane tyro 67.3 1.9E+02 0.0041 31.3 15.1 17 124-140 181-197 (861)
402 PF05667 DUF812: Protein of un 67.3 80 0.0017 33.5 12.1 36 136-171 445-480 (594)
403 PF04977 DivIC: Septum formati 67.2 25 0.00054 26.1 6.3 17 134-150 27-43 (80)
404 TIGR03007 pepcterm_ChnLen poly 67.2 86 0.0019 31.6 12.0 18 66-83 128-145 (498)
405 PF12329 TMF_DNA_bd: TATA elem 67.1 55 0.0012 25.1 10.7 47 128-174 23-69 (74)
406 cd07686 F-BAR_Fer The F-BAR (F 67.1 70 0.0015 30.0 10.5 67 102-168 104-181 (234)
407 PF02388 FemAB: FemAB family; 67.0 36 0.00078 33.9 9.2 46 134-179 245-293 (406)
408 PF05483 SCP-1: Synaptonemal c 66.8 2E+02 0.0043 31.4 15.3 66 74-143 194-259 (786)
409 KOG0996 Structural maintenance 66.5 50 0.0011 37.7 10.7 35 142-176 967-1001(1293)
410 PF05816 TelA: Toxic anion res 66.4 1E+02 0.0023 29.9 12.0 29 137-165 108-136 (333)
411 PF12660 zf-TFIIIC: Putative z 66.4 0.54 1.2E-05 38.2 -3.2 45 2-47 16-67 (99)
412 PF09730 BicD: Microtubule-ass 66.4 1.9E+02 0.0041 31.6 14.8 37 102-138 376-412 (717)
413 PRK06266 transcription initiat 66.2 4.2 9.1E-05 36.3 2.2 15 33-47 134-148 (178)
414 KOG4603 TBP-1 interacting prot 66.2 63 0.0014 29.3 9.5 14 66-79 37-50 (201)
415 PRK04863 mukB cell division pr 66.2 1.6E+02 0.0035 34.8 15.1 52 123-174 368-419 (1486)
416 PF13747 DUF4164: Domain of un 66.2 66 0.0014 25.6 11.5 67 102-176 11-77 (89)
417 KOG0288 WD40 repeat protein Ti 66.1 49 0.0011 33.7 9.7 31 121-151 38-68 (459)
418 PF05911 DUF869: Plant protein 65.9 89 0.0019 34.3 12.3 44 111-154 121-164 (769)
419 PF12128 DUF3584: Protein of u 65.9 2.5E+02 0.0054 32.2 17.4 74 123-196 475-551 (1201)
420 PF15188 CCDC-167: Coiled-coil 65.9 33 0.00071 27.5 6.9 22 142-163 40-61 (85)
421 PF14661 HAUS6_N: HAUS augmin- 65.9 1.1E+02 0.0025 28.3 14.1 25 56-80 104-128 (247)
422 TIGR00998 8a0101 efflux pump m 65.9 55 0.0012 30.9 9.8 9 65-73 69-77 (334)
423 PF13094 CENP-Q: CENP-Q, a CEN 65.8 64 0.0014 27.8 9.4 36 122-157 46-81 (160)
424 PLN02189 cellulose synthase 65.6 4.4 9.5E-05 45.2 2.5 45 2-46 36-87 (1040)
425 PRK00888 ftsB cell division pr 65.5 26 0.00057 28.6 6.6 22 130-151 33-54 (105)
426 KOG0976 Rho/Rac1-interacting s 65.4 1.1E+02 0.0025 33.9 12.7 44 133-176 353-396 (1265)
427 PF04177 TAP42: TAP42-like fam 65.3 24 0.00052 34.3 7.4 26 257-282 261-286 (340)
428 KOG0972 Huntingtin interacting 65.0 1E+02 0.0022 30.4 11.2 16 140-155 282-297 (384)
429 PF02050 FliJ: Flagellar FliJ 65.0 63 0.0014 25.0 14.4 57 120-176 48-104 (123)
430 PF03670 UPF0184: Uncharacteri 65.0 47 0.001 26.5 7.6 29 122-150 31-59 (83)
431 PF02646 RmuC: RmuC family; I 64.9 1.3E+02 0.0029 28.8 12.4 8 70-77 211-218 (304)
432 PLN02638 cellulose synthase A 64.8 4.7 0.0001 45.2 2.6 45 2-46 19-70 (1079)
433 COG4477 EzrA Negative regulato 64.8 34 0.00073 35.9 8.5 53 123-175 103-155 (570)
434 PF10212 TTKRSYEDQ: Predicted 64.7 1E+02 0.0022 32.3 11.9 25 123-147 461-485 (518)
435 PF05278 PEARLI-4: Arabidopsis 64.6 1.4E+02 0.003 28.8 14.4 9 74-82 127-135 (269)
436 PLN02195 cellulose synthase A 64.6 5.7 0.00012 44.1 3.1 46 2-47 8-60 (977)
437 smart00132 LIM Zinc-binding do 64.4 6.3 0.00014 24.9 2.2 37 2-46 1-38 (39)
438 PF14362 DUF4407: Domain of un 64.4 1.3E+02 0.0028 28.4 13.3 16 156-171 186-201 (301)
439 COG5019 CDC3 Septin family pro 64.4 59 0.0013 32.6 9.8 32 141-172 338-369 (373)
440 COG3074 Uncharacterized protei 64.3 67 0.0014 25.0 10.4 13 127-139 28-40 (79)
441 PRK00736 hypothetical protein; 64.2 47 0.001 25.1 7.3 44 113-156 8-51 (68)
442 PF10267 Tmemb_cc2: Predicted 64.1 1.7E+02 0.0037 29.6 15.6 43 137-179 275-318 (395)
443 PRK09343 prefoldin subunit bet 64.1 31 0.00067 28.8 6.9 33 142-174 75-107 (121)
444 PRK00286 xseA exodeoxyribonucl 63.9 1.6E+02 0.0035 29.4 15.5 8 14-21 226-233 (438)
445 PF09789 DUF2353: Uncharacteri 63.8 59 0.0013 32.0 9.6 17 101-117 32-48 (319)
446 PRK11546 zraP zinc resistance 63.7 84 0.0018 27.5 9.6 7 144-150 95-101 (143)
447 PF14282 FlxA: FlxA-like prote 63.5 42 0.00091 27.4 7.4 19 118-136 20-38 (106)
448 KOG0978 E3 ubiquitin ligase in 63.4 2.3E+02 0.0049 30.9 15.8 53 129-181 571-623 (698)
449 COG3879 Uncharacterized protei 63.3 91 0.002 29.6 10.5 17 231-247 178-194 (247)
450 PF02994 Transposase_22: L1 tr 63.3 27 0.00058 34.6 7.4 52 129-183 142-193 (370)
451 PF11336 DUF3138: Protein of u 63.2 50 0.0011 33.9 9.2 51 221-271 164-224 (514)
452 PF11629 Mst1_SARAH: C termina 63.2 25 0.00055 25.4 5.2 16 144-159 25-40 (49)
453 KOG0825 PHD Zn-finger protein 63.2 3.4 7.4E-05 44.9 1.1 43 3-45 99-153 (1134)
454 PRK15396 murein lipoprotein; P 63.2 55 0.0012 25.7 7.6 48 118-168 26-73 (78)
455 PF10779 XhlA: Haemolysin XhlA 63.1 46 0.001 25.1 7.1 29 118-146 7-35 (71)
456 PHA01750 hypothetical protein 63.1 64 0.0014 24.9 7.6 16 136-151 40-55 (75)
457 PF10376 Mei5: Double-strand r 62.9 62 0.0013 30.1 9.2 26 147-172 187-212 (221)
458 PF14193 DUF4315: Domain of un 62.8 26 0.00056 27.8 5.8 30 136-165 6-35 (83)
459 PLN02436 cellulose synthase A 62.8 5.3 0.00012 44.7 2.5 46 2-47 38-90 (1094)
460 KOG0993 Rab5 GTPase effector R 62.7 43 0.00094 34.2 8.6 13 136-148 160-172 (542)
461 PF04136 Sec34: Sec34-like fam 62.7 1.1E+02 0.0023 26.8 11.7 40 136-175 33-72 (157)
462 KOG2010 Double stranded RNA bi 62.6 59 0.0013 32.3 9.3 44 136-179 152-195 (405)
463 PF14931 IFT20: Intraflagellar 62.5 95 0.002 26.2 11.9 39 135-173 70-108 (120)
464 PF06428 Sec2p: GDP/GTP exchan 62.5 11 0.00024 30.9 3.8 66 109-174 14-80 (100)
465 PF02388 FemAB: FemAB family; 62.5 53 0.0012 32.7 9.4 48 120-167 245-295 (406)
466 PRK10722 hypothetical protein; 62.4 1.1E+02 0.0024 29.1 10.8 46 123-171 164-209 (247)
467 PF12004 DUF3498: Domain of un 62.4 2.5 5.4E-05 43.6 0.0 44 113-159 422-465 (495)
468 PF10224 DUF2205: Predicted co 62.4 40 0.00087 26.6 6.7 26 125-150 31-56 (80)
469 COG1842 PspA Phage shock prote 62.3 1.3E+02 0.0029 27.9 16.9 7 70-76 24-30 (225)
470 PF01920 Prefoldin_2: Prefoldi 62.3 28 0.0006 27.3 6.0 31 135-165 66-96 (106)
471 PF05008 V-SNARE: Vesicle tran 62.3 64 0.0014 24.2 9.2 26 118-143 26-51 (79)
472 KOG4674 Uncharacterized conser 62.2 72 0.0016 38.1 11.3 37 133-176 103-139 (1822)
473 KOG1003 Actin filament-coating 62.2 45 0.00097 30.7 7.9 66 106-171 140-205 (205)
474 cd07657 F-BAR_Fes_Fer The F-BA 62.1 1.3E+02 0.0027 28.1 11.2 21 126-146 128-148 (237)
475 PF06160 EzrA: Septation ring 62.0 1.8E+02 0.0039 30.4 13.5 94 85-181 65-158 (560)
476 KOG4673 Transcription factor T 61.9 55 0.0012 35.6 9.6 31 135-165 908-938 (961)
477 PF10267 Tmemb_cc2: Predicted 61.9 1.5E+02 0.0032 30.0 12.3 36 103-138 255-290 (395)
478 PF08826 DMPK_coil: DMPK coile 61.7 66 0.0014 24.1 8.0 30 122-151 30-59 (61)
479 cd00890 Prefoldin Prefoldin is 61.7 36 0.00079 27.6 6.8 14 116-129 93-106 (129)
480 PF10174 Cast: RIM-binding pro 61.6 2.3E+02 0.0051 31.2 14.5 92 88-180 342-443 (775)
481 PF14662 CCDC155: Coiled-coil 61.5 1.3E+02 0.0029 27.5 13.2 87 89-175 53-139 (193)
482 PF05701 WEMBL: Weak chloropla 61.5 74 0.0016 32.9 10.5 67 113-179 291-357 (522)
483 PF01363 FYVE: FYVE zinc finge 61.5 1.7 3.7E-05 32.1 -1.0 26 2-27 11-39 (69)
484 PF05929 Phage_GPO: Phage caps 61.4 52 0.0011 31.7 8.6 93 98-196 173-266 (276)
485 PRK13169 DNA replication intia 61.4 72 0.0016 26.6 8.5 53 112-171 3-55 (110)
486 PRK00295 hypothetical protein; 61.2 62 0.0014 24.5 7.5 46 106-151 8-53 (68)
487 PF09628 YvfG: YvfG protein; 61.2 8.7 0.00019 29.0 2.7 62 99-174 7-68 (68)
488 PF15066 CAGE1: Cancer-associa 61.2 2E+02 0.0042 30.0 13.0 97 88-184 351-481 (527)
489 TIGR01834 PHA_synth_III_E poly 61.0 47 0.001 32.7 8.4 55 99-153 256-318 (320)
490 PF03961 DUF342: Protein of un 61.0 48 0.001 33.4 8.8 62 119-180 329-396 (451)
491 KOG0964 Structural maintenance 60.9 1.2E+02 0.0027 34.2 12.2 79 102-180 414-495 (1200)
492 PF10458 Val_tRNA-synt_C: Valy 60.9 66 0.0014 23.8 8.3 52 121-172 1-66 (66)
493 KOG4603 TBP-1 interacting prot 60.7 1.1E+02 0.0024 27.8 10.0 65 116-180 78-144 (201)
494 cd07653 F-BAR_CIP4-like The F- 60.5 1.4E+02 0.0029 27.3 11.8 83 98-180 86-168 (251)
495 PRK14155 heat shock protein Gr 60.4 72 0.0016 29.4 9.1 61 113-173 16-78 (208)
496 PRK03947 prefoldin subunit alp 60.4 49 0.0011 27.7 7.6 46 108-153 92-137 (140)
497 PRK14154 heat shock protein Gr 60.3 92 0.002 28.8 9.8 61 113-173 55-117 (208)
498 PRK04325 hypothetical protein; 60.2 60 0.0013 24.9 7.3 45 106-150 12-56 (74)
499 COG1730 GIM5 Predicted prefold 60.2 41 0.00089 29.4 7.1 45 121-165 91-135 (145)
500 PLN03188 kinesin-12 family pro 59.8 3.4E+02 0.0073 31.7 16.5 109 72-182 1096-1241(1320)
No 1
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=99.30 E-value=7.4e-11 Score=108.64 Aligned_cols=148 Identities=18% Similarity=0.325 Sum_probs=83.5
Q ss_pred CccccCccccc-CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccccCCChHHHHHHhcCCChHHHHHHHH
Q 022126 1 MRCNACWRELE-GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVDINPNDEWVNMAMAGVSPQILMKSAY 79 (302)
Q Consensus 1 l~CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~LnPse~~Kt~vL~GlsP~~Ime~a~ 79 (302)
.+||.|+..-. +..++|.|+||||..|.... ....||.|++++.. +.|+++-..-...+++..|..|-++..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~-----i~l~~slp~~ik~~F~d~~~~~~~~~~ 76 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRI-----IQLNRSLPTDIKSYFADPPRLIQDLYR 76 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeee-----eecccccchhHHHHccCcHHHHHHHHH
Confidence 48999997654 46789999999999997664 23499999998543 233333221224567767765555544
Q ss_pred ---HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 80 ---RSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 80 ---RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
+.++|+..|..+...++. +++. +-....+.+.+|..+.+.++.+ ++..+++...+|+.
T Consensus 77 ~l~r~i~fq~~qr~~~~~~~~----~~~~-~~req~~~~~~K~~e~~~ql~k--------------e~a~~~~nrk~~~~ 137 (233)
T KOG4739|consen 77 KLQRVINFQHKQRNLQVKLEL----KQLE-KDREQTAYFEKKTQEETQQLSK--------------EEAFIENNRKKLQA 137 (233)
T ss_pred HHHHHHhhHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 455555555543333321 1111 1122333444444444443332 34444555556666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022126 157 KSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 157 KsRq~~qLqelYdkLK~~ 174 (302)
..++.++++.+...+...
T Consensus 138 ~E~~nrka~~~~~~~e~~ 155 (233)
T KOG4739|consen 138 SELENRKAERLISALELK 155 (233)
T ss_pred HHHHHHHHHhchhhhhhc
Confidence 667777777666554433
No 2
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.4e-11 Score=112.78 Aligned_cols=53 Identities=30% Similarity=0.653 Sum_probs=46.1
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc---CCCCCCCCccccccCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS---NDAACPICDQVLSKSLMKPVD 54 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~---~~~~CPvC~~~l~~~div~~~ 54 (302)
|-||||.+.- .+||||-|||.||+-|+.+|+. +...||+|+...+.+.||++.
T Consensus 48 FdCNICLd~a-kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 48 FDCNICLDLA-KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred eeeeeecccc-CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 5699999875 4799999999999999999975 467899999999988888853
No 3
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=99.08 E-value=7.9e-11 Score=81.70 Aligned_cols=42 Identities=33% Similarity=0.908 Sum_probs=37.7
Q ss_pred ccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCcc
Q 022126 2 RCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICDQ 43 (302)
Q Consensus 2 ~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~ 43 (302)
+||+|++.+. ..+++|+|||+||..|+.+.......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 6999999993 47999999999999999999766889999985
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.07 E-value=1.1e-10 Score=85.34 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=45.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|++|.+.+. +||++.|||+||..|+.+++.....||+|+..++..++++
T Consensus 2 ~~Cpi~~~~~~-~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVMK-DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcCC-CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence 67999999986 5999999999999999999988889999999998777655
No 5
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.06 E-value=8.6e-11 Score=105.59 Aligned_cols=52 Identities=29% Similarity=0.737 Sum_probs=43.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc----------------CCCCCCCCccccccCCCccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS----------------NDAACPICDQVLSKSLMKPV 53 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~----------------~~~~CPvC~~~l~~~div~~ 53 (302)
+.|+||.+.+. ++|+|.|||+||+.||.+|+. ....||+|++.++..+++++
T Consensus 19 ~~CpICld~~~-dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPi 86 (193)
T PLN03208 19 FDCNICLDQVR-DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPI 86 (193)
T ss_pred cCCccCCCcCC-CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEe
Confidence 57999999885 699999999999999999863 13589999999988776654
No 6
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.94 E-value=4.8e-10 Score=75.66 Aligned_cols=38 Identities=39% Similarity=0.989 Sum_probs=33.0
Q ss_pred cccCcccccCCc-EEecCCccccHHHHHhhhcCCCCCCCC
Q 022126 3 CNACWRELEGRA-ISTTCGHLLCTEDANKILSNDAACPIC 41 (302)
Q Consensus 3 CNiC~~~l~~~~-vvT~CGHiFC~~Ci~~~~~~~~~CPvC 41 (302)
|+||.+.+.+ + +++.|||+||..|+.++++....||+|
T Consensus 1 C~iC~~~~~~-~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC-cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998875 6 799999999999999999888899998
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.91 E-value=8.7e-10 Score=76.20 Aligned_cols=38 Identities=26% Similarity=0.784 Sum_probs=29.8
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhhcC----CCCCCCC
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKILSN----DAACPIC 41 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~----~~~CPvC 41 (302)
|+||.+.|+ +||++.|||+||..|+.++|+. ...||.|
T Consensus 1 CpiC~~~~~-~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999996 6999999999999999999874 2579998
No 8
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.90 E-value=6.2e-08 Score=92.82 Aligned_cols=49 Identities=27% Similarity=0.655 Sum_probs=39.3
Q ss_pred ccccCccc--ccC--CcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCC
Q 022126 2 RCNACWRE--LEG--RAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLM 50 (302)
Q Consensus 2 ~CNiC~~~--l~~--~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~di 50 (302)
.|++|... ++. ..++..|||.||..|+..+|.. ...||+|++.+....+
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~f 58 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNF 58 (309)
T ss_pred CCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhc
Confidence 69999985 332 2456689999999999999865 6689999999987654
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.83 E-value=1.9e-09 Score=74.34 Aligned_cols=41 Identities=27% Similarity=0.798 Sum_probs=36.3
Q ss_pred ccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCc
Q 022126 2 RCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICD 42 (302)
Q Consensus 2 ~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~ 42 (302)
.|+||...+. +.++++.|||+||..|+..|+....+||+|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 4999999995 4788999999999999999998888999996
No 10
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=8e-09 Score=102.05 Aligned_cols=47 Identities=30% Similarity=0.704 Sum_probs=41.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
|.|+||...+. .||+|.|||.||..|+..++.....||+|+..+...
T Consensus 27 l~C~IC~d~~~-~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~ 73 (397)
T TIGR00599 27 LRCHICKDFFD-VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES 73 (397)
T ss_pred cCCCcCchhhh-CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence 58999999885 689999999999999999998877899999987643
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.68 E-value=1.9e-08 Score=71.23 Aligned_cols=45 Identities=33% Similarity=0.854 Sum_probs=39.2
Q ss_pred CccccCcccccCCcEEecCCcc-ccHHHHHhhhcCCCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHL-LCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
..|.+|++... .+++..|||. ||..|+.+++.....||+|+++++
T Consensus 3 ~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPR-DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBS-SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CCCccCCccCC-ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 36999999875 6999999999 999999999999999999999875
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.67 E-value=1.8e-08 Score=67.15 Aligned_cols=44 Identities=27% Similarity=0.791 Sum_probs=36.2
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCcccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVL 45 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l 45 (302)
.|++|...+....+++.|||.||..|+..++.. ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999998544445559999999999999886 77899999753
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=2.2e-08 Score=67.67 Aligned_cols=38 Identities=32% Similarity=0.875 Sum_probs=33.8
Q ss_pred cccCcccccCCcE-EecCCccccHHHHHhhhc--CCCCCCCC
Q 022126 3 CNACWRELEGRAI-STTCGHLLCTEDANKILS--NDAACPIC 41 (302)
Q Consensus 3 CNiC~~~l~~~~v-vT~CGHiFC~~Ci~~~~~--~~~~CPvC 41 (302)
|+||...+.. ++ ++.|||.||..|+.++++ ....||.|
T Consensus 1 C~iC~~~~~~-~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-PVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999998864 55 999999999999999988 57789998
No 14
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.9e-08 Score=101.08 Aligned_cols=52 Identities=27% Similarity=0.675 Sum_probs=44.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-----CCCCCCCccccccCCCccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-----DAACPICDQVLSKSLMKPV 53 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-----~~~CPvC~~~l~~~div~~ 53 (302)
+.|+||+.+.. -|+.|.|||+||..||.++|.- -..||+|+..++.+|+.++
T Consensus 187 ~~CPICL~~~~-~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 187 MQCPICLEPPS-VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CcCCcccCCCC-cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 47999999875 6999999999999999999853 4689999999998776554
No 15
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.55 E-value=5.4e-08 Score=74.40 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=41.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
|.|+||+..+. +||++.|||+|+..||.+|+.. ...||.|+..++..++++
T Consensus 5 f~CpIt~~lM~-dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~p 56 (73)
T PF04564_consen 5 FLCPITGELMR-DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIP 56 (73)
T ss_dssp GB-TTTSSB-S-SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE
T ss_pred cCCcCcCcHhh-CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceE
Confidence 68999999986 6999999999999999999987 899999999998877655
No 16
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.52 E-value=2.6e-08 Score=74.93 Aligned_cols=47 Identities=21% Similarity=0.674 Sum_probs=25.4
Q ss_pred CccccCcccccCCcE-EecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAI-STTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~v-vT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
|+|++|...|+ .|| ++.|.|+||..|+...+. ..||+|+++-...|+
T Consensus 8 LrCs~C~~~l~-~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~ 55 (65)
T PF14835_consen 8 LRCSICFDILK-EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDI 55 (65)
T ss_dssp TS-SSS-S--S-S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS-
T ss_pred cCCcHHHHHhc-CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHH
Confidence 68999999986 465 799999999999988754 359999999877776
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.46 E-value=4.8e-08 Score=94.20 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=44.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
|+|-||+..|. -|++|+|||.||.-||.+++.....||.|...+++.++
T Consensus 24 LRC~IC~eyf~-ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L 72 (442)
T KOG0287|consen 24 LRCGICFEYFN-IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL 72 (442)
T ss_pred HHHhHHHHHhc-CceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence 58999999886 69999999999999999999999999999999887654
No 18
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.43 E-value=8.5e-08 Score=90.92 Aligned_cols=46 Identities=28% Similarity=0.687 Sum_probs=41.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
++|-||...|+ -+++|+|||.||.-||..++.....||+|+....+
T Consensus 26 lrC~IC~~~i~-ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 26 LRCRICDCRIS-IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHhhhhhheee-cceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 47999999886 59999999999999999999999999999987643
No 19
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.40 E-value=2.7e-07 Score=59.26 Aligned_cols=38 Identities=37% Similarity=0.912 Sum_probs=33.2
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhhc-CCCCCCCC
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKILS-NDAACPIC 41 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC 41 (302)
|++|.... ..++++.|||+||..|+..++. ....||+|
T Consensus 1 C~iC~~~~-~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999885 4688999999999999999987 56779988
No 20
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.30 E-value=3.6e-07 Score=63.69 Aligned_cols=36 Identities=25% Similarity=0.726 Sum_probs=21.6
Q ss_pred cccCcccccC---CcEEecCCccccHHHHHhhhcC----CCCCC
Q 022126 3 CNACWRELEG---RAISTTCGHLLCTEDANKILSN----DAACP 39 (302)
Q Consensus 3 CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~----~~~CP 39 (302)
|+||++ +.+ .|++..|||+||++|+.++++. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899998 642 4899999999999999999763 45676
No 21
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=4.1e-07 Score=84.59 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=49.8
Q ss_pred CccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccc
Q 022126 1 MRCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVD 54 (302)
Q Consensus 1 l~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~ 54 (302)
+.|++|+..|++ .+|+..|||+||.+|..++...++.||+|+++++++|||.+.
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~Lq 278 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQ 278 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeee
Confidence 479999999974 588999999999999999999999999999999999998865
No 22
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.12 E-value=6.3e-07 Score=81.18 Aligned_cols=46 Identities=24% Similarity=0.624 Sum_probs=41.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
|.|-||.+.+. .||+|.|||.||..|+.+-+.....|-+|++....
T Consensus 197 F~C~iCKkdy~-spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYE-SPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhcc-chhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 67999999885 69999999999999999988889999999997654
No 23
>PF04641 Rtf2: Rtf2 RING-finger
Probab=98.12 E-value=1.6e-06 Score=81.23 Aligned_cols=57 Identities=21% Similarity=0.589 Sum_probs=47.1
Q ss_pred CccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccccCCChH
Q 022126 1 MRCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVDINPNDE 60 (302)
Q Consensus 1 l~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~LnPse~ 60 (302)
|+||++...|++ -.++-+|||+|+..++...- ....||+|++++...|||+ |+|.++
T Consensus 114 ~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~--Lnp~~e 173 (260)
T PF04641_consen 114 FICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP--LNPPEE 173 (260)
T ss_pred eECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE--ecCCcc
Confidence 589999999964 35577999999999999983 4678999999999999887 445544
No 24
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.09 E-value=3.5e-05 Score=76.86 Aligned_cols=43 Identities=23% Similarity=0.584 Sum_probs=35.9
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|++|...+.. -.+.+-|.|.|=..|+.+| ...+||+|+...+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 59999998863 3478889999999999999 4778999987665
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.08 E-value=2.9e-06 Score=65.08 Aligned_cols=41 Identities=27% Similarity=0.716 Sum_probs=33.1
Q ss_pred ccccCcccccC------------CcEEecCCccccHHHHHhhhcCCCCCCCCc
Q 022126 2 RCNACWRELEG------------RAISTTCGHLLCTEDANKILSNDAACPICD 42 (302)
Q Consensus 2 ~CNiC~~~l~~------------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~ 42 (302)
.|.||+..|.+ ..+...|||+|...||.+|++...+||+|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 48899998821 235668999999999999999888999996
No 26
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1e-06 Score=83.68 Aligned_cols=46 Identities=28% Similarity=0.624 Sum_probs=41.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
|.|-||++.+. .||+|.|||.||..|+.+.+.....|++|++....
T Consensus 242 f~c~icr~~f~-~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFY-RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccc-cchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 57999999996 69999999999999999999889999999997653
No 27
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.9e-06 Score=76.43 Aligned_cols=42 Identities=21% Similarity=0.695 Sum_probs=37.3
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQ 43 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~ 43 (302)
+.|+||...+. .+++..|||.||..|+..++.....||.|+.
T Consensus 14 ~~C~iC~~~~~-~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 14 LTCPICLEYFR-EPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccChhhHHHhh-cCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 57999999997 4689999999999999999886678999993
No 28
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.84 E-value=1.1e-05 Score=77.00 Aligned_cols=43 Identities=33% Similarity=0.785 Sum_probs=36.7
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhh-cCCCCCCCCccc
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKIL-SNDAACPICDQV 44 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~-~~~~~CPvC~~~ 44 (302)
|.|+.|...+. .++-| .|||.||.+||...+ +.++.||.|.+.
T Consensus 275 LkCplc~~Llr-np~kT~cC~~~fc~eci~~al~dsDf~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHCLLR-NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRK 319 (427)
T ss_pred ccCcchhhhhh-CcccCccccchHHHHHHhhhhhhccccCCCcccc
Confidence 68999999886 57777 799999999999875 469999999883
No 29
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=3.2e-05 Score=79.33 Aligned_cols=48 Identities=25% Similarity=0.573 Sum_probs=41.2
Q ss_pred ccccCcccccCC----cEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGR----AISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~----~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|.||++.+... +-...|||+||..|+..|++...+||.|+..+....
T Consensus 293 ~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~ 344 (543)
T KOG0802|consen 293 LCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYDYV 344 (543)
T ss_pred eeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhccc
Confidence 599999999743 678899999999999999999999999999554433
No 30
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.7e-05 Score=74.31 Aligned_cols=45 Identities=20% Similarity=0.484 Sum_probs=38.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCC-CCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAA-CPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~-CPvC~~~l~~ 47 (302)
.|.||..... .||...|+|.||..||.....+++. |++|+.++..
T Consensus 9 eC~IC~nt~n-~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 9 ECLICYNTGN-CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred cceeeeccCC-cCccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 4899998874 7899999999999999998777554 9999999865
No 31
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=6.8e-05 Score=73.00 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=40.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
+.|+||...|+....+.-|+|-||.+||.+.+. ....||.|++.|..
T Consensus 44 v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 44 VICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccc
Confidence 579999999986566667999999999999875 47899999998854
No 32
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=3.7e-05 Score=76.41 Aligned_cols=46 Identities=33% Similarity=0.807 Sum_probs=41.3
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
|.|++|...|- .||+|.|||.||..|+.+.+.....||.|+..+..
T Consensus 85 f~c~vc~~~l~-~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 85 FECCVCSRALY-PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hhhhhhHhhcC-CCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 56999998885 69999999999999999988889999999998764
No 33
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.51 E-value=4.9e-05 Score=55.95 Aligned_cols=39 Identities=21% Similarity=0.623 Sum_probs=28.1
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhc--CCCCCCC
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILS--NDAACPI 40 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~--~~~~CPv 40 (302)
+.|+++...|. +||.. .|||+|.++.|..++. ....||+
T Consensus 12 ~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 12 LKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 58999999997 58765 8999999999999984 4678999
No 34
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0016 Score=64.39 Aligned_cols=50 Identities=24% Similarity=0.520 Sum_probs=36.9
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhhcC--C-CCCCCCccccccCCCc
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKILSN--D-AACPICDQVLSKSLMK 51 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~~~--~-~~CPvC~~~l~~~div 51 (302)
.|.||-+... +-.-|.+|||+|-..|+.+||+. . +.||+|+-.+....++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 5889954332 23447789999999999999984 3 6899999666655544
No 35
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.34 E-value=4.8e-05 Score=73.37 Aligned_cols=48 Identities=31% Similarity=0.601 Sum_probs=42.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
+.|..|...|.+...|+-|=|.||++||.++++....||.|+..+.+.
T Consensus 16 itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 16 ITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred eehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 469999999987777889999999999999999999999999987654
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=71.09 Aligned_cols=45 Identities=27% Similarity=0.614 Sum_probs=38.0
Q ss_pred ccccCcccccC------------CcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEG------------RAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~------------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|-||++++-. .|--.+|||+|-..|+..|+++..+||+|+.++-
T Consensus 289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred eEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 48899998421 3457789999999999999999999999999853
No 37
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0014 Score=65.00 Aligned_cols=49 Identities=29% Similarity=0.636 Sum_probs=40.0
Q ss_pred CccccCccccc----CCcEEecCCccccHHHHHhhhcC--CCCCCCCccccccCC
Q 022126 1 MRCNACWRELE----GRAISTTCGHLLCTEDANKILSN--DAACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~----~~~vvT~CGHiFC~~Ci~~~~~~--~~~CPvC~~~l~~~d 49 (302)
+.|+||.+.+. ...|+..|||.|=.+||.+|+.. .+.||.|...-++++
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~ 59 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQ 59 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHH
Confidence 46999999875 25788999999999999999853 678999998765443
No 38
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0054 Score=58.58 Aligned_cols=49 Identities=31% Similarity=0.685 Sum_probs=39.6
Q ss_pred ccccCccccc-C---CcEEecCCccccHHHHHhhhc-CCCCCCCCccccccCCC
Q 022126 2 RCNACWRELE-G---RAISTTCGHLLCTEDANKILS-NDAACPICDQVLSKSLM 50 (302)
Q Consensus 2 ~CNiC~~~l~-~---~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~~di 50 (302)
.|++|..... + ...|-.|||..|.+|....|. ++..||.|.+.|.+..+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 5999886432 1 456779999999999999997 58899999999977554
No 39
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00028 Score=68.93 Aligned_cols=46 Identities=20% Similarity=0.559 Sum_probs=39.1
Q ss_pred ccccCccccc--CCcEEecCCccccHHHHHhhhcCC-CCCCCCcccccc
Q 022126 2 RCNACWRELE--GRAISTTCGHLLCTEDANKILSND-AACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~-~~CPvC~~~l~~ 47 (302)
.|.||.+.+. +.-.+.+|+|.|=..||+.|+... ..||+|+.....
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 5999999886 467799999999999999999865 559999996643
No 40
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0091 Score=56.27 Aligned_cols=45 Identities=29% Similarity=0.713 Sum_probs=37.7
Q ss_pred CccccCcccccC-----CcEEecCCccccHHHHHhhhcC-CCCCCCCcccc
Q 022126 1 MRCNACWRELEG-----RAISTTCGHLLCTEDANKILSN-DAACPICDQVL 45 (302)
Q Consensus 1 l~CNiC~~~l~~-----~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l 45 (302)
+.|+||...++. .|-+..|||.||..|+.++..+ .-.||-|+...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 469999998862 4667779999999999999876 56799999985
No 41
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.89 E-value=0.0004 Score=68.88 Aligned_cols=50 Identities=34% Similarity=0.693 Sum_probs=42.3
Q ss_pred CccccCcccccCCcEE-ecCCccccHHHHHhhhcCCCCCCCCccccccCCCc
Q 022126 1 MRCNACWRELEGRAIS-TTCGHLLCTEDANKILSNDAACPICDQVLSKSLMK 51 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv-T~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div 51 (302)
+.|++|...+. +|+. +.|||.||..|+..+......||+|...+.....+
T Consensus 22 l~C~~C~~vl~-~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 22 LLCPICMSVLR-DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred ccCcccccccc-CCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 46999999986 5777 59999999999999988899999999887665443
No 42
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.83 E-value=0.024 Score=53.19 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=37.6
Q ss_pred ccccCcccc--cC--CcEEec-CCccccHHHHHhhhcC-CCCCC--CCccccccC
Q 022126 2 RCNACWREL--EG--RAISTT-CGHLLCTEDANKILSN-DAACP--ICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l--~~--~~vvT~-CGHiFC~~Ci~~~~~~-~~~CP--vC~~~l~~~ 48 (302)
+|++|.... .. ..+|.+ |=|-.|.+|..+.|+. ...|| -|++-|.+.
T Consensus 12 ~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~ 66 (314)
T COG5220 12 RCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKI 66 (314)
T ss_pred cCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHh
Confidence 699998653 21 345666 9999999999999985 77899 999988654
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.81 E-value=0.0013 Score=52.34 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=28.0
Q ss_pred cEEecCCccccHHHHHhhhcC---CCCCCCCccccc
Q 022126 14 AISTTCGHLLCTEDANKILSN---DAACPICDQVLS 46 (302)
Q Consensus 14 ~vvT~CGHiFC~~Ci~~~~~~---~~~CPvC~~~l~ 46 (302)
.|.-.|||.|-..||.+|++. ...||.|++...
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 356789999999999999874 578999999764
No 44
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.78 E-value=0.00041 Score=73.34 Aligned_cols=47 Identities=15% Similarity=0.396 Sum_probs=37.2
Q ss_pred ccccCcccccCCcE--EecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAI--STTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~v--vT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|++|...+.+.-+ -..|+|+||..|+..|-....+||+|+..|..-
T Consensus 125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhee
Confidence 47788776654333 346999999999999988899999999998653
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00029 Score=51.85 Aligned_cols=44 Identities=25% Similarity=0.734 Sum_probs=36.7
Q ss_pred ccccCcccccCCcEEecCCcc-ccHHHHHhhhc-CCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCGHL-LCTEDANKILS-NDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~-~~~~CPvC~~~l~ 46 (302)
.|.||.+... +.|+-+|||. +|.+|..+.+. ....||+|+.++.
T Consensus 9 ECTICye~pv-dsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 9 ECTICYEHPV-DSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ceeeeccCcc-hHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4889998654 4778999997 59999999987 4789999999875
No 46
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.65 E-value=0.0007 Score=69.14 Aligned_cols=46 Identities=26% Similarity=0.636 Sum_probs=38.0
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhc-----CCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILS-----NDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-----~~~~CPvC~~~l~~~ 48 (302)
.|-+|.++- .++++++|-|.||..|+..+.. ...+||+|...|+-+
T Consensus 538 ~C~lc~d~a-ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 538 ECGLCHDPA-EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred eecccCChh-hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 588899875 4699999999999999977642 368999999988754
No 47
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.00098 Score=66.21 Aligned_cols=44 Identities=20% Similarity=0.440 Sum_probs=36.1
Q ss_pred CccccCcccccC--CcEEecCCccccHHHHHhhhc--------CCCCCCCCccc
Q 022126 1 MRCNACWRELEG--RAISTTCGHLLCTEDANKILS--------NDAACPICDQV 44 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~--------~~~~CPvC~~~ 44 (302)
+.|+||+....+ ..+.+.|+|+||..|+...++ ....||.|+-.
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 579999998765 678999999999999998864 25678887764
No 48
>PHA02926 zinc finger-like protein; Provisional
Probab=96.60 E-value=0.00097 Score=61.69 Aligned_cols=33 Identities=18% Similarity=0.530 Sum_probs=26.9
Q ss_pred ccccCcccccC--------CcEEecCCccccHHHHHhhhcC
Q 022126 2 RCNACWRELEG--------RAISTTCGHLLCTEDANKILSN 34 (302)
Q Consensus 2 ~CNiC~~~l~~--------~~vvT~CGHiFC~~Ci~~~~~~ 34 (302)
.|.||++.+.. ..++..|+|+||..||.+|...
T Consensus 172 eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~ 212 (242)
T PHA02926 172 ECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRT 212 (242)
T ss_pred CCccCccccccccccccccccccCCCCchHHHHHHHHHHHh
Confidence 59999986521 3678899999999999999753
No 49
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.44 E-value=0.0011 Score=70.11 Aligned_cols=49 Identities=33% Similarity=0.740 Sum_probs=41.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcC--CCCCCCCccccccCCCcc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSN--DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~--~~~CPvC~~~l~~~div~ 52 (302)
-|.+|.. . +.+++|.|||.||.+|+...+.. ...||.|+..+...+++.
T Consensus 456 ~c~ic~~-~-~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 456 WCHICCD-L-DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred ccccccc-c-ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhh
Confidence 5899998 4 57999999999999999998753 558999999997765544
No 50
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0022 Score=62.92 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=39.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|+||...-. .+|.+.|||--|..||.+++-+...|--|++....
T Consensus 424 lCpICyA~pi-~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 424 LCPICYAGPI-NAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cCcceecccc-hhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 4999987653 59999999999999999999999999999998753
No 51
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.20 E-value=0.62 Score=43.14 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=14.3
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHh
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANK 30 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~ 30 (302)
.|++|. +...+.+|..|+..
T Consensus 1 ~C~iC~---------~~~~~~~C~~C~~~ 20 (302)
T PF10186_consen 1 QCPICH---------NSRRRFYCANCVNN 20 (302)
T ss_pred CCCCCC---------CCCCCeECHHHHHH
Confidence 488888 34556778888766
No 52
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.00 E-value=0.14 Score=39.50 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++++.|+++-.+++.++.|++.|+.+|.+|.+.-.+-..+..+|++-++..+.++.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666677777777666665555555555555555555555543
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.93 E-value=0.55 Score=47.70 Aligned_cols=14 Identities=36% Similarity=0.926 Sum_probs=11.3
Q ss_pred CCCCCCCCcccccc
Q 022126 34 NDAACPICDQVLSK 47 (302)
Q Consensus 34 ~~~~CPvC~~~l~~ 47 (302)
....||.|+..+..
T Consensus 283 ~~~~Cp~C~~~~~~ 296 (562)
T PHA02562 283 KGGVCPTCTQQISE 296 (562)
T ss_pred CCCCCCCCCCcCCC
Confidence 45699999998864
No 54
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0079 Score=56.64 Aligned_cols=56 Identities=18% Similarity=0.414 Sum_probs=45.6
Q ss_pred CccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccccCCChH
Q 022126 1 MRCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVDINPNDE 60 (302)
Q Consensus 1 l~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~LnPse~ 60 (302)
|.|++-+-++++ -.++-.|||+|-..-+.++ ....|++|+..+...|+|++ ||.++
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dvIvl--Ng~~E 170 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDVIVL--NGTEE 170 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCeEee--CCCHH
Confidence 579998888875 4668899999999888776 47899999999999998774 45544
No 55
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.38 E-value=0.0067 Score=60.38 Aligned_cols=47 Identities=26% Similarity=0.559 Sum_probs=38.6
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhc--CCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILS--NDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~--~~~~CPvC~~~l~~~d 49 (302)
.|-||-+.-+ +.-|-.|||..|..|+..|-. ....||-|+-.+..-.
T Consensus 371 LCKICaendK-dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDK-DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCC-CcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 4888987654 567999999999999999864 3689999999987754
No 56
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.0065 Score=58.74 Aligned_cols=42 Identities=29% Similarity=0.621 Sum_probs=33.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l 45 (302)
.|-.|...|.-.--...|-|+||.+|+.-. .++.||.|...+
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 377899888633447899999999998764 478999998754
No 57
>PRK11637 AmiB activator; Provisional
Probab=95.35 E-value=3.4 Score=41.23 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..+.+..++.|+++..+++..+.+..++..+|+.+...|+++
T Consensus 214 k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 214 RNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666666777777777777777777777776543
No 58
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=95.31 E-value=0.37 Score=49.22 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++.+.+.|..++|++++.||++.+++.....+-.+++.+|+.-...|+.+++
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777778888888777777777777777778888888888888854
No 59
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.30 E-value=0.27 Score=47.52 Aligned_cols=72 Identities=19% Similarity=0.431 Sum_probs=48.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 110 AMQEKFTEKL---EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 110 ~L~~~l~~ki---~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.++++|++-+ .++..+-..|.=++.-|+..++.+...+.+|++.|+||+|.+..+...++.|+.++..+|..
T Consensus 88 evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 88 EVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554432 12333333344445666777777777777888888999999999999999998888876553
No 60
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.28 E-value=0.28 Score=45.01 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKR----CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~k----l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+....++|..|..+..+++..+|..|+++..+ +..+++.+.-.+-+++.|.+.++.|+++...|+.+.|.|=.+++
T Consensus 127 l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 127 LKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34666788888888889999999999887654 45678888888889999999999999999999999999988754
No 61
>PRK11637 AmiB activator; Provisional
Probab=95.25 E-value=0.38 Score=48.00 Aligned_cols=59 Identities=8% Similarity=0.116 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++.++..+++.+..++..++.+++.+++++.+++..+.+...++.++++-++.++..+.
T Consensus 69 ~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 69 QRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444443
No 62
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.24 E-value=0.0071 Score=44.41 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=28.7
Q ss_pred CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 13 RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 13 ~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
.-++..|||+.|..|..-. +-.-||.|++++...++
T Consensus 19 ~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~~ 54 (55)
T PF14447_consen 19 KGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDDP 54 (55)
T ss_pred ccccccccceeeccccChh--hccCCCCCCCcccCCCC
Confidence 4678999999999996553 56789999999875543
No 63
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.0071 Score=57.47 Aligned_cols=62 Identities=18% Similarity=0.427 Sum_probs=43.4
Q ss_pred ccccCcccccC---------CcEEecCCccccHHHHHhhh--cCCCCCCCCccccccCCCcccccCCChHHHHHHhcC
Q 022126 2 RCNACWRELEG---------RAISTTCGHLLCTEDANKIL--SNDAACPICDQVLSKSLMKPVDINPNDEWVNMAMAG 68 (302)
Q Consensus 2 ~CNiC~~~l~~---------~~vvT~CGHiFC~~Ci~~~~--~~~~~CPvC~~~l~~~div~~~LnPse~~Kt~vL~G 68 (302)
.|.+|.+.+.. +....+|+|+|-+.||..|. .+..+||-|++... +...-.||.|. .-+++|
T Consensus 226 vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd---l~rmfsnpWek--ph~~yg 298 (328)
T KOG1734|consen 226 VCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD---LKRMFSNPWEK--PHVWYG 298 (328)
T ss_pred hhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh---HhhhccCcccc--chhHHH
Confidence 48899987742 45678999999999999985 46889999999753 22223355543 334444
No 64
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=95.11 E-value=0.17 Score=46.72 Aligned_cols=61 Identities=16% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.++........++++.++++.+.+++...+++.+|++..+++.+++..|-+-|.+|+.+++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3344555666667777777777888888888888888888888888888888888888755
No 65
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.0095 Score=58.41 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=35.2
Q ss_pred ccccCcccccCCc-------EEecCCccccHHHHHhhh--cC-----CCCCCCCccccc
Q 022126 2 RCNACWRELEGRA-------ISTTCGHLLCTEDANKIL--SN-----DAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~-------vvT~CGHiFC~~Ci~~~~--~~-----~~~CPvC~~~l~ 46 (302)
.|-||...+...+ ++-.|-|.||..||.+|- .. ...||.|+....
T Consensus 163 ~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 163 ECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 5889998875433 346799999999999996 33 578999998754
No 66
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.05 E-value=0.014 Score=50.14 Aligned_cols=47 Identities=21% Similarity=0.544 Sum_probs=37.6
Q ss_pred ccccCcccccCCcEEe---cCCccccHHHHHhhhcC---CCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAIST---TCGHLLCTEDANKILSN---DAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT---~CGHiFC~~Ci~~~~~~---~~~CPvC~~~l~~~ 48 (302)
.||||.+.-.+.-++. -||-..|-.|-...|+. -..||+|++.+..+
T Consensus 82 eCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 82 ECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 6999998765544444 49999999999999874 56899999998654
No 67
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.99 E-value=0.02 Score=45.30 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=29.5
Q ss_pred cEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 14 AISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 14 ~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.+.-.|.|.|=..||.+|+.....||.|++...
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 456789999999999999999999999998764
No 68
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.86 E-value=0.63 Score=42.66 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.+++.+...+.+..-..++.+++..+.+...|+.+|++|++.+.+-..+...|+...+.++..
T Consensus 105 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 105 LTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334445555556666666677777777666666666666666556666554
No 69
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.51 E-value=0.029 Score=40.16 Aligned_cols=44 Identities=30% Similarity=0.756 Sum_probs=27.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
-|-.||-.- +..|.-=.|-.|..|+...++.+..||+|+++|..
T Consensus 4 nCKsCWf~~--k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN--KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcC--CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 477899664 35555557999999999999999999999998853
No 70
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=94.30 E-value=3.4 Score=37.20 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQE 149 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~E 149 (302)
+...+.+++.++..|..++.+++...+.++++.+|
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e 159 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEE 159 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 71
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=94.12 E-value=2 Score=37.70 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
+-+.-+.+.|+.+.+.+..+-.-+..-+++..|-.+.|.||++++.+|-+-...|..+.|.+|
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555777888889999999999999988888888877654
No 72
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.96 E-value=0.019 Score=57.12 Aligned_cols=45 Identities=24% Similarity=0.578 Sum_probs=36.0
Q ss_pred CccccCcccccC---CcEEecCCccccHHHHHhhhcC--CCCCCCCcccc
Q 022126 1 MRCNACWRELEG---RAISTTCGHLLCTEDANKILSN--DAACPICDQVL 45 (302)
Q Consensus 1 l~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~--~~~CPvC~~~l 45 (302)
+.|+.|.+.+.- .--..+|+|||-..|+..++++ +++||.|++-.
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 469999988742 3346789999999999998764 88999999543
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=93.79 E-value=4.3 Score=43.83 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=13.5
Q ss_pred CCCCCCCCccccccCCC
Q 022126 34 NDAACPICDQVLSKSLM 50 (302)
Q Consensus 34 ~~~~CPvC~~~l~~~di 50 (302)
....||+|++++...++
T Consensus 450 ~~~~Cp~C~r~~~~~~~ 466 (880)
T PRK02224 450 EAGKCPECGQPVEGSPH 466 (880)
T ss_pred hcccCCCCCCcCCCcch
Confidence 35789999999977654
No 74
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.49 E-value=1.7 Score=39.77 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
..+|+.++++..+.+.||.+.+.+=..++.++++--+.|+.+.+..
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555554433
No 75
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=93.49 E-value=5.5 Score=38.67 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=25.2
Q ss_pred HhcCCChHHHHHHHHHhhhhhhhhhHHHHHHH---HHHHHHHHHHHHHHH
Q 022126 65 AMAGVSPQILMKSAYRSVMFYLGQKELEMQYK---MNRIVAQCRQKCEAM 111 (302)
Q Consensus 65 vL~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ---~~~l~~~lreK~e~L 111 (302)
-|-|-+|-.+|=.|+ |+ |+.||...+..-. .-.-++.+++|++.|
T Consensus 20 gLvGGp~Gl~ml~Ag-A~-Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~M 67 (301)
T PF06120_consen 20 GLVGGPPGLVMLGAG-AW-YYFYQNAEQARQEAIEFADSLDELKEKLKEM 67 (301)
T ss_pred HhhcchHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc
Confidence 367889999986554 44 4456665542211 112345666665555
No 76
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=93.42 E-value=1.7 Score=33.45 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 108 CEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 108 ~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
.+.|++.|+++..+-.++|..++.....+.++...|+..+.+|......=+++...|
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357888999999999999999998888888888899999888877777666665554
No 77
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.20 E-value=1.1 Score=35.34 Aligned_cols=55 Identities=18% Similarity=0.395 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+++++.|+++-..+.-++-|++.|+.+|..|.+...+-......|..-..+||.+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344444444445666777777777777777766554333333344444444433
No 78
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.18 E-value=0.81 Score=37.85 Aligned_cols=61 Identities=26% Similarity=0.394 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR---------QKRKLDEMYDQLRSEY 175 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR---------q~~qLqelYdkLK~~~ 175 (302)
+++.+.++..++..|+..+.++-.|...|+.+|+.|.+.+.+... ...++.+.|+.|.+=|
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY 82 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHH
Confidence 445666677777888888889989999999999999988876533 2234445555555443
No 79
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.03 E-value=7.7 Score=36.20 Aligned_cols=45 Identities=18% Similarity=0.395 Sum_probs=27.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.++...|...+.++...-+..-....++++-|..||.+++.+|.+
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333445577778888999999988887
No 80
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=92.73 E-value=1 Score=41.76 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
++.+.+++..++..++.|++...++.+.++++..+=.+|...++.-||.|..++.+++...
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4556677777777788888888888888888888888888999999999998888886653
No 81
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=92.71 E-value=2.1 Score=34.34 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEM 167 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqel 167 (302)
.++..++.++..+.+++++|+.++.-...+.++|-.+
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566677777777777777777776555555555444
No 82
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=92.66 E-value=0.099 Score=37.45 Aligned_cols=43 Identities=28% Similarity=0.626 Sum_probs=23.0
Q ss_pred cccCccccc--C-CcEEecCCccccHHHHHhhhc-CCCCCCCCcccc
Q 022126 3 CNACWRELE--G-RAISTTCGHLLCTEDANKILS-NDAACPICDQVL 45 (302)
Q Consensus 3 CNiC~~~l~--~-~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l 45 (302)
|++|-..+. + ...--.||+-.|..|..+..+ ....||.|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788888874 2 345567999999999999986 488999999864
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=92.62 E-value=0.87 Score=33.56 Aligned_cols=46 Identities=15% Similarity=0.378 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+.+++..++..+..++++|++|.+..++-.+-.++|-.||+-+=+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555556666777777777777777667777888888876644
No 84
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.58 E-value=2.8 Score=40.56 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHH
Q 022126 74 LMKSAYRSVMFYLGQKELEMQY 95 (302)
Q Consensus 74 Ime~a~RAi~Fw~~Q~~qe~~y 95 (302)
+|+.=.+.+.=++-...-.+.|
T Consensus 119 ~m~~q~~~vK~~aRl~aK~~WY 140 (325)
T PF08317_consen 119 LMDNQFQLVKTYARLEAKKMWY 140 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4544444444444444444444
No 85
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=92.51 E-value=4 Score=37.84 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=53.6
Q ss_pred hhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 82 VMFYLGQKELE--MQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 82 i~Fw~~Q~~qe--~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
+.|-+||...+ +.|-|.+.+.. +.-...++.++..++..-..|..++++|+..++.-++.+.|+.+.-+.|-.
T Consensus 160 Mt~aAYqtlyeSsvAfGmRKALqa-----e~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk~~ 234 (259)
T KOG4001|consen 160 MTFAAYQTLYESSVAFGMRKALQA-----ENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKKMK 234 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45678888776 33444332211 122334455666666666667777777877777777777777554443332
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q 022126 160 -QKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 160 -q~~qLqelYdkLK~~~e~~ 178 (302)
+..-|.+--.+||++++.+
T Consensus 235 eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 235 EEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 3455555566777776543
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.38 E-value=2.7 Score=40.71 Aligned_cols=64 Identities=22% Similarity=0.459 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+.+.+.+.+++.+...+...+.+++.+.+.+.++-.++-+.|.+...++.++++-.+.|+.+++
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555545555555555444444444444444443
No 87
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.37 E-value=0.037 Score=61.77 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=40.7
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
+.|.+|.+.+.+.-.++.|||.+|..|..-|......||+|+....
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhhh
Confidence 3699999999867779999999999999999999999999996553
No 88
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.36 E-value=4.1 Score=31.40 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
+..++..|+.+...+..+.+.|+.+|+.|+
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555
No 89
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.02 E-value=3.3 Score=34.94 Aligned_cols=49 Identities=31% Similarity=0.432 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.....++..++.+++.|+.+.+-+-+.|-||+-+...|+.-...||.=|
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3344556777888888888888888888899999888887777777554
No 90
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.00 E-value=6.2 Score=39.15 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKF-------SEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky-------~EKsRq~~qLqelYdkLK~~~e 176 (302)
+..+-.+....+.+..+++++| .++++++.++.+-.+++|.+++
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444 4455566666666666666543
No 91
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.91 E-value=1.9 Score=38.28 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+......++.++..|+.+|.+|..++++...++..+++-|..|-.=++.+|.-+.
T Consensus 102 ~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 102 LQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556777777888888888888888888888889999998888887776543
No 92
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=1.3 Score=48.06 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
++.+.+....|+-+++||.++|.++.-++.||.+-|+.||.+++.++.++
T Consensus 673 ~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~ 722 (970)
T KOG0946|consen 673 IENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQ 722 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 34444555666777888999999999999999999999999988554443
No 93
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.87 E-value=6.2 Score=42.82 Aligned_cols=17 Identities=12% Similarity=0.052 Sum_probs=11.3
Q ss_pred hHHHHHHhcCCChHHHH
Q 022126 59 DEWVNMAMAGVSPQILM 75 (302)
Q Consensus 59 e~~Kt~vL~GlsP~~Im 75 (302)
.-....-..|+++++|-
T Consensus 484 ~a~~iA~~~Glp~~ii~ 500 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIE 500 (771)
T ss_pred HHHHHHHHhCcCHHHHH
Confidence 33444567899888776
No 94
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.65 E-value=0.19 Score=35.67 Aligned_cols=41 Identities=22% Similarity=0.630 Sum_probs=32.5
Q ss_pred ccccCccccc-CCcEEecCC-----ccccHHHHHhhhcC--CCCCCCCc
Q 022126 2 RCNACWRELE-GRAISTTCG-----HLLCTEDANKILSN--DAACPICD 42 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~CG-----HiFC~~Ci~~~~~~--~~~CPvC~ 42 (302)
.|-||+.... +.++++.|. |.|=..|+.+|+.. ...||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4789987322 578999995 88999999999853 56899996
No 95
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.59 E-value=1.8 Score=41.28 Aligned_cols=38 Identities=13% Similarity=0.387 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
.|+.+..+++.+..++++.+.+.+.++.++.+|+.+..
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444433333
No 96
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.52 E-value=0.095 Score=53.01 Aligned_cols=31 Identities=32% Similarity=0.635 Sum_probs=26.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
++|++|...+ .+|+|.+|||..|..|+....
T Consensus 5 lkc~vc~~f~-~epiil~c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 5 LKCPVCGSFY-REPIILPCSHNLCQACARNIL 35 (699)
T ss_pred ccCceehhhc-cCceEeecccHHHHHHHHhhc
Confidence 6899999776 479999999999999997653
No 97
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.41 E-value=3.8 Score=42.75 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.+.+|+.+..++....+.+..++.+|...+.+...++.+|++-+..|..+.
T Consensus 186 e~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 186 EMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666777777777777776666777776666665443
No 98
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.38 E-value=3.2 Score=35.86 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
...+++.+|..|.+|+..++.+++.+..+..+++.++.+..
T Consensus 29 ~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~ 69 (143)
T PF12718_consen 29 ENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE 69 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44444555555555555555555555555555555555444
No 99
>PRK10780 periplasmic chaperone; Provisional
Probab=91.34 E-value=5.8 Score=34.57 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=22.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 82 VMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAK 131 (302)
Q Consensus 82 i~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~ 131 (302)
++|-..|.-+.-.=+...+.+.+..+.+..+..++.+..++...+++++.
T Consensus 26 Ig~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~ 75 (165)
T PRK10780 26 IAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQR 75 (165)
T ss_pred eEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555433221222344444444444444444444455444444443
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.33 E-value=0.086 Score=55.41 Aligned_cols=40 Identities=25% Similarity=0.682 Sum_probs=31.4
Q ss_pred CccccCccccc---CCcEEecCCccccHHHHHhhhcCCCCCCCCcc
Q 022126 1 MRCNACWRELE---GRAISTTCGHLLCTEDANKILSNDAACPICDQ 43 (302)
Q Consensus 1 l~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~ 43 (302)
+.|.||...+. -.||...|||+.|..|+... ...+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 46999966653 36999999999999999987 356788 554
No 101
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.29 E-value=7.9 Score=40.97 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=19.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
|.+.+.+++..|..+|+|+.+...+|..-.+.|+
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666665555555555554
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.09 E-value=6.2 Score=37.25 Aligned_cols=66 Identities=23% Similarity=0.523 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+...|...+.++...++.+......++.+.+.++.+..+++.+|++.......++.-...||..++
T Consensus 48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld 113 (312)
T PF00038_consen 48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLD 113 (312)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 344455566666666666666566666666666777777766666666666666665555555544
No 103
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.08 E-value=5.7 Score=42.80 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHhhhhh
Q 022126 70 SPQILMKSAYRSVMFY 85 (302)
Q Consensus 70 sP~~Ime~a~RAi~Fw 85 (302)
++.+.++...+|+...
T Consensus 533 ~~~E~l~lL~~a~~vl 548 (717)
T PF10168_consen 533 SPQECLELLSQATKVL 548 (717)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4556677777776543
No 104
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.04 E-value=8.8 Score=42.94 Aligned_cols=84 Identities=24% Similarity=0.372 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhh-c-CCC
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM----KRSA-I-QPS 186 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~----~rsa-~-~~a 186 (302)
+.++..+.+++..+..|+..+..++.....|+.+.+++.+++.+...++-.++.....|+++.+.. +... . ...
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~dk 469 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTDK 469 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334455566666677777777778888888888888888888888888888888888888776633 2222 2 234
Q ss_pred CCCCCCCCCC
Q 022126 187 NSFYPRNDPD 196 (302)
Q Consensus 187 ~~~~~~~~~~ 196 (302)
.++|+.+-|.
T Consensus 470 vs~FG~~m~~ 479 (1074)
T KOG0250|consen 470 VSAFGPNMPQ 479 (1074)
T ss_pred hhhcchhhHH
Confidence 4567755443
No 105
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.96 E-value=15 Score=35.65 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+.++|..+.++...++.++++..+.+.+
T Consensus 232 ~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 232 EELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333
No 106
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.89 E-value=1 Score=43.91 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+++.+++..+...+.++...+.++..+..++.+|+..|++..++..+|+.-++....+++.+
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 44455555555556666666667777777777777777777777777777777666665544
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.89 E-value=0.1 Score=51.33 Aligned_cols=56 Identities=23% Similarity=0.571 Sum_probs=44.4
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcccccCC
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKPVDINP 57 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~~~LnP 57 (302)
.|+.|..++. ..++-..||--.|.-|....-.+ ...||+|++...+..+-.+.|.|
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~~s~ 75 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVTLSP 75 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEecCH
Confidence 4999999874 35778899999999998877554 77999999999887775555544
No 108
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.75 E-value=1.5 Score=39.30 Aligned_cols=55 Identities=18% Similarity=0.371 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+...+.....++..++.+...|+.++.+|.+.++||.+-+.-|+.-|..|.-++.
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444455555555555555555555555555555555555555444443
No 109
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.75 E-value=6.6 Score=38.18 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=14.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..+++..+++..|+++.+.+..-.+....+.-..+..+
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~ 254 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTE 254 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 110
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.64 E-value=8.1 Score=41.99 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=15.5
Q ss_pred ChHHHHHHhcCCChHHHHHHHHHhhhhhhh
Q 022126 58 NDEWVNMAMAGVSPQILMKSAYRSVMFYLG 87 (302)
Q Consensus 58 se~~Kt~vL~GlsP~~Ime~a~RAi~Fw~~ 87 (302)
|.-....-..|+++++|- +|-.++..
T Consensus 488 S~a~~iA~~~Glp~~ii~----~A~~~~~~ 513 (782)
T PRK00409 488 SNAFEIAKRLGLPENIIE----EAKKLIGE 513 (782)
T ss_pred cHHHHHHHHhCcCHHHHH----HHHHHHhh
Confidence 333444567899888876 44444443
No 111
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=90.63 E-value=8.7 Score=42.87 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=30.9
Q ss_pred ccccCcccccC-CcEEecCC---ccccHHHHHhhhcC---CCCCCCCccccc
Q 022126 2 RCNACWRELEG-RAISTTCG---HLLCTEDANKILSN---DAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CG---HiFC~~Ci~~~~~~---~~~CPvC~~~l~ 46 (302)
+|++|..++.+ ..++.--+ .--|..|..-.... -..||.|+-.+.
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (1006)
T PRK12775 798 TCPKCHRPLEGDEEYVCCATSELQWRCDDCGKVSEGFAFPYGMCPACGGKLQ 849 (1006)
T ss_pred cCcccCCCCCCCceeEEecCcceeeehhhhccccccccCCcCcCcccccchh
Confidence 69999999975 34433222 33499998776432 357999999864
No 112
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.58 E-value=3.6 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq 151 (302)
+-++-|.+.|+.||+.|+
T Consensus 21 ~LLQmEieELKEknn~l~ 38 (79)
T COG3074 21 TLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHhhHhH
Confidence 334444444444444433
No 113
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=90.53 E-value=13 Score=33.52 Aligned_cols=52 Identities=27% Similarity=0.421 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKS--------RQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs--------Rq~~qLqelYdkLK~~~e~~~ 179 (302)
.+..++..++.+.+.|+++..+|..+++.-. -+..+.++-++.||+...+++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555554443322 233445555666666655543
No 114
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.39 E-value=0.17 Score=49.95 Aligned_cols=44 Identities=27% Similarity=0.667 Sum_probs=36.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhh--hcCCCCCCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKI--LSNDAACPICDQVL 45 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~--~~~~~~CPvC~~~l 45 (302)
+.|-||-..++ ...+++|+|-.|..|+.+. +-....||.|++.-
T Consensus 62 ~~C~ICA~~~T-Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 62 MNCQICAGSTT-YSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred ceeEEecCCce-EEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 46889998886 4669999999999999876 34688999999864
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.11 E-value=4.2 Score=35.78 Aligned_cols=44 Identities=30% Similarity=0.410 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+..+..+...++++..++++...+...++..+++.|+.|.....
T Consensus 139 ~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (191)
T PF04156_consen 139 IKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQ 182 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444434444445555555555666666666555543
No 116
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=90.00 E-value=11 Score=32.08 Aligned_cols=64 Identities=19% Similarity=0.406 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
..++..+..+...+..++.++...+....++++++..+..+.+.-..+.+++.......+.+++
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~ 132 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYE 132 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666777777777777776666677777777777666665
No 117
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.91 E-value=11 Score=32.19 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022126 168 YDQLRS 173 (302)
Q Consensus 168 YdkLK~ 173 (302)
|++||.
T Consensus 142 ~~kLk~ 147 (151)
T PF11559_consen 142 IEKLKE 147 (151)
T ss_pred HHHHHH
Confidence 333333
No 118
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.85 E-value=3.3 Score=43.64 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK---SRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK---sRq~~qLqelYdkLK~~~ 175 (302)
++++++.+..+++.|+..+.+|+.+++.|+.+..++.+..+++ .|+++.+++-.+.|+.++
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555555555555555555543 345555555555555444
No 119
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=89.85 E-value=3.2 Score=39.01 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 150 LQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 150 Lq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++.++.-..++.+|++++++|--++.
T Consensus 168 ~~erlk~le~E~s~LeE~~~~l~~ev~ 194 (290)
T COG4026 168 VQERLKRLEVENSRLEEMLKKLPGEVY 194 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHH
Confidence 333333333445555555554443333
No 120
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=89.81 E-value=16 Score=42.23 Aligned_cols=29 Identities=21% Similarity=0.051 Sum_probs=15.4
Q ss_pred HHhcCCChHHHHHHHHHhhhhhhhhhHHH
Q 022126 64 MAMAGVSPQILMKSAYRSVMFYLGQKELE 92 (302)
Q Consensus 64 ~vL~GlsP~~Ime~a~RAi~Fw~~Q~~qe 92 (302)
.-|..+++..|-+++.....+-..+..++
T Consensus 212 ~~l~~l~~~~i~~l~e~~~~~~~~~~~le 240 (1353)
T TIGR02680 212 EALPPLDDDELTDVADALEQLDEYRDELE 240 (1353)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666555555444544554444
No 121
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=89.68 E-value=2.8 Score=34.92 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
++.+.++..++..|+..+.++-.|...|+-+|+-|.+.+.+
T Consensus 14 e~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 14 EQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777778878888888888888887775
No 122
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.64 E-value=17 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
.++.+.++|..+.++.+.++.+++.-+..+
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444443333
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.57 E-value=5.7 Score=37.91 Aligned_cols=63 Identities=8% Similarity=0.222 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE-SMKRSAI 183 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e-~~~rsa~ 183 (302)
++..+++.|..++.++..+.+.+++++.+++...++-..++..+.+-+.....-++ .+|..+.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433333222222 2555555
No 124
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.56 E-value=7.8 Score=29.61 Aligned_cols=55 Identities=18% Similarity=0.368 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
...++.+..++...+.++..|+++.......+.++.....+|..-.+.|+.+++.
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555666666666666666666666666666666666666666543
No 125
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.48 E-value=0.99 Score=31.78 Aligned_cols=32 Identities=28% Similarity=0.492 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+.|+.|+.....+..|.+.|+.++.+|..++.
T Consensus 12 ~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 12 ASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444445555555666666655555543
No 126
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=89.44 E-value=0.13 Score=39.08 Aligned_cols=46 Identities=17% Similarity=0.518 Sum_probs=22.3
Q ss_pred CccccCccccc-C----CcEE--ecCCccccHHHHHhhhcC---C--------CCCCCCccccc
Q 022126 1 MRCNACWRELE-G----RAIS--TTCGHLLCTEDANKILSN---D--------AACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~-~----~~vv--T~CGHiFC~~Ci~~~~~~---~--------~~CPvC~~~l~ 46 (302)
+.|.||+..+. + ..+= ..|+++|=..|+.+||.. . ..||.|+++++
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46999998754 2 1222 268888888899999751 1 25999999875
No 127
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.37 E-value=6.6 Score=37.86 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 022126 156 EKSRQKRKLDEMY 168 (302)
Q Consensus 156 EKsRq~~qLqelY 168 (302)
|-+-|..||+.|.
T Consensus 153 DINiQN~KLEsLL 165 (305)
T PF15290_consen 153 DINIQNKKLESLL 165 (305)
T ss_pred hhhhhHhHHHHHH
Confidence 3334444444443
No 128
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=89.35 E-value=15 Score=32.50 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=9.2
Q ss_pred hcCCChHH---HHHHHHHh
Q 022126 66 MAGVSPQI---LMKSAYRS 81 (302)
Q Consensus 66 L~GlsP~~---Ime~a~RA 81 (302)
-+|++++. |+++...+
T Consensus 13 ~~Gft~~QAe~i~~~l~~~ 31 (177)
T PF07798_consen 13 AAGFTEEQAEAIMKALREV 31 (177)
T ss_pred HCCCCHHHHHHHHHHHHHH
Confidence 46888873 55444444
No 129
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=89.33 E-value=4.3 Score=36.08 Aligned_cols=8 Identities=13% Similarity=0.347 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 022126 167 MYDQLRSE 174 (302)
Q Consensus 167 lYdkLK~~ 174 (302)
-++.||.|
T Consensus 176 ~~~~LkkQ 183 (192)
T PF05529_consen 176 EIEALKKQ 183 (192)
T ss_pred HHHHHHHH
Confidence 33333333
No 130
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=89.28 E-value=13 Score=31.75 Aligned_cols=58 Identities=9% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.+.+.|+.+-.|++++..-.+..+.+..|+++....-..+...++.+...|..++..+
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666677777888888888877778888888888887776654
No 131
>PHA03096 p28-like protein; Provisional
Probab=89.17 E-value=0.21 Score=47.88 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=30.0
Q ss_pred ccccCcccccC-------CcEEecCCccccHHHHHhhhcC---CCCCCCCcc
Q 022126 2 RCNACWRELEG-------RAISTTCGHLLCTEDANKILSN---DAACPICDQ 43 (302)
Q Consensus 2 ~CNiC~~~l~~-------~~vvT~CGHiFC~~Ci~~~~~~---~~~CPvC~~ 43 (302)
.|.+|.+.... .-.+..|-|.||..|+..|... ...||.|+.
T Consensus 180 ~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 180 ICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 48899886542 2457789999999999988642 445555555
No 132
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.95 E-value=8.5 Score=37.30 Aligned_cols=69 Identities=13% Similarity=0.345 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+++...++..++..++.+...++.+.+..-+...+++..+.+...+...+..-|+.+..+++.+++..+
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344556666777777777778877888888888999988988889999999999999999888888754
No 133
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.82 E-value=16 Score=35.21 Aligned_cols=72 Identities=21% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhcCCCC--
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK--------------RKLDEMYDQLRSEYESMKRSAIQPSN-- 187 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~--------------~qLqelYdkLK~~~e~~~rsa~~~a~-- 187 (302)
+.+..|+.....+-..+++|.+..+-|...+.-|.-+. .+|+.-.-.+|.++|..+.++....+
T Consensus 60 ~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl 139 (307)
T PF10481_consen 60 NEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSL 139 (307)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Confidence 33444444444444455555555555554444444333 33333444455665554444443332
Q ss_pred CCCCCCCC
Q 022126 188 SFYPRNDP 195 (302)
Q Consensus 188 ~~~~~~~~ 195 (302)
+++..+.-
T Consensus 140 ~~~stpqk 147 (307)
T PF10481_consen 140 NPCSTPQK 147 (307)
T ss_pred cccCCchh
Confidence 24554443
No 134
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.80 E-value=5.1 Score=29.67 Aligned_cols=49 Identities=20% Similarity=0.443 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
.|+.++.+.++.|..|+..|..+...++-+ ++...+|-.|-...|.+.-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~---v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRAD---VQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhH
Confidence 467778888888888888888888888875 4566778888888887653
No 135
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.77 E-value=25 Score=35.70 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++.+..+...++.+++.++.+..+|.....+....+.+++..|.+++.+++
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~ 272 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444433333322333333444444444444433
No 136
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.69 E-value=12 Score=41.19 Aligned_cols=40 Identities=23% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSR-------QKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsR-------q~~qLqelYdkLK~~~e 176 (302)
+..++.+.++|.+|.+.+++-.| |+....++|++||+++.
T Consensus 458 ~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 458 EQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444455555555555555444 34444455556655543
No 137
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=88.63 E-value=15 Score=41.30 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
++..+.+.++.++++..++..+|++++...++++.-++.|+++++.+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~ 384 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL 384 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777788888888999999998888888888888777776544
No 138
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=88.51 E-value=12 Score=36.78 Aligned_cols=94 Identities=14% Similarity=0.262 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHh--hcCC--CCCCCCCCCCCCccccc-CCCCCccccccccc
Q 022126 146 DKQELQEKFSEKSRQKRKLDEMYDQLRSEYE----SMKRS--AIQP--SNSFYPRNDPDLFSANM-MDNRDPIRKDWSVY 216 (302)
Q Consensus 146 kn~ELq~ky~EKsRq~~qLqelYdkLK~~~e----~~~rs--a~~~--a~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~ 216 (302)
++.+--+.|+---.++++|+.||..|+-+-. .+..- .++. |.--+.. |.+. |.| -|+.. .+.+-
T Consensus 286 ekt~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~~k~~~~~la~--pe~~-~~~~~~~~~----~~~ts 358 (391)
T KOG1850|consen 286 EKTVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVSAKNAMKDLAT--PESK-PCIILDSEK----KLNTS 358 (391)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccchhhhhhhhcC--cccc-ccccccchh----ccCCc
Confidence 3344444555556788899999998864422 11111 1111 1111222 2211 222 12221 22333
Q ss_pred CCCCCCCCCCCcCccccCCCCCCcccCCCCCC
Q 022126 217 SPGTPGPREDIWPARQNSSNSGPFDIATGSPA 248 (302)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (302)
+-.++|+--+|=|--..+-+.||- ++|||.
T Consensus 359 ~~~a~a~~~~gep~~e~s~~~~~~--e~~sa~ 388 (391)
T KOG1850|consen 359 SKRAAASHLEGEPKQESSATEKPA--ETGSAG 388 (391)
T ss_pred hhcccccCCCCCccchhhhccCCC--CCCCcc
Confidence 345588888888988888888985 455654
No 139
>PRK04325 hypothetical protein; Provisional
Probab=88.46 E-value=7.1 Score=30.12 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
...+++|.+...+-.+++.+|+.....|..++..
T Consensus 22 E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 22 EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444333
No 140
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=88.45 E-value=10 Score=32.63 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=10.6
Q ss_pred HHHhcCCChHHHH
Q 022126 63 NMAMAGVSPQILM 75 (302)
Q Consensus 63 t~vL~GlsP~~Im 75 (302)
+.-|.|++-++|+
T Consensus 38 Nr~LrG~~reEVv 50 (135)
T KOG4196|consen 38 NRHLRGLSREEVV 50 (135)
T ss_pred HHHhcCCCHHHHH
Confidence 4468899999988
No 141
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.19 E-value=7.9 Score=43.22 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 141 ESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..|+++.+.|++++..+++++.-+++.|.+++++
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 142
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.05 E-value=0.37 Score=46.55 Aligned_cols=42 Identities=29% Similarity=0.787 Sum_probs=34.5
Q ss_pred CccccCcccccCCcEEecC--CccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTC--GHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~C--GHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+-|++|+..|. +=+-.| ||+-|..|-.+. ...||.|+-++++
T Consensus 49 leCPvC~~~l~--~Pi~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 49 LDCPVCFNPLS--PPIFQCDNGHLACSSCRTKV---SNKCPTCRLPIGN 92 (299)
T ss_pred ccCchhhccCc--ccceecCCCcEehhhhhhhh---cccCCcccccccc
Confidence 46999999996 336777 999999998653 6789999998873
No 143
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=87.98 E-value=12 Score=31.73 Aligned_cols=6 Identities=17% Similarity=-0.230 Sum_probs=1.8
Q ss_pred hhhhhh
Q 022126 84 FYLGQK 89 (302)
Q Consensus 84 Fw~~Q~ 89 (302)
|...+.
T Consensus 21 ~Vd~~~ 26 (158)
T PF03938_consen 21 VVDVDK 26 (158)
T ss_dssp EE-HHH
T ss_pred EeeHHH
Confidence 333333
No 144
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.73 E-value=2.2 Score=43.75 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++.+.+...++|++++++++.|++.+.++.+++++++++...++++|++-.+.++.+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334444445556667777778888888888888888888888888888777777766
No 145
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.54 E-value=0.16 Score=53.74 Aligned_cols=46 Identities=20% Similarity=0.562 Sum_probs=37.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc--C-CCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS--N-DAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~--~-~~~CPvC~~~l~~ 47 (302)
+.|+||..... .++.+.|-|+||..|+...|. + ...||+|+....+
T Consensus 22 lEc~ic~~~~~-~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVK-EPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEee-ccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 46999998876 578999999999999998764 3 6789999966543
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.42 E-value=14 Score=32.30 Aligned_cols=67 Identities=18% Similarity=0.378 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMM-------EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~m-------e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
...|.++|++-+.++.+|+.++..- ...+..+..++..+...+.++.....++.+....++.+.+.+
T Consensus 51 n~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 51 NQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665544322 222333333333444444444444444444444444443333
No 147
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.38 E-value=17 Score=35.68 Aligned_cols=68 Identities=19% Similarity=0.405 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+..+..|.+.|.+.+-+++.+.++.+++..+ ++-..-+.|++..+|=..+++||.| +|++-++.+.++
T Consensus 332 ~~e~qrkEee~rqmFvqrvkekE~elke~Ek---el~~kf~~lkr~h~eEk~kle~~rr---~Leee~~~f~~r 399 (406)
T KOG3859|consen 332 LGELQRKEEEMRQMFVQRVKEKEAELKEAEK---ELHEKFDRLKRLHQEEKKKLEEKRK---QLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3445555555666666666666666655544 2333346666666666677776654 566677776555
No 148
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=87.35 E-value=22 Score=34.08 Aligned_cols=9 Identities=11% Similarity=0.139 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 022126 244 TGSPAKQPV 252 (302)
Q Consensus 244 ~~~~~~~~~ 252 (302)
+|+|-|.+|
T Consensus 237 g~~pltp~a 245 (333)
T KOG1853|consen 237 GDVPLTPDA 245 (333)
T ss_pred CCCCCCchh
Confidence 345555444
No 149
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=87.35 E-value=11 Score=40.87 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=6.4
Q ss_pred hHhhhhhCcCCC
Q 022126 278 TLRNLILSPIKR 289 (302)
Q Consensus 278 ~~~~~~~~~~~~ 289 (302)
+||..|-.=+++
T Consensus 735 ~Lr~~v~~~L~~ 746 (771)
T TIGR01069 735 KLRKGVQELLKN 746 (771)
T ss_pred HHHHHHHHHhcC
Confidence 466655544444
No 150
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.33 E-value=16 Score=30.47 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++-++-+.|...+..++.+.++..+.+.||+.++.|--+....-...|..|..++.
T Consensus 34 eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 34 ELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLL 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666677777777777777777777766655554444555555544
No 151
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.30 E-value=21 Score=39.24 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=11.0
Q ss_pred CCCCCCCccccccC
Q 022126 35 DAACPICDQVLSKS 48 (302)
Q Consensus 35 ~~~CPvC~~~l~~~ 48 (302)
...||+|++++...
T Consensus 457 ~~~CPvCg~~l~~~ 470 (908)
T COG0419 457 GEKCPVCGQELPEE 470 (908)
T ss_pred CCCCCCCCCCCCcH
Confidence 57899999887653
No 152
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=87.24 E-value=8.7 Score=40.59 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.++.++.++.++..-+.++-+++|.+|+.+|+.+
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444555556666666677777777777776654
No 153
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.17 E-value=2.1 Score=40.34 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
|+.++.+++.++.++..++.+++.|++.|+++|..|-|
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777888888999999999999888743
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.02 E-value=15 Score=36.51 Aligned_cols=63 Identities=14% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
...+++...++...++++..+=.-+..+++.+..+..+++..|.+-..++++..+....+-.+
T Consensus 240 ~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 240 KSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444455555555555666666666666666666666666666655554444433
No 155
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.02 E-value=18 Score=37.89 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
..++...+..|+.++..|..+..|..+...++
T Consensus 215 ~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 215 LAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443333333
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.00 E-value=23 Score=38.31 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 161 KRKLDEMYDQLRSEYE 176 (302)
Q Consensus 161 ~~qLqelYdkLK~~~e 176 (302)
++.|+.-.+++|.+.+
T Consensus 648 l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 648 LQDLKASIEQLKKKLD 663 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 157
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.94 E-value=12 Score=37.71 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 151 QEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 151 q~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+..|.+-.|++.-.+++|+.|..+++.++-+
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667778888888999999898877644
No 158
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=86.90 E-value=0.3 Score=34.91 Aligned_cols=43 Identities=26% Similarity=0.684 Sum_probs=19.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh-----cCCCCCCCCccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL-----SNDAACPICDQV 44 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~-----~~~~~CPvC~~~ 44 (302)
|.|++....+..-+=...|.|+-|.+ +..++ .....||+|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 57999888886433367799998754 22222 235689999874
No 159
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.88 E-value=31 Score=33.41 Aligned_cols=76 Identities=18% Similarity=0.368 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 103 QCRQKCEAMQEKFTE---KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 103 ~lreK~e~L~~~l~~---ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.+.+|++..+..+.+ ....+..+|+++.+++..++.|...++++.+.-...+-+=.-+...+.+-|+.++.+.+++
T Consensus 220 ~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 220 LYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555543 3334455666666666666666666666665555555444445555555566666655544
No 160
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=86.86 E-value=35 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 107 KCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 107 K~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
.....+..|.+++++...+.++|+..+..+..|+..+++.+..|.+...+|.
T Consensus 241 Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~ 292 (384)
T PF03148_consen 241 QADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKE 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666655555555666666666666666555554
No 161
>PRK02119 hypothetical protein; Provisional
Probab=86.84 E-value=9.1 Score=29.45 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+|.+...+-.+++..|+.....|+.+
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444
No 162
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.83 E-value=7.8 Score=32.01 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++|.+|..+..-++.-+=..+.++.+|.+.+.+|.-.+++++.-.|.|--+..
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~ 57 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQ 57 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555666666666666666666666666666654443
No 163
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.78 E-value=8.2 Score=43.75 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLD-----EMYDQLRSEYESM 178 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq-----elYdkLK~~~e~~ 178 (302)
...++++.|+++..-|...|+|...+..+|+ +.||.++.-+++.
T Consensus 1264 ~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s 1312 (1758)
T KOG0994|consen 1264 LAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGAFNSTRHAYEQS 1312 (1758)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHH
Confidence 3457888888888888888888887777765 4788888887743
No 164
>PRK09039 hypothetical protein; Validated
Probab=86.70 E-value=9.6 Score=37.37 Aligned_cols=56 Identities=11% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.+.|.....++..++++++.||+.+..|+..+.+-..+....+.-++.|+++++.+
T Consensus 129 k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 129 KQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444555555555555555555555555555555555555555554433
No 165
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.52 E-value=5.8 Score=40.71 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~~e~ 177 (302)
..+.++++.+.+.|.++++.
T Consensus 122 ~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 122 KSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44566788888888888653
No 166
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=86.45 E-value=6.2 Score=34.53 Aligned_cols=17 Identities=41% Similarity=0.433 Sum_probs=7.3
Q ss_pred HHHHHHHhHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFS 155 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~ 155 (302)
..+.|++++.+|+.+|.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 167
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=86.44 E-value=35 Score=34.64 Aligned_cols=34 Identities=29% Similarity=0.495 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
+.....++..+.+..+.|+..+..-+-|++||.+
T Consensus 132 ~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 132 LAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666555544444444433
No 168
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.43 E-value=10 Score=33.86 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.+.+..++.++.++.-|+-.|.--..+.++|+.-++.|..+
T Consensus 139 l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 139 LKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444455555555555555544
No 169
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.35 E-value=7 Score=31.99 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESL--SKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~L--rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
..++....+++.+|.+++.| +++.++|+-...+=+.+...|.+-++.+.+..
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33334444555555555555 55555555555555555555555555554443
No 170
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.26 E-value=4.6 Score=30.55 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
...+++|.+...+-.+++.+|+..+..|..++..+.
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444445555555555556666644443
No 171
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.24 E-value=22 Score=32.80 Aligned_cols=6 Identities=67% Similarity=1.929 Sum_probs=4.6
Q ss_pred CCCCCc
Q 022126 37 ACPICD 42 (302)
Q Consensus 37 ~CPvC~ 42 (302)
.||+|+
T Consensus 1 ~C~iC~ 6 (302)
T PF10186_consen 1 QCPICH 6 (302)
T ss_pred CCCCCC
Confidence 488888
No 172
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=86.11 E-value=0.15 Score=39.30 Aligned_cols=41 Identities=34% Similarity=0.632 Sum_probs=24.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.|+.|..+|.- .. ||.+|..|-..+ .....||-|+.+|..
T Consensus 2 ~~CP~C~~~L~~---~~--~~~~C~~C~~~~-~~~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 2 NTCPKCQQELEW---QG--GHYHCEACQKDY-KKEAFCPDCGQPLEV 42 (70)
T ss_dssp -B-SSS-SBEEE---ET--TEEEETTT--EE-EEEEE-TTT-SB-EE
T ss_pred CcCCCCCCccEE---eC--CEEECccccccc-eecccCCCcccHHHH
Confidence 479999998841 22 999999997754 456789999998853
No 173
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=86.03 E-value=15 Score=28.87 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~EL 150 (302)
..+++..-.|++.+|.++.||
T Consensus 31 e~ki~~Qi~Em~~ir~~v~eL 51 (79)
T PF08581_consen 31 EHKINSQIQEMQQIRQKVYEL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555444
No 174
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.01 E-value=22 Score=30.84 Aligned_cols=59 Identities=15% Similarity=0.393 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+..+..+..+++.+...+..++.++++++.++.+|-..+.++..+...|..+-..+.+
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33455566667777777778888888888888888888888887777777766555443
No 175
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.96 E-value=11 Score=28.95 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
+++|.+...+-.+++..|+.....|+.++..+.
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333433344334444444444444444443333
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.80 E-value=6.6 Score=38.25 Aligned_cols=59 Identities=24% Similarity=0.442 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+.+.+.+..+..+..++..++.+.+...++.++|+.....-.+++..-+.|.+.|..+
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 34555666666777777777777777777777788777777777777777777666544
No 177
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=85.73 E-value=20 Score=30.13 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+++..++.++..+..+....+.|++++.|=-++......++.+++.-.+-||+=
T Consensus 68 ~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~ 122 (132)
T PF10392_consen 68 EELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSV 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777778888877777777777777777777777777653
No 178
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=85.69 E-value=17 Score=34.19 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.+..++.+++.++.+..+++.++..+..+.++|++...+...++.+++....-.+..+
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~ 147 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARL 147 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666655555554444443
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.61 E-value=33 Score=33.08 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=5.4
Q ss_pred HhhhhhCcCCC
Q 022126 279 LRNLILSPIKR 289 (302)
Q Consensus 279 ~~~~~~~~~~~ 289 (302)
|=.+||+|+.+
T Consensus 404 ~~~~~l~~~~~ 414 (423)
T TIGR01843 404 VIEYLLKPITD 414 (423)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 180
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.60 E-value=0.5 Score=40.72 Aligned_cols=31 Identities=16% Similarity=0.636 Sum_probs=25.5
Q ss_pred CccccCcccccC--CcEEecCC------ccccHHHHHhh
Q 022126 1 MRCNACWRELEG--RAISTTCG------HLLCTEDANKI 31 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CG------HiFC~~Ci~~~ 31 (302)
+.|-||...+.+ ..|..+|| |.||.+|+.+|
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 358999999865 56666776 89999999998
No 181
>PRK02224 chromosome segregation protein; Provisional
Probab=85.45 E-value=49 Score=35.81 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=6.6
Q ss_pred ChHHHHHHHHHhhhh
Q 022126 70 SPQILMKSAYRSVMF 84 (302)
Q Consensus 70 sP~~Ime~a~RAi~F 84 (302)
+|....++..+++..
T Consensus 147 ~p~~R~~ii~~l~~l 161 (880)
T PRK02224 147 TPSDRQDMIDDLLQL 161 (880)
T ss_pred CHHHHHHHHHHHhCC
Confidence 444433444444444
No 182
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=85.19 E-value=4.4 Score=41.43 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=74.8
Q ss_pred ccccHHHHHhhhcCCCCCCCCccccccC--CCcccccCCChHHHHHHhcCCChHHHHHHHHH---hhhhhhhhhHHHHHH
Q 022126 21 HLLCTEDANKILSNDAACPICDQVLSKS--LMKPVDINPNDEWVNMAMAGVSPQILMKSAYR---SVMFYLGQKELEMQY 95 (302)
Q Consensus 21 HiFC~~Ci~~~~~~~~~CPvC~~~l~~~--div~~~LnPse~~Kt~vL~GlsP~~Ime~a~R---Ai~Fw~~Q~~qe~~y 95 (302)
-+||..| ....|--|+..+... .+..-.|-|..+- .|-..++|-.++.++-+ ...+|.-|-+..+.|
T Consensus 176 ~v~ceqc------dv~yc~pc~~~~hp~rgplakh~l~~~~~g--rvs~~~s~r~~~~ct~h~~e~~smyc~~ck~pvc~ 247 (699)
T KOG4367|consen 176 TVMCEQC------DVFYCDPCRLRCHPPRGPLAKHRLVPPAQG--RVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCY 247 (699)
T ss_pred hhhHhhC------ceEEechHHhccCCCCCchhhcccCCcccC--ceeeccchhhhhhccCCCCCCceEEEEecCChHHH
Confidence 3555555 344566666665332 2222233333332 25556677777766544 345677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022126 96 KMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE-KSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 96 Q~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E-KsRq~~qLqelYdkLK~~ 174 (302)
|--.-.+...-....|....+-.-.++.++++.|..|..+.+.++-+||.-.+-+|+.-.| ++-=..|...|+|.|.++
T Consensus 248 ~clee~khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~lid~l~~r 327 (699)
T KOG4367|consen 248 QCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRR 327 (699)
T ss_pred HHHHhhcccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 6100000000011223333333334566666666666666666666666666666555444 233345666666666444
Q ss_pred HH
Q 022126 175 YE 176 (302)
Q Consensus 175 ~e 176 (302)
-+
T Consensus 328 k~ 329 (699)
T KOG4367|consen 328 KA 329 (699)
T ss_pred HH
Confidence 44
No 183
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.18 E-value=7.5 Score=41.06 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+.-++.+++.|-++++.|++.+..|++||++.+..|.-++.+|.+...+-.++++.+|..
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 334444555556667777777778888888777777777777777777776666655543
No 184
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=85.16 E-value=21 Score=30.10 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelY 168 (302)
+|...+.+...+|.-+=+||
T Consensus 72 ~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333
No 185
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.01 E-value=22 Score=32.15 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
++.+.+...+++..++.+++..+..|++..+-+..+-+++..+..+++.--+.++..++.++.
T Consensus 118 ~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 118 KIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444445555555555555555555556666777777777777777777665543
No 186
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.96 E-value=31 Score=39.55 Aligned_cols=16 Identities=31% Similarity=0.980 Sum_probs=12.4
Q ss_pred CCCCCCCCccccccCC
Q 022126 34 NDAACPICDQVLSKSL 49 (302)
Q Consensus 34 ~~~~CPvC~~~l~~~d 49 (302)
....||+|.+.|....
T Consensus 676 ~~~~C~LC~R~f~~ee 691 (1311)
T TIGR00606 676 NQSCCPVCQRVFQTEA 691 (1311)
T ss_pred cCCcCCCCCCCCCChh
Confidence 3568999999997643
No 187
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=84.93 E-value=34 Score=33.08 Aligned_cols=67 Identities=22% Similarity=0.357 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQ-------EKFSEKSRQKRKLDEMY-------DQLRSEYESMKR 180 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq-------~ky~EKsRq~~qLqelY-------dkLK~~~e~~~r 180 (302)
...++..+-+....|..||+.-+.|++.++|..+-|| ..|++-..+++||=+.| +-||++++-..|
T Consensus 124 ~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 124 SRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3345555555555566777788888899999888888 35665555555555444 346666664433
Q ss_pred h
Q 022126 181 S 181 (302)
Q Consensus 181 s 181 (302)
|
T Consensus 204 s 204 (338)
T KOG3647|consen 204 S 204 (338)
T ss_pred h
Confidence 3
No 188
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.84 E-value=25 Score=32.62 Aligned_cols=53 Identities=9% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEM 167 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqel 167 (302)
+...+..++.+++.++...+.++..+++++++..+|++..++-..-.+.|..+
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~ 106 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555566666666666666666666555555555443
No 189
>PRK11546 zraP zinc resistance protein; Provisional
Probab=84.71 E-value=11 Score=32.85 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 88 QKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTA 125 (302)
Q Consensus 88 Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~ 125 (302)
|.+.|.+-+...|.+.+..+...|-+++-.|-.|+++.
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555444433455455544444444444444444443
No 190
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=84.70 E-value=18 Score=30.99 Aligned_cols=18 Identities=6% Similarity=0.159 Sum_probs=14.0
Q ss_pred HhcCCChHHHHHHHHHhh
Q 022126 65 AMAGVSPQILMKSAYRSV 82 (302)
Q Consensus 65 vL~GlsP~~Ime~a~RAi 82 (302)
++.++++.-++..|+|-.
T Consensus 20 ~leklds~~~l~Lc~R~Q 37 (131)
T PF10158_consen 20 VLEKLDSRPVLRLCSRYQ 37 (131)
T ss_pred HHHccChHHHHHHHHHHH
Confidence 788888888887777653
No 191
>PRK04406 hypothetical protein; Provisional
Probab=84.62 E-value=12 Score=29.06 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDK 147 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn 147 (302)
++..+..|..++.-++.-++.|.+.+
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v 34 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDAL 34 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443333
No 192
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=0.61 Score=38.68 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=26.4
Q ss_pred EecCCccccHHHHHhhhcCCCCCCCCccc
Q 022126 16 STTCGHLLCTEDANKILSNDAACPICDQV 44 (302)
Q Consensus 16 vT~CGHiFC~~Ci~~~~~~~~~CPvC~~~ 44 (302)
=-.|.|.|=..||.+|++....||.|.+.
T Consensus 78 WG~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 78 WGVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 45799999999999999999999999875
No 193
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.47 E-value=28 Score=32.48 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
+..+..|+..+.+.+.+....++....+-.+|..|.+-.|.++.++
T Consensus 59 ~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 59 NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555567788888888888883
No 194
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.46 E-value=18 Score=39.38 Aligned_cols=11 Identities=27% Similarity=0.277 Sum_probs=6.4
Q ss_pred hHhhhhhCcCC
Q 022126 278 TLRNLILSPIK 288 (302)
Q Consensus 278 ~~~~~~~~~~~ 288 (302)
.||+.|..=++
T Consensus 746 ~Lr~~v~~~L~ 756 (782)
T PRK00409 746 KLRKGVQEFLK 756 (782)
T ss_pred HHHHHHHHHHc
Confidence 66666655444
No 195
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=84.44 E-value=7.7 Score=34.93 Aligned_cols=51 Identities=25% Similarity=0.458 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+-.+.|.+|+ ++..+++|.|+.....|+..+.+-+||+..|+..=.+|-+
T Consensus 115 ~eEr~Ry~rLQ---qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 115 SEERARYQRLQ---QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 34455566653 4788899999999999999999999998888866555543
No 196
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=0.36 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=26.3
Q ss_pred EEecCCccccHHHHHhhhc---CCCCCCCCccccc
Q 022126 15 ISTTCGHLLCTEDANKILS---NDAACPICDQVLS 46 (302)
Q Consensus 15 vvT~CGHiFC~~Ci~~~~~---~~~~CPvC~~~l~ 46 (302)
|.-.|.|.|=..||.+|+. +...||.|+....
T Consensus 47 v~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 47 VWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 3557999999999999975 3678999998654
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.33 E-value=19 Score=38.45 Aligned_cols=58 Identities=10% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQEL---QEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~EL---q~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
+++.++.+.+.++.+++.++++..++ ...|.+-.|+..-.+++|+.|-.++++++-..
T Consensus 346 ~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 346 QADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33434444444444555554444333 55677788888888999999999988776554
No 198
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.30 E-value=31 Score=37.04 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 151 QEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 151 q~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+..|.+-.|+..-.+++|+.|-.+.+.+.-+..
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a 401 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS 401 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666778888888999998888777766543
No 199
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=84.16 E-value=26 Score=30.15 Aligned_cols=50 Identities=32% Similarity=0.557 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEK-------SRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK-------sRq~~qLqelYdkLK~~~e 176 (302)
+.|.++++.|+.+++...+...+..+++++- .|+.+.|+.--+.+-.+|+
T Consensus 76 E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~e 132 (143)
T PF12718_consen 76 EQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYE 132 (143)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 3466677778888888888777777777653 3454444444444444443
No 200
>PHA01750 hypothetical protein
Probab=83.72 E-value=12 Score=28.75 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
++++++|..++++....++++.+++.|++++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4445555444444444444444444444443
No 201
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=83.63 E-value=16 Score=27.35 Aligned_cols=35 Identities=20% Similarity=0.461 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
..+..|..+..++.|-..+.+.|+.-.+.|+.+++
T Consensus 22 kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 22 KVKSANLAFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433
No 202
>PRK12704 phosphodiesterase; Provisional
Probab=83.63 E-value=59 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=8.8
Q ss_pred cCCCCCcccccccccC
Q 022126 202 MMDNRDPIRKDWSVYS 217 (302)
Q Consensus 202 ~~~~~~~~r~~~~~~~ 217 (302)
-|-|+=+-|-|.+-..
T Consensus 220 ~mkgriigreGrnir~ 235 (520)
T PRK12704 220 EMKGRIIGREGRNIRA 235 (520)
T ss_pred hhhcceeCCCcchHHH
Confidence 4455555666665444
No 203
>PRK00846 hypothetical protein; Provisional
Probab=83.60 E-value=17 Score=28.55 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
..-+++|.+...+--++..+|+.....|+.++..+..+.
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~ 64 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 64 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 334444444455555556666666667777765555444
No 204
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=83.52 E-value=30 Score=33.54 Aligned_cols=18 Identities=11% Similarity=0.054 Sum_probs=11.3
Q ss_pred hcCCChHHHHHHHHHhhh
Q 022126 66 MAGVSPQILMKSAYRSVM 83 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~ 83 (302)
..+.+|+...+++...+.
T Consensus 137 ~~~~dP~~A~~ian~l~~ 154 (362)
T TIGR01010 137 VTAFDAEEAQKINQRLLK 154 (362)
T ss_pred EEecCHHHHHHHHHHHHH
Confidence 447788876666555544
No 205
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=83.52 E-value=21 Score=35.90 Aligned_cols=57 Identities=19% Similarity=0.234 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
..+.++.+.+.........++...++++..++..++.++..+.+..++|+.+|.+-+
T Consensus 70 ~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 70 DALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344544445554444555556666666666677777777777777777777776633
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.34 E-value=40 Score=34.71 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=15.3
Q ss_pred EecCCccccHH----HHHhhhcCCCCC
Q 022126 16 STTCGHLLCTE----DANKILSNDAAC 38 (302)
Q Consensus 16 vT~CGHiFC~~----Ci~~~~~~~~~C 38 (302)
-..|||+-|-. .+.++|+....|
T Consensus 243 cliCg~vgcgrY~eghA~rHweet~H~ 269 (493)
T KOG0804|consen 243 CLICGNVGCGRYKEGHARRHWEETGHC 269 (493)
T ss_pred EEEccceecccccchhHHHHHHhhcce
Confidence 45699999975 566677544333
No 207
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.34 E-value=34 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=7.6
Q ss_pred CCChHHHHHHHHHh
Q 022126 68 GVSPQILMKSAYRS 81 (302)
Q Consensus 68 GlsP~~Ime~a~RA 81 (302)
-.+|+.+++.+-|-
T Consensus 21 ~EDP~~~l~q~ird 34 (221)
T PF04012_consen 21 AEDPEKMLEQAIRD 34 (221)
T ss_pred hcCHHHHHHHHHHH
Confidence 34677666544443
No 208
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=83.33 E-value=6.7 Score=30.74 Aligned_cols=54 Identities=20% Similarity=0.323 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIES---LSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~---LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+++++...+++|++.+.+-++. +.+..+|-.+.+++...+.++..++..++|.+
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555444443333 56666666666666666777777777777766
No 209
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.31 E-value=21 Score=39.08 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky 154 (302)
.-|-.|.++|+..++|+|+++
T Consensus 482 e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 482 ELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666665
No 210
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=83.25 E-value=49 Score=36.18 Aligned_cols=15 Identities=7% Similarity=-0.075 Sum_probs=8.0
Q ss_pred CCChHHHHHHHHHhh
Q 022126 68 GVSPQILMKSAYRSV 82 (302)
Q Consensus 68 GlsP~~Ime~a~RAi 82 (302)
..+|...++..-.+.
T Consensus 151 ~~~~~~~~~~~~~~~ 165 (1179)
T TIGR02168 151 EAKPEERRAIFEEAA 165 (1179)
T ss_pred cCCHHHHHHHHHHHc
Confidence 447776554444444
No 211
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.23 E-value=0.52 Score=29.51 Aligned_cols=10 Identities=30% Similarity=0.740 Sum_probs=6.0
Q ss_pred ccccCccccc
Q 022126 2 RCNACWRELE 11 (302)
Q Consensus 2 ~CNiC~~~l~ 11 (302)
.|+.|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 3666666654
No 212
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.21 E-value=11 Score=36.48 Aligned_cols=66 Identities=14% Similarity=0.287 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.+.+|++--..+.=+++.|+.++.+|+..+-.++|++.|....++--.+.+..|+.-.+.||.++.
T Consensus 99 ~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 99 SNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666667788888889999888888888888777776666677777777777887754
No 213
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.21 E-value=17 Score=28.27 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+.+++..+.--.+-++||...+.|--.-..+++...+.|-.++..+..++.
T Consensus 10 i~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~ 60 (72)
T COG2900 10 IIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAI 60 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 333333333334556677777776666666666655556555444444443
No 214
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=83.11 E-value=33 Score=36.25 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
.+.+++..+.+++.++..++.+++.+++++.++.+
T Consensus 429 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 429 ELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444433
No 215
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.98 E-value=11 Score=40.92 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYD 169 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYd 169 (302)
.|..++.+.-...+.|+.|.++|-+.+++++.+|..|.+.|.||..++.+....|+
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d 493 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFD 493 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555556666777788888888888889999999999998887766555554
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.89 E-value=0.73 Score=49.98 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=33.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQV 44 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~ 44 (302)
.|..|.-.|.-..|-=.|||+|-..|+. .+...||.|...
T Consensus 842 kCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 842 KCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eecccCCccccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5999999886556777899999999988 467899999873
No 217
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=82.82 E-value=43 Score=31.55 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
...++.+..++..++...+.|.+.+.+|...|
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 33333333333344444444444444443333
No 218
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.80 E-value=20 Score=33.73 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE--KSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E--KsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.+.+.+.+..++.++..++.++..++.+++.++.+...+.+++.. ..|++..|+.-.+.++++..+++.
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~ 110 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLED 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777777777777777777733 346777777777777777665554
No 219
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=82.68 E-value=20 Score=34.63 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=9.3
Q ss_pred ccCCCCCcccccccccCC
Q 022126 201 NMMDNRDPIRKDWSVYSP 218 (302)
Q Consensus 201 ~~~~~~~~~r~~~~~~~~ 218 (302)
+|+++.-.|.+|-+.+.|
T Consensus 182 ~i~eD~~~i~k~~s~~~P 199 (291)
T KOG4466|consen 182 NILEDLRTINKDESAVQP 199 (291)
T ss_pred hHHHHHhhhccccCCCCC
Confidence 455555555555555443
No 220
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=82.66 E-value=31 Score=29.79 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 022126 161 KRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 161 ~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+..+.--.|.+|.+|+++-.++.
T Consensus 97 ~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 97 NSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334445567777777766655
No 221
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=82.65 E-value=0.23 Score=30.11 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=10.9
Q ss_pred cHHHHHhhhcCCCCCCCCcccc
Q 022126 24 CTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 24 C~~Ci~~~~~~~~~CPvC~~~l 45 (302)
|..|....-.....||.|+++|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 3444433333455566666643
No 222
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.60 E-value=41 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~q 163 (302)
+.+++|++.||+...--|+.|.||--||++
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~ 285 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRA 285 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888888777766643
No 223
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.48 E-value=38 Score=30.69 Aligned_cols=100 Identities=15% Similarity=0.257 Sum_probs=52.4
Q ss_pred hcCCChHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 66 MAGVSPQILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEK---LEQVHTAYQKMAKRCQMMEQEIES 142 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~k---i~e~~s~~~kl~~kl~~me~E~e~ 142 (302)
..|++...+.....+-+.+-..|...-- ..+.+++++.++ ..+++..+.+++.++..++.+...
T Consensus 83 ~~GFnV~~l~~RL~kLL~lk~~~~~~~e-------------~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~ 149 (190)
T PF05266_consen 83 EHGFNVKFLRSRLNKLLSLKDDQEKLLE-------------ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAK 149 (190)
T ss_pred HcCCccHHHHHHHHHHHHHHHhHHHHHH-------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777776555555544444433211 001122222222 334555556666666666666566
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 143 LSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 143 LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
++.++++.......=.-...++.+-...++.++..+
T Consensus 150 ~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 150 LKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555555444444445566666666777776655
No 224
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=82.47 E-value=33 Score=31.57 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=26.2
Q ss_pred hcCCChHHHHHHHHHhhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 66 MAGVSPQILMKSAYRSVMFYLGQKELE-MQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKM 129 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~Fw~~Q~~qe-~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl 129 (302)
-+|+.|.++...+..+-.|-+.|..+. ..- +..+.++-++....++++....++..-+.++
T Consensus 83 ~SgV~p~~lfpS~e~~rE~~~~~~e~~e~l~---km~EslRi~~~~e~~k~~~Re~~iak~m~K~ 144 (225)
T KOG4848|consen 83 KSGVPPEELFPSAEEIREFNNAKKEYKELLK---KMRESLRILYTKEPEKFTFREAEIAKNMKKY 144 (225)
T ss_pred ccCCChhhhCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 455666655555554444444444321 100 1122333333334445555555544444443
No 225
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.45 E-value=44 Score=31.45 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK 161 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~ 161 (302)
.+.+.+...-.+...+.+.+.++|.|++.+|-|.++|-++.+=+
T Consensus 80 L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiI 123 (246)
T KOG4657|consen 80 LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEII 123 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 44444444445555677788899999999999998888665543
No 226
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.38 E-value=54 Score=32.40 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+..++..++.+..+|...|.++.-+...++.-.+.|+.+
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 4555556666666666666666555555544444444444
No 227
>PRK11519 tyrosine kinase; Provisional
Probab=82.38 E-value=45 Score=35.73 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 152 EKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 152 ~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
..|.+-.|+..-.+++|+.|-.+++.++-+.
T Consensus 370 ~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~ 400 (719)
T PRK11519 370 QEIVRLTRDVESGQQVYMQLLNKQQELKITE 400 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 4455666777778889999888888776554
No 228
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.24 E-value=42 Score=31.06 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=9.8
Q ss_pred CcccccccccCCCC
Q 022126 207 DPIRKDWSVYSPGT 220 (302)
Q Consensus 207 ~~~r~~~~~~~~~~ 220 (302)
+.+|-|..++..-|
T Consensus 185 ~~LrlGr~~l~~~t 198 (251)
T PF11932_consen 185 DFLRLGRVALYYQT 198 (251)
T ss_pred EEEeecchhheeEC
Confidence 45788888776555
No 229
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=82.11 E-value=5.3 Score=32.75 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~ELq 151 (302)
+.+++.++++.+.|+.+++.|+
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444445555555544444
No 230
>PRK01156 chromosome segregation protein; Provisional
Probab=81.93 E-value=63 Score=35.20 Aligned_cols=18 Identities=11% Similarity=-0.136 Sum_probs=7.3
Q ss_pred hHHHHHHHHHhhhhhhhh
Q 022126 71 PQILMKSAYRSVMFYLGQ 88 (302)
Q Consensus 71 P~~Ime~a~RAi~Fw~~Q 88 (302)
|+.-.+...+++.+..|+
T Consensus 148 ~~~r~~~ld~~~~~~~~~ 165 (895)
T PRK01156 148 PAQRKKILDEILEINSLE 165 (895)
T ss_pred HHHHHHHHHHHhChHHHH
Confidence 443333344444444443
No 231
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.82 E-value=64 Score=35.82 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+++++..-..++++++|.++|.+--.++..|-.-|+....+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQ 453 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQ 453 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444433333333333333333333
No 232
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.71 E-value=12 Score=35.26 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQ 112 (302)
Q Consensus 100 l~~~lreK~e~L~ 112 (302)
....+++|++.++
T Consensus 136 ~~ee~kekl~E~~ 148 (290)
T COG4026 136 DYEELKEKLEELQ 148 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555544443
No 233
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.67 E-value=21 Score=37.60 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~k 153 (302)
.+...+.|++.+++++.+|+..
T Consensus 302 Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 302 EIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 234
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.63 E-value=79 Score=34.19 Aligned_cols=83 Identities=17% Similarity=0.338 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCCCCC---
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ-------LRSEYESMKRSAIQPSNSFY--- 190 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk-------LK~~~e~~~rsa~~~a~~~~--- 190 (302)
.+-+++..|+.|-..||..+....|-+.||=.+|-|-.||+.-++....+ ||.++.++++ +-|..++-
T Consensus 591 ~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a--v~p~~~~~~~~ 668 (697)
T PF09726_consen 591 VLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA--VMPSDSYCSAI 668 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccccccCC
Confidence 34455556666667777777777777778878888877777666655544 4555444433 34554433
Q ss_pred CCCCCCCcccccCCCC
Q 022126 191 PRNDPDLFSANMMDNR 206 (302)
Q Consensus 191 ~~~~~~~~~~~~~~~~ 206 (302)
.-+.|+ ++..+|+..
T Consensus 669 ~~~~~~-~~~~~~~~~ 683 (697)
T PF09726_consen 669 TPPTPH-YSSKFLNSS 683 (697)
T ss_pred CCCCcc-chhhhccCC
Confidence 122333 445555543
No 235
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.62 E-value=36 Score=30.64 Aligned_cols=18 Identities=6% Similarity=0.025 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhhhhhHHH
Q 022126 75 MKSAYRSVMFYLGQKELE 92 (302)
Q Consensus 75 me~a~RAi~Fw~~Q~~qe 92 (302)
.|-++-+.-||++=...-
T Consensus 47 ~EKiGssn~YWsFps~~~ 64 (188)
T PF03962_consen 47 VEKIGSSNYYWSFPSQAK 64 (188)
T ss_pred hhhccCeeEEEecChHHH
Confidence 355666777998865543
No 236
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.47 E-value=8.9 Score=28.57 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~EL 150 (302)
++.+++.++.+.+.|+++++.|
T Consensus 29 l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 29 LQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444443
No 237
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=81.26 E-value=13 Score=36.01 Aligned_cols=40 Identities=28% Similarity=0.395 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
+.+++..|++.|.++|+||++...+-.|+++-|..++-..
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888999999999988888888888887666544
No 238
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.18 E-value=40 Score=36.86 Aligned_cols=61 Identities=16% Similarity=0.329 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+..++...++.+.+....+..++.|...+.-++.+|.+.|.-+.+++..|+.-|+.|...
T Consensus 347 ~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~ 407 (775)
T PF10174_consen 347 ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQ 407 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888899999999999999999999999999998888777665433
No 239
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=81.14 E-value=43 Score=33.18 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
.+.+.|+..|-||.+++.+-..||....+.||++
T Consensus 130 ~~n~klre~NieL~eKlkeL~eQy~~re~hidk~ 163 (391)
T KOG1850|consen 130 SKNDKLREDNIELSEKLKELGEQYEEREKHIDKQ 163 (391)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666566554
No 240
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.05 E-value=6.9 Score=27.50 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
++..|+-|+.....+..+.+.|.++|++|+....
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666666666666666654443
No 241
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=81.04 E-value=24 Score=36.70 Aligned_cols=65 Identities=18% Similarity=0.378 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDK-------QELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn-------~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
...|..+|.++-.+++.+..|...+..|++.|.++. +-+.+.+++...++..||+-....|+.||
T Consensus 415 k~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE 486 (518)
T PF10212_consen 415 KSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYE 486 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444444444444444434333333333333322 23334444444444455544444444444
No 242
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=81.03 E-value=30 Score=35.61 Aligned_cols=45 Identities=20% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEM 167 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqel 167 (302)
+..++.|+.++..-.+|...|+||++||...=+.=--|++|||.+
T Consensus 271 keYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 271 KEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred hhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 334555666665555555555555555533322222344444433
No 243
>PRK09039 hypothetical protein; Validated
Probab=80.99 E-value=33 Score=33.68 Aligned_cols=55 Identities=5% Similarity=0.077 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
.+.+.+.++..|+.++..++.++..++-.+.++.+..+|...++..|+...+...
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666666666666666666666655555553
No 244
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.93 E-value=34 Score=36.01 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHhhcCCCC
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQ---MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY-DQLRSEYE-SMKRSAIQPSN 187 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~---~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY-dkLK~~~e-~~~rsa~~~a~ 187 (302)
++|.-.+.++=...++++.+++ ..+..++.|+++..+|..+|.+.++++.+...-| ..|...+. .++.-++.-|.
T Consensus 314 RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~~eL~~L~Me~a~ 393 (557)
T COG0497 314 RKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELKALAMEKAR 393 (557)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 3333333333333444444433 4456678889999999999988888876665544 33444433 35554553332
Q ss_pred CCCCCCCCCCcccccCCCCCcccccccccCCCCCCCCCC
Q 022126 188 SFYPRNDPDLFSANMMDNRDPIRKDWSVYSPGTPGPRED 226 (302)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 226 (302)
|.-.=.|.-+.|+ -+|-|.|-+..+++.|..|+|=..
T Consensus 394 -F~ve~~~~~~~~t-~~G~d~VeF~istNpG~~~~PL~K 430 (557)
T COG0497 394 -FTVELKPLEESPT-ADGADKVEFLISTNPGEPLKPLAK 430 (557)
T ss_pred -EEEEeccCCCCCC-cCCcceEEEEEeCCCCCCCccHHh
Confidence 2111111111122 278888999988884444666443
No 245
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.54 E-value=40 Score=31.08 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+..|..++.+.-..+..-.|...+|+.-.+.|...
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~e 212 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDE 212 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444433
No 246
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=80.47 E-value=49 Score=32.72 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 151 QEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 151 q~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
...|.||..|++.|+.+.+.++..-...
T Consensus 186 ~~vLNeKK~KIR~lq~~L~~~~~~~~~~ 213 (342)
T PF06632_consen 186 VLVLNEKKAKIRELQRLLASAKEEEKSP 213 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhccccch
Confidence 3447899999999999999988754433
No 247
>PRK03918 chromosome segregation protein; Provisional
Probab=80.40 E-value=51 Score=35.55 Aligned_cols=14 Identities=29% Similarity=0.973 Sum_probs=11.5
Q ss_pred CCCCCCCccccccC
Q 022126 35 DAACPICDQVLSKS 48 (302)
Q Consensus 35 ~~~CPvC~~~l~~~ 48 (302)
...||+|+.+|...
T Consensus 435 ~~~Cp~c~~~L~~~ 448 (880)
T PRK03918 435 KGKCPVCGRELTEE 448 (880)
T ss_pred CCCCCCCCCcCCch
Confidence 46899999999764
No 248
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=80.33 E-value=21 Score=32.90 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHhhcCCCC
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLRSEYE--S-MKRSAIQPSN 187 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK~~~e--~-~~rsa~~~a~ 187 (302)
...|++.++||.-++..|+.-.-+...+|- . +|-.|+++|+
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa 102 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAA 102 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567999999999999999999999988873 3 3445555443
No 249
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=49 Score=35.02 Aligned_cols=47 Identities=4% Similarity=0.058 Sum_probs=24.2
Q ss_pred hcCCChHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 66 MAGVSPQILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFT 116 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~ 116 (302)
++..+|.+-.++..+++..+-. +++.|+. .+-..++.....++.+.+
T Consensus 552 ~SsP~~~E~~~lL~~a~~vfrE---qYi~~~d-lV~~e~qrH~~~l~~~k~ 598 (741)
T KOG4460|consen 552 SSAPPPEECLQLLSRATQVFRE---QYILKQD-LVKEEIQRHVKLLCDQKK 598 (741)
T ss_pred ccCCCcHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3445566667777788765443 3455553 333344444344443333
No 250
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=80.17 E-value=48 Score=30.98 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQELQEKFS----------EKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~----------EKsRq~~qLqelYdkLK~~~e 176 (302)
++++.++......++-+.-+++..+...... ++.++..+++...++.+.++.
T Consensus 132 eL~k~kK~Y~~~~~ea~~A~~K~~~ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k~k~~ 193 (241)
T cd07656 132 ELQTAMKTYHTYHAESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYS 193 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555555555544443 233444456666666666654
No 251
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=80.13 E-value=14 Score=32.19 Aligned_cols=40 Identities=35% Similarity=0.620 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSE--------KSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~E--------KsRq~~qLqelYdkLK~~ 174 (302)
+|..+++.|+.++.+|..++.. -..+..++...|.+++..
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~ 160 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKE 160 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554442 123445566666555544
No 252
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=80.10 E-value=14 Score=39.14 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
|-++++++|.++..|++++++++.+-+.+..-|+...+...+
T Consensus 101 krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH
Confidence 556677777777777777776666555555555444444333
No 253
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=80.06 E-value=15 Score=37.68 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=44.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVD 54 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~ 54 (302)
|.|.|-.+......|...-||+|=+.-|.++......||+-+.+|+..++|++.
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik 54 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIK 54 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeecc
Confidence 678888876654344455899999999999999999999999999998887764
No 254
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=80.06 E-value=83 Score=35.72 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
.++...+.+++.++.+.+|+.+.+...
T Consensus 260 ~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 260 EELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 255
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=79.97 E-value=13 Score=38.10 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=19.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
....||+|..||.+.|.-.+++.+.+
T Consensus 313 ~~~dLR~k~~el~~s~D~~sKkI~~l 338 (505)
T KOG1842|consen 313 HAKDLRKKFLELCESIDGTSKKIANL 338 (505)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778899999988887766665544
No 256
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=79.92 E-value=27 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
..|+.++.+--++++.++.++.+|+. ....++.+|+|.-
T Consensus 28 ~e~e~ki~~Qi~Em~~ir~~v~eLE~-------~h~kmK~~YEeEI 66 (79)
T PF08581_consen 28 DEYEHKINSQIQEMQQIRQKVYELEQ-------AHRKMKQQYEEEI 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444444444444444444555444 4444445565543
No 257
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=79.85 E-value=16 Score=32.50 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYD 169 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYd 169 (302)
+.+++.|++++++|.+.+..-...|+-|-..+|
T Consensus 117 ~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 117 QKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 258
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.71 E-value=34 Score=35.66 Aligned_cols=7 Identities=0% Similarity=0.140 Sum_probs=3.0
Q ss_pred hcCCChH
Q 022126 66 MAGVSPQ 72 (302)
Q Consensus 66 L~GlsP~ 72 (302)
+.++..+
T Consensus 272 l~~l~l~ 278 (569)
T PRK04778 272 LEELDLD 278 (569)
T ss_pred HHhcChH
Confidence 3444444
No 259
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=79.69 E-value=1.8 Score=34.09 Aligned_cols=46 Identities=17% Similarity=0.515 Sum_probs=20.4
Q ss_pred ccccCccccc----CCcE--EecCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 2 RCNACWRELE----GRAI--STTCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~----~~~v--vT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
.|.||...+. +.++ ...|+--.|..|..-..+ ....||.|++....
T Consensus 11 iCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 11 ICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred ccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 5999998763 3444 345888889999987655 47789999998764
No 260
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.62 E-value=26 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.++.++..+....+|+..+..-.++...|.+-++.|-.++..+
T Consensus 18 ~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 18 SYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888888888888888888888888888886543
No 261
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=79.60 E-value=59 Score=32.11 Aligned_cols=63 Identities=30% Similarity=0.499 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC-CCcccccCCCCCcccccccc-c--CCCCCCCCCCCcCccccCCCCCC
Q 022126 164 LDEMYDQLRSEYESMKRSAIQPSNSFYPRNDP-DLFSANMMDNRDPIRKDWSV-Y--SPGTPGPREDIWPARQNSSNSGP 239 (302)
Q Consensus 164 LqelYdkLK~~~e~~~rsa~~~a~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (302)
|++|..+|.++ ++....+|.-.+-.+..+ ..|+|+ .+.+ .+++ + +..|| | |+|||
T Consensus 228 L~~l~~~l~~r---~r~a~~~prrey~p~~~~an~f~p~----~~p~--~~~g~~s~T~~t~----------~--~ass~ 286 (366)
T KOG1118|consen 228 LQELQMKLFSR---IRDASSQPRREYVPRSVLANEFAPS----GPPI--QLNGKLSKTTSTP----------Q--SASSP 286 (366)
T ss_pred HHHHHHHHhhh---hhhhhcCchhhcCCcccccccCCCC----CCcc--ccCCCCCcCccCc----------c--ccCCc
Confidence 45555556555 666666787766665533 223322 2222 2223 2 24444 2 78889
Q ss_pred cccCCCCC
Q 022126 240 FDIATGSP 247 (302)
Q Consensus 240 ~~~~~~~~ 247 (302)
|.+|.-+|
T Consensus 287 ~~is~~p~ 294 (366)
T KOG1118|consen 287 SNISPKPP 294 (366)
T ss_pred ccCCCCCC
Confidence 88885444
No 262
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=79.53 E-value=16 Score=36.73 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=18.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
...+.|.+.+.+...++.+|++.+..|+.+++..
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555556666666666666664433
No 263
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.49 E-value=36 Score=28.59 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
..+...+..+......+..++..+..+++...+...+.+++|+.---++...-+....||.++..++
T Consensus 6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~ 72 (132)
T PF07926_consen 6 SSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQ 72 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 264
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=79.46 E-value=21 Score=38.08 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
..+..++...+.++..|+..++.++...+...+.|++.|.+-+|
T Consensus 370 ~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 370 RVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555666666777777777777777777777765443
No 265
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=78.79 E-value=47 Score=32.17 Aligned_cols=58 Identities=19% Similarity=0.378 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
...|..+...+..+..|......|.+++..+..+++.-..-+-.+.+-+..+..+++.
T Consensus 233 ~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~ 290 (309)
T PF09728_consen 233 NKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEK 290 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445555555555555555555554444445555444444444443
No 266
>smart00338 BRLZ basic region leucin zipper.
Probab=78.70 E-value=15 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhHHHH
Q 022126 136 MEQEIESLSKDKQEL 150 (302)
Q Consensus 136 me~E~e~LrKkn~EL 150 (302)
|+.+.+.|..+|.+|
T Consensus 31 Le~~~~~L~~en~~L 45 (65)
T smart00338 31 LERKVEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 267
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.66 E-value=16 Score=29.43 Aligned_cols=41 Identities=12% Similarity=0.401 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
..+.+++.+++.+++.+...+..+..+++..+.+.++|-+.
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777777777777777777777776554
No 268
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=78.39 E-value=21 Score=30.42 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+...++++-.+++.+|..-+=+|-.+.+
T Consensus 69 ~~~~rl~~~r~r~~~L~hR~l~v~~~~e 96 (141)
T PF13874_consen 69 ETSARLEEARRRHQELSHRLLRVLRKQE 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444433334433333
No 269
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.37 E-value=1 Score=44.82 Aligned_cols=45 Identities=27% Similarity=0.660 Sum_probs=30.6
Q ss_pred ccccCcccc-c--CCcEEecCCccccHHHHHhhhc------CCCCCCC--Cccccc
Q 022126 2 RCNACWREL-E--GRAISTTCGHLLCTEDANKILS------NDAACPI--CDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l-~--~~~vvT~CGHiFC~~Ci~~~~~------~~~~CPv--C~~~l~ 46 (302)
.|.+|.... . ....+..|||-||..|..++++ ....||. |...++
T Consensus 148 ~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~ 203 (384)
T KOG1812|consen 148 ECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLT 203 (384)
T ss_pred cCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCC
Confidence 488898433 2 2344788999999999999876 2455654 554443
No 270
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=78.33 E-value=24 Score=35.92 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 022126 101 VAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY-ESMK 179 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~-e~~~ 179 (302)
.++.+..++.+++ ++.+...+.++|+..+.+++.++..++..+-+.+..+.+..+++..+....++|.-+- ++-.
T Consensus 40 l~q~q~ei~~~~~----~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~ 115 (420)
T COG4942 40 LKQIQKEIAALEK----KIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRR 115 (420)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhcCCCCCC-CCCCCC
Q 022126 180 RSAIQPSNSF-YPRNDP 195 (302)
Q Consensus 180 rsa~~~a~~~-~~~~~~ 195 (302)
+-+..-++.+ .++++|
T Consensus 116 ~La~~L~A~~r~g~~p~ 132 (420)
T COG4942 116 RLAEQLAALQRSGRNPP 132 (420)
T ss_pred HHHHHHHHHHhccCCCC
No 271
>PRK14127 cell division protein GpsB; Provisional
Probab=78.30 E-value=11 Score=31.31 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
+..++..|+.+++.|+.++.|++...
T Consensus 42 l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 42 FQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555555555555443
No 272
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=78.22 E-value=62 Score=31.98 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 153 KFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 153 ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.|.+=.|++.-.+++|+.|-.+++.++-.
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~e~~l~ 371 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYTQTRIE 371 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777777766543
No 273
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=77.98 E-value=26 Score=30.08 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
+..|+.|+ +..-.||+++.+|+..-+.++++++..+
T Consensus 106 i~~L~~E~---~~~~~el~~~v~e~e~ll~~v~~~i~~i 141 (144)
T PF11221_consen 106 IKELEEEN---EEAEEELQEAVKEAEELLKQVQELIREI 141 (144)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455333 3333456666666666666666666544
No 274
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.91 E-value=1.2 Score=42.21 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=24.5
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhh
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKI 31 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~ 31 (302)
|..|.++.. +||+|.-||+||.+||...
T Consensus 46 CsLtLqPc~-dPvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 46 CSLTLQPCR-DPVITPDGYLFDREAILEY 73 (303)
T ss_pred eeeeccccc-CCccCCCCeeeeHHHHHHH
Confidence 567888885 6999999999999999886
No 275
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.71 E-value=10 Score=30.58 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
..++..+..++..++.+++.+.++..+|.+.+.+...++++++
T Consensus 62 ~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 62 EEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555555555555555555554443
No 276
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.56 E-value=19 Score=37.16 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 160 QKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 160 q~~qLqelYdkLK~~~e~~~ 179 (302)
+.++|++-..+|+..+.++.
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 277
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.31 E-value=16 Score=27.02 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQ 160 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq 160 (302)
++.++..+++.+..++..++++..+++.+.+.+.+|-..|+--+++
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~ 50 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQ 50 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3345555566666666666667777777777777777777765554
No 278
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=77.27 E-value=44 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
+..+....+++..+.+||+++|.|--..+...++-.+.
T Consensus 263 Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 263 LQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666777777777777777755544444444433
No 279
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=77.20 E-value=28 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
...+.|..+..+|.+.++.|+.|+-+|
T Consensus 50 ~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 50 RKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777877888777766554
No 280
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=77.13 E-value=54 Score=35.18 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFS---EKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~---EKsRq~~qLqelYdkLK~~~e~ 177 (302)
+.+..+|+++..++...+. ++.+++.+|+.-++..+.-|+.
T Consensus 345 ~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 345 LEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555444443332 2344444444444444555543
No 281
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=77.00 E-value=75 Score=30.90 Aligned_cols=59 Identities=25% Similarity=0.418 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++.++..+.+..+.++..+-.+.+.++++-.|+.++|.+...+...+.+-+..++..+.
T Consensus 180 ki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 180 KIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333334444444555666677888888888888888777777777766666665554
No 282
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=76.96 E-value=54 Score=32.41 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=36.9
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 79 YRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFT-EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 79 ~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~-~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
.-+..+|-++..+....+. . ...+.+....+..... ....++....++.+..+..++.+++.++....+|+..+.+
T Consensus 42 alg~~~~~~~~~q~~~~~~-~-~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~ 118 (372)
T PF04375_consen 42 ALGAGGWYWQQQQLQQLQQ-Q-LQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAA 118 (372)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677776555443332 1 1233333333333333 3333333334444444556666666666666666665543
No 283
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=76.87 E-value=38 Score=36.08 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
...++..+...|..++.|...+...||++|..|
T Consensus 379 ~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555566666667777777777655
No 284
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.85 E-value=2.6 Score=32.91 Aligned_cols=48 Identities=29% Similarity=0.567 Sum_probs=37.0
Q ss_pred cccCccccc---CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 3 CNACWRELE---GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 3 CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|--|-+.|. +++.|-+=-|.||.+|+...+ ...||.|+-.|....+-+
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 555766663 478888889999999998653 678999999887766644
No 285
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=76.72 E-value=0.5 Score=29.24 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=11.4
Q ss_pred ccHHHHHhhhcCCCCCCCCcccc
Q 022126 23 LCTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 23 FC~~Ci~~~~~~~~~CPvC~~~l 45 (302)
+|..|....-.....||.|+++|
T Consensus 4 ~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 4 FCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCcccCCcCCcccccChhhCCCC
Confidence 34444433223455677776653
No 286
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=76.52 E-value=1.1 Score=43.58 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=36.0
Q ss_pred CccccCcccccC--CcEEecCCccccHHHHHhhhcC-----------------------CCCCCCCccccccC
Q 022126 1 MRCNACWRELEG--RAISTTCGHLLCTEDANKILSN-----------------------DAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~-----------------------~~~CPvC~~~l~~~ 48 (302)
+.|-||.--|.+ .+.+|.|-|.|-..|+.+++.. ...||+|+..+...
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 358888887753 3678999999988898876420 23699999988653
No 287
>PF15616 TerY-C: TerY-C metal binding domain
Probab=76.35 E-value=1.3 Score=38.02 Aligned_cols=38 Identities=26% Similarity=0.681 Sum_probs=29.1
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
||-|.... ..++-.||++||..= +...+||-|++...-
T Consensus 80 CP~CGn~~--~fa~C~CGkl~Ci~g-----~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 80 CPHCGNQY--AFAVCGCGKLFCIDG-----EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCcChh--cEEEecCCCEEEeCC-----CCCEECCCCCCeeee
Confidence 88998765 366779999999643 236799999997643
No 288
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=76.33 E-value=79 Score=30.78 Aligned_cols=55 Identities=20% Similarity=0.316 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.++.|.+|.++-.+..++..+.+-+..+..+++.+-.+...++..+++-|..|..
T Consensus 188 aqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 188 AQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444433
No 289
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=76.31 E-value=45 Score=32.60 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
|...+...+.-+..|..++.||+++|.|--.=+...|+-..+||
T Consensus 260 L~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 260 LQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555666666666666665554444444444444
No 290
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=76.30 E-value=37 Score=27.32 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR---QKRKLDEMYDQL 171 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR---q~~qLqelYdkL 171 (302)
.....|.++......+....+.|..+.++|+..+..-.. +..+|++.-+.|
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555566666655555544433222 555555554444
No 291
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=76.28 E-value=89 Score=31.66 Aligned_cols=32 Identities=25% Similarity=0.423 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYD 169 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYd 169 (302)
.|.-.|+|+...|.+.++||.|+..|++.-.+
T Consensus 349 EEKaaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 349 EEKAALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999999999999988875443
No 292
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=76.27 E-value=54 Score=28.88 Aligned_cols=34 Identities=35% Similarity=0.360 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 022126 146 DKQELQEKFSEKSRQK-RKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 146 kn~ELq~ky~EKsRq~-~qLqelYdkLK~~~e~~~ 179 (302)
++.|.....+.|-.+. .++..-...||.++|+++
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333 344444556666666554
No 293
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=76.18 E-value=47 Score=30.74 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
+.|++|++.+..++.+++..+++..+.+..|.+.-.+....|
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQ 73 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQ 73 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777777676666666555444333
No 294
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.04 E-value=20 Score=37.71 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+..|+.-.+.+.++...|+...++|.-+...|+..-|.||.+++
T Consensus 282 ~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 282 VSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777888888888899999999999999999988865
No 295
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=75.93 E-value=32 Score=26.14 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 022126 163 KLDEMYDQLR 172 (302)
Q Consensus 163 qLqelYdkLK 172 (302)
+++.|+..||
T Consensus 50 rvEamI~RLk 59 (65)
T TIGR02449 50 KVEAMITRLK 59 (65)
T ss_pred HHHHHHHhhh
Confidence 4445555554
No 296
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=75.91 E-value=26 Score=27.32 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-----HHHH----HHHHHHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKFSEK-----SRQK----RKLDEMYDQLRSEYESM 178 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky~EK-----sRq~----~qLqelYdkLK~~~e~~ 178 (302)
.-+..|+.|.+.++.+.+||+..|+.- .|+. ..|+++.+.|-.+.+++
T Consensus 17 ~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 17 EVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888777541 1222 44555555555544444
No 297
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=75.90 E-value=35 Score=26.50 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
+.+.+.+++..++.++.++..+..|.+.+-.+.+++.+.-.+|..+...+-+..
T Consensus 24 l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 24 LKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555666666666666666666777777777777666555555444444333
No 298
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.75 E-value=1.6 Score=50.28 Aligned_cols=45 Identities=29% Similarity=0.711 Sum_probs=33.3
Q ss_pred ccccCcccc-c-CCcEEecCCccccHHHHHhhhcC----------CCCCCCCccccc
Q 022126 2 RCNACWREL-E-GRAISTTCGHLLCTEDANKILSN----------DAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l-~-~~~vvT~CGHiFC~~Ci~~~~~~----------~~~CPvC~~~l~ 46 (302)
.|-||+.+- . ..++-..|||+|-..|..+.+++ -..||+|+.++.
T Consensus 3488 mCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred eEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 477888653 3 24667789999999888876653 247999999875
No 299
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=75.75 E-value=20 Score=32.28 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHH
Q 022126 103 QCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQM-----MEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 103 ~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~-----me~E~e~LrKkn~ELq~ky~EKs 158 (302)
.++++.+.--+.+.+++..++..|+.|+.++.. +..+++.|+.+..||.++.+++.
T Consensus 98 sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 98 SFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444443433466677777777777777766553 34455666666555555444433
No 300
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=75.73 E-value=68 Score=29.92 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~k 153 (302)
.++.+|.+.|++++.+|+..
T Consensus 72 ~~l~~en~~L~~e~~~l~~~ 91 (276)
T PRK13922 72 FDLREENEELKKELLELESR 91 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555433
No 301
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=75.64 E-value=78 Score=30.36 Aligned_cols=58 Identities=26% Similarity=0.386 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQ-------EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~-------E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
.++.||+....+++..+++++.|+. |-|.++.+.++|-+.|-+|=|-..=|+..++..
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444555555555555555555432 666666666666666666666544444444433
No 302
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=75.60 E-value=74 Score=30.08 Aligned_cols=13 Identities=15% Similarity=0.312 Sum_probs=5.5
Q ss_pred HhhhhhhhhhHHH
Q 022126 80 RSVMFYLGQKELE 92 (302)
Q Consensus 80 RAi~Fw~~Q~~qe 92 (302)
.-+..+.+..+++
T Consensus 99 ~pl~l~iF~~eI~ 111 (301)
T PF14362_consen 99 EPLELKIFEKEID 111 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 303
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.58 E-value=58 Score=29.87 Aligned_cols=67 Identities=22% Similarity=0.405 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 107 KCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 107 K~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
-|..|++++--.-+-+-..-.+|-+++.+|+.....|=....+-|+.|.--..|++|+.++-+.|.+
T Consensus 96 lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~ya~yaeq~~k~n~ls~~l~r 162 (217)
T KOG4515|consen 96 LCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQYAGYAEQLSKLNQLSDDLCR 162 (217)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555444444444556777888999999999999999999999989999999999888864
No 304
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=75.51 E-value=38 Score=27.43 Aligned_cols=60 Identities=18% Similarity=0.341 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIE--SLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e--~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
..|....+++..++..+..++..+++.+. .-+.+..++.+.+.+..|++.+|+..+.-||
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~lk 97 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEKLELTAKLQVLK 97 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56777777777777777777888886664 4456777777778888888888776665543
No 305
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.47 E-value=1.1e+02 Score=34.69 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.+....++++.+++.-..+++.++.++.+++..++++..-..+++..-.+|..+...++++
T Consensus 480 ~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~ 540 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRS 540 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566677778888888899999999999999988888888887777777666556554
No 306
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=75.43 E-value=4.4 Score=30.07 Aligned_cols=45 Identities=24% Similarity=0.579 Sum_probs=33.7
Q ss_pred cccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 3 CNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 3 CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
|-.|.+.|.. .++|-+=-..||..|+...+ ...||.|+-.|..+.
T Consensus 8 CE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~RP 55 (57)
T PF06906_consen 8 CECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVRRP 55 (57)
T ss_pred ccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccccCC
Confidence 6678887742 46666655689999998875 678999998876543
No 307
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.41 E-value=20 Score=32.58 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK 161 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~ 161 (302)
+..-..+...|+.++.-.......++..-..|..++..++..+..++++|..++.||.|++
T Consensus 134 l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer~L 194 (194)
T PF15619_consen 134 LQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKEREL 194 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 308
>PRK01203 prefoldin subunit alpha; Provisional
Probab=75.22 E-value=52 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
.++...+.+++..++|+....+|.++.+++++-|+.|.
T Consensus 84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999999986
No 309
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=75.06 E-value=69 Score=29.46 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
.+-++....+++|..++|+..+++..|
T Consensus 117 ~~~~~l~KaKk~Y~~~C~e~e~a~~~~ 143 (239)
T cd07647 117 ELYKKTMKAKKSYEQKCREKDKAEQAY 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555554444333
No 310
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=75.02 E-value=28 Score=37.58 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
..++..+.++..+.+.|+.|+..+....+..+...+.|-++|+|--|+.+.++.-....|
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666677666666666665444443
No 311
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=74.88 E-value=1e+02 Score=31.39 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
-.|+..++....-|++++.|...-++.|.+--..|...++
T Consensus 350 ~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~ 389 (421)
T KOG2685|consen 350 VDEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIA 389 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666555555543
No 312
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=74.88 E-value=19 Score=33.92 Aligned_cols=45 Identities=20% Similarity=0.266 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
-.|+.++++|+.|+..||..++|++..+++-.++ -.++|..|-++
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r---q~~~y~dld~r 101 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER---QKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3455566777777777777777776666542221 22356555544
No 313
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=74.86 E-value=38 Score=26.47 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
..+-..+.|..-|.+--.++++++..|....+
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555566666666666666655543
No 314
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.80 E-value=36 Score=26.14 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKk 146 (302)
.++.|++|..++.+++.++..++++
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 315
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.79 E-value=44 Score=38.36 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.|-.+-...-+.+++|+.+|.++++.+...+....-|..+++++.+
T Consensus 1700 ~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~ 1745 (1758)
T KOG0994|consen 1700 KLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLD 1745 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 3333333344556778888888888887777777888888776644
No 316
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=74.72 E-value=38 Score=36.71 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDK 147 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn 147 (302)
+..|..+|.+++++++.++..+.....|.+.|...+
T Consensus 29 E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~ 64 (717)
T PF09730_consen 29 EAYLQQRILELENELKQLRQELSNVQAENERLSQLN 64 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333333333
No 317
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.58 E-value=68 Score=36.69 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+.+..++..++++++..+++..|+....+.-.++.++++.-.++|....+..++.
T Consensus 408 K~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~ 462 (1293)
T KOG0996|consen 408 KRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERE 462 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888888888888888888888888888888887776665555443
No 318
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.45 E-value=28 Score=31.35 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 022126 166 EMYDQLRSEYESMKRSA 182 (302)
Q Consensus 166 elYdkLK~~~e~~~rsa 182 (302)
+.+++++.....++.++
T Consensus 135 ~~i~~~~~~~~~~~~~a 151 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666655554443
No 320
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.41 E-value=61 Score=28.59 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=9.5
Q ss_pred HHHHHhcCCChHHH
Q 022126 61 WVNMAMAGVSPQIL 74 (302)
Q Consensus 61 ~Kt~vL~GlsP~~I 74 (302)
|-.-+..||-|-+|
T Consensus 19 ~G~e~v~~LmP~VV 32 (158)
T PF09744_consen 19 YGEEAVKGLMPKVV 32 (158)
T ss_pred hChhHHHHHHHHHH
Confidence 44457778888864
No 321
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.27 E-value=71 Score=36.00 Aligned_cols=63 Identities=13% Similarity=0.350 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
...+++...+|+++...++..+.+.....++...|...+.-.+.+...+++-...-...++.+
T Consensus 691 r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i 753 (1200)
T KOG0964|consen 691 RNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI 753 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence 344445555566665555556666666666666666666666666666666555555555544
No 322
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=74.24 E-value=78 Score=29.74 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=34.2
Q ss_pred HhcCCChHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 65 AMAGVSPQILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFT 116 (302)
Q Consensus 65 vL~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~ 116 (302)
-+.|++|..+++..---..|+.+|..+.- .|...+++||..|-..+.
T Consensus 15 ~llGl~~~~L~~~~~~~~~~~~~q~~L~~-----eiE~~Lk~KC~~Lls~~~ 61 (238)
T PF14735_consen 15 RLLGLTPADLLQLMPDKKDVQRMQQRLPR-----EIEERLKKKCFSLLSYHQ 61 (238)
T ss_pred CccCCCHHHHHhhCCchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhC
Confidence 47899999999877777777766666543 345578888888776553
No 323
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=74.11 E-value=1.7 Score=30.78 Aligned_cols=31 Identities=19% Similarity=0.645 Sum_probs=23.3
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhh
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
.|..|.+.|. ...--..||++||..|.....
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 5888988775 234456899999999987653
No 324
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=74.08 E-value=22 Score=32.83 Aligned_cols=60 Identities=17% Similarity=0.301 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMME--QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me--~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++..+.++...+..+.++++++. .+++.|++.+.++...+++.....++....|+.-..+
T Consensus 7 ~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~ 68 (207)
T PF05546_consen 7 LSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444555543 3678888888888888888888888888888765443
No 325
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=73.71 E-value=66 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
|..+...|+....+|+..|........+|++-.+.++
T Consensus 140 l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~ 176 (184)
T PF05791_consen 140 LQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 3444455555555555555555554444444444443
No 326
>PRK04863 mukB cell division protein MukB; Provisional
Probab=73.64 E-value=1.8e+02 Score=34.42 Aligned_cols=14 Identities=0% Similarity=-0.242 Sum_probs=5.4
Q ss_pred ChHHHHHHHHHhhh
Q 022126 70 SPQILMKSAYRSVM 83 (302)
Q Consensus 70 sP~~Ime~a~RAi~ 83 (302)
.|+....+.-.|..
T Consensus 277 ~~eERR~liEEAag 290 (1486)
T PRK04863 277 HANERRVHLEEALE 290 (1486)
T ss_pred CHHHHHHHHHHHHH
Confidence 34543333333333
No 327
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=73.54 E-value=28 Score=30.87 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=7.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEK 157 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EK 157 (302)
.|+.+.-+|++.|.||
T Consensus 70 Eleekll~lq~lfq~K 85 (160)
T PF03978_consen 70 ELEEKLLKLQKLFQDK 85 (160)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 328
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=73.43 E-value=25 Score=33.33 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+++++|+..|++|++.|+.++++|+..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888888877777754443
No 329
>smart00338 BRLZ basic region leucin zipper.
Probab=73.39 E-value=13 Score=27.28 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ 152 (302)
....|..+++.|+.++..|..
T Consensus 41 en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 41 ENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 330
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=73.28 E-value=13 Score=30.28 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~q 163 (302)
...++..++.++..++...+.+.++...|++++.+...++++
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666666666666555444
No 331
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=73.22 E-value=63 Score=33.33 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS-------RQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs-------Rq~~qLqelYdkLK~~~e~~ 178 (302)
..+++...++.-......++.|++..++-.+||.+++.-.- -+|..||+.|+.|-.+.-.+
T Consensus 296 LteeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr~i 363 (488)
T PF06548_consen 296 LTEELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHRRI 363 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555445556788889999999999988875422 37888888888886665433
No 332
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=73.16 E-value=34 Score=35.98 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
..++.++..|+-++.||..+|.++
T Consensus 109 a~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 333
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=73.01 E-value=34 Score=30.35 Aligned_cols=12 Identities=50% Similarity=0.634 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHh
Q 022126 135 MMEQEIESLSKD 146 (302)
Q Consensus 135 ~me~E~e~LrKk 146 (302)
..+.|.+.|++.
T Consensus 172 ~~~~~~~~LkkQ 183 (192)
T PF05529_consen 172 KKEKEIEALKKQ 183 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 334
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=72.98 E-value=1.2e+02 Score=31.45 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=7.6
Q ss_pred CCCCCcccccccccC
Q 022126 203 MDNRDPIRKDWSVYS 217 (302)
Q Consensus 203 ~~~~~~~r~~~~~~~ 217 (302)
|-|+=+-|-|.+-.+
T Consensus 215 ~kgriigreGrnir~ 229 (514)
T TIGR03319 215 MKGRIIGREGRNIRA 229 (514)
T ss_pred hhccccCCCcchHHH
Confidence 444445566655444
No 335
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=72.97 E-value=75 Score=28.95 Aligned_cols=7 Identities=14% Similarity=0.747 Sum_probs=3.5
Q ss_pred ChHHHHH
Q 022126 70 SPQILMK 76 (302)
Q Consensus 70 sP~~Ime 76 (302)
+|+.+++
T Consensus 24 DP~~~l~ 30 (219)
T TIGR02977 24 DPEKMIR 30 (219)
T ss_pred CHHHHHH
Confidence 5654443
No 336
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=72.93 E-value=13 Score=38.19 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+..+|.....-..+|+||+++-++=+.+.+-|..=..+|...
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~ 315 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTL 315 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 456666666777777777777776666655554444444444
No 337
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=72.91 E-value=24 Score=30.78 Aligned_cols=41 Identities=29% Similarity=0.495 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+.|++++.+++..+++++..++.+....+.+.++.++++.+
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555444
No 338
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=72.89 E-value=20 Score=34.55 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022126 88 QKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEM 167 (302)
Q Consensus 88 Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqel 167 (302)
|+-+|+.-|..++.+.-. ++ .-+++.+++++++.+.|..+-..+...|+++|+-|.+....-.+..++|...
T Consensus 18 qKIqelE~QldkLkKE~q------Qr--QfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQ------QR--QFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHH------HH--HHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
Confidence 566666665433322111 12 2367778889999888899889999999999999998888777777776654
Q ss_pred H
Q 022126 168 Y 168 (302)
Q Consensus 168 Y 168 (302)
+
T Consensus 90 l 90 (307)
T PF10481_consen 90 L 90 (307)
T ss_pred H
Confidence 4
No 339
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.87 E-value=45 Score=33.13 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
++++++-.|.|+.-.+||....+.=.++...|++..|-|+++.+.
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444445555555555555555566667777777777666443
No 340
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=72.65 E-value=4 Score=28.63 Aligned_cols=39 Identities=23% Similarity=0.485 Sum_probs=21.9
Q ss_pred cccCcccccCCcE-EecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 3 CNACWRELEGRAI-STTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 3 CNiC~~~l~~~~v-vT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
|..|.+.+.+..+ +..-|..|-..|. .|-.|++.|...+
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF--------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS--------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc--------ccCCCCCccCCCe
Confidence 5566666653333 3456666665554 5666666665543
No 341
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=72.63 E-value=64 Score=33.03 Aligned_cols=42 Identities=31% Similarity=0.466 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.+.++++.+.++..+|-..+.|+.++..++.+..+..-++|.
T Consensus 194 ~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~ 235 (447)
T KOG2751|consen 194 RLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYN 235 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555544444444444444433333
No 342
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.51 E-value=2 Score=42.80 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=31.9
Q ss_pred ccccCccccc---C-CcEEecCCccccHHHHHhhhcCCCCCCCCcccc
Q 022126 2 RCNACWRELE---G-RAISTTCGHLLCTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 2 ~CNiC~~~l~---~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l 45 (302)
.|++|.-.+. + .-++-+|||-||..|...|......|..|-...
T Consensus 308 ~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~r~~ 355 (384)
T KOG1812|consen 308 QCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECCRYK 355 (384)
T ss_pred cCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCccccc
Confidence 5889987653 2 344556999999999988877777776665543
No 343
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=72.50 E-value=43 Score=25.99 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 150 LQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 150 Lq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
...|+..-.+....+.+.+.+|+.+.+.++
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444445566667777777777765543
No 344
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=72.41 E-value=61 Score=32.64 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
..+.+++..+...+.++..++.+++.+.+.+.|+|+++.+-+
T Consensus 83 ~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 83 KLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345677777888888888899999999999999999999877
No 345
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.35 E-value=34 Score=28.29 Aligned_cols=33 Identities=12% Similarity=0.392 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
.+.+++.++..+-.++.+++.++..|-.+|.+|
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 346
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=72.24 E-value=1e+02 Score=30.32 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 91 LEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHT 124 (302)
Q Consensus 91 qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s 124 (302)
+|++-.+|+|++.++..--.-.++|++.+.+++.
T Consensus 16 iEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 16 IEICQEENKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445565554433211222444444444443
No 347
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=72.16 E-value=19 Score=39.78 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhc-CCC
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQ--EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE---SMKRSAI-QPS 186 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~--E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e---~~~rsa~-~~a 186 (302)
+.+++.+.++++++..+.+++..|+. ....++...+-|.+.++||+|+...|.-+-.-|...++ ..+.+++ +.|
T Consensus 784 d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~A 863 (984)
T COG4717 784 DALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQEA 863 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHH
Confidence 34455566666666666666666654 55677888889999999999999998866655554444 2333443 555
Q ss_pred CCCCC
Q 022126 187 NSFYP 191 (302)
Q Consensus 187 ~~~~~ 191 (302)
..||.
T Consensus 864 ~~~F~ 868 (984)
T COG4717 864 SEFFM 868 (984)
T ss_pred HHHHh
Confidence 54443
No 348
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.14 E-value=68 Score=33.91 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
.+++.+++.++..+..++..++.+++.++++..+++++.
T Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 472 (650)
T TIGR03185 434 QNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK 472 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554444
No 349
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.14 E-value=1e+02 Score=30.08 Aligned_cols=101 Identities=14% Similarity=0.261 Sum_probs=50.9
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 74 LMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 74 Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+|.++.-++.|-.|+.. -.|-.-.++..-+.|++...+.|.++..++++.+..|...+..+...+..-++ ||.+.
T Consensus 88 vmAvi~aGi~y~~y~~~--K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~ 162 (300)
T KOG2629|consen 88 VMAVILAGIAYAAYRFV--KSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRA 162 (300)
T ss_pred HHHHHHhhHHHHHHHHH--HHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 44445555666555543 12222234444444667777777777777777777666555544422222222 55444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 154 FSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 154 y~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
+.+-..-.-+|..-.++|++++..++
T Consensus 163 L~~l~~~~~~~s~~~~k~esei~~Ik 188 (300)
T KOG2629|consen 163 LASLKNTLVQLSRNIEKLESEINTIK 188 (300)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 43322222255555555666555443
No 350
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=71.97 E-value=61 Score=33.17 Aligned_cols=51 Identities=22% Similarity=0.403 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 022126 135 MMEQEIESLSKDKQELQEKFS--EKSRQKRKLDEMYDQLRSEYESMKRSAIQPSNS 188 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~--EKsRq~~qLqelYdkLK~~~e~~~rsa~~~a~~ 188 (302)
.+++--..|+.|..=||..+. .+.||...||||-.+|.+- +-++-..|+.+
T Consensus 192 vLkqnS~~LEekLr~lq~qLqdE~prrqe~e~qELeqkleag---ls~~~l~p~~~ 244 (558)
T PF15358_consen 192 VLKQNSALLEEKLRYLQQQLQDETPRRQEAEWQELEQKLEAG---LSRSGLPPTAD 244 (558)
T ss_pred ccccchHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHhhh---hhhcCCCcccc
Confidence 333333444444444554443 3668888899887777666 44555556554
No 351
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.90 E-value=66 Score=27.90 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+++++..++..+.-.+.....+..+.++-++.+..|+..+.+-....++|+.-.+.|+++
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sE 81 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSE 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333334444444444444444444444444444444444444433
No 352
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=71.85 E-value=1.4e+02 Score=32.39 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 022126 141 ESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAIQP 185 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~~~ 185 (302)
+.|++-.++|-..=++|.|.+..|.+..|..+... ++++...++
T Consensus 277 ~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~-~iv~i~qg~ 320 (861)
T KOG1899|consen 277 NTLKNALESLMRANEQKDRFIESLRNYLNNYDKNA-QIVRILQGE 320 (861)
T ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhh-hhhhhhcCC
Confidence 36777778888888889998888887777665442 344544433
No 353
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.82 E-value=63 Score=28.23 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSK---DKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrK---kn~ELq~ky~EKsRq~~qLqelY 168 (302)
++..++.+++.++.++.....+++.|++ .++||+.++++=..++.+..+-|
T Consensus 21 ~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~ 74 (155)
T PF06810_consen 21 KVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEY 74 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555556666665 56666665555444444433333
No 354
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.79 E-value=60 Score=31.12 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
.|..|+..-..|+|..+|..+-||
T Consensus 194 ~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 194 NLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555
No 355
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.79 E-value=26 Score=37.15 Aligned_cols=78 Identities=19% Similarity=0.300 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------HHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 109 EAMQEKFTEKLEQVHTAYQKMAKRCQMMEQ-EIES--------LSK--DKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 109 e~L~~~l~~ki~e~~s~~~kl~~kl~~me~-E~e~--------LrK--kn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
.+...+++++|.+++.++++++.++.+..+ ++++ .|| ...|.++.+.|++.=+.+|-||-..+|=- |+
T Consensus 349 kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWT-EM 427 (832)
T KOG2077|consen 349 KQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWT-EM 427 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHH-HH
Confidence 344566777888888888887665443311 1111 122 34789999999988788888888777643 67
Q ss_pred HHHhhcCCCC
Q 022126 178 MKRSAIQPSN 187 (302)
Q Consensus 178 ~~rsa~~~a~ 187 (302)
+|++-.+|+.
T Consensus 428 iRAsre~p~v 437 (832)
T KOG2077|consen 428 IRASRENPAV 437 (832)
T ss_pred HHHhhcCchh
Confidence 7888777765
No 356
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.59 E-value=29 Score=33.36 Aligned_cols=54 Identities=9% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCCCCC
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE----SMKRSAIQPSNS 188 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e----~~~rsa~~~a~~ 188 (302)
.|..+++.-.++-.-|...|.-|..+.+.+.--..-||++.. ++|+.-++||-+
T Consensus 119 ~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAin 176 (330)
T KOG2991|consen 119 KLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAIN 176 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHH
Confidence 344444444444455555666666655555555555555533 444455566655
No 357
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=71.57 E-value=1.9 Score=44.77 Aligned_cols=20 Identities=10% Similarity=0.562 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 022126 162 RKLDEMYDQLRSEYESMKRSAIQ 184 (302)
Q Consensus 162 ~qLqelYdkLK~~~e~~~rsa~~ 184 (302)
..+.+||+++|++ +|..|.+
T Consensus 441 s~~~~L~ekvk~q---L~~na~d 460 (550)
T PF00509_consen 441 SNVNNLYEKVKRQ---LRENAED 460 (550)
T ss_dssp HHHHHHHHHHHHH---HGTGEEE
T ss_pred HHHHHHHHHHHHH---Hhccchh
Confidence 6788999999999 7766653
No 358
>PF12773 DZR: Double zinc ribbon
Probab=71.47 E-value=3.2 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.399 Sum_probs=27.1
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhh--c-CCCCCCCCcccccc
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKIL--S-NDAACPICDQVLSK 47 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~--~-~~~~CPvC~~~l~~ 47 (302)
|+.|...+.. +-.||..|...+. . ....||.|++.+..
T Consensus 1 Cp~Cg~~~~~-------~~~fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 1 CPHCGTPNPD-------DAKFCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred CCCcCCcCCc-------cccCChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 6778777653 2568888888776 2 25689999997654
No 359
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.29 E-value=31 Score=30.01 Aligned_cols=53 Identities=25% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDK--QELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn--~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
+.++..++..++..+..++.|+..|.... .||.....+-..+..+|++-...|
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443322 444444444344444444333333
No 360
>PRK00106 hypothetical protein; Provisional
Probab=71.16 E-value=1.4e+02 Score=31.36 Aligned_cols=16 Identities=19% Similarity=0.105 Sum_probs=9.1
Q ss_pred cCCCCCcccccccccC
Q 022126 202 MMDNRDPIRKDWSVYS 217 (302)
Q Consensus 202 ~~~~~~~~r~~~~~~~ 217 (302)
-|-|+=+-|-|.+-..
T Consensus 235 emkGriIGreGrNir~ 250 (535)
T PRK00106 235 NMKGRIIGREGRNIRT 250 (535)
T ss_pred HhhcceeCCCcchHHH
Confidence 4455555666666544
No 361
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=3.2 Score=39.00 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=34.5
Q ss_pred cccCccccc-CCcEEecCCccccHHHHHhhhc--------CCCCCCCCcccc
Q 022126 3 CNACWRELE-GRAISTTCGHLLCTEDANKILS--------NDAACPICDQVL 45 (302)
Q Consensus 3 CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~~--------~~~~CPvC~~~l 45 (302)
|-.|..+|. ++.+-..|=|+|-+.|+..+-. ....||.|...+
T Consensus 53 C~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 53 CRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 677888885 5788889999999999987642 256899998753
No 362
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=71.04 E-value=60 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
..+.+.-.++.+..+.|+....+..+.+..|+.++.|+-..++++.-.+-+|+..|.+
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k 90 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLK 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567777777777777777777777777777777777633333356655543
No 363
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=70.62 E-value=44 Score=31.51 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
+-+|..+++.|+.++.+|....++-..++.++++--..|-..++.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777777666666555554
No 364
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.39 E-value=45 Score=28.19 Aligned_cols=60 Identities=12% Similarity=0.299 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.++...++.+......+....-.++.++.++...+.++..+++.|+.-|+.+..++..+
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 365
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.27 E-value=1.4e+02 Score=33.87 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
+..++.+++++.+++-.++..++.++..-..+..++.+++++...+...+.+-...||
T Consensus 274 i~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk 331 (1072)
T KOG0979|consen 274 IEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLK 331 (1072)
T ss_pred hhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666655544433333333333
No 366
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.24 E-value=63 Score=26.95 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
..+.+.+..++...+.+++.|.++...|++++.+...+++++
T Consensus 70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555666666666666666665555544443
No 367
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.14 E-value=35 Score=38.83 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 160 QKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 160 q~~qLqelYdkLK~~~e 176 (302)
++.+++.-...++.+.+
T Consensus 686 ~l~~l~~~l~~~~~e~~ 702 (1201)
T PF12128_consen 686 QLNELEEELKQLKQELE 702 (1201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 368
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.99 E-value=56 Score=26.25 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=12.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..+.++|......-..++..++.-+..|+.+
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444
No 369
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=69.80 E-value=42 Score=27.40 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKM--AKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 116 ~~ki~e~~s~~~kl--~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
+.++..+++.++.| +..+..++.++..++.+..+|...++--++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444455444444 344444444444445444444444443333
No 370
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=69.78 E-value=76 Score=27.72 Aligned_cols=55 Identities=13% Similarity=0.379 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
+...+.|+..+..+...++.++.+..+.+.+...++.++..--++++.....++.
T Consensus 79 L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~ 133 (177)
T PF13870_consen 79 LTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQ 133 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666777777777666666666666666666666666666555543
No 371
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=69.73 E-value=54 Score=25.95 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
+.++.+-..+..+.+.++-...+|......=..++..+++..+.|-
T Consensus 28 eELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 28 EELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344433333344444554444443
No 372
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.61 E-value=1.4e+02 Score=31.20 Aligned_cols=58 Identities=19% Similarity=0.398 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKF----------SEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky----------~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.++++|+..+...+.|++.|+-+..+|...+ ++-..+..||..-.|+.+.+.++++.+
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~ 397 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKS 397 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3444555555666677777777777776444 333444555555555555555555554
No 373
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=69.60 E-value=57 Score=31.68 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++++-+++|+.|+.++..|+.+==..+=--.|-|-+++|.-++++||+...+.+|+.
T Consensus 83 ~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrss 139 (305)
T PF15290_consen 83 RLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSS 139 (305)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666665555533222222223455555555555666665555555443
No 374
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=69.51 E-value=91 Score=32.80 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=3.5
Q ss_pred ChHHHH
Q 022126 70 SPQILM 75 (302)
Q Consensus 70 sP~~Im 75 (302)
+|.+|+
T Consensus 150 ~~~eil 155 (555)
T TIGR03545 150 DPRALL 155 (555)
T ss_pred CHHHHh
Confidence 555555
No 375
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.39 E-value=3.6 Score=41.50 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=26.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
.|-+|.....+..+...|||.||..|...+++
T Consensus 72 ~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~ 103 (444)
T KOG1815|consen 72 QCGICVESYDGEIIGLGCGHPFCPPCWTGYLG 103 (444)
T ss_pred cCCcccCCCcchhhhcCCCcHHHHHHHHHHhh
Confidence 58888887755577788999999999999865
No 376
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.32 E-value=48 Score=37.36 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
|..+-.|+-.|+.+...|.+|+++|.+.|.+-..++.+++++.-.|.-+.+++
T Consensus 396 ~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 396 YEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455667777777888888888888888888888888877776665544
No 377
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.08 E-value=83 Score=31.07 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQK 128 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~k 128 (302)
+.|.+|++++.+..++
T Consensus 21 r~Y~qKleel~~lQ~~ 36 (330)
T PF07851_consen 21 RSYKQKLEELSKLQDK 36 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555443333
No 378
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=69.08 E-value=92 Score=28.41 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
++...++....++.+++.-+.+++.|+++.+||.+.|.++++
T Consensus 137 k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne 178 (192)
T COG5374 137 KIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNE 178 (192)
T ss_pred chhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 344455555555555555555666666665555544444333
No 379
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=69.01 E-value=47 Score=30.21 Aligned_cols=32 Identities=25% Similarity=0.619 Sum_probs=0.0
Q ss_pred CCCccc-ccccccCCCCCCCCCCCc-CccccCCCCC
Q 022126 205 NRDPIR-KDWSVYSPGTPGPREDIW-PARQNSSNSG 238 (302)
Q Consensus 205 ~~~~~r-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 238 (302)
+...+| +|-+-|++.-+ ..-.| |-|-..|.||
T Consensus 157 ~~k~lr~~~yNPL~G~~g--gs~~wRPgrRgps~GG 190 (190)
T PF06936_consen 157 DKKPLRGSDYNPLTGDGG--GSCSWRPGRRGPSSGG 190 (190)
T ss_dssp ------------------------------------
T ss_pred ccCCCCCCCCCCCCCCCC--CCCccCCCCCCCCCCC
Confidence 344555 45555544322 23368 7777777665
No 380
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=68.77 E-value=79 Score=33.73 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
+|...+..++-+..+++++++.|+.....|++-.
T Consensus 199 eL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~ 232 (617)
T PF15070_consen 199 ELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR 232 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4555555566666666667777766555554433
No 381
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=68.55 E-value=1.6 Score=46.36 Aligned_cols=47 Identities=21% Similarity=0.531 Sum_probs=32.2
Q ss_pred CccccCcccccC-CcEEecCCcc----ccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEG-RAISTTCGHL----LCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~-~~vvT~CGHi----FC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
..|+.|...... .-+--.||.. +|..|....-.....||.|++.+..
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCCCCcCCCCCCCCCcccccccccCCcccc
Confidence 469999987643 3445556654 4777766655557789999988765
No 382
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=68.47 E-value=16 Score=31.94 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 154 FSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 154 y~EKsRq~~qLqelYdkLK~~~ 175 (302)
|.-..||+.|+++-+++++...
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~ 89 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSL 89 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555554443
No 383
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.45 E-value=99 Score=30.88 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HH
Q 022126 91 LEMQYKMNRIVAQCRQKCEAMQEKFT---EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKL-DE 166 (302)
Q Consensus 91 qe~~yQ~~~l~~~lreK~e~L~~~l~---~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL-qe 166 (302)
.|.++.+ ++++-..+.|..++. +.+-.....++.|..-+..++.|...|+-+.++|+..+.||.-+-++| .|
T Consensus 95 ~e~q~e~----~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 95 EERQQES----EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 022126 167 MYDQLRSEYE 176 (302)
Q Consensus 167 lYdkLK~~~e 176 (302)
|-+.++-+-+
T Consensus 171 LaE~layqq~ 180 (401)
T PF06785_consen 171 LAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHH
No 384
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.43 E-value=1.5e+02 Score=33.67 Aligned_cols=49 Identities=18% Similarity=0.233 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~q 163 (302)
+...+.++...++++.+-+..-..|+..+.-...+|.+.|..+.+++.+
T Consensus 479 ~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~ 527 (1195)
T KOG4643|consen 479 LEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYEL 527 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555566666666666666666655554433
No 385
>PRK11519 tyrosine kinase; Provisional
Probab=68.30 E-value=89 Score=33.53 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=8.0
Q ss_pred HHHHhhhhhhhhhH
Q 022126 77 SAYRSVMFYLGQKE 90 (302)
Q Consensus 77 ~a~RAi~Fw~~Q~~ 90 (302)
.+.+++.|-..|..
T Consensus 264 ~a~~a~~fL~~ql~ 277 (719)
T PRK11519 264 EASKSLAFLAQQLP 277 (719)
T ss_pred HHHHHHHHHHHHHH
Confidence 44556666666654
No 386
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=68.28 E-value=99 Score=28.46 Aligned_cols=58 Identities=19% Similarity=0.495 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
..|.++|..+...+..+..+....+..+..|.+.+..|...+. ...+-|..++..+++
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~-------~~k~~~~~~~~eld~ 229 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELE-------KEKEKYKKVQEELDQ 229 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3344444444444444444444445555555555555544444 444444444444443
No 387
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=68.24 E-value=48 Score=34.96 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
..+|.+.|++...++..+.+-+..|-.+++.+
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333444444333
No 388
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=68.18 E-value=53 Score=27.70 Aligned_cols=6 Identities=0% Similarity=0.052 Sum_probs=2.4
Q ss_pred ChHHHH
Q 022126 70 SPQILM 75 (302)
Q Consensus 70 sP~~Im 75 (302)
+.+.++
T Consensus 23 d~~~v~ 28 (158)
T PF03938_consen 23 DVDKVF 28 (158)
T ss_dssp -HHHHH
T ss_pred eHHHHH
Confidence 344444
No 389
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=68.12 E-value=1.6e+02 Score=30.76 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.+..++..++.+...+...+++|...-.+-..++.+++..+..+++.
T Consensus 387 el~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~ 433 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRY 433 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444455555555555555
No 390
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=68.09 E-value=53 Score=31.90 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
+.+..++..|.++..+|+...+.|.|++..|++.+.|+-
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666666666667766666543
No 391
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=67.99 E-value=30 Score=26.06 Aligned_cols=34 Identities=12% Similarity=0.351 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
+.++++|..+-+.+.++..++.++..|..+..++
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444333
No 392
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=67.95 E-value=5.1 Score=29.06 Aligned_cols=40 Identities=20% Similarity=0.492 Sum_probs=21.4
Q ss_pred cccCcccccCC---------cEEecCCccccHHHHHhhhcCCCCCCCCc
Q 022126 3 CNACWRELEGR---------AISTTCGHLLCTEDANKILSNDAACPICD 42 (302)
Q Consensus 3 CNiC~~~l~~~---------~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~ 42 (302)
|-.|...|... ..=..|++.||.+|=.=.=+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 66788877642 22356999999999443323356799985
No 393
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=67.93 E-value=16 Score=28.64 Aligned_cols=15 Identities=20% Similarity=0.219 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHh
Q 022126 132 RCQMMEQEIESLSKD 146 (302)
Q Consensus 132 kl~~me~E~e~LrKk 146 (302)
++.+-+.|++.|..=
T Consensus 13 kL~~K~eEI~rLn~l 27 (76)
T PF11544_consen 13 KLNDKQEEIDRLNIL 27 (76)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444444333
No 394
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.86 E-value=2.7 Score=45.88 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=26.0
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhh
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~ 32 (302)
.|-+|..+|-. ..++-.|||.|=..|+.++.
T Consensus 819 ~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 819 SCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred chHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 48899998864 57789999999999998874
No 395
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=67.82 E-value=63 Score=37.06 Aligned_cols=46 Identities=22% Similarity=0.428 Sum_probs=22.1
Q ss_pred ccccccccCCCC-CCCCCCCcC-ccccCCCCCCcccCCCCCCCCCCCC
Q 022126 209 IRKDWSVYSPGT-PGPREDIWP-ARQNSSNSGPFDIATGSPAKQPVIP 254 (302)
Q Consensus 209 ~r~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
.|.|.-+..... +|-+.|.|- ++--.+.---|.+|.|.|+...-+|
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 421 (1195)
T PLN03137 374 MQTDAQVHLRNEQGRYEKDNWNTPRDSFSSVDRYGISSGPVEREPYVP 421 (1195)
T ss_pred cccccceeecCCCCcccccccCCcccchhhhhhhcccCCCcccCcccc
Confidence 344444443333 234667893 3333333356666666665543333
No 396
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=67.64 E-value=1.5 Score=41.54 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=20.5
Q ss_pred ccccCcccccCCcEEecC-----CccccHHHHHhhhcCCCCCCCCcccc
Q 022126 2 RCNACWRELEGRAISTTC-----GHLLCTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~C-----GHiFC~~Ci~~~~~~~~~CPvC~~~l 45 (302)
.||+|...-. -.++..= -|.+|.-|...|--....||.|+..=
T Consensus 174 ~CPvCGs~P~-~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 174 YCPVCGSPPV-LSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp S-TTT---EE-EEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred cCCCCCCcCc-eEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 6999998643 2333333 37789999998865677899999853
No 397
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.62 E-value=74 Score=36.52 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.+..|..+++.+...++++|.+....++.+++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELE 525 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433
No 398
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.41 E-value=55 Score=34.05 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAK 131 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~ 131 (302)
...+++.++.++++++.++.
T Consensus 259 k~~f~~~~~~i~~~i~~lk~ 278 (622)
T COG5185 259 KLGFEKFVHIINTDIANLKT 278 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555543
No 399
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.39 E-value=72 Score=35.26 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.....++++.-+.+|..+.++++.++.||+..-++=.-+++.......+|+.+++-++.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566777888888888888888887777777788888888888888876643
No 400
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=67.30 E-value=37 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~EL 150 (302)
++.+++.++.|.+.|+.+...|
T Consensus 36 ~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 36 LQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433
No 401
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=67.30 E-value=1.9e+02 Score=31.35 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEI 140 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~ 140 (302)
+++..|+-|+..||+|+
T Consensus 181 aevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 181 AEVSELKLKLTALEKEQ 197 (861)
T ss_pred HHHHHhHHHHHHHHHHh
Confidence 34444554555555444
No 402
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.29 E-value=80 Score=33.53 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
...++..++.+.+++....+.|...+.||..-|.++
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777777777777777777777777665
No 403
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=67.24 E-value=25 Score=26.09 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhHHHH
Q 022126 134 QMMEQEIESLSKDKQEL 150 (302)
Q Consensus 134 ~~me~E~e~LrKkn~EL 150 (302)
++++.+++.+++++.+|
T Consensus 27 ~~l~~~i~~l~~e~~~L 43 (80)
T PF04977_consen 27 AELQKEIEELKKENEEL 43 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 404
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.21 E-value=86 Score=31.58 Aligned_cols=18 Identities=6% Similarity=0.095 Sum_probs=11.2
Q ss_pred hcCCChHHHHHHHHHhhh
Q 022126 66 MAGVSPQILMKSAYRSVM 83 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~ 83 (302)
+.+.+|+...+++...+.
T Consensus 128 ~~~~dP~~Aa~i~n~l~~ 145 (498)
T TIGR03007 128 YEDKDPELAKDVVQTLLT 145 (498)
T ss_pred eeCCCHHHHHHHHHHHHH
Confidence 456777776666555544
No 405
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=67.11 E-value=55 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+|..+.-.....+..||.++.|+.....+-.+++..+..-.+.|+.+
T Consensus 23 kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 23 KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455555555544444444444444444444444
No 406
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=67.06 E-value=70 Score=30.00 Aligned_cols=67 Identities=12% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQ-VHTAYQKMAKRCQMMEQEIESLSKDK----------QELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e-~~s~~~kl~~kl~~me~E~e~LrKkn----------~ELq~ky~EKsRq~~qLqelY 168 (302)
.+++..+....+++++.... ..+.+++++.+...+..+.++.|+|. +..+++|.++..+.....+-|
T Consensus 104 ~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Y 181 (234)
T cd07686 104 QQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQY 181 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHH
No 407
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=67.02 E-value=36 Score=33.91 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSE---KSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~E---KsRq~~qLqelYdkLK~~~e~~~ 179 (302)
..++.+++.+.+++.+|.+++++ +.+|+.++++-.+++..+.+.++
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~ 293 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAE 293 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544 33444555555555555554443
No 408
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=66.76 E-value=2e+02 Score=31.38 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 74 LMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESL 143 (302)
Q Consensus 74 Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~L 143 (302)
.|-+|.-.+.|.+.=..+||++.. +..-++...|++.|...+...+.++.-|..++.+-+.+...+
T Consensus 194 kMi~aFEeLR~qAEn~r~EM~fKl----KE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl 259 (786)
T PF05483_consen 194 KMIAAFEELRVQAENDRQEMHFKL----KEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDL 259 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHH
Confidence 566777778777777777776542 233345566777777777777766666655544444333333
No 409
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.49 E-value=50 Score=37.70 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=16.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.++.+..|+...|+|-.--+..+..-|..+|.+++
T Consensus 967 ~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen 967 GLEEKAAELEKEYKEAEESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555444444444444444555444
No 410
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=66.42 E-value=1e+02 Score=29.88 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=12.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
+...+.|.++|..|...|++--.-+.+|.
T Consensus 108 ~~~~~~L~~d~~~L~~l~~~n~~~~~~L~ 136 (333)
T PF05816_consen 108 ESGQDELLRDNAMLDQLYEKNWEYYQELE 136 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443333333333
No 411
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=66.38 E-value=0.54 Score=38.18 Aligned_cols=45 Identities=22% Similarity=0.540 Sum_probs=14.5
Q ss_pred ccccCccccc-CCcEEecC--CccccHHHHHhhh---c-CCCCCCCCcccccc
Q 022126 2 RCNACWRELE-GRAISTTC--GHLLCTEDANKIL---S-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~C--GHiFC~~Ci~~~~---~-~~~~CPvC~~~l~~ 47 (302)
.|++|...+. .+..+..| ||+| ..|...++ + ..+.|++|+...-.
T Consensus 16 ~C~~C~~~i~~~~~~~~~C~~GH~w-~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 16 KCPICGAPIPFDDLDEAQCENGHVW-PRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp -------------SSEEE-TTS-EE-EB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred cccccccccccCCcCEeECCCCCEE-eeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 5999999875 34445556 9998 33443332 1 24789999987643
No 412
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=66.36 E-value=1.9e+02 Score=31.56 Aligned_cols=37 Identities=11% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQ 138 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~ 138 (302)
+.++.++..++..+++......+.++.|..++..+++
T Consensus 376 k~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 376 KALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444454544444445555555555555544
No 413
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.24 E-value=4.2 Score=36.35 Aligned_cols=15 Identities=27% Similarity=0.744 Sum_probs=12.3
Q ss_pred cCCCCCCCCcccccc
Q 022126 33 SNDAACPICDQVLSK 47 (302)
Q Consensus 33 ~~~~~CPvC~~~l~~ 47 (302)
+..+.||.|+..|..
T Consensus 134 ~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 134 EYGFRCPQCGEMLEE 148 (178)
T ss_pred hcCCcCCCCCCCCee
Confidence 358999999998764
No 414
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=66.19 E-value=63 Score=29.34 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=6.2
Q ss_pred hcCCChHHHHHHHH
Q 022126 66 MAGVSPQILMKSAY 79 (302)
Q Consensus 66 L~GlsP~~Ime~a~ 79 (302)
|-|--...++++.+
T Consensus 37 lgktavqk~Ld~La 50 (201)
T KOG4603|consen 37 LGKTAVQKTLDQLA 50 (201)
T ss_pred ccchHHHHHHHHHH
Confidence 34434444555443
No 415
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.16 E-value=1.6e+02 Score=34.76 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
...+..++.++.+++.+.+.++.+..+|+..+.+...++.+++.-...+...
T Consensus 368 eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~ 419 (1486)
T PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQA 419 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555555555555555554444444444444444333
No 416
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=66.16 E-value=66 Score=25.62 Aligned_cols=67 Identities=15% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+.+..+...|++.+..++..... ...++.+++.|..+...|.+.|....-...+|++.-..+..++.
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~--------~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRK--------RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444443222 12333444444444444444444444444555555444444443
No 417
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=66.13 E-value=49 Score=33.73 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
-+.++++.+..++...|.++..|++++..|.
T Consensus 38 ~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 38 ILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777777777766665444
No 418
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=65.94 E-value=89 Score=34.27 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
+...+.+....+++.+..|..+++.+++|+-.|+=+.+=|++.+
T Consensus 121 ~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 121 LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556677777777788888888877777776666555
No 419
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.91 E-value=2.5e+02 Score=32.19 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCCCC
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAIQPSNS---FYPRNDPD 196 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~~~a~~---~~~~~~~~ 196 (302)
+.+++.++.+.....+++..++.+.++++.+..+...++++++.-...++.+++++.+--.+..++ |+..+.|+
T Consensus 475 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~ 551 (1201)
T PF12128_consen 475 DKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPG 551 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCc
Confidence 333333333344444445555555555555555555455555555555555555554443334555 45555554
No 420
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=65.88 E-value=33 Score=27.46 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~q 163 (302)
.+.++..+|.+++....+++.+
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~ 61 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKL 61 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHH
Confidence 3334444444444444443333
No 421
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=65.87 E-value=1.1e+02 Score=28.30 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=15.4
Q ss_pred CCChHHHHHHhcCCChHHHHHHHHH
Q 022126 56 NPNDEWVNMAMAGVSPQILMKSAYR 80 (302)
Q Consensus 56 nPse~~Kt~vL~GlsP~~Ime~a~R 80 (302)
.|.-+.-..+|..++--++.+...+
T Consensus 104 ~p~G~KF~~lL~~fS~~VL~k~i~~ 128 (247)
T PF14661_consen 104 SPGGEKFIELLAHFSTFVLKKVIKR 128 (247)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHH
Confidence 6776655666666666665554444
No 422
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.85 E-value=55 Score=30.85 Aligned_cols=9 Identities=11% Similarity=0.338 Sum_probs=4.1
Q ss_pred HhcCCChHH
Q 022126 65 AMAGVSPQI 73 (302)
Q Consensus 65 vL~GlsP~~ 73 (302)
+|.-+++..
T Consensus 69 ~L~~ld~~~ 77 (334)
T TIGR00998 69 VLVRLDPTN 77 (334)
T ss_pred EEEEECchH
Confidence 344444443
No 423
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=65.75 E-value=64 Score=27.79 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+..++.++...++.....++.|++....+...+++.
T Consensus 46 Lq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 46 LQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444443333333
No 424
>PLN02189 cellulose synthase
Probab=65.55 E-value=4.4 Score=45.21 Aligned_cols=45 Identities=22% Similarity=0.532 Sum_probs=34.2
Q ss_pred ccccCccccc----CCcEE--ecCCccccHHHHHhhhc-CCCCCCCCccccc
Q 022126 2 RCNACWRELE----GRAIS--TTCGHLLCTEDANKILS-NDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~----~~~vv--T~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~ 46 (302)
.|.||.+.+. +.++| -.||--.|..|..-..+ ....||.|++...
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5999999874 33433 23888899999966544 4788999999886
No 425
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=65.52 E-value=26 Score=28.64 Aligned_cols=22 Identities=14% Similarity=0.148 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~ELq 151 (302)
++++.+++.+++.++.+|.+|.
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~ 54 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLF 54 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555553
No 426
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=65.39 E-value=1.1e+02 Score=33.93 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++++++.+.+..+...|+++.+--.+.++.|.++..++..+++
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555566665555566666655555555544
No 427
>PF04177 TAP42: TAP42-like family; InterPro: IPR007304 The TOR signalling pathway activates a cell-growth program in response to nutrients []. TIP41 interacts with TAP42 and negatively regulates the TOR signalling pathway [].; GO: 0009966 regulation of signal transduction; PDB: 3QC1_A 2V0P_A.
Probab=65.35 E-value=24 Score=34.31 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCcCCCCCchhhHhhh
Q 022126 257 GGNRRADARPAFGGGAANPSMTLRNL 282 (302)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (302)
++.|++-+..|||+|-+-|.|||--+
T Consensus 261 ~~~R~~~~~~VFgpg~~LPTMTveE~ 286 (340)
T PF04177_consen 261 TSTREQLQKKVFGPGHPLPTMTVEEF 286 (340)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHhcCCCCCCCcCcHHHH
Confidence 34676668889999988999998543
No 428
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=65.03 E-value=1e+02 Score=30.37 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=7.2
Q ss_pred HHHHHHhHHHHHHHHH
Q 022126 140 IESLSKDKQELQEKFS 155 (302)
Q Consensus 140 ~e~LrKkn~ELq~ky~ 155 (302)
-..+.-...|++++|.
T Consensus 282 fr~a~~~lse~~e~y~ 297 (384)
T KOG0972|consen 282 FRRATDTLSELREKYK 297 (384)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444445555554
No 429
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=65.00 E-value=63 Score=24.99 Aligned_cols=57 Identities=23% Similarity=0.465 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.....-++.+...+..++.+++.++++.+.+.+.|.++.++...++.|.++-+..+.
T Consensus 48 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~ 104 (123)
T PF02050_consen 48 RNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQ 104 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777888999999999999999999999999999999999988776654
No 430
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=64.98 E-value=47 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
+++.+++|..-+..++...+.|..+..+|
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333344444443333
No 431
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=64.86 E-value=1.3e+02 Score=28.76 Aligned_cols=8 Identities=50% Similarity=0.634 Sum_probs=3.7
Q ss_pred ChHHHHHH
Q 022126 70 SPQILMKS 77 (302)
Q Consensus 70 sP~~Ime~ 77 (302)
+|.++|-+
T Consensus 211 sPstL~a~ 218 (304)
T PF02646_consen 211 SPSTLMAL 218 (304)
T ss_pred cHHHHHHH
Confidence 45554433
No 432
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=64.78 E-value=4.7 Score=45.18 Aligned_cols=45 Identities=18% Similarity=0.502 Sum_probs=34.4
Q ss_pred ccccCccccc----CCcEE--ecCCccccHHHHHhhhc-CCCCCCCCccccc
Q 022126 2 RCNACWRELE----GRAIS--TTCGHLLCTEDANKILS-NDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~----~~~vv--T~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~ 46 (302)
.|.||.+.+. ++++| -.||--.|..|..-..+ ....||.|++...
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 5999999864 34544 34888899999965543 4788999999886
No 433
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=64.77 E-value=34 Score=35.90 Aligned_cols=53 Identities=23% Similarity=0.431 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
...++.+...+..++.+.++.+..+++|...++.-+.++.+..++|++|++.+
T Consensus 103 ~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~v 155 (570)
T COG4477 103 KHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDV 155 (570)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34455555667888999999999999999999888888999999999999884
No 434
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.69 E-value=1e+02 Score=32.28 Aligned_cols=25 Identities=8% Similarity=0.260 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDK 147 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn 147 (302)
..++..+..++..++.|++..|+-.
T Consensus 461 ~eeL~~a~~~i~~LqDEL~TTr~NY 485 (518)
T PF10212_consen 461 EEELKEANQNISRLQDELETTRRNY 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444455555555555555443
No 435
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=64.64 E-value=1.4e+02 Score=28.78 Aligned_cols=9 Identities=0% Similarity=0.128 Sum_probs=3.9
Q ss_pred HHHHHHHhh
Q 022126 74 LMKSAYRSV 82 (302)
Q Consensus 74 Ime~a~RAi 82 (302)
.|++.+.++
T Consensus 127 yLe~Lc~II 135 (269)
T PF05278_consen 127 YLECLCDII 135 (269)
T ss_pred HHHHHHHHH
Confidence 344444444
No 436
>PLN02195 cellulose synthase A
Probab=64.57 E-value=5.7 Score=44.12 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=34.9
Q ss_pred ccccCccccc----CCcEE--ecCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 2 RCNACWRELE----GRAIS--TTCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~----~~~vv--T~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
.|.||.+.+. ++++| -.||--.|..|..-.-+ ....||.|++...+
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCcccc
Confidence 5999999764 34544 35899999999965433 47889999999973
No 437
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=64.43 E-value=6.3 Score=24.89 Aligned_cols=37 Identities=22% Similarity=0.558 Sum_probs=25.3
Q ss_pred ccccCcccccCC-cEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGR-AISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~-~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
+|..|.+.+.+. .++..=|..|-..| +.|..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC--------CCCcccCCcCc
Confidence 588999988754 45555566665555 57888888764
No 438
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=64.38 E-value=1.3e+02 Score=28.41 Aligned_cols=16 Identities=31% Similarity=0.258 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 156 EKSRQKRKLDEMYDQL 171 (302)
Q Consensus 156 EKsRq~~qLqelYdkL 171 (302)
+|..++...+.-.+.+
T Consensus 186 ~~~~~~~~~~~~l~~l 201 (301)
T PF14362_consen 186 EKRAQLDAAQAELDTL 201 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 439
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=64.37 E-value=59 Score=32.64 Aligned_cols=32 Identities=22% Similarity=0.507 Sum_probs=19.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 141 ESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
+.+.++..|+..++++..+++.+++....+++
T Consensus 338 ~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~~ 369 (373)
T COG5019 338 QNLIEERKELNSKLEEIQKKLEDLEKRLEKLK 369 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55566666666666666666666665555554
No 440
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.32 E-value=67 Score=25.05 Aligned_cols=13 Identities=15% Similarity=0.412 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQE 139 (302)
Q Consensus 127 ~kl~~kl~~me~E 139 (302)
+.|+.|-+.+.+|
T Consensus 28 eELKEknn~l~~e 40 (79)
T COG3074 28 EELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHhhHhHHH
Confidence 3333333333333
No 441
>PRK00736 hypothetical protein; Provisional
Probab=64.19 E-value=47 Score=25.13 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
..++.++.-.+..++.|..-+...+++++.|+++..-|.+++++
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 442
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.14 E-value=1.7e+02 Score=29.64 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=23.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSR-QKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsR-q~~qLqelYdkLK~~~e~~~ 179 (302)
++|...||.+.....+|..=-+. ..+.++|.++..+.++.++.
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 55666666666555554322222 23556666667666665554
No 443
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.11 E-value=31 Score=28.82 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+++++.+-+......-.++...|++-+..+..+
T Consensus 75 ~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 75 ELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444
No 444
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.92 E-value=1.6e+02 Score=29.38 Aligned_cols=8 Identities=25% Similarity=0.679 Sum_probs=4.3
Q ss_pred cEEecCCc
Q 022126 14 AISTTCGH 21 (302)
Q Consensus 14 ~vvT~CGH 21 (302)
||||.=||
T Consensus 226 Pvis~IGH 233 (438)
T PRK00286 226 PVISAVGH 233 (438)
T ss_pred CEEEeccC
Confidence 55555555
No 445
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.83 E-value=59 Score=31.96 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFTE 117 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ 117 (302)
..++++++..+.+++.+
T Consensus 32 AEqLqer~q~LKkk~~e 48 (319)
T PF09789_consen 32 AEQLQERYQALKKKYRE 48 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 446
>PRK11546 zraP zinc resistance protein; Provisional
Probab=63.66 E-value=84 Score=27.46 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=2.5
Q ss_pred HHhHHHH
Q 022126 144 SKDKQEL 150 (302)
Q Consensus 144 rKkn~EL 150 (302)
.+|+.+|
T Consensus 95 ~kEI~~L 101 (143)
T PRK11546 95 AKEMENL 101 (143)
T ss_pred HHHHHHH
Confidence 3333333
No 447
>PF14282 FlxA: FlxA-like protein
Probab=63.53 E-value=42 Score=27.39 Aligned_cols=19 Identities=16% Similarity=0.406 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMM 136 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~m 136 (302)
.|..+..+|..|+.+|..+
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l 38 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQEL 38 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 448
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=63.40 E-value=2.3e+02 Score=30.89 Aligned_cols=53 Identities=17% Similarity=0.377 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
|+.++...++.+++++....|+...++.-..+..+|++-...|+.+++.++..
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333334444444444444444444444445577788888888886665544
No 449
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.31 E-value=91 Score=29.62 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=10.0
Q ss_pred cccCCCCCCcccCCCCC
Q 022126 231 RQNSSNSGPFDIATGSP 247 (302)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (302)
+-+...+-||.+++=.+
T Consensus 178 vdg~~~~~P~TIkAIGd 194 (247)
T COG3879 178 VDGRRLSAPYTIKAIGD 194 (247)
T ss_pred ECCeecCCCeEEEEecC
Confidence 33344477888875443
No 450
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=63.25 E-value=27 Score=34.62 Aligned_cols=52 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+..++++++..+..+...++++.....++.++..++.+-.+.|..+ +||..+
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr---sRRnNi 193 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR---SRRNNI 193 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh---ccCCce
Confidence 4455666666667777777777777776666666666655555555 666643
No 451
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=63.23 E-value=50 Score=33.95 Aligned_cols=51 Identities=22% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCCCCCCc--CccccCCCC-CCcccC----CCCCCCCCCCCCCCCCC---CCCCCCCCcCC
Q 022126 221 PGPREDIW--PARQNSSNS-GPFDIA----TGSPAKQPVIPVDGGNR---RADARPAFGGG 271 (302)
Q Consensus 221 ~~~~~~~~--~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 271 (302)
.||.+-.| .+--+.-+| .=|..+ ++|.-|.|...+-+... -+|+-|.||+=
T Consensus 164 ~Gp~apsa~iTl~PnRG~G~~~~~~~~g~~G~~Ii~~A~VsvPL~~~~tl~aG~ipd~~GY 224 (514)
T PF11336_consen 164 VGPMAPSAEITLAPNRGAGITLFDNSHGGNGNSIIHEASVSVPLSDTTTLIAGQIPDWGGY 224 (514)
T ss_pred CCccCCcceEEEccCCCCchhhhhcccCCcccceeeeeEEEeecCCceeEEeecccCccce
Confidence 68888888 333344455 566655 67888888855444444 67888999865
No 452
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=63.22 E-value=25 Score=25.35 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=8.8
Q ss_pred HHhHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSR 159 (302)
Q Consensus 144 rKkn~ELq~ky~EKsR 159 (302)
.++++||...|..|-+
T Consensus 25 E~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 25 EQEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3455556666765543
No 453
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.16 E-value=3.4 Score=44.90 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred cccCcccccC------CcEEecCCccccHHHHHhhhc------CCCCCCCCcccc
Q 022126 3 CNACWRELEG------RAISTTCGHLLCTEDANKILS------NDAACPICDQVL 45 (302)
Q Consensus 3 CNiC~~~l~~------~~vvT~CGHiFC~~Ci~~~~~------~~~~CPvC~~~l 45 (302)
|.+|+..+.. ...+.+|+|.||..||..|.. ..-.|+.|..-+
T Consensus 99 s~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 99 SPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 6678777653 233667999999999999853 245688888766
No 454
>PRK15396 murein lipoprotein; Provisional
Probab=63.15 E-value=55 Score=25.71 Aligned_cols=48 Identities=17% Similarity=0.394 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
+++++.++++.|..++..+..+...++-..+ ...+|-.|-.+.|.+.-
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~---~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ---AAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5555666666666666666666666666543 35677788777777653
No 455
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=63.10 E-value=46 Score=25.10 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKk 146 (302)
++...++.++++..+++.+|...+.+.++
T Consensus 7 ~l~~ie~~l~~~~~~i~~lE~~~~~~e~~ 35 (71)
T PF10779_consen 7 KLNRIETKLDNHEERIDKLEKRDAANEKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333333333
No 456
>PHA01750 hypothetical protein
Probab=63.09 E-value=64 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhHHHHH
Q 022126 136 MEQEIESLSKDKQELQ 151 (302)
Q Consensus 136 me~E~e~LrKkn~ELq 151 (302)
.+.|+++|+++++++.
T Consensus 40 V~~ELdNL~~ei~~~k 55 (75)
T PHA01750 40 VNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555554
No 457
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=62.87 E-value=62 Score=30.09 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
..||+..+.+.+.+.--|++||+.|.
T Consensus 187 l~eL~~~~~~~e~~~~TM~eL~~~l~ 212 (221)
T PF10376_consen 187 LYELQSEMSEEEGEKFTMGELIKRLG 212 (221)
T ss_pred HHHHHHHHhhccccCccHHHHHHHhC
Confidence 34555555554445555666666553
No 458
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=62.84 E-value=26 Score=27.82 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
+.++++-.+.++.|+|.++++=.+|+..++
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555554444
No 459
>PLN02436 cellulose synthase A
Probab=62.77 E-value=5.3 Score=44.74 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=34.7
Q ss_pred ccccCccccc----CCcEEe--cCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 2 RCNACWRELE----GRAIST--TCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~----~~~vvT--~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
.|.||.+.+. ++++|. .||--.|..|..-..+ ....||.|++....
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 5999999873 344433 3888899999966544 47889999998864
No 460
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.74 E-value=43 Score=34.21 Aligned_cols=13 Identities=46% Similarity=0.606 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhHH
Q 022126 136 MEQEIESLSKDKQ 148 (302)
Q Consensus 136 me~E~e~LrKkn~ 148 (302)
|++|+..|++++-
T Consensus 160 mekeI~elk~kl~ 172 (542)
T KOG0993|consen 160 MEKEINELKKKLA 172 (542)
T ss_pred HHHHHHHHHHHHH
Confidence 4445554544443
No 461
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=62.73 E-value=1.1e+02 Score=26.79 Aligned_cols=40 Identities=15% Similarity=0.399 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
|...-.....+-.+|++.-++=-.+..+|.++++.+..++
T Consensus 33 l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 33 LQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444333333444555666666665543
No 462
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=62.60 E-value=59 Score=32.27 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
|+.+++.+.....|-...|+||++++..+..+.+-|..+++.++
T Consensus 152 LKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elK 195 (405)
T KOG2010|consen 152 LKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELK 195 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444445555566655555555555555555443
No 463
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=62.55 E-value=95 Score=26.20 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.++.+.++-+.+.+.|+....||..++..+.--|+.|++
T Consensus 70 ~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~k 108 (120)
T PF14931_consen 70 LLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESLQK 108 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888899999999999999999999999864
No 464
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=62.50 E-value=11 Score=30.85 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 109 EAMQEKFTEKLEQVHTAY-QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 109 e~L~~~l~~ki~e~~s~~-~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.....+..-++++.+.+ +.+..-+..-..+...++.++..|.+.+.|+...+.-++.-...||.-
T Consensus 14 e~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v 80 (100)
T PF06428_consen 14 EQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTV 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555444 444444556666778888888888888888877655555555555544
No 465
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=62.50 E-value=53 Score=32.72 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIE---SLSKDKQELQEKFSEKSRQKRKLDEM 167 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e---~LrKkn~ELq~ky~EKsRq~~qLqel 167 (302)
..++.++++++.+++.++..++ ..+++..+|++.++--.+++.+++++
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~ 295 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEEL 295 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443322 23444555555555555555554443
No 466
>PRK10722 hypothetical protein; Provisional
Probab=62.44 E-value=1.1e+02 Score=29.09 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
...|++| .++.+.++|.|+..+.+|+..+.+-+||+..|+..=.+|
T Consensus 164 r~Ry~rL---Qq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqL 209 (247)
T PRK10722 164 RQRYQKL---QQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQL 209 (247)
T ss_pred HHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445554 346688899999999999999999999888887655555
No 467
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=62.42 E-value=2.5 Score=43.62 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
+.++++-++.+.+|+.+..++-.|| |.|||+..|++..+..|-|
T Consensus 422 ~RLr~QQ~eKd~qmksII~RL~~vE---eELrre~~~m~~~~~~kqr 465 (495)
T PF12004_consen 422 ERLRRQQEEKDSQMKSIISRLMAVE---EELRREHAEMQAVLDHKQR 465 (495)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHhhhhHHHHHHHHhhhhhhh---hhhhhhHHHHhcccccchH
Confidence 3444444455555555555555555 5666666666666655544
No 468
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=62.42 E-value=40 Score=26.61 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
.++.|-.++...+.|.+.|+.+|+=|
T Consensus 31 sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 31 SLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444445444444443
No 469
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.33 E-value=1.3e+02 Score=27.89 Aligned_cols=7 Identities=14% Similarity=0.691 Sum_probs=3.6
Q ss_pred ChHHHHH
Q 022126 70 SPQILMK 76 (302)
Q Consensus 70 sP~~Ime 76 (302)
+|..+++
T Consensus 24 Dp~~~l~ 30 (225)
T COG1842 24 DPEKMLE 30 (225)
T ss_pred CHHHHHH
Confidence 4555554
No 470
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=62.32 E-value=28 Score=27.27 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
.++.+.+.+..++..|...+++...++.+++
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 471
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=62.30 E-value=64 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESL 143 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~L 143 (302)
.+.+++..++.+..-+..|+.|...+
T Consensus 26 ~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 26 LIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444444444455555554444
No 472
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=62.22 E-value=72 Score=38.09 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+.....+++.|++.+.|++ .+.++|.++...++++++
T Consensus 103 ~~~~~~~~~~l~~~~se~~-------~qkr~l~~~le~~~~ele 139 (1822)
T KOG4674|consen 103 IDALKLENSQLRRAKSELQ-------EQKRQLMELLERQKAELE 139 (1822)
T ss_pred HHHhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443 344555555555555544
No 473
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=62.20 E-value=45 Score=30.74 Aligned_cols=66 Identities=23% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 106 QKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 106 eK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
++|+...+.++.|+.+.++.=..+.+.++.++.+.+.|..++.+.+.+|.+-...+-++-.-.+.+
T Consensus 140 d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~~ 205 (205)
T KOG1003|consen 140 EKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELENL 205 (205)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcC
No 474
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=62.14 E-value=1.3e+02 Score=28.08 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022126 126 YQKMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKk 146 (302)
+++.+++......+.+.-+.+
T Consensus 128 l~k~Kk~Y~~~~~e~e~Ar~k 148 (237)
T cd07657 128 VEKLKSEYQKLLEDYKAAKSK 148 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333433333
No 475
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=62.01 E-value=1.8e+02 Score=30.37 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 85 YLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 85 w~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
|...-..-...+...+...+-+-.+...+. +...+...++.+...++..+.+.+.+.....+|.+.=++-..+..+|
T Consensus 65 w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~---rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l 141 (560)
T PF06160_consen 65 WRQKWDEIVTKQLPEIEEQLFEAEEYADKY---RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEEL 141 (560)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022126 165 DEMYDQLRSEYESMKRS 181 (302)
Q Consensus 165 qelYdkLK~~~e~~~rs 181 (302)
.+.|..||+.+..-+-+
T Consensus 142 ~~~y~~lrk~ll~~~~~ 158 (560)
T PF06160_consen 142 KEKYRELRKELLAHSFS 158 (560)
T ss_pred HHHHHHHHHHHHHhhhh
No 476
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=61.92 E-value=55 Score=35.55 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
-|+.+++.|+..+.-+-+.|-||.-+...|.
T Consensus 908 ~~~~~ledL~qRy~a~LqmyGEk~Ee~EELr 938 (961)
T KOG4673|consen 908 GIKAELEDLRQRYAAALQMYGEKDEELEELR 938 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3455555555555555555555555444443
No 477
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.86 E-value=1.5e+02 Score=30.01 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 103 QCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQ 138 (302)
Q Consensus 103 ~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~ 138 (302)
.-+.+++.|++.+.+.++=--.+|..|++.++.|+.
T Consensus 255 EEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 255 EERYRYERLEEQLNDLTELHQNEIYNLKQELASMEE 290 (395)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445566667776666554444566777777766664
No 478
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.74 E-value=66 Score=24.11 Aligned_cols=30 Identities=40% Similarity=0.555 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
+++.++....+..+++.+++.|+++..|++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444445556666666666666554
No 479
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.68 E-value=36 Score=27.57 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKM 129 (302)
Q Consensus 116 ~~ki~e~~s~~~kl 129 (302)
++++..++..++++
T Consensus 93 ~~r~~~l~~~~~~l 106 (129)
T cd00890 93 KKRLETLEKQIEKL 106 (129)
T ss_pred HHHHHHHHHHHHHH
Confidence 33443333333333
No 480
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=61.65 E-value=2.3e+02 Score=31.16 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=0.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 88 QKELE-MQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 88 Q~~qe-~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
|...+ +.|.......++..| ..-...+..-..-+.++|..|...+...+.++..|.++++.|.+.++||.+++..+.+
T Consensus 342 qsdve~Lr~rle~k~~~l~kk-~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 342 QSDVEALRFRLEEKNSQLEKK-QAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred HHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH---------HHHHHHHHHHH
Q 022126 167 MYD---------QLRSEYESMKR 180 (302)
Q Consensus 167 lYd---------kLK~~~e~~~r 180 (302)
-+. .+..+++.+..
T Consensus 421 Rl~~~~d~~~~~~~~~~lEea~~ 443 (775)
T PF10174_consen 421 RLSSQADSSNEDEALETLEEALR 443 (775)
T ss_pred HHhccccccchHHHHHHHHHHHH
No 481
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.55 E-value=1.3e+02 Score=27.55 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 89 KELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 89 ~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
+......+..+.++.--+....+.+.+.+....+.++-.++.+..+.+..+.+.|.-+|..|+.....-.++..+|...-
T Consensus 53 ~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~ 132 (193)
T PF14662_consen 53 KSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEK 132 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhh
Q ss_pred HHHHHHH
Q 022126 169 DQLRSEY 175 (302)
Q Consensus 169 dkLK~~~ 175 (302)
..|+.++
T Consensus 133 ~~Lq~Ql 139 (193)
T PF14662_consen 133 ATLQRQL 139 (193)
T ss_pred HHHHHHH
No 482
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.54 E-value=74 Score=32.94 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
+..+..++.+...+..|+..+..|..|++..+.++..|+++....+-....|+.-.++++.+++.++
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
No 483
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=61.46 E-value=1.7 Score=32.10 Aligned_cols=26 Identities=23% Similarity=0.715 Sum_probs=0.0
Q ss_pred ccccCccccc---CCcEEecCCccccHHH
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~C 27 (302)
.|.+|.+.|+ ..-.=..||++||..|
T Consensus 11 ~C~~C~~~F~~~~rrhhCr~CG~~vC~~C 39 (69)
T PF01363_consen 11 NCMICGKKFSLFRRRHHCRNCGRVVCSSC 39 (69)
T ss_dssp B-TTT--B-BSSS-EEE-TTT--EEECCC
T ss_pred cCcCcCCcCCCceeeEccCCCCCEECCch
No 484
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=61.40 E-value=52 Score=31.69 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 98 NRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIE-SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 98 ~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e-~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
..++...+...+.-.+.-.+...+++.+++.+..++.++....+ .+.....++.+...+-..++.++.+-++.|+.+++
T Consensus 173 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 173 KSLFSKVKALFKKKEASDDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred hhhhHHhhhhhcCCcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Q ss_pred HHHHhhcCCCCCCCCCCCCC
Q 022126 177 SMKRSAIQPSNSFYPRNDPD 196 (302)
Q Consensus 177 ~~~rsa~~~a~~~~~~~~~~ 196 (302)
.. ++.++-.|++.+
T Consensus 253 ~~------~~~~~~~Rp~at 266 (276)
T PF05929_consen 253 ST------DANSQTQRPPAT 266 (276)
T ss_pred CC------CCCCCCCCCCCC
No 485
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=61.39 E-value=72 Score=26.58 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
.+.+-+++.+++.++..+-.++.+|+.++..+-.+|.+| ..+...|.+..+.+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L-------~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTAL-------RLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh
No 486
>PRK00295 hypothetical protein; Provisional
Probab=61.24 E-value=62 Score=24.45 Aligned_cols=46 Identities=11% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 106 QKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 106 eK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
...|.--.+.++.|+++|..+-+.++.+..|+.++..|..+..++.
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>PF09628 YvfG: YvfG protein; InterPro: IPR018590 Yvfg is a hypothetical protein of 71 residues expressed in some bacteria. The monomer consists of two parallel alpha helices, and the protein crystallises as a homo-dimer. ; PDB: 2GSV_A 2JS1_B.
Probab=61.20 E-value=8.7 Score=29.01 Aligned_cols=62 Identities=18% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 99 RIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 99 ~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++.+.+++. -++++.|+.+++-+++.|......+-. |++.| =.+--+..+.|+|.|++++++
T Consensus 7 ~~~~N~~q~-i~~N~~~~~ki~AmNaYYr~Vv~tlvq-----DqltK--------Na~vl~RiqHLdEAY~KV~~~ 68 (68)
T PF09628_consen 7 YFMENFKQH-IQMNQNYEDKIHAMNAYYRSVVSTLVQ-----DQLTK--------NAVVLKRIQHLDEAYQKVKRE 68 (68)
T ss_dssp HHHHHHHHH-HHC-SS-S-CCHHHHHHHHHHHHHHHH-----HSSS---------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHHHHHH-----HHHHh--------hHHHHHHHHHHHHHHHHHhcC
No 488
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=61.15 E-value=2e+02 Score=30.02 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 88 QKELEMQYKMNRIVAQCRQKCEAMQE-KFTEKLE--QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 88 Q~~qe~~yQ~~~l~~~lreK~e~L~~-~l~~ki~--e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
|++.--+-..-.|...|+++.+.|.+ +|.-.++ +++.-++.|+.-+...++.++.-|++++-||-.++--.-.|..|
T Consensus 351 Q~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~L 430 (527)
T PF15066_consen 351 QMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHL 430 (527)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHH
Q ss_pred HHHH-------------------------------HHHHHHHHHHHHhhcC
Q 022126 165 DEMY-------------------------------DQLRSEYESMKRSAIQ 184 (302)
Q Consensus 165 qelY-------------------------------dkLK~~~e~~~rsa~~ 184 (302)
||-| ..||.++|.+-.||.+
T Consensus 431 QEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 431 QERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 489
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=61.03 E-value=47 Score=32.67 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 99 RIVAQCRQKCEAMQEKFTEKLEQV--------HTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 99 ~l~~~lreK~e~L~~~l~~ki~e~--------~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
++...+....-.+...+.+.+++. .++++.+.++|.++++++..|+|.+.+|..+
T Consensus 256 k~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 256 KVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 490
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.01 E-value=48 Score=33.44 Aligned_cols=62 Identities=23% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK------FSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k------y~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
..++..+++.+..++..++.+++.+++....|.+. -.++..++.++.+.|..|.++++.+..
T Consensus 329 ~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~ 396 (451)
T PF03961_consen 329 RPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKE 396 (451)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.92 E-value=1.2e+02 Score=34.24 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFT---EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 102 ~~lreK~e~L~~~l~---~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
..+...++.++..++ +.+.+++.-+...+.++.++.++...++++..||+.+=.+.-|+-.+|+-+.+.++.-+++.
T Consensus 414 ~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~ 493 (1200)
T KOG0964|consen 414 NILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRA 493 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 022126 179 KR 180 (302)
Q Consensus 179 ~r 180 (302)
..
T Consensus 494 ~~ 495 (1200)
T KOG0964|consen 494 EK 495 (1200)
T ss_pred HH
No 492
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=60.88 E-value=66 Score=23.84 Aligned_cols=52 Identities=31% Similarity=0.491 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDK--------------QELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn--------------~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
++..++.+|.+++..++.+++.+.++. +.-.+++.+-..++.+|++....|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 493
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.74 E-value=1.1e+02 Score=27.81 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF--SEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky--~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.+-+..+...+..+..|+++++.++....-++.+|+..+ +|--.+.++|.+.-.--+.++++++.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=60.47 E-value=1.4e+02 Score=27.30 Aligned_cols=83 Identities=8% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 98 NRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 98 ~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
+.+....-...+.+.+.+.+....+...+.+++..+..+..+++..+++.+.+-+..+....++.+....-+.-+.++++
T Consensus 86 ~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK 165 (251)
T cd07653 86 ENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEK 165 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHH
Q ss_pred HHH
Q 022126 178 MKR 180 (302)
Q Consensus 178 ~~r 180 (302)
++.
T Consensus 166 ~~~ 168 (251)
T cd07653 166 AKA 168 (251)
T ss_pred HHH
No 495
>PRK14155 heat shock protein GrpE; Provisional
Probab=60.42 E-value=72 Score=29.38 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK--RKLDEMYDQLRS 173 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~--~qLqelYdkLK~ 173 (302)
+.+.+++.+++.++..++.++..+.+|.+++||..+.=.+...+-..+. ..|-..+|.|.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLer 78 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGR 78 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHH
No 496
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.39 E-value=49 Score=27.73 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 108 CEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 108 ~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
.+...+.+++++..++..++++...+..+..+.+.+....++|+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.30 E-value=92 Score=28.79 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK--RKLDEMYDQLRS 173 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~--~qLqelYdkLK~ 173 (302)
..+..++.++..+++.++.++.-+.+|.+++||..+.-.+...+...+. ..|-..+|.|.+
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeR 117 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIH 117 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
No 498
>PRK04325 hypothetical protein; Provisional
Probab=60.19 E-value=60 Score=24.94 Aligned_cols=45 Identities=4% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 106 QKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 106 eK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
...|..-.+.++.|+++|..+-+.++.+..|+.++..|..+..++
T Consensus 12 ~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 12 TELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=60.16 E-value=41 Score=29.36 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
+++.+++-+++++.+++...+.+...+.+|...+.+...+.++++
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.82 E-value=3.4e+02 Score=31.69 Aligned_cols=109 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH----HH
Q 022126 72 QILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTA---------YQKMAKRCQMM----EQ 138 (302)
Q Consensus 72 ~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~---------~~kl~~kl~~m----e~ 138 (302)
+++-|+..+|+.=.+--.+|+...|++++ +|-++-..+.+.+.+.-.-+..+ +..|+..+..+ |+
T Consensus 1096 eel~~a~q~am~ghar~~e~ya~l~ek~~--~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~erek 1173 (1320)
T PLN03188 1096 EELKEAMQMAMEGHARMLEQYADLEEKHI--QLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREK 1173 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 139 EIESLSKDKQELQEKFSE------------------------KSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~E------------------------KsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
|.+-|+++|.-||-.|+| ..++....+.--++++++++++++.+
T Consensus 1174 er~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh 1241 (1320)
T PLN03188 1174 ERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKH 1241 (1320)
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!