BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022128
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48721|HEM4_ARATH Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis
thaliana GN=UROS PE=2 SV=2
Length = 321
Score = 362 bits (928), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 180/249 (72%), Positives = 209/249 (83%), Gaps = 2/249 (0%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110
P+VVVTRERGKN ++IKAL K+ I LELPLIQHA+GPD DRL+SVLN D FDWIIITS
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLN-DKSFDWIIITS 123
Query: 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170
PEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASE
Sbjct: 124 PEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASE 183
Query: 171 LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIP 230
LP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L+QALS P
Sbjct: 184 LPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAP 243
Query: 231 VVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 290
V++VASPSAVR +W++LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEGWV+
Sbjct: 244 VLSVASPSAVR-AWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEGWVE 302
Query: 291 SILEALREH 299
SI+EAL H
Sbjct: 303 SIMEALGAH 311
>sp|Q10QR9|HEM4_ORYSJ Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp.
japonica GN=UROS PE=2 SV=1
Length = 302
Score = 354 bits (909), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 176/258 (68%), Positives = 202/258 (78%), Gaps = 2/258 (0%)
Query: 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103
A +S P VVVTRERGKN KLI AL KH + LELPLI+H +GPDTDRLS+VL D F
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLR-DEKF 98
Query: 104 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT 163
DWI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA
Sbjct: 99 DWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAM 158
Query: 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223
GK LASELP+ + C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +L
Sbjct: 159 GKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLIL 218
Query: 224 KQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHP 283
K ALS PVVAVASPSA+R +W+NL S + W N++ACIGETTASAAK+ GLK++YYPT P
Sbjct: 219 KPALSAPVVAVASPSALR-AWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTP 277
Query: 284 GLEGWVDSILEALREHGH 301
GL+GWV+SILEALR HG
Sbjct: 278 GLDGWVESILEALRAHGQ 295
>sp|Q59294|HEM4_CLOJO Porphyrin biosynthesis protein HemD OS=Clostridium josui GN=hemD
PE=3 SV=1
Length = 504
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 19/256 (7%)
Query: 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111
K++VTR + +G L++ L + + +E P I+ P ++L + WI++TS
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSK 314
Query: 112 EAGSVFLEAWKEAG-----TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKI 166
+F + G N +IG VG+ TA +EV L F+P G+
Sbjct: 315 NGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRH 368
Query: 167 LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA 226
LA + + + VL +A AS++I L + + R+ Y T ++ V K
Sbjct: 369 LALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKKSI 428
Query: 227 L--SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPG 284
+ + + S S V ++ + D S + CIG TA AAK+ L+ V
Sbjct: 429 VHGELKYITFTSASTVE-GFIASMKDIPLESLTAVCIGNKTAEAAKKYNLRYVVAE---- 483
Query: 285 LEGWVDSILEALREHG 300
+ +DS+++ L E G
Sbjct: 484 -KSTIDSMIDKLLEIG 498
>sp|Q8KCJ3|HEM4_CHLTE Uroporphyrinogen-III synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=hemD PE=3 SV=1
Length = 246
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 98/244 (40%), Gaps = 30/244 (12%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQG---PDTDRLSSVLNADTIFDWII 107
V+VTR + + ++ LA++ +D + P I+ G PD R F I
Sbjct: 4 VLVTRPKHQAEPFVRELAQYGLDSVVFPTIEIRPVTGWSVPDLTR----------FAGIF 53
Query: 108 ITSPEAGSVFLEAWKEAG---TPNV---RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK 161
TSP + FLE E PN+ R+ VG T E K + + P
Sbjct: 54 FTSPNSVQFFLERLLEESPDELPNLQQARVWAVGKTTGGDLE------KHGVSIEPLPKS 107
Query: 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY-TTEPVHHVDQ 220
A L S + + + T L+ + + I E ++ RG V L Y +P Q
Sbjct: 108 ADAVSLMSGIDASEIEGKTFLFVRGSLSLGTIPEVIAKRGGICVELTVYDNIQPSLEETQ 167
Query: 221 TV--LKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278
+ L I ++ SPS + + + S +A IG TT+SA ++LG+K
Sbjct: 168 KIKSLLTEGKIDCLSFTSPSTAINFFEAIDSKEVPSDVLIAAIGTTTSSALEKLGVKVDI 227
Query: 279 YPTH 282
P +
Sbjct: 228 IPEY 231
>sp|Q59335|HEM4_CHLP8 Uroporphyrinogen-III synthase OS=Chlorobaculum parvum (strain NCIB
8327) GN=hemD PE=3 SV=1
Length = 246
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 24/256 (9%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQGPDTDRLSSVLNADTIFDWIIITS 110
V+VTR + + ++ L ++ + + P I+ G + L T F I TS
Sbjct: 4 VLVTRPKHQAAPFVRELEQYGLSTVVFPTIEIRPVAGWNVPDL-------TKFAGIFFTS 56
Query: 111 PEAGSVFLEAWKEAGTPNV------RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATG 164
P + FL+ + + R+ VG T E K + + P A
Sbjct: 57 PNSVQFFLKHLLQTAPDELKNLQQTRVWAVGKTTGQDLE------KHGVSIEPLPKIADA 110
Query: 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224
L +++ K T L+ + + I E ++ G V L Y P D +K
Sbjct: 111 VNLMADIDPAEIKGQTFLFVRGSLSLGTIPELIAEFGGTCVELTVYENLPPSLEDTQRVK 170
Query: 225 QALS---IPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 281
L+ + ++ SPS ++ + + S S +A IG TT+ A +++G+K P
Sbjct: 171 DMLAEGKLDCLSFTSPSTAKNFFEAIGSKELSDSVQIAAIGTTTSGALEKMGIKVDIIPE 230
Query: 282 HPGLEGWVDSILEALR 297
+ + +I EAL+
Sbjct: 231 YFDGPSFAKAIAEALK 246
>sp|O08696|FOXM1_MOUSE Forkhead box protein M1 OS=Mus musculus GN=Foxm1 PE=1 SV=2
Length = 760
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 232 VAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY--------YPTHP 283
V V PS V +SW + +S+ +S ++ KR+ LK++Y Y H
Sbjct: 215 VKVEEPSGVSTSWQDSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHI 274
Query: 284 GLEGWVDSILEALREHGHF 302
GW +SI L H F
Sbjct: 275 AKPGWKNSIRHNLSLHDMF 293
>sp|Q08050|FOXM1_HUMAN Forkhead box protein M1 OS=Homo sapiens GN=FOXM1 PE=1 SV=3
Length = 763
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 232 VAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY--------YPTHP 283
V V PS +SW N +S+ +S ++ KR+ LK++Y Y H
Sbjct: 217 VKVEEPSRPSASWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHI 276
Query: 284 GLEGWVDSILEALREHGHF 302
GW +SI L H F
Sbjct: 277 AKPGWKNSIRHNLSLHDMF 295
>sp|P97691|FOXM1_RAT Forkhead box protein M1 OS=Rattus norvegicus GN=Foxm1 PE=2 SV=2
Length = 759
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 232 VAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY--------YPTHP 283
V V +PS SW + +S+ +S ++ KR+ LK++Y Y H
Sbjct: 216 VKVEAPSRASVSWQDSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHI 275
Query: 284 GLEGWVDSILEALREHGHF 302
GW +SI L H F
Sbjct: 276 AKPGWKNSIRHNLSLHDMF 294
>sp|B5R6T2|PHNW_SALG2 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=phnW PE=3
SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5QTH9|PHNW_SALEP 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
enteritidis PT4 (strain P125109) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5FKT6|PHNW_SALDC 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella dublin
(strain CT_02021853) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,879,239
Number of Sequences: 539616
Number of extensions: 4320912
Number of successful extensions: 9730
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 9719
Number of HSP's gapped (non-prelim): 23
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)