Query 022127
Match_columns 302
No_of_seqs 519 out of 1168
Neff 11.5
Searched_HMMs 29240
Date Mon Mar 25 14:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2E-30 6.8E-35 220.0 23.4 286 2-296 138-434 (451)
2 3o7q_A L-fucose-proton symport 100.0 3.2E-27 1.1E-31 199.6 24.1 268 2-294 136-431 (438)
3 2gfp_A EMRD, multidrug resista 99.9 1.9E-26 6.6E-31 190.9 9.1 255 2-282 107-363 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.1E-24 3.7E-29 186.8 18.6 290 2-297 127-473 (491)
5 2cfq_A Lactose permease; trans 99.9 6.2E-24 2.1E-28 178.3 15.0 274 6-299 123-403 (417)
6 4gc0_A D-xylose-proton symport 99.9 1.7E-21 5.9E-26 166.9 15.6 288 2-300 145-467 (491)
7 2xut_A Proton/peptide symporte 99.8 1E-18 3.6E-23 150.8 15.6 289 2-296 128-503 (524)
8 4aps_A DI-OR tripeptide H+ sym 99.7 3.3E-15 1.1E-19 127.9 20.2 175 111-295 13-196 (491)
9 3o7q_A L-fucose-proton symport 99.6 1.8E-14 6.3E-19 121.4 19.9 173 113-295 28-229 (438)
10 2xut_A Proton/peptide symporte 99.6 1.2E-14 4E-19 125.5 18.1 175 110-294 11-197 (524)
11 1pw4_A Glycerol-3-phosphate tr 99.6 2.6E-15 8.9E-20 127.0 13.4 176 111-297 28-208 (451)
12 2gfp_A EMRD, multidrug resista 99.6 6.7E-15 2.3E-19 121.6 14.5 169 115-294 4-173 (375)
13 2cfq_A Lactose permease; trans 99.3 3E-13 1E-17 113.3 2.4 173 106-289 2-181 (417)
14 4gc0_A D-xylose-proton symport 99.0 1.1E-08 3.8E-13 87.3 17.1 135 146-289 54-214 (491)
15 2dw3_A Intrinsic membrane prot 59.2 23 0.00079 20.9 4.4 33 47-79 31-63 (77)
16 2nrg_A Intrinsic membrane prot 43.5 51 0.0017 19.7 4.6 32 47-78 32-63 (82)
17 2l2t_A Receptor tyrosine-prote 24.0 73 0.0025 16.6 2.5 10 289-298 28-37 (44)
18 2ks1_B Epidermal growth factor 22.3 82 0.0028 16.4 2.5 12 287-298 27-38 (44)
19 1ldf_A Glycerol uptake facilit 22.0 78 0.0027 24.4 3.5 23 48-70 232-254 (281)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.97 E-value=2e-30 Score=219.98 Aligned_cols=286 Identities=15% Similarity=0.190 Sum_probs=215.9
Q ss_pred chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 022127 2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIG-ISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFV 80 (302)
Q Consensus 2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-wr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 80 (302)
|+..+++.|++|+++|++++++.+.+.++|.+++|.+++++.+..| ||+.|++.+++.++..++.++.+||+|++.+..
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP 217 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC
Confidence 5678899999999999999999999999999999999999989998 999999999988887777777788877654322
Q ss_pred ChHHHHH--HHhcCcccccCCCCc--chHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHH
Q 022127 81 SKSELRL--IQAGKSDSVKKRNPP--SLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVP 156 (302)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 156 (302)
++++.+. .++..++++++.... ..++.+++|.++...+..++..........++|.|+++.+|.++.+.+...+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 297 (451)
T 1pw4_A 218 PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297 (451)
T ss_dssp SCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHH
T ss_pred ChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 1111000 000000001111111 257788999999999999999999999999999999998999999999999999
Q ss_pred HHHHHhhhhhhhcccchh--hccCCchhHHHHHHHHHhhhhhHHHHHHhhccc--chHHHHHHHHHHHHHhhhhhhhhhh
Q 022127 157 WGTMAVSGYMAGKASDSL--IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAK--SPAVAAVLITIALSLSSFSQAGYLL 232 (302)
Q Consensus 157 ~~~~~~~~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (302)
.++.+++.++.|++.||+ ++| +.+.....+...+++..+...+ +.+.......+.+.+.+...+....
T Consensus 298 ~~~~~~~~~~~g~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 369 (451)
T 1pw4_A 298 EYAGIPGTLLCGWMSDKVFRGNR--------GATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 369 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCH--------HHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc--------hhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence 999999999999999998 764 2222223232224444444442 4444444444455555555666677
Q ss_pred HHhhhcc-chhhhHHHHHHHHHHH-HHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhc
Q 022127 233 NIQEIAP-DCAGFLHGIANSAGTL-AAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYS 296 (302)
Q Consensus 233 ~~~~~~p-~~~~~~~g~~~~~~~~-g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (302)
...|..| ++|+++.|+.+...++ |..++|.+.|.+.|..| ++..|++.+++.+++.++.+...
T Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 7799999999999999 99999999999999987 89999998888888777665543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.96 E-value=3.2e-27 Score=199.58 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=201.8
Q ss_pred chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHH-hhcC-------------------------CchHHHHH
Q 022127 2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIML-STIG-------------------------ISGPFILF 55 (302)
Q Consensus 2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~g-------------------------wr~~f~~~ 55 (302)
|+..+++.|++|+|+|++++++.+.+.++|..+++.+++.+. +..+ ||+.|++.
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 567889999999999999999999999999999999999998 5554 99999887
Q ss_pred HHHHHHHHHHHHhh-hcCCCCCCCCCChHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhh
Q 022127 56 SSLGLLWLSTWTSK-VTNDPCNSPFVSKSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWM 134 (302)
Q Consensus 56 ~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (302)
+.+.++..++.++. .||+++++++. +++++.+.++++++|+|+++...+..++..........+.
T Consensus 216 ~~~~~~~~~~~~~~~~p~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKFPALQSDNHSD--------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281 (438)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTCCCC--------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccccccccc--------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776655544432 23322211110 0111122357889999999999999998888888999999
Q ss_pred hHH-HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHH
Q 022127 135 PIY-FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAA 213 (302)
Q Consensus 135 ~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (302)
|.| +++.+|.++.+.+...+...++..++.++.|++.||+++|+ . ...+.++..+........++.....
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--------V-LAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH--------H-HHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--------H-HHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 999 88878999999999999999999999999999999998652 2 2344445555555555555544333
Q ss_pred HHHHHHHHHhhhhhhhhhhHHhhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH
Q 022127 214 VLITIALSLSSFSQAGYLLNIQEIAPDCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWN 293 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 293 (302)
. ..+.+++.+...+.......|..|++++++.++.. ...+++.++|.+.|.+.|..|+++..|.+.+++.++..+..+
T Consensus 353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 353 A-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp H-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3 34445556666777788877878866888888877 678999999999999999987788888877666555544433
Q ss_pred h
Q 022127 294 L 294 (302)
Q Consensus 294 ~ 294 (302)
.
T Consensus 431 ~ 431 (438)
T 3o7q_A 431 F 431 (438)
T ss_dssp T
T ss_pred H
Confidence 3
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=1.9e-26 Score=190.94 Aligned_cols=255 Identities=10% Similarity=0.003 Sum_probs=195.0
Q ss_pred chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 022127 2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVS 81 (302)
Q Consensus 2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 81 (302)
|...+++.|++|+|+|++++++.+.+.++|..++|.+++++.++.|||+.|++.+++.++..+...+.+||+++++++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR- 185 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-
Confidence 5677899999999999999999999999999999999999999899999999988877776654555566655432111
Q ss_pred hHHHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHH
Q 022127 82 KSELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMA 161 (302)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 161 (302)
++.+.++++.+|+|+++...+..++..........+.|.|+++.+|.|+.+.+...+...++..
T Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~ 249 (375)
T 2gfp_A 186 ----------------TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAF 249 (375)
T ss_dssp ----------------CCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ----------------ccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 1123356788999999999999999888999999999999999899999999999999999999
Q ss_pred hhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhc--ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc
Q 022127 162 VSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNY--AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP 239 (302)
Q Consensus 162 ~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 239 (302)
++.++.+++.||.+++ .................... .++.+.......+.+++.+...+.......|..|
T Consensus 250 ~~~~~~~~l~~r~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p 321 (375)
T 2gfp_A 250 FGAWFAGRPNKRFSTL--------MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP 321 (375)
T ss_dssp HHHHHHHTTTTHHHHH--------HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 9999999999999752 11101110111111111111 1233444444555556667777888888889888
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHH
Q 022127 240 DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTA 282 (302)
Q Consensus 240 ~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~ 282 (302)
++|+++.|+.+...++|..++|.+.|.+.+..+ +...+...+
T Consensus 322 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~-~~~~~~~~~ 363 (375)
T 2gfp_A 322 FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ-GSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-HHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHH
Confidence 999999999999999999999999999987654 766666543
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.93 E-value=1.1e-24 Score=186.80 Aligned_cols=290 Identities=13% Similarity=0.052 Sum_probs=189.1
Q ss_pred chhhhhhhcccCccc--hhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCC--
Q 022127 2 PAMSTLTSRWFPSHE--RASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNS-- 77 (302)
Q Consensus 2 p~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~-- 77 (302)
|+..++++|++|+++ |++++++.+.+.++|..++|.+++.+.++.|||+.|++.++..++..+...+..++..+++
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYL 206 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCS
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 567889999999988 7788898999999999999999999999999999999987766665554444333322111
Q ss_pred --C-CCChHHHHHHHhc--------------------Ccccc--------------------cCCCCcchHHhhcCccHH
Q 022127 78 --P-FVSKSELRLIQAG--------------------KSDSV--------------------KKRNPPSLRHLLSKLPSW 114 (302)
Q Consensus 78 --~-~~~~~~~~~~~~~--------------------~~~~~--------------------~~~~~~~~~~~~~~~~~~ 114 (302)
+ ..++++.+...+. .+.++ .++.+....+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (491)
T 4aps_A 207 RPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYI 286 (491)
T ss_dssp CCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 1 1111221111000 00000 000011111111223345
Q ss_pred HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI 194 (302)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 194 (302)
...+..+...........++|.|.++..+.+..+.+.......+...++.++.+++.||++||+... ...+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~----~~~~~~~~~ 362 (491)
T 4aps_A 287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS----PTKFAVGLM 362 (491)
T ss_dssp HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc----hHHHHHHHH
Confidence 5555555555566666788889999878888778888899999999999999999999999886432 111223444
Q ss_pred hhHHHHHHhhcc---------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHh
Q 022127 195 GPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGT 264 (302)
Q Consensus 195 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~ 264 (302)
+..++...+... .+.+.......+.+.+.+...+..+....|..| ++|+++.|+.+...++|..++|.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~ 442 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV 442 (491)
T ss_dssp HHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333321 134444455555556666667777888889888 7799999999999999999999999
Q ss_pred hhhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127 265 GYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297 (302)
Q Consensus 265 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
+.+.+. + +...+...+++.+++.++.+++.+
T Consensus 443 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 443 TLYNAK-S-EVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp GGGGGS-S-TTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHhcc-c-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998775 3 667777777777776666555443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=6.2e-24 Score=178.28 Aligned_cols=274 Identities=14% Similarity=0.077 Sum_probs=180.5
Q ss_pred hhhhcccCc--cchhhHHHHHhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCChH
Q 022127 6 TLTSRWFPS--HERASAIGICMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSPFVSKS 83 (302)
Q Consensus 6 ~~i~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 83 (302)
..+.++.++ ++|+...+.......+|..++|.+++++.+ .+||+.|++.++..++..+.. +..+|+++++.+ ++
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~ 198 (417)
T 2cfq_A 123 PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLL-FFAKTDAPSSAT--VA 198 (417)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHS-CSSCCCCSCSSC--SS
T ss_pred HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHH-HHcCcccccccc--cc
Confidence 344455543 456777888888999999999999999886 589999998776654443333 333333321110 00
Q ss_pred HHHHHHhcCcccccCCCCcchHHhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhcc---chhhhhHHhhHHHHHH
Q 022127 84 ELRLIQAGKSDSVKKRNPPSLRHLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNV---NLKQAAWFSAVPWGTM 160 (302)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---s~~~~~~~~~~~~~~~ 160 (302)
++ .++++++....++++++|+|+++...+..+.....+.....++|.|+++.++. +....+...+...++.
T Consensus 199 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 272 (417)
T 2cfq_A 199 NA------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLN 272 (417)
T ss_dssp SS------SSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHH
T ss_pred cc------cccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence 00 00001111122456788999988777665555555556667789888775542 3445577777777888
Q ss_pred HhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-
Q 022127 161 AVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP- 239 (302)
Q Consensus 161 ~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 239 (302)
.++.+..|+++||+++|+ .+ ..+..+..+........++.+.......+.....+...+.......|..|
T Consensus 273 ~~~~~~~g~l~dr~g~~~--------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~ 343 (417)
T 2cfq_A 273 ASIMFFAPLIINRIGGKN--------AL-LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHHHHHHHHCHHH--------HH-HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHhcHHH--------HH-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 899999999999998752 22 24444444545455545554444333333333344444555677888888
Q ss_pred chhhhHHHHH-HHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhhccCc
Q 022127 240 DCAGFLHGIA-NSAGTLAAIISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLYSTGE 299 (302)
Q Consensus 240 ~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (302)
+.|+++.+.. +...++|+.++|.+.|.+.|..| +...|.+.+++.+++.++.+...+++
T Consensus 344 ~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 8899999994 88888999999999999999876 88889888888888777665555443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=1.7e-21 Score=166.86 Aligned_cols=288 Identities=13% Similarity=0.048 Sum_probs=177.5
Q ss_pred chhhhhhhcccCccchhhHHHHHhhhhhhHHHHHHHHHHHHHhh--------cCCchHHHHHHHHHHHHHHHHHhhhcCC
Q 022127 2 PAMSTLTSRWFPSHERASAIGICMGGFHLGNVVGLLLTPIMLST--------IGISGPFILFSSLGLLWLSTWTSKVTND 73 (302)
Q Consensus 2 p~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~--------~gwr~~f~~~~~~~~~~~~~~~~~~~~~ 73 (302)
|...++++|+.|+++|++..++.+.+..+|..+++.++..+... .+||+.+.+..+..++. +...+..||+
T Consensus 145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~peS 223 (491)
T 4gc0_A 145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF-LMLLYTVPES 223 (491)
T ss_dssp HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH-HHHGGGSCCC
T ss_pred HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh-hhhhhcCCCC
Confidence 56778999999999999999999999999999999988877643 34677666655554443 4455568888
Q ss_pred CCCC--CCCChHHHHHHHhcCc------------c-cccCCCCcchHHhhcCccHHHHHHHH-HhhhHHHHHHHhhhhHH
Q 022127 74 PCNS--PFVSKSELRLIQAGKS------------D-SVKKRNPPSLRHLLSKLPSWTVIIAN-ITNNWGYFVLLSWMPIY 137 (302)
Q Consensus 74 p~~~--~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 137 (302)
|+.. +...++.++..++... + .+++++.......++.++........ +......+....+.|.+
T Consensus 224 p~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 224 PRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 8621 1111111111100000 0 00001111222334444444333333 33344445555666666
Q ss_pred HHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh---c-ccchHHHH
Q 022127 138 FNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN---Y-AKSPAVAA 213 (302)
Q Consensus 138 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 213 (302)
.++ .+.+..+........++...++.++.+++.||+|||+.. ..+.....++++.+. . ..+.....
T Consensus 304 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 304 FKT-LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ---------IIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHH-SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH---------HHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHh-cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh---------ccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 665 777777777777888899999999999999999987422 122222222222211 1 22222223
Q ss_pred HHHHHHHHHhhh-hhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-----chhHHHHHHHHHHH
Q 022127 214 VLITIALSLSSF-SQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-----SFQAFLTVTAGLYF 286 (302)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-----~~~~~~~~~~~~~~ 286 (302)
....+....... ..+..+.+..|++| +.|+++.|+.+..+++++.+++.+.+.+.+... .....|++.+++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 374 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 333333332233 23455788899999 889999999999999999999988887754321 14456788888888
Q ss_pred HHHHHHHhhccCcc
Q 022127 287 VTTIFWNLYSTGER 300 (302)
Q Consensus 287 ~~~~~~~~~~~~~~ 300 (302)
++.++.+++.+|+|
T Consensus 454 ~~~i~~~~~~PETk 467 (491)
T 4gc0_A 454 LAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHCCCCT
T ss_pred HHHHHHHheecCCC
Confidence 88877777766654
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.80 E-value=1e-18 Score=150.81 Aligned_cols=289 Identities=11% Similarity=-0.009 Sum_probs=154.6
Q ss_pred chhhhhhhcccCccchhhHHHH---HhhhhhhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 022127 2 PAMSTLTSRWFPSHERASAIGI---CMGGFHLGNVVGLLLTPIMLSTIGISGPFILFSSLGLLWLSTWTSKVTNDPCNSP 78 (302)
Q Consensus 2 p~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 78 (302)
|+..+++.|++|+++|+++.+. .+.+.++|..++|.+++.+.+..|||+.|++.+++.++..+...+..++.+++++
T Consensus 128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (524)
T 2xut_A 128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPP 207 (524)
T ss_dssp HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-
T ss_pred hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 5678899999999999876666 9999999999999999999999999999999888766655444332222211111
Q ss_pred CCCh--HHHHHH----HhcCcc-cc-------------------------------------cCCCCcchH---------
Q 022127 79 FVSK--SELRLI----QAGKSD-SV-------------------------------------KKRNPPSLR--------- 105 (302)
Q Consensus 79 ~~~~--~~~~~~----~~~~~~-~~-------------------------------------~~~~~~~~~--------- 105 (302)
+.++ +..+.. ++...+ ++ +++.+.+++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (524)
T 2xut_A 208 EPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSH 287 (524)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSC
T ss_pred CCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccc
Confidence 0000 000000 000000 00 000000110
Q ss_pred ---HhhcCccHHHHHHHHHhhhHHHHH-HHhhhhHHHHHhhccch---hhhhHHhhHHHHHHHhhhhhhhccc----chh
Q 022127 106 ---HLLSKLPSWTVIIANITNNWGYFV-LLSWMPIYFNTVFNVNL---KQAAWFSAVPWGTMAVSGYMAGKAS----DSL 174 (302)
Q Consensus 106 ---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~----dr~ 174 (302)
+..+.++.+....... .....+. ...+.+.+.....+.+. ...+.......++..++.++.+++. ||.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (524)
T 2xut_A 288 PDAAVDGVRSVLRILVLFA-LVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERM 366 (524)
T ss_dssp CSSSSTTTTTHHHHHHHHT-TSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred cHhHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence 0011223322222222 2222221 11222233222222222 1355555555556666666666664 333
Q ss_pred hccCCchhHHHHHHHHHhhhhhHHHHHHhhcc---------cchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhh
Q 022127 175 IKAGYSLTLVRKIMQSIGFIGPGVSLLCLNYA---------KSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGF 244 (302)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 244 (302)
++|... +.....+..+.+++++.+... .+.+.......+.+.+.+...+..+....|..| ++||+
T Consensus 367 ~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 367 GVKLTA-----LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp ----CC-----HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred CCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 322111 112234555555555544432 234444445555556666667777888888888 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcccc-ch---------hHHHHHHHHHHHHHHHHHHhhc
Q 022127 245 LHGIANSAGTLAAIISTIGTGYFVQWLG-SF---------QAFLTVTAGLYFVTTIFWNLYS 296 (302)
Q Consensus 245 ~~g~~~~~~~~g~~i~~~i~g~l~~~~g-~~---------~~~~~~~~~~~~~~~~~~~~~~ 296 (302)
++|+.+...++|+.++|.+.|.+.+..+ +| ...|.+.+++.+++.++.+++.
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987431 01 2336666666666666554443
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.69 E-value=3.3e-15 Score=127.90 Aligned_cols=175 Identities=13% Similarity=0.093 Sum_probs=145.9
Q ss_pred ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHh-----hccchhhhhHHhhHHHHHHHhhhhhhhcccch-hhccCCchhHH
Q 022127 111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTV-----FNVNLKQAAWFSAVPWGTMAVSGYMAGKASDS-LIKAGYSLTLV 184 (302)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~~~~~~ 184 (302)
+.++...+..++....++....+++.|+++. +|.|..+.++..+...++..++.++.|+++|| +|||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 4567777888888888899999999999998 89999999999999999999999999999999 89652
Q ss_pred HHHHHHHhhhhhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-ch--hhhHHHHHHHHHHHHHHHHH
Q 022127 185 RKIMQSIGFIGPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DC--AGFLHGIANSAGTLAAIIST 261 (302)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~--~~~~~g~~~~~~~~g~~i~~ 261 (302)
.+..+.++..++.......++.+...+...+.+.+.+...+...+.+.|..| ++ |+.+.+..+...++|..++|
T Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 87 ---AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 3346666666677777777777777777777777777788888899999887 66 77888889999999999999
Q ss_pred HHhhhhhccccchhHHHHHHHHHHHHHHHHHHhh
Q 022127 262 IGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNLY 295 (302)
Q Consensus 262 ~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 295 (302)
.+.+.+.++.| |+..|++.++..+++.+.....
T Consensus 164 ~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 164 LIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999876 9999999887777766655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.65 E-value=1.8e-14 Score=121.35 Aligned_cols=173 Identities=10% Similarity=0.002 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHh
Q 022127 113 SWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIG 192 (302)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 192 (302)
+....+..+.............|.+.++ +|.|..+.+++.+...++..++.++.|+++||+|||+ ....+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~---------~l~~~ 97 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQA-FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA---------GIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH---------HHHHH
Confidence 3444455555555556666777775555 9999999999999999999999999999999999753 22355
Q ss_pred hhhhHHHHHHh---hcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 022127 193 FIGPGVSLLCL---NYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFV 268 (302)
Q Consensus 193 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~ 268 (302)
.++..++.+.. ...++.+...+...+.+.+.+...+.......|..| ++|+++.++.+...++|..++|.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556665555 566777777777777778888888888999999888 88999999999999999999999999998
Q ss_pred -ccccc------------------------hhHHHHHHHHHHHHHHHHHHhh
Q 022127 269 -QWLGS------------------------FQAFLTVTAGLYFVTTIFWNLY 295 (302)
Q Consensus 269 -~~~g~------------------------~~~~~~~~~~~~~~~~~~~~~~ 295 (302)
+..+. |+..|.+.++..++..++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 178 LSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65554 8888887777666655555444
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.64 E-value=1.2e-14 Score=125.47 Aligned_cols=175 Identities=10% Similarity=-0.030 Sum_probs=140.2
Q ss_pred CccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhc------cchhhhhHHhhHHHHHHHhhhhhhhcccchh-hccCCchh
Q 022127 110 KLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFN------VNLKQAAWFSAVPWGTMAVSGYMAGKASDSL-IKAGYSLT 182 (302)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~~~~ 182 (302)
+|.++...+..++.....+....++|.|+++.+| .|+.+.+++.+...++..++.++.|+++||+ |+|+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~--- 87 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT--- 87 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH---
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH---
Confidence 3567778888888888888999999999998889 9999999999999999999999999999999 97632
Q ss_pred HHHHHHHHHhhhhhHHHHHHhhccc-chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHH---HHHHHHHHH
Q 022127 183 LVRKIMQSIGFIGPGVSLLCLNYAK-SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGI---ANSAGTLAA 257 (302)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~---~~~~~~~g~ 257 (302)
+ ..+.++..++.+.....+ +.+.......+.+.+.+...+...+...|..| ++|++..+. .+...++|.
T Consensus 88 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 88 -----I-LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp -----H-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred -----H-HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 2 345555556666666666 66666666667777777778888889999887 778766555 889999999
Q ss_pred HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHh
Q 022127 258 IISTIGTGYFVQWLGSFQAFLTVTAGLYFVTTIFWNL 294 (302)
Q Consensus 258 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (302)
.++|.+.+.+.+..| |+..|.+.++..+++.+....
T Consensus 162 ~~g~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASLSMPLLLKNFG-AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTSTHHHHTSC-HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776 999999888877776655543
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.63 E-value=2.6e-15 Score=127.01 Aligned_cols=176 Identities=13% Similarity=0.036 Sum_probs=139.2
Q ss_pred ccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHH
Q 022127 111 LPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQS 190 (302)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~ 190 (302)
+.++...+..+............+|.+.++ + .+..+.+++.+...++..++.++.|+++||+|||+ .+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~---------~l~ 96 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV---------FLP 96 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH---------HHH
Confidence 445555566666666666667778877777 6 89999999999999999999999999999999752 334
Q ss_pred HhhhhhHHHHHHhhc----ccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhh
Q 022127 191 IGFIGPGVSLLCLNY----AKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTG 265 (302)
Q Consensus 191 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g 265 (302)
.+.++..++.+.... .++.+...+...+.+.+.+...+...+.+.|..| ++|+++.|+.+....+|..++|.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 97 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666 6677777777777777788888888899999888 88999999999999999999999999
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHhhcc
Q 022127 266 YFVQWLGSFQAFLTVTAGLYFVTTIFWNLYST 297 (302)
Q Consensus 266 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
.+.+..|+|+..|++.+++.++..++..+..+
T Consensus 177 ~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 177 LGMAWFNDWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 98877655999999888877766655544433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=6.7e-15 Score=121.58 Aligned_cols=169 Identities=11% Similarity=-0.013 Sum_probs=133.8
Q ss_pred HHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhh
Q 022127 115 TVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFI 194 (302)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~ 194 (302)
.+.+..+............+|.+.++ +|.|+.+.++..+...++..++.+..|+++||+|||+... .+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~---------~~~~ 73 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL---------VGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH---------HHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH---------HHHH
Confidence 44555666666666677778877666 8999999999999999999999999999999999987653 4444
Q ss_pred hhHHHHHHhhcccchHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 022127 195 GPGVSLLCLNYAKSPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLGS 273 (302)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g~ 273 (302)
...++.......++.+.......+.+.+.+...+.......|..| ++|+++.+..+....+|..++|.+.+.+.+..|
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 152 (375)
T 2gfp_A 74 IFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-
Confidence 555555555555666666666666777777777888888899887 889999999999999999999999999998776
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 022127 274 FQAFLTVTAGLYFVTTIFWNL 294 (302)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~ 294 (302)
|+..+.+.++..++..+....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~ 173 (375)
T 2gfp_A 153 WRACYLFLLVLCAGVTFSMAR 173 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999888777766653333
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.33 E-value=3e-13 Score=113.28 Aligned_cols=173 Identities=13% Similarity=0.056 Sum_probs=112.3
Q ss_pred HhhcCccHHHHHHHHHhhhHHHHHHHhhhhHHHHHhhccchhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHH
Q 022127 106 HLLSKLPSWTVIIANITNNWGYFVLLSWMPIYFNTVFNVNLKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVR 185 (302)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~ 185 (302)
+.+|||+++......+...........++|.|+++.+|.|+.+.+.+.+...++..+++++.|+++||+|||+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~---- 77 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL---- 77 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHH----
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH----
Confidence 3678999998888888888787788899999999889999999999999999999999999999999999985431
Q ss_pred HHHHHHhhhhhHH---HHHHhhcccchH-HHHHHHHHHHHHhhhhhhhhhhHHhhhcc---chhhhHHHHHHHHHHHHHH
Q 022127 186 KIMQSIGFIGPGV---SLLCLNYAKSPA-VAAVLITIALSLSSFSQAGYLLNIQEIAP---DCAGFLHGIANSAGTLAAI 258 (302)
Q Consensus 186 ~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~~g~~~~~~~~g~~ 258 (302)
.+.....+ ........+... .......+.....+...+.......+..+ ++++...|..+....+|..
T Consensus 78 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 78 -----WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp -----HHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH
Confidence 11111111 111111111000 00111111111122222222333333332 3456677788778899999
Q ss_pred HHHHHhhhhhccccchhHHHHHHHHHHHHHH
Q 022127 259 ISTIGTGYFVQWLGSFQAFLTVTAGLYFVTT 289 (302)
Q Consensus 259 i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~ 289 (302)
++|.+.+++.+. + ++..|++.++..++..
T Consensus 153 ~~~~l~~~l~~~-~-~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 153 LGASIVGIMFTI-N-NQFVFWLGSGCALILA 181 (417)
T ss_dssp HHHHHHHHHHHH-C-SHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHh-c-hhHHHHHHHHHHHHHH
Confidence 999999999874 4 7888876655544333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=1.1e-08 Score=87.30 Aligned_cols=135 Identities=11% Similarity=-0.008 Sum_probs=96.7
Q ss_pred hhhhhHHhhHHHHHHHhhhhhhhcccchhhccCCchhHHHHHHHHHhhhhhHHHHHHhh------------------ccc
Q 022127 146 LKQAAWFSAVPWGTMAVSGYMAGKASDSLIKAGYSLTLVRKIMQSIGFIGPGVSLLCLN------------------YAK 207 (302)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 207 (302)
..+.+++.+...++..+|+++.|+++||+|||+. +.++.++..++.+... ..+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~---------l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~ 124 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS---------LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAG 124 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH---------HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH---------HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhh
Confidence 3456778888899999999999999999997632 2344444444433332 345
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhhhHHhhhcc-chhhhHHHHHHHHHHHHHHHHHHHhhhhhcccc-------chhHHHH
Q 022127 208 SPAVAAVLITIALSLSSFSQAGYLLNIQEIAP-DCAGFLHGIANSAGTLAAIISTIGTGYFVQWLG-------SFQAFLT 279 (302)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~g-------~~~~~~~ 279 (302)
+....++.-.+.+.+.+...+....++.|..| ++|+...+..+.....|..+++.+.....+..+ .|+..+.
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 66777777788888888888888999999988 889999999999999998888887776654321 2444554
Q ss_pred HHHHHHHHHH
Q 022127 280 VTAGLYFVTT 289 (302)
Q Consensus 280 ~~~~~~~~~~ 289 (302)
+.....++..
T Consensus 205 ~~~~~~~~~~ 214 (491)
T 4gc0_A 205 SECIPALLFL 214 (491)
T ss_dssp TTHHHHHHHH
T ss_pred hhhhhhhhhh
Confidence 4444444433
No 15
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=59.16 E-value=23 Score=20.88 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 022127 47 GISGPFILFSSLGLLWLSTWTSKVTNDPCNSPF 79 (302)
Q Consensus 47 gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~ 79 (302)
||-.++.+...+.++..-.+-..+||+.++.+.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~ 63 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 344444443333333333444567887665543
No 16
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=43.50 E-value=51 Score=19.66 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=16.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 022127 47 GISGPFILFSSLGLLWLSTWTSKVTNDPCNSP 78 (302)
Q Consensus 47 gwr~~f~~~~~~~~~~~~~~~~~~~~~p~~~~ 78 (302)
||-..+.+...+.++..-.+-..+||+.++.+
T Consensus 32 G~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~aP 63 (82)
T 2nrg_A 32 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 63 (82)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHSSTTTTTCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 45555555444444434344456787765544
No 17
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.04 E-value=73 Score=16.56 Aligned_cols=10 Identities=10% Similarity=-0.107 Sum_probs=4.2
Q ss_pred HHHHHhhccC
Q 022127 289 TIFWNLYSTG 298 (302)
Q Consensus 289 ~~~~~~~~~~ 298 (302)
...+++++++
T Consensus 28 ~~~~~~~RRR 37 (44)
T 2l2t_A 28 LTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 18
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=22.31 E-value=82 Score=16.37 Aligned_cols=12 Identities=8% Similarity=-0.202 Sum_probs=5.0
Q ss_pred HHHHHHHhhccC
Q 022127 287 VTTIFWNLYSTG 298 (302)
Q Consensus 287 ~~~~~~~~~~~~ 298 (302)
+....+++++++
T Consensus 27 i~~~~~~~~RRr 38 (44)
T 2ks1_B 27 VALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhhhh
Confidence 333334444443
No 19
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=21.99 E-value=78 Score=24.39 Aligned_cols=23 Identities=9% Similarity=-0.201 Sum_probs=14.5
Q ss_pred CchHHHHHHHHHHHHHHHHHhhh
Q 022127 48 ISGPFILFSSLGLLWLSTWTSKV 70 (302)
Q Consensus 48 wr~~f~~~~~~~~~~~~~~~~~~ 70 (302)
|.|++++.-+++.+...+.+..+
T Consensus 232 ~~WVy~vgPi~Ga~la~~~y~~l 254 (281)
T 1ldf_A 232 YFLVPLFGPIVGAIVGAFAYRKL 254 (281)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHhHHHHHHHHHHHHHHHHH
Confidence 57888886666666555554433
Done!