BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022127
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M4D|A Chain A, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|B Chain B, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|C Chain C, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|D Chain D, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|E Chain E, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|F Chain F, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4D|G Chain G, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
 pdb|3M4E|A Chain A, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|B Chain B, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|C Chain C, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|D Chain D, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|E Chain E, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|F Chain F, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
 pdb|3M4E|G Chain G, Crystal Structure Of The M113n Mutant Of Alpha-Hemolysin
           Bou Beta-Cyclodextrin
          Length = 293

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 102 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 142
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|3M3R|A Chain A, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|B Chain B, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|C Chain C, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|D Chain D, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|E Chain E, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|F Chain F, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
 pdb|3M3R|G Chain G, Crystal Structure Of The M113f Alpha-Hemolysin Mutant
           Comple Beta-Cyclodextrin
          Length = 293

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 102 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 142
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|3ANZ|A Chain A, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|B Chain B, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|C Chain C, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|D Chain D, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|E Chain E, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|F Chain F, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|G Chain G, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|H Chain H, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|I Chain I, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|J Chain J, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|K Chain K, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|L Chain L, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|M Chain M, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|N Chain N, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|O Chain O, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|P Chain P, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Q Chain Q, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|R Chain R, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|S Chain S, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|T Chain T, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|U Chain U, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|V Chain V, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|W Chain W, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|X Chain X, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Y Chain Y, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|Z Chain Z, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|AA Chain a, Crystal Structure Of Alpha-Hemolysin
 pdb|3ANZ|BB Chain b, Crystal Structure Of Alpha-Hemolysin
          Length = 302

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 102 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 142
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 152 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 197


>pdb|7AHL|A Chain A, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|B Chain B, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|C Chain C, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|D Chain D, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|E Chain E, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|F Chain F, Alpha-Hemolysin From Staphylococcus Aureus
 pdb|7AHL|G Chain G, Alpha-Hemolysin From Staphylococcus Aureus
          Length = 293

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 102 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 142
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 151 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 196


>pdb|3M2L|A Chain A, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|B Chain B, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|C Chain C, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|D Chain D, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|E Chain E, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|F Chain F, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
 pdb|3M2L|G Chain G, Crystal Structure Of The M113f Mutant Of Alpha-Hemolysin
          Length = 294

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 102 PSLRHLL----SKLPSWTVIIANITN-NWGYFVLLSWMPIYFNTVF 142
           P  + +L     K   W VI  N+ N NWG +   SW P+Y N +F
Sbjct: 152 PDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLF 197


>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
           From E.Coli
          Length = 451

 Score = 29.6 bits (65), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 42/221 (19%)

Query: 88  IQAGKSDSVKKRNPPSLRHLLSK-------LPS---WTVIIANITNNWGYFVLLSWMPIY 137
           I+  K+D     N  + + L +K       LP+   W + IAN+      + +L W P Y
Sbjct: 219 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 278

Query: 138 FNTVFNVNLKQAAW------FSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSI 191
              V +  L +++W      ++ +P GT+     + G  SD + +     T V       
Sbjct: 279 LKEVKHFALDKSSWAYFLYEYAGIP-GTL-----LCGWMSDKVFRGNRGATGV------- 325

Query: 192 GFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYL----LNIQEIAPD-----CA 242
            F    V++  + Y  +PA    +  I + +  F   G +    L+  E+AP       A
Sbjct: 326 -FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAA 384

Query: 243 GFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAG 283
           GF        G++AA  S I  GY V + G    F+ +  G
Sbjct: 385 GFTGLFGYLGGSVAA--SAI-VGYTVDFFGWDGGFMVMIGG 422


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,006,286
Number of Sequences: 62578
Number of extensions: 287694
Number of successful extensions: 806
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 7
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)