Query 022126
Match_columns 302
No_of_seqs 226 out of 656
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 14:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.2 6.8E-12 2.3E-16 94.1 4.5 51 1-52 9-60 (78)
2 2kr4_A Ubiquitin conjugation f 99.2 1.1E-11 3.8E-16 95.8 3.8 51 1-52 15-65 (85)
3 2djb_A Polycomb group ring fin 99.2 1.3E-11 4.4E-16 91.6 3.9 51 1-52 16-67 (72)
4 2kre_A Ubiquitin conjugation f 99.2 1.6E-11 5.4E-16 98.1 4.6 51 1-52 30-80 (100)
5 2ecy_A TNF receptor-associated 99.2 1.3E-11 4.3E-16 90.0 3.4 49 1-50 16-65 (66)
6 3ng2_A RNF4, snurf, ring finge 99.2 1.5E-11 5.1E-16 90.1 3.6 53 1-53 11-69 (71)
7 2xeu_A Ring finger protein 4; 99.1 1.6E-11 5.4E-16 88.0 3.1 53 1-53 4-62 (64)
8 3lrq_A E3 ubiquitin-protein li 99.1 2E-11 6.9E-16 96.5 3.8 51 1-52 23-75 (100)
9 4ayc_A E3 ubiquitin-protein li 99.1 2.7E-11 9.3E-16 100.9 4.3 46 1-47 54-99 (138)
10 2ysl_A Tripartite motif-contai 99.1 4E-11 1.4E-15 88.4 4.7 49 1-50 21-72 (73)
11 1wgm_A Ubiquitin conjugation f 99.1 4.3E-11 1.5E-15 95.2 4.5 51 1-52 23-74 (98)
12 2d8t_A Dactylidin, ring finger 99.1 3.4E-11 1.2E-15 89.1 3.3 49 1-50 16-64 (71)
13 2ecw_A Tripartite motif-contai 99.1 4.9E-11 1.7E-15 89.6 4.2 51 1-52 20-76 (85)
14 2csy_A Zinc finger protein 183 99.1 4.5E-11 1.5E-15 90.5 3.8 45 1-46 16-60 (81)
15 2egp_A Tripartite motif-contai 99.1 3.1E-11 1.1E-15 90.2 2.4 50 1-51 13-69 (79)
16 1g25_A CDK-activating kinase a 99.1 6.9E-11 2.4E-15 85.8 4.1 52 1-52 4-60 (65)
17 2yur_A Retinoblastoma-binding 99.1 5.7E-11 2E-15 88.8 3.5 48 1-49 16-66 (74)
18 3fl2_A E3 ubiquitin-protein li 99.1 9.9E-11 3.4E-15 95.4 5.0 46 1-47 53-99 (124)
19 2y43_A E3 ubiquitin-protein li 99.1 8.8E-11 3E-15 92.0 4.4 49 1-50 23-72 (99)
20 2ct2_A Tripartite motif protei 99.1 1.1E-10 3.7E-15 88.8 4.4 50 1-50 16-71 (88)
21 2c2l_A CHIP, carboxy terminus 99.0 5.5E-11 1.9E-15 107.3 2.9 51 1-52 209-260 (281)
22 2ecv_A Tripartite motif-contai 99.0 7.3E-11 2.5E-15 88.7 2.9 51 1-52 20-76 (85)
23 1jm7_A BRCA1, breast cancer ty 99.0 9.9E-11 3.4E-15 92.9 3.5 51 1-52 22-75 (112)
24 2ckl_A Polycomb group ring fin 99.0 2.7E-10 9.3E-15 90.7 5.8 47 1-48 16-63 (108)
25 2ea6_A Ring finger protein 4; 99.0 9.3E-11 3.2E-15 85.1 2.8 47 1-47 16-68 (69)
26 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.3E-15 89.7 3.7 45 1-46 14-61 (92)
27 2ect_A Ring finger protein 126 99.0 1.3E-10 4.3E-15 87.1 3.3 52 1-52 16-69 (78)
28 4ap4_A E3 ubiquitin ligase RNF 99.0 1.9E-10 6.3E-15 93.0 4.0 57 1-58 8-71 (133)
29 1z6u_A NP95-like ring finger p 99.0 2.7E-10 9.4E-15 96.8 5.0 47 1-48 79-126 (150)
30 2ysj_A Tripartite motif-contai 99.0 2.6E-10 8.9E-15 82.1 4.0 40 1-41 21-63 (63)
31 2ecn_A Ring finger protein 141 99.0 1.4E-10 4.8E-15 85.1 2.5 47 1-49 16-62 (70)
32 1rmd_A RAG1; V(D)J recombinati 99.0 2.6E-10 9.1E-15 91.7 4.3 51 1-52 24-75 (116)
33 1chc_A Equine herpes virus-1 r 98.9 2.4E-10 8.4E-15 83.2 2.6 46 2-47 7-52 (68)
34 3hct_A TNF receptor-associated 98.9 2.4E-10 8.2E-15 92.6 2.8 50 1-51 19-69 (118)
35 2kiz_A E3 ubiquitin-protein li 98.9 4.6E-10 1.6E-14 82.1 4.1 46 2-47 16-63 (69)
36 2yu4_A E3 SUMO-protein ligase 98.9 2.9E-10 9.9E-15 89.2 2.9 51 1-52 8-68 (94)
37 2ecm_A Ring finger and CHY zin 98.9 3.5E-10 1.2E-14 78.9 3.0 45 2-46 7-54 (55)
38 2ckl_B Ubiquitin ligase protei 98.9 4.5E-10 1.5E-14 95.8 3.6 46 1-47 55-102 (165)
39 2f42_A STIP1 homology and U-bo 98.9 4.6E-10 1.6E-14 98.7 3.5 51 1-52 107-158 (179)
40 3l11_A E3 ubiquitin-protein li 98.9 2.6E-10 8.7E-15 91.7 1.6 46 1-47 16-62 (115)
41 2ecj_A Tripartite motif-contai 98.9 6.4E-10 2.2E-14 78.3 3.2 40 1-41 16-58 (58)
42 1e4u_A Transcriptional repress 98.9 1.1E-09 3.8E-14 83.7 4.7 56 1-56 12-71 (78)
43 1jm7_B BARD1, BRCA1-associated 98.9 3.6E-10 1.2E-14 91.4 2.0 47 1-50 23-70 (117)
44 2ep4_A Ring finger protein 24; 98.9 1.5E-09 5E-14 80.4 4.0 46 2-47 17-64 (74)
45 1iym_A EL5; ring-H2 finger, ub 98.8 1.3E-09 4.5E-14 76.1 3.3 46 1-46 6-54 (55)
46 2bay_A PRE-mRNA splicing facto 98.8 1.3E-09 4.5E-14 79.6 3.3 54 1-55 4-58 (61)
47 2l0b_A E3 ubiquitin-protein li 98.8 1.5E-09 5.1E-14 84.3 3.7 45 2-46 42-88 (91)
48 4ap4_A E3 ubiquitin ligase RNF 98.8 1.2E-09 4.2E-14 88.1 2.6 53 1-53 73-131 (133)
49 1x4j_A Ring finger protein 38; 98.8 1.4E-09 4.8E-14 81.0 2.4 46 2-47 25-72 (75)
50 3knv_A TNF receptor-associated 98.8 1.6E-09 5.6E-14 91.2 2.3 46 1-47 32-78 (141)
51 1v87_A Deltex protein 2; ring- 98.8 3E-09 1E-13 85.0 3.7 46 2-47 27-94 (114)
52 3hcs_A TNF receptor-associated 98.8 2.5E-09 8.4E-14 91.5 2.8 51 1-52 19-70 (170)
53 2ecl_A Ring-box protein 2; RNF 98.7 4.9E-09 1.7E-13 79.9 3.7 47 2-48 17-77 (81)
54 1bor_A Transcription factor PM 98.7 1.7E-09 5.9E-14 76.9 0.6 43 1-47 7-49 (56)
55 3htk_C E3 SUMO-protein ligase 98.7 5.2E-09 1.8E-13 97.1 2.8 51 1-52 182-237 (267)
56 4ic3_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 75.9 3.2 42 1-47 25-67 (74)
57 2ecg_A Baculoviral IAP repeat- 98.5 3.6E-08 1.2E-12 73.8 3.1 41 2-47 27-68 (75)
58 2vje_B MDM4 protein; proto-onc 98.5 5.8E-08 2E-12 70.7 3.2 45 2-47 9-56 (63)
59 3dpl_R Ring-box protein 1; ubi 98.5 9.1E-08 3.1E-12 77.1 4.4 45 2-46 39-100 (106)
60 2vje_A E3 ubiquitin-protein li 98.5 6.4E-08 2.2E-12 70.7 3.1 44 2-46 10-56 (64)
61 1wim_A KIAA0161 protein; ring 98.4 5.8E-08 2E-12 75.5 0.3 44 1-44 6-61 (94)
62 2yho_A E3 ubiquitin-protein li 98.3 1.9E-07 6.7E-12 71.0 3.0 42 2-48 20-62 (79)
63 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 77.3 0.0 45 2-46 50-111 (117)
64 2ea5_A Cell growth regulator w 98.2 5.8E-07 2E-11 66.6 2.6 41 2-47 17-58 (68)
65 3vk6_A E3 ubiquitin-protein li 97.8 8E-06 2.7E-10 65.5 3.3 46 2-47 3-49 (101)
66 2d8s_A Cellular modulator of i 97.8 1.1E-05 3.6E-10 61.8 2.7 46 2-47 17-70 (80)
67 2ct0_A Non-SMC element 1 homol 97.6 5.7E-05 2E-09 57.2 4.0 46 2-47 17-64 (74)
68 2ko5_A Ring finger protein Z; 96.7 0.0011 3.8E-08 52.6 3.9 52 1-54 29-80 (99)
69 3i00_A HIP-I, huntingtin-inter 96.1 0.026 9E-07 46.4 8.7 69 111-179 41-119 (120)
70 2jee_A YIIU; FTSZ, septum, coi 95.7 0.13 4.5E-06 39.6 10.5 56 121-176 10-72 (81)
71 3mq7_A Bone marrow stromal ant 95.1 0.13 4.5E-06 42.0 9.2 28 147-174 73-100 (121)
72 1vyx_A ORF K3, K3RING; zinc-bi 94.9 0.014 4.7E-07 42.0 2.7 44 2-46 8-58 (60)
73 4h22_A Leucine-rich repeat fli 94.8 0.22 7.6E-06 39.9 9.5 45 136-180 35-79 (103)
74 3u1c_A Tropomyosin alpha-1 cha 94.7 0.94 3.2E-05 35.7 13.1 71 106-176 23-96 (101)
75 2jun_A Midline-1; B-BOX, TRIM, 94.7 0.012 4.1E-07 45.5 1.8 31 1-31 4-36 (101)
76 3oja_B Anopheles plasmodium-re 94.5 0.79 2.7E-05 45.1 14.9 64 118-181 517-580 (597)
77 3mq9_A Bone marrow stromal ant 94.3 2 6.8E-05 41.3 17.1 18 65-82 364-382 (471)
78 1deq_A Fibrinogen (alpha chain 94.1 3.1 0.00011 40.2 17.6 20 166-185 179-198 (390)
79 2v71_A Nuclear distribution pr 93.8 2.7 9.1E-05 37.0 15.2 48 103-150 35-82 (189)
80 3hnw_A Uncharacterized protein 93.7 0.69 2.3E-05 38.6 10.9 48 127-174 78-125 (138)
81 3ol1_A Vimentin; structural ge 93.0 0.91 3.1E-05 36.8 10.3 43 134-176 65-107 (119)
82 3u59_A Tropomyosin beta chain; 92.7 2.8 9.6E-05 32.8 12.4 61 116-176 36-96 (101)
83 3hnw_A Uncharacterized protein 92.5 1.1 3.7E-05 37.4 10.3 50 117-166 82-131 (138)
84 1ic2_A Tropomyosin alpha chain 92.3 2.5 8.6E-05 31.8 11.3 42 118-159 35-76 (81)
85 1m3v_A FLIN4, fusion of the LI 91.9 0.084 2.9E-06 42.3 2.7 52 1-52 33-86 (122)
86 1c1g_A Tropomyosin; contractIl 91.9 1.9 6.6E-05 36.4 11.5 60 117-176 34-93 (284)
87 2v71_A Nuclear distribution pr 91.7 3.3 0.00011 36.3 12.9 18 159-176 123-140 (189)
88 4h22_A Leucine-rich repeat fli 91.6 3.5 0.00012 32.9 11.8 64 113-176 19-82 (103)
89 1ic2_A Tropomyosin alpha chain 91.6 0.69 2.4E-05 34.9 7.4 43 133-175 22-64 (81)
90 3ghg_A Fibrinogen alpha chain; 91.6 1.6 5.5E-05 43.9 11.9 58 128-185 114-195 (562)
91 4etp_A Kinesin-like protein KA 91.4 0.56 1.9E-05 45.4 8.4 57 118-174 4-60 (403)
92 2xqn_T Testin, TESS; metal-bin 91.3 0.21 7E-06 39.7 4.5 46 1-48 31-76 (126)
93 1c1g_A Tropomyosin; contractIl 91.2 4.9 0.00017 33.9 13.4 11 121-131 45-55 (284)
94 3vkg_A Dynein heavy chain, cyt 91.1 0.92 3.2E-05 54.4 11.2 61 118-178 2015-2075(3245)
95 1go4_E MAD1 (mitotic arrest de 90.3 2.6 8.9E-05 33.5 9.8 57 125-181 13-90 (100)
96 2v66_B Nuclear distribution pr 90.2 5.6 0.00019 32.1 11.9 8 162-169 80-87 (111)
97 3o0z_A RHO-associated protein 90.1 5.6 0.00019 34.3 12.6 59 113-171 37-95 (168)
98 3oja_A Leucine-rich immune mol 90.0 3.9 0.00013 39.4 13.0 9 143-151 447-455 (487)
99 3t98_B Nucleoporin NUP58/NUP45 89.9 4.5 0.00015 31.6 10.8 73 111-183 13-89 (93)
100 3oja_B Anopheles plasmodium-re 89.8 11 0.00039 36.7 16.5 30 126-155 511-540 (597)
101 3na7_A HP0958; flagellar bioge 89.8 3.4 0.00012 37.1 11.6 54 123-176 52-107 (256)
102 2cup_A Skeletal muscle LIM-pro 89.7 0.24 8.3E-06 37.7 3.4 46 1-48 34-79 (101)
103 3iox_A AGI/II, PA; alpha helix 89.5 7 0.00024 39.0 14.3 45 131-175 41-85 (497)
104 2v66_B Nuclear distribution pr 89.5 7.2 0.00025 31.4 13.3 56 121-176 32-87 (111)
105 3nmd_A CGMP dependent protein 89.4 1.1 3.7E-05 33.7 6.6 31 143-173 38-68 (72)
106 2wt7_B Transcription factor MA 88.9 3.9 0.00013 31.9 9.7 15 62-76 11-25 (90)
107 3m62_A Ubiquitin conjugation f 88.9 0.27 9.2E-06 52.8 4.0 51 1-52 892-943 (968)
108 3a7p_A Autophagy protein 16; c 88.6 2.8 9.4E-05 35.7 9.3 35 140-174 98-132 (152)
109 2xjy_A Rhombotin-2; oncoprotei 88.2 0.33 1.1E-05 38.7 3.4 49 1-49 30-80 (131)
110 3a7p_A Autophagy protein 16; c 88.2 4.2 0.00014 34.6 10.2 58 102-159 78-138 (152)
111 3swk_A Vimentin; cytoskeleton, 87.8 3 0.0001 32.0 8.4 52 125-176 8-59 (86)
112 1rut_X Flinc4, fusion protein 87.7 0.25 8.4E-06 42.4 2.4 48 1-48 33-82 (188)
113 3q8t_A Beclin-1; autophagy, AT 87.2 9 0.00031 29.8 12.7 67 112-178 20-86 (96)
114 2jee_A YIIU; FTSZ, septum, coi 86.6 9.1 0.00031 29.2 10.6 13 140-152 50-62 (81)
115 1x79_B RAB GTPase binding effe 86.0 5.9 0.0002 32.0 9.5 34 141-174 41-74 (112)
116 3ghg_A Fibrinogen alpha chain; 85.2 15 0.0005 37.0 13.8 16 103-118 114-129 (562)
117 3m91_A Proteasome-associated A 84.9 4.2 0.00014 28.5 7.1 40 132-171 10-49 (51)
118 3i00_A HIP-I, huntingtin-inter 84.3 15 0.00052 29.8 11.5 45 138-182 40-84 (120)
119 3q0x_A Centriole protein; cent 84.3 5.5 0.00019 35.9 9.5 48 127-174 174-221 (228)
120 2yy0_A C-MYC-binding protein; 84.3 1.7 5.9E-05 30.5 4.9 25 127-151 22-46 (53)
121 1m1j_B Fibrinogen beta chain; 84.2 34 0.0012 33.8 15.9 17 160-176 169-185 (464)
122 3vmx_A Voltage-gated hydrogen 83.7 5.2 0.00018 27.7 7.0 38 118-155 5-42 (48)
123 1iml_A CRIP, cysteine rich int 83.0 0.97 3.3E-05 32.6 3.4 43 1-45 28-71 (76)
124 1wfk_A Zinc finger, FYVE domai 82.9 0.021 7.1E-07 44.3 -6.1 67 2-68 11-88 (88)
125 2dfs_A Myosin-5A; myosin-V, in 82.8 14 0.00048 40.1 13.6 22 133-154 1025-1046(1080)
126 3htk_A Structural maintenance 82.7 9.9 0.00034 26.4 8.6 26 147-172 28-53 (60)
127 1weo_A Cellulose synthase, cat 82.4 1.1 3.9E-05 35.0 3.7 46 2-47 18-70 (93)
128 1b8t_A Protein (CRP1); LIM dom 82.2 1.4 4.8E-05 37.6 4.6 33 1-33 35-67 (192)
129 1x61_A Thyroid receptor intera 82.2 1.5 5E-05 31.2 4.0 39 2-48 7-46 (72)
130 1jcd_A Major outer membrane li 82.2 9.5 0.00032 26.8 8.0 46 118-166 5-50 (52)
131 3o0z_A RHO-associated protein 81.9 15 0.0005 31.7 10.8 60 117-176 55-114 (168)
132 2jtn_A LIM domain-binding prot 81.6 1.4 4.8E-05 37.3 4.3 46 1-49 88-133 (182)
133 2efr_A General control protein 81.5 23 0.0008 30.0 12.4 38 118-155 85-122 (155)
134 3l4q_C Phosphatidylinositol 3- 81.4 4.5 0.00015 35.0 7.5 40 138-177 10-49 (170)
135 1p9i_A Cortexillin I/GCN4 hybr 81.3 1.3 4.5E-05 27.3 2.9 27 127-153 2-28 (31)
136 2rgt_A Fusion of LIM/homeobox 81.2 1.2 4.2E-05 37.2 3.8 46 1-49 34-79 (169)
137 3cl3_D NF-kappa-B essential mo 81.1 4.5 0.00015 33.5 7.0 50 122-178 53-102 (130)
138 1deq_A Fibrinogen (alpha chain 81.0 27 0.00093 33.7 13.4 16 117-132 113-128 (390)
139 1deb_A APC protein, adenomatou 81.0 11 0.00039 26.3 7.9 38 138-175 10-47 (54)
140 3u1c_A Tropomyosin alpha-1 cha 80.8 18 0.00062 28.2 11.6 39 117-155 23-61 (101)
141 4dzo_A Mitotic spindle assembl 80.4 2.8 9.5E-05 34.3 5.5 34 132-165 5-38 (123)
142 2oto_A M protein; helical coil 80.4 24 0.00081 29.3 12.6 28 127-154 53-80 (155)
143 1m1j_B Fibrinogen beta chain; 80.2 16 0.00054 36.2 11.9 11 226-236 252-262 (464)
144 2efr_A General control protein 80.2 26 0.0009 29.7 13.6 64 107-170 67-130 (155)
145 3u59_A Tropomyosin beta chain; 80.1 19 0.00064 27.9 11.5 46 117-162 23-68 (101)
146 3tul_A Cell invasion protein S 79.6 11 0.00039 31.9 9.1 45 135-179 73-120 (158)
147 2d8x_A Protein pinch; LIM doma 79.6 1.3 4.4E-05 31.3 2.9 39 2-49 7-45 (70)
148 3s9g_A Protein hexim1; cyclin 79.3 20 0.00067 28.4 9.8 19 158-176 64-82 (104)
149 1ci6_A Transcription factor AT 78.9 7.9 0.00027 27.8 7.0 31 134-164 26-56 (63)
150 3gn4_A Myosin-VI; unconvention 78.8 11 0.00036 31.9 8.7 102 76-181 40-143 (148)
151 3i2d_A E3 SUMO-protein ligase 78.7 1.2 3.9E-05 43.1 3.1 51 1-52 250-305 (371)
152 1x4l_A Skeletal muscle LIM-pro 78.7 1.2 4.2E-05 31.6 2.6 40 2-49 7-49 (72)
153 2yy0_A C-MYC-binding protein; 78.5 2.6 9E-05 29.6 4.2 19 138-156 19-37 (53)
154 1dh3_A Transcription factor CR 78.4 1.2 4.2E-05 31.4 2.5 30 127-156 25-54 (55)
155 3trt_A Vimentin; cytoskeleton, 78.4 17 0.00059 26.5 10.4 13 112-124 30-42 (77)
156 3viq_B Mating-type switching p 78.2 2.9 9.8E-05 32.3 4.6 46 129-174 6-56 (85)
157 1wt6_A Myotonin-protein kinase 78.1 21 0.0007 27.3 10.3 41 138-178 31-71 (81)
158 3mq7_A Bone marrow stromal ant 77.9 27 0.00091 28.5 13.1 38 117-154 71-108 (121)
159 1nlw_A MAD protein, MAX dimeri 77.9 6.8 0.00023 29.5 6.6 38 118-155 41-78 (80)
160 1nkp_B MAX protein, MYC proto- 77.7 6.8 0.00023 29.2 6.6 35 121-155 44-78 (83)
161 3u06_A Protein claret segregat 77.5 7.4 0.00025 37.7 8.5 54 121-174 7-60 (412)
162 1hjb_A Ccaat/enhancer binding 77.3 7 0.00024 30.1 6.7 40 134-173 39-78 (87)
163 2xdj_A Uncharacterized protein 77.3 17 0.00057 27.7 8.7 44 128-174 24-67 (83)
164 2cs3_A Protein C14ORF4, MY039 77.2 1.1 3.9E-05 34.5 2.1 43 1-43 16-66 (93)
165 3vkg_A Dynein heavy chain, cyt 77.2 21 0.00071 43.2 13.5 40 133-172 2016-2055(3245)
166 4fo9_A E3 SUMO-protein ligase 77.1 1.4 4.7E-05 42.4 3.1 52 1-52 216-271 (360)
167 1gk4_A Vimentin; intermediate 76.8 21 0.00073 26.8 9.6 24 123-146 25-48 (84)
168 2ve7_A Kinetochore protein HEC 76.2 4.5 0.00015 37.8 6.3 28 125-152 186-213 (315)
169 2wt7_A Proto-oncogene protein 76.2 10 0.00035 27.1 6.9 23 133-155 25-47 (63)
170 1nfn_A Apolipoprotein E3; lipi 75.8 7 0.00024 33.9 7.1 23 136-158 104-126 (191)
171 3cve_A Homer protein homolog 1 75.7 22 0.00076 26.5 9.9 47 122-171 19-65 (72)
172 3k1l_B Fancl; UBC, ring, RWD, 75.6 0.71 2.4E-05 44.5 0.7 32 2-33 310-348 (381)
173 2dar_A PDZ and LIM domain prot 75.6 1.9 6.3E-05 32.3 2.9 35 3-46 28-62 (90)
174 1ci6_A Transcription factor AT 75.5 19 0.00067 25.7 8.3 37 120-156 26-62 (63)
175 1xaw_A Occludin; coiled-coil, 75.5 27 0.00094 29.1 10.3 22 122-143 64-85 (140)
176 1z2q_A LM5-1; membrane protein 75.4 0.16 5.6E-06 38.6 -3.1 46 2-47 23-79 (84)
177 1ik9_A DNA repair protein XRCC 75.3 32 0.0011 30.4 11.4 24 151-174 181-205 (213)
178 1gd2_E Transcription factor PA 75.3 7.7 0.00026 28.7 6.2 34 122-155 34-67 (70)
179 4etp_A Kinesin-like protein KA 75.0 9.1 0.00031 36.8 8.4 57 124-180 3-59 (403)
180 2b5u_A Colicin E3; high resolu 74.9 18 0.00062 36.2 10.4 40 139-178 322-361 (551)
181 1nyp_A Pinch protein; LIM doma 74.8 1.9 6.5E-05 30.1 2.6 40 2-50 7-46 (66)
182 2cur_A Skeletal muscle LIM-pro 74.6 2.7 9.2E-05 29.5 3.4 37 2-47 7-43 (69)
183 1gmj_A ATPase inhibitor; coile 74.4 27 0.00093 26.8 9.7 61 81-152 19-79 (84)
184 2xdj_A Uncharacterized protein 73.9 27 0.00092 26.5 10.5 34 133-166 22-55 (83)
185 3efg_A Protein SLYX homolog; x 73.6 9.8 0.00033 28.6 6.5 32 144-175 27-58 (78)
186 3htk_A Structural maintenance 73.6 12 0.00042 25.9 6.7 19 127-145 29-47 (60)
187 2d8z_A Four and A half LIM dom 73.4 2.4 8.3E-05 29.8 2.9 37 2-47 7-43 (70)
188 1l8d_A DNA double-strand break 72.9 30 0.001 26.6 10.5 23 139-161 72-94 (112)
189 1wyh_A SLIM 2, skeletal muscle 72.9 2.7 9.2E-05 29.6 3.1 38 2-47 7-45 (72)
190 2wvr_A Geminin; DNA replicatio 72.8 31 0.0011 30.5 10.4 42 127-172 118-159 (209)
191 1m1j_C Fibrinogen gamma chain; 71.9 48 0.0016 32.1 12.6 21 145-165 105-125 (409)
192 1t2k_D Cyclic-AMP-dependent tr 71.7 23 0.00079 24.9 7.9 20 132-151 37-56 (61)
193 1x4k_A Skeletal muscle LIM-pro 71.4 3 0.0001 29.4 3.0 39 2-48 7-46 (72)
194 1y02_A CARP2, FYVE-ring finger 71.2 0.29 1E-05 40.0 -2.7 43 2-44 21-66 (120)
195 2wt7_A Proto-oncogene protein 70.8 17 0.00058 25.9 7.0 34 121-154 27-60 (63)
196 1m1j_C Fibrinogen gamma chain; 70.6 75 0.0026 30.8 13.6 33 146-178 92-124 (409)
197 1uii_A Geminin; human, DNA rep 70.5 26 0.00088 26.9 8.2 26 128-153 50-75 (83)
198 2iyb_E Testin, TESS, TES; LIM 70.5 2.1 7.2E-05 30.0 2.0 39 2-48 4-45 (65)
199 3cvf_A Homer-3, homer protein 70.2 29 0.00098 26.3 8.4 40 129-171 32-71 (79)
200 1x63_A Skeletal muscle LIM-pro 70.1 3.4 0.00012 29.9 3.2 40 2-49 17-57 (82)
201 1joc_A EEA1, early endosomal a 69.5 35 0.0012 27.4 9.5 26 133-158 13-38 (125)
202 3vem_A Helicase protein MOM1; 69.5 43 0.0015 27.1 10.2 37 135-171 65-102 (115)
203 2oqq_A Transcription factor HY 69.1 19 0.00066 24.2 6.3 25 121-145 14-38 (42)
204 1ykh_B RNA polymerase II holoe 69.0 38 0.0013 27.6 9.7 35 133-170 94-128 (132)
205 2lw1_A ABC transporter ATP-bin 68.9 20 0.00069 27.1 7.4 13 118-130 30-42 (89)
206 1yke_B RNA polymerase II holoe 68.9 35 0.0012 28.6 9.6 24 147-170 105-128 (151)
207 3tnu_B Keratin, type II cytosk 68.7 38 0.0013 27.2 9.6 13 131-143 82-94 (129)
208 1x64_A Alpha-actinin-2 associa 68.1 3.2 0.00011 30.8 2.7 39 2-49 27-65 (89)
209 2cuq_A Four and A half LIM dom 67.5 4.7 0.00016 29.0 3.5 35 3-46 18-52 (80)
210 1t6f_A Geminin; coiled-coil, c 67.5 15 0.0005 24.0 5.3 21 132-152 15-35 (37)
211 3t7l_A Zinc finger FYVE domain 67.2 1.7 5.7E-05 33.4 0.9 46 2-47 22-76 (90)
212 3f6q_B LIM and senescent cell 67.0 2.5 8.5E-05 29.5 1.8 40 2-49 13-53 (72)
213 3ryc_E Stathmin-4; alpha-tubul 66.7 56 0.0019 27.3 12.1 62 99-160 65-127 (143)
214 2dnx_A Syntaxin-12; snare, HAB 66.6 49 0.0017 26.6 10.0 24 104-127 49-72 (130)
215 2eqb_B RAB guanine nucleotide 66.6 45 0.0015 26.2 13.0 44 131-174 40-91 (97)
216 1gd2_E Transcription factor PA 66.5 19 0.00064 26.6 6.6 14 134-147 53-66 (70)
217 3etw_A Adhesin A; antiparallel 66.2 52 0.0018 26.7 11.4 9 88-96 11-19 (119)
218 1z60_A TFIIH basal transcripti 66.2 4.2 0.00014 29.2 2.8 40 3-42 18-59 (59)
219 1nkp_A C-MYC, MYC proto-oncoge 66.1 19 0.00065 27.4 6.8 32 124-155 52-83 (88)
220 1m1j_A Fibrinogen alpha subuni 66.0 56 0.0019 32.4 11.6 38 139-176 112-149 (491)
221 3he5_A Synzip1; heterodimeric 65.9 20 0.00067 24.1 5.9 15 133-147 12-26 (49)
222 2egq_A FHL1 protein; LIM domai 65.7 2.8 9.5E-05 30.0 1.9 40 2-49 17-60 (77)
223 1x62_A C-terminal LIM domain p 65.5 2.3 8E-05 30.9 1.4 40 2-50 17-56 (79)
224 1wig_A KIAA1808 protein; LIM d 65.4 2.5 8.6E-05 30.4 1.6 36 2-46 7-42 (73)
225 1gu4_A CAAT/enhancer binding p 65.1 37 0.0013 25.5 8.1 10 141-150 46-55 (78)
226 3na7_A HP0958; flagellar bioge 65.1 75 0.0026 28.2 17.9 28 131-158 97-124 (256)
227 2w6a_A ARF GTPase-activating p 64.8 31 0.0011 24.9 7.1 29 123-151 26-54 (63)
228 1gs9_A Apolipoprotein E, APOE4 64.7 63 0.0022 27.2 11.3 22 110-131 59-80 (165)
229 1x68_A FHL5 protein; four-and- 64.6 2 7E-05 30.9 1.0 39 2-48 7-48 (76)
230 2jne_A Hypothetical protein YF 64.2 0.78 2.7E-05 36.5 -1.5 39 2-46 34-72 (101)
231 3q8t_A Beclin-1; autophagy, AT 64.1 48 0.0016 25.6 10.7 58 121-178 36-93 (96)
232 1vfy_A Phosphatidylinositol-3- 64.0 2.1 7.3E-05 31.4 1.0 29 2-30 13-44 (73)
233 2yw8_A RUN and FYVE domain-con 63.8 1.9 6.5E-05 32.4 0.7 30 2-31 21-53 (82)
234 3teq_A Stromal interaction mol 63.4 48 0.0016 26.2 8.7 49 118-166 29-92 (101)
235 2xhe_B Syntaxin1; exocytosis, 63.0 60 0.0021 29.1 10.7 25 146-170 139-163 (279)
236 1wd2_A Ariadne-1 protein homol 62.9 0.79 2.7E-05 32.9 -1.5 10 2-11 8-17 (60)
237 1wlq_A Geminin; coiled-coil; 2 62.8 49 0.0017 25.3 9.0 26 128-153 42-67 (83)
238 1ef4_A Subunit N, DNA-directed 62.6 4.4 0.00015 28.9 2.3 33 36-77 4-36 (55)
239 1wfl_A Zinc finger protein 216 62.5 2.8 9.4E-05 31.6 1.3 26 2-27 27-52 (74)
240 2zqm_A Prefoldin beta subunit 62.5 50 0.0017 25.3 12.6 31 144-174 76-106 (117)
241 2jrp_A Putative cytoplasmic pr 62.4 0.55 1.9E-05 36.0 -2.6 39 1-45 3-41 (81)
242 3azd_A Short alpha-tropomyosin 62.2 1.6 5.3E-05 28.6 -0.1 29 126-154 6-34 (37)
243 1vcs_A Vesicle transport throu 62.2 46 0.0016 25.8 8.5 74 100-179 17-94 (102)
244 2lw1_A ABC transporter ATP-bin 61.9 32 0.0011 25.9 7.4 7 123-129 28-34 (89)
245 1wfh_A Zinc finger (AN1-like) 61.6 3.6 0.00012 30.2 1.8 26 2-27 17-42 (64)
246 1x4u_A Zinc finger, FYVE domai 61.4 2.2 7.6E-05 32.1 0.7 29 2-30 16-47 (84)
247 1lyp_A CAP18; lipopolysacchari 61.3 20 0.0007 22.1 4.9 28 144-171 3-31 (32)
248 1a7i_A QCRP2 (LIM1); LIM domai 61.2 3.1 0.0001 30.3 1.4 40 2-49 9-48 (81)
249 2wuj_A Septum site-determining 61.1 11 0.00039 26.4 4.3 20 133-152 36-55 (57)
250 2zxx_A Geminin; coiled-coil, c 61.0 35 0.0012 25.8 7.3 23 132-154 42-64 (79)
251 1wfp_A Zinc finger (AN1-like) 60.6 4 0.00014 30.7 1.9 26 2-27 27-52 (74)
252 3he5_A Synzip1; heterodimeric 60.6 35 0.0012 22.9 6.7 14 135-148 35-48 (49)
253 2zqm_A Prefoldin beta subunit 60.4 31 0.0011 26.5 7.3 11 82-92 13-23 (117)
254 1x8y_A Lamin A/C; structural p 60.3 26 0.00089 26.5 6.6 19 128-146 32-50 (86)
255 1uix_A RHO-associated kinase; 60.2 50 0.0017 24.5 8.3 13 125-137 12-24 (71)
256 1ez3_A Syntaxin-1A; three heli 60.0 58 0.002 25.2 10.5 22 148-169 98-119 (127)
257 2cu8_A Cysteine-rich protein 2 59.9 3.7 0.00013 29.4 1.6 40 2-49 11-50 (76)
258 1wff_A Riken cDNA 2810002D23 p 59.9 4.1 0.00014 31.4 1.9 26 2-27 27-53 (85)
259 1fio_A SSO1 protein; four heli 59.8 75 0.0026 26.5 10.5 30 147-176 86-116 (196)
260 2ve7_C Kinetochore protein NUF 59.7 18 0.00062 32.6 6.5 25 126-150 157-181 (250)
261 1wg2_A Zinc finger (AN1-like) 59.7 4 0.00014 29.9 1.7 26 2-27 17-42 (64)
262 1lwu_C Fibrinogen gamma chain; 59.6 31 0.0011 32.5 8.3 11 226-236 111-121 (323)
263 2w6b_A RHO guanine nucleotide 59.4 44 0.0015 23.7 7.6 39 133-171 12-50 (56)
264 2d8y_A Eplin protein; LIM doma 59.3 6.1 0.00021 29.4 2.8 40 2-49 17-56 (91)
265 1deb_A APC protein, adenomatou 59.3 43 0.0015 23.4 8.1 22 114-135 21-42 (54)
266 1z56_A Ligase interacting fact 59.2 4.3 0.00015 36.9 2.2 15 35-49 57-71 (246)
267 1jnm_A Proto-oncogene C-JUN; B 59.1 42 0.0014 23.6 7.1 12 139-150 30-41 (62)
268 3s4r_A Vimentin; alpha-helix, 59.0 59 0.002 24.9 11.5 14 137-150 55-68 (93)
269 1g47_A Pinch protein; LIM doma 58.9 4 0.00014 29.1 1.7 40 2-49 13-53 (77)
270 2cor_A Pinch protein; LIM doma 58.9 5.6 0.00019 29.0 2.5 9 3-11 18-26 (79)
271 1fxk_C Protein (prefoldin); ar 58.9 39 0.0013 26.8 7.9 27 115-141 93-119 (133)
272 3mtu_A Tropomyosin alpha-1 cha 58.7 27 0.00092 25.9 6.3 27 126-152 4-30 (75)
273 1go4_E MAD1 (mitotic arrest de 58.6 28 0.00095 27.5 6.6 62 114-175 16-91 (100)
274 1x3h_A Leupaxin; paxillin fami 58.6 7.3 0.00025 27.9 3.1 38 2-48 17-54 (80)
275 1fxk_A Prefoldin; archaeal pro 57.8 58 0.002 24.5 11.8 21 138-158 72-92 (107)
276 4fla_A Regulation of nuclear P 57.7 83 0.0028 26.3 11.2 7 159-165 128-134 (152)
277 1jnm_A Proto-oncogene C-JUN; B 57.7 14 0.00047 26.2 4.3 13 136-148 41-53 (62)
278 2qyw_A Vesicle transport throu 57.6 64 0.0022 25.0 10.6 59 100-161 27-90 (102)
279 2dgc_A Protein (GCN4); basic d 57.5 14 0.00047 26.6 4.3 16 135-150 34-49 (63)
280 1f5n_A Interferon-induced guan 57.4 50 0.0017 33.4 9.9 23 135-157 498-520 (592)
281 3a5t_A Transcription factor MA 57.3 0.84 2.9E-05 36.8 -2.5 15 62-76 21-35 (107)
282 3m9b_A Proteasome-associated A 57.1 18 0.00061 33.1 6.0 34 132-165 55-88 (251)
283 3onj_A T-snare VTI1; helix, HA 56.8 64 0.0022 24.7 11.6 44 100-143 13-60 (97)
284 1j2o_A FLIN2, fusion of rhombo 56.8 10 0.00035 29.5 3.8 35 1-35 31-67 (114)
285 1gu4_A CAAT/enhancer binding p 56.6 18 0.0006 27.3 4.9 18 133-150 45-62 (78)
286 2dlo_A Thyroid receptor-intera 56.5 9.5 0.00033 27.5 3.4 37 2-47 17-53 (81)
287 3iv1_A Tumor susceptibility ge 56.4 62 0.0021 24.4 11.7 19 158-176 52-70 (78)
288 3q0x_A Centriole protein; cent 56.2 56 0.0019 29.3 9.1 41 115-155 176-216 (228)
289 3cve_A Homer protein homolog 1 56.1 60 0.002 24.1 11.1 9 143-151 19-27 (72)
290 2ve7_A Kinetochore protein HEC 56.0 19 0.00064 33.5 6.1 22 132-153 186-207 (315)
291 1kd8_B GABH BLL, GCN4 acid bas 55.9 24 0.0008 22.9 4.7 15 133-147 17-31 (36)
292 2cu8_A Cysteine-rich protein 2 55.4 6.7 0.00023 28.0 2.4 32 1-32 37-69 (76)
293 2oqq_A Transcription factor HY 55.4 44 0.0015 22.4 6.1 33 121-153 7-39 (42)
294 4afl_A P29ING4, inhibitor of g 55.1 68 0.0023 24.5 8.4 36 141-176 65-100 (104)
295 2k48_A Nucleoprotein; viral pr 55.0 79 0.0027 25.2 9.7 25 133-157 77-101 (107)
296 1jsd_B Haemagglutinin (HA2 cha 54.8 3.2 0.00011 35.6 0.6 21 162-185 113-133 (176)
297 2gmg_A Hypothetical protein PF 54.1 3.4 0.00012 33.1 0.6 29 14-47 68-96 (105)
298 3ku3_B Hemagglutinin HA2 chain 53.9 3 0.0001 35.9 0.2 20 162-184 113-132 (174)
299 2fiy_A Protein FDHE homolog; F 53.7 2.1 7.3E-05 40.1 -0.7 42 2-44 184-231 (309)
300 3vem_A Helicase protein MOM1; 53.5 88 0.003 25.3 10.7 11 116-126 67-77 (115)
301 2l4z_A DNA endonuclease RBBP8, 53.4 6 0.00021 31.6 2.0 37 2-46 63-99 (123)
302 3cvf_A Homer-3, homer protein 53.1 71 0.0024 24.1 10.0 24 132-155 14-37 (79)
303 4f23_A Hemagglutinin, H16; sia 52.4 2.5 8.5E-05 42.2 -0.5 20 162-184 447-466 (515)
304 3u06_A Protein claret segregat 52.1 44 0.0015 32.2 8.2 53 126-178 5-57 (412)
305 1kd8_B GABH BLL, GCN4 acid bas 52.0 40 0.0014 21.9 5.3 26 129-154 6-31 (36)
306 2ocy_A RAB guanine nucleotide 51.9 1.1E+02 0.0037 25.9 11.8 39 135-173 105-143 (154)
307 1x8y_A Lamin A/C; structural p 51.2 75 0.0026 23.9 8.0 31 111-141 22-52 (86)
308 2l3k_A Rhombotin-2, linker, LI 51.2 8.2 0.00028 30.4 2.5 32 1-32 37-69 (123)
309 3onj_A T-snare VTI1; helix, HA 51.1 80 0.0027 24.1 12.3 25 126-150 36-60 (97)
310 3ilw_A DNA gyrase subunit A; D 51.0 1.2E+02 0.0042 29.9 11.2 48 134-181 419-466 (470)
311 1x6a_A LIMK-2, LIM domain kina 50.9 14 0.00049 26.4 3.6 37 2-47 17-53 (81)
312 2d8y_A Eplin protein; LIM doma 50.9 13 0.00046 27.4 3.5 33 1-33 43-75 (91)
313 1fxk_A Prefoldin; archaeal pro 50.6 37 0.0013 25.7 6.1 34 121-154 69-102 (107)
314 1s1c_X RHO-associated, coiled- 50.5 62 0.0021 24.0 7.0 26 117-142 6-31 (71)
315 2yo3_A General control protein 49.5 66 0.0023 29.6 8.5 30 135-164 227-256 (268)
316 2aze_A Transcription factor DP 49.3 34 0.0012 29.1 6.1 35 138-172 5-39 (155)
317 3vmx_A Voltage-gated hydrogen 49.0 62 0.0021 22.3 7.1 33 134-166 7-39 (48)
318 1x62_A C-terminal LIM domain p 48.8 5.6 0.00019 28.8 1.0 33 1-33 42-74 (79)
319 4dyl_A Tyrosine-protein kinase 48.7 80 0.0027 29.9 9.4 20 149-168 168-187 (406)
320 3efg_A Protein SLYX homolog; x 48.5 48 0.0016 24.7 6.2 10 164-173 51-60 (78)
321 1twf_J DNA-directed RNA polyme 48.5 16 0.00055 27.1 3.5 33 35-76 4-37 (70)
322 2efl_A Formin-binding protein 48.3 1.4E+02 0.0048 26.1 14.7 29 149-177 176-204 (305)
323 3hhm_B NISH2 P85alpha; PI3KCA, 48.2 1.3E+02 0.0043 28.7 10.7 46 135-180 209-254 (373)
324 2c0s_A Conserved domain protei 48.2 62 0.0021 23.3 6.6 40 135-174 5-51 (64)
325 1dn1_B Syntaxin 1A, syntaxin b 48.2 1.5E+02 0.0051 26.4 12.7 28 147-174 120-148 (267)
326 1wt6_A Myotonin-protein kinase 48.1 89 0.003 23.8 8.7 16 134-149 55-70 (81)
327 3fpp_A Macrolide-specific effl 48.0 85 0.0029 28.1 9.2 14 161-174 130-143 (341)
328 4dk0_A Putative MACA; alpha-ha 47.6 1E+02 0.0035 27.9 9.7 26 153-178 123-148 (369)
329 2oxj_A Hybrid alpha/beta pepti 47.2 45 0.0016 21.3 4.9 21 132-152 9-29 (34)
330 1zxa_A CGMP-dependent protein 47.0 27 0.00094 25.6 4.5 28 147-174 27-54 (67)
331 2inr_A DNA topoisomerase 4 sub 47.0 2.1E+02 0.0072 28.5 12.4 50 134-183 457-506 (514)
332 2cur_A Skeletal muscle LIM-pro 46.6 8.3 0.00029 26.9 1.7 33 1-33 32-64 (69)
333 1x4l_A Skeletal muscle LIM-pro 46.6 11 0.00039 26.4 2.4 32 1-32 36-67 (72)
334 2pnv_A Small conductance calci 46.5 29 0.001 23.3 4.2 6 119-124 11-16 (43)
335 2ocy_A RAB guanine nucleotide 46.4 1.3E+02 0.0045 25.3 9.8 42 135-176 76-125 (154)
336 1wyh_A SLIM 2, skeletal muscle 46.4 11 0.00036 26.4 2.2 32 1-32 34-65 (72)
337 3u0c_A Invasin IPAB, 62 kDa an 46.3 74 0.0025 27.6 7.7 95 66-165 61-161 (201)
338 2zdi_C Prefoldin subunit alpha 45.9 61 0.0021 26.4 7.2 36 115-150 103-138 (151)
339 2yko_A LINE-1 ORF1P; RNA-bindi 45.9 39 0.0013 30.5 6.3 45 135-182 10-54 (233)
340 1nyp_A Pinch protein; LIM doma 45.9 10 0.00034 26.2 2.0 33 1-33 32-64 (66)
341 3iv1_A Tumor susceptibility ge 45.9 94 0.0032 23.4 9.9 27 126-152 48-74 (78)
342 2ehe_A Four and A half LIM dom 45.7 4.1 0.00014 29.5 -0.1 39 2-48 17-56 (82)
343 2a01_A Apolipoprotein A-I; fou 45.5 1.3E+02 0.0043 26.6 9.7 30 148-177 201-231 (243)
344 1t3j_A Mitofusin 1; coiled coi 45.5 1.1E+02 0.0037 24.0 8.7 27 110-136 40-66 (96)
345 1g6u_A Domain swapped dimer; d 45.4 65 0.0022 21.5 6.3 21 133-153 22-42 (48)
346 3ci9_A Heat shock factor-bindi 45.4 40 0.0014 23.2 4.9 22 100-121 14-35 (48)
347 3r2p_A Apolipoprotein A-I; amp 45.2 1.4E+02 0.0047 25.1 13.3 25 136-160 109-133 (185)
348 2j1d_G DAAM1, disheveled-assoc 45.1 1.1E+02 0.0037 29.8 9.9 32 149-180 332-363 (483)
349 3ghg_B Fibrinogen beta chain; 44.7 2.3E+02 0.008 27.9 12.1 19 160-178 164-182 (461)
350 1x61_A Thyroid receptor intera 44.5 11 0.00036 26.5 2.0 34 1-34 34-67 (72)
351 3trt_A Vimentin; cytoskeleton, 44.5 86 0.0029 22.6 11.6 19 125-143 57-75 (77)
352 4dzn_A Coiled-coil peptide CC- 44.4 55 0.0019 20.3 5.1 22 130-151 8-29 (33)
353 3gp4_A Transcriptional regulat 44.3 98 0.0034 25.0 8.1 6 68-73 59-64 (142)
354 1zvu_A Topoisomerase IV subuni 44.3 2.2E+02 0.0074 29.7 12.3 51 134-184 405-455 (716)
355 4ani_A Protein GRPE; chaperone 44.3 1.5E+02 0.005 26.2 9.7 32 117-148 66-97 (213)
356 2l5g_B Putative uncharacterize 44.2 58 0.002 21.8 5.3 8 144-151 22-29 (42)
357 1s94_A S-syntaxin; three helix 44.0 63 0.0022 26.9 7.1 19 150-168 131-149 (180)
358 1a93_B MAX protein, coiled coi 43.7 36 0.0012 21.9 4.1 19 132-150 8-26 (34)
359 3haj_A Human pacsin2 F-BAR; pa 43.6 2.3E+02 0.0079 27.3 15.5 11 148-158 188-198 (486)
360 1x68_A FHL5 protein; four-and- 43.6 13 0.00044 26.5 2.3 31 1-31 36-66 (76)
361 1hs7_A Syntaxin VAM3; UP-and-D 43.6 74 0.0025 24.8 6.8 16 154-169 73-88 (97)
362 4ani_A Protein GRPE; chaperone 43.5 50 0.0017 29.2 6.6 35 142-176 63-97 (213)
363 1fio_A SSO1 protein; four heli 43.3 1.4E+02 0.0048 24.7 9.8 25 136-160 89-113 (196)
364 2zdi_C Prefoldin subunit alpha 43.3 69 0.0024 26.1 7.1 41 122-162 96-136 (151)
365 2dar_A PDZ and LIM domain prot 43.1 14 0.00048 27.2 2.5 33 1-33 52-84 (90)
366 4etp_B Spindle POLE BODY-assoc 43.1 82 0.0028 29.8 8.2 48 127-174 13-60 (333)
367 3haj_A Human pacsin2 F-BAR; pa 43.1 2.3E+02 0.008 27.2 12.0 10 212-221 322-331 (486)
368 1x64_A Alpha-actinin-2 associa 43.1 12 0.0004 27.6 2.1 33 1-33 52-84 (89)
369 3viq_A SWI5-dependent recombin 43.0 1.3E+02 0.0045 24.2 9.0 58 114-176 11-68 (122)
370 2jo8_A Serine/threonine-protei 42.9 46 0.0016 23.2 4.9 15 144-158 27-41 (51)
371 3bas_A Myosin heavy chain, str 42.9 1.1E+02 0.0036 23.1 12.1 9 163-171 74-82 (89)
372 1x4k_A Skeletal muscle LIM-pro 42.8 12 0.00042 26.1 2.1 33 1-33 34-66 (72)
373 3hhm_B NISH2 P85alpha; PI3KCA, 42.7 2.3E+02 0.0077 26.9 14.9 45 127-171 208-252 (373)
374 4e81_A Chaperone protein DNAK; 42.6 1.7E+02 0.0058 25.4 10.4 20 67-86 117-136 (219)
375 2d8z_A Four and A half LIM dom 42.6 16 0.00053 25.4 2.6 32 1-32 32-63 (70)
376 3sja_C Golgi to ER traffic pro 42.6 40 0.0014 24.6 4.8 21 154-174 34-54 (65)
377 1a93_B MAX protein, coiled coi 42.5 49 0.0017 21.2 4.6 24 143-166 5-28 (34)
378 1g47_A Pinch protein; LIM doma 42.5 12 0.0004 26.6 1.9 32 1-32 40-71 (77)
379 2zvf_A Alanyl-tRNA synthetase; 42.4 22 0.00075 29.3 3.9 22 133-154 34-55 (171)
380 3ghg_C Fibrinogen gamma chain; 42.1 2.5E+02 0.0085 27.2 14.8 43 132-174 92-134 (411)
381 1gs9_A Apolipoprotein E, APOE4 42.0 95 0.0033 26.1 7.9 16 165-180 142-157 (165)
382 1a7i_A QCRP2 (LIM1); LIM domai 41.7 7.9 0.00027 28.0 0.9 41 1-43 35-75 (81)
383 2nov_A DNA topoisomerase 4 sub 41.7 18 0.00063 36.0 3.8 57 133-189 432-488 (496)
384 1lrz_A FEMA, factor essential 41.7 77 0.0026 29.9 8.1 46 133-178 249-300 (426)
385 2dq0_A Seryl-tRNA synthetase; 41.4 1.5E+02 0.0052 28.7 10.3 21 158-178 82-102 (455)
386 3vp9_A General transcriptional 41.2 1.2E+02 0.0042 23.4 8.3 8 169-176 78-85 (92)
387 4gzn_C ZFP-57, zinc finger pro 41.0 12 0.0004 26.0 1.6 15 34-48 31-45 (60)
388 3ibp_A Chromosome partition pr 40.9 58 0.002 30.4 6.8 39 135-173 221-259 (302)
389 2ctu_A Zinc finger protein 483 40.9 5.4 0.00018 26.9 -0.2 33 2-48 20-52 (73)
390 3a2a_A Voltage-gated hydrogen 40.8 86 0.0029 22.2 6.0 17 129-145 30-46 (58)
391 3swf_A CGMP-gated cation chann 40.6 1.1E+02 0.0038 22.8 8.0 26 116-141 6-31 (74)
392 3swy_A Cyclic nucleotide-gated 40.6 84 0.0029 21.4 7.5 20 117-136 5-24 (46)
393 2qag_C Septin-7; cell cycle, c 40.5 5.8 0.0002 38.3 0.0 22 139-160 363-384 (418)
394 2d8x_A Protein pinch; LIM doma 40.5 13 0.00044 25.9 1.8 33 1-33 32-64 (70)
395 3ljm_A Coil Ser L9C; de novo d 40.3 48 0.0016 20.3 4.1 17 132-148 9-25 (31)
396 1iml_A CRIP, cysteine rich int 40.1 11 0.00037 26.8 1.4 40 2-49 2-41 (76)
397 2fxo_A Myosin heavy chain, car 39.8 1.4E+02 0.0049 23.8 13.3 78 102-179 37-117 (129)
398 2dj7_A Actin-binding LIM prote 39.7 12 0.00041 27.3 1.6 38 2-47 17-54 (80)
399 2xzr_A Immunoglobulin-binding 39.7 1.4E+02 0.0047 23.6 11.6 22 114-135 52-73 (114)
400 1xaw_A Occludin; coiled-coil, 39.5 1.6E+02 0.0056 24.4 10.0 11 118-128 74-84 (140)
401 4ioe_A Secreted protein ESXB; 39.3 1E+02 0.0036 22.1 9.4 68 101-168 14-93 (93)
402 3sjb_C Golgi to ER traffic pro 38.8 65 0.0022 25.1 5.7 26 153-178 50-75 (93)
403 2avr_X Adhesion A; antiparalle 38.8 1.6E+02 0.0053 23.9 14.3 37 137-173 70-106 (119)
404 4gfq_A Ribosome-recycling fact 38.4 1.6E+02 0.0056 25.9 9.1 59 100-158 137-195 (209)
405 1wle_A Seryl-tRNA synthetase; 38.3 2.5E+02 0.0084 27.7 11.3 22 207-228 190-214 (501)
406 4fi5_A Nucleoprotein; structur 38.3 1.5E+02 0.0053 23.7 9.7 57 101-157 24-88 (113)
407 3iox_A AGI/II, PA; alpha helix 38.2 3.1E+02 0.011 27.3 15.3 29 152-180 76-104 (497)
408 3a2a_A Voltage-gated hydrogen 38.1 1E+02 0.0035 21.8 6.1 26 129-154 23-48 (58)
409 3c3f_A Alpha/beta peptide with 38.0 58 0.002 20.8 4.3 6 136-141 20-25 (34)
410 2lf0_A Uncharacterized protein 37.7 42 0.0014 27.4 4.6 39 116-154 9-59 (123)
411 1am9_A Srebp-1A, protein (ster 37.3 79 0.0027 23.4 6.0 22 127-148 53-74 (82)
412 3rrk_A V-type ATPase 116 kDa s 37.3 1.7E+02 0.0058 26.7 9.5 15 229-243 328-344 (357)
413 3qne_A Seryl-tRNA synthetase, 37.3 1.9E+02 0.0066 28.5 10.3 19 158-176 84-102 (485)
414 1m3v_A FLIN4, fusion of the LI 37.1 16 0.00056 28.6 2.2 37 2-46 7-43 (122)
415 2y3a_B Phosphatidylinositol 3- 37.1 5.6 0.00019 37.1 -0.7 46 137-182 10-55 (302)
416 3uk3_C Zinc finger protein 217 36.9 23 0.00078 22.6 2.6 14 34-47 31-44 (57)
417 1x4w_A Hypothetical protein FL 36.9 7.2 0.00025 28.8 -0.0 25 2-27 17-45 (67)
418 2l5g_A GPS2 protein, G protein 36.8 58 0.002 21.3 4.3 19 121-139 12-30 (38)
419 2egq_A FHL1 protein; LIM domai 36.8 21 0.00072 25.2 2.6 24 21-46 3-26 (77)
420 3gwk_C SAG1039, putative uncha 36.7 1.2E+02 0.0041 22.0 12.4 36 139-174 56-91 (98)
421 1v6g_A Actin binding LIM prote 36.6 14 0.00049 26.5 1.6 39 2-49 17-55 (81)
422 2gtl_N Extracellular hemoglobi 36.6 65 0.0022 28.8 6.1 44 133-178 5-48 (220)
423 2dlo_A Thyroid receptor-intera 36.6 16 0.00056 26.2 1.9 32 1-32 42-74 (81)
424 1nkp_A C-MYC, MYC proto-oncoge 36.5 52 0.0018 24.9 4.8 14 137-150 72-85 (88)
425 1u2m_A Histone-like protein HL 36.4 9.4 0.00032 30.8 0.6 10 165-174 96-105 (143)
426 3swf_A CGMP-gated cation chann 36.3 1.3E+02 0.0045 22.4 7.6 30 109-138 17-46 (74)
427 1j2o_A FLIN2, fusion of rhombo 36.2 28 0.00096 26.9 3.4 38 2-47 5-42 (114)
428 2iyb_E Testin, TESS, TES; LIM 36.2 17 0.00059 25.1 1.9 31 1-31 33-64 (65)
429 2qag_B Septin-6, protein NEDD5 36.2 7.5 0.00026 37.8 0.0 18 141-158 369-386 (427)
430 1eh1_A Ribosome recycling fact 36.1 2.1E+02 0.0072 24.6 9.7 58 100-157 114-171 (185)
431 1f5n_A Interferon-induced guan 36.0 3.5E+02 0.012 27.2 14.5 8 68-75 454-461 (592)
432 2co8_A NEDD9 interacting prote 36.0 13 0.00044 27.2 1.3 39 2-48 17-55 (82)
433 2cuq_A Four and A half LIM dom 35.8 18 0.0006 25.8 2.0 32 1-32 42-73 (80)
434 3ci9_A Heat shock factor-bindi 35.6 66 0.0023 22.0 4.7 29 109-137 16-44 (48)
435 2dj7_A Actin-binding LIM prote 35.6 15 0.00051 26.8 1.6 31 1-32 43-73 (80)
436 2dgc_A Protein (GCN4); basic d 35.6 66 0.0022 22.9 5.0 28 128-155 34-61 (63)
437 2apo_B Ribosome biogenesis pro 35.5 11 0.00037 27.2 0.7 24 35-60 18-41 (60)
438 1ik9_A DNA repair protein XRCC 35.2 2.1E+02 0.0073 25.0 9.3 17 158-174 185-201 (213)
439 2bzb_A Conserved domain protei 34.9 60 0.0021 23.2 4.7 38 135-172 5-49 (62)
440 2co8_A NEDD9 interacting prote 34.9 20 0.00067 26.1 2.2 30 1-30 43-74 (82)
441 1vcs_A Vesicle transport throu 34.9 59 0.002 25.1 5.0 19 112-130 40-58 (102)
442 2pv0_B DNA (cytosine-5)-methyl 34.8 30 0.001 33.4 4.0 41 2-44 95-148 (386)
443 2l5g_B Putative uncharacterize 34.7 88 0.003 20.9 5.0 23 117-139 9-31 (42)
444 3mov_A Lamin-B1; LMNB1, B-type 34.7 1.5E+02 0.0053 22.7 8.4 22 125-146 38-59 (95)
445 1v6g_A Actin binding LIM prote 34.7 14 0.00049 26.5 1.4 32 1-32 42-74 (81)
446 2p22_C Protein SRN2; endosome, 34.3 2.3E+02 0.0077 24.5 11.2 66 113-178 65-140 (192)
447 2pnv_A Small conductance calci 34.2 89 0.003 20.9 5.1 11 126-136 25-35 (43)
448 4i0x_B ESAT-6-like protein MAB 34.1 1.5E+02 0.005 22.2 7.8 71 119-189 13-90 (103)
449 1dd5_A Ribosome recycling fact 33.9 2.2E+02 0.0077 24.4 9.1 58 100-157 113-170 (185)
450 3aco_A Pacsin2, protein kinase 33.8 1.8E+02 0.0063 26.4 9.1 7 237-243 328-334 (350)
451 1fxk_C Protein (prefoldin); ar 33.8 1.7E+02 0.0059 22.9 13.7 43 137-179 87-129 (133)
452 3etw_A Adhesin A; antiparallel 33.7 1.9E+02 0.0064 23.4 14.5 25 148-172 81-105 (119)
453 1kd8_A GABH AIV, GCN4 acid bas 33.4 59 0.002 21.0 3.9 13 134-146 18-30 (36)
454 1cii_A Colicin IA; bacteriocin 33.4 3.6E+02 0.012 27.0 11.2 39 127-165 387-425 (602)
455 2zet_C Melanophilin; complex, 33.4 13 0.00045 31.3 1.0 42 2-43 70-116 (153)
456 2ct7_A Ring finger protein 31; 33.1 11 0.00036 28.3 0.4 28 3-30 28-60 (86)
457 2xv5_A Lamin-A/C; structural p 33.1 1.1E+02 0.0037 22.6 6.0 14 132-145 13-26 (74)
458 4dci_A Uncharacterized protein 33.0 2.2E+02 0.0074 23.8 10.0 68 111-181 30-106 (150)
459 1ise_A Ribosome recycling fact 33.0 2.2E+02 0.0076 24.5 8.9 58 100-157 113-170 (185)
460 1l8d_A DNA double-strand break 32.9 1.6E+02 0.0055 22.3 11.9 29 145-173 71-99 (112)
461 2eps_A POZ-, at HOOK-, and zin 32.9 37 0.0013 21.8 3.1 12 35-46 41-52 (54)
462 1lrz_A FEMA, factor essential 32.8 1.4E+02 0.0048 28.1 8.4 9 65-73 171-179 (426)
463 1hlo_A Protein (transcription 32.8 47 0.0016 24.4 4.0 19 127-145 60-78 (80)
464 3ter_A Mammalian stromal inter 32.8 2.1E+02 0.0072 23.7 11.0 43 117-159 59-111 (136)
465 3a1b_A DNA (cytosine-5)-methyl 32.7 33 0.0011 29.2 3.4 57 2-65 81-150 (159)
466 1j1d_C Troponin I, TNI; THIN f 32.5 1.4E+02 0.0047 24.6 7.1 43 129-171 63-105 (133)
467 2wrg_I Hemagglutinin HA2 chain 32.5 1.5E+02 0.0051 26.3 7.6 21 162-185 113-133 (222)
468 1j1d_B Troponin T, TNT; THIN f 32.4 1.6E+02 0.0053 23.3 7.2 27 129-155 47-73 (106)
469 3fpp_A Macrolide-specific effl 32.4 2.1E+02 0.0073 25.4 9.2 9 65-73 58-66 (341)
470 2adr_A ADR1; transcription reg 32.4 25 0.00084 22.7 2.2 13 35-47 30-42 (60)
471 4dzo_A Mitotic spindle assembl 32.4 83 0.0028 25.4 5.7 36 145-180 4-39 (123)
472 2p22_C Protein SRN2; endosome, 32.3 2.4E+02 0.0084 24.3 15.6 127 35-163 16-149 (192)
473 1bbo_A Human enhancer-binding 32.2 30 0.001 22.0 2.5 34 1-46 2-40 (57)
474 1nkp_B MAX protein, MYC proto- 32.2 42 0.0014 24.8 3.6 33 119-151 49-81 (83)
475 1fzc_C Fibrin; blood coagulati 32.2 27 0.00093 32.8 3.1 40 114-153 8-47 (319)
476 3aon_A V-type sodium ATPase su 32.2 2E+02 0.0068 25.0 8.6 51 124-174 17-67 (217)
477 2lce_A B-cell lymphoma 6 prote 32.2 24 0.00083 24.0 2.2 34 1-46 18-56 (74)
478 2ld3_A Myosin VI; molecular mo 38.4 9.6 0.00033 29.4 0.0 69 113-181 10-78 (88)
479 2epq_A POZ-, at HOOK-, and zin 32.1 36 0.0012 20.7 2.8 30 1-42 11-45 (45)
480 2w83_C C-JUN-amino-terminal ki 31.8 1.6E+02 0.0056 22.1 9.3 67 89-155 9-75 (77)
481 1kd8_A GABH AIV, GCN4 acid bas 31.7 88 0.003 20.2 4.5 31 126-156 3-33 (36)
482 1is1_A Ribosome recycling fact 31.5 2.1E+02 0.0073 24.5 8.5 69 98-166 111-179 (185)
483 2ic6_A Nucleocapsid protein; h 31.5 1.7E+02 0.0057 22.1 9.6 56 101-156 7-70 (78)
484 1wqg_A Ribosome recycling fact 31.5 2.1E+02 0.0073 24.5 8.5 69 98-166 111-179 (185)
485 4fla_A Regulation of nuclear P 31.5 2.2E+02 0.0077 23.6 12.1 77 102-178 71-147 (152)
486 3qne_A Seryl-tRNA synthetase, 31.4 3.6E+02 0.012 26.6 11.2 92 49-150 3-104 (485)
487 3mud_A DNA repair protein XRCC 31.3 1.3E+02 0.0044 25.9 7.0 41 115-155 126-166 (175)
488 2ehe_A Four and A half LIM dom 31.3 19 0.00064 25.9 1.5 45 2-54 17-62 (82)
489 2epr_A POZ-, at HOOK-, and zin 31.0 34 0.0012 21.2 2.6 31 1-43 13-48 (48)
490 3k29_A Putative uncharacterize 31.0 2.5E+02 0.0086 24.0 9.7 60 111-170 7-66 (169)
491 3tul_A Cell invasion protein S 31.0 2.1E+02 0.0071 24.1 8.0 75 113-187 23-99 (158)
492 1lwu_B Fibrinogen beta chain; 30.9 73 0.0025 29.8 5.8 45 115-159 7-56 (323)
493 1ez3_A Syntaxin-1A; three heli 30.9 1.8E+02 0.0062 22.3 10.5 62 102-163 46-120 (127)
494 2rgt_A Fusion of LIM/homeobox 30.9 30 0.001 28.5 2.9 44 1-44 94-139 (169)
495 2kpi_A Uncharacterized protein 30.8 25 0.00086 24.6 2.0 23 1-23 11-38 (56)
496 1ytz_T Troponin T; muscle, THI 30.6 1.9E+02 0.0063 22.9 7.3 43 114-156 46-88 (107)
497 3ghg_B Fibrinogen beta chain; 30.5 1.9E+02 0.0064 28.6 8.8 70 111-180 82-151 (461)
498 2wq1_A General control protein 30.4 68 0.0023 20.4 3.7 32 126-157 2-33 (33)
499 2r2v_A GCN4 leucine zipper; co 30.4 93 0.0032 19.9 4.4 32 126-157 3-34 (34)
500 3rrk_A V-type ATPase 116 kDa s 30.3 1.8E+02 0.0062 26.5 8.4 50 130-179 225-275 (357)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.22 E-value=6.8e-12 Score=94.06 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=44.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
+.|+||...+. +||++.|||+||..|+.+|+.. ...||+|++.+...++++
T Consensus 9 ~~C~IC~~~~~-~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 9 FRCPISLELMK-DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSCTTTSCCCS-SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred CCCCCcccccc-CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 57999999886 6999999999999999999986 789999999998665543
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.17 E-value=1.1e-11 Score=95.84 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=45.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. +||++.|||+||..||.+|+....+||+|+..++..++++
T Consensus 15 ~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p 65 (85)
T 2kr4_A 15 FRDPLMDTLMT-DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP 65 (85)
T ss_dssp TBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred eECcccCchhc-CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence 68999999986 6999999999999999999988889999999998665544
No 3
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=91.60 Aligned_cols=51 Identities=22% Similarity=0.455 Sum_probs=44.1
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
+.|+||...+.+ ++++ .|||+||..|+.+|+.....||+|++.+...+++.
T Consensus 16 ~~C~IC~~~~~~-p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (72)
T 2djb_A 16 ILCSICKGYLID-ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLS 67 (72)
T ss_dssp GSCTTTSSCCSS-CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCC
T ss_pred CCCCCCChHHHC-cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccc
Confidence 469999999864 6664 99999999999999988899999999998776644
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=1.6e-11 Score=98.05 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. +||++.|||+||..||.+||....+||+|+.+++..++++
T Consensus 30 ~~CpI~~~~m~-dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~p 80 (100)
T 2kre_A 30 FRDPLMDTLMT-DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEP 80 (100)
T ss_dssp TBCTTTCSBCS-SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEE
T ss_pred hCCcCccCccc-CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceE
Confidence 68999999986 6999999999999999999988889999999998765544
No 5
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.3e-11 Score=90.04 Aligned_cols=49 Identities=27% Similarity=0.632 Sum_probs=42.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-CCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-NDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~~di 50 (302)
+.|+||...+. +++++.|||+||..|+.+|+. ....||+|++.+...++
T Consensus 16 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 16 YKCEKCHLVLC-SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp EECTTTCCEES-SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCCCCCChHhc-CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 36999999986 588899999999999999995 57789999999887665
No 6
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.16 E-value=1.5e-11 Score=90.15 Aligned_cols=53 Identities=26% Similarity=0.708 Sum_probs=45.6
Q ss_pred CccccCcccccC------CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCccc
Q 022126 1 MRCNACWRELEG------RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPV 53 (302)
Q Consensus 1 l~CNiC~~~l~~------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~ 53 (302)
+.|+||+..+.+ .++++.|||+||..|+.+|+.....||+|++.+...++.++
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 469999998853 12899999999999999999888999999999988777654
No 7
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=87.95 Aligned_cols=53 Identities=26% Similarity=0.708 Sum_probs=45.7
Q ss_pred CccccCcccccC------CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCccc
Q 022126 1 MRCNACWRELEG------RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPV 53 (302)
Q Consensus 1 l~CNiC~~~l~~------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~ 53 (302)
+.|+||+..+.+ .++++.|||+||..|+.+|+.....||.|++.+...++.++
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 469999998853 23899999999999999999888999999999988777654
No 8
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.14 E-value=2e-11 Score=96.53 Aligned_cols=51 Identities=27% Similarity=0.552 Sum_probs=44.8
Q ss_pred CccccCcccccCCcEE-ecCCccccHHHHHhhhcCC-CCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAIS-TTCGHLLCTEDANKILSND-AACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv-T~CGHiFC~~Ci~~~~~~~-~~CPvC~~~l~~~div~ 52 (302)
+.|+||...+. .|++ +.|||+||..||.+|+... ..||+|++.+...+++.
T Consensus 23 ~~C~IC~~~~~-~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~ 75 (100)
T 3lrq_A 23 FRCFICMEKLR-DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN 75 (100)
T ss_dssp TBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred CCCccCCcccc-CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence 57999999996 5888 9999999999999999876 79999999998766654
No 9
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.13 E-value=2.7e-11 Score=100.90 Aligned_cols=46 Identities=24% Similarity=0.654 Sum_probs=41.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.|+||...+. +||++.|||+||..|+..|+.....||+|++.+..
T Consensus 54 ~~C~iC~~~~~-~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFI-EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCS-SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred CCCcccCcccC-CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 46999999986 69999999999999999999989999999998754
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=88.45 Aligned_cols=49 Identities=24% Similarity=0.646 Sum_probs=42.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc---CCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS---NDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~---~~~~CPvC~~~l~~~di 50 (302)
+.|+||+..+. +++++.|||+||..|+.+|+. ....||+|++.+...++
T Consensus 21 ~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 21 VICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CBCTTTCSBCS-SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CEeccCCcccC-CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 47999999886 699999999999999999986 46789999999876554
No 11
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.11 E-value=4.3e-11 Score=95.20 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=45.7
Q ss_pred CccccCcccccCCcEEecCC-ccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCG-HLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CG-HiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. +||++.|| |+||..||.+||....+||+|+.++...++++
T Consensus 23 ~~CpI~~~~m~-dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~p 74 (98)
T 1wgm_A 23 FLDPIMSTLMC-DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRP 74 (98)
T ss_dssp TBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEE
T ss_pred cCCcCcccccc-CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceE
Confidence 68999999986 69999999 99999999999988889999999998765544
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3.4e-11 Score=89.07 Aligned_cols=49 Identities=18% Similarity=0.491 Sum_probs=43.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
+.|+||+..+. +++++.|||+||..|+.+|+.....||+|+..+...++
T Consensus 16 ~~C~IC~~~~~-~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 16 PECAICLQTCV-HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CBCSSSSSBCS-SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred CCCccCCcccC-CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 46999999885 68999999999999999998888999999999876554
No 13
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=4.9e-11 Score=89.61 Aligned_cols=51 Identities=24% Similarity=0.602 Sum_probs=44.1
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC------CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN------DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~------~~~CPvC~~~l~~~div~ 52 (302)
+.|+||+..+. .++++.|||+||..|+..|+.. ...||.|++.+...++.+
T Consensus 20 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecw_A 20 VTCPICLELLK-EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76 (85)
T ss_dssp TSCTTTCSCCS-SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEE
T ss_pred CCCcCCChhhC-cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCc
Confidence 47999999986 5889999999999999999875 678999999998766543
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=4.5e-11 Score=90.46 Aligned_cols=45 Identities=29% Similarity=0.663 Sum_probs=41.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
+.|+||+..+. .++++.|||+||..|+.+|+.....||+|++.+.
T Consensus 16 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQ-NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp SBCSSSCSBCC-SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCcCCCchhc-CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 47999999986 5999999999999999999988899999999886
No 15
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.08 E-value=3.1e-11 Score=90.19 Aligned_cols=50 Identities=26% Similarity=0.609 Sum_probs=43.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-------CCCCCCCccccccCCCc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-------DAACPICDQVLSKSLMK 51 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-------~~~CPvC~~~l~~~div 51 (302)
+.|+||...+. +++++.|||+||..|+.+|+.. ...||+|+..+...++.
T Consensus 13 ~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 69 (79)
T 2egp_A 13 VTCPICLELLT-EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ 69 (79)
T ss_dssp CEETTTTEECS-SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred CCCcCCCcccC-CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence 47999999986 5889999999999999999875 67899999999876553
No 16
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=6.9e-11 Score=85.83 Aligned_cols=52 Identities=25% Similarity=0.590 Sum_probs=42.8
Q ss_pred CccccCcc-cccCC---cEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWR-ELEGR---AISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~-~l~~~---~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
+.|+||+. .+.+. ++++.|||+||..|+.+++.. ...||+|++.+...++.+
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence 46999999 66542 268999999999999999764 578999999998877654
No 17
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=5.7e-11 Score=88.78 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=41.1
Q ss_pred CccccCcccccCCcEEec-CCccccHHHHHhhhcCC--CCCCCCccccccCC
Q 022126 1 MRCNACWRELEGRAISTT-CGHLLCTEDANKILSND--AACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~-CGHiFC~~Ci~~~~~~~--~~CPvC~~~l~~~d 49 (302)
+.|+||...+. +++++. |||+||..|+..|+... ..||+|++.+...+
T Consensus 16 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 16 LLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GSCSSSCCCCT-TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCcCCChHHh-CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 47999999886 689999 99999999999998753 79999999865544
No 18
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.06 E-value=9.9e-11 Score=95.43 Aligned_cols=46 Identities=26% Similarity=0.633 Sum_probs=41.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~ 47 (302)
+.|+||...+. +|+++.|||+||..|+..|+.. ...||+|++.+..
T Consensus 53 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999999986 6999999999999999999875 5599999999876
No 19
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.06 E-value=8.8e-11 Score=92.04 Aligned_cols=49 Identities=27% Similarity=0.644 Sum_probs=42.9
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
+.|+||...+. +++++ .|||+||..|+.+|+.....||+|+..+...++
T Consensus 23 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l 72 (99)
T 2y43_A 23 LRCGICFEYFN-IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72 (99)
T ss_dssp TBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred CCcccCChhhC-CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence 57999999986 58777 899999999999999888999999998876444
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.1e-10 Score=88.79 Aligned_cols=50 Identities=24% Similarity=0.712 Sum_probs=43.0
Q ss_pred CccccCcccccC---CcEEecCCccccHHHHHhhhcCC---CCCCCCccccccCCC
Q 022126 1 MRCNACWRELEG---RAISTTCGHLLCTEDANKILSND---AACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~---~~CPvC~~~l~~~di 50 (302)
+.|+||+..+.+ .++++.|||+||..|+.+|+... ..||.|++.+...++
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 479999999863 28999999999999999998754 799999999877654
No 21
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=5.5e-11 Score=107.26 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=44.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. +||+|.|||+||..||.+|+.. ..+||+|+.+++..++++
T Consensus 209 ~~c~i~~~~~~-dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 209 LCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp TBCTTTCSBCS-SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cCCcCcCCHhc-CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 67999999986 6999999999999999999975 455999999998665544
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=7.3e-11 Score=88.68 Aligned_cols=51 Identities=24% Similarity=0.663 Sum_probs=44.1
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC------CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN------DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~------~~~CPvC~~~l~~~div~ 52 (302)
+.|+||+..+. +++++.|||+||..|+..|+.. ...||.|++.+...++.+
T Consensus 20 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 76 (85)
T 2ecv_A 20 VTCPICLELLT-QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76 (85)
T ss_dssp CCCTTTCSCCS-SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCC
T ss_pred CCCCCCCcccC-CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCc
Confidence 47999999986 5888999999999999999865 789999999998766543
No 23
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=9.9e-11 Score=92.94 Aligned_cols=51 Identities=25% Similarity=0.725 Sum_probs=43.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCC---CCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSND---AACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~---~~CPvC~~~l~~~div~ 52 (302)
+.|+||+..+. .++++.|||+||..|+..|+... ..||+|+..+...++..
T Consensus 22 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (112)
T 1jm7_A 22 LECPICLELIK-EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQE 75 (112)
T ss_dssp TSCSSSCCCCS-SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBC
T ss_pred CCCcccChhhc-CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCc
Confidence 47999999886 68899999999999999998753 58999999998766544
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.02 E-value=2.7e-10 Score=90.69 Aligned_cols=47 Identities=28% Similarity=0.569 Sum_probs=42.1
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
+.|+||...+. +++++ .|||+||..|+..|+.....||+|+..+...
T Consensus 16 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 16 LMCVLCGGYFI-DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp TBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CCCccCChHHh-CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 57999999986 58887 9999999999999998889999999988754
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=9.3e-11 Score=85.09 Aligned_cols=47 Identities=28% Similarity=0.735 Sum_probs=40.4
Q ss_pred CccccCcccccC------CcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEG------RAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.|+||+..+.+ .++++.|||+||..|+.+|+.....||+|++.+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 469999998853 12899999999999999999888899999998753
No 26
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=89.67 Aligned_cols=45 Identities=27% Similarity=0.584 Sum_probs=39.6
Q ss_pred CccccCcccccCCcEEec-CCccccHHHHHhhhcC--CCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTT-CGHLLCTEDANKILSN--DAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~-CGHiFC~~Ci~~~~~~--~~~CPvC~~~l~ 46 (302)
+.|+||...+. +|+++. |||+||..|+..|+.. ...||+|++.+.
T Consensus 14 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 14 LLCLICKDIMT-DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TEETTTTEECS-SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCChhhc-CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 57999999886 699999 9999999999999863 469999999874
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.01 E-value=1.3e-10 Score=87.06 Aligned_cols=52 Identities=19% Similarity=0.462 Sum_probs=44.4
Q ss_pred CccccCcccccC--CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEG--RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
+.|+||+..+.. ..+++.|||+||..|+.+|+.....||+|++.+...++..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 469999998863 3467799999999999999988899999999998876654
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.00 E-value=1.9e-10 Score=92.99 Aligned_cols=57 Identities=26% Similarity=0.686 Sum_probs=48.5
Q ss_pred CccccCcccccCCc-------EEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccccCCC
Q 022126 1 MRCNACWRELEGRA-------ISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVDINPN 58 (302)
Q Consensus 1 l~CNiC~~~l~~~~-------vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~LnPs 58 (302)
+.|+||+..+.+ + +++.|||+||..|+.+|+.....||+|++.+...++.++.++..
T Consensus 8 ~~C~IC~~~~~~-~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~ 71 (133)
T 4ap4_A 8 VSCPICMDGYSE-IVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSG 71 (133)
T ss_dssp CBCTTTCCBHHH-HHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSS
T ss_pred CCCcccChhhhC-ccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCC
Confidence 579999998863 4 99999999999999999998899999999998877766555433
No 29
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=96.78 Aligned_cols=47 Identities=21% Similarity=0.587 Sum_probs=41.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCC-CCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSND-AACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~-~~CPvC~~~l~~~ 48 (302)
+.|+||...+. +||+|.|||+||..|+..|+... ..||+|+..+...
T Consensus 79 ~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVY-QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCS-SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhc-CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 57999999886 69999999999999999999764 5899999998765
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=82.12 Aligned_cols=40 Identities=28% Similarity=0.737 Sum_probs=35.8
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc---CCCCCCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS---NDAACPIC 41 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~---~~~~CPvC 41 (302)
+.|+||+..+. +++++.|||+||..|+.+|+. ....||+|
T Consensus 21 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 21 VICPICLDILQ-KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CBCTTTCSBCS-SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCcCCchhC-CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 47999999986 699999999999999999987 46789998
No 31
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=85.09 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=42.3
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
+.|+||+..+.+ +++.|||+||..|+.+|+.....||+|++.+...+
T Consensus 16 ~~C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 16 EECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCSSSCCSCCS--EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCeeCCcCccC--cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 469999999875 89999999999999999988899999999987654
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.98 E-value=2.6e-10 Score=91.72 Aligned_cols=51 Identities=24% Similarity=0.514 Sum_probs=44.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
+.|+||...+. +|+++.|||+||..|+.+|+.. ...||+|+..+...+++.
T Consensus 24 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 24 ISCQICEHILA-DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp TBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCcHhc-CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccc
Confidence 57999999886 6999999999999999999876 779999999988766543
No 33
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.95 E-value=2.4e-10 Score=83.20 Aligned_cols=46 Identities=20% Similarity=0.627 Sum_probs=41.3
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|+||+..+.+.++++.|||+||..|+.+|+.....||+|++.+..
T Consensus 7 ~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 6999999987556899999999999999999888999999998864
No 34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.95 E-value=2.4e-10 Score=92.61 Aligned_cols=50 Identities=26% Similarity=0.624 Sum_probs=42.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCC-CCCCCCccccccCCCc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSND-AACPICDQVLSKSLMK 51 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~-~~CPvC~~~l~~~div 51 (302)
+.|+||...+. .++++.|||+||..|+.+|+... ..||+|+..+...+++
T Consensus 19 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 69 (118)
T 3hct_A 19 YECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF 69 (118)
T ss_dssp GBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred CCCCcCChhhc-CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcc
Confidence 47999999886 69999999999999999998764 4999999998765543
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=4.6e-10 Score=82.07 Aligned_cols=46 Identities=26% Similarity=0.557 Sum_probs=40.6
Q ss_pred ccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|+||+..+. ..++++.|||+||..|+.+|+.....||+|++.+..
T Consensus 16 ~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp SBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 6999999885 357889999999999999999888899999998764
No 36
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=2.9e-10 Score=89.20 Aligned_cols=51 Identities=22% Similarity=0.561 Sum_probs=42.4
Q ss_pred CccccCcccccCCcEEec-CCccccHHHHHhhhcC------CCCCCC--Cccc-cccCCCcc
Q 022126 1 MRCNACWRELEGRAISTT-CGHLLCTEDANKILSN------DAACPI--CDQV-LSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~-CGHiFC~~Ci~~~~~~------~~~CPv--C~~~-l~~~div~ 52 (302)
|.|+||...|. +||++. |||+||..||..||.. ..+||+ |.+. +...++++
T Consensus 8 ~~CPI~~~~~~-dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 8 FTCPITKEEMK-KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp CBCTTTCSBCS-SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred eECcCcCchhc-CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 68999999986 699995 9999999999999864 368999 8877 76655543
No 37
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.93 E-value=3.5e-10 Score=78.90 Aligned_cols=45 Identities=29% Similarity=0.623 Sum_probs=39.9
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|+||+..+.+ .++++.|||+||..|+.+|+.....||+|++.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 69999998853 4788999999999999999988899999999764
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=4.5e-10 Score=95.77 Aligned_cols=46 Identities=26% Similarity=0.661 Sum_probs=40.7
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcC-CCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSN-DAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~ 47 (302)
+.|+||...+. .++++ .|||+||..|+.+|+.. ...||+|+..+..
T Consensus 55 ~~C~IC~~~~~-~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 36999999986 58877 99999999999999986 7889999998864
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.91 E-value=4.6e-10 Score=98.75 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=44.3
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. +||++.|||+||..||..|+.. ..+||+|+.+++..++++
T Consensus 107 f~CPI~~elm~-DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p 158 (179)
T 2f42_A 107 LCGKISFELMR-EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP 158 (179)
T ss_dssp GBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred hcccCccccCC-CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence 57999999996 6999999999999999999975 457999999998766554
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.91 E-value=2.6e-10 Score=91.68 Aligned_cols=46 Identities=24% Similarity=0.652 Sum_probs=40.7
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~ 47 (302)
+.|+||+..+. +|+++.|||+||..|+.+|+.. ...||.|++.+..
T Consensus 16 ~~C~iC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILV-EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCS-SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCccCCcccC-ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 46999999886 6999999999999999999876 7789999998763
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=6.4e-10 Score=78.25 Aligned_cols=40 Identities=28% Similarity=0.791 Sum_probs=35.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc---CCCCCCCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS---NDAACPIC 41 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~---~~~~CPvC 41 (302)
+.|+||+..+. +++++.|||+||..|+.+|+. ....||+|
T Consensus 16 ~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 16 ASCSVCLEYLK-EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CBCSSSCCBCS-SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCccCCcccC-ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 47999999986 588999999999999999954 46789998
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.90 E-value=1.1e-09 Score=83.73 Aligned_cols=56 Identities=20% Similarity=0.442 Sum_probs=43.8
Q ss_pred CccccCccccc-CCcEEec--CCccccHHHHHhhhcC-CCCCCCCccccccCCCcccccC
Q 022126 1 MRCNACWRELE-GRAISTT--CGHLLCTEDANKILSN-DAACPICDQVLSKSLMKPVDIN 56 (302)
Q Consensus 1 l~CNiC~~~l~-~~~vvT~--CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~~~Ln 56 (302)
+.|+||...++ .++++.. |||.||..|+.++|.. ...||.|++.+...++....+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 46999999885 2344544 9999999999999854 6789999999988776554443
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=3.6e-10 Score=91.44 Aligned_cols=47 Identities=21% Similarity=0.633 Sum_probs=40.5
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
+.|+||...+. +||++ .|||+||..|+..|+. ..||+|++.+...++
T Consensus 23 ~~C~IC~~~~~-~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~ 70 (117)
T 1jm7_B 23 LRCSRCTNILR-EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDL 70 (117)
T ss_dssp TSCSSSCSCCS-SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSC
T ss_pred CCCCCCChHhh-CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccc
Confidence 57999999886 58888 9999999999999986 889999998865443
No 44
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=80.42 Aligned_cols=46 Identities=20% Similarity=0.462 Sum_probs=39.7
Q ss_pred ccccCcccccC--CcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEG--RAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|+||+..+.. ..+++.|||+||..|+.+|+.....||+|++.+..
T Consensus 17 ~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp BCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 69999999863 35566999999999999999888899999998764
No 45
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.85 E-value=1.3e-09 Score=76.09 Aligned_cols=46 Identities=30% Similarity=0.663 Sum_probs=38.9
Q ss_pred CccccCcccccC--CcEEec-CCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 1 MRCNACWRELEG--RAISTT-CGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~-CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
..|+||+..+.. .++++. |||+||..|+.+|+.....||+|++.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 369999999863 356665 9999999999999988899999998753
No 46
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.84 E-value=1.3e-09 Score=79.64 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=48.7
Q ss_pred CccccCcccccCCcEEe-cCCccccHHHHHhhhcCCCCCCCCccccccCCCccccc
Q 022126 1 MRCNACWRELEGRAIST-TCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVDI 55 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT-~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~L 55 (302)
|.|+||.+.+. +||++ .|||+||+.||.+|+....+||+++.+|+..+++++..
T Consensus 4 ~~CpIs~~~m~-dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 4 MLCAISGKVPR-RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp CCCTTTCSCCS-SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred EEecCCCCCCC-CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 68999999996 69999 99999999999999987678999999999999887654
No 47
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.84 E-value=1.5e-09 Score=84.32 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=39.5
Q ss_pred ccccCcccccC--CcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEG--RAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|.||+..+.. .++++.|||+||..|+..|+.....||+|++.+.
T Consensus 42 ~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp EETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 59999998852 3667899999999999999988889999999875
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=1.2e-09 Score=88.10 Aligned_cols=53 Identities=26% Similarity=0.708 Sum_probs=45.2
Q ss_pred CccccCcccccC------CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCccc
Q 022126 1 MRCNACWRELEG------RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPV 53 (302)
Q Consensus 1 l~CNiC~~~l~~------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~ 53 (302)
+.|+||...+.. ..+++.|||+||..|+.+|+.....||+|++.+..+++.++
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 368899988752 23899999999999999999989999999999998877654
No 49
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=1.4e-09 Score=80.97 Aligned_cols=46 Identities=24% Similarity=0.502 Sum_probs=39.6
Q ss_pred ccccCcccccC--CcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEG--RAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|+||+..+.. ..+++.|||+||..|+.+|+.....||+|++.+..
T Consensus 25 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp EETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 59999998863 24678899999999999999888899999998754
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=91.18 Aligned_cols=46 Identities=30% Similarity=0.577 Sum_probs=40.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCC-CCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSND-AACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~-~~CPvC~~~l~~ 47 (302)
+.|+||...+. .||+|.|||+||..|+.+|+... ..||+|+..+..
T Consensus 32 ~~C~IC~~~~~-~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 32 YLCSACRNVLR-RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GBCTTTCSBCS-SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCCCCCChhhc-CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 47999999986 69999999999999999998754 589999997643
No 51
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.77 E-value=3e-09 Score=84.95 Aligned_cols=46 Identities=20% Similarity=0.429 Sum_probs=37.7
Q ss_pred ccccCcccccC-----------------CcEEecCCccccHHHHHhhh-----cCCCCCCCCcccccc
Q 022126 2 RCNACWRELEG-----------------RAISTTCGHLLCTEDANKIL-----SNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~-----------------~~vvT~CGHiFC~~Ci~~~~-----~~~~~CPvC~~~l~~ 47 (302)
.|+||+..|.. ..+++.|||+||..||..|+ .....||+|++.+..
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 59999999853 12278899999999999998 346799999998864
No 52
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.76 E-value=2.5e-09 Score=91.46 Aligned_cols=51 Identities=27% Similarity=0.664 Sum_probs=43.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC-CCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN-DAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~-~~~CPvC~~~l~~~div~ 52 (302)
|.|+||...+. .||++.|||+||..|+.+|+.. ...||+|+..+...++++
T Consensus 19 ~~C~IC~~~~~-~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 19 YECPICLMALR-EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp GBCTTTCSBCS-SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCChhhc-CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 57999999986 6999999999999999999875 459999999987765543
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=4.9e-09 Score=79.88 Aligned_cols=47 Identities=17% Similarity=0.413 Sum_probs=37.5
Q ss_pred ccccCcccccC-------------CcE-EecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEG-------------RAI-STTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~-------------~~v-vT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|.||+..+.+ .++ ++.|||+|+..||.+|+....+||+|++.+...
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 47888887743 144 445999999999999999888999999987543
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=1.7e-09 Score=76.92 Aligned_cols=43 Identities=28% Similarity=0.615 Sum_probs=37.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.|.||...+. +++++.|||+||..|+.. ....||+|++.+..
T Consensus 7 ~~C~IC~~~~~-~p~~l~CgH~fC~~Ci~~---~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 7 LRCQQCQAEAK-CPKLLPCLHTLCSGCLEA---SGMQCPICQAPWPL 49 (56)
T ss_dssp SSCSSSCSSCB-CCSCSTTSCCSBTTTCSS---SSSSCSSCCSSSSC
T ss_pred CCceEeCCccC-CeEEcCCCCcccHHHHcc---CCCCCCcCCcEeec
Confidence 57999999886 589999999999999877 36789999998764
No 55
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.69 E-value=5.2e-09 Score=97.12 Aligned_cols=51 Identities=22% Similarity=0.490 Sum_probs=43.2
Q ss_pred CccccCcccccCCcEE-ecCCccccHHHHHhhhcC--CCCCCC--CccccccCCCcc
Q 022126 1 MRCNACWRELEGRAIS-TTCGHLLCTEDANKILSN--DAACPI--CDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv-T~CGHiFC~~Ci~~~~~~--~~~CPv--C~~~l~~~div~ 52 (302)
|.|+||...|. +||+ +.|||+||..||.++|.. ...||+ |++.+...++++
T Consensus 182 l~CPIcl~~f~-DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 182 LTCPITCKPYE-APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp SBCTTTSSBCS-SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eECcCccCccc-CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 68999999996 6987 499999999999999975 468999 999887666544
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.62 E-value=1.5e-08 Score=75.91 Aligned_cols=42 Identities=29% Similarity=0.704 Sum_probs=37.4
Q ss_pred CccccCcccccCCcEEecCCcc-ccHHHHHhhhcCCCCCCCCcccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHL-LCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.|.||+..+. +++++.|||. ||..|+.++ ..||+|++.+..
T Consensus 25 ~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI-AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC-CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46999999885 6999999999 999999887 799999998865
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=3.6e-08 Score=73.79 Aligned_cols=41 Identities=29% Similarity=0.732 Sum_probs=36.0
Q ss_pred ccccCcccccCCcEEecCCcc-ccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHL-LCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|.||+..+. +++++.|||. ||..|+.+. ..||+|+..+..
T Consensus 27 ~C~IC~~~~~-~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 27 LCKICMDRNI-AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 68 (75)
T ss_dssp SCSSSCSSCC-CBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCcCCCCCC-CEEEecCCCHHHHHHHhhCC----CCCccCCceecC
Confidence 6999999885 6899999999 999999753 789999999875
No 58
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.49 E-value=5.8e-08 Score=70.75 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=38.7
Q ss_pred ccccCcccccCCcEEe--cCCcc-ccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAIST--TCGHL-LCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT--~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|.||+.... ++++. .|||. ||..|+.+++.....||+|++++..
T Consensus 9 ~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 9 PCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp BCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred CCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 5999999875 46666 99998 9999999998888899999998853
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.48 E-value=9.1e-08 Score=77.15 Aligned_cols=45 Identities=16% Similarity=0.390 Sum_probs=38.4
Q ss_pred ccccCcccccCC-----------------cEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGR-----------------AISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~-----------------~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|.||+..|.+. .+++.|||+|+..||..|+....+||+|++.+.
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 488999887532 456889999999999999998999999999764
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.47 E-value=6.4e-08 Score=70.75 Aligned_cols=44 Identities=27% Similarity=0.610 Sum_probs=38.7
Q ss_pred ccccCcccccCCcEEe--cCCcc-ccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAIST--TCGHL-LCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT--~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|.||+.... ++++. .|||. ||..|+.+++.....||+|++.+.
T Consensus 10 ~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 5999999876 46766 99999 899999999888889999999875
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=5.8e-08 Score=75.46 Aligned_cols=44 Identities=20% Similarity=0.536 Sum_probs=34.4
Q ss_pred CccccCcccccCCcEE--ecCCccccHHHHHhhhcC--------CCCCCC--Cccc
Q 022126 1 MRCNACWRELEGRAIS--TTCGHLLCTEDANKILSN--------DAACPI--CDQV 44 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv--T~CGHiFC~~Ci~~~~~~--------~~~CPv--C~~~ 44 (302)
+.|+||+..+.....+ +.|||.||..|+..++.. ...||. |+..
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5799999988643222 369999999999998752 247999 9987
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.34 E-value=1.9e-07 Score=71.04 Aligned_cols=42 Identities=26% Similarity=0.667 Sum_probs=36.9
Q ss_pred ccccCcccccCCcEEecCCcc-ccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAISTTCGHL-LCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|.||+..+. +++++.|||. ||..|+..+ ..||+|+..+...
T Consensus 20 ~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 20 LCMVCCEEEI-NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV 62 (79)
T ss_dssp BCTTTSSSBC-CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred EeEEeCcccC-cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence 6999998875 6999999999 999999876 3999999998763
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.22 E-value=1.6e-07 Score=77.26 Aligned_cols=45 Identities=16% Similarity=0.405 Sum_probs=0.0
Q ss_pred ccccCcccccC-----------------CcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEG-----------------RAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~-----------------~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|.||+..|.+ ..+.+.|||+|+..||.+|+.....||+|++.+.
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp --------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 48899988753 1233689999999999999988899999999754
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=5.8e-07 Score=66.58 Aligned_cols=41 Identities=24% Similarity=0.615 Sum_probs=35.9
Q ss_pred ccccCcccccCCcEEecCCcc-ccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHL-LCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHi-FC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|.||+.... +++++.|||. ||..|+... ..||+|++.+..
T Consensus 17 ~C~IC~~~~~-~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 17 DCVVCQNGTV-NWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSSSSSCC-CCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCC
T ss_pred CCCCcCcCCC-CEEEECCCChhhhHHHHhcC----CCCCCCCcchhc
Confidence 6999998875 6999999999 999999853 789999998865
No 65
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.85 E-value=8e-06 Score=65.53 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=40.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
-|.+|.-++....-+..|.|+||.+|+..+.+ .+..||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48899999976677999999999999999875 58899999998754
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.1e-05 Score=61.85 Aligned_cols=46 Identities=17% Similarity=0.444 Sum_probs=39.1
Q ss_pred ccccCccccc-CCcEEecCC-----ccccHHHHHhhhcC--CCCCCCCcccccc
Q 022126 2 RCNACWRELE-GRAISTTCG-----HLLCTEDANKILSN--DAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~CG-----HiFC~~Ci~~~~~~--~~~CPvC~~~l~~ 47 (302)
.|.||+..+. +.++++.|+ |.|...|+.+|+.. ...||+|+..+..
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 5999998875 468899996 99999999999875 4699999998754
No 67
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=5.7e-05 Score=57.25 Aligned_cols=46 Identities=24% Similarity=0.492 Sum_probs=37.8
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCC--CCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSND--AACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~--~~CPvC~~~l~~ 47 (302)
.|.||+..+...-.-..|+|.|=..|+.+||... .+||.|++.+..
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5999999886433334899999999999999765 899999998753
No 68
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.74 E-value=0.0011 Score=52.57 Aligned_cols=52 Identities=29% Similarity=0.613 Sum_probs=43.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVD 54 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~ 54 (302)
+-|-.||... +-.|+-..|.+|..|+...++.+..||+|+++|..+-.+.+.
T Consensus 29 ~nCKsCWf~~--k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~ 80 (99)
T 2ko5_A 29 QFCKSCWFEN--KGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAA 80 (99)
T ss_dssp CCCCSSCSCC--SSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTS
T ss_pred ccChhhcccc--CCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceecCcC
Confidence 3588999765 477888899999999999999999999999999776554443
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=96.11 E-value=0.026 Score=46.41 Aligned_cols=69 Identities=17% Similarity=0.304 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL----------QEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL----------q~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
....|+..+.+++++++...+..+....|++.|+.++++| +.+|.|-.++-+..++-|.+||..|..++
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELV 119 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666655444444455666666666666 77888888888899999999999887664
No 70
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.72 E-value=0.13 Score=39.55 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE-------KSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E-------KsRq~~qLqelYdkLK~~~e 176 (302)
++++.|+.+-.++..++-|++.||.+|..|...-.+ ..++..+|++-...-..++.
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555566666666666666555555 55666666665555555543
No 71
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=95.10 E-value=0.13 Score=42.01 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++||+.+..+=+.+++...+-...||++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333333344444
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.95 E-value=0.014 Score=42.01 Aligned_cols=44 Identities=30% Similarity=0.529 Sum_probs=35.1
Q ss_pred ccccCcccccCCcEEecCC--c---cccHHHHHhhhcC--CCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCG--H---LLCTEDANKILSN--DAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CG--H---iFC~~Ci~~~~~~--~~~CPvC~~~l~ 46 (302)
.|-||+... +.+++..|. | .|=..|+.+|+.. ...||+|+..+.
T Consensus 8 ~CrIC~~~~-~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 8 VCWICNEEL-GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp EETTTTEEC-SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred EeEEeecCC-CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 488999875 456788865 4 8899999999863 689999999764
No 73
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=94.77 E-value=0.22 Score=39.85 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
++..++.+...+.+|++.|+||+|++.++.-.++.|+.++..++.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455556666777888877777777777777766544
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.72 E-value=0.94 Score=35.71 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=56.4
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 106 QKCEAMQEK---FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 106 eK~e~L~~~---l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++++.++.. ......+++..+..|++|++.++.+++.......+.+.++++..+.....+.-...|-+++.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433 34566678888999999999999999999999999999999999888877777777777744
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.66 E-value=0.012 Score=45.51 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.3
Q ss_pred CccccCcccccCCcEE--ecCCccccHHHHHhh
Q 022126 1 MRCNACWRELEGRAIS--TTCGHLLCTEDANKI 31 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv--T~CGHiFC~~Ci~~~ 31 (302)
+.|.+|...+...|+. ..|||.||..|+..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4799999754446777 899999999999983
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.46 E-value=0.79 Score=45.13 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+..+....++..++.+++.+.+.+.+++++.++.+++++..++..++++-.+.+++++.++...
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 517 RQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555566666667777777777777777777777777777776555443
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=94.32 E-value=2 Score=41.26 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=10.7
Q ss_pred HhcC-CChHHHHHHHHHhh
Q 022126 65 AMAG-VSPQILMKSAYRSV 82 (302)
Q Consensus 65 vL~G-lsP~~Ime~a~RAi 82 (302)
++.| .+|+.+++.+...+
T Consensus 364 vl~G~~t~eeal~~~~~~i 382 (471)
T 3mq9_A 364 AASGRQTVDEALKDAQTRI 382 (471)
T ss_dssp HHHSSSCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH
Confidence 4555 57777775554443
No 78
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=94.13 E-value=3.1 Score=40.24 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 022126 166 EMYDQLRSEYESMKRSAIQP 185 (302)
Q Consensus 166 elYdkLK~~~e~~~rsa~~~ 185 (302)
+.|+++..+++++....+.|
T Consensus 179 e~ye~qqKQL~qv~a~~llP 198 (390)
T 1deq_A 179 EDYKNQQKQLEQVIAINLLP 198 (390)
T ss_pred HHHHHHHHHHHhhhhhcccc
Confidence 56777777787776655444
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.77 E-value=2.7 Score=36.97 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 103 QCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 103 ~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
.+.+....|+..+...+.+++.....|+.++..+..|++..|.|+..+
T Consensus 35 EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 35 EFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455666666666666655555555555555555555544444
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.71 E-value=0.69 Score=38.62 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.|...+.+++.|+..|+.++.+++.++++-.+++.+|++-++.|..+
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444444443
No 81
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=93.00 E-value=0.91 Score=36.79 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
++++++...|||...+..-.-.|=..+..-|++-.+=||.-++
T Consensus 65 ~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he 107 (119)
T 3ol1_A 65 EEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443334444445555555555554444
No 82
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.66 E-value=2.8 Score=32.76 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.....+++..+..+++|+..++.+++.......+++.++++..+...+-+.-...|-+++.
T Consensus 36 e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 36 EDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888999999999999999999999999999988888877777777777743
No 83
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.50 E-value=1.1 Score=37.43 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
..+.+...++..|++++.+.+-+.+.+++++.+|++++.+=.++..+|+.
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566666666666666666666666666666666666653
No 84
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.35 E-value=2.5 Score=31.77 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
...+++..+..|++|++.++.+++.......+.+.+|++..+
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666666666666666665544
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=91.94 E-value=0.084 Score=42.29 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=41.9
Q ss_pred CccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|..|.+.|. +..+...=|.+||..|..+.+.....|-.|++++...+++.
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~~~ 86 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDVMV 86 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEESSS
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchheEE
Confidence 57899999995 24566778999999999998766668999999998766543
No 86
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.86 E-value=1.9 Score=36.45 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
..+.++...+..+..++..++.+++.++....+++..+.+...++.+++.-...++.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (284)
T 1c1g_A 34 DRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQ 93 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555556666666666666666666555555555555555555443
No 87
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.72 E-value=3.3 Score=36.35 Aligned_cols=18 Identities=17% Similarity=0.206 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022126 159 RQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 159 Rq~~qLqelYdkLK~~~e 176 (302)
|+.+.+..-+..+..+++
T Consensus 123 r~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 123 RAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 333333333333433433
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=91.64 E-value=3.5 Score=32.91 Aligned_cols=64 Identities=6% Similarity=0.185 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.++++--..+.=+++.|+.++.+++....+++|++.|..+.++--.|.+..|+.-++.|+.++.
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433344445666777778888888888888888888888888888888888888887743
No 89
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.62 E-value=0.69 Score=34.93 Aligned_cols=43 Identities=7% Similarity=0.241 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
+..++.++....+....+-..+..-.|+++.|++-++++..++
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444444444443
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.57 E-value=1.6 Score=43.87 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHhhc
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD------------------------EMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq------------------------elYdkLK~~~e~~~rsa~ 183 (302)
.|.+++..|+.++++.-..+.-||..+++---+.++|+ +-|+.+.++++++-...+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhccc
Confidence 34455555555555555666666666666666666665 457888899998877666
Q ss_pred CC
Q 022126 184 QP 185 (302)
Q Consensus 184 ~~ 185 (302)
.|
T Consensus 194 ~p 195 (562)
T 3ghg_A 194 LP 195 (562)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 91
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.41 E-value=0.56 Score=45.42 Aligned_cols=57 Identities=16% Similarity=0.321 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++.+++.++..++.+..+++.+++.++.++.+|.++|.+.....++|.+.+..||-+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 455666667777777888888889999999999999998888888887777777655
No 92
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=91.35 E-value=0.21 Score=39.75 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=39.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
|.|..|.+.|.+..+...=|.++|..|..+.+ ...|..|++++...
T Consensus 31 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 31 FCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDPE 76 (126)
T ss_dssp SBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCTT
T ss_pred CCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCcC
Confidence 67889999998777888889999999998763 56899999998754
No 93
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.24 E-value=4.9 Score=33.88 Aligned_cols=11 Identities=0% Similarity=0.120 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022126 121 QVHTAYQKMAK 131 (302)
Q Consensus 121 e~~s~~~kl~~ 131 (302)
++...+..+..
T Consensus 45 ~~~~~~~~~~~ 55 (284)
T 1c1g_A 45 SLQKKLKATED 55 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.08 E-value=0.92 Score=54.37 Aligned_cols=61 Identities=13% Similarity=0.271 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
++.+++.++++.+.++.+.+.++..+..++++|+++|++..+++++|++-.+..+.+++.+
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777888888888999999999999999998888888887777665533
No 95
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=90.25 E-value=2.6 Score=33.50 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK---------------------SRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK---------------------sRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+|..+..++.+++.|.+.|++++.+|--+++-+ +--+++.++..++|+.+++.+|..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777888888888888888877777541 123445567777777777766654
No 96
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.20 E-value=5.6 Score=32.09 Aligned_cols=8 Identities=0% Similarity=0.327 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022126 162 RKLDEMYD 169 (302)
Q Consensus 162 ~qLqelYd 169 (302)
.-++..||
T Consensus 80 eD~E~k~n 87 (111)
T 2v66_B 80 EDFEQRLN 87 (111)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 97
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.12 E-value=5.6 Score=34.32 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
..+...+..++.....|+.++..++.+.+.|.+++-.||..+.+--+-..+..+++..|
T Consensus 37 tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~el 95 (168)
T 3o0z_A 37 TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDL 95 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555566666666777777777777777777766555555444444433
No 98
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.97 E-value=3.9 Score=39.38 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.2
Q ss_pred HHHhHHHHH
Q 022126 143 LSKDKQELQ 151 (302)
Q Consensus 143 LrKkn~ELq 151 (302)
++++++.|+
T Consensus 447 ~~~~~~~~~ 455 (487)
T 3oja_A 447 LAEENARLK 455 (487)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhhh
Confidence 333333333
No 99
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=89.87 E-value=4.5 Score=31.57 Aligned_cols=73 Identities=16% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQ----EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~----E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
+..+|++.+......|+.+++.+..+.. .-++|.+-.+.+.+-|-.=+-+...|++-.+.+|.+|-+.||...
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~ 89 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFL 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555544444332 125678888888888999999999999999999999999988755
No 100
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.85 E-value=11 Score=36.73 Aligned_cols=30 Identities=10% Similarity=0.202 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+++++.+.+.++.+.+.++++.+++++.|+
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (597)
T 3oja_B 511 FTHLKERQAFKLRETQARRTEADAKQKETE 540 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhhhcchh
Confidence 333333444444444444444444444444
No 101
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=89.77 E-value=3.4 Score=37.09 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE--KSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E--KsRq~~qLqelYdkLK~~~e 176 (302)
..+++.+...+..++.+++.++.+....++++.. ..|++..|+.-.+.++.+..
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444433332 23555555555555555543
No 102
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=89.70 E-value=0.24 Score=37.70 Aligned_cols=46 Identities=17% Similarity=0.457 Sum_probs=37.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+ ...|..|++.+...
T Consensus 34 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 34 FRCAKCLHPLANETFVAKDNKILCNKCTTRED--SPKCKGCFKAIVAG 79 (101)
T ss_dssp CCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--CCBCSSSCCBCCSS
T ss_pred CcccccCCCCCcCeeECcCCEEEChhHhhhhc--CCccccCCCccccC
Confidence 67889999997666777789999999987653 56899999998743
No 103
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=89.51 E-value=7 Score=38.98 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.+-...++|.+..++.|.+.+.+|+.+-.|+++=-+-|++=+++|
T Consensus 41 a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY 85 (497)
T 3iox_A 41 AANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADY 85 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344557778888888888888888777666655545555544444
No 104
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.50 E-value=7.2 Score=31.44 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+.++++..|+..+..+..+.+.+.+.+-+|-.+=-|=.|+.+-...-...+-++|.
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 33333444444444333333444333333333333334444444444444444444
No 105
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.43 E-value=1.1 Score=33.71 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 143 LSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 143 LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
....+.+|...+.||...+++|+.-+|++++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334566666677777777777766666643
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=88.90 E-value=3.9 Score=31.87 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=11.4
Q ss_pred HHHHhcCCChHHHHH
Q 022126 62 VNMAMAGVSPQILMK 76 (302)
Q Consensus 62 Kt~vL~GlsP~~Ime 76 (302)
.+..|.|++.+.|+.
T Consensus 11 LN~~L~gls~eev~~ 25 (90)
T 2wt7_B 11 LNRHLRGFTKDEVIR 25 (90)
T ss_dssp HHTTCTTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 445678999999883
No 107
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.86 E-value=0.27 Score=52.77 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=44.6
Q ss_pred CccccCcccccCCcEEecCC-ccccHHHHHhhhcCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCG-HLLCTEDANKILSNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CG-HiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~ 52 (302)
|.|+|....+. +||++..| |.+=..+|.+|+....+||.-+.+|+..++++
T Consensus 892 F~cPIs~~lM~-DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 892 FLDPLMYTIMK-DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp GBCTTTCSBCS-SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred hCCcchhhHHh-CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 57999998886 69999998 58999999999988889999999998766655
No 108
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.56 E-value=2.8 Score=35.70 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=15.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 140 IESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 140 ~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++.++.++..|+-.+..-..+.++|+.-++.|..+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444555545444433
No 109
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=88.23 E-value=0.33 Score=38.69 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=39.5
Q ss_pred CccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 1 MRCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
|.|..|.+.|. +..+...=|.++|..|..+.+.....|..|++.+...+
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~e 80 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYE 80 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECTTS
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCccc
Confidence 67889999995 35677788999999999988755558999999886533
No 110
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.15 E-value=4.2 Score=34.56 Aligned_cols=58 Identities=17% Similarity=0.286 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEK---LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~k---i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
.+++.++..++..+..| ++.++.+|..|+-.+..++..+..|+++|.+|.+.|.++..
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666555443 45566777777778888888999999999999888876543
No 111
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.80 E-value=3 Score=31.95 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++.+...-..+..|+++++...++++.||++--...+.+++-+..||+-++
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333334455556666666666666666666666666666655555443
No 112
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=87.71 E-value=0.25 Score=42.36 Aligned_cols=48 Identities=29% Similarity=0.699 Sum_probs=38.1
Q ss_pred CccccCcccccC--CcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 1 MRCNACWRELEG--RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
|.|..|.+.|.. ..+...=|.+||..|..+.+.....|..|++.+...
T Consensus 33 F~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGACSACGQSIPAS 82 (188)
T ss_dssp CBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCCEECTTTCCEECTT
T ss_pred cccCCCCcccccCCceEEEeCCccccccccccccccCCccccCCCccccC
Confidence 678899998863 566777899999999988765444799999988653
No 113
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.25 E-value=9 Score=29.82 Aligned_cols=67 Identities=22% Similarity=0.398 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+..+-..+.+++..-..+...+..++.+.+.|..+-.++-..|.+-.+++..+++--++|..+|..+
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777778888888888888888888999999999999999999998887643
No 114
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.60 E-value=9.1 Score=29.24 Aligned_cols=13 Identities=31% Similarity=0.565 Sum_probs=6.2
Q ss_pred HHHHHHhHHHHHH
Q 022126 140 IESLSKDKQELQE 152 (302)
Q Consensus 140 ~e~LrKkn~ELq~ 152 (302)
.+.|.++|+-|++
T Consensus 50 ~~~L~~en~qLk~ 62 (81)
T 2jee_A 50 REELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3335555555543
No 115
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=85.97 E-value=5.9 Score=32.04 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=16.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 141 ESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.-++++.+|...+..-...+..|+..|.++|+.
T Consensus 41 E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~ 74 (112)
T 1x79_B 41 EDSSHQISALVLRAQASEILLEELQQGLSQAKRD 74 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455445444443
No 116
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.17 E-value=15 Score=37.03 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 103 QCRQKCEAMQEKFTEK 118 (302)
Q Consensus 103 ~lreK~e~L~~~l~~k 118 (302)
.|+.++++|++++..+
T Consensus 114 ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 117
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.87 E-value=4.2 Score=28.46 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
++.+++.++..|..+|..|.+.+.+-.-|+.+|.+-.++|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777888888888888888887777777777666665
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=84.33 E-value=15 Score=29.80 Aligned_cols=45 Identities=18% Similarity=0.363 Sum_probs=23.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
..+.+|+..+.+|...+.+..+..++...--+.||.+.+.+++..
T Consensus 40 ~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~ 84 (120)
T 3i00_A 40 RVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQR 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555555555555555444554445556666666554443
No 119
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=84.28 E-value=5.5 Score=35.92 Aligned_cols=48 Identities=17% Similarity=0.371 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..++.++..+++.++..+.+++.++..+++-.++..++.|-||++--+
T Consensus 174 ~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T 3q0x_A 174 SEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 344445566666666667777777777888888888999999987654
No 120
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.25 E-value=1.7 Score=30.55 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
+.|+..+++++.+.+.|+++++||+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 121
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=84.19 E-value=34 Score=33.81 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 160 QKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 160 q~~qLqelYdkLK~~~e 176 (302)
.++.|+..++.|+.++.
T Consensus 169 ~i~~L~~~~~~l~~ki~ 185 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQ 185 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 122
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.68 E-value=5.2 Score=27.71 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+++.+...++.|..|+++++..++.+.++++-|+..++
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 33444444445555555665555555555555555544
No 123
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=83.03 E-value=0.97 Score=32.62 Aligned_cols=43 Identities=12% Similarity=0.210 Sum_probs=29.8
Q ss_pred CccccCcccccCCcEEecCCccccH-HHHHhhhcCCCCCCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCT-EDANKILSNDAACPICDQVL 45 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~-~Ci~~~~~~~~~CPvC~~~l 45 (302)
|.|..|.+.|.+..+...=|.+||. .|..+.+ ...|-.|+..+
T Consensus 28 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 5677888888755566667888888 5876653 45677777543
No 124
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=82.88 E-value=0.021 Score=44.27 Aligned_cols=67 Identities=16% Similarity=0.400 Sum_probs=42.7
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhhh-------cCCCCCCCCccccccCC-CcccccCCChHHHHHHhcC
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKIL-------SNDAACPICDQVLSKSL-MKPVDINPNDEWVNMAMAG 68 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~-------~~~~~CPvC~~~l~~~d-iv~~~LnPse~~Kt~vL~G 68 (302)
.|.+|...|+- .--=-.||++||..|..... ...+.|-.|-..+.... .-.....|.+.|+..+-+|
T Consensus 11 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~~~~~~~~~pP~~~~~~~~~~ 88 (88)
T 1wfk_A 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSDNASKWSPPQNYKSGPSSG 88 (88)
T ss_dssp BCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCCCCCSSSCCCSCCSSSSCCC
T ss_pred CCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcccccccccCCCHHHHhhccCC
Confidence 58899988751 22235699999999987532 23567999988886543 2223335666666554443
No 125
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.82 E-value=14 Score=40.08 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky 154 (302)
++.|+.|...|++.+.||....
T Consensus 1025 v~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1025 VSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 126
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=82.68 E-value=9.9 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
.++++..|..-...+.++.+-..+++
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 127
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=82.43 E-value=1.1 Score=35.00 Aligned_cols=46 Identities=20% Similarity=0.504 Sum_probs=35.3
Q ss_pred ccccCccccc----CCcE--EecCCccccHHHHHhhhc-CCCCCCCCcccccc
Q 022126 2 RCNACWRELE----GRAI--STTCGHLLCTEDANKILS-NDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~----~~~v--vT~CGHiFC~~Ci~~~~~-~~~~CPvC~~~l~~ 47 (302)
.|.||...+. +.++ --.|+--.|..|..-... ....||.|++.+..
T Consensus 18 iCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 18 FCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp BCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred ccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 5999999863 2333 345888999999987654 47889999999864
No 128
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=82.24 E-value=1.4 Score=37.62 Aligned_cols=33 Identities=15% Similarity=0.419 Sum_probs=28.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 35 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 35 FLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 679999999986667777899999999998764
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.24 E-value=1.5 Score=31.16 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=23.2
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.+.. ..++..=|..|-..| +.|-.|++.|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x61_A 7 GCGGCGEDVVGDGAGVVALDRVFHVGC--------FVCSTCRAQLRGQ 46 (72)
T ss_dssp CCSSSCSCCCSSSCCEECSSSEECTTT--------CBCSSSCCBCTTS
T ss_pred CCccCCCccCCCceEEEECCCeEcccC--------CcccccCCcCCcC
Confidence 46677776653 345555566555544 4677777777543
No 130
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=82.15 E-value=9.5 Score=26.75 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
++.++.+.++.|..|+..|..+...++- +.+...+|-.|-...|.+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~---~v~~ak~eA~RAN~RlDN 50 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS---DAQAAKDDAARANQRADN 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhc
Confidence 5566666677777777777777777776 455777787787776654
No 131
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.90 E-value=15 Score=31.69 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
+++..+.++-+.|.+.+..|+.++++.|+...--.+...|-..+..-|++-.+.+|.++.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~ 114 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLE 114 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555554444444444444445555555555554433
No 132
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=81.62 E-value=1.4 Score=37.32 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=36.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
|.|..|.+.|.+..+ ..=|.+||..|..+.+ ...|..|++.+...+
T Consensus 88 F~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 88 LKCSDCHVPLAERCF-SRGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 133 (182)
T ss_dssp TSCTTTCCCCSSCCE-EETTEEECHHHHHHTT--SCCCTTTCCCCCSSC
T ss_pred CccCCCCCccCCCce-eECCEeeecCcccccc--ccccccCCCccCCCc
Confidence 678899999976555 4679999999988764 468999999886544
No 133
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.53 E-value=23 Score=29.95 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
++.++++.++-+.+++..++.+++.|..+...-+.+|.
T Consensus 85 kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 85 KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444443333333333
No 134
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=81.44 E-value=4.5 Score=34.97 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
...|.+-++..|+...|.+|+|++.+|-+.|+++..++..
T Consensus 10 ~~ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~ 49 (170)
T 3l4q_C 10 DSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQM 49 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4568888999999999999999999999999999887653
No 135
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=81.30 E-value=1.3 Score=27.33 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+++..-+.++++|..+|+.+.+||-.+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445778889999999999888655
No 136
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=81.18 E-value=1.2 Score=37.18 Aligned_cols=46 Identities=20% Similarity=0.530 Sum_probs=36.1
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
|.|..|.+.|.+..+ ..=|.+||..|..+.+ ...|..|++.+...+
T Consensus 34 F~C~~C~~~L~~~~f-~~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 34 LKCSDCHVPLAERCF-SRGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 79 (169)
T ss_dssp SBCTTTCCBCCSCCE-ESSSCEECHHHHHHHH--SCBCTTTCCBCCTTS
T ss_pred CccCCCCCcCCCCCc-ccCCeeeecccccccc--cccccccccccCCCc
Confidence 678899999976555 4679999999988765 468999998876544
No 137
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=81.15 E-value=4.5 Score=33.47 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
...++++|.-.+.+|++++.-.+.+ -.|-.|++.+||-.|++|=..|+..
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~-------~~eEKrkLAqLQ~AY~~LfqeYd~~ 102 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQA-------ASEEKRKLAQLQVAYHQLFQEYDNH 102 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666667777666655554 3345678999999999999999853
No 138
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=81.02 E-value=27 Score=33.71 Aligned_cols=16 Identities=6% Similarity=0.229 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKR 132 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~k 132 (302)
+..++++..|.-|+.+
T Consensus 113 e~s~eLe~~i~~lk~~ 128 (390)
T 1deq_A 113 QINEDLRSRIEILRRK 128 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 139
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=80.98 E-value=11 Score=26.31 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
++.+.|+++|--|.+.+++-+.++.||+.--..+|.=+
T Consensus 10 ~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevl 47 (54)
T 1deb_A 10 KQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHH
Confidence 45567777777777789999999999987776666543
No 140
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.85 E-value=18 Score=28.19 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
++..+++..++.+..+....+.|+..|.++++-|...+.
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666666666666665554444
No 141
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=80.38 E-value=2.8 Score=34.28 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
++.+|+.++++++|+++-|++.|.+|+.++++.=
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav 38 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFRKAC 38 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888999999999998888777653
No 142
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=80.37 E-value=24 Score=29.26 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
..+..++.+|+...+.|+.++.++...|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444
No 143
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.24 E-value=16 Score=36.18 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=6.6
Q ss_pred CCcCccccCCC
Q 022126 226 DIWPARQNSSN 236 (302)
Q Consensus 226 ~~~~~~~~~~~ 236 (302)
-||...||...
T Consensus 252 gGWtViQrR~d 262 (464)
T 1m1j_B 252 GGWTLIQNRQD 262 (464)
T ss_dssp SCEEEEEEESS
T ss_pred CCeEEEEEeec
Confidence 36766666544
No 144
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.18 E-value=26 Score=29.65 Aligned_cols=64 Identities=16% Similarity=0.360 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 107 KCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 107 K~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
|++.-...|.++|..+...++.+..+....+..+..|.+.+..|-+.+.....++..++.-.|.
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~ 130 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555555666666666666665555555555555444443
No 145
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.13 E-value=19 Score=27.94 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKR 162 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~ 162 (302)
++..+++..++.+..+....+.++..|+++++-|...+..-.-++.
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666777777777666655554433333
No 146
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=79.62 E-value=11 Score=31.85 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSE---KSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~E---KsRq~~qLqelYdkLK~~~e~~~ 179 (302)
..+...+++.+|.++++.++.+ -+=+|.+++.+.++|+.+..+++
T Consensus 73 sA~~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~ 120 (158)
T 3tul_A 73 TAKSVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAK 120 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433 22344555555555554444333
No 147
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.56 E-value=1.3 Score=31.33 Aligned_cols=39 Identities=21% Similarity=0.414 Sum_probs=24.4
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.+ .+++.-|..|...| +.|-.|++.|....
T Consensus 7 ~C~~C~~~I~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 7 GCHQCGEFIIG-RVIKAMNNSWHPEC--------FRCDLCQEVLADIG 45 (70)
T ss_dssp BCSSSCCBCCS-CCEEETTEEECTTT--------SBCSSSCCBCSSSC
T ss_pred cCccCCCEecc-eEEEECcccccccC--------CEeCCCCCcCCCCc
Confidence 47777777764 34566666665555 46777777776543
No 148
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.33 E-value=20 Score=28.45 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~~e 176 (302)
..+.+.|+.-.++|+.+..
T Consensus 64 ~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 149
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=78.89 E-value=7.9 Score=27.79 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
.+|+.+.+.|+.+|.+|......=.+++..|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333333
No 150
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=78.80 E-value=11 Score=31.95 Aligned_cols=102 Identities=15% Similarity=0.240 Sum_probs=49.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 76 KSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAM--QEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 76 e~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L--~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
.+..|+-..-.-|+...+..-.+ ..+-.+.-+ ...+.+.+.+++.-..+|+.-.+++..+.++++.+++.|..+
T Consensus 40 KI~yR~~~~i~iQktvR~~L~rk----khkPRi~g~~kv~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~k 115 (148)
T 3gn4_A 40 KIKYRAEACIKMQKTIRMWLCKR----RHKPRIDGLVKVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAK 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556665556666655432211 111111111 123333444444444444433345666777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 154 FSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 154 y~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
.+...=--.++++.|+.|..+.++...+
T Consensus 116 IK~~~i~~~~Id~~y~~lv~~~~~~l~~ 143 (148)
T 3gn4_A 116 IKSTMMTREQIQKEYDALVKSSAVLLSA 143 (148)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6543323357999999999998876544
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.73 E-value=1.2 Score=43.09 Aligned_cols=51 Identities=18% Similarity=0.417 Sum_probs=34.7
Q ss_pred CccccCcccccCCcE-EecCCccccHHH--HHhhh--cCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAI-STTCGHLLCTED--ANKIL--SNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~v-vT~CGHiFC~~C--i~~~~--~~~~~CPvC~~~l~~~div~ 52 (302)
|.|++-...+.. |+ ...|.|+-|.+- +.... .....||+|++.+...+++.
T Consensus 250 L~CPlS~~ri~~-PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 250 LQCPISYTRMKY-PSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp SBCTTTSSBCSS-EEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred ecCCCccccccc-cCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 579988877764 54 667999966543 22221 24779999999887766544
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.73 E-value=1.2 Score=31.64 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=26.6
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.+ ..++..-|..|-..| +.|-.|++.|....
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLVGRG 49 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCTTSC
T ss_pred CCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCCCCc
Confidence 57788887763 355666676665555 47888888876443
No 153
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=78.48 E-value=2.6 Score=29.59 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~E 156 (302)
.+.+.|+++|.||+.++++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443
No 154
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.42 E-value=1.2 Score=31.37 Aligned_cols=30 Identities=17% Similarity=0.438 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
+.|..++..++.|...|+.++..|++.|.+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~ 54 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLYSH 54 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445566666777777777776666554
No 155
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=78.35 E-value=17 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHT 124 (302)
Q Consensus 112 ~~~l~~ki~e~~s 124 (302)
+.-|..|++++..
T Consensus 30 E~~y~~k~eel~~ 42 (77)
T 3trt_A 30 EEWYKSKFADLSE 42 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 156
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=78.24 E-value=2.9 Score=32.35 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSE-----KSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~E-----KsRq~~qLqelYdkLK~~ 174 (302)
++.++..++.+.+.|.++..++..++.+ -.+++-++-.-||.+|-=
T Consensus 6 L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~ 56 (85)
T 3viq_B 6 LESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDI 56 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHH
Confidence 3344555555555556666565554432 245555555578877743
No 157
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=78.13 E-value=21 Score=27.28 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=22.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.|+...+-.|..++.+++|-..+++.|.+-+.+|+.+++.+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555566666665544
No 158
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.92 E-value=27 Score=28.46 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
+++.++..+|..|.+++++...|++.||+++++|+-..
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 34555555555555555555566666666655555443
No 159
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=77.87 E-value=6.8 Score=29.49 Aligned_cols=38 Identities=13% Similarity=0.315 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
.+..+-..|..|+.+...++.|.+.|++++.+|...++
T Consensus 41 iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 41 LLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556667777778888888999999888877664
No 160
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.69 E-value=6.8 Score=29.22 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
.+-..|..|+.+...++.+.+.|++++.+|...+.
T Consensus 44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666677777777888887777766654
No 161
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.50 E-value=7.4 Score=37.72 Aligned_cols=54 Identities=13% Similarity=0.221 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.++.++..++.+..+++.+.+.++.++.++.++|.+...+.++|.+....||-.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 455555556666667777777777777777777777666666666666555544
No 162
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.31 E-value=7 Score=30.14 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+++.+.+.|+++|..|.....+=..++..|.+++.++-.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 3455555666666666655555555556666665555443
No 163
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.29 E-value=17 Score=27.71 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.|..+++.|+.|+..||..+++++..+++-.+ +..++|..|-.+
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~---rQrd~Y~dLD~R 67 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE---RQKQILLQIDSL 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 35556667777777777777777666654322 223466666544
No 164
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.23 E-value=1.1 Score=34.53 Aligned_cols=43 Identities=19% Similarity=0.505 Sum_probs=30.9
Q ss_pred CccccCcccccC-CcEEe--cCCccccHHHHHhhhc-----CCCCCCCCcc
Q 022126 1 MRCNACWRELEG-RAIST--TCGHLLCTEDANKILS-----NDAACPICDQ 43 (302)
Q Consensus 1 l~CNiC~~~l~~-~~vvT--~CGHiFC~~Ci~~~~~-----~~~~CPvC~~ 43 (302)
|.|+.|.+.|.+ .+|-- .=+|-||..|.....+ ....||.-.+
T Consensus 16 l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~k 66 (93)
T 2cs3_A 16 LCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEK 66 (93)
T ss_dssp CCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSC
T ss_pred eEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCc
Confidence 579999999975 34321 2389999999887764 3667887655
No 165
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.17 E-value=21 Score=43.22 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
++.++++++..+.+..++++++.+...++.+|++-|+...
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666666665543
No 166
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=77.11 E-value=1.4 Score=42.41 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=34.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHH--Hhhh--cCCCCCCCCccccccCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDA--NKIL--SNDAACPICDQVLSKSLMKP 52 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci--~~~~--~~~~~CPvC~~~l~~~div~ 52 (302)
|.|++-...+..-+=...|.|+-|.+-. .... .....||+|++.+.-.++..
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 5799888777643336679999665432 2221 24779999999987665543
No 167
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=76.84 E-value=21 Score=26.78 Aligned_cols=24 Identities=8% Similarity=0.226 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKk 146 (302)
..++..++.++..++.++..+|.+
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e 48 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEE 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555544
No 168
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=76.21 E-value=4.5 Score=37.79 Aligned_cols=28 Identities=7% Similarity=0.338 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
+++.+..+.+.++.|++.|+++.+.+.+
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444444444444444444444444443
No 169
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=76.16 E-value=10 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+..|+.+.+.|..+|.+|...+.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655543
No 170
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=75.80 E-value=7 Score=33.89 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKs 158 (302)
|..+++.+|.+..-+.+.+.++-
T Consensus 104 l~kdlEelr~kL~P~~eEL~~~l 126 (191)
T 1nfn_A 104 LGADMEDVCGRLVQYRGEVQAML 126 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44455555555554444444433
No 171
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.74 E-value=22 Score=26.46 Aligned_cols=47 Identities=15% Similarity=0.223 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
++..+..++..+++-+.+.+.++.+. +...+.=.-|+..|.++-+.|
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~El---k~~~e~Ld~KI~eL~elrq~L 65 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNL---KTLLEILDGKIFELTELRDNL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHH
Confidence 33333334444444444444444433 333333344455555444443
No 172
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=75.64 E-value=0.71 Score=44.53 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=24.9
Q ss_pred ccccCcccccC-CcE------EecCCccccHHHHHhhhc
Q 022126 2 RCNACWRELEG-RAI------STTCGHLLCTEDANKILS 33 (302)
Q Consensus 2 ~CNiC~~~l~~-~~v------vT~CGHiFC~~Ci~~~~~ 33 (302)
.|.||...+.+ ..+ -.+|||.|-..|+.+|+.
T Consensus 310 ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLr 348 (381)
T 3k1l_B 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK 348 (381)
T ss_dssp SCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred cCcccceeecCCCCCccccccCCccCCccchHHHHHHHH
Confidence 59999987753 111 248999999999999974
No 173
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.63 E-value=1.9 Score=32.25 Aligned_cols=35 Identities=20% Similarity=0.564 Sum_probs=16.6
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
|..|.+.+.+ .++..-|..|-..|. .|-.|++.|.
T Consensus 28 C~~C~~~I~~-~~v~a~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 28 CAHCNQVIRG-PFLVALGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp BSSSCCBCCS-CEEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CccCCCEecc-eEEEECCccccccCC--------ccCCCCCCCC
Confidence 5555555532 234444544444443 4455555554
No 174
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.52 E-value=19 Score=25.67 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 120 EQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 120 ~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
.+++...+.|..+..+|+.+++.|++++.-|...+.|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444445555566666666666666555543
No 175
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=75.49 E-value=27 Score=29.14 Aligned_cols=22 Identities=9% Similarity=0.397 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESL 143 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~L 143 (302)
++++++.+.+++..|..+++.|
T Consensus 64 Lhaev~~v~~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 64 LQSVLDEINKELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444444445555444444
No 176
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=75.43 E-value=0.16 Score=38.59 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=30.6
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhh--------cCCCCCCCCcccccc
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKIL--------SNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~--------~~~~~CPvC~~~l~~ 47 (302)
.|.+|...|+ .+--=-.||++||..|..... ...+.|-.|-..+..
T Consensus 23 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 23 ACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRS 79 (84)
T ss_dssp BCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHT
T ss_pred CCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhh
Confidence 5888998875 123345699999999976542 124567777665544
No 177
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=75.31 E-value=32 Score=30.39 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH
Q 022126 151 QEKFSEKSRQKRKLD-EMYDQLRSE 174 (302)
Q Consensus 151 q~ky~EKsRq~~qLq-elYdkLK~~ 174 (302)
...+.||..|++.++ .|-+..+..
T Consensus 181 ~~lLNeKK~KIR~lq~~Ll~~~~~~ 205 (213)
T 1ik9_A 181 ILVLNEKKTKIRSLHNKLLNAAQER 205 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 344688888888888 666555543
No 178
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.26 E-value=7.7 Score=28.73 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
++..+..+......+..|.+.|+..+..|+..+.
T Consensus 34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344455555666666555554443
No 179
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.02 E-value=9.1 Score=36.85 Aligned_cols=57 Identities=11% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
++++.++.++..++.+.+.+++++++++..+++-..++.+-+.+-.+|-.++..++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456667777788888888888888888888877777777777666666666555543
No 180
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=74.95 E-value=18 Score=36.17 Aligned_cols=40 Identities=15% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.+..+.++.+..+.++++.-...+.+.+|+.+|..++.+
T Consensus 322 ~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~ 361 (551)
T 2b5u_A 322 NYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAA 361 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 3333333333333334433334557888888888887644
No 181
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=74.83 E-value=1.9 Score=30.08 Aligned_cols=40 Identities=25% Similarity=0.541 Sum_probs=27.5
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
.|..|.+.+.+ -++..-|..|-..| +.|-.|+++|.....
T Consensus 7 ~C~~C~~~I~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~~ 46 (66)
T 1nyp_A 7 ICGACRRPIEG-RVVNAMGKQWHVEH--------FVCAKCEKPFLGHRH 46 (66)
T ss_dssp EETTTTEECCS-CEECCTTSBEETTT--------CBCTTTCCBCSSSCC
T ss_pred CCcccCCEecc-eEEEECccccccCc--------CEECCCCCCCCCCce
Confidence 57888888874 45666676665555 578888888865443
No 182
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.56 E-value=2.7 Score=29.53 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=20.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.+.+. +++.-|..|-..|. .|-.|++.|..
T Consensus 7 ~C~~C~~~I~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 7 GCVKCNKAITSG-GITYQDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCSSSCCCCCTT-CEEETTEEECTTTT--------BCTTTCCBCTT
T ss_pred CCcccCCEeCcc-eEEECccccccCcC--------EECCCCCCCCC
Confidence 466666666543 34555655555553 46666666653
No 183
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=74.38 E-value=27 Score=26.79 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=29.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 81 SVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 81 Ai~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
.-+|-.-...+|-.|.. ..-++++..|.+++ ..+++.-+..|..++.+++..++++.+|..
T Consensus 19 ggaFgKrEaA~Ee~Yfr----qkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 19 GGAFGKREQAEEERYFR----ARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHhHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455556666665542 12233322333322 222333334455666666777777666654
No 184
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=73.93 E-value=27 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
+-+|...++.|+.++.+|....++-..++.+|++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554444443
No 185
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=73.61 E-value=9.8 Score=28.61 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=15.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.+.+++|.+...+-.+++.+|+.....|..++
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555554444555443
No 186
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=73.60 E-value=12 Score=25.93 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSK 145 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrK 145 (302)
++++.++..+..++...+.
T Consensus 29 ~~~k~~~~~~~~~l~~~~~ 47 (60)
T 3htk_A 29 LKAKEKINEIFEKLNTIRD 47 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 187
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.42 E-value=2.4 Score=29.80 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=18.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.+.+. .++.-|..|-..|. .|-.|+++|..
T Consensus 7 ~C~~C~~~I~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8z_A 7 GCVQCKKPITTG-GVTYREQPWHKECF--------VCTACRKQLSG 43 (70)
T ss_dssp BCSSSCCBCCSS-EEESSSSEEETTTS--------BCSSSCCBCTT
T ss_pred CCcccCCeeccc-eEEECccccCCCCC--------ccCCCCCcCCc
Confidence 355666655432 34445555544442 45555555543
No 188
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=72.94 E-value=30 Score=26.64 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=8.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQK 161 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~ 161 (302)
+++.++.++.+|.+.+.+-.+++
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~ 94 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELEREL 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 189
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.90 E-value=2.7 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=20.3
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.+.. ..+++.-|..|-..|. .|-.|+++|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCcccC--------eECCCCCcCCC
Confidence 35666666642 2455555555555443 45556665544
No 190
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=72.76 E-value=31 Score=30.54 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
.+|+..+..++.|+..|+.+|.+|++..+ +.+-|-++++.|-
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~l~ 159 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Confidence 44555566667777777777777765543 2334444444443
No 191
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=71.87 E-value=48 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=8.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLq 165 (302)
..+.+|++.|.+...++++|+
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~ 125 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLK 125 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444333333333
No 192
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=71.74 E-value=23 Score=24.87 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq 151 (302)
+..+|..++..|+.++..|.
T Consensus 37 ~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 37 LNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 193
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=71.40 E-value=3 Score=29.43 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=21.3
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.+.. ..+++.-|..|-..|. .|-.|++.|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEEECcCeecccCC--------cccccCCccCCC
Confidence 46666666653 2455555655555543 455666666543
No 194
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=71.21 E-value=0.29 Score=40.03 Aligned_cols=43 Identities=14% Similarity=0.518 Sum_probs=27.9
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhhcCCCCCCCCccc
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKILSNDAACPICDQV 44 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~ 44 (302)
.|..|...|+ .+--=-.||.+||..|........+.|-.|-..
T Consensus 21 ~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred cccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 5888988775 123345699999999976654446667777554
No 195
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.79 E-value=17 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
+++...+.|......|..+++.|+.++..|...+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555555554444433
No 196
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.55 E-value=75 Score=30.75 Aligned_cols=33 Identities=6% Similarity=0.081 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 146 DKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 146 kn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
++.+|.........+++.|++.++.++.+++.+
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 333333344444555666666666665555543
No 197
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=70.50 E-value=26 Score=26.86 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+|...+..++.|+..|+++|++|++.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666543
No 198
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=70.46 E-value=2.1 Score=30.00 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=22.8
Q ss_pred ccccCcccccC-CcEEecCCcccc--HHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEG-RAISTTCGHLLC--TEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC--~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.+.. .-+++.-|..|- ..|. .|-.|+++|...
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF--------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECF--------LCSCCSKCLIGQ 45 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTS--------BCTTTCCBCTTS
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCE--------ECCCCCCcCCCC
Confidence 46777777752 245666665555 5553 566666666543
No 199
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.23 E-value=29 Score=26.30 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
++..+++-+.+.+.++.+ |+...+.=.-|+..|.++-+.|
T Consensus 32 le~~Le~s~~~q~~~~~E---lk~l~e~Ld~KI~eL~elRqgL 71 (79)
T 3cvf_A 32 MERSLEEARAERERARAE---VGRAAQLLDVSLFELSELREGL 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHH
Confidence 333333334344444443 3333333344445555444443
No 200
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.14 E-value=3.4 Score=29.92 Aligned_cols=40 Identities=18% Similarity=0.488 Sum_probs=25.4
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.. ..+++.=|..|-..| +.|-.|++.|....
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 57 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDC--------FTCSNCKQVIGTGS 57 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTT--------CCCSSSCCCCTTSC
T ss_pred cCccCCcccccCceEEEECcccccccc--------CchhhCCCccCCCc
Confidence 57777777752 345666666665555 47777877776543
No 201
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.49 E-value=35 Score=27.39 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
+-..+.|++.|+.++.||+..+.+-.
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~~~~ 38 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLDNTT 38 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777775443
No 202
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=69.48 E-value=43 Score=27.07 Aligned_cols=37 Identities=8% Similarity=0.221 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKF-SEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky-~EKsRq~~qLqelYdkL 171 (302)
+.++|.+.+++|...+-... .+-.++...++.+|+++
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV 102 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLV 102 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544332222 23344555666666665
No 203
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.09 E-value=19 Score=24.16 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSK 145 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrK 145 (302)
+++.....|..+++-+++|..-||+
T Consensus 14 ~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 14 DLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333344444445555544444
No 204
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=69.00 E-value=38 Score=27.63 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
+..|+.|+ +...+||+++.+|+.+-+.++++++..
T Consensus 94 i~~L~~E~---~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 94 IDMLQKKL---VEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555333 333345666666666666666666543
No 205
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.86 E-value=20 Score=27.07 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMA 130 (302)
Q Consensus 118 ki~e~~s~~~kl~ 130 (302)
+|..++.++..|.
T Consensus 30 ~Ie~LE~~i~~le 42 (89)
T 2lw1_A 30 LLEDLEAKLEALQ 42 (89)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 206
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=68.85 E-value=35 Score=28.61 Aligned_cols=24 Identities=21% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdk 170 (302)
.+||+++.+|+.+-+.++++++..
T Consensus 105 ~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 105 EDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666655555555544
No 207
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.74 E-value=38 Score=27.17 Aligned_cols=13 Identities=8% Similarity=0.291 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESL 143 (302)
Q Consensus 131 ~kl~~me~E~e~L 143 (302)
.++..++.++..+
T Consensus 82 ~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 82 NKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHH
Confidence 3333333333333
No 208
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=68.05 E-value=3.2 Score=30.83 Aligned_cols=39 Identities=21% Similarity=0.367 Sum_probs=26.4
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.+ .++..-|..|-..| +.|-.|++.|....
T Consensus 27 ~C~~C~~~I~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 27 LCDKCGSGIVG-AVVKARDKYRHPEC--------FVCADCNLNLKQKG 65 (89)
T ss_dssp BCTTTCCBCCS-CCEESSSCEECTTT--------CCCSSSCCCTTTSC
T ss_pred CcccCCCEecc-cEEEECCceECccC--------CEecCCCCCCCCCC
Confidence 57788887765 44666676665555 57888888876543
No 209
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.51 E-value=4.7 Score=29.00 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=16.8
Q ss_pred cccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 3 CNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 3 CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
|..|.+.+.+. +++.=|..|-..|. .|-.|+++|.
T Consensus 18 C~~C~~~I~~~-~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 18 CARCSKTLTQG-GVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp CTTTCCCCCSC-CEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCCCEecCc-EEEECCchhhhhhC--------CcccCCCcCC
Confidence 55555555432 34444544444442 3555555554
No 210
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=67.45 E-value=15 Score=23.98 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ 152 (302)
.+..-..|+..|+.+|.||++
T Consensus 15 ~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 15 EIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHh
Confidence 344445566677777777764
No 211
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=67.18 E-value=1.7 Score=33.39 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=29.8
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHhhh------cCCCCCCCCcccccc
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANKIL------SNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~~~------~~~~~CPvC~~~l~~ 47 (302)
.|.+|...|+ ..-.=..||++||..|..... ...+.|-.|-..|..
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~~ 76 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETISK 76 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHHHH
Confidence 5889998875 233345799999999977542 123456666555543
No 212
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=67.04 E-value=2.5 Score=29.54 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=26.6
Q ss_pred ccccCcccccC-CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.. ..+++.=|..|-..|. .|-.|++.|....
T Consensus 13 ~C~~C~~~i~~~e~~~~~~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (72)
T 3f6q_B 13 TCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPEGL 53 (72)
T ss_dssp BCTTTCCBCCTTCEEEEETTEEEETTTS--------SCTTTCCCCGGGC
T ss_pred cchhcCccccCCceEEEeCcCeeCcCCC--------cccCCCCCCCCCC
Confidence 58888888763 4456666766655554 5777888876543
No 213
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=66.75 E-value=56 Score=27.35 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 022126 99 RIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRC-QMMEQEIESLSKDKQELQEKFSEKSRQ 160 (302)
Q Consensus 99 ~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl-~~me~E~e~LrKkn~ELq~ky~EKsRq 160 (302)
.+++++.+|-+...+-+.+.+++.+.-+...+.++ ..|+...++-..-..+|.++|.||.+.
T Consensus 65 ~~lk~laekrehe~EvlqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek~kh 127 (143)
T 3ryc_E 65 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 127 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45667777777766666667766554444444444 467777777777778888888877653
No 214
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.58 E-value=49 Score=26.62 Aligned_cols=24 Identities=4% Similarity=0.134 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 104 CRQKCEAMQEKFTEKLEQVHTAYQ 127 (302)
Q Consensus 104 lreK~e~L~~~l~~ki~e~~s~~~ 127 (302)
++++...+.....+.+.+.+..++
T Consensus 49 LR~kl~~~~~~t~~l~k~ts~~lk 72 (130)
T 2dnx_A 49 LQENLQQLQHSTNQLAKETNELLK 72 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333333333333333333
No 215
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.56 E-value=45 Score=26.18 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKF-SE-------KSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky-~E-------KsRq~~qLqelYdkLK~~ 174 (302)
.+-...+.+...+..++++|...+ .| -.++...++.--++|+.+
T Consensus 40 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 40 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666677777777776443 33 234445555555555555
No 216
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.46 E-value=19 Score=26.60 Aligned_cols=14 Identities=14% Similarity=0.399 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHhH
Q 022126 134 QMMEQEIESLSKDK 147 (302)
Q Consensus 134 ~~me~E~e~LrKkn 147 (302)
..|..+++.|..++
T Consensus 53 ~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 53 DQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 217
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=66.21 E-value=52 Score=26.72 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=4.3
Q ss_pred hhHHHHHHH
Q 022126 88 QKELEMQYK 96 (302)
Q Consensus 88 Q~~qe~~yQ 96 (302)
...++..|+
T Consensus 11 l~~Leae~q 19 (119)
T 3etw_A 11 LQALDAEYQ 19 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455555
No 218
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=66.19 E-value=4.2 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.603 Sum_probs=27.9
Q ss_pred cccCcccccCC--cEEecCCccccHHHHHhhhcCCCCCCCCc
Q 022126 3 CNACWRELEGR--AISTTCGHLLCTEDANKILSNDAACPICD 42 (302)
Q Consensus 3 CNiC~~~l~~~--~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~ 42 (302)
|-.|...+.+. ..-..|+++||.+|=.=.-+.-..||-|.
T Consensus 18 C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 18 CYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp ETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred ccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 77788887532 22577999999999544333456899884
No 219
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=66.13 E-value=19 Score=27.37 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
..|+.|+.+...+..+.+.|+++++.|...+.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666655543
No 220
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=65.99 E-value=56 Score=32.38 Aligned_cols=38 Identities=11% Similarity=0.166 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
-.+.|++++..|+++..+.-..++-|+...+.++.++.
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQ 149 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMK 149 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888777777778877777776643
No 221
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.92 E-value=20 Score=24.13 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhH
Q 022126 133 CQMMEQEIESLSKDK 147 (302)
Q Consensus 133 l~~me~E~e~LrKkn 147 (302)
+.++++|.+.|+|+|
T Consensus 12 vaslenenetlkkkn 26 (49)
T 3he5_A 12 VASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHhhcccHHHHHhc
Confidence 344444444444443
No 222
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=65.72 E-value=2.8 Score=30.04 Aligned_cols=40 Identities=18% Similarity=0.383 Sum_probs=26.6
Q ss_pred ccccCcccccC----CcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEG----RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~----~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
+|..|.+.+.+ ..+++.=|..|-..|. .|-.|++.|....
T Consensus 17 ~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 60 (77)
T 2egq_A 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCF--------HCKKCSVNLANKR 60 (77)
T ss_dssp CCSSSCCCCCCCSSCCCEEEETTEEEETTTC--------BCSSSCCBCTTSC
T ss_pred cCcccCCcccCCCCCceeEEECcceeCcccC--------EehhcCCCCCCCc
Confidence 47788888763 3556666766666654 5777888876543
No 223
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.46 E-value=2.3 Score=30.89 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=29.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLM 50 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~di 50 (302)
.|..|.+.+.+. ++..-|..|-..| +.|-.|++.|.....
T Consensus 17 ~C~~C~~~I~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~~~~ 56 (79)
T 1x62_A 17 MCDKCGTGIVGV-FVKLRDRHRHPEC--------YVCTDCGTNLKQKGH 56 (79)
T ss_dssp CCSSSCCCCCSS-CEECSSCEECTTT--------TSCSSSCCCHHHHCC
T ss_pred ccccCCCCccCc-EEEECcceeCcCc--------CeeCCCCCCCCCCCe
Confidence 588899888764 5777777776665 578889888865443
No 224
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.40 E-value=2.5 Score=30.42 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=24.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|..|.+.|.+ -+++.-|..|-..| +.|-.|+++|.
T Consensus 7 ~C~~C~~~I~~-~~v~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITG-RVLEAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSS-CCBCCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CcccCCCEecC-eeEEeCCCCCCCCc--------CEeCCCCCCCC
Confidence 57788887765 34566666665555 46777777776
No 225
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.12 E-value=37 Score=25.47 Aligned_cols=10 Identities=20% Similarity=0.405 Sum_probs=3.7
Q ss_pred HHHHHhHHHH
Q 022126 141 ESLSKDKQEL 150 (302)
Q Consensus 141 e~LrKkn~EL 150 (302)
+.|+++|..|
T Consensus 46 ~~L~~eN~~L 55 (78)
T 1gu4_A 46 LELTAENERL 55 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 226
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.08 E-value=75 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 131 KRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 131 ~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
+.+..++.++..+.+++.|+-+..+++.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 227
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=64.76 E-value=31 Score=24.91 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 123 HTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 123 ~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
++.+++|-+--..|..|+..+.+++++||
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQ 54 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 33334333333344444444444444444
No 228
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=64.69 E-value=63 Score=27.21 Aligned_cols=22 Identities=5% Similarity=0.264 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 110 AMQEKFTEKLEQVHTAYQKMAK 131 (302)
Q Consensus 110 ~L~~~l~~ki~e~~s~~~kl~~ 131 (302)
.+...+++.+.++++.++.+..
T Consensus 59 el~~~l~~~ld~l~~~~~~l~~ 80 (165)
T 1gs9_A 59 ELRALMDETMKELKAYKSELEE 80 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667666666543
No 229
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.60 E-value=2 Score=30.91 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=26.1
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.|.+ ..++..-|..|-..| +.|-.|++.|...
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSSS
T ss_pred CCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCCC
Confidence 57788887763 355666776666555 4777788777643
No 230
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.22 E-value=0.78 Score=36.46 Aligned_cols=39 Identities=31% Similarity=0.615 Sum_probs=27.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|+.|..+|. + .=|+.+|..|-.. +.....||-|+.+|.
T Consensus 34 ~CP~Cq~eL~---~--~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 34 HCPQCQHVLD---Q--DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp BCSSSCSBEE---E--ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cCccCCCcce---e--cCCEEECccccch-hhccccCcchhhHHH
Confidence 6999998884 1 2255568888554 344668999999885
No 231
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.08 E-value=48 Score=25.59 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.+..+|..+......+..+-+..-++...++..+-+-..+..-+..-|+--..+++++
T Consensus 36 ~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 36 VVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444445555555555554555555555554444444444
No 232
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=64.04 E-value=2.1 Score=31.39 Aligned_cols=29 Identities=21% Similarity=0.702 Sum_probs=20.8
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHh
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANK 30 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~ 30 (302)
.|.+|...|+ ..--=-.||++||..|...
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4888988875 1223356999999999754
No 233
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=63.84 E-value=1.9 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.680 Sum_probs=21.9
Q ss_pred ccccCcccccC---CcEEecCCccccHHHHHhh
Q 022126 2 RCNACWRELEG---RAISTTCGHLLCTEDANKI 31 (302)
Q Consensus 2 ~CNiC~~~l~~---~~vvT~CGHiFC~~Ci~~~ 31 (302)
.|.+|...|+- .--=-.||++||..|....
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 58889988751 2234569999999997654
No 234
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=63.38 E-value=48 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 118 KLEQVHTAYQKMAKRC---------------QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 118 ki~e~~s~~~kl~~kl---------------~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
++.++..+.+++++|- ++++..+-..+.-+.|+...++|....-+|++.
T Consensus 29 ql~~A~e~~eKl~KKrsS~~gs~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qIE~ 92 (101)
T 3teq_A 29 QLMVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQIEI 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhchheeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556665553 233444444555555555555555554555543
No 235
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=62.97 E-value=60 Score=29.05 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 146 DKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 146 kn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
-..-|..+|.+-..+++++|..|..
T Consensus 139 ~~~~L~~~f~~~~~~Fq~~Q~~y~e 163 (279)
T 2xhe_B 139 QHSSLSRKFVKVMTRYNDVQAENKR 163 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888888888877743
No 236
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.89 E-value=0.79 Score=32.87 Aligned_cols=10 Identities=30% Similarity=0.853 Sum_probs=8.1
Q ss_pred ccccCccccc
Q 022126 2 RCNACWRELE 11 (302)
Q Consensus 2 ~CNiC~~~l~ 11 (302)
.|+.|...+.
T Consensus 8 ~CP~C~~~Ie 17 (60)
T 1wd2_A 8 ECPKCHVTIE 17 (60)
T ss_dssp CCTTTCCCCS
T ss_pred ECcCCCCeeE
Confidence 5899998875
No 237
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=62.79 E-value=49 Score=25.29 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+|+..+...+.|+..|+.+|.+|++.
T Consensus 42 ~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 42 KLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777778887777543
No 238
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=62.63 E-value=4.4 Score=28.89 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=27.8
Q ss_pred CCCCCCccccccCCCcccccCCChHHHHHHhcCCChHHHHHH
Q 022126 36 AACPICDQVLSKSLMKPVDINPNDEWVNMAMAGVSPQILMKS 77 (302)
Q Consensus 36 ~~CPvC~~~l~~~div~~~LnPse~~Kt~vL~GlsP~~Ime~ 77 (302)
..|..|++.+.. ..|.|+..+..|.+|..+++.
T Consensus 4 VRCFTCGkvi~~---------~we~y~~~~~~~~~~~~~LD~ 36 (55)
T 1ef4_A 4 VRCLSCGKPVSA---------YFNEYQRRVADGEDPKDVLDD 36 (55)
T ss_dssp SSCSCTTSCCHH---------HHHHHHHHHHHTCCHHHHHHH
T ss_pred eecCCCCCChhH---------HHHHHHHHHHcCCCHHHHHHH
Confidence 479999997753 578899999999999999863
No 239
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=62.53 E-value=2.8 Score=31.64 Aligned_cols=26 Identities=27% Similarity=0.733 Sum_probs=19.9
Q ss_pred ccccCcccccCCcEEecCCccccHHH
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~C 27 (302)
+|..|++.+.-..+.-.||.+||...
T Consensus 27 RC~~CrKkvgL~gf~CrCg~~FCs~H 52 (74)
T 1wfl_A 27 RCFMCRKKVGLTGFDCRCGNLFCGLH 52 (74)
T ss_dssp BCSSSCCBCGGGCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeecCCCCEechhc
Confidence 69999987543357778999999754
No 240
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.50 E-value=50 Score=25.30 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=12.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
.++.+.|....+.-..++..++.-++.|+.+
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444444444
No 241
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=62.36 E-value=0.55 Score=36.04 Aligned_cols=39 Identities=28% Similarity=0.578 Sum_probs=20.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVL 45 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l 45 (302)
..|+.|..+|..+. ++.+|..|-..+-... .||-|+.+|
T Consensus 3 ~~CP~C~~~l~~~~-----~~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 3 ITCPVCHHALERNG-----DTAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp CCCSSSCSCCEECS-----SEEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred CCCCCCCCccccCC-----CceECccccccCCCcc-cCcchhhHH
Confidence 36889998874211 1334555644332222 566666655
No 242
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=62.23 E-value=1.6 Score=28.60 Aligned_cols=29 Identities=7% Similarity=0.229 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
++.+++|++.|+.+.|.+..+...|++++
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777666666666554
No 243
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=62.16 E-value=46 Score=25.75 Aligned_cols=74 Identities=11% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQE----KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 100 l~~~lreK~e~L~~----~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
+...++.++..+.. .=+..+.+++..++.+..-|..|+-|...+- -.....|..|-|.|++ -+++||+++
T Consensus 17 l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p---~~~R~~~~~klr~Yk~---dL~~lk~el 90 (102)
T 1vcs_A 17 LTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIP---PQSRGMYSNRMRSYKQ---EMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---TTTHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44455555554431 1234566677777776666777776666542 1223345555554422 234566665
Q ss_pred HHHH
Q 022126 176 ESMK 179 (302)
Q Consensus 176 e~~~ 179 (302)
.+++
T Consensus 91 k~~~ 94 (102)
T 1vcs_A 91 KRSR 94 (102)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 244
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.94 E-value=32 Score=25.88 Aligned_cols=7 Identities=0% Similarity=0.131 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 022126 123 HTAYQKM 129 (302)
Q Consensus 123 ~s~~~kl 129 (302)
...|.+|
T Consensus 28 e~~Ie~L 34 (89)
T 2lw1_A 28 PQLLEDL 34 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 245
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=61.59 E-value=3.6 Score=30.19 Aligned_cols=26 Identities=23% Similarity=0.707 Sum_probs=20.3
Q ss_pred ccccCcccccCCcEEecCCccccHHH
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~C 27 (302)
+|..|++.+.-..+.-.||.+||...
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wfh_A 17 RCTVCRKRVGLTGFMCRCGTTFCGSH 42 (64)
T ss_dssp CCTTTCCCCCTTCEECSSSCEECTTT
T ss_pred cChhhCCccCccCEEeecCCEecccc
Confidence 68999987643357778999999865
No 246
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.43 E-value=2.2 Score=32.11 Aligned_cols=29 Identities=21% Similarity=0.613 Sum_probs=21.1
Q ss_pred ccccCccccc---CCcEEecCCccccHHHHHh
Q 022126 2 RCNACWRELE---GRAISTTCGHLLCTEDANK 30 (302)
Q Consensus 2 ~CNiC~~~l~---~~~vvT~CGHiFC~~Ci~~ 30 (302)
.|..|...|+ .+--=-.||+|||..|...
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 5888998874 1222356999999999654
No 247
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=61.31 E-value=20 Score=22.12 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKSRQK-RKLDEMYDQL 171 (302)
Q Consensus 144 rKkn~ELq~ky~EKsRq~-~qLqelYdkL 171 (302)
++.......+..||-++. +++|+|.-+|
T Consensus 3 rkrlrkfrnkikeklkkigqkiqgllpkl 31 (32)
T 1lyp_A 3 RKRLRKFRNKIKEKLKKIGQKIQGLLPKL 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344444455555665555 6677766554
No 248
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=61.21 E-value=3.1 Score=30.26 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=23.4
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+....+++.-|..|-..| +.|-.|+++|....
T Consensus 9 ~C~~C~~~I~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 48 (81)
T 1a7i_A 9 KCGACGRTVYHAEEVQCDGRSFHRCC--------FLCMVCRKNLDSTT 48 (81)
T ss_dssp BCSSSCCBCSSTTEEEETTEEEESSS--------EECSSSCCEECSSC
T ss_pred cCcCcCccccCceeEEeCCccccccc--------CccCCCCCCCCCCC
Confidence 46777777643335566665554444 35677777765543
No 249
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=61.10 E-value=11 Score=26.44 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ 152 (302)
+..+..|++.|+.++.+|++
T Consensus 36 ~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 36 YEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555555443
No 250
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=61.01 E-value=35 Score=25.84 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky 154 (302)
++...+.|+..|+.+|.+|++..
T Consensus 42 ~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 42 EIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554433
No 251
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=60.63 E-value=4 Score=30.74 Aligned_cols=26 Identities=23% Similarity=0.690 Sum_probs=20.6
Q ss_pred ccccCcccccCCcEEecCCccccHHH
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~C 27 (302)
+|..|++.+.-..+.-.||.+||...
T Consensus 27 RC~~C~kkvgL~~f~CrCg~~FCs~H 52 (74)
T 1wfp_A 27 RCLSCNKKVGVTGFKCRCGSTFCGTH 52 (74)
T ss_dssp BCSSSCCBCTTTCEECTTSCEECTTT
T ss_pred cchhhcCcccccceEeccCCEecccc
Confidence 68899987653467779999999865
No 252
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=60.59 E-value=35 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhHH
Q 022126 135 MMEQEIESLSKDKQ 148 (302)
Q Consensus 135 ~me~E~e~LrKkn~ 148 (302)
-++.|..+|||+++
T Consensus 35 ylekeianlrkkie 48 (49)
T 3he5_A 35 YLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 34555555555543
No 253
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.44 E-value=31 Score=26.52 Aligned_cols=11 Identities=18% Similarity=0.018 Sum_probs=5.3
Q ss_pred hhhhhhhhHHH
Q 022126 82 VMFYLGQKELE 92 (302)
Q Consensus 82 i~Fw~~Q~~qe 92 (302)
..|...|..+.
T Consensus 13 ~~~~~l~~~~~ 23 (117)
T 2zqm_A 13 GQLESYQQQLQ 23 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555543
No 254
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=60.26 E-value=26 Score=26.50 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 022126 128 KMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKk 146 (302)
.++.++..++.++..+|.+
T Consensus 32 ~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 255
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=60.19 E-value=50 Score=24.52 Aligned_cols=13 Identities=0% Similarity=0.151 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 022126 125 AYQKMAKRCQMME 137 (302)
Q Consensus 125 ~~~kl~~kl~~me 137 (302)
+++.+..++..++
T Consensus 12 E~eel~~klk~~~ 24 (71)
T 1uix_A 12 EKEELNNKLKEAQ 24 (71)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 256
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=60.03 E-value=58 Score=25.25 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 148 QELQEKFSEKSRQKRKLDEMYD 169 (302)
Q Consensus 148 ~ELq~ky~EKsRq~~qLqelYd 169 (302)
.-|..+|.|--.+|+.+|.-|.
T Consensus 98 ~~L~~kf~e~m~~y~~~q~~yr 119 (127)
T 1ez3_A 98 STLSRKFVEVMSEYNATQSDYR 119 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555665554
No 257
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.93 E-value=3.7 Score=29.40 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=26.3
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+....+++.-|..|-..|. .|..|++.|....
T Consensus 11 ~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~~~ 50 (76)
T 2cu8_A 11 KCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLTPGG 50 (76)
T ss_dssp BCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCCTTS
T ss_pred CCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccCCCc
Confidence 577788877633456666766666663 5777877776543
No 258
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=59.89 E-value=4.1 Score=31.43 Aligned_cols=26 Identities=19% Similarity=0.579 Sum_probs=21.2
Q ss_pred ccccCcccccC-CcEEecCCccccHHH
Q 022126 2 RCNACWRELEG-RAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~-~~vvT~CGHiFC~~C 27 (302)
+|..|++.+.- .++.-.||.+||...
T Consensus 27 rC~~C~kkvgl~~~f~CrCg~~FC~~H 53 (85)
T 1wff_A 27 HCFLCGKKTGLATSFECRCGNNFCASH 53 (85)
T ss_dssp BCSSSCCBCSSSSCEECTTCCEECTTT
T ss_pred cchhhCCeecccCCeEcCCCCEecccC
Confidence 68999997753 378889999999865
No 259
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=59.80 E-value=75 Score=26.45 Aligned_cols=30 Identities=13% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYD-QLRSEYE 176 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYd-kLK~~~e 176 (302)
..-|..+|.+-..+++++|..|. ++|.+.+
T Consensus 86 ~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~ 116 (196)
T 1fio_A 86 AENSRQRFLKLIQDYRIVDSNYKEENKEQAK 116 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777788888888874 3565533
No 260
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=59.70 E-value=18 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
++++...+++++++++.|+++..|.
T Consensus 157 i~ql~~En~~le~~Ie~Lk~e~~e~ 181 (250)
T 2ve7_C 157 MQQLNAAHQEALMKLERLEKEVDED 181 (250)
T ss_dssp HHHHHHHHHHHHHSCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333344444444444443333
No 261
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=59.69 E-value=4 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.677 Sum_probs=20.1
Q ss_pred ccccCcccccCCcEEecCCccccHHH
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~C 27 (302)
+|..|++.+.-..+.-.||.+||...
T Consensus 17 rC~~C~kkvgl~~f~CrCg~~FC~~H 42 (64)
T 1wg2_A 17 RCFSCNKKVGVMGFKCKCGSTFCGSH 42 (64)
T ss_dssp SCTTTCCCCTTSCEECTTSCEECSSS
T ss_pred cChhhCCcccccCeEeecCCEecccC
Confidence 68999987643356779999999754
No 262
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.56 E-value=31 Score=32.46 Aligned_cols=11 Identities=18% Similarity=0.468 Sum_probs=6.1
Q ss_pred CCcCccccCCC
Q 022126 226 DIWPARQNSSN 236 (302)
Q Consensus 226 ~~~~~~~~~~~ 236 (302)
-||...||...
T Consensus 111 gGWtviQrR~d 121 (323)
T 1lwu_C 111 NGWTVIQHRHD 121 (323)
T ss_dssp CEEEEEEEESS
T ss_pred CceEEEEEccC
Confidence 36666665543
No 263
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=59.40 E-value=44 Score=23.66 Aligned_cols=39 Identities=15% Similarity=0.517 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
+-++..|...|++++.-|++.++|.-|--..|+.+..++
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667777776666666676665554
No 264
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.32 E-value=6.1 Score=29.36 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=23.8
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+...-+++.-|..|-..| +.|-.|++.|...+
T Consensus 17 ~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 17 TCVECQKTVYPMERLLANQQVFHISC--------FRCSYCNNKLSLGT 56 (91)
T ss_dssp BCTTTCCBCCTTSEEECSSSEEETTT--------CBCTTTCCBCCTTT
T ss_pred cCccCCCccCCceeEEECCCEECCCC--------CeeCCCCCCCCCCC
Confidence 46677777654334566666555554 46667777665543
No 265
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=59.26 E-value=43 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQM 135 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~ 135 (302)
.+.+.+++-.+++.+|......
T Consensus 21 hLrrEL~dNS~~lskLE~ets~ 42 (54)
T 1deb_A 21 NLRQELEDNSNHLTKLETEASN 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhhhhh
Confidence 3334444444444444333333
No 266
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=59.20 E-value=4.3 Score=36.94 Aligned_cols=15 Identities=0% Similarity=-0.059 Sum_probs=0.0
Q ss_pred CCCCCCCccccccCC
Q 022126 35 DAACPICDQVLSKSL 49 (302)
Q Consensus 35 ~~~CPvC~~~l~~~d 49 (302)
...||.=++.+.-.+
T Consensus 57 EGe~py~~s~~~i~~ 71 (246)
T 1z56_A 57 EGTGIFSKSSFGIND 71 (246)
T ss_dssp ---------------
T ss_pred CCcCcccccccchhh
Confidence 346776666444433
No 267
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=59.13 E-value=42 Score=23.62 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=4.4
Q ss_pred HHHHHHHhHHHH
Q 022126 139 EIESLSKDKQEL 150 (302)
Q Consensus 139 E~e~LrKkn~EL 150 (302)
+.+.|..+|.+|
T Consensus 30 ~v~~L~~~n~~L 41 (62)
T 1jnm_A 30 KVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 268
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=59.03 E-value=59 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=6.2
Q ss_pred HHHHHHHHHhHHHH
Q 022126 137 EQEIESLSKDKQEL 150 (302)
Q Consensus 137 e~E~e~LrKkn~EL 150 (302)
+.+++.||+.+.++
T Consensus 55 e~~i~~Lr~~i~~~ 68 (93)
T 3s4r_A 55 EEEMRELRRQVDQL 68 (93)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 269
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.94 E-value=4 Score=29.08 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=24.5
Q ss_pred ccccCccccc-CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELE-GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+. ...+++.-|..|-..|. .|-.|++.|....
T Consensus 13 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 13 TCERCKGGFAPAEKIVNSNGELYHEQCF--------VCAQCFQQFPEGL 53 (77)
T ss_dssp BCSSSCCBCCSTTTCEEETTEEECTTTC--------CCTTTCCCCGGGC
T ss_pred CchhcCCccCCCceEEEeCccEeccccC--------eECCCCCCCCCCC
Confidence 4777777775 24556666666555553 4667777776543
No 270
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.91 E-value=5.6 Score=28.95 Aligned_cols=9 Identities=22% Similarity=0.914 Sum_probs=4.6
Q ss_pred cccCccccc
Q 022126 3 CNACWRELE 11 (302)
Q Consensus 3 CNiC~~~l~ 11 (302)
|..|.+.|.
T Consensus 18 C~~C~~~I~ 26 (79)
T 2cor_A 18 CQKCHAIID 26 (79)
T ss_dssp CTTTCCBCC
T ss_pred CccCCCEec
Confidence 455555554
No 271
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=58.89 E-value=39 Score=26.83 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIE 141 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e 141 (302)
+++++..++..++++...+..+....+
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333333
No 272
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=58.67 E-value=27 Score=25.89 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
++.+++|++.|+.|.++.....+.|.+
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555543
No 273
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.62 E-value=28 Score=27.53 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIES--LSKD------------KQELQEKFSEKSRQKRKLDEMYDQLRSEY 175 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~--LrKk------------n~ELq~ky~EKsRq~~qLqelYdkLK~~~ 175 (302)
.++++|.+++.+-++|..++..++.+++. |+.+ ++=....|........+|+.-..+||.++
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777666654 2222 12234556666677788888888888874
No 274
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.58 E-value=7.3 Score=27.95 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=19.7
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.+.+ -+++.-|..|-..|. .|-.|+++|...
T Consensus 17 ~C~~C~~~I~~-~~v~a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 17 KCGGCNRPVLE-NYLSAMDTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp BCTTTCCBCCS-SCEEETTEEECTTTC--------BCSSSCCBSCSS
T ss_pred ccccCCCeecc-eeEEECCCeEecCcC--------ChhhCCCCCCCC
Confidence 35566666654 234445555544442 455666666543
No 275
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=57.79 E-value=58 Score=24.55 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=8.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKs 158 (302)
...+.+..++..|.+++.+..
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~ 92 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVM 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 276
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=57.74 E-value=83 Score=26.29 Aligned_cols=7 Identities=0% Similarity=0.230 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 022126 159 RQKRKLD 165 (302)
Q Consensus 159 Rq~~qLq 165 (302)
++..++.
T Consensus 128 ~Kl~rv~ 134 (152)
T 4fla_A 128 QKLARVT 134 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334444
No 277
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.67 E-value=14 Score=26.23 Aligned_cols=13 Identities=8% Similarity=0.146 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhHH
Q 022126 136 MEQEIESLSKDKQ 148 (302)
Q Consensus 136 me~E~e~LrKkn~ 148 (302)
|..++..|+.++.
T Consensus 41 L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 41 LASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 278
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=57.64 E-value=64 Score=24.96 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQ-----EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQK 161 (302)
Q Consensus 100 l~~~lreK~e~L~-----~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~ 161 (302)
+...++.++..+. +.=+..+.+++..++.+..-|..|+-|..++- ......|..|-|.|
T Consensus 27 l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p---~s~R~~~~~klr~Y 90 (102)
T 2qyw_A 27 LLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP---LTFRNPMMSKLRNY 90 (102)
T ss_dssp HHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHH
Confidence 5556666666552 33345677777777777777777777766652 23344555555555
No 279
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=57.45 E-value=14 Score=26.59 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhHHHH
Q 022126 135 MMEQEIESLSKDKQEL 150 (302)
Q Consensus 135 ~me~E~e~LrKkn~EL 150 (302)
+|+.+.+.|+.+|.+|
T Consensus 34 ~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 280
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=57.37 E-value=50 Score=33.40 Aligned_cols=23 Identities=9% Similarity=0.154 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EK 157 (302)
.++++.+.|+.+..+++...+++
T Consensus 498 ~~~~~~~~l~~~~~~~~~~~~~~ 520 (592)
T 1f5n_A 498 SAQASAKMLHEMQRKNEQMMEQK 520 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 281
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=57.34 E-value=0.84 Score=36.75 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=11.2
Q ss_pred HHHHhcCCChHHHHH
Q 022126 62 VNMAMAGVSPQILMK 76 (302)
Q Consensus 62 Kt~vL~GlsP~~Ime 76 (302)
.+..|.|++++.+.+
T Consensus 21 lN~~L~~Ls~~e~~~ 35 (107)
T 3a5t_A 21 LNQHLRGLSKEEIIQ 35 (107)
T ss_dssp HHHTTTTCCHHHHHH
T ss_pred HHHHHhCCCHHHHHH
Confidence 445678999998873
No 282
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.06 E-value=18 Score=33.05 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
++.+++.+++.|..+|+-|.+.+++-.+|+.+|+
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lk 88 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALR 88 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777766666554444
No 283
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=56.80 E-value=64 Score=24.70 Aligned_cols=44 Identities=11% Similarity=0.177 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQ----EKFTEKLEQVHTAYQKMAKRCQMMEQEIESL 143 (302)
Q Consensus 100 l~~~lreK~e~L~----~~l~~ki~e~~s~~~kl~~kl~~me~E~e~L 143 (302)
+...++.++..+. +.=+..+.+++..++.+..-|..|+-|..++
T Consensus 13 ~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 13 TLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555666655543 2233456667777777766677777776666
No 284
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.77 E-value=10 Score=29.46 Aligned_cols=35 Identities=23% Similarity=0.455 Sum_probs=25.8
Q ss_pred CccccCcccccC--CcEEecCCccccHHHHHhhhcCC
Q 022126 1 MRCNACWRELEG--RAISTTCGHLLCTEDANKILSND 35 (302)
Q Consensus 1 l~CNiC~~~l~~--~~vvT~CGHiFC~~Ci~~~~~~~ 35 (302)
|.|..|.+.|.. ..+...=|.+||..|..+.+...
T Consensus 31 F~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~ 67 (114)
T 1j2o_A 31 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSG 67 (114)
T ss_dssp CCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSC
T ss_pred CcccccCCchhcCCCeeEEECCeeechHHHHHHhCcc
Confidence 678888888853 35556668899999988876543
No 285
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.61 E-value=18 Score=27.29 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 022126 133 CQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 133 l~~me~E~e~LrKkn~EL 150 (302)
+..|+.|...|+.++..|
T Consensus 45 ~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 286
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.48 E-value=9.5 Score=27.51 Aligned_cols=37 Identities=22% Similarity=0.499 Sum_probs=20.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.+.+. +++.-|..|-..|. .|..|++.|..
T Consensus 17 ~C~~C~~~I~~~-~~~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (81)
T 2dlo_A 17 KCATCSQPILDR-ILRAMGKAYHPGCF--------TCVVCHRGLDG 53 (81)
T ss_dssp BCTTTCCBCCSC-CEEETTEEECTTTC--------BCSSSCCBCTT
T ss_pred ccccCCCeecce-eEEECCccccHHhc--------CcccCCCccCC
Confidence 356666666532 45555555544443 45666666653
No 287
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=56.40 E-value=62 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~~e 176 (302)
.++...++...+.|+.+.+
T Consensus 52 ~~E~~~l~~ni~~lk~K~~ 70 (78)
T 3iv1_A 52 DQEVAEVDKNIELLKKKDE 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555554433
No 288
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=56.19 E-value=56 Score=29.27 Aligned_cols=41 Identities=7% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+++++..++..+++.+...++|.+.+++-|+...|+.+-|.
T Consensus 176 lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 176 VKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556666666666667777777777777777766664
No 289
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.11 E-value=60 Score=24.12 Aligned_cols=9 Identities=22% Similarity=0.379 Sum_probs=3.2
Q ss_pred HHHhHHHHH
Q 022126 143 LSKDKQELQ 151 (302)
Q Consensus 143 LrKkn~ELq 151 (302)
|+.++..|+
T Consensus 19 Le~~v~~le 27 (72)
T 3cve_A 19 LEGQLSEME 27 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 290
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=55.98 E-value=19 Score=33.50 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~k 153 (302)
++++++.+.+.|+.++++|.+.
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555433
No 291
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.86 E-value=24 Score=22.95 Aligned_cols=15 Identities=13% Similarity=0.266 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhH
Q 022126 133 CQMMEQEIESLSKDK 147 (302)
Q Consensus 133 l~~me~E~e~LrKkn 147 (302)
..++++|...|+..+
T Consensus 17 ~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 17 LWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 344444444444433
No 292
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.38 E-value=6.7 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.438 Sum_probs=25.6
Q ss_pred CccccCcccccCCcEEecCCccccH-HHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCT-EDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~-~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||. .|..+.+
T Consensus 37 F~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f 69 (76)
T 2cu8_A 37 LKCERCSKTLTPGGHAEHDGKPFCHKPCYATLF 69 (76)
T ss_dssp CBCSSSCCBCCTTSCEEETTEEECTTTHHHHHS
T ss_pred CCCCCCCCccCCCceEeECCEEecchHHHHHhc
Confidence 6788999999765566677999999 7987764
No 293
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.36 E-value=44 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
++++.-+.++.+.++++..+..|.++|+=|.+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 455555666666666666666666666665544
No 294
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=55.14 E-value=68 Score=24.52 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=20.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 141 ESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
...+....++++.-.||..=-.++.++.++--++++
T Consensus 65 ~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhirrLD 100 (104)
T 4afl_A 65 KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555666666666666666555543
No 295
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=55.00 E-value=79 Score=25.19 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+..-+.+...++.|+.||++.+.|.
T Consensus 77 l~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 77 LQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666555543
No 296
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=54.79 E-value=3.2 Score=35.59 Aligned_cols=21 Identities=10% Similarity=0.509 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 022126 162 RKLDEMYDQLRSEYESMKRSAIQP 185 (302)
Q Consensus 162 ~qLqelYdkLK~~~e~~~rsa~~~ 185 (302)
..+.+||+++|++ ++..|.+-
T Consensus 113 snv~nL~ekvk~~---Lr~nA~e~ 133 (176)
T 1jsd_B 113 ANVNNLYNKVKRA---LGSNAMED 133 (176)
T ss_dssp HHHHHHHHHHHHH---HGGGEEEC
T ss_pred HHHHHHHHHHHHH---HHhhhHhh
Confidence 6788899999999 77766543
No 297
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.14 E-value=3.4 Score=33.10 Aligned_cols=29 Identities=21% Similarity=0.496 Sum_probs=19.2
Q ss_pred cEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 14 AISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 14 ~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+.=..||+.|+ .-+.....||.|+..-..
T Consensus 68 ~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 33456899982 223456899999986543
No 298
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=53.86 E-value=3 Score=35.87 Aligned_cols=20 Identities=15% Similarity=0.554 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 022126 162 RKLDEMYDQLRSEYESMKRSAIQ 184 (302)
Q Consensus 162 ~qLqelYdkLK~~~e~~~rsa~~ 184 (302)
..+.+||+++|++ +|..|..
T Consensus 113 snv~nLyekvr~q---Lr~NA~e 132 (174)
T 3ku3_B 113 SNVKNLYDKVRMQ---LRDNVKE 132 (174)
T ss_dssp HHHHHHHHHHHHH---HGGGEEE
T ss_pred HHHHHHHHHHHHH---Hhcchhh
Confidence 6778899999999 7766653
No 299
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=53.71 E-value=2.1 Score=40.09 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=31.1
Q ss_pred ccccCcccccCCcEEe----cCC--ccccHHHHHhhhcCCCCCCCCccc
Q 022126 2 RCNACWRELEGRAIST----TCG--HLLCTEDANKILSNDAACPICDQV 44 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT----~CG--HiFC~~Ci~~~~~~~~~CPvC~~~ 44 (302)
.|++|...-.- .++. .=| |.+|..|...|--....||.|+..
T Consensus 184 ~CPvCGs~P~~-s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 184 LCPACGSPPMA-GMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SCTTTCCCEEE-EEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCcCce-eEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 69999976532 3444 245 688999998886567899999986
No 300
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=53.45 E-value=88 Score=25.27 Aligned_cols=11 Identities=18% Similarity=0.555 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022126 116 TEKLEQVHTAY 126 (302)
Q Consensus 116 ~~ki~e~~s~~ 126 (302)
++.++++...|
T Consensus 67 e~E~ae~k~KY 77 (115)
T 3vem_A 67 ERKMAEVQAEF 77 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 301
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=53.36 E-value=6 Score=31.60 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=30.2
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|..|.+.+.+..++..-|..|-..| +.|-.|++.|.
T Consensus 63 ~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 63 RCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp BBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred cCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 58999999986667888887776666 58999999996
No 302
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.10 E-value=71 Score=24.10 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
|+++++.+...|+.++..|+..++
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344444444444444444443
No 303
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=52.38 E-value=2.5 Score=42.19 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC
Q 022126 162 RKLDEMYDQLRSEYESMKRSAIQ 184 (302)
Q Consensus 162 ~qLqelYdkLK~~~e~~~rsa~~ 184 (302)
..+.+||+++|++ +|..|..
T Consensus 447 snv~~L~ekvr~q---Lr~nA~e 466 (515)
T 4f23_A 447 ANVRNLHEQIKRA---LKDNAID 466 (515)
T ss_dssp HHHHHHHHHHHHH---HGGGEEE
T ss_pred HHHHHHHHHHHHH---Hhcchhh
Confidence 6788899999999 7766653
No 304
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=52.09 E-value=44 Score=32.25 Aligned_cols=53 Identities=9% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
-+.|...+.+++.+.+.+++++++++..+++...|+.+.+..-.+|-.++..+
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666666666666666666666666655555554444444443333
No 305
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.97 E-value=40 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
|..|+.++-.+...|+.++.-|++.+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 33344444444444444444444333
No 306
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.95 E-value=1.1e+02 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
+-..+...++++|..|.+.+.|+...+.-+|+-...||.
T Consensus 105 ~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 105 DARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666777777777777776655555544444443
No 307
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=51.24 E-value=75 Score=23.85 Aligned_cols=31 Identities=3% Similarity=0.205 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIE 141 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e 141 (302)
++..+...+.+++..+..+...+..+..+.+
T Consensus 22 ~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~ 52 (86)
T 1x8y_A 22 LEDSLARERDTSRRLLAEKEREMAEMRARMQ 52 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 308
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=51.15 E-value=8.2 Score=30.42 Aligned_cols=32 Identities=19% Similarity=0.503 Sum_probs=24.6
Q ss_pred CccccCcccc-cCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWREL-EGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l-~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.| .+..+...=|.+||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYLLINSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEEeeCCEEEcHHHhHHHh
Confidence 5788888888 3455666678999999988765
No 309
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=51.10 E-value=80 Score=24.13 Aligned_cols=25 Identities=0% Similarity=0.109 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
+..++..+.+.+.=+++|.-+..++
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3334444444444444444444444
No 310
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=50.96 E-value=1.2e+02 Score=29.93 Aligned_cols=48 Identities=10% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
..++.|.+.|++++.+|++.+....+...-+.+-+..++.+|..-||+
T Consensus 419 ~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~RrT 466 (470)
T 3ilw_A 419 QRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRT 466 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 356778888888888888888877776666666666777776544443
No 311
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.93 E-value=14 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=24.3
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
+|..|.+.+.+ .++..-|..|-..| +.|-.|++.|..
T Consensus 17 ~C~~C~~~I~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 17 FCHGCSLLMTG-PFMVAGEFKYHPEC--------FACMSCKVIIED 53 (81)
T ss_dssp BCTTTCCBCCS-CCBCCTTCCBCTTS--------CBCTTTCCBCCT
T ss_pred cCccCCCCcCc-eEEEECCceecccc--------CCccCCCCccCC
Confidence 47777777763 44555666665555 477888888754
No 312
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.87 E-value=13 Score=27.42 Aligned_cols=33 Identities=21% Similarity=0.546 Sum_probs=26.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|....+...=|.+||..|..+.+.
T Consensus 43 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 43 FRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp CBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 678999999976556667799999999988754
No 313
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=50.61 E-value=37 Score=25.74 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
.++...+.+...+..++.+.+.++++..+|+..+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433
No 314
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=50.47 E-value=62 Score=24.00 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIES 142 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~ 142 (302)
+.+..+..+++.+..++..++.+...
T Consensus 6 k~i~~l~~E~eel~~klk~~~ee~~~ 31 (71)
T 1s1c_X 6 KDIEILRRENEELTEKMKKAEEEYKL 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 315
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=49.51 E-value=66 Score=29.58 Aligned_cols=30 Identities=10% Similarity=0.243 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKL 164 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qL 164 (302)
..+++..++.++.+|+-.+.---.|+.+.+
T Consensus 227 ~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 227 GVENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443334444333
No 316
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=49.29 E-value=34 Score=29.08 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=25.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 138 QEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 138 ~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
+|++.|+.+...+.+..+.|..++++|..-+..+|
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777778888888888877777776665544
No 317
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=49.05 E-value=62 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
..++.-.+.|-.+++||+..-.++.+++..|+.
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 333334445555555555555555544444443
No 318
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.79 E-value=5.6 Score=28.77 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 42 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~ 74 (79)
T 1x62_A 42 YVCTDCGTNLKQKGHFFVEDQIYCEKHARERVS 74 (79)
T ss_dssp TSCSSSCCCHHHHCCEESSSCEECHHHHHHHHS
T ss_pred CeeCCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 578888888865445566788899888877664
No 319
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=48.65 E-value=80 Score=29.88 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelY 168 (302)
-++.+|.....+..+..+-|
T Consensus 168 K~~~k~~k~~~~~~~a~neY 187 (406)
T 4dyl_A 168 KAKDKYVRSLWKLFAHHNRY 187 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333
No 320
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=48.54 E-value=48 Score=24.73 Aligned_cols=10 Identities=10% Similarity=0.415 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 022126 164 LDEMYDQLRS 173 (302)
Q Consensus 164 LqelYdkLK~ 173 (302)
+..|+++|+.
T Consensus 51 l~~L~~rl~~ 60 (78)
T 3efg_A 51 IRHLLEDLGK 60 (78)
T ss_dssp HHHHHHTC--
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 321
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=48.47 E-value=16 Score=27.12 Aligned_cols=33 Identities=12% Similarity=0.334 Sum_probs=28.0
Q ss_pred CCCCCCCccccccCCCcccccCCChHHHHHHhcCC-ChHHHHH
Q 022126 35 DAACPICDQVLSKSLMKPVDINPNDEWVNMAMAGV-SPQILMK 76 (302)
Q Consensus 35 ~~~CPvC~~~l~~~div~~~LnPse~~Kt~vL~Gl-sP~~Ime 76 (302)
...|..|++.++ +..+.|+..+-.|. +|..+++
T Consensus 4 PVRCFTCGkvi~---------~~we~y~~~~~~g~l~~~~~LD 37 (70)
T 1twf_J 4 PVRCFSCGKVVG---------DKWESYLNLLQEDELDEGTALS 37 (70)
T ss_dssp CSBCTTTCCBCT---------TCHHHHHHHHHTSCCCHHHHHH
T ss_pred CeecCCCCCChH---------HHHHHHHHHHHcCCCCHHHHHH
Confidence 357999999765 36789999999999 9999996
No 322
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=48.28 E-value=1.4e+02 Score=26.08 Aligned_cols=29 Identities=3% Similarity=0.175 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMYDQLRSEYES 177 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelYdkLK~~~e~ 177 (302)
-++.++.++.++..+..+-|......++.
T Consensus 176 K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~ 204 (305)
T 2efl_A 176 KARQQAQIRHQMAEDSKADYSSILQKFNH 204 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555566666555544443
No 323
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=48.25 E-value=1.3e+02 Score=28.68 Aligned_cols=46 Identities=11% Similarity=0.424 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.++..++.++...+.|.+.++.+.-.+++++.-+++||-.+-+++.
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3444445555555566666666666777777777888777665554
No 324
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=48.19 E-value=62 Score=23.31 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKF-------SEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky-------~EKsRq~~qLqelYdkLK~~ 174 (302)
.+..+.|..|++..+|.++| -+.|+++-+|-+.|.+++.+
T Consensus 5 ~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 5 KLNDRIEAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777766 34677777777777777654
No 325
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=48.17 E-value=1.5e+02 Score=26.43 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYD-QLRSE 174 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYd-kLK~~ 174 (302)
..-|..+|.+-..+|++.|..|. ++|.+
T Consensus 120 ~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~ 148 (267)
T 1dn1_B 120 HSTLSRKFVEVMSEYNATQSDYRERCKGR 148 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888884 45665
No 326
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=48.07 E-value=89 Score=23.75 Aligned_cols=16 Identities=13% Similarity=0.239 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhHHH
Q 022126 134 QMMEQEIESLSKDKQE 149 (302)
Q Consensus 134 ~~me~E~e~LrKkn~E 149 (302)
.++..|++.++++..|
T Consensus 55 ~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 55 RDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 327
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.05 E-value=85 Score=28.11 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 022126 161 KRKLDEMYDQLRSE 174 (302)
Q Consensus 161 ~~qLqelYdkLK~~ 174 (302)
+..++.-+..++.+
T Consensus 130 l~~~~a~l~~a~a~ 143 (341)
T 3fpp_A 130 IGTIDAQIKRNQAS 143 (341)
T ss_dssp HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 328
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.61 E-value=1e+02 Score=27.87 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 153 KFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 153 ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
.|.....++..++.-++.++.+++.+
T Consensus 123 ~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 123 TLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444
No 329
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=47.22 E-value=45 Score=21.34 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ 152 (302)
|+.++-.+.+.|+.++.-|++
T Consensus 9 kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 333333344444444444433
No 330
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=47.05 E-value=27 Score=25.63 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 147 KQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 147 n~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
+.||+..+.+|..+.++|++..+++++=
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~qsV 54 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKCQSV 54 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666666666666665543
No 331
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=47.05 E-value=2.1e+02 Score=28.53 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAI 183 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~ 183 (302)
..++.|.+.+++++.+|++.+....+...-+.+-+..++.+|..-||+.+
T Consensus 457 ~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~RrT~i 506 (514)
T 2inr_A 457 VALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLI 506 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 45667777777777777777777666666666666666777665555544
No 332
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.62 E-value=8.3 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.505 Sum_probs=27.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 678999999976666777799999999987753
No 333
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.60 E-value=11 Score=26.38 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=27.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~ 67 (72)
T 1x4l_A 36 FNCKKCSLSLVGRGFLTERDDILCPDCGKDIS 67 (72)
T ss_dssp CBCSSSCCBCTTSCCEECSSSEECHHHHHTCC
T ss_pred CEeccCCCcCCCCccEeECCEEEChhHcCccc
Confidence 67999999998777777889999999988764
No 334
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=46.51 E-value=29 Score=23.32 Aligned_cols=6 Identities=0% Similarity=0.379 Sum_probs=2.3
Q ss_pred HHHHHH
Q 022126 119 LEQVHT 124 (302)
Q Consensus 119 i~e~~s 124 (302)
+.++++
T Consensus 11 vsel~~ 16 (43)
T 2pnv_A 11 ISDLNE 16 (43)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333433
No 335
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.38 E-value=1.3e+02 Score=25.30 Aligned_cols=42 Identities=19% Similarity=0.395 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKF-SE-------KSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky-~E-------KsRq~~qLqelYdkLK~~~e 176 (302)
..+.+...+.++.+||...+ .| -.++...++.--++|+.++.
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888887544 33 33455566666666666654
No 336
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.38 E-value=11 Score=26.42 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=27.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 65 (72)
T 1wyh_A 34 FLCSGCEQPLGSRSFVPDKGAHYCVPCYENKF 65 (72)
T ss_dssp CBCTTTCCBTTTSCEEEETTEEEEHHHHHHHT
T ss_pred CeECCCCCcCCCCccCCcCCeEECHHHHHHHc
Confidence 67889999998667777889999999988765
No 337
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=46.33 E-value=74 Score=27.57 Aligned_cols=95 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred hcCCChHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 66 MAGVSPQILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAM---QEKFTEKLEQVHTAYQKMAKRCQMMEQEIES 142 (302)
Q Consensus 66 L~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L---~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~ 142 (302)
|.|+-=+.++.....-+.-|..|...-. .++..+..+|... .+..++.+++...-|+..+.++.++++.+++
T Consensus 61 L~~IlG~~SlTqL~nrL~~wlsQ~em~~-----qks~EFSD~~qTaL~eAQ~AtD~y~~Ainny~~Ads~~~~lekKvn~ 135 (201)
T 3u0c_A 61 LIQILGEKSLTALTNKITAWKSQQQARQ-----QKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ 135 (201)
T ss_dssp HHHHHCSGGGHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHH---HHHHHHHHHHHHHH
Q 022126 143 LSKDKQELQ---EKFSEKSRQKRKLD 165 (302)
Q Consensus 143 LrKkn~ELq---~ky~EKsRq~~qLq 165 (302)
+..+..+|+ =.|..-+|+--||.
T Consensus 136 aq~kLs~L~P~dP~Y~K~~~~~~~~~ 161 (201)
T 3u0c_A 136 IQTRLSELDPESPEKKKLSREEIQLT 161 (201)
T ss_dssp HHHHHHTSCSSCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCccccccHHHHhhh
No 338
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=45.95 E-value=61 Score=26.44 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
+++++..++..++++...+..++...+.+....+++
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443444443333333333333
No 339
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=45.91 E-value=39 Score=30.50 Aligned_cols=45 Identities=9% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
+++...+.|...++|+...-.++.+...++++-...|-.+ +|+..
T Consensus 10 ~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~---iRr~N 54 (233)
T 2yko_A 10 QLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDY---VKRPN 54 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcccc
Confidence 3333334444444444444444555454444333333333 55554
No 340
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=45.88 E-value=10 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.424 Sum_probs=27.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 32 FVCAKCEKPFLGHRHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CBCTTTCCBCSSSCCEEETTEEECHHHHHHHCS
T ss_pred CEECCCCCCCCCCceEeECCcEECHHHHHHHhC
Confidence 678999999976666778899999999877653
No 341
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.86 E-value=94 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQE 152 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ 152 (302)
+.+|+....+++..++.|++|++||.+
T Consensus 48 i~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566666666666666643
No 342
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.73 E-value=4.1 Score=29.55 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=22.7
Q ss_pred ccccCccccc-CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELE-GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.|. +..++..=|..|-..|. .|-.|++.|...
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGCF--------RCCRCQRSLADE 56 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTTS--------BCTTTCCBCSSC
T ss_pred cCccCCCccccCcEEEEeCCccccccCC--------eecCCCCccCCC
Confidence 4777887776 34445544555544443 466677776543
No 343
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=45.50 E-value=1.3e+02 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 022126 148 QELQEKFSEKSRQK-RKLDEMYDQLRSEYES 177 (302)
Q Consensus 148 ~ELq~ky~EKsRq~-~qLqelYdkLK~~~e~ 177 (302)
++|+.++......+ .+|..+++.++.++..
T Consensus 201 e~lr~~l~p~~e~lk~~l~p~~e~~~~~l~~ 231 (243)
T 2a01_A 201 STLSEKAKPALEDLRQGLLPVLESFKVSFLS 231 (243)
T ss_dssp HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33443433333333 2455555555555443
No 344
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.46 E-value=1.1e+02 Score=23.96 Aligned_cols=27 Identities=4% Similarity=0.187 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 110 AMQEKFTEKLEQVHTAYQKMAKRCQMM 136 (302)
Q Consensus 110 ~L~~~l~~ki~e~~s~~~kl~~kl~~m 136 (302)
.|...++....+++.+|+.|.+++..|
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555544443
No 345
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.45 E-value=65 Score=21.48 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~k 153 (302)
+..++.|++.|+|+..-|+.+
T Consensus 22 laaleselqalekklaalksk 42 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666655555443
No 346
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=45.44 E-value=40 Score=23.16 Aligned_cols=22 Identities=9% Similarity=0.439 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQEKFTEKLEQ 121 (302)
Q Consensus 100 l~~~lreK~e~L~~~l~~ki~e 121 (302)
++.++..|+..|...+-.++.+
T Consensus 14 LL~qmq~kFq~mS~~I~~riDd 35 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDD 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333
No 347
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=45.22 E-value=1.4e+02 Score=25.12 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQ 160 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq 160 (302)
+....+.++.+..=+.+.|+++-++
T Consensus 109 ~~~~~e~lr~~l~Py~~el~~~~~~ 133 (185)
T 3r2p_A 109 WQEEMELYRQKVEPLRAELQEGARQ 133 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777766666666665553
No 348
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=45.08 E-value=1.1e+02 Score=29.83 Aligned_cols=32 Identities=3% Similarity=0.116 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 149 ELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 149 ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
-+...+.+...++..|+..|..+...+..+..
T Consensus 332 ~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~ 363 (483)
T 2j1d_G 332 VVSQFITVASFSFSDVEDLLAEAKDLFTKAVK 363 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777777777777666544
No 349
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=44.73 E-value=2.3e+02 Score=27.90 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 160 QKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 160 q~~qLqelYdkLK~~~e~~ 178 (302)
.++.|+..++.+++++..+
T Consensus 164 ~i~~l~~~~~~~~~~i~~l 182 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKL 182 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554433
No 350
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.51 E-value=11 Score=26.46 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=28.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcC
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSN 34 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~ 34 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+..
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 6799999999776677778999999999887653
No 351
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=44.48 E-value=86 Score=22.57 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 125 AYQKMAKRCQMMEQEIESL 143 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~L 143 (302)
++..+...++.++.|++.+
T Consensus 57 Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 57 ESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333444444444444433
No 352
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=44.39 E-value=55 Score=20.31 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~ELq 151 (302)
++.+..++.|...|+=++.-|+
T Consensus 8 kqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 8 KQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 353
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.35 E-value=98 Score=25.02 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=2.3
Q ss_pred CCChHH
Q 022126 68 GVSPQI 73 (302)
Q Consensus 68 GlsP~~ 73 (302)
|++.+.
T Consensus 59 G~sL~e 64 (142)
T 3gp4_A 59 GLSIEA 64 (142)
T ss_dssp TCCHHH
T ss_pred CCCHHH
Confidence 333333
No 354
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=44.34 E-value=2.2e+02 Score=29.66 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 022126 134 QMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAIQ 184 (302)
Q Consensus 134 ~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~~ 184 (302)
..++.|.+.|.+++.+|++.+....+...-+.+-+..++.+|..-||+.+.
T Consensus 405 ~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~kygd~RRT~I~ 455 (716)
T 1zvu_A 405 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 455 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 467889999999999999999999998888888888999998888888764
No 355
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.28 E-value=1.5e+02 Score=26.21 Aligned_cols=32 Identities=9% Similarity=0.309 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQ 148 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ 148 (302)
.++.++..++..++.++.-+.+|.+++||...
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555566666665544
No 356
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.19 E-value=58 Score=21.83 Aligned_cols=8 Identities=13% Similarity=0.310 Sum_probs=2.9
Q ss_pred HHhHHHHH
Q 022126 144 SKDKQELQ 151 (302)
Q Consensus 144 rKkn~ELq 151 (302)
++++.|||
T Consensus 22 e~kI~~lq 29 (42)
T 2l5g_B 22 EQQISKLK 29 (42)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 357
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=43.99 E-value=63 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 150 LQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 150 Lq~ky~EKsRq~~qLqelY 168 (302)
|..+|.+--.+|+++|.-|
T Consensus 131 L~~kf~~~m~~yq~~q~~y 149 (180)
T 1s94_A 131 ISRKFVEVMSDYNTTQIDY 149 (180)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 358
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=43.67 E-value=36 Score=21.87 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 022126 132 RCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~EL 150 (302)
|.++-++++++|+++|.-|
T Consensus 8 Kn~a~qqDIddlkrQN~~L 26 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHH
Confidence 3344444445555444443
No 359
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=43.64 E-value=2.3e+02 Score=27.26 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 022126 148 QELQEKFSEKS 158 (302)
Q Consensus 148 ~ELq~ky~EKs 158 (302)
+.++.+++...
T Consensus 188 eK~~~k~~k~~ 198 (486)
T 3haj_A 188 KKLQDKIEKCK 198 (486)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 360
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.63 E-value=13 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.514 Sum_probs=25.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKI 31 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~ 31 (302)
|.|..|.+.|.+..+...=|.+||..|..+.
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 6799999999877777888999999997554
No 361
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=43.58 E-value=74 Score=24.80 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 154 FSEKSRQKRKLDEMYD 169 (302)
Q Consensus 154 y~EKsRq~~qLqelYd 169 (302)
|.+-...+++++.-|+
T Consensus 73 F~~l~~~fQ~~qr~y~ 88 (97)
T 1hs7_A 73 FKNLKTKYQSLQQSYN 88 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 362
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=43.54 E-value=50 Score=29.25 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=16.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 142 SLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 142 ~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.+..++.+|+..+.+-.-++..++.-|+.+|++.+
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~ 97 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTR 97 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555555555555543
No 363
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=43.34 E-value=1.4e+02 Score=24.72 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 022126 136 MEQEIESLSKDKQELQEKFSEKSRQ 160 (302)
Q Consensus 136 me~E~e~LrKkn~ELq~ky~EKsRq 160 (302)
+..+...+-.+.+.++..|.++.|+
T Consensus 89 L~~~f~~~~~~fq~~Q~~~~~~~k~ 113 (196)
T 1fio_A 89 SRQRFLKLIQDYRIVDSNYKEENKE 113 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555554443
No 364
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=43.34 E-value=69 Score=26.10 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 022126 122 VHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKR 162 (302)
Q Consensus 122 ~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~ 162 (302)
++.+++-+.+|+..++..++.+.+...++.+.+..-....+
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666665555555444333333
No 365
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.14 E-value=14 Score=27.23 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=27.2
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 52 F~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 52 FNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp CBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred CccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 679999999986666777899999999988753
No 366
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.14 E-value=82 Score=29.81 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..++...+.++.+....+++.++.-++.++-.-+.++|++-.+.+|-.
T Consensus 13 ~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~ 60 (333)
T 4etp_B 13 AALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGT 60 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCc
Confidence 333344444555555555566666666665555566666666666654
No 367
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=43.12 E-value=2.3e+02 Score=27.21 Aligned_cols=10 Identities=10% Similarity=-0.150 Sum_probs=0.0
Q ss_pred cccccCCCCC
Q 022126 212 DWSVYSPGTP 221 (302)
Q Consensus 212 ~~~~~~~~~~ 221 (302)
|-.+++..+|
T Consensus 322 ~~v~l~~~~~ 331 (486)
T 3haj_A 322 DGVTLTGINQ 331 (486)
T ss_dssp ----------
T ss_pred Cceeeecccc
Confidence 3344443333
No 368
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.07 E-value=12 Score=27.65 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=25.4
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 52 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 52 FVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp CCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred CEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 678899999875444556789999999887654
No 369
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=42.99 E-value=1.3e+02 Score=24.25 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e 176 (302)
.++..+..++..++.++..+. -+......+++.|-.|++..+|.. +.+||+.++.++.
T Consensus 11 ~L~~~i~~l~~~L~~lkqa~k---~~~~~~~~eL~~LI~KWr~asq~a--aeeLf~~~~~rv~ 68 (122)
T 3viq_A 11 KLEKEVRNLQEQLITAETARK---VEAKNEDKDLQTLIQKWKNAAQQA--AEVLFKPMAERIR 68 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 344455555555555543221 112222345778888899888854 6789999988854
No 370
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=42.87 E-value=46 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=7.9
Q ss_pred HHhHHHHHHHHHHHH
Q 022126 144 SKDKQELQEKFSEKS 158 (302)
Q Consensus 144 rKkn~ELq~ky~EKs 158 (302)
.+++.||...|..|-
T Consensus 27 e~Ei~elr~RY~~KR 41 (51)
T 2jo8_A 27 EQEIEEIRQKYQSKR 41 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhH
Confidence 344555555566543
No 371
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=42.87 E-value=1.1e+02 Score=23.13 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 022126 163 KLDEMYDQL 171 (302)
Q Consensus 163 qLqelYdkL 171 (302)
.|++-+..|
T Consensus 74 eLE~~l~el 82 (89)
T 3bas_A 74 HLENEVARL 82 (89)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 372
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.76 E-value=12 Score=26.06 Aligned_cols=33 Identities=12% Similarity=0.300 Sum_probs=27.1
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 66 (72)
T 1x4k_A 34 FICHRCQQPIGTKSFIPKDNQNFCVPCYEKQHA 66 (72)
T ss_dssp TCCSSSCCCCCSSSEEEETTEEEEHHHHHHHTS
T ss_pred CcccccCCccCCCccCccCCeEECHHHHhHHhC
Confidence 678999999986667777799999999987653
No 373
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=42.65 E-value=2.3e+02 Score=26.89 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
+.|+.++.++....+.|..+.......+.+-.|+...|.=-.-+|
T Consensus 208 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql 252 (373)
T 3hhm_B 208 DKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQL 252 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 344555555555555555555555555555555555444333333
No 374
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=42.63 E-value=1.7e+02 Score=25.41 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=15.6
Q ss_pred cCCChHHHHHHHHHhhhhhh
Q 022126 67 AGVSPQILMKSAYRSVMFYL 86 (302)
Q Consensus 67 ~GlsP~~Ime~a~RAi~Fw~ 86 (302)
.||+.++|-++...+..|..
T Consensus 117 ~~Ls~eeI~~m~~~a~~~~~ 136 (219)
T 4e81_A 117 SGLNEDEIQKMVRDAEANAE 136 (219)
T ss_dssp CSCCHHHHHHHHHHHHHTHH
T ss_pred ccccHHHHHHHHHHHHHhhh
Confidence 58999999888777776643
No 375
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.60 E-value=16 Score=25.42 Aligned_cols=32 Identities=19% Similarity=0.476 Sum_probs=26.7
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 32 FVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp SBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 67899999997666667789999999988765
No 376
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.56 E-value=40 Score=24.63 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022126 154 FSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 154 y~EKsRq~~qLqelYdkLK~~ 174 (302)
|.-=.|++-||.+-|.+|+..
T Consensus 34 WaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 34 WTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555544
No 377
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.55 E-value=49 Score=21.24 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 143 LSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 143 LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
+++||++.|.-..|-.||...|++
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHH
Confidence 456666666666666666665554
No 378
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.47 E-value=12 Score=26.57 Aligned_cols=32 Identities=16% Similarity=0.465 Sum_probs=23.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+
T Consensus 40 F~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 71 (77)
T 1g47_A 40 FVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLF 71 (77)
T ss_dssp CCCTTTCCCCGGGCSEEETTEEECHHHHHHHC
T ss_pred CeECCCCCCCCCCCeEeECCeEeCHHHHHHHh
Confidence 56888888886545566778888988887664
No 379
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=42.36 E-value=22 Score=29.31 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky 154 (302)
+..+..|+..++|++++|+.++
T Consensus 34 v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 34 VERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 380
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=42.12 E-value=2.5e+02 Score=27.22 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
++..++.-+......+.+|++.+.-...++++|.+....|..+
T Consensus 92 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666777777777776666666666666554
No 381
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=42.03 E-value=95 Score=26.09 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 022126 165 DEMYDQLRSEYESMKR 180 (302)
Q Consensus 165 qelYdkLK~~~e~~~r 180 (302)
++|..+++..++.++.
T Consensus 142 eeL~~~~~~~~eeLr~ 157 (165)
T 1gs9_A 142 RKLRKRLLRDADDLQK 157 (165)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 3334444444444444
No 382
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=41.71 E-value=7.9 Score=27.95 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=26.6
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQ 43 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~ 43 (302)
|.|..|.+.|....+...=|.+||..|..+.+ ...|-.|+.
T Consensus 35 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f--~~~c~gcg~ 75 (81)
T 1a7i_A 35 FLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY--GPKGYGYGQ 75 (81)
T ss_dssp EECSSSCCEECSSCCEEETTEEECSHHHHHHC--C--------
T ss_pred CccCCCCCCCCCCCeEeeCCEEECHHHHHHHh--CCcccccCC
Confidence 57889999997655666789999999998764 445666654
No 383
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=41.70 E-value=18 Score=35.99 Aligned_cols=57 Identities=7% Similarity=0.182 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSAIQPSNSF 189 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa~~~a~~~ 189 (302)
...++.|.+.+++++.+|+..+....+...-+.+-+..++.+|..-||+.+..+...
T Consensus 432 ~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~~RrT~i~~~~~~ 488 (496)
T 2nov_A 432 VVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKA 488 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCCCCCSBC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceeecchhh
Confidence 356778888888888888888888777777777777788888877777766554433
No 384
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=41.68 E-value=77 Score=29.94 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEK------SRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EK------sRq~~qLqelYdkLK~~~e~~ 178 (302)
++.++.+++.|.++..+|.++++++ .+|+.++++-++.+..++..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666676666543 344455555555555554444
No 385
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.38 E-value=1.5e+02 Score=28.73 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~~e~~ 178 (302)
..++..|++-...+..++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 82 VKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555554433
No 386
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=41.16 E-value=1.2e+02 Score=23.43 Aligned_cols=8 Identities=25% Similarity=0.380 Sum_probs=4.6
Q ss_pred HHHHHHHH
Q 022126 169 DQLRSEYE 176 (302)
Q Consensus 169 dkLK~~~e 176 (302)
..||+++|
T Consensus 78 ~rLr~eLe 85 (92)
T 3vp9_A 78 KHLKLGLE 85 (92)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 45666655
No 387
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=40.97 E-value=12 Score=26.02 Aligned_cols=15 Identities=20% Similarity=0.713 Sum_probs=12.0
Q ss_pred CCCCCCCCccccccC
Q 022126 34 NDAACPICDQVLSKS 48 (302)
Q Consensus 34 ~~~~CPvC~~~l~~~ 48 (302)
....|+.|++.+...
T Consensus 31 kp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 31 RPRSCPECGKCFRDQ 45 (60)
T ss_dssp CCEECTTTCCEESSH
T ss_pred cCeECCCCCCCcCCH
Confidence 467899999998753
No 388
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=40.92 E-value=58 Score=30.44 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
+-++-++.|+.+.+|+.+.|+..+-..+|+|-+|..+..
T Consensus 221 ARE~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~ 259 (302)
T 3ibp_A 221 ARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSR 259 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 668899999999999999999999999999999998876
No 389
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.86 E-value=5.4 Score=26.90 Aligned_cols=33 Identities=15% Similarity=0.389 Sum_probs=20.2
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|++|.+.+........ .....|+.|++.+...
T Consensus 20 ~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~~ 52 (73)
T 2ctu_A 20 KCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQE 52 (73)
T ss_dssp ECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSCC
T ss_pred eCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcCH
Confidence 57788777753222222 3466788888877554
No 390
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=40.77 E-value=86 Score=22.24 Aligned_cols=17 Identities=47% Similarity=0.647 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSK 145 (302)
Q Consensus 129 l~~kl~~me~E~e~LrK 145 (302)
|+..+..+++|++.|.+
T Consensus 30 Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 30 LEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334445545444443
No 391
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=40.64 E-value=1.1e+02 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQMMEQEIE 141 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~~me~E~e 141 (302)
++++..+++.++.|+.|++-+-+|.+
T Consensus 6 EEKv~~LE~sld~LQTrfARLLaEy~ 31 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRFARILAEYE 31 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445544444444433333
No 392
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=40.59 E-value=84 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMM 136 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~m 136 (302)
++++.+++.++.|+.|.+-+
T Consensus 5 ekv~~Le~~ld~LqTr~ArL 24 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARL 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 393
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.54 E-value=5.8 Score=38.29 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQ 160 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq 160 (302)
+.+.++++.++-..+++||.++
T Consensus 363 ~~~~~~~~l~~~~~~l~~~~~~ 384 (418)
T 2qag_C 363 RHEQMKKNLEAQHKELEEKRRQ 384 (418)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 394
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.48 E-value=13 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=27.9
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS 33 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~ 33 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+.
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 679999999986667778899999999988764
No 395
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=40.25 E-value=48 Score=20.32 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhHH
Q 022126 132 RCQMMEQEIESLSKDKQ 148 (302)
Q Consensus 132 kl~~me~E~e~LrKkn~ 148 (302)
|+..++..++.|+|+.+
T Consensus 9 kcaalesklqalekkle 25 (31)
T 3ljm_A 9 KCAALESKLQALEKKLE 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 396
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.12 E-value=11 Score=26.82 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+....+++.-|..|-..| +.|..|+++|....
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C--------F~C~~C~~~L~~~~ 41 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC--------LKCEKCGKTLTSGG 41 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT--------CBCTTTCCBCCTTT
T ss_pred cCCCCCCEEECceEEEECCccccCCC--------CCccccCccCCCCc
Confidence 58999999873345666687776655 58999999987654
No 397
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.79 E-value=1.4e+02 Score=23.77 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMA---KRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~---~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.+.++...+.........++.++-..+. .++..+......|..++.||...+.+-..+...|+....+|..++..+
T Consensus 37 ~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~L 116 (129)
T 2fxo_A 37 KELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 022126 179 K 179 (302)
Q Consensus 179 ~ 179 (302)
+
T Consensus 117 k 117 (129)
T 2fxo_A 117 K 117 (129)
T ss_dssp H
T ss_pred H
No 398
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.72 E-value=12 Score=27.31 Aligned_cols=38 Identities=16% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.|....++..-|..|-..|. .|-.|++.|..
T Consensus 17 ~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 54 (80)
T 2dj7_A 17 HCAGCKEEIKHGQSLLALDKQWHVSCF--------KCQTCSVILTG 54 (80)
T ss_dssp CCTTTCCCCSSSCCEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCcCcCCeeCCCeEEEECCcccccccC--------CcCcCCCCcCC
Confidence 577888877533345556666656554 57777777763
No 399
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=39.71 E-value=1.4e+02 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQM 135 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~ 135 (302)
..+..+++-++.++.++.++.+
T Consensus 52 anTr~lQqh~aRlnsqQrQI~E 73 (114)
T 2xzr_A 52 ANTRTLQQHSARLDSQQRQINE 73 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhHHHHHHH
Confidence 3344444444444444433333
No 400
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=39.52 E-value=1.6e+02 Score=24.39 Aligned_cols=11 Identities=9% Similarity=0.323 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q 022126 118 KLEQVHTAYQK 128 (302)
Q Consensus 118 ki~e~~s~~~k 128 (302)
++.++..+++.
T Consensus 74 ~F~~Ld~~L~~ 84 (140)
T 1xaw_A 74 ELSRLDKELDD 84 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 34444444443
No 401
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=39.35 E-value=1e+02 Score=22.06 Aligned_cols=68 Identities=6% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFTEKLEQVHTAYQKMA------------KRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMY 168 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~~ki~e~~s~~~kl~------------~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelY 168 (302)
+...-..+......+...+..+.+.++.|. ............+....+++.+.|.....++++...-|
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A~~~~~~D~~y 93 (93)
T 4ioe_A 14 LERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIADKFRNTDNAY 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 402
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=38.83 E-value=65 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 153 KFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 153 ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
||.-=.|++-||.+-|++++.++...
T Consensus 50 KWaKL~Rk~DKl~~ele~l~~~l~~~ 75 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEINNLKDEIQSE 75 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554443
No 403
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=38.80 E-value=1.6e+02 Score=23.92 Aligned_cols=37 Identities=8% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
..+-..|=++..++..++..+-++.+++-..|.++..
T Consensus 70 K~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~Iq~ 106 (119)
T 2avr_X 70 KSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777777777743
No 404
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=38.44 E-value=1.6e+02 Score=25.90 Aligned_cols=59 Identities=15% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 100 l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKs 158 (302)
+.+..+..+|.-.-.+...-.+++..++++++.-..-+.+.....++++.|.++|-.+-
T Consensus 137 lvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~i 195 (209)
T 4gfq_A 137 LVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKV 195 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666666666666543211224455555666666666665443
No 405
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.34 E-value=2.5e+02 Score=27.73 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=9.4
Q ss_pred Cccc-ccccccCCCC--CCCCCCCc
Q 022126 207 DPIR-KDWSVYSPGT--PGPREDIW 228 (302)
Q Consensus 207 ~~~r-~~~~~~~~~~--~~~~~~~~ 228 (302)
++.+ .|+..+..++ -|++--.|
T Consensus 190 ~Lg~~lgl~d~~~~~k~~G~g~~~l 214 (501)
T 1wle_A 190 EIAEKLDIIRQKRLSHVSGHRSYYL 214 (501)
T ss_dssp HHHHHHTCEECTTCTTTTCTTCCEE
T ss_pred HHHhhcCceecccccccccCceEEE
Confidence 3344 3444444332 35544444
No 406
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=38.29 E-value=1.5e+02 Score=23.73 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFT---EKLEQVHTAYQK-----MAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~---~ki~e~~s~~~k-----l~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
++.+.+.+...+.+|. .|+.+++.++.. -+..+..-+.+...++.|+.||++.+.|.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=38.24 E-value=3.1e+02 Score=27.25 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 152 EKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 152 ~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
.+|...--++.+-...|+.=+.++.+...
T Consensus 76 akY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 76 AKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555444433
No 408
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=38.12 E-value=1e+02 Score=21.82 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky 154 (302)
|..|++.++..+.....+++-|.+.+
T Consensus 23 L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 23 LAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444444444443
No 409
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=37.97 E-value=58 Score=20.84 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHHH
Q 022126 136 MEQEIE 141 (302)
Q Consensus 136 me~E~e 141 (302)
++.|..
T Consensus 20 Le~EV~ 25 (34)
T 3c3f_A 20 XENEXA 25 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 410
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.74 E-value=42 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHhHHHHHHHH
Q 022126 116 TEKLEQVHTAYQKMAKRCQ------------MMEQEIESLSKDKQELQEKF 154 (302)
Q Consensus 116 ~~ki~e~~s~~~kl~~kl~------------~me~E~e~LrKkn~ELq~ky 154 (302)
+..|..++..+|++.+|+. ....|.+.|.++++-|..+-
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666655543 45667777777776665544
No 411
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.34 E-value=79 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQ 148 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ 148 (302)
..|+.++..|+.|.+.|+..++
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 412
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=37.33 E-value=1.7e+02 Score=26.65 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=0.0
Q ss_pred CccccCCCC--CCcccC
Q 022126 229 PARQNSSNS--GPFDIA 243 (302)
Q Consensus 229 ~~~~~~~~~--~~~~~~ 243 (302)
|+..-..|. -||+.=
T Consensus 328 pPt~l~n~~~~~~fe~i 344 (357)
T 3rrk_A 328 VPVTLENPAWAKPFELL 344 (357)
T ss_dssp -----------------
T ss_pred cCEeccCCchhhHHHHH
Confidence 555544444 677653
No 413
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.25 E-value=1.9e+02 Score=28.51 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSEYE 176 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~~e 176 (302)
..++..|++....+..++.
T Consensus 84 ~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 84 SNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444545544
No 414
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.15 E-value=16 Score=28.59 Aligned_cols=37 Identities=19% Similarity=0.434 Sum_probs=30.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.|..|.+.+.+..+++.-|..|-..| +.|-.|+++|.
T Consensus 7 ~C~~C~~~I~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~ 43 (122)
T 1m3v_A 7 RCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 43 (122)
T ss_dssp CBSSSSSCCCSSCCEEETTEEECHHH--------HCCSSSCCCTT
T ss_pred CCcccCCEeCCcEEEEECCceeHhhC--------CCcCCCCCccc
Confidence 69999999986656788888888888 38999999986
No 415
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=37.11 E-value=5.6 Score=37.12 Aligned_cols=46 Identities=20% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRSA 182 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rsa 182 (302)
+...+.+-++..|+...|.+|+|++.+|.+.|+++..++..-|.+.
T Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~ 55 (302)
T 2y3a_B 10 EDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAI 55 (302)
T ss_dssp -----------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 416
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.93 E-value=23 Score=22.57 Aligned_cols=14 Identities=14% Similarity=0.560 Sum_probs=10.9
Q ss_pred CCCCCCCCcccccc
Q 022126 34 NDAACPICDQVLSK 47 (302)
Q Consensus 34 ~~~~CPvC~~~l~~ 47 (302)
....|+.|++.+..
T Consensus 31 ~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 31 KPYKCEFCEYAAAQ 44 (57)
T ss_dssp CCEECSSSSCEESS
T ss_pred CCcCCCCCcchhCC
Confidence 35689999998764
No 417
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.91 E-value=7.2 Score=28.79 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=18.6
Q ss_pred ccccCcccccCCc----EEecCCccccHHH
Q 022126 2 RCNACWRELEGRA----ISTTCGHLLCTED 27 (302)
Q Consensus 2 ~CNiC~~~l~~~~----vvT~CGHiFC~~C 27 (302)
+|..|++.+. -+ +.-.||.+||...
T Consensus 17 rC~~C~kk~g-L~~~egf~CrCg~~FC~~H 45 (67)
T 1x4w_A 17 RCFQCQTKLE-LVQQELGSCRCGYVFCMLH 45 (67)
T ss_dssp BCSSSCCBCC-HHHHHHHCCSSSCCCCTTT
T ss_pred cchhhCCeec-ccccCceEecCCCEehhcc
Confidence 6889998764 22 4558999999865
No 418
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.85 E-value=58 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 121 QVHTAYQKMAKRCQMMEQE 139 (302)
Q Consensus 121 e~~s~~~kl~~kl~~me~E 139 (302)
+...+|.+++.++..++.|
T Consensus 12 EtkeQi~~l~~kl~~LkeE 30 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEE 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 419
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=36.80 E-value=21 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=13.6
Q ss_pred ccccHHHHHhhhcCCCCCCCCccccc
Q 022126 21 HLLCTEDANKILSNDAACPICDQVLS 46 (302)
Q Consensus 21 HiFC~~Ci~~~~~~~~~CPvC~~~l~ 46 (302)
.++|..|..+.+ ...|+.|++++.
T Consensus 3 ~~yC~~cy~~~~--~~~C~~C~~~I~ 26 (77)
T 2egq_A 3 SGSSGDCYKNFV--AKKCAGCKNPIT 26 (77)
T ss_dssp SSCCTTCCCSCC--CCCCSSSCCCCC
T ss_pred CeEchhHhchhh--CccCcccCCccc
Confidence 456666654432 346777776665
No 420
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=36.71 E-value=1.2e+02 Score=22.04 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 139 EIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 139 E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..+.++.....+.+.+.+-+..+.+.-.-|...-.+
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~ 91 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555444433
No 421
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.60 E-value=14 Score=26.50 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=28.1
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSL 49 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~d 49 (302)
.|..|.+.+.+ -+++.-|..|-..| +.|-.|++.|...+
T Consensus 17 ~C~~C~~~I~~-~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 17 RCFSCDQFIEG-EVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp BCTTTCCBCCS-CCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred cCccccCEecc-ceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 57888888874 45667777776655 57889999886544
No 422
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=36.59 E-value=65 Score=28.81 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 133 CQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 133 l~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.+.+.-+..|.+++++|+++|+ .+...-++++|..|+.+++.+
T Consensus 5 ~~~~~~~~~~l~~~~e~l~~~l~--~g~~~~~~~~~~el~~rv~~~ 48 (220)
T 2gtl_N 5 LGANAFLIIRLDRIIEKLRTKLD--EAEKIDPEHFVSEIDARVTKI 48 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHh--ccchhhHHHHHHHHhhhhhcC
Confidence 44455566788899999999998 444777888999998885533
No 423
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.58 E-value=16 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.644 Sum_probs=21.5
Q ss_pred CccccCcccccCCcEEec-CCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTT-CGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~-CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+... =|.+||..|..+.+
T Consensus 42 F~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~f 74 (81)
T 2dlo_A 42 FTCVVCHRGLDGIPFTVDATSQIHCIEDFHRKF 74 (81)
T ss_dssp CBCSSSCCBCTTSCEECCTTCCCEEHHHHHHHT
T ss_pred cCcccCCCccCCCeeEECCCCEEECHHHHHHHh
Confidence 567778877765544443 57788888876654
No 424
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.54 E-value=52 Score=24.90 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=5.6
Q ss_pred HHHHHHHHHhHHHH
Q 022126 137 EQEIESLSKDKQEL 150 (302)
Q Consensus 137 e~E~e~LrKkn~EL 150 (302)
+.+.+.|++++++|
T Consensus 72 ~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 72 RKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444433
No 425
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=36.41 E-value=9.4 Score=30.83 Aligned_cols=10 Identities=0% Similarity=0.345 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 022126 165 DEMYDQLRSE 174 (302)
Q Consensus 165 qelYdkLK~~ 174 (302)
+.+++++..-
T Consensus 96 ~~i~~~i~~a 105 (143)
T 1u2m_A 96 GKLVTRIQTA 105 (143)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 426
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.34 E-value=1.3e+02 Score=22.40 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 109 EAMQEKFTEKLEQVHTAYQKMAKRCQMMEQ 138 (302)
Q Consensus 109 e~L~~~l~~ki~e~~s~~~kl~~kl~~me~ 138 (302)
+.|+.+|-..+.+..+.-.+|++++..++.
T Consensus 17 d~LQTrfARLLaEy~ssQ~KLKqRit~LE~ 46 (74)
T 3swf_A 17 DLLQTRFARILAEYESMQQKLKQRLTKVEK 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555556555555553
No 427
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.19 E-value=28 Score=26.86 Aligned_cols=38 Identities=16% Similarity=0.453 Sum_probs=29.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCcccccc
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSK 47 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~ 47 (302)
.|..|.+.+.+..+++.-|..|-..| +.|-.|+++|..
T Consensus 5 ~C~~C~~~I~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~ 42 (114)
T 1j2o_A 5 TCGGCQQNIGDRYFLKAIDQYWHEDC--------LSCDLCGCRLGE 42 (114)
T ss_dssp CBSSSCSCBCSSEEEECSSSEECTTT--------CCCSSSCSCCCC
T ss_pred CCcCCCCeeCCcEEEEECchhHHHhc--------CcccccCCchhc
Confidence 59999999986657777777666555 589999999964
No 428
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=36.18 E-value=17 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=25.1
Q ss_pred CccccCcccccCCcEEecCCcccc-HHHHHhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLC-TEDANKI 31 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC-~~Ci~~~ 31 (302)
|.|..|.+.|.+..+...=|.+|| .+|..+.
T Consensus 33 F~C~~C~~~L~~~~f~~~~g~~yC~~~C~~k~ 64 (65)
T 2iyb_E 33 FLCSCCSKCLIGQKFMPVEGMVFCSVECKKRM 64 (65)
T ss_dssp SBCTTTCCBCTTSCCEEETTEEESSHHHHHTT
T ss_pred EECCCCCCcCCCCceEEECCEEecCHHHhhhh
Confidence 678899999987666677799999 8997653
No 429
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=36.17 E-value=7.5 Score=37.85 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 022126 141 ESLSKDKQELQEKFSEKS 158 (302)
Q Consensus 141 e~LrKkn~ELq~ky~EKs 158 (302)
+.++++.++-.++++||.
T Consensus 369 ~~~~~~~~~~~~~le~~~ 386 (427)
T 2qag_B 369 DRLKKLHQDEKKKLEDKK 386 (427)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 430
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=36.05 E-value=2.1e+02 Score=24.61 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 100 l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+.+..+..+|.-.-.+...-.+++..++++.+.=.--+.+....+++++.|.++|-.+
T Consensus 114 lvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 171 (185)
T 1eh1_A 114 LVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555445555555566666666653311112445555666666666666543
No 431
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.01 E-value=3.5e+02 Score=27.16 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=3.6
Q ss_pred CCChHHHH
Q 022126 68 GVSPQILM 75 (302)
Q Consensus 68 GlsP~~Im 75 (302)
|.--+.++
T Consensus 454 g~~~~~vl 461 (592)
T 1f5n_A 454 GIQAEEIL 461 (592)
T ss_dssp CTTHHHHH
T ss_pred cccHHHHH
Confidence 44444444
No 432
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.00 E-value=13 Score=27.16 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=22.9
Q ss_pred ccccCcccccCCcEEecCCccccHHHHHhhhcCCCCCCCCccccccC
Q 022126 2 RCNACWRELEGRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKS 48 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~ 48 (302)
.|..|.+.+...-++..-|.+|-..|. .|-.|++.|...
T Consensus 17 ~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 17 LCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp BCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 588898888533334445555544444 456677766543
No 433
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.80 E-value=18 Score=25.83 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=21.5
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+..+...=|.+||..|..+.+
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 73 (80)
T 2cuq_A 42 LVCTGCQTPLAGQQFTSRDEDPYCVACFGELF 73 (80)
T ss_dssp CBCSSSCCBCTTCCEEECSSSEEEHHHHHHHT
T ss_pred CCcccCCCcCCCCeeEeECCEEECHHHHHHHc
Confidence 46777777776555566667777777776654
No 434
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=35.63 E-value=66 Score=22.03 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 109 EAMQEKFTEKLEQVHTAYQKMAKRCQMME 137 (302)
Q Consensus 109 e~L~~~l~~ki~e~~s~~~kl~~kl~~me 137 (302)
.+|+.+|.....++-+.|+.+..++.++|
T Consensus 16 ~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 16 QQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566666555555555555555554444
No 435
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.59 E-value=15 Score=26.77 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=22.7
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|.+. +...=|.+||..|..+.|
T Consensus 43 F~C~~C~~~L~~~-~~~~~g~~yC~~~y~~~f 73 (80)
T 2dj7_A 43 FKCQTCSVILTGE-YISKDGVPYCESDYHAQF 73 (80)
T ss_dssp CBCSSSCCBCSSC-CEEETTEEECTTHHHHHT
T ss_pred CCcCcCCCCcCCC-eEEECCEEECHHHHHHHc
Confidence 5788888888754 455568888888887664
No 436
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=35.58 E-value=66 Score=22.93 Aligned_cols=28 Identities=7% Similarity=0.171 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 128 KMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 128 kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
.|..++..|+.+.+.|+.++..|.+.+.
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666666666665554
No 437
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=35.49 E-value=11 Score=27.21 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCCCCCCccccccCCCcccccCCChH
Q 022126 35 DAACPICDQVLSKSLMKPVDINPNDE 60 (302)
Q Consensus 35 ~~~CPvC~~~l~~~div~~~LnPse~ 60 (302)
...||.|+..+...+.- --+|.|.
T Consensus 18 k~~CP~CG~~T~~~hPa--rfSp~Dk 41 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPP--KFSLEDR 41 (60)
T ss_dssp SSBCSSSCSBCBCCCCC--CCCTTCT
T ss_pred cccCcCCCCcCCCCCCC--CCCCCcc
Confidence 56799999987644332 2345555
No 438
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=35.25 E-value=2.1e+02 Score=24.99 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022126 158 SRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 158 sRq~~qLqelYdkLK~~ 174 (302)
+-|+.|+.++-++|-++
T Consensus 185 NeKK~KIR~lq~~Ll~~ 201 (213)
T 1ik9_A 185 NEKKTKIRSLHNKLLNA 201 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 45666666666666555
No 439
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=34.93 E-value=60 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 022126 135 MMEQEIESLSKDKQELQEKF-------SEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 135 ~me~E~e~LrKkn~ELq~ky-------~EKsRq~~qLqelYdkLK 172 (302)
.+..++|..|++..+|..+| -+.|+++-+|-+.|.+++
T Consensus 5 ~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~ 49 (62)
T 2bzb_A 5 QLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVK 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45556677777777777766 234555555555555543
No 440
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.89 E-value=20 Score=26.10 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=17.1
Q ss_pred CccccCcccccCCcEE--ecCCccccHHHHHh
Q 022126 1 MRCNACWRELEGRAIS--TTCGHLLCTEDANK 30 (302)
Q Consensus 1 l~CNiC~~~l~~~~vv--T~CGHiFC~~Ci~~ 30 (302)
|.|..|.+.|....+. ..=|.+||..|..+
T Consensus 43 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~ 74 (82)
T 2co8_A 43 FRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQ 74 (82)
T ss_dssp CBCSSSCCBCCTTSEECCTTTCCCEETTTCCC
T ss_pred CEEcCCCCCcCCCceeEeCcCCEEEChHHHHh
Confidence 4566777766543333 24566666666543
No 441
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.86 E-value=59 Score=25.15 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 112 QEKFTEKLEQVHTAYQKMA 130 (302)
Q Consensus 112 ~~~l~~ki~e~~s~~~kl~ 130 (302)
...++..+.+++.-+++|.
T Consensus 40 i~~ie~~l~EA~ell~qMe 58 (102)
T 1vcs_A 40 VANVEKQLEEARELLEQMD 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555443
No 442
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.80 E-value=30 Score=33.40 Aligned_cols=41 Identities=17% Similarity=0.488 Sum_probs=28.2
Q ss_pred ccccCcccccCCcEE---ecCCccccHHHHHhhhc----------CCCCCCCCccc
Q 022126 2 RCNACWRELEGRAIS---TTCGHLLCTEDANKILS----------NDAACPICDQV 44 (302)
Q Consensus 2 ~CNiC~~~l~~~~vv---T~CGHiFC~~Ci~~~~~----------~~~~CPvC~~~ 44 (302)
.|-+|...- .-+. ..|...||..||.+.+. ....|-+|.-.
T Consensus 95 yCr~C~~Gg--~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 95 YCSICCSGE--TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SCTTTCCCS--SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cceEcCCCC--eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 466666532 2222 16999999999998863 25689999865
No 443
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.71 E-value=88 Score=20.94 Aligned_cols=23 Identities=4% Similarity=0.291 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMMEQE 139 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~me~E 139 (302)
++|..+..+|.+...++.+++..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444433
No 444
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.70 E-value=1.5e+02 Score=22.68 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022126 125 AYQKMAKRCQMMEQEIESLSKD 146 (302)
Q Consensus 125 ~~~kl~~kl~~me~E~e~LrKk 146 (302)
++..++..+..++.++..++.+
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e 59 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQ 59 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555544443
No 445
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=14 Score=26.50 Aligned_cols=32 Identities=13% Similarity=0.364 Sum_probs=23.5
Q ss_pred CccccCccccc-CCcEEecCCccccHHHHHhhh
Q 022126 1 MRCNACWRELE-GRAISTTCGHLLCTEDANKIL 32 (302)
Q Consensus 1 l~CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~ 32 (302)
|.|..|.+.|. +..+...=+.++|..|..+.+
T Consensus 42 F~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~ 74 (81)
T 1v6g_A 42 FVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVS 74 (81)
T ss_dssp SSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCS
T ss_pred CccccCCCCCCCCCEEEeCCCCEEChhhhcccC
Confidence 67899999986 345555555689999986654
No 446
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=34.34 E-value=2.3e+02 Score=24.48 Aligned_cols=66 Identities=6% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD----------EMYDQLRSEYESM 178 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq----------elYdkLK~~~e~~ 178 (302)
+.+...++.+.+.++.+..+...++.....+..+..+++..+.+-..++++++ .||.+|+..+...
T Consensus 65 q~~~~~~e~l~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~ 140 (192)
T 2p22_C 65 TDFAGKIHAFRDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKL 140 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
No 447
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=34.20 E-value=89 Score=20.92 Aligned_cols=11 Identities=0% Similarity=0.181 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q 022126 126 YQKMAKRCQMM 136 (302)
Q Consensus 126 ~~kl~~kl~~m 136 (302)
|..|..|+..+
T Consensus 25 i~~LE~KLd~L 35 (43)
T 2pnv_A 25 IVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 448
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=34.06 E-value=1.5e+02 Score=22.21 Aligned_cols=71 Identities=10% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK--FSEKSR-----QKRKLDEMYDQLRSEYESMKRSAIQPSNSF 189 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k--y~EKsR-----q~~qLqelYdkLK~~~e~~~rsa~~~a~~~ 189 (302)
..++...-..+......++.+++.|+..+.+|+.- ++-... ...++..-..+|+.-++.+.....+.+.+|
T Consensus 13 ~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~~y 90 (103)
T 4i0x_B 13 LDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHGAY 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 449
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=33.85 E-value=2.2e+02 Score=24.43 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 100 l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+.+..+..+|.-.-.+...-.+++..++++.+.=.--+.+....+++++.|.++|-.+
T Consensus 113 lvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1dd5_A 113 WVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEK 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4445555545444555555556666666543211112444555566666666666543
No 450
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=33.79 E-value=1.8e+02 Score=26.35 Aligned_cols=7 Identities=0% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCCcccC
Q 022126 237 SGPFDIA 243 (302)
Q Consensus 237 ~~~~~~~ 243 (302)
+||+.++
T Consensus 328 ~~~~~~~ 334 (350)
T 3aco_A 328 TDGVTLT 334 (350)
T ss_dssp -------
T ss_pred CCCeeee
Confidence 3444443
No 451
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.77 E-value=1.7e+02 Score=22.93 Aligned_cols=43 Identities=21% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 137 EQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 137 e~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~ 179 (302)
+.-.+-++++...|.+.++.-.++..++.+-+..+...+++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555666666666666555556666666666655554443
No 452
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.67 E-value=1.9e+02 Score=23.36 Aligned_cols=25 Identities=8% Similarity=0.318 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 148 QELQEKFSEKSRQKRKLDEMYDQLR 172 (302)
Q Consensus 148 ~ELq~ky~EKsRq~~qLqelYdkLK 172 (302)
..+...+.+.-+..+++-..|.+++
T Consensus 81 ~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 81 EDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 453
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=33.45 E-value=59 Score=21.05 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 022126 134 QMMEQEIESLSKD 146 (302)
Q Consensus 134 ~~me~E~e~LrKk 146 (302)
.++++|...|+.-
T Consensus 18 ~~Le~EV~RL~~l 30 (36)
T 1kd8_A 18 WHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 454
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=33.43 E-value=3.6e+02 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLD 165 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLq 165 (302)
+.+...+..+++|.+.+++...++..+-.|+.++.....
T Consensus 387 k~A~d~l~a~~kek~~~~n~~a~~~~KiAE~KrK~dE~~ 425 (602)
T 1cii_A 387 KHANDALNALLKEKENIRNQLSGINQKIAEEKRKQDELK 425 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhHHH
Confidence 334444556666777777777777777776666655443
No 455
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.35 E-value=13 Score=31.27 Aligned_cols=42 Identities=17% Similarity=0.471 Sum_probs=27.6
Q ss_pred ccccCccccc----CCcEEecCCccccHHHHHhhh-cCCCCCCCCcc
Q 022126 2 RCNACWRELE----GRAISTTCGHLLCTEDANKIL-SNDAACPICDQ 43 (302)
Q Consensus 2 ~CNiC~~~l~----~~~vvT~CGHiFC~~Ci~~~~-~~~~~CPvC~~ 43 (302)
.|.+|.++|. ...+-..|.|-+|..|....- .....|-+|.+
T Consensus 70 ~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 70 HCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp BCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred cchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 5899999864 235566799999999863211 12446777765
No 456
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.10 E-value=11 Score=28.33 Aligned_cols=28 Identities=14% Similarity=0.402 Sum_probs=15.8
Q ss_pred cccCccccc----CCcEEec-CCccccHHHHHh
Q 022126 3 CNACWRELE----GRAISTT-CGHLLCTEDANK 30 (302)
Q Consensus 3 CNiC~~~l~----~~~vvT~-CGHiFC~~Ci~~ 30 (302)
|+.|...+. ...|+-. |||.||..|-..
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~ 60 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQ 60 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSB
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCc
Confidence 666655432 1234443 888888777544
No 457
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=33.08 E-value=1.1e+02 Score=22.64 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 022126 132 RCQMMEQEIESLSK 145 (302)
Q Consensus 132 kl~~me~E~e~LrK 145 (302)
.+..++.++..++.
T Consensus 13 ~i~~lE~eL~~~r~ 26 (74)
T 2xv5_A 13 LLAEKEREMAEMRA 26 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 458
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=33.02 E-value=2.2e+02 Score=23.85 Aligned_cols=68 Identities=7% Similarity=0.248 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIES---------LSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~---------LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
+.+.|...+.+++.++++|.-....+.+|... .......++..|+. +..++.+--++|..+++++..-
T Consensus 30 l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~---ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 30 AEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAG---KRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcC
Confidence 45555556666666666554333333322220 00112334444432 3344455555666666666654
No 459
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=33.01 E-value=2.2e+02 Score=24.47 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 100 IVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 100 l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+.+..+..+|.-.-.+...-.+++..++++.+.=.--+.+....+++++.|.++|-.+
T Consensus 113 lvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~ 170 (185)
T 1ise_A 113 LTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKK 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444555555566666666543211112444555566666666666543
No 460
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=32.93 E-value=1.6e+02 Score=22.33 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=10.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRS 173 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~ 173 (302)
.+..+|...+.+-..+...+......|+.
T Consensus 71 ~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 71 LDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 461
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.92 E-value=37 Score=21.80 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=9.9
Q ss_pred CCCCCCCccccc
Q 022126 35 DAACPICDQVLS 46 (302)
Q Consensus 35 ~~~CPvC~~~l~ 46 (302)
...|++|++.+.
T Consensus 41 ~~~C~~C~k~F~ 52 (54)
T 2eps_A 41 PHKCQVWVSGPS 52 (54)
T ss_dssp CCCSSSSCCSSC
T ss_pred CccCCCCCCCCC
Confidence 568999999875
No 462
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=32.84 E-value=1.4e+02 Score=28.07 Aligned_cols=9 Identities=0% Similarity=-0.064 Sum_probs=5.0
Q ss_pred HhcCCChHH
Q 022126 65 AMAGVSPQI 73 (302)
Q Consensus 65 vL~GlsP~~ 73 (302)
++.++++..
T Consensus 171 ll~~~~~~~ 179 (426)
T 1lrz_A 171 IIKNMDGLR 179 (426)
T ss_dssp HHHTSCHHH
T ss_pred HHHhcCHHH
Confidence 456666653
No 463
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=32.81 E-value=47 Score=24.40 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022126 127 QKMAKRCQMMEQEIESLSK 145 (302)
Q Consensus 127 ~kl~~kl~~me~E~e~LrK 145 (302)
..|+.++..|+.+.+.|++
T Consensus 60 ~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444443
No 464
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=32.80 E-value=2.1e+02 Score=23.66 Aligned_cols=43 Identities=5% Similarity=0.167 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHH
Q 022126 117 EKLEQVHTAYQKMAKRCQMM----------EQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 117 ~ki~e~~s~~~kl~~kl~~m----------e~E~e~LrKkn~ELq~ky~EKsR 159 (302)
+++.++..+.+++++|-.++ ...+|++-.++-++..++.|-.+
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs~~sslD~vD~~Il~Ak~aL~evt~ 111 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATGAASTSDQVDSKIFALKSRMEKIHT 111 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 45566666677776653221 12345555555555555544443
No 465
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=32.69 E-value=33 Score=29.24 Aligned_cols=57 Identities=14% Similarity=0.392 Sum_probs=35.7
Q ss_pred ccccCcccccCCcEEe---cCCccccHHHHHhhhcC----------CCCCCCCccccccCCCcccccCCChHHHHHH
Q 022126 2 RCNACWRELEGRAIST---TCGHLLCTEDANKILSN----------DAACPICDQVLSKSLMKPVDINPNDEWVNMA 65 (302)
Q Consensus 2 ~CNiC~~~l~~~~vvT---~CGHiFC~~Ci~~~~~~----------~~~CPvC~~~l~~~div~~~LnPse~~Kt~v 65 (302)
.|-+|... +..+.- .|...||..||...+.. .-.|-+|.-.- ..-.|.+-.+|...+
T Consensus 81 yC~wC~~G--g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~-----l~~ll~~R~dw~~~l 150 (159)
T 3a1b_A 81 YCTICCGG--REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG-----TYGLLRRREDWPSRL 150 (159)
T ss_dssp SCTTTSCC--SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC-----EETTEEBCTTHHHHH
T ss_pred eeeEecCC--CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc-----HHHHhhhhhhHHHHH
Confidence 46666653 223332 48899999999987642 45799997532 222345667776654
No 466
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=32.54 E-value=1.4e+02 Score=24.63 Aligned_cols=43 Identities=7% Similarity=0.264 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQL 171 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkL 171 (302)
|+.++.++..-+..+.-+..+|..+......++..|..-.+.|
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 4444445555555555555555555544444444444334444
No 467
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=32.46 E-value=1.5e+02 Score=26.29 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 022126 162 RKLDEMYDQLRSEYESMKRSAIQP 185 (302)
Q Consensus 162 ~qLqelYdkLK~~~e~~~rsa~~~ 185 (302)
..+.+||+++|++ +|..|.+-
T Consensus 113 s~v~~L~ekvr~q---Lr~NA~d~ 133 (222)
T 2wrg_I 113 SNVRNLYEKVKSQ---LKNNAKEI 133 (222)
T ss_dssp HHHHHHHHHHHHH---HGGGEEEC
T ss_pred HHHHHHHHHHHHH---HHhhhHhh
Confidence 5678899999999 77776543
No 468
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=32.43 E-value=1.6e+02 Score=23.31 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 129 MAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 129 l~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
|+.++.+|..-+..|.-+..+|..+..
T Consensus 47 L~e~~keLh~~I~~LEeEKYDlE~kv~ 73 (106)
T 1j1d_B 47 LREKAKELWQTIYNLEAEKFDLQEKFK 73 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444444444444444444444444
No 469
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.40 E-value=2.1e+02 Score=25.40 Aligned_cols=9 Identities=11% Similarity=0.364 Sum_probs=3.9
Q ss_pred HhcCCChHH
Q 022126 65 AMAGVSPQI 73 (302)
Q Consensus 65 vL~GlsP~~ 73 (302)
+|+-+++..
T Consensus 58 ~L~~ld~~~ 66 (341)
T 3fpp_A 58 LLGVIDPEQ 66 (341)
T ss_dssp EEEEECCHH
T ss_pred EEEEEChHH
Confidence 344444443
No 470
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.40 E-value=25 Score=22.74 Aligned_cols=13 Identities=15% Similarity=0.810 Sum_probs=10.6
Q ss_pred CCCCCCCcccccc
Q 022126 35 DAACPICDQVLSK 47 (302)
Q Consensus 35 ~~~CPvC~~~l~~ 47 (302)
...|+.|++.+..
T Consensus 30 ~~~C~~C~~~f~~ 42 (60)
T 2adr_A 30 PYPCGLCNRAFTR 42 (60)
T ss_dssp SEECTTTCCEESS
T ss_pred CccCCCCCCccCC
Confidence 5679999998865
No 471
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=32.38 E-value=83 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=29.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 145 KDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 145 Kkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
+++.+|+++.++..++.++|.+.|.+--.++-.+--
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~ 39 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACY 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888999999999999999988887654433
No 472
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=32.29 E-value=2.4e+02 Score=24.25 Aligned_cols=127 Identities=10% Similarity=-0.038 Sum_probs=0.0
Q ss_pred CCCCCCCccccccCCCcccccCCChHHHHHHhcCCCh-HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 35 DAACPICDQVLSKSLMKPVDINPNDEWVNMAMAGVSP-QILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQE 113 (302)
Q Consensus 35 ~~~CPvC~~~l~~~div~~~LnPse~~Kt~vL~GlsP-~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~ 113 (302)
...||.-+.++..-.+-..--+-+......++. ++ +.+-..+..--.+...|...+.......-+.++..+++.+..
T Consensus 16 ~~~~~~~~~~~~~~~LP~~L~~LS~~eL~~LL~--~~~dlL~~~v~~l~~~q~~~~~~e~l~s~ae~ll~l~~~Le~~r~ 93 (192)
T 2p22_C 16 PGLPEKVNEKSKNIPLPEGINLLSSKEIIDLIQ--THRHQLELYVTKFNPLTDFAGKIHAFRDQFKQLEENFEDLHEQKD 93 (192)
T ss_dssp CCCC------CCCCCCSSGGGSCTTHHHHHHHH--HCHHHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCCCCCHHHHhCCHHHHHHHHh--ChHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEI------ESLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~------e~LrKkn~ELq~ky~EKsRq~~q 163 (302)
.+..++.++..-......|.++|..++ +.|..+.+....+-++.|..+.+
T Consensus 94 ~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 94 KVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=32.25 E-value=30 Score=22.00 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=0.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-----CCCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-----NDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-----~~~~CPvC~~~l~ 46 (302)
+.|++|.+.+.. ..-+..+.. ....|+.|++.+.
T Consensus 2 ~~C~~C~~~f~~------------~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKK------------PSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSS------------HHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCC------------HHHHHHHHHhcCCCCCccCCCCCchhc
No 474
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.23 E-value=42 Score=24.78 Aligned_cols=33 Identities=6% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQ 151 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq 151 (302)
|..+..+.+.++.++..+..+++.|+.++..|+
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 475
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=32.22 E-value=27 Score=32.79 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEK 153 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~k 153 (302)
+|+.+|..+++++..|+..+.+++.++++|+.++.+|..+
T Consensus 8 ~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~ 47 (319)
T 1fzc_C 8 KYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQ 47 (319)
T ss_dssp --CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=32.22 E-value=2e+02 Score=25.00 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 124 TAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSE 174 (302)
Q Consensus 124 s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~ 174 (302)
..+..++.++...+.-.+.|++|-..|...|.+--++..++++.++.+-.+
T Consensus 17 ~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~ 67 (217)
T 3aon_A 17 MELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQT 67 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 477
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.19 E-value=24 Score=23.99 Aligned_cols=34 Identities=15% Similarity=0.436 Sum_probs=0.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-----CCCCCCCCccccc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-----NDAACPICDQVLS 46 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-----~~~~CPvC~~~l~ 46 (302)
+.|.+|.+.+.. ..-+..+.. ....|+.|++.+.
T Consensus 18 ~~C~~C~k~f~~------------~~~l~~H~~~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 18 YKCDRCQASFRY------------KGNLASHKTVHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp BCCTTSSCCBSC------------HHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred eECCCCCceeCC------------HHHHHHHHHHcCCCCCEECCCCCchhC
No 478
>2ld3_A Myosin VI; molecular motor, lever arm extension, motor prote; NMR {Mus musculus}
Probab=38.37 E-value=9.6 Score=29.36 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKRS 181 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~rs 181 (302)
..+...+.+++.-..+|+..-.+|..+...+...++.+-.+.+-.-=--.++...|+.|..+.++.+.+
T Consensus 10 ~~L~~~l~~m~eia~~LK~~k~~~~kqV~~l~~~Ie~~I~kIK~~~itr~~Id~~y~~L~~~~~~~l~~ 78 (88)
T 2ld3_A 10 GTLKKRLDKFNEVVSALKDGKPEVNRQIKNLEISIDALMAKIKSTMMTREQIQKEYDALVKSSEDLLSA 78 (88)
No 479
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.09 E-value=36 Score=20.66 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=0.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-----CCCCCCCCc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-----NDAACPICD 42 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-----~~~~CPvC~ 42 (302)
+.|+.|.+.|.. ..-+..+.. ....||.|+
T Consensus 11 ~~C~~C~k~f~~------------~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 11 YSCPVCGLRFKR------------KDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SEETTTTEECSC------------HHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CcCCCCCcccCC------------HHHHHHHHHHccCCCCCCCcCCC
No 480
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.82 E-value=1.6e+02 Score=22.07 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 89 KELEMQYKMNRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 89 ~~qe~~yQ~~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+.+|.-..+|.=+...+.........+-.++.++..+..-++..+.+++.-...++.++.||.+.++
T Consensus 9 kevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 9 REVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=31.70 E-value=88 Score=20.23 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
+.+|..|+.++..+...|..++.-|++.+.+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
No 482
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=31.55 E-value=2.1e+02 Score=24.53 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 98 NRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 98 ~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
+.+.+..+..+|.-.-.+...-.+++..++++.+.=.--+.+....+++++.|.++|-.+--+..+-.|
T Consensus 111 kelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~KE 179 (185)
T 1is1_A 111 KDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKE 179 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=31.54 E-value=1.7e+02 Score=22.08 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 101 VAQCRQKCEAMQEKFT---EKLEQVHTAYQK-----MAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 101 ~~~lreK~e~L~~~l~---~ki~e~~s~~~k-----l~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
++.+.+.+...+..|+ .|+.+++.++.. -+..+..-+.+...++.|+.||+..+.|
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=31.51 E-value=2.1e+02 Score=24.53 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022126 98 NRIVAQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDE 166 (302)
Q Consensus 98 ~~l~~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqe 166 (302)
+.+.+..+..+|.-.-.+...-.+++..++++++.=.--+.+....+++++.|.++|-.+--+..+-.|
T Consensus 111 kelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~~~KE 179 (185)
T 1wqg_A 111 RELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKE 179 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=31.50 E-value=2.2e+02 Score=23.59 Aligned_cols=77 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESM 178 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~ 178 (302)
+.+.+..+.....+.+-+.-+.++++.=+.-++.++.-....+....|....++|-.++..++..+=.+|++.++.+
T Consensus 71 e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 71 ERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 486
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=31.41 E-value=3.6e+02 Score=26.56 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCccccc----CCChHHHHHHhcCCChHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 022126 49 LMKPVDI----NPNDEWVNMAMAGVSPQILMKSAYRSVMFYLGQKELEMQYKMNRIVAQCRQKCEAMQEKFTEK------ 118 (302)
Q Consensus 49 div~~~L----nPse~~Kt~vL~GlsP~~Ime~a~RAi~Fw~~Q~~qe~~yQ~~~l~~~lreK~e~L~~~l~~k------ 118 (302)
||.-+-- ||.....+..--|.+++.+- ..+..|..-.......+ .++.+-..+.+.+-+.
T Consensus 3 di~~ir~~~~~n~~~v~~~~~~R~~~~~~~~----~~~~ld~~~r~~~~~~~------~l~~~rn~~sk~i~~~k~~~~~ 72 (485)
T 3qne_A 3 DINAFLVEKGGDPEIIKASQKKRGDSVELVD----EIIAEYKEWVKLRFDLD------EHNKKLNSVQKEIGKRFKAKED 72 (485)
T ss_dssp CGGGGCGGGTCCHHHHHHHHHHHTCCSHHHH----HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHHhccCCCCHHHHHHHHHHcCCCHHHHH----HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcCccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 022126 119 LEQVHTAYQKMAKRCQMMEQEIESLSKDKQEL 150 (302)
Q Consensus 119 i~e~~s~~~kl~~kl~~me~E~e~LrKkn~EL 150 (302)
.+++-.+...++.++.+++.++..+..+.+++
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=31.32 E-value=1.3e+02 Score=25.94 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFS 155 (302)
Q Consensus 115 l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~ 155 (302)
+.+.|...+..+.++++++..++.++...+.++..+++.+.
T Consensus 126 ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 126 IRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.28 E-value=19 Score=25.89 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=0.0
Q ss_pred ccccCccccc-CCcEEecCCccccHHHHHhhhcCCCCCCCCccccccCCCcccc
Q 022126 2 RCNACWRELE-GRAISTTCGHLLCTEDANKILSNDAACPICDQVLSKSLMKPVD 54 (302)
Q Consensus 2 ~CNiC~~~l~-~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~l~~~div~~~ 54 (302)
.|..|.+.|. +..++..=|..|-..| +.|-.|++.|.....+..+
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~f~~~~ 62 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELFYEDRHFHEGC--------FRCCRCQRSLADEPFTCQD 62 (82)
T ss_dssp BCTTTCCBCCSSCCBCCCSSCCCBTTT--------SBCTTTCCBCSSCCEEEET
T ss_pred cCccCCCccccCcEEEEeCCccccccC--------CeecCCCCccCCCccEeeC
No 489
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.03 E-value=34 Score=21.24 Aligned_cols=31 Identities=10% Similarity=0.149 Sum_probs=0.0
Q ss_pred CccccCcccccCCcEEecCCccccHHHHHhhhc-----CCCCCCCCcc
Q 022126 1 MRCNACWRELEGRAISTTCGHLLCTEDANKILS-----NDAACPICDQ 43 (302)
Q Consensus 1 l~CNiC~~~l~~~~vvT~CGHiFC~~Ci~~~~~-----~~~~CPvC~~ 43 (302)
+.|++|.+.|.. ..-+..+.. ....|++|++
T Consensus 13 ~~C~~C~k~f~~------------~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 13 VACEICGKIFRD------------VYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp EEETTTTEEESS------------HHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred eeCCCCCcccCC------------HHHHHHHHHhcCCCCCccCCCCCC
No 490
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=31.01 E-value=2.5e+02 Score=24.01 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQ 170 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdk 170 (302)
|+.-+.-+-.-++.+=+-.+.+...++.|.+.|++-..|+-+..+.+--+..+|.+.+|.
T Consensus 7 le~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~ 66 (169)
T 3k29_A 7 LEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLDD 66 (169)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=30.98 E-value=2.1e+02 Score=24.14 Aligned_cols=75 Identities=11% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcCCCC
Q 022126 113 EKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYE--SMKRSAIQPSN 187 (302)
Q Consensus 113 ~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e--~~~rsa~~~a~ 187 (302)
.+++.++.-..+.|..-+.--..+..|-...-.+-+|+-+.|+.-..++.--+..|+.|..+++ +.|-+.++|.+
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L~P~~ 99 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSLDPAD 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcCCCCC
No 492
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=30.91 E-value=73 Score=29.84 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 022126 115 FTEKLEQVHTAYQKM-----AKRCQMMEQEIESLSKDKQELQEKFSEKSR 159 (302)
Q Consensus 115 l~~ki~e~~s~~~kl-----~~kl~~me~E~e~LrKkn~ELq~ky~EKsR 159 (302)
+.+.+++.+.+++.+ .+.|..|+..++.|+.|+..|..++.+...
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.91 E-value=1.8e+02 Score=22.31 Aligned_cols=62 Identities=10% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 022126 102 AQCRQKCEAMQEKFTEKLEQVHTAYQKMAKRCQ-------------MMEQEIESLSKDKQELQEKFSEKSRQKRK 163 (302)
Q Consensus 102 ~~lreK~e~L~~~l~~ki~e~~s~~~kl~~kl~-------------~me~E~e~LrKkn~ELq~ky~EKsRq~~q 163 (302)
..+++..+.+...++.....+...++.|..... .-......|.++..|+-..|.+-.-+|++
T Consensus 46 ~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre 120 (127)
T 1ez3_A 46 EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE 120 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.90 E-value=30 Score=28.50 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred CccccCccccc--CCcEEecCCccccHHHHHhhhcCCCCCCCCccc
Q 022126 1 MRCNACWRELE--GRAISTTCGHLLCTEDANKILSNDAACPICDQV 44 (302)
Q Consensus 1 l~CNiC~~~l~--~~~vvT~CGHiFC~~Ci~~~~~~~~~CPvC~~~ 44 (302)
|.|..|.+.|. +..++..=|+++|..|..+.+........++.+
T Consensus 94 F~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~~~~~~~~~~rp 139 (169)
T 2rgt_A 94 FACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQGGSGGSGGSGG 139 (169)
T ss_dssp CBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHHCC---------
T ss_pred CcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhhccCCCCCCcCC
No 495
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=30.75 E-value=25 Score=24.61 Aligned_cols=23 Identities=35% Similarity=0.723 Sum_probs=0.0
Q ss_pred CccccCccccc--CCcEEec---CCccc
Q 022126 1 MRCNACWRELE--GRAISTT---CGHLL 23 (302)
Q Consensus 1 l~CNiC~~~l~--~~~vvT~---CGHiF 23 (302)
+.|++|...|. ....+.. ||+.|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEE
No 496
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.57 E-value=1.9e+02 Score=22.88 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 022126 114 KFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSE 156 (302)
Q Consensus 114 ~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~E 156 (302)
.|.++..++|..|.++...--+++..+..-..+++||..+..|
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~d 88 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQ 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHH
No 497
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=30.48 E-value=1.9e+02 Score=28.57 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022126 111 MQEKFTEKLEQVHTAYQKMAKRCQMMEQEIESLSKDKQELQEKFSEKSRQKRKLDEMYDQLRSEYESMKR 180 (302)
Q Consensus 111 L~~~l~~ki~e~~s~~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq~~qLqelYdkLK~~~e~~~r 180 (302)
++..|-+.-..+...++.|+..++++++.-.....-+..|+..|....++...-+.+..+-++.+|.+++
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~ 151 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQL 151 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHH
No 498
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.44 E-value=68 Score=20.40 Aligned_cols=32 Identities=6% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
|.+|..|+.++-.+...|..++.-|++.+.++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll~~~ 33 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
No 499
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.40 E-value=93 Score=19.91 Aligned_cols=32 Identities=6% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 022126 126 YQKMAKRCQMMEQEIESLSKDKQELQEKFSEK 157 (302)
Q Consensus 126 ~~kl~~kl~~me~E~e~LrKkn~ELq~ky~EK 157 (302)
+.++..|+.++-.+...|..+..-|++.+-++
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg~r 34 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
No 500
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=30.31 E-value=1.8e+02 Score=26.46 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 022126 130 AKRCQMMEQEIESLSKDKQELQEKFSEKSRQ-KRKLDEMYDQLRSEYESMK 179 (302)
Q Consensus 130 ~~kl~~me~E~e~LrKkn~ELq~ky~EKsRq-~~qLqelYdkLK~~~e~~~ 179 (302)
...+..++.+++.++++++++.+.+.+-.++ ...|..+|+.|+.+.+...
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~ 275 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYK 275 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!