Query 022128
Match_columns 302
No_of_seqs 205 out of 1415
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 08:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05752 uroporphyrinogen-III 100.0 4.6E-45 9.9E-50 328.1 28.4 242 48-296 1-251 (255)
2 PRK08811 uroporphyrinogen-III 100.0 1.1E-44 2.5E-49 326.7 27.3 249 43-300 11-264 (266)
3 COG1587 HemD Uroporphyrinogen- 100.0 8.9E-42 1.9E-46 305.5 27.6 239 50-298 1-247 (248)
4 PRK07239 bifunctional uroporph 100.0 1.2E-41 2.6E-46 322.6 29.1 244 45-297 6-277 (381)
5 PRK09189 uroporphyrinogen-III 100.0 2.2E-41 4.9E-46 301.5 25.2 232 51-294 1-239 (240)
6 PRK05928 hemD uroporphyrinogen 100.0 9.6E-41 2.1E-45 297.4 27.8 239 50-296 1-248 (249)
7 PRK06975 bifunctional uroporph 100.0 2.5E-38 5.4E-43 316.5 28.3 242 49-298 2-268 (656)
8 PF02602 HEM4: Uroporphyrinoge 100.0 1.3E-39 2.9E-44 287.7 17.0 219 63-290 1-231 (231)
9 cd06578 HemD Uroporphyrinogen- 100.0 6.5E-38 1.4E-42 276.9 27.2 231 53-292 1-239 (239)
10 KOG4132 Uroporphyrinogen III s 100.0 3E-34 6.6E-39 242.8 23.4 242 51-300 4-259 (260)
11 PRK07168 bifunctional uroporph 100.0 3.9E-33 8.4E-38 268.8 19.4 214 26-277 235-458 (474)
12 PRK05928 hemD uroporphyrinogen 99.6 3.2E-15 7E-20 132.9 13.1 120 48-174 123-247 (249)
13 cd06578 HemD Uroporphyrinogen- 99.6 2E-14 4.3E-19 126.7 14.3 118 47-171 119-239 (239)
14 PRK07239 bifunctional uroporph 99.5 2.3E-13 5E-18 129.2 14.4 122 46-175 138-276 (381)
15 PRK08811 uroporphyrinogen-III 99.5 1.7E-13 3.7E-18 123.9 12.7 114 177-291 17-131 (266)
16 PRK05752 uroporphyrinogen-III 99.5 4.7E-13 1E-17 120.3 12.5 121 48-175 128-251 (255)
17 PF02602 HEM4: Uroporphyrinoge 99.4 1.3E-13 2.7E-18 121.7 6.9 116 47-169 114-231 (231)
18 PRK07168 bifunctional uroporph 99.4 1.2E-12 2.7E-17 126.8 14.4 233 48-291 78-364 (474)
19 PRK09189 uroporphyrinogen-III 99.4 2.4E-12 5.1E-17 114.7 13.0 119 48-173 116-239 (240)
20 COG1587 HemD Uroporphyrinogen- 99.4 2.7E-12 5.8E-17 115.0 12.4 118 50-174 123-244 (248)
21 KOG4132 Uroporphyrinogen III s 99.3 1.8E-11 4E-16 104.6 12.6 123 47-175 130-255 (260)
22 PRK06975 bifunctional uroporph 99.3 1.4E-11 2.9E-16 124.3 13.8 118 178-296 3-134 (656)
23 cd06298 PBP1_CcpA_like Ligand- 96.8 0.064 1.4E-06 47.3 15.3 179 64-264 20-215 (268)
24 cd06295 PBP1_CelR Ligand bindi 96.6 0.082 1.8E-06 47.0 14.3 180 65-266 32-226 (275)
25 cd06299 PBP1_LacI_like_13 Liga 96.5 0.11 2.4E-06 45.7 14.6 179 64-264 20-213 (265)
26 cd01575 PBP1_GntR Ligand-bindi 96.5 0.11 2.4E-06 45.7 14.2 183 64-265 20-216 (268)
27 cd06272 PBP1_hexuronate_repres 96.4 0.079 1.7E-06 46.7 13.0 182 64-269 20-215 (261)
28 cd06273 PBP1_GntR_like_1 This 96.4 0.11 2.4E-06 45.8 13.7 180 63-264 19-216 (268)
29 cd01537 PBP1_Repressors_Sugar_ 96.3 0.11 2.4E-06 45.2 12.8 185 63-266 19-218 (264)
30 cd06309 PBP1_YtfQ_like Peripla 96.2 0.26 5.6E-06 43.8 15.1 219 63-297 19-258 (273)
31 cd06271 PBP1_AglR_RafR_like Li 96.2 0.12 2.6E-06 45.4 12.9 184 63-266 23-221 (268)
32 cd01542 PBP1_TreR_like Ligand- 96.2 0.28 6E-06 43.0 15.0 191 63-278 19-225 (259)
33 cd06283 PBP1_RegR_EndR_KdgR_li 96.1 0.29 6.3E-06 43.0 14.6 182 63-265 19-217 (267)
34 PRK02261 methylaspartate mutas 96.0 0.28 6.1E-06 39.8 13.0 113 178-298 3-136 (137)
35 cd06289 PBP1_MalI_like Ligand- 95.9 0.6 1.3E-05 40.9 15.8 179 64-265 20-217 (268)
36 cd06294 PBP1_ycjW_transcriptio 95.8 0.24 5.2E-06 43.6 13.1 184 63-265 24-222 (270)
37 cd06274 PBP1_FruR Ligand bindi 95.7 0.48 1E-05 41.7 14.5 180 64-265 20-217 (264)
38 PRK10423 transcriptional repre 95.7 0.75 1.6E-05 42.0 16.2 181 64-265 77-274 (327)
39 TIGR01481 ccpA catabolite cont 95.7 0.59 1.3E-05 42.8 15.6 179 65-265 81-275 (329)
40 cd06288 PBP1_sucrose_transcrip 95.6 0.4 8.6E-06 42.2 13.7 178 64-264 21-215 (269)
41 cd06270 PBP1_GalS_like Ligand 95.6 0.67 1.5E-05 40.9 15.1 180 64-264 20-215 (268)
42 cd06297 PBP1_LacI_like_12 Liga 95.6 0.43 9.3E-06 42.4 13.8 181 63-265 19-219 (269)
43 cd06286 PBP1_CcpB_like Ligand- 95.6 0.29 6.2E-06 43.0 12.5 182 63-265 19-214 (260)
44 cd06301 PBP1_rhizopine_binding 95.6 0.44 9.6E-06 42.1 13.7 183 64-264 20-220 (272)
45 cd06281 PBP1_LacI_like_5 Ligan 95.5 0.51 1.1E-05 41.8 13.9 178 64-264 20-214 (269)
46 cd06305 PBP1_methylthioribose_ 95.4 1.3 2.8E-05 39.1 16.3 188 63-271 19-228 (273)
47 PRK10014 DNA-binding transcrip 95.4 0.67 1.5E-05 42.7 14.9 181 65-267 86-293 (342)
48 cd06284 PBP1_LacI_like_6 Ligan 95.4 1.3 2.7E-05 38.9 16.1 180 63-264 19-214 (267)
49 cd06285 PBP1_LacI_like_7 Ligan 95.4 0.77 1.7E-05 40.4 14.7 179 63-264 19-213 (265)
50 cd06275 PBP1_PurR Ligand-bindi 95.4 0.72 1.6E-05 40.6 14.4 181 64-264 20-216 (269)
51 cd06290 PBP1_LacI_like_9 Ligan 95.4 0.59 1.3E-05 41.1 13.8 179 64-264 20-214 (265)
52 TIGR02853 spore_dpaA dipicolin 95.4 0.77 1.7E-05 42.0 14.8 214 50-280 1-262 (287)
53 COG1609 PurR Transcriptional r 95.3 0.49 1.1E-05 44.1 13.7 181 63-263 78-274 (333)
54 cd06296 PBP1_CatR_like Ligand- 95.3 0.33 7.1E-06 42.8 12.0 180 64-264 20-216 (270)
55 PRK11303 DNA-binding transcrip 95.3 1.4 2.9E-05 40.3 16.4 178 64-264 82-276 (328)
56 cd06267 PBP1_LacI_sugar_bindin 95.2 1.2 2.7E-05 38.5 15.4 179 64-264 20-215 (264)
57 PF06506 PrpR_N: Propionate ca 95.2 0.82 1.8E-05 38.6 13.5 132 127-297 33-165 (176)
58 cd06279 PBP1_LacI_like_3 Ligan 95.2 0.5 1.1E-05 42.3 13.0 180 63-266 24-235 (283)
59 TIGR01501 MthylAspMutase methy 95.1 0.57 1.2E-05 37.9 11.6 101 189-297 17-133 (134)
60 cd06292 PBP1_LacI_like_10 Liga 95.1 0.45 9.7E-06 42.1 12.3 185 63-265 19-220 (273)
61 cd02072 Glm_B12_BD B12 binding 95.1 0.52 1.1E-05 37.8 11.1 97 189-293 15-127 (128)
62 cd06313 PBP1_ABC_sugar_binding 95.0 1.4 3E-05 39.3 15.1 193 63-274 19-229 (272)
63 cd06282 PBP1_GntR_like_2 Ligan 95.0 0.92 2E-05 39.7 13.9 178 64-265 20-215 (266)
64 cd06300 PBP1_ABC_sugar_binding 94.9 2.4 5.3E-05 37.3 16.7 161 101-279 59-237 (272)
65 cd06323 PBP1_ribose_binding Pe 94.9 2 4.3E-05 37.6 15.9 182 64-266 20-218 (268)
66 cd06310 PBP1_ABC_sugar_binding 94.9 0.73 1.6E-05 40.7 13.0 184 63-265 19-220 (273)
67 PRK10703 DNA-binding transcrip 94.9 0.89 1.9E-05 41.9 14.0 181 64-264 80-277 (341)
68 cd01545 PBP1_SalR Ligand-bindi 94.8 0.89 1.9E-05 39.9 13.4 185 63-265 19-218 (270)
69 TIGR00640 acid_CoA_mut_C methy 94.8 0.42 9E-06 38.5 10.0 101 189-297 18-128 (132)
70 cd06320 PBP1_allose_binding Pe 94.7 0.86 1.9E-05 40.3 13.1 181 64-264 20-218 (275)
71 PRK02261 methylaspartate mutas 94.6 1.1 2.3E-05 36.4 12.0 113 49-174 2-133 (137)
72 cd06293 PBP1_LacI_like_11 Liga 94.5 2 4.4E-05 37.8 14.9 179 64-265 20-216 (269)
73 cd06280 PBP1_LacI_like_4 Ligan 94.4 0.8 1.7E-05 40.3 11.9 179 63-266 19-212 (263)
74 PF13407 Peripla_BP_4: Peripla 94.2 0.82 1.8E-05 40.1 11.6 193 63-275 18-231 (257)
75 cd06316 PBP1_ABC_sugar_binding 94.2 1.6 3.4E-05 39.3 13.6 186 65-265 21-222 (294)
76 cd01574 PBP1_LacI Ligand-bindi 94.1 1.5 3.4E-05 38.3 13.3 181 63-264 19-212 (264)
77 cd06278 PBP1_LacI_like_2 Ligan 94.0 1 2.2E-05 39.4 11.8 174 64-264 20-213 (266)
78 cd01541 PBP1_AraR Ligand-bindi 93.8 3.3 7.1E-05 36.5 14.9 178 64-264 20-221 (273)
79 cd01536 PBP1_ABC_sugar_binding 93.7 2.5 5.5E-05 36.7 13.7 181 65-264 21-217 (267)
80 PRK10653 D-ribose transporter 93.4 5.8 0.00013 35.7 15.8 178 63-264 46-242 (295)
81 cd06277 PBP1_LacI_like_1 Ligan 93.3 2.7 5.8E-05 37.0 13.3 179 64-264 23-215 (268)
82 TIGR02417 fruct_sucro_rep D-fr 93.0 5.3 0.00012 36.4 15.2 177 64-264 81-275 (327)
83 PF04392 ABC_sub_bind: ABC tra 92.9 3.2 6.8E-05 37.8 13.4 190 62-263 17-219 (294)
84 PRK10727 DNA-binding transcrip 92.8 3.8 8.3E-05 37.7 14.1 178 65-265 81-276 (343)
85 cd06287 PBP1_LacI_like_8 Ligan 92.8 2 4.4E-05 38.3 11.8 171 63-260 27-212 (269)
86 cd06354 PBP1_BmpA_PnrA_like Pe 92.6 4.2 9E-05 36.1 13.6 179 63-263 22-214 (265)
87 cd02072 Glm_B12_BD B12 binding 92.5 1.5 3.3E-05 35.1 9.4 97 63-172 17-127 (128)
88 cd06314 PBP1_tmGBP Periplasmic 92.5 1.5 3.2E-05 38.8 10.4 183 63-266 18-217 (271)
89 cd06312 PBP1_ABC_sugar_binding 92.4 4.9 0.00011 35.4 13.7 217 63-298 20-256 (271)
90 PRK10401 DNA-binding transcrip 92.2 5.3 0.00011 36.9 14.2 179 64-265 80-276 (346)
91 cd06302 PBP1_LsrB_Quorum_Sensi 92.0 1.6 3.5E-05 39.5 10.4 191 63-271 19-230 (298)
92 cd01544 PBP1_GalR Ligand-bindi 91.9 8.5 0.00018 33.9 15.3 200 63-295 24-244 (270)
93 PF00532 Peripla_BP_1: Peripla 91.8 0.92 2E-05 41.1 8.4 169 63-252 21-203 (279)
94 cd06307 PBP1_uncharacterized_s 91.8 5.5 0.00012 35.2 13.4 185 64-264 20-221 (275)
95 TIGR00640 acid_CoA_mut_C methy 91.7 3.7 8E-05 33.0 10.9 110 50-172 2-124 (132)
96 COG2185 Sbm Methylmalonyl-CoA 91.7 2.8 6E-05 34.2 10.0 107 49-167 11-130 (143)
97 cd06317 PBP1_ABC_sugar_binding 91.3 6.1 0.00013 34.7 13.1 182 64-264 21-223 (275)
98 PRK09492 treR trehalose repres 91.1 11 0.00025 33.9 16.2 174 63-264 82-267 (315)
99 cd06291 PBP1_Qymf_like Ligand 90.8 9.3 0.0002 33.4 13.7 174 63-264 19-211 (265)
100 TIGR01501 MthylAspMutase methy 90.7 4.5 9.6E-05 32.7 10.4 110 51-173 2-130 (134)
101 PRK08306 dipicolinate synthase 90.7 5.4 0.00012 36.6 12.3 209 50-279 2-262 (296)
102 cd02071 MM_CoA_mut_B12_BD meth 90.7 3.3 7.1E-05 32.6 9.6 95 64-171 18-120 (122)
103 cd06276 PBP1_FucR_like Ligand- 90.5 3.7 8.1E-05 36.1 10.8 197 63-295 18-227 (247)
104 cd06318 PBP1_ABC_sugar_binding 90.4 12 0.00026 33.0 18.0 184 63-264 19-226 (282)
105 cd02071 MM_CoA_mut_B12_BD meth 90.3 4.4 9.6E-05 31.8 10.0 96 190-293 16-121 (122)
106 PRK09526 lacI lac repressor; R 90.2 6.2 0.00013 36.2 12.5 178 64-264 84-278 (342)
107 TIGR02329 propionate_PrpR prop 90.1 11 0.00024 37.5 14.7 130 128-297 54-184 (526)
108 PRK09496 trkA potassium transp 89.9 19 0.00042 34.6 19.3 169 99-281 62-262 (453)
109 cd01965 Nitrogenase_MoFe_beta_ 89.8 20 0.00043 34.6 16.7 223 61-297 170-425 (428)
110 cd06308 PBP1_sensor_kinase_lik 89.6 6.9 0.00015 34.4 11.9 180 64-264 20-218 (270)
111 cd06319 PBP1_ABC_sugar_binding 89.6 7.4 0.00016 34.2 12.1 181 64-263 20-220 (277)
112 cd01538 PBP1_ABC_xylose_bindin 89.5 11 0.00024 33.6 13.4 180 63-265 19-227 (288)
113 PF10087 DUF2325: Uncharacteri 89.1 7.9 0.00017 29.1 10.5 94 180-294 1-95 (97)
114 PRK14987 gluconate operon tran 89.0 18 0.00039 33.0 14.9 178 64-264 84-277 (331)
115 cd01972 Nitrogenase_VnfE_like 89.0 23 0.00049 34.2 16.5 224 60-297 179-422 (426)
116 COG4822 CbiK Cobalamin biosynt 88.8 7.2 0.00016 34.1 10.6 143 63-214 63-239 (265)
117 COG2185 Sbm Methylmalonyl-CoA 88.3 6.2 0.00013 32.2 9.5 104 188-298 27-139 (143)
118 cd01391 Periplasmic_Binding_Pr 88.3 15 0.00032 31.2 14.6 150 101-264 57-219 (269)
119 cd01539 PBP1_GGBP Periplasmic 88.1 20 0.00042 32.4 14.3 185 64-263 20-241 (303)
120 PF04016 DUF364: Domain of unk 88.1 0.58 1.2E-05 38.4 3.5 111 177-294 10-130 (147)
121 PRK10339 DNA-binding transcrip 87.9 21 0.00045 32.5 14.2 171 64-264 88-272 (327)
122 PRK06756 flavodoxin; Provision 87.8 6.9 0.00015 31.6 9.8 95 191-295 20-139 (148)
123 cd06324 PBP1_ABC_sugar_binding 87.2 22 0.00048 32.1 17.8 202 64-277 21-255 (305)
124 cd06304 PBP1_BmpA_like Peripla 86.9 13 0.00028 32.7 11.8 177 64-263 22-210 (260)
125 cd06306 PBP1_TorT-like TorT-li 86.4 7.5 0.00016 34.3 10.0 187 64-271 20-228 (268)
126 cd06311 PBP1_ABC_sugar_binding 86.2 23 0.00049 31.1 15.8 144 101-260 59-217 (274)
127 cd06322 PBP1_ABC_sugar_binding 85.8 23 0.0005 30.8 16.7 180 63-264 19-214 (267)
128 PRK02910 light-independent pro 85.7 40 0.00087 33.5 16.6 144 59-213 174-329 (519)
129 cd02067 B12-binding B12 bindin 85.6 9.6 0.00021 29.5 9.2 84 63-158 17-108 (119)
130 PRK15408 autoinducer 2-binding 85.3 7.2 0.00016 36.3 9.7 175 64-261 44-241 (336)
131 PRK15424 propionate catabolism 84.9 45 0.00098 33.4 16.5 130 128-297 64-194 (538)
132 PLN02928 oxidoreductase family 84.8 31 0.00067 32.4 13.7 31 177-207 158-188 (347)
133 PRK11041 DNA-binding transcrip 84.1 31 0.00067 30.9 14.5 182 63-265 55-252 (309)
134 cd06321 PBP1_ABC_sugar_binding 84.0 28 0.00062 30.4 17.6 146 101-263 56-215 (271)
135 PRK09701 D-allose transporter 83.8 20 0.00044 32.6 11.9 186 63-265 44-253 (311)
136 cd01974 Nitrogenase_MoFe_beta 83.5 45 0.00097 32.3 18.4 200 62-277 176-399 (435)
137 PRK11790 D-3-phosphoglycerate 83.2 41 0.00089 32.4 14.1 174 46-241 6-216 (409)
138 PF13344 Hydrolase_6: Haloacid 83.1 5.8 0.00012 30.2 6.7 79 164-274 19-100 (101)
139 cd06341 PBP1_ABC_ligand_bindin 82.9 38 0.00082 30.9 14.7 138 101-252 66-212 (341)
140 cd02070 corrinoid_protein_B12- 82.3 27 0.00059 29.9 11.4 91 50-146 82-183 (201)
141 PRK06756 flavodoxin; Provision 81.9 8.1 0.00018 31.2 7.6 66 63-138 20-93 (148)
142 TIGR01282 nifD nitrogenase mol 81.3 57 0.0012 32.0 16.3 217 59-296 219-451 (466)
143 PRK06703 flavodoxin; Provision 80.9 20 0.00043 29.0 9.7 75 192-276 21-116 (151)
144 PRK14192 bifunctional 5,10-met 80.3 23 0.0005 32.3 10.7 150 65-237 54-211 (283)
145 PF03358 FMN_red: NADPH-depend 80.3 5.8 0.00013 32.0 6.2 68 180-249 2-97 (152)
146 cd02067 B12-binding B12 bindin 80.0 15 0.00033 28.3 8.3 83 189-278 15-107 (119)
147 PRK10569 NAD(P)H-dependent FMN 79.9 9.4 0.0002 32.6 7.6 58 192-250 22-94 (191)
148 PRK15438 erythronate-4-phospha 79.7 19 0.00041 34.3 10.2 163 51-240 1-179 (378)
149 PRK10537 voltage-gated potassi 79.2 20 0.00044 34.3 10.3 114 50-172 240-369 (393)
150 PRK00107 gidB 16S rRNA methylt 79.0 16 0.00034 31.1 8.7 55 163-217 123-177 (187)
151 TIGR00853 pts-lac PTS system, 78.9 14 0.0003 27.8 7.4 81 178-268 3-88 (95)
152 PRK09590 celB cellobiose phosp 78.9 24 0.00051 27.2 8.7 94 179-295 2-103 (104)
153 TIGR02405 trehalos_R_Ecol treh 78.8 50 0.0011 29.8 14.8 172 64-264 80-264 (311)
154 PF00148 Oxidored_nitro: Nitro 78.7 10 0.00022 36.0 8.2 229 48-297 142-395 (398)
155 cd01543 PBP1_XylR Ligand-bindi 78.7 44 0.00096 29.1 11.9 174 64-264 19-209 (265)
156 cd01540 PBP1_arabinose_binding 78.5 18 0.0004 32.0 9.5 68 63-137 19-88 (289)
157 PF06180 CbiK: Cobalt chelatas 78.4 3.6 7.9E-05 37.1 4.7 142 62-205 60-237 (262)
158 cd00316 Oxidoreductase_nitroge 77.9 63 0.0014 30.5 17.9 218 61-297 167-396 (399)
159 PRK08339 short chain dehydroge 77.6 46 0.001 29.4 11.7 75 47-125 5-84 (263)
160 cd06303 PBP1_LuxPQ_Quorum_Sens 77.2 51 0.0011 29.1 15.6 198 63-271 20-235 (280)
161 PF03358 FMN_red: NADPH-depend 76.2 4.8 0.0001 32.5 4.6 71 63-134 21-112 (152)
162 TIGR03567 FMN_reduc_SsuE FMN r 76.2 13 0.00029 30.9 7.4 57 193-250 22-93 (171)
163 PRK10537 voltage-gated potassi 75.3 28 0.00061 33.3 10.1 112 179-291 241-367 (393)
164 PRK09496 trkA potassium transp 75.3 32 0.0007 33.1 10.8 113 177-290 230-360 (453)
165 PRK09426 methylmalonyl-CoA mut 74.9 20 0.00042 37.2 9.4 101 189-297 598-708 (714)
166 PLN02516 methylenetetrahydrofo 74.8 18 0.0004 33.3 8.3 154 66-238 61-220 (299)
167 PF03808 Glyco_tran_WecB: Glyc 74.7 36 0.00078 28.4 9.6 126 131-266 9-138 (172)
168 PRK10669 putative cation:proto 74.7 32 0.0007 34.4 10.9 109 179-289 418-544 (558)
169 TIGR02955 TMAO_TorT TMAO reduc 74.7 37 0.0008 30.4 10.4 185 65-274 21-230 (295)
170 TIGR01283 nifE nitrogenase mol 74.0 91 0.002 30.4 18.8 221 59-297 209-442 (456)
171 PF02401 LYTB: LytB protein; 73.7 73 0.0016 29.1 13.9 227 51-298 29-280 (281)
172 PRK10569 NAD(P)H-dependent FMN 73.3 16 0.00034 31.3 7.2 58 64-121 22-92 (191)
173 cd01979 Pchlide_reductase_N Pc 72.2 93 0.002 29.7 13.0 224 51-297 156-392 (396)
174 COG2014 Uncharacterized conser 72.2 44 0.00095 29.3 9.3 144 131-295 80-233 (250)
175 TIGR01285 nifN nitrogenase mol 72.0 95 0.0021 30.1 13.0 195 59-276 180-394 (432)
176 PRK00257 erythronate-4-phospha 71.8 51 0.0011 31.5 10.9 162 51-239 1-178 (381)
177 COG2984 ABC-type uncharacteriz 71.8 86 0.0019 29.2 13.3 176 51-241 31-225 (322)
178 cd01976 Nitrogenase_MoFe_alpha 71.4 1E+02 0.0022 29.8 19.2 217 59-296 184-416 (421)
179 cd05564 PTS_IIB_chitobiose_lic 71.4 37 0.00079 25.5 8.0 77 180-266 1-82 (96)
180 cd03785 GT1_MurG MurG is an N- 71.2 66 0.0014 29.3 11.5 102 180-297 213-323 (350)
181 cd06167 LabA_like LabA_like pr 71.1 15 0.00032 29.5 6.3 83 61-145 53-142 (149)
182 cd01968 Nitrogenase_NifE_I Nit 71.0 1E+02 0.0022 29.6 18.5 222 58-297 169-403 (410)
183 PRK14191 bifunctional 5,10-met 70.9 55 0.0012 30.0 10.4 151 66-237 53-209 (285)
184 COG0826 Collagenase and relate 70.8 55 0.0012 30.8 10.7 68 227-295 91-159 (347)
185 TIGR01753 flav_short flavodoxi 70.1 14 0.00031 29.0 5.9 63 63-136 17-88 (140)
186 PRK01175 phosphoribosylformylg 69.9 34 0.00074 30.8 8.8 91 49-155 2-109 (261)
187 cd05565 PTS_IIB_lactose PTS_II 69.8 31 0.00068 26.2 7.3 77 180-267 2-84 (99)
188 PRK00726 murG undecaprenyldiph 69.4 93 0.002 28.6 12.1 102 180-298 214-324 (357)
189 TIGR01284 alt_nitrog_alph nitr 69.3 1.2E+02 0.0026 29.7 19.0 213 60-297 212-442 (457)
190 PRK12480 D-lactate dehydrogena 69.2 99 0.0021 28.8 15.5 171 51-240 2-210 (330)
191 TIGR02637 RhaS rhamnose ABC tr 68.9 86 0.0019 28.0 14.8 54 228-283 185-241 (302)
192 cd06325 PBP1_ABC_uncharacteriz 68.9 79 0.0017 27.6 14.0 153 101-264 59-220 (281)
193 cd06315 PBP1_ABC_sugar_binding 68.5 84 0.0018 27.7 15.8 193 64-270 21-233 (280)
194 TIGR00288 conserved hypothetic 67.4 35 0.00076 28.4 7.7 77 62-146 68-149 (160)
195 TIGR03566 FMN_reduc_MsuE FMN r 67.4 21 0.00045 29.7 6.6 27 222-249 62-95 (174)
196 TIGR02663 nifX nitrogen fixati 67.2 9.7 0.00021 29.8 4.2 42 260-301 71-112 (119)
197 COG4635 HemG Flavodoxin [Energ 66.9 15 0.00032 30.7 5.3 66 62-138 18-91 (175)
198 PRK14176 bifunctional 5,10-met 66.3 62 0.0014 29.6 9.8 156 53-234 43-213 (287)
199 cd01977 Nitrogenase_VFe_alpha 66.1 1.3E+02 0.0028 28.9 19.3 219 59-297 174-405 (415)
200 PF10087 DUF2325: Uncharacteri 65.6 41 0.00089 25.1 7.3 56 53-112 2-58 (97)
201 PRK06703 flavodoxin; Provision 65.5 18 0.00039 29.3 5.7 63 63-136 20-90 (151)
202 PRK07765 para-aminobenzoate sy 65.1 38 0.00082 29.4 7.9 93 51-156 1-98 (214)
203 PF03709 OKR_DC_1_N: Orn/Lys/A 64.8 54 0.0012 25.3 8.1 68 62-138 6-77 (115)
204 PLN02616 tetrahydrofolate dehy 64.6 35 0.00077 32.3 8.0 68 162-237 213-283 (364)
205 PRK10936 TMAO reductase system 64.4 1.2E+02 0.0026 28.0 12.6 189 64-274 67-277 (343)
206 TIGR03427 ABC_peri_uca ABC tra 64.4 1.2E+02 0.0027 28.1 12.4 139 65-241 26-166 (328)
207 cd06320 PBP1_allose_binding Pe 64.1 39 0.00083 29.6 8.0 87 51-137 123-218 (275)
208 PRK14478 nitrogenase molybdenu 64.0 1.5E+02 0.0033 29.1 17.8 199 59-277 203-415 (475)
209 PF00389 2-Hacid_dh: D-isomer 63.7 51 0.0011 25.9 7.9 94 53-170 1-100 (133)
210 PRK14719 bifunctional RNAse/5- 63.7 52 0.0011 31.2 9.1 78 119-205 15-99 (360)
211 PF02571 CbiJ: Precorrin-6x re 63.7 1.1E+02 0.0024 27.3 14.1 198 51-279 1-225 (249)
212 CHL00073 chlN photochlorophyll 63.6 1.5E+02 0.0034 29.0 13.8 221 52-298 195-442 (457)
213 PRK10792 bifunctional 5,10-met 62.6 76 0.0017 29.0 9.6 150 66-241 55-217 (285)
214 PRK14175 bifunctional 5,10-met 62.3 79 0.0017 29.0 9.7 147 66-238 54-211 (286)
215 PF02310 B12-binding: B12 bind 62.2 46 0.00099 25.4 7.3 70 62-137 17-90 (121)
216 cd01080 NAD_bind_m-THF_DH_Cycl 62.0 40 0.00086 28.2 7.2 68 163-238 27-97 (168)
217 TIGR01861 ANFD nitrogenase iro 62.0 1.7E+02 0.0038 29.1 18.0 219 59-297 214-445 (513)
218 cd03466 Nitrogenase_NifN_2 Nit 61.7 1.6E+02 0.0034 28.5 18.2 225 58-297 166-426 (429)
219 cd01391 Periplasmic_Binding_Pr 61.2 49 0.0011 27.8 8.0 76 63-138 143-220 (269)
220 PRK06490 glutamine amidotransf 61.1 68 0.0015 28.4 8.9 94 49-157 6-109 (239)
221 PF02882 THF_DHG_CYH_C: Tetrah 61.0 28 0.0006 29.0 6.0 69 162-238 18-89 (160)
222 PRK15452 putative protease; Pr 60.8 1.4E+02 0.0031 29.1 11.8 65 227-292 88-153 (443)
223 PRK07308 flavodoxin; Validated 60.8 28 0.0006 28.0 5.9 75 52-137 5-91 (146)
224 TIGR03567 FMN_reduc_SsuE FMN r 60.4 27 0.00058 29.0 5.9 70 65-134 22-104 (171)
225 PRK14189 bifunctional 5,10-met 60.0 95 0.0021 28.4 9.8 147 65-237 53-210 (285)
226 cd06268 PBP1_ABC_transporter_L 59.8 1.2E+02 0.0025 26.3 13.6 150 102-264 66-225 (298)
227 PF03853 YjeF_N: YjeF-related 59.4 16 0.00034 30.5 4.3 37 176-212 23-63 (169)
228 TIGR02690 resist_ArsH arsenica 59.4 1.2E+02 0.0027 26.5 10.1 90 47-137 23-137 (219)
229 cd06326 PBP1_STKc_like Type I 59.2 1.4E+02 0.003 27.0 13.0 146 101-262 67-224 (336)
230 PRK08410 2-hydroxyacid dehydro 58.9 1.5E+02 0.0032 27.3 13.4 62 177-241 144-209 (311)
231 cd03129 GAT1_Peptidase_E_like 58.9 67 0.0015 27.5 8.4 63 177-244 28-95 (210)
232 PRK03619 phosphoribosylformylg 58.3 70 0.0015 27.8 8.4 80 51-145 1-95 (219)
233 cd00615 Orn_deC_like Ornithine 58.1 26 0.00057 31.7 6.0 63 48-112 97-164 (294)
234 PRK08250 glutamine amidotransf 58.1 69 0.0015 28.2 8.4 91 51-156 1-106 (235)
235 PRK14190 bifunctional 5,10-met 58.0 1.3E+02 0.0029 27.5 10.3 131 65-208 53-189 (284)
236 PRK06895 putative anthranilate 57.9 96 0.0021 26.1 9.1 83 51-146 2-89 (190)
237 cd06341 PBP1_ABC_ligand_bindin 57.7 55 0.0012 29.8 8.1 69 63-133 151-220 (341)
238 cd05212 NAD_bind_m-THF_DH_Cycl 57.6 39 0.00085 27.4 6.2 70 162-239 10-82 (140)
239 PRK11921 metallo-beta-lactamas 57.2 1.7E+02 0.0037 27.8 11.6 97 192-295 267-385 (394)
240 cd01741 GATase1_1 Subgroup of 57.0 91 0.002 26.0 8.7 86 53-146 4-98 (188)
241 PLN02897 tetrahydrofolate dehy 56.9 61 0.0013 30.5 8.1 48 162-209 196-246 (345)
242 TIGR01278 DPOR_BchB light-inde 56.9 2.1E+02 0.0046 28.4 17.6 141 60-211 175-329 (511)
243 TIGR01133 murG undecaprenyldip 56.9 1.2E+02 0.0025 27.6 10.2 103 179-297 210-320 (348)
244 COG0075 Serine-pyruvate aminot 56.8 57 0.0012 31.2 8.0 61 173-235 75-138 (383)
245 cd06289 PBP1_MalI_like Ligand- 56.8 82 0.0018 27.1 8.8 76 63-138 137-217 (268)
246 PF11798 IMS_HHH: IMS family H 56.3 9.4 0.0002 22.6 1.8 31 238-274 2-32 (32)
247 PRK14183 bifunctional 5,10-met 56.1 70 0.0015 29.2 8.2 146 66-237 53-209 (281)
248 PRK04017 hypothetical protein; 55.9 43 0.00092 27.0 6.0 81 115-204 10-96 (132)
249 PRK05569 flavodoxin; Provision 55.8 29 0.00062 27.5 5.2 38 99-136 45-91 (141)
250 PF02310 B12-binding: B12 bind 55.7 77 0.0017 24.1 7.5 84 189-279 16-110 (121)
251 PRK06849 hypothetical protein; 55.6 70 0.0015 30.2 8.6 90 49-141 3-113 (389)
252 PRK13982 bifunctional SbtC-lik 55.2 54 0.0012 32.3 7.8 34 46-79 252-302 (475)
253 TIGR02634 xylF D-xylose ABC tr 54.9 1.6E+02 0.0035 26.4 14.6 177 62-262 17-218 (302)
254 PF11731 Cdd1: Pathogenicity l 54.0 13 0.00028 28.1 2.6 39 258-296 17-55 (93)
255 PF13377 Peripla_BP_3: Peripla 54.0 25 0.00055 28.0 4.7 84 179-263 10-105 (160)
256 PRK15062 hydrogenase isoenzyme 53.8 2E+02 0.0044 27.3 12.4 145 108-277 7-162 (364)
257 cd01079 NAD_bind_m-THF_DH NAD 53.8 71 0.0015 27.6 7.4 31 177-207 61-92 (197)
258 cd01966 Nitrogenase_NifN_1 Nit 53.6 1E+02 0.0022 29.7 9.4 214 60-297 171-414 (417)
259 cd01980 Chlide_reductase_Y Chl 53.2 2.2E+02 0.0047 27.4 15.4 206 51-278 160-373 (416)
260 PRK11303 DNA-binding transcrip 53.1 79 0.0017 28.6 8.3 71 63-136 199-275 (328)
261 cd03132 GATase1_catalase Type 53.0 1.1E+02 0.0024 24.1 8.9 71 228-300 62-142 (142)
262 PRK14187 bifunctional 5,10-met 52.8 73 0.0016 29.3 7.8 132 66-209 54-192 (294)
263 PRK02842 light-independent pro 52.5 2.2E+02 0.0049 27.4 16.6 206 50-276 166-381 (427)
264 PRK07825 short chain dehydroge 52.2 1.6E+02 0.0035 25.7 12.7 71 47-124 2-75 (273)
265 cd06310 PBP1_ABC_sugar_binding 52.2 80 0.0017 27.4 8.0 72 63-138 143-220 (273)
266 COG0075 Serine-pyruvate aminot 52.1 38 0.00083 32.3 6.1 63 46-109 76-138 (383)
267 PRK13143 hisH imidazole glycer 52.0 87 0.0019 26.7 7.9 78 51-144 1-86 (200)
268 cd06282 PBP1_GntR_like_2 Ligan 51.9 40 0.00086 29.1 5.9 73 63-137 137-214 (266)
269 PRK09739 hypothetical protein; 51.8 33 0.00071 29.2 5.2 57 191-248 24-105 (199)
270 TIGR01737 FGAM_synth_I phospho 51.8 86 0.0019 27.4 8.0 80 51-145 1-94 (227)
271 PF13458 Peripla_BP_6: Peripla 51.7 1.8E+02 0.004 26.1 12.6 136 101-251 68-213 (343)
272 PF02579 Nitro_FeMo-Co: Dinitr 51.7 22 0.00047 25.9 3.6 33 260-293 61-93 (94)
273 cd01537 PBP1_Repressors_Sugar_ 51.6 60 0.0013 27.6 7.0 47 93-139 169-218 (264)
274 PF02502 LacAB_rpiB: Ribose/Ga 51.3 1.3E+02 0.0028 24.4 9.1 103 190-296 14-122 (140)
275 PRK14180 bifunctional 5,10-met 51.2 97 0.0021 28.3 8.3 128 65-209 52-190 (282)
276 PRK03094 hypothetical protein; 51.1 26 0.00057 25.6 3.7 36 188-236 8-43 (80)
277 PF04273 DUF442: Putative phos 51.1 36 0.00077 26.4 4.8 69 50-118 28-103 (110)
278 cd01743 GATase1_Anthranilate_S 51.1 1.4E+02 0.003 24.9 8.9 87 54-156 3-93 (184)
279 TIGR01753 flav_short flavodoxi 50.9 1.2E+02 0.0025 23.6 9.5 32 265-297 102-137 (140)
280 PRK14188 bifunctional 5,10-met 50.4 86 0.0019 28.9 7.9 125 65-207 53-188 (296)
281 PRK09271 flavodoxin; Provision 50.4 79 0.0017 25.9 7.1 68 63-137 19-94 (160)
282 smart00852 MoCF_biosynth Proba 50.2 20 0.00044 28.4 3.5 49 62-114 20-69 (135)
283 COG0426 FpaA Uncharacterized f 50.1 1.5E+02 0.0033 28.4 9.6 125 164-295 230-382 (388)
284 PRK05452 anaerobic nitric oxid 50.1 2.6E+02 0.0057 27.5 11.9 94 191-288 270-382 (479)
285 TIGR03590 PseG pseudaminic aci 49.9 78 0.0017 28.5 7.6 38 166-207 22-59 (279)
286 PLN03139 formate dehydrogenase 49.8 2.4E+02 0.0052 27.0 12.0 159 62-241 64-268 (386)
287 cd01740 GATase1_FGAR_AT Type 1 49.8 1.1E+02 0.0024 27.0 8.4 75 61-145 11-98 (238)
288 cd06314 PBP1_tmGBP Periplasmic 49.6 70 0.0015 27.9 7.2 72 63-138 140-216 (271)
289 PRK00087 4-hydroxy-3-methylbut 49.6 3.1E+02 0.0067 28.1 12.9 210 50-299 30-278 (647)
290 PRK07053 glutamine amidotransf 49.6 1.2E+02 0.0026 26.7 8.5 52 50-110 2-55 (234)
291 cd05844 GT1_like_7 Glycosyltra 49.4 2E+02 0.0043 26.0 10.5 124 164-298 203-336 (367)
292 PRK14172 bifunctional 5,10-met 49.3 1.1E+02 0.0023 28.0 8.3 126 66-208 54-189 (278)
293 PRK09922 UDP-D-galactose:(gluc 49.3 1.6E+02 0.0034 27.2 9.8 44 255-300 281-326 (359)
294 PLN02409 serine--glyoxylate am 49.2 1E+02 0.0022 29.3 8.6 33 177-209 83-115 (401)
295 cd06308 PBP1_sensor_kinase_lik 49.0 55 0.0012 28.6 6.4 88 50-137 122-218 (270)
296 PRK09426 methylmalonyl-CoA mut 48.7 91 0.002 32.5 8.6 110 50-172 582-704 (714)
297 PLN00016 RNA-binding protein; 48.7 2.1E+02 0.0046 26.7 10.7 89 44-136 46-165 (378)
298 cd06533 Glyco_transf_WecG_TagA 48.7 1.6E+02 0.0034 24.5 9.3 120 131-263 7-133 (171)
299 COG3473 Maleate cis-trans isom 48.3 1.5E+02 0.0032 26.0 8.4 107 164-276 106-226 (238)
300 PF02350 Epimerase_2: UDP-N-ac 48.2 81 0.0018 29.5 7.7 219 52-298 69-318 (346)
301 COG0569 TrkA K+ transport syst 48.0 1.9E+02 0.0041 25.2 10.8 61 222-283 58-123 (225)
302 PRK08605 D-lactate dehydrogena 47.8 2E+02 0.0044 26.7 10.2 61 177-240 145-212 (332)
303 TIGR01286 nifK nitrogenase mol 47.8 3E+02 0.0065 27.5 16.6 202 60-277 234-459 (515)
304 cd03129 GAT1_Peptidase_E_like 47.6 96 0.0021 26.5 7.5 68 49-123 28-100 (210)
305 TIGR02690 resist_ArsH arsenica 47.5 1.5E+02 0.0032 26.0 8.6 73 177-251 25-119 (219)
306 COG0436 Aspartate/tyrosine/aro 47.5 41 0.00089 32.1 5.6 60 49-112 112-173 (393)
307 cd06309 PBP1_YtfQ_like Peripla 47.5 1.6E+02 0.0036 25.5 9.3 47 93-139 175-225 (273)
308 cd06371 PBP1_sensory_GC_DEF_li 47.3 2.5E+02 0.0053 26.4 11.2 84 164-252 120-217 (382)
309 PRK05569 flavodoxin; Provision 47.3 1.2E+02 0.0027 23.8 7.7 68 226-295 46-135 (141)
310 PRK10669 putative cation:proto 47.2 1.8E+02 0.0038 29.1 10.3 114 51-173 418-549 (558)
311 PRK14174 bifunctional 5,10-met 47.2 2E+02 0.0042 26.5 9.7 150 65-239 52-217 (295)
312 PRK05282 (alpha)-aspartyl dipe 47.2 85 0.0018 27.8 7.2 74 165-249 18-98 (233)
313 PF01136 Peptidase_U32: Peptid 47.2 88 0.0019 27.1 7.4 66 227-293 14-80 (233)
314 PRK14177 bifunctional 5,10-met 47.0 1.2E+02 0.0025 27.8 8.1 125 66-208 55-190 (284)
315 PRK14166 bifunctional 5,10-met 47.0 1.2E+02 0.0026 27.7 8.3 127 66-209 52-189 (282)
316 PRK00676 hemA glutamyl-tRNA re 47.0 55 0.0012 30.7 6.2 58 177-236 173-234 (338)
317 PRK00170 azoreductase; Reviewe 47.0 27 0.00058 29.5 3.9 55 193-248 25-112 (201)
318 PRK07206 hypothetical protein; 46.9 2.1E+02 0.0045 27.1 10.5 30 179-208 3-32 (416)
319 PF13377 Peripla_BP_3: Peripla 46.9 83 0.0018 24.9 6.7 75 63-138 29-107 (160)
320 PRK05568 flavodoxin; Provision 46.8 48 0.001 26.2 5.2 72 53-136 6-90 (142)
321 PRK14171 bifunctional 5,10-met 46.7 97 0.0021 28.4 7.6 147 66-237 54-211 (288)
322 cd03145 GAT1_cyanophycinase Ty 46.7 49 0.0011 28.7 5.6 71 49-123 28-103 (217)
323 PLN02409 serine--glyoxylate am 46.6 59 0.0013 30.9 6.6 62 49-111 83-146 (401)
324 PF02887 PK_C: Pyruvate kinase 46.2 84 0.0018 24.2 6.3 46 255-300 39-88 (117)
325 TIGR01459 HAD-SF-IIA-hyp4 HAD- 46.1 1.6E+02 0.0034 25.7 8.9 78 57-138 24-105 (242)
326 PRK14178 bifunctional 5,10-met 46.1 2.2E+02 0.0048 25.9 9.8 148 66-239 48-206 (279)
327 COG5426 Uncharacterized membra 46.0 17 0.00036 31.3 2.4 49 59-112 31-79 (254)
328 PRK06079 enoyl-(acyl carrier p 45.6 99 0.0022 27.0 7.5 70 46-123 3-79 (252)
329 PF05991 NYN_YacP: YacP-like N 45.5 37 0.0008 28.3 4.4 50 152-204 67-117 (166)
330 PRK01355 azoreductase; Reviewe 45.4 49 0.0011 28.2 5.3 56 192-248 25-103 (199)
331 PF03698 UPF0180: Uncharacteri 45.1 35 0.00075 25.0 3.6 37 187-236 7-43 (80)
332 PRK09739 hypothetical protein; 44.4 60 0.0013 27.6 5.7 50 63-112 24-89 (199)
333 PRK02812 ribose-phosphate pyro 44.1 2.7E+02 0.0059 26.0 12.7 207 46-283 64-292 (330)
334 cd04949 GT1_gtfA_like This fam 44.1 2.5E+02 0.0055 25.6 11.6 183 98-298 153-345 (372)
335 TIGR01308 rpmD_bact ribosomal 43.9 35 0.00075 23.0 3.2 35 262-296 13-51 (55)
336 PRK05611 rpmD 50S ribosomal pr 43.8 39 0.00085 23.1 3.5 36 261-296 15-54 (59)
337 cd01543 PBP1_XylR Ligand-bindi 43.7 2.1E+02 0.0047 24.6 9.5 88 50-137 109-209 (265)
338 cd06386 PBP1_NPR_C_like Ligand 43.6 2.1E+02 0.0045 26.9 9.8 84 163-252 124-218 (387)
339 cd01658 Ribosomal_L30 Ribosoma 43.5 32 0.00069 23.0 3.0 36 261-296 12-51 (54)
340 cd03145 GAT1_cyanophycinase Ty 43.1 97 0.0021 26.9 6.9 70 177-250 28-103 (217)
341 PF04127 DFP: DNA / pantothena 42.9 61 0.0013 27.6 5.4 32 48-79 1-49 (185)
342 TIGR02149 glgA_Coryne glycogen 42.9 2.6E+02 0.0055 25.7 10.2 21 100-120 142-162 (388)
343 TIGR00521 coaBC_dfp phosphopan 42.9 99 0.0021 29.6 7.4 35 46-80 181-232 (390)
344 cd06323 PBP1_ribose_binding Pe 42.6 82 0.0018 27.1 6.5 46 93-138 172-217 (268)
345 PRK09004 FMN-binding protein M 42.6 64 0.0014 26.1 5.3 62 63-137 20-91 (146)
346 TIGR02069 cyanophycinase cyano 42.5 1.4E+02 0.003 26.6 7.9 79 167-249 16-101 (250)
347 PRK10310 PTS system galactitol 42.4 1.3E+02 0.0028 22.4 6.6 26 179-204 3-34 (94)
348 PRK00147 queA S-adenosylmethio 42.4 1.5E+02 0.0034 27.8 8.3 89 178-272 173-264 (342)
349 cd06313 PBP1_ABC_sugar_binding 42.3 1.5E+02 0.0032 26.0 8.2 48 92-139 173-220 (272)
350 cd06273 PBP1_GntR_like_1 This 42.1 74 0.0016 27.5 6.1 74 63-136 137-215 (268)
351 COG0224 AtpG F0F1-type ATP syn 42.0 1.3E+02 0.0029 27.6 7.7 70 227-296 71-154 (287)
352 PRK15395 methyl-galactoside AB 42.0 2.7E+02 0.0059 25.4 17.1 164 101-274 80-271 (330)
353 PRK14184 bifunctional 5,10-met 41.8 2.8E+02 0.0061 25.4 9.9 131 65-208 52-192 (286)
354 TIGR03568 NeuC_NnaA UDP-N-acet 41.8 3E+02 0.0065 25.8 11.3 37 255-295 300-336 (365)
355 PRK05579 bifunctional phosphop 41.8 1.2E+02 0.0026 29.2 7.7 34 46-79 184-234 (399)
356 PRK14476 nitrogenase molybdenu 41.3 3.5E+02 0.0076 26.4 17.6 194 59-277 181-393 (455)
357 cd03146 GAT1_Peptidase_E Type 41.3 1.6E+02 0.0035 25.3 8.0 78 164-250 17-100 (212)
358 TIGR03566 FMN_reduc_MsuE FMN r 41.1 75 0.0016 26.3 5.7 64 71-134 29-107 (174)
359 cd06375 PBP1_mGluR_groupII Lig 41.1 1E+02 0.0022 29.9 7.4 87 162-251 160-255 (458)
360 PRK04870 histidinol-phosphate 41.1 2.7E+02 0.0058 25.6 10.0 11 132-142 84-94 (356)
361 PRK11249 katE hydroperoxidase 41.1 2.3E+02 0.0051 29.7 10.1 121 177-300 596-739 (752)
362 cd06364 PBP1_CaSR Ligand-bindi 41.1 1.2E+02 0.0026 30.0 7.9 87 162-251 173-267 (510)
363 PRK14179 bifunctional 5,10-met 41.0 2.9E+02 0.0062 25.3 10.0 137 53-207 37-188 (284)
364 COG0655 WrbA Multimeric flavod 40.9 56 0.0012 28.0 5.0 27 220-247 67-100 (207)
365 TIGR00035 asp_race aspartate r 40.8 77 0.0017 27.7 5.9 45 228-276 75-119 (229)
366 PRK14181 bifunctional 5,10-met 40.6 1.9E+02 0.0041 26.5 8.5 148 66-238 48-210 (287)
367 PRK12779 putative bifunctional 40.6 5.1E+02 0.011 28.0 15.2 35 177-213 446-480 (944)
368 PF11360 DUF3110: Protein of u 40.5 69 0.0015 23.7 4.7 55 50-111 23-77 (86)
369 PRK05670 anthranilate synthase 40.4 2.2E+02 0.0048 23.8 9.9 82 58-155 8-93 (189)
370 PRK09288 purT phosphoribosylgl 40.3 3.1E+02 0.0067 25.7 10.5 31 178-208 12-42 (395)
371 PRK13556 azoreductase; Provisi 40.3 77 0.0017 27.1 5.8 58 192-250 25-117 (208)
372 PF00266 Aminotran_5: Aminotra 40.1 91 0.002 29.0 6.7 62 176-239 86-150 (371)
373 PF02525 Flavodoxin_2: Flavodo 40.1 11 0.00023 32.1 0.3 56 191-248 22-104 (199)
374 PRK14173 bifunctional 5,10-met 40.1 1.7E+02 0.0037 26.8 8.1 147 66-238 51-208 (287)
375 PF01276 OKR_DC_1: Orn/Lys/Arg 40.0 32 0.0007 33.2 3.6 63 48-112 104-178 (417)
376 TIGR03590 PseG pseudaminic aci 40.0 2.8E+02 0.006 24.9 19.8 71 50-124 31-102 (279)
377 PRK05647 purN phosphoribosylgl 39.9 1.9E+02 0.0041 24.8 8.1 47 231-279 4-57 (200)
378 PRK06567 putative bifunctional 39.7 1.4E+02 0.003 32.4 8.3 97 129-248 857-954 (1028)
379 cd06350 PBP1_GPCR_family_C_lik 39.4 1.3E+02 0.0029 27.3 7.6 89 162-253 146-242 (348)
380 cd06301 PBP1_rhizopine_binding 39.3 77 0.0017 27.5 5.8 46 92-137 173-220 (272)
381 PLN02369 ribose-phosphate pyro 39.2 3.1E+02 0.0067 25.2 13.2 210 46-282 34-263 (302)
382 PRK14186 bifunctional 5,10-met 39.1 1.7E+02 0.0038 26.9 8.1 147 65-237 53-210 (297)
383 cd00578 L-fuc_L-ara-isomerases 39.1 2.4E+02 0.0053 27.3 9.7 137 62-211 25-198 (452)
384 cd06288 PBP1_sucrose_transcrip 39.1 1.9E+02 0.004 24.9 8.2 74 64-137 137-215 (269)
385 cd06300 PBP1_ABC_sugar_binding 39.1 2E+02 0.0044 24.9 8.5 70 63-137 145-219 (272)
386 PRK05234 mgsA methylglyoxal sy 38.9 1.2E+02 0.0027 24.5 6.4 53 48-110 30-83 (142)
387 PRK11776 ATP-dependent RNA hel 38.7 2.2E+02 0.0047 27.6 9.3 39 165-204 231-269 (460)
388 PRK14168 bifunctional 5,10-met 38.6 1.8E+02 0.0039 26.8 8.1 147 65-236 54-216 (297)
389 COG0683 LivK ABC-type branched 38.6 2.5E+02 0.0054 26.2 9.4 140 101-252 77-227 (366)
390 PF13344 Hydrolase_6: Haloacid 38.5 1.2E+02 0.0025 22.8 5.9 46 152-203 55-101 (101)
391 PF01993 MTD: methylene-5,6,7, 38.4 52 0.0011 29.4 4.3 49 102-159 59-115 (276)
392 cd01080 NAD_bind_m-THF_DH_Cycl 38.4 1.2E+02 0.0026 25.3 6.4 58 46-113 40-98 (168)
393 cd06451 AGAT_like Alanine-glyo 38.4 2E+02 0.0043 26.4 8.6 33 177-209 73-105 (356)
394 TIGR03675 arCOG00543 arCOG0054 38.3 3.6E+02 0.0079 27.6 11.0 41 162-202 574-616 (630)
395 PRK06015 keto-hydroxyglutarate 38.3 2.4E+02 0.0051 24.4 8.3 32 51-82 5-38 (201)
396 PRK13146 hisH imidazole glycer 38.1 1.7E+02 0.0037 25.2 7.6 52 51-115 2-54 (209)
397 cd08187 BDH Butanol dehydrogen 38.1 66 0.0014 30.5 5.4 72 164-241 17-100 (382)
398 PRK10653 D-ribose transporter 37.9 1E+02 0.0022 27.5 6.4 37 101-137 206-242 (295)
399 COG4747 ACT domain-containing 37.9 2.1E+02 0.0045 22.8 8.4 75 47-125 40-130 (142)
400 COG1184 GCD2 Translation initi 37.8 51 0.0011 30.4 4.3 29 52-80 147-177 (301)
401 cd06316 PBP1_ABC_sugar_binding 37.7 2.5E+02 0.0054 24.8 9.0 48 92-139 176-223 (294)
402 TIGR01327 PGDH D-3-phosphoglyc 37.7 3E+02 0.0066 27.4 10.2 165 52-239 1-204 (525)
403 cd06294 PBP1_ycjW_transcriptio 37.6 1.2E+02 0.0026 26.2 6.7 46 92-137 173-221 (270)
404 cd06267 PBP1_LacI_sugar_bindin 37.6 2.5E+02 0.0054 23.7 9.0 88 50-137 116-215 (264)
405 PLN03026 histidinol-phosphate 37.5 90 0.0019 29.4 6.2 61 49-113 126-186 (380)
406 cd06311 PBP1_ABC_sugar_binding 37.5 1.3E+02 0.0029 26.1 7.0 77 63-144 146-227 (274)
407 PRK13581 D-3-phosphoglycerate 37.4 4.3E+02 0.0092 26.4 11.2 166 51-239 1-205 (526)
408 PLN02522 ATP citrate (pro-S)-l 37.3 4.7E+02 0.01 26.8 17.4 204 72-297 56-315 (608)
409 cd06451 AGAT_like Alanine-glyo 37.2 94 0.002 28.6 6.2 61 49-111 73-133 (356)
410 cd08551 Fe-ADH iron-containing 37.2 66 0.0014 30.2 5.2 76 164-241 11-94 (370)
411 PRK12742 oxidoreductase; Provi 37.0 2.1E+02 0.0045 24.3 8.1 32 47-78 3-35 (237)
412 PF07722 Peptidase_C26: Peptid 37.0 44 0.00096 29.0 3.7 43 62-112 26-68 (217)
413 PF12261 T_hemolysin: Thermost 36.8 54 0.0012 27.8 4.1 71 65-142 70-150 (179)
414 cd01575 PBP1_GntR Ligand-bindi 36.4 2.1E+02 0.0046 24.5 8.1 74 63-138 136-216 (268)
415 PRK10307 putative glycosyl tra 36.4 3.7E+02 0.0079 25.2 15.6 180 100-297 169-372 (412)
416 COG0027 PurT Formate-dependent 36.3 1.1E+02 0.0024 28.6 6.1 90 177-276 11-101 (394)
417 TIGR02918 accessory Sec system 36.2 4.4E+02 0.0095 26.0 11.5 186 97-296 265-465 (500)
418 PRK14169 bifunctional 5,10-met 36.1 2.1E+02 0.0046 26.1 8.1 125 66-208 52-187 (282)
419 cd06295 PBP1_CelR Ligand bindi 36.1 1.6E+02 0.0035 25.6 7.3 75 63-139 145-226 (275)
420 PRK01045 ispH 4-hydroxy-3-meth 36.0 3.5E+02 0.0076 24.9 15.5 213 50-300 30-283 (298)
421 cd06284 PBP1_LacI_like_6 Ligan 35.8 1.6E+02 0.0035 25.2 7.2 74 64-137 136-214 (267)
422 PF02606 LpxK: Tetraacyldisacc 35.7 96 0.0021 28.9 6.0 71 46-117 223-294 (326)
423 TIGR00537 hemK_rel_arch HemK-r 35.6 82 0.0018 26.0 5.1 48 166-213 121-169 (179)
424 PRK13479 2-aminoethylphosphona 35.5 1.2E+02 0.0025 28.2 6.6 62 49-111 79-140 (368)
425 COG0647 NagD Predicted sugar p 35.5 79 0.0017 28.7 5.2 86 58-156 25-114 (269)
426 PF02571 CbiJ: Precorrin-6x re 35.4 1.9E+02 0.004 25.9 7.5 90 179-277 1-97 (249)
427 cd06333 PBP1_ABC-type_HAAT_lik 35.3 3.2E+02 0.007 24.3 12.3 170 91-273 56-233 (312)
428 TIGR02990 ectoine_eutA ectoine 35.2 2E+02 0.0043 25.5 7.7 71 227-300 70-145 (239)
429 PRK14188 bifunctional 5,10-met 35.1 3.6E+02 0.0078 24.8 9.6 50 237-287 139-197 (296)
430 cd00615 Orn_deC_like Ornithine 35.0 1.6E+02 0.0035 26.4 7.3 30 177-208 98-127 (294)
431 cd00853 NifX NifX belongs to a 34.9 58 0.0013 24.4 3.7 32 260-291 69-100 (102)
432 PLN02306 hydroxypyruvate reduc 34.8 4.1E+02 0.009 25.4 13.3 180 46-237 11-245 (386)
433 COG0436 Aspartate/tyrosine/aro 34.8 2E+02 0.0043 27.4 8.1 50 161-212 96-145 (393)
434 PRK13525 glutamine amidotransf 34.7 2.4E+02 0.0053 23.7 7.9 79 51-145 2-88 (189)
435 PRK04870 histidinol-phosphate 34.7 1.1E+02 0.0023 28.3 6.2 61 49-113 104-164 (356)
436 PRK14182 bifunctional 5,10-met 34.7 2.4E+02 0.0051 25.8 8.1 153 66-238 52-210 (282)
437 PRK02610 histidinol-phosphate 34.6 1.1E+02 0.0024 28.6 6.3 62 49-112 114-178 (374)
438 cd06296 PBP1_CatR_like Ligand- 34.5 1.4E+02 0.0031 25.7 6.7 75 63-137 137-216 (270)
439 TIGR00288 conserved hypothetic 34.5 2.7E+02 0.0059 23.2 8.9 63 140-208 73-136 (160)
440 PF02670 DXP_reductoisom: 1-de 34.5 34 0.00073 27.4 2.4 62 133-203 9-72 (129)
441 PRK08105 flavodoxin; Provision 34.4 1.9E+02 0.004 23.5 6.9 66 62-138 19-94 (149)
442 cd06271 PBP1_AglR_RafR_like Li 34.4 1.6E+02 0.0035 25.2 7.0 74 63-138 140-220 (268)
443 TIGR01862 N2-ase-Ialpha nitrog 34.3 4.4E+02 0.0096 25.5 17.0 219 59-297 203-434 (443)
444 TIGR02931 anfK_nitrog Fe-only 34.3 4.5E+02 0.0098 25.7 18.4 209 60-278 182-411 (461)
445 COG2265 TrmA SAM-dependent met 34.3 3.6E+02 0.0078 26.3 9.8 102 109-217 323-428 (432)
446 PRK15427 colanic acid biosynth 34.2 2.2E+02 0.0047 27.1 8.3 123 164-297 237-369 (406)
447 COG0647 NagD Predicted sugar p 34.1 1.8E+02 0.004 26.3 7.3 40 232-276 73-113 (269)
448 PF02254 TrkA_N: TrkA-N domain 34.0 2E+02 0.0043 21.5 11.4 104 161-280 7-116 (116)
449 PRK15481 transcriptional regul 34.0 1.1E+02 0.0025 29.2 6.4 55 49-109 164-218 (431)
450 PRK00258 aroE shikimate 5-dehy 34.0 3.2E+02 0.0069 24.5 9.0 153 65-241 24-198 (278)
451 cd06346 PBP1_ABC_ligand_bindin 34.0 3.5E+02 0.0075 24.2 10.0 80 50-132 137-222 (312)
452 PRK07206 hypothetical protein; 33.9 3.7E+02 0.0079 25.4 9.9 30 50-79 2-31 (416)
453 PF02547 Queuosine_synth: Queu 33.7 1.8E+02 0.0038 27.4 7.3 90 178-272 173-264 (341)
454 TIGR01729 taurine_ABC_bnd taur 33.7 1.3E+02 0.0029 27.0 6.5 63 46-113 96-158 (300)
455 TIGR01282 nifD nitrogenase mol 33.6 3.3E+02 0.0071 26.7 9.6 95 46-155 331-425 (466)
456 cd08178 AAD_C C-terminal alcoh 33.5 45 0.00098 31.8 3.5 64 178-241 21-92 (398)
457 PRK14170 bifunctional 5,10-met 33.4 2.4E+02 0.0051 25.9 7.9 125 66-208 53-188 (284)
458 COG1841 RpmD Ribosomal protein 33.4 74 0.0016 21.5 3.5 36 261-296 12-51 (55)
459 cd06340 PBP1_ABC_ligand_bindin 33.4 2E+02 0.0043 26.4 7.8 81 51-133 145-231 (347)
460 TIGR01140 L_thr_O3P_dcar L-thr 33.4 1E+02 0.0022 28.3 5.7 49 50-112 87-135 (330)
461 cd03799 GT1_amsK_like This is 33.3 3.5E+02 0.0076 24.1 12.1 185 100-298 128-327 (355)
462 PF00072 Response_reg: Respons 33.2 1.6E+02 0.0035 21.4 6.0 48 161-215 55-102 (112)
463 TIGR02667 moaB_proteo molybden 33.2 1.8E+02 0.0038 24.1 6.6 49 62-114 24-75 (163)
464 cd06334 PBP1_ABC_ligand_bindin 33.1 4E+02 0.0086 24.6 10.0 97 48-152 138-240 (351)
465 COG1433 Uncharacterized conser 33.0 70 0.0015 25.3 3.9 33 260-293 73-105 (121)
466 KOG2914 Predicted haloacid-hal 33.0 1.8E+02 0.004 25.5 7.0 160 106-281 21-197 (222)
467 TIGR00507 aroE shikimate 5-deh 33.0 3.5E+02 0.0077 24.0 9.3 118 65-204 19-143 (270)
468 COG0569 TrkA K+ transport syst 32.9 3.3E+02 0.0072 23.7 14.4 187 52-250 2-222 (225)
469 PRK11480 tauA taurine transpor 32.9 2.9E+02 0.0064 25.1 8.8 60 177-241 121-182 (320)
470 TIGR01279 DPOR_bchN light-inde 32.9 4.5E+02 0.0097 25.2 11.7 188 63-275 168-363 (407)
471 PRK09492 treR trehalose repres 32.9 2E+02 0.0043 25.7 7.6 69 63-137 196-267 (315)
472 PRK09082 methionine aminotrans 32.7 4.2E+02 0.009 24.7 11.1 31 177-209 114-144 (386)
473 KOG2862 Alanine-glyoxylate ami 32.5 2E+02 0.0044 26.9 7.2 140 48-204 15-169 (385)
474 PRK08057 cobalt-precorrin-6x r 32.5 3.6E+02 0.0079 24.0 14.6 192 50-279 2-221 (248)
475 PRK05294 carB carbamoyl phosph 32.4 5.8E+02 0.013 27.9 12.0 114 177-294 553-702 (1066)
476 TIGR01140 L_thr_O3P_dcar L-thr 32.3 1.9E+02 0.004 26.5 7.4 27 180-208 88-114 (330)
477 COG1366 SpoIIAA Anti-anti-sigm 32.3 80 0.0017 24.2 4.2 58 230-288 52-111 (117)
478 cd06366 PBP1_GABAb_receptor Li 32.2 3.6E+02 0.0078 24.5 9.3 139 102-252 66-216 (350)
479 PRK11480 tauA taurine transpor 32.2 1.2E+02 0.0026 27.7 6.0 63 46-113 118-180 (320)
480 cd06272 PBP1_hexuronate_repres 32.1 1.3E+02 0.0028 25.9 6.0 48 93-140 163-213 (261)
481 PF04392 ABC_sub_bind: ABC tra 32.1 1E+02 0.0023 27.8 5.5 59 190-250 17-80 (294)
482 cd06290 PBP1_LacI_like_9 Ligan 32.1 1.7E+02 0.0037 25.1 6.8 45 93-137 167-214 (265)
483 PRK05939 hypothetical protein; 32.0 2.9E+02 0.0063 26.3 8.8 95 135-238 45-141 (397)
484 COG0079 HisC Histidinol-phosph 32.0 1.2E+02 0.0026 28.6 6.0 58 50-113 99-156 (356)
485 PRK06490 glutamine amidotransf 31.9 3.6E+02 0.0077 23.8 9.4 51 178-235 7-59 (239)
486 PRK15409 bifunctional glyoxyla 31.9 4.2E+02 0.0091 24.5 12.7 167 51-241 3-213 (323)
487 cd00640 Trp-synth-beta_II Tryp 31.9 3.4E+02 0.0074 23.5 9.0 24 103-126 51-74 (244)
488 PLN02605 monogalactosyldiacylg 31.9 4.3E+02 0.0093 24.6 15.4 168 101-297 149-346 (382)
489 PRK05967 cystathionine beta-ly 31.8 4.5E+02 0.0098 25.1 10.0 96 134-238 61-159 (395)
490 cd03795 GT1_like_4 This family 31.8 2.8E+02 0.0061 24.7 8.5 123 163-298 205-332 (357)
491 cd05564 PTS_IIB_chitobiose_lic 31.6 2.2E+02 0.0047 21.2 8.0 64 63-138 17-81 (96)
492 TIGR00177 molyb_syn molybdenum 31.6 79 0.0017 25.4 4.2 49 62-114 29-78 (144)
493 cd06280 PBP1_LacI_like_4 Ligan 31.5 1.2E+02 0.0025 26.3 5.6 47 92-138 162-211 (263)
494 cd01541 PBP1_AraR Ligand-bindi 31.5 2.1E+02 0.0045 24.8 7.3 74 64-137 141-221 (273)
495 CHL00073 chlN photochlorophyll 31.4 1.9E+02 0.0041 28.4 7.4 97 47-155 311-412 (457)
496 PRK14167 bifunctional 5,10-met 31.4 2.5E+02 0.0055 25.9 7.8 126 65-208 52-192 (297)
497 cd01973 Nitrogenase_VFe_beta_l 31.3 5E+02 0.011 25.3 18.9 210 60-279 175-405 (454)
498 PRK12767 carbamoyl phosphate s 31.2 2.4E+02 0.0052 25.5 7.9 29 50-79 1-31 (326)
499 PRK08912 hypothetical protein; 31.2 1.3E+02 0.0027 28.2 6.2 59 49-111 110-168 (387)
500 cd03804 GT1_wbaZ_like This fam 31.2 3.8E+02 0.0083 24.2 9.3 72 222-299 255-327 (351)
No 1
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=4.6e-45 Score=328.07 Aligned_cols=242 Identities=19% Similarity=0.161 Sum_probs=212.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT- 126 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~- 126 (302)
+.|++||||||.+++.++.+.|+++|++++.+|++++++.++...+...+.++.+||||||||+|||++|++.+.+.+.
T Consensus 1 ~~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~ 80 (255)
T PRK05752 1 MSGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQ 80 (255)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCC
Confidence 4699999999999999999999999999999999999998776677777778899999999999999999999877653
Q ss_pred -CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHh--cccC-CCCCCEEEEeCCCcchhhHHHHHHhCCC
Q 022128 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE--LPKN-GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (302)
Q Consensus 127 -~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~--L~~~-~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 202 (302)
.+.+++|||++|+++|+++ |+.++++|..+++++|++. +... ..++++||++||+.+++.|.+.|++.|+
T Consensus 81 ~~~~~~~aVG~~Ta~al~~~------G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 81 PPQQPWFSVGAATAAILQDY------GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CcCCEEEEECHHHHHHHHHc------CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 3689999999999999999 9999998999999999876 3332 1367899999999999999999999999
Q ss_pred eeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 203 EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~--~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
.|.++++|++.+.......+.+.+ +.+|+|+|||+++++ +|++.+.... ....+++|||++|+++++++|++.++
T Consensus 155 ~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~-~~~~~~~~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~ 233 (255)
T PRK05752 155 SVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFE-HLQQLAGADWPELARLPLFVPSPRVAEQARAAGAQTVV 233 (255)
T ss_pred EEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHH-HHHHHhChhHHHhcCceEEEeCHHHHHHHHHcCCCcee
Confidence 999999999987665544444333 579999999999999 9999876431 23578999999999999999999988
Q ss_pred ecCCCChHHHHHHHHHHH
Q 022128 279 YPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 279 v~~~~~~~~ll~~i~~~~ 296 (302)
+++.++.++|+++|.++.
T Consensus 234 ~a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 234 DCRGASAAALLAALRRQA 251 (255)
T ss_pred eCCCCChHHHHHHHHhcc
Confidence 999999999999998764
No 2
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=1.1e-44 Score=326.69 Aligned_cols=249 Identities=17% Similarity=0.180 Sum_probs=212.9
Q ss_pred ccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH
Q 022128 43 SASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (302)
Q Consensus 43 ~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~ 122 (302)
.+..++.|++||||||.++++++.+.|++.|++++.+|++++++..+ ..+...+.++.+||||||||+|||++|+..+.
T Consensus 11 ~~~~~l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~-~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~ 89 (266)
T PRK08811 11 GAATADAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDT-AQARDALRQALAAPIVVFTSPAAVRAAHRLLP 89 (266)
T ss_pred CCCcCCCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCc-hhHHHHHhhcccCCEEEEECHHHHHHHHHHhc
Confidence 34578999999999999999999999999999999999999998754 44556666788999999999999999986553
Q ss_pred HcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCC
Q 022128 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~ 202 (302)
..++.+.+++|||++|+++|+++ |+.++++|+.+++|+|++. ......+++||++||+.+|++|.+.|+++|+
T Consensus 90 ~~~~~~~~~~AVG~~TA~aL~~~------G~~~~~~P~~~~se~Ll~l-~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~ 162 (266)
T PRK08811 90 LQRPARAHWLSVGEGTARALQAC------GIDEVVRPTRMDSEGLLAL-PLAQAPLQAVGLITAPGGRGLLAPTLQQRGA 162 (266)
T ss_pred ccCccCCeEEEECHHHHHHHHHc------CCCceeCCCCCCcHHHHhC-hhhhCCCCEEEEEeCCCcHHHHHHHHHHCCC
Confidence 34456899999999999999999 9999999999999999876 2222367899999999999999999999999
Q ss_pred eeEEEeeeeeecCCCCcHHHHHH--cCCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHHHHHHHHHcCCCeE
Q 022128 203 EVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNV 277 (302)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~Ta~~l~~~G~~~~ 277 (302)
.|+++++|++.+........... -..+|+++|||+++++ +|++.+.+.. ..+..++|||++|++.++++|++.+
T Consensus 163 ~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sav~-~f~~~l~~~~~~~l~~~~~v~is~rtA~~a~~~G~~~v 241 (266)
T PRK08811 163 RILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEALT-LILQQLPDALRRALQQRPVVASSDRLLDAAHAAGFIHV 241 (266)
T ss_pred EEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHHHH-HHHHHhhhhHHHHHhCCCEEEeCHHHHHHHHHcCCCce
Confidence 99999999999876544322111 1468999999999999 9998886531 2357899999999999999999999
Q ss_pred EecCCCChHHHHHHHHHHHHccC
Q 022128 278 YYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 278 ~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
++++.|+.++|++++.+....++
T Consensus 242 ~vA~~~~~~~l~~a~~~~~~~~~ 264 (266)
T PRK08811 242 MRAAGPLPAQLAAAAAAIMTPPR 264 (266)
T ss_pred eeCCCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999998876443
No 3
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=8.9e-42 Score=305.45 Aligned_cols=239 Identities=34% Similarity=0.448 Sum_probs=215.4
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~--- 126 (302)
||+|+||||.++.+++...|++.|++++.+|++++.+..+ ++..+..+..||||+|||+|||++|++.+...+.
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~---l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~ 77 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD---LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDAL 77 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh---HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccc
Confidence 7999999999999999999999999999999999998654 6667777777999999999999999999988764
Q ss_pred CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEE
Q 022128 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 127 ~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 206 (302)
.+.+++|||++|+++|+++ |+.++++|..+++++|+..|......+++|++++|+.+++.|.+.|.+.|++|.+
T Consensus 78 ~~~~i~aVG~~Ta~~l~~~------G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 78 KNKKIAAVGEKTAEALRKL------GIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred ccCeEEEEcHHHHHHHHHh------CCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 4899999999999999999 9999999999999999999998876578999999999999999999999999999
Q ss_pred EeeeeeecCCCCcHHHHHH--cCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeEEecC
Q 022128 207 LNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~--~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~~~~v~~ 281 (302)
+++|++++.....+..... ..++|+|+|||+++++ +|++.++.... ...+++||||.|++.++++|+++++.++
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~-~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~~~~~~~ 230 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVR-ALLALAPESGIEFLERKRVASIGPRTAETLKELGITVDIAAE 230 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHH-HHHHHccccchhHhhCceEEEecHHHHHHHHHcCCcceeccc
Confidence 9999999998874332222 3799999999999999 99999987532 3579999999999999999999988999
Q ss_pred CCChHHHHHHHHHHHHc
Q 022128 282 HPGLEGWVDSILEALRE 298 (302)
Q Consensus 282 ~~~~~~ll~~i~~~~~~ 298 (302)
.++.++|.+++.+...+
T Consensus 231 ~~~~~~l~~al~~~~~~ 247 (248)
T COG1587 231 KPTLEALADALAKLLRE 247 (248)
T ss_pred ccchHHHHHHHHHHhhc
Confidence 99999999999887653
No 4
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=100.00 E-value=1.2e-41 Score=322.55 Aligned_cols=244 Identities=20% Similarity=0.220 Sum_probs=210.2
Q ss_pred CCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHH
Q 022128 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWK 122 (302)
Q Consensus 45 ~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~ 122 (302)
.+||.|++|+|||+. ++.++++.|+++|++++.+|++++++..+...++..+..+ +.||||||||+|||++|++.+.
T Consensus 6 ~~pL~g~rIlvtr~~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l~ 84 (381)
T PRK07239 6 SAPLAGFTVGVTAAR-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAAD 84 (381)
T ss_pred CCCCCCcEEEEeccC-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHHH
Confidence 489999999999986 8999999999999999999999999987666666666555 5799999999999999999887
Q ss_pred HcCC--------CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCC-----cc
Q 022128 123 EAGT--------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-----KA 189 (302)
Q Consensus 123 ~~~~--------~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~-----~~ 189 (302)
+.++ .+.+++|||++|+++|+++ |+.++++|..+++++|++.+.....++++|+++++. ..
T Consensus 85 ~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~~ 158 (381)
T PRK07239 85 GWGLADELLEALSSARLLARGPKATGAIRAA------GLREEWSPASESSAEVLEYLLEEGVAGKRIAVQLHGATDEWEP 158 (381)
T ss_pred HcCChHHHHHHHcCCeEEEECccHHHHHHHc------CCCCccCCCCCccHHHHHHHhcCCCCCCEEEEEcCCCccccCc
Confidence 6653 4889999999999999999 999999999999999999988765578999998766 44
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCc--HHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc---------CCCc
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---------QWSN 256 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~---------~~~~ 256 (302)
+++|.+.|++.|+.|+++++|++++..... ....+.+ +.+|+|+|||+++|+ +|++.+.... ..++
T Consensus 159 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~-~f~~~l~~~~~~~~~~~~~~~~~ 237 (381)
T PRK07239 159 LPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVA-ALLERAREMGLLDQLLAALRTDV 237 (381)
T ss_pred hHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHH-HHHHHHHHcCChHHHHHhhccCC
Confidence 578999999999999999999998764432 2333333 479999999999999 9999886531 1356
Q ss_pred eEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 257 SVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 257 ~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+++||||.|+++|+++|+++ .+|++|+.++|+++|.+++.
T Consensus 238 ~i~aIGp~Ta~al~~~G~~~-~vp~~~t~~~Lv~~i~~~~~ 277 (381)
T PRK07239 238 LAACVGPVTAAPLVRAGVPT-SAPERMRLGALARHITEELP 277 (381)
T ss_pred EEEEECHHHHHHHHHcCCCc-cCCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999997 58999999999999998865
No 5
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=2.2e-41 Score=301.46 Aligned_cols=232 Identities=18% Similarity=0.143 Sum_probs=194.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCc
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 129 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~ 129 (302)
|+||||||.++++++.+.|+++|++++.+|++++++.++ .....+ ...||||||||+|||++|.+...+. .+.+.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~--~~~~~l--~~~~d~iifTS~naV~~~~~~~~~~~~~~~~ 76 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVA--AAFTAL--SEPHGAIAVTSAEAVRHLAALGERLLPHLAL 76 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChh--hhhhhh--cCCcCEEEEECHHHHHHHHhcchhhHHhcCC
Confidence 689999999999999999999999999999999987642 122222 2458999999999999987643221 23578
Q ss_pred eEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 130 ~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+++|||++|+++|+++ |+.. ++|..+++|+|++.+.....++++||++||+.++++|.+.|++.|+.|+++++
T Consensus 77 ~~~aVG~~Ta~~l~~~------G~~~-~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~v 149 (240)
T PRK09189 77 PLFAVGEATAEAAREL------GFRH-VIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAEC 149 (240)
T ss_pred eEEEEcHHHHHHHHHc------CCCC-CcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEE
Confidence 9999999999999999 9984 56778999999998876544678999999999999999999999999999999
Q ss_pred eeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc--C--CCceEEEECHHHHHHHHHcCCCeEEecCCC
Q 022128 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE--Q--WSNSVACIGETTASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~--~--~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~ 283 (302)
|++++.+.....+.+.+ .++|+|+|||+++++ +|++.+.... . .+++++|||++|++++++.|+..++++++|
T Consensus 150 Y~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~-~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~ 228 (240)
T PRK09189 150 YDMLPVMYSPATLSAILGGAPFDAVLLYSRVAAR-RFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMP 228 (240)
T ss_pred EEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHH-HHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCC
Confidence 99998776655444433 479999999999999 9999886421 2 257899999999999999888777789999
Q ss_pred ChHHHHHHHHH
Q 022128 284 GLEGWVDSILE 294 (302)
Q Consensus 284 ~~~~ll~~i~~ 294 (302)
+.++|+++|.+
T Consensus 229 t~~~l~~~l~~ 239 (240)
T PRK09189 229 DEKSLLSLLSK 239 (240)
T ss_pred CHHHHHHHhhh
Confidence 99999998864
No 6
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=9.6e-41 Score=297.37 Aligned_cols=239 Identities=28% Similarity=0.354 Sum_probs=209.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---CC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GT 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~---~~ 126 (302)
+|+||+|||..+++++.+.|+++|++++.+|++++++.++... ...+..+..||+|||||++||++|++.+.+. .+
T Consensus 1 ~~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~ 79 (249)
T PRK05928 1 MMKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWP 79 (249)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCC
Confidence 3899999999999999999999999999999999999865433 3444467889999999999999999988732 24
Q ss_pred CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEE
Q 022128 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 127 ~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 206 (302)
.+.+++|||++|+++|+++ |++++++|..+++++|++.|.+....|++||++||+.++++|.+.|++.|+.|.+
T Consensus 80 ~~~~~~avG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~ 153 (249)
T PRK05928 80 KNKKYAAIGEKTALALKKL------GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDE 153 (249)
T ss_pred CCCEEEEECHHHHHHHHHc------CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeE
Confidence 5899999999999999999 9999999999999999999988644688999999999999999999999999999
Q ss_pred EeeeeeecCCCCcHHHHHH--cCCCCEEEEECcHHHHHHHHHhhhccc----CCCceEEEECHHHHHHHHHcCCCeEEec
Q 022128 207 LNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~--~~~~d~ivftS~s~v~~~~~~~l~~~~----~~~~~i~~IG~~Ta~~l~~~G~~~~~v~ 280 (302)
+++|++++........... ...+|+|+|||+++|+ .|++.+.... ..+.+++|||++|+++++++|+.++++|
T Consensus 154 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~-~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~~ 232 (249)
T PRK05928 154 CEVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVR-AFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIVP 232 (249)
T ss_pred EEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHH-HHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcceec
Confidence 9999999876554333322 2589999999999999 9999887642 2267899999999999999999999999
Q ss_pred CCCChHHHHHHHHHHH
Q 022128 281 THPGLEGWVDSILEAL 296 (302)
Q Consensus 281 ~~~~~~~ll~~i~~~~ 296 (302)
++++.++|+++|.+++
T Consensus 233 ~~~~~~~l~~~l~~~~ 248 (249)
T PRK05928 233 DSADNEALLRALKELL 248 (249)
T ss_pred CCCChHHHHHHHHHhc
Confidence 9999999999998875
No 7
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=2.5e-38 Score=316.48 Aligned_cols=242 Identities=21% Similarity=0.198 Sum_probs=207.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~ 128 (302)
.+|+||||||.++..++.+.|+++|++++.+|++++++..+...+...+..+.+||||||||+|||++|++.+...+..+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 58999999999999999999999999999999999998877667888887889999999999999999999887665568
Q ss_pred ceEEEEChhhHHHHHHHhhccCCCCceecc------------CCCccHHHHHHhcccCC--CCCCEEEEeCCCcchhhHH
Q 022128 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIE 194 (302)
Q Consensus 129 ~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~------------p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~ 194 (302)
++++|||++|+++|+++ |+.++++ |..+++|+|++.+.... ..+++|||+||+++++.|.
T Consensus 82 ~~i~AVG~~Ta~aL~~~------Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~ 155 (656)
T PRK06975 82 LPVAVVGPGSVAALARH------GIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLA 155 (656)
T ss_pred CeEEEECHHHHHHHHHc------CCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHH
Confidence 99999999999999999 9998876 45689999999988654 4689999999999999999
Q ss_pred HHHHhCCCeeEEEeeeeeecCCCCcH---HHHHHc-CCCCEEEEECcHHHHHHHHHhhhcc-------cCCCceEEEECH
Q 022128 195 EGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA-LSIPVVAVASPSAVRSSWVNLISDT-------EQWSNSVACIGE 263 (302)
Q Consensus 195 ~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~-------~~~~~~i~~IG~ 263 (302)
+.|++.|+.|++++||++........ .+.+.+ ..+|+|+|||+++++ +|++.+.++ ...+++++||||
T Consensus 156 ~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~-~f~~la~~~l~~~~~~~l~~~~ivaIgp 234 (656)
T PRK06975 156 ERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVR-NLDELARAHLNPAEIDALKHAPLVAPHA 234 (656)
T ss_pred HHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHH-HHHHHHHhhcCHHHHHHHhCCeEEEeCH
Confidence 99999999999999999864432221 222222 469999999999999 999874321 123578999999
Q ss_pred HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 264 TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 264 ~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+|++.++++|+++++ +..++.++++.++.++...
T Consensus 235 rtA~~a~~~G~~~i~-~a~~~~e~ll~ai~~~~~~ 268 (656)
T PRK06975 235 RIAEQARALGFDRIT-LTGAGDERIVRAFLTWADA 268 (656)
T ss_pred HHHHHHHHcCCCeee-cCCCChHHHHHHHHHHhhc
Confidence 999999999999854 5778899999999988764
No 8
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=100.00 E-value=1.3e-39 Score=287.70 Aligned_cols=219 Identities=30% Similarity=0.430 Sum_probs=188.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEEeChHHHHHHHHHHHHcC-----CCCceEEEEC
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVG 135 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~IifTS~~av~~f~~~l~~~~-----~~~~~i~aVG 135 (302)
++++++|+++|++++.+|++++++..+...+...++.+. .||+|||||+|||++|++.+...+ +.+++++|||
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 468999999999999999999999776677777776666 999999999999999999987332 3588999999
Q ss_pred hhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 136 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 136 ~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
++|+++|+++ |+.++++|. .+++++|++.|.... .+++||++||+.++++|.+.|++.|++|+++.||++ +
T Consensus 81 ~~Ta~~l~~~------G~~~~~~~~~~~~s~~L~~~l~~~~-~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~ 152 (231)
T PF02602_consen 81 PKTAEALREY------GFQPDFVPSSEGSSEGLAELLKEQL-RGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET-P 152 (231)
T ss_dssp HHHHHHHHHT------T-EECEE-TTSSSHHHHHGGHHHCC-TTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-E
T ss_pred HHHHHHHHHc------CCCccccCCCCCCHHHHHHHHHhhC-CCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-c
Confidence 9999999999 999998888 899999999888644 458999999999999999999999999999999999 4
Q ss_pred CCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHH
Q 022128 215 VHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 290 (302)
Q Consensus 215 ~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~--~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~ 290 (302)
......+..+.+ ..+|+|+|||+++++ .|++.+++. ...+.+++|||++|+++++++|+++++++++|+.++|++
T Consensus 153 ~~~~~~~~~~~l~~~~~~~v~ftS~~~~~-~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~~~g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 153 PEELSPELKEALDRGEIDAVVFTSPSAVR-AFLELLKKNGALLKRVPIVAIGPRTAKALRELGFKVDIVAERPTIEALVE 231 (231)
T ss_dssp EHHHHHHHHHHHHHTTTSEEEESSHHHHH-HHHHHSSGHHHHHTTSEEEESSHHHHHHHHHTT-SCSEEESSSSHHHHHH
T ss_pred cccchHHHHHHHHcCCCCEEEECCHHHHH-HHHHHhHhhhhhhhCCEEEEECHHHHHHHHHcCCCceEECCCCChhHhhC
Confidence 444434444433 689999999999999 999999864 245789999999999999999999999999999999985
No 9
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=6.5e-38 Score=276.86 Aligned_cols=231 Identities=32% Similarity=0.456 Sum_probs=203.5
Q ss_pred EEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---CCCCc
Q 022128 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTPNV 129 (302)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~---~~~~~ 129 (302)
||+|||....+.+.+.|+++|++++.+|++++++. +...+...+..+..+|+|||||++||+.|++.+... .+.+.
T Consensus 1 iLi~r~~~~~~~l~~~L~~~G~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPL-DDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCchHHhHHHHHHHHHcCCcEEEeeeEEEecC-ChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 68999999999999999999999999999999986 545566666667789999999999999999998764 35799
Q ss_pred eEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 130 ~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+++|||++|+++|++. |+.+++.|..+++++|++.|......+++|++++|+..++.|.+.|++.|+.|.++++
T Consensus 80 ~~~avG~~Ta~~l~~~------g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~ 153 (239)
T cd06578 80 KIAAVGPKTAEALREA------GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEV 153 (239)
T ss_pred EEEEECHHHHHHHHHc------CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999 9999998889999999999998744689999999999999999999999999999999
Q ss_pred eeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcc---cCCCceEEEECHHHHHHHHHcCCCeEEecCCCC
Q 022128 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT---EQWSNSVACIGETTASAAKRLGLKNVYYPTHPG 284 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~---~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~ 284 (302)
|++.+.+.. +.....+ ..+|+|+|||+++++ .|++.+.+. ...+.+++|||++|+++|+++|++++++++.++
T Consensus 154 Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~-~f~~~~~~~~~~~~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~ 231 (239)
T cd06578 154 YRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVR-NLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPT 231 (239)
T ss_pred EEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHH-HHHHHHhhhhhhhhcCCeEEEECHHHHHHHHHcCCCceeeecCCC
Confidence 999988754 2222222 467899999999999 999998753 234689999999999999999999999999999
Q ss_pred hHHHHHHH
Q 022128 285 LEGWVDSI 292 (302)
Q Consensus 285 ~~~ll~~i 292 (302)
.++|+++|
T Consensus 232 ~~~l~~~i 239 (239)
T cd06578 232 LEALLEAL 239 (239)
T ss_pred hHHHHhhC
Confidence 99999864
No 10
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-34 Score=242.85 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=209.9
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-----
Q 022128 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA----- 124 (302)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~----- 124 (302)
.+|++..... ..+.+...|+.+|.+++.+|++.+... +.++|++.|++..+|-.||||||+.|+++.+++.+.
T Consensus 4 ~~vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~-~l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel~ 82 (260)
T KOG4132|consen 4 VTVLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFV-NLQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETELK 82 (260)
T ss_pred eeEEEecCCCCCCCHHHHHHHhcCCCceeecceeeeec-cHHHHHHHhcCchhhceeEEeChHHHHHHHHHhccccchhh
Confidence 4677777655 678999999999999999999999865 467899999889999999999999999999999732
Q ss_pred -CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
.|....+|+||+.|..+++.. |+.....-...+++.|++.|.++.. +..++|+++|+..|+.|+..|.+.|
T Consensus 83 ~~w~a~~vYtVG~aT~~si~~~------~~l~T~Ge~~gNa~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~G 156 (260)
T KOG4132|consen 83 AAWLAKHVYTVGPATHASIRRL------GFLNTHGEDAGNAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDKG 156 (260)
T ss_pred hHHhhcceeeeccccHHHHHHh------cCccccccccccHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhCC
Confidence 245789999999999999998 6655455456889999999988543 5678999999999999999999999
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEECcHHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCe
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~--~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
+.|+.+.||+++..++...++.+.+ +.+|||+|+||++++ ...+.+.... ....++++|||+|+++|++.|.++
T Consensus 157 ~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~-~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~ 235 (260)
T KOG4132|consen 157 IRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVK-SSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKV 235 (260)
T ss_pred ceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHH-HHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCc
Confidence 9999999999999998766655544 479999999999999 8888887642 234799999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHHccC
Q 022128 277 VYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 277 ~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
..+++.|+.++|++.|+.+.+.++
T Consensus 236 ~~vs~~P~pe~L~~~I~~~~~~~~ 259 (260)
T KOG4132|consen 236 DVVSPAPDPESLADAIELYQRHKG 259 (260)
T ss_pred ceecCCCCHHHHHHHHHhhhhccC
Confidence 999999999999999999988775
No 11
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=3.9e-33 Score=268.83 Aligned_cols=214 Identities=11% Similarity=0.114 Sum_probs=178.5
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccE
Q 022128 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW 105 (302)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~ 105 (302)
+++|++++|++. +||+|++|||||+.+++..+...|+++|++++.+|++++.+.+.. .+.+.++.+|||
T Consensus 235 v~~~~~~~~~~~--------~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~---~~~l~~l~~ydw 303 (474)
T PRK07168 235 VSLRNQIAWKER--------KPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT---LEQINEIFNVNR 303 (474)
T ss_pred hccccccchhhc--------ccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc---HHHHHHhccCCE
Confidence 578899999999 999999999999999999999999999999999999998764432 345667788999
Q ss_pred EEEeChHHHHHHHHHHHHcCCC----CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEE
Q 022128 106 IIITSPEAGSVFLEAWKEAGTP----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (302)
Q Consensus 106 IifTS~~av~~f~~~l~~~~~~----~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~v 181 (302)
|||||+|+|++|++.+.+.+++ ..+++|||++|+++|+++ |+.++ |+.+++|+++.. ... .+++
T Consensus 304 lvFTS~ngV~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~------Gl~~d--p~~~~~e~~l~~-g~~---~~~v 371 (474)
T PRK07168 304 LVFCSAESVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQY------GLLSK--EAKFSSDTTVYL-GRN---INRI 371 (474)
T ss_pred EEEcCHHHHHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhC------CCccC--CcccccceeEEe-ccc---ccce
Confidence 9999999999999999987764 479999999999999999 99985 899999998755 222 2689
Q ss_pred EEeCCCcchhhHHHHHHhCCCe-eEEEeeee--eecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhccc---CCC
Q 022128 182 LYPASAKASNEIEEGLSNRGFE-VVRLNTYT--TEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTE---QWS 255 (302)
Q Consensus 182 L~~rg~~~~~~L~~~L~~~G~~-v~~~~vY~--~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~---~~~ 255 (302)
+++++. .|+. |.+...|+ +........++.+ ..+|.|+|||+++|+ +|++.++... ...
T Consensus 372 l~~~~~------------~g~~~~~~~~~y~~~~~~~~~~~~~l~e--~~~d~iiFtS~ssV~-~f~~~~~~~~~~~~~~ 436 (474)
T PRK07168 372 AFIQEK------------IGAGSYMMTHKYTIDHRFDEVHSRMLSE--FLWDSIVFEGRASID-TFLAEVKRLGFIDIVT 436 (474)
T ss_pred eecccC------------CCCceEEEEEEeeccccccchhhhHHhh--ccCceEEECCHHHHH-HHHHHHHhhCchhhcc
Confidence 999966 5667 99999999 5553322222222 248999999999999 9999987543 235
Q ss_pred ceEEEECHHHHHHHHHcCCCeE
Q 022128 256 NSVACIGETTASAAKRLGLKNV 277 (302)
Q Consensus 256 ~~i~~IG~~Ta~~l~~~G~~~~ 277 (302)
++++||||.|++++.++|+.++
T Consensus 437 ~~~~~iGp~t~~~a~~~G~~~~ 458 (474)
T PRK07168 437 LPFSYTDVPTLHYANKVGFHNI 458 (474)
T ss_pred CceEEeCHHHHHHHHHhCCCcc
Confidence 7899999999999999999874
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.63 E-value=3.2e-15 Score=132.88 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC-
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG- 125 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~- 125 (302)
+.|++||++|+....+.+.+.|++.|+++..+|+|++++.... ......+ ....+|+|+|||+++|+.|++.+...+
T Consensus 123 ~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~ivftS~~~v~~~~~~~~~~~~ 201 (249)
T PRK05928 123 LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARL-QSGEVDAVIFTSPSTVRAFFSLAPELGR 201 (249)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhcccch
Confidence 5799999999999999999999999999999999999876432 2222222 136899999999999999999887654
Q ss_pred ---CCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 126 ---~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
+.+.+++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 202 ~~~~~~~~~~aiG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 202 REWLLSCKAVVIGERTAEALREL------GIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred hHHHhCCeEEEeCHHHHHHHHHc------CCCcceecCCCChHHHHHHHHHh
Confidence 34889999999999999999 99999999999999999887653
No 13
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.60 E-value=2e-14 Score=126.66 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=102.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-- 124 (302)
...+.+|+++|.......+.+.|++.|+++..+|+|+.++.++.+...+.+ ....+|+|+|||+++|+.|++.+.+.
T Consensus 119 ~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l-~~~~~~~iiftS~~~v~~f~~~~~~~~~ 197 (239)
T cd06578 119 DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELL-EEGAIDAVLFTSPSTVRNLLELLGKEGR 197 (239)
T ss_pred CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHH-HcCCCcEEEEeCHHHHHHHHHHHhhhhh
Confidence 367999999999988899999999999999999999999876555555666 33568899999999999999998764
Q ss_pred -CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
.+.+.+++|||+.|+++|++. |++++++|..++.++|++.+
T Consensus 198 ~~~~~~~~~aig~~t~~~l~~~------g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 198 ALLKNVKIAAIGPRTAEALREL------GLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hhhcCCeEEEECHHHHHHHHHc------CCCceeeecCCChHHHHhhC
Confidence 356899999999999999999 99999999889999998754
No 14
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.51 E-value=2.3e-13 Score=129.18 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=99.0
Q ss_pred CCCCCCeEEEeCCC-----CChHHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeChHHHHHH
Q 022128 46 ASNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVF 117 (302)
Q Consensus 46 ~~l~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~l~~~d~IifTS~~av~~f 117 (302)
....|++|++.+.. ...+.+.+.|++.|++|..+|+|++++..+.. .+...+ .-+.+|+|+|||+++|++|
T Consensus 138 ~~~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~stv~~f 216 (381)
T PRK07239 138 EGVAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAI-ASRGLDAVTFTSAPAVAAL 216 (381)
T ss_pred CCCCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHH-HcCCccEEEEcCHHHHHHH
Confidence 34679999998865 33467999999999999999999998754332 333444 2357999999999999999
Q ss_pred HHHHHHcCC---------CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 118 LEAWKEAGT---------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 118 ~~~l~~~~~---------~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
++.+.+.++ .+++++|||+.|+++|+++ |+.+ .+|+.++.++|+++|.+..
T Consensus 217 ~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~------G~~~-~vp~~~t~~~Lv~~i~~~~ 276 (381)
T PRK07239 217 LERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRA------GVPT-SAPERMRLGALARHITEEL 276 (381)
T ss_pred HHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHc------CCCc-cCCCCCCHHHHHHHHHHHh
Confidence 999876432 4678999999999999999 9998 5799999999999987543
No 15
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=99.51 E-value=1.7e-13 Score=123.87 Aligned_cols=114 Identities=23% Similarity=0.332 Sum_probs=96.3
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc-HHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCC
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWS 255 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~ 255 (302)
.|++||+.|.+.....|.+.|++.|+++..+++-+..+.+... ...+..+.++|||+|||+++|+ .|+.........+
T Consensus 17 ~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NAV~-~~~~~~~~~~~~~ 95 (266)
T PRK08811 17 AAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAAVR-AAHRLLPLQRPAR 95 (266)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHHHH-HHHHHhcccCccC
Confidence 6899999999999999999999999999999998887765421 1223445789999999999999 9986553222346
Q ss_pred ceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022128 256 NSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 291 (302)
Q Consensus 256 ~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~ 291 (302)
.+++|||++|+++|+++|+.++++|+..+.++|++.
T Consensus 96 ~~~~AVG~~TA~aL~~~G~~~~~~P~~~~se~Ll~l 131 (266)
T PRK08811 96 AHWLSVGEGTARALQACGIDEVVRPTRMDSEGLLAL 131 (266)
T ss_pred CeEEEECHHHHHHHHHcCCCceeCCCCCCcHHHHhC
Confidence 799999999999999999999999999999999987
No 16
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.47 E-value=4.7e-13 Score=120.32 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=102.3
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-- 124 (302)
..|++||++|+....+.+.+.|++.|+++..+++|+.++... ...+.+.+ ..+.+|+|+|||+++++.|++.+...
T Consensus 128 ~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~~~~~~~~~~~~~~ 206 (255)
T PRK05752 128 VPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRV-EAERLNGLVVSSGQGFEHLQQLAGADWP 206 (255)
T ss_pred CCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhChhHH
Confidence 468899999999999999999999999999999999876542 34455555 34679999999999999999877542
Q ss_pred CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
.+.+.+++|||+.|++++++. |+..+.+++.++.++|++.|.+..
T Consensus 207 ~~~~~~~~~ig~~ta~a~~~~------G~~~~~~a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 207 ELARLPLFVPSPRVAEQARAA------GAQTVVDCRGASAAALLAALRRQA 251 (255)
T ss_pred HhcCceEEEeCHHHHHHHHHc------CCCceeeCCCCChHHHHHHHHhcc
Confidence 246789999999999999999 998888888999999999887643
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.45 E-value=1.3e-13 Score=121.70 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=97.8
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-- 124 (302)
.+.+.+||+.|.......+.+.|++.|++|..+++|+..+......+.+.+ ...++|+|+|||+.+++.|++.+.+.
T Consensus 114 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~~~v~ftS~~~~~~~~~~~~~~~~ 192 (231)
T PF02602_consen 114 QLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEAL-DRGEIDAVVFTSPSAVRAFLELLKKNGA 192 (231)
T ss_dssp CCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHH-HHTTTSEEEESSHHHHHHHHHHSSGHHH
T ss_pred hCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHH-HcCCCCEEEECCHHHHHHHHHHhHhhhh
Confidence 456788999999999999999999999999999999992222234455555 33789999999999999999987654
Q ss_pred CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHH
Q 022128 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (302)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~ 169 (302)
.+.+++++|+|+.|++++++. |++++.+|+.++.++|++
T Consensus 193 ~~~~~~~~~ig~~ta~~l~~~------g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 193 LLKRVPIVAIGPRTAKALREL------GFKVDIVAERPTIEALVE 231 (231)
T ss_dssp HHTTSEEEESSHHHHHHHHHT------T-SCSEEESSSSHHHHHH
T ss_pred hhhCCEEEEECHHHHHHHHHc------CCCceEECCCCChhHhhC
Confidence 457999999999999999999 999999999999999874
No 18
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.45 E-value=1.2e-12 Score=126.78 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=155.9
Q ss_pred CCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEee---------eCC-----------------Cc-hHHH-
Q 022128 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHA---------QGP-----------------DT-DRLS- 94 (302)
Q Consensus 48 l~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~---------~~~-----------------~~-~~l~- 94 (302)
..|++|++....+ ...+..+.|.+.|+++..+|-+.-. |.. +. +.+.
T Consensus 78 ~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~ 157 (474)
T PRK07168 78 KEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKY 157 (474)
T ss_pred hCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhH
Confidence 3688888876543 3457778899999999888866511 110 00 0000
Q ss_pred HHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-CCceEEEEChhhH----------HHHHHHhhccCCCCc---eeccCC
Q 022128 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAGTA----------SIFEEVIQSSKCSLD---VAFSPS 160 (302)
Q Consensus 95 ~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~-~~~~i~aVG~~Ta----------~~l~~~~~~~~~G~~---~~~~p~ 160 (302)
..+. ..-..++++.........+.|.+.|+ ++.+++++-..|. +.+.+.... .++. +.++.+
T Consensus 158 ~~l~--~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~--~~~~~pavivvG~ 233 (474)
T PRK07168 158 NSSH--NSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKN--ENISNPSMTIVGD 233 (474)
T ss_pred HHhc--CCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHh--cCCCCCEEEEECh
Confidence 1121 11256777777777777888888775 4666655544333 333211000 0332 111211
Q ss_pred CccHHHHHHhcccC---CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 161 KATGKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 161 ~~~~e~L~~~L~~~---~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
.-.+.+.+..+ ...|++||++|.......|.+.|++.|++|.++++-+..+.+.. ...++.+.++|||+|||+
T Consensus 234 ---vv~~~~~~~~~~~~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~ 309 (474)
T PRK07168 234 ---VVSLRNQIAWKERKPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSA 309 (474)
T ss_pred ---HhccccccchhhcccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCH
Confidence 22222233322 22689999999999999999999999999999999997654433 345566789999999999
Q ss_pred HHHHHHHHHhhhcccC----CCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022128 238 SAVRSSWVNLISDTEQ----WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 291 (302)
Q Consensus 238 s~v~~~~~~~l~~~~~----~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~ 291 (302)
++|+ .|++.+.+... ...+++|||+.|+++|+++|+..+ |++++.+++++.
T Consensus 310 ngV~-~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~Gl~~d--p~~~~~e~~l~~ 364 (474)
T PRK07168 310 ESVE-ILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQYGLLSK--EAKFSSDTTVYL 364 (474)
T ss_pred HHHH-HHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhCCCccC--CcccccceeEEe
Confidence 9999 99999987531 237899999999999999999884 888998888765
No 19
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.42 E-value=2.4e-12 Score=114.66 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-- 124 (302)
..|++||+.|+....+.+.+.|++.|+++..+++|+.++.+. ...+.+.+ .-.++|+|+|||+.+++.|++.+...
T Consensus 116 ~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~i~f~S~~~~~~f~~~~~~~~~ 194 (240)
T PRK09189 116 APTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAIL-GGAPFDAVLLYSRVAARRFFALMRLSIA 194 (240)
T ss_pred CCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHH-hcCCCCEEEEeCHHHHHHHHHHHhhhcC
Confidence 368899999999888999999999999999999999987653 33455555 33579999999999999999988643
Q ss_pred --CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 125 --GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 125 --~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
++.+.+++|||+.|++++++. |.....+++.++.++|++.|..
T Consensus 195 ~~~l~~~~~v~Ig~~ta~al~~~------~~~~~~ia~~~t~~~l~~~l~~ 239 (240)
T PRK09189 195 PPADEKTRFLCLSARVAAALPAS------LRAQALIAAMPDEKSLLSLLSK 239 (240)
T ss_pred cccccccCeEEeCHHHHHHHhhc------cccceeecCCCCHHHHHHHhhh
Confidence 235788999999999999887 6555556888999999887653
No 20
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.40 E-value=2.7e-12 Score=114.95 Aligned_cols=118 Identities=24% Similarity=0.301 Sum_probs=102.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC--
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-- 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~-- 126 (302)
|++|++.|+....+.+.+.|...|+++..+++|+.++.... ..+...+ ...++|+|+|||+.+|+.|++.+...+.
T Consensus 123 ~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~ 201 (248)
T COG1587 123 GKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELL-KLGEVDAVVFTSSSAVRALLALAPESGIEF 201 (248)
T ss_pred CCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHH-HhCCCCEEEEeCHHHHHHHHHHccccchhH
Confidence 79999999999999999999999999999999999987643 2333444 6688999999999999999999877553
Q ss_pred -CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 127 -~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
.+.+++|||+.|++.++++ |+++++.+...+.+.|.+.+...
T Consensus 202 ~~~~~v~~IG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~al~~~ 244 (248)
T COG1587 202 LERKRVASIGPRTAETLKEL------GITVDIAAEKPTLEALADALAKL 244 (248)
T ss_pred hhCceEEEecHHHHHHHHHc------CCcceecccccchHHHHHHHHHH
Confidence 4789999999999999999 99998888888888888877643
No 21
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.34 E-value=1.8e-11 Score=104.64 Aligned_cols=123 Identities=15% Similarity=0.251 Sum_probs=107.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
+.+-.-.|++-.....+.+.+.|.+.|+.|..+-+|+++..+| ..++..+++.-+..|||+|.||+++....+++....
T Consensus 130 ~~~alPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~ 209 (260)
T KOG4132|consen 130 DKRALPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSN 209 (260)
T ss_pred CcccCceEEEcccchhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhc
Confidence 3344457888888889999999999999999999999999987 467888886666899999999999999999987754
Q ss_pred --CCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 126 --TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 126 --~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
.+++|+++||+.|+++|++. |++++.+...++.+.|+..|...+
T Consensus 210 ~s~~~~k~aaIGPtT~kaL~~~------g~~~~~vs~~P~pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 210 RSGDHLKLAAIGPTTRKALEDL------GVKVDVVSPAPDPESLADAIELYQ 255 (260)
T ss_pred cchhheeEEEeCcchHHHHHHc------CCCcceecCCCCHHHHHHHHHhhh
Confidence 47999999999999999999 999999988999999999887654
No 22
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.33 E-value=1.4e-11 Score=124.29 Aligned_cols=118 Identities=19% Similarity=0.216 Sum_probs=99.4
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcH--HHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCC
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWS 255 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~ 255 (302)
+.+||+.|+......|.+.|++.|+++..+++++..+.+.... ..+..+..+|+|+|||+++|+ +|++.+......+
T Consensus 3 ~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~-~~~~~l~~~~~~~ 81 (656)
T PRK06975 3 AFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVD-RALARLDAIWPHA 81 (656)
T ss_pred CCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHH-HHHHHHHhhCccC
Confidence 5799999999999999999999999999999999988765322 233446799999999999999 9998876532235
Q ss_pred ceEEEECHHHHHHHHHcCCCeEEe------------cCCCChHHHHHHHHHHH
Q 022128 256 NSVACIGETTASAAKRLGLKNVYY------------PTHPGLEGWVDSILEAL 296 (302)
Q Consensus 256 ~~i~~IG~~Ta~~l~~~G~~~~~v------------~~~~~~~~ll~~i~~~~ 296 (302)
++++|||+.|+++|+++|+.++++ ++.++.++|++.+....
T Consensus 82 ~~i~AVG~~Ta~aL~~~Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~ 134 (656)
T PRK06975 82 LPVAVVGPGSVAALARHGIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAF 134 (656)
T ss_pred CeEEEECHHHHHHHHHcCCCCceeeccccccccCCCCCccchHHHHHhHHHhc
Confidence 799999999999999999997766 35679999999988754
No 23
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=96.84 E-value=0.064 Score=47.29 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|+++...+. . .+.+...+.++. -.+.|+||+++..........+.+ .++++++++...
T Consensus 20 ~~~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~ipvV~~~~~~--- 88 (268)
T cd06298 20 GIDDIATMYKYNIILSNS---D--NDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKR---SPTPVVLAGSVD--- 88 (268)
T ss_pred HHHHHHHHcCCeEEEEeC---C--CCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHHhc---CCCCEEEEcccc---
Confidence 345677888998876642 1 122222222221 257999999865433334444443 467889888642
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-h-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
... .+.. +.++. ..+..+++.|.+. ..++|+++.+... . .-+.+.+++.|..+....++..
T Consensus 89 -~~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~ 158 (268)
T cd06298 89 -EDN------ELPS-VNIDYKKAAFEATELLIKN--GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEG 158 (268)
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHc--CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 111 2221 22222 2345566666653 3478999987554 1 3456778888876543333332
Q ss_pred ecCCCCcHHHHHH-cC--CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ-AL--SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~~--~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
........+..+. +. .+++|+.++...+. .+++.+.+... .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 159 DYTYESGYELAEELLEDGKPTAAFVTDDELAI-GILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCChhHHHHHHHHHhcCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCccceEEEeeccH
Confidence 2111111122222 22 28999999988888 77788776532 35778888754
No 24
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=96.59 E-value=0.082 Score=47.01 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=98.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+.+.+++.|+++..+..-.- +...+.+.+ .-.+.|+||+++...-...++.+.+ .+++++++|.....
T Consensus 32 i~~~~~~~g~~~~v~~~~~~----~~~~~~~~l-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~---- 99 (275)
T cd06295 32 IADALAERGYDLLLSFVSSP----DRDWLARYL-ASGRADGVILIGQHDQDPLPERLAE---TGLPFVVWGRPLPG---- 99 (275)
T ss_pred HHHHHHHcCCEEEEEeCCch----hHHHHHHHH-HhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCccCC----
Confidence 56677788999876543111 122343434 2257899998765432333444433 47899999865321
Q ss_pred HhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 145 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 145 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
. .+.. +.++. ..++.+++.|.+.. .++|+++.+.... .-+.+.+++.|..+....++......
T Consensus 100 ~------~~~~-V~~d~~~~g~~~a~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~ 170 (275)
T cd06295 100 Q------PYCY-VGSDNVGGGRLATEHLLARG--RRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTE 170 (275)
T ss_pred C------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCH
Confidence 1 2221 22222 23455556665543 4689998875441 33566777777554333333221111
Q ss_pred CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 217 ~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
......... + ..+++|++++...+. .+++.+.+... .++.+++++....
T Consensus 171 ~~~~~~~~~~l~~~~~~~ai~~~~~~~a~-g~~~~l~~~g~~ip~~i~ii~~d~~~~ 226 (275)
T cd06295 171 ESGRAAMRALLERGPDFDAVFAASDLMAL-GALRALREAGRRVPEDVAVVGFDDIPL 226 (275)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHhCCCCccceEEEeeCCchH
Confidence 111112222 2 357999999888877 67777765432 3567888876543
No 25
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=96.53 E-value=0.11 Score=45.74 Aligned_cols=179 Identities=10% Similarity=0.023 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|+++..++... +.+.....++. -.++|+||+++.......++.+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~ipvV~~~~~~~-- 89 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDE-----NPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLK---RGIPVVFVDREIT-- 89 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCC-----CHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHh---CCCCEEEEecccC--
Confidence 45566788899888665321 22222222222 257899999875433223444444 4688999987542
Q ss_pred HHHHhhccCCCCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +....+. ...+++.|.+. ..++|+++.|.... .-+.+.+++.|.++....++...
T Consensus 90 --~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06299 90 --GS------PIPF-VTSDPQPGMTEAVSLLVAL--GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGG 158 (265)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecC
Confidence 12 3321 1222222 23344455443 34689988775532 34667788888554332222221
Q ss_pred cCCCCcHHHHHH-cC-CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-AL-SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~~-~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+.... +. .+++|+.++...+. ..+..+.+... .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~av~~~~d~~a~-gv~~al~~~g~~vp~dv~v~g~d~~ 213 (265)
T cd06299 159 YSQESGYAGATKLLDQGATAIIAGDSMMTI-GAIRAIHDAGLVIGEDISLIGFDDL 213 (265)
T ss_pred cchHHHHHHHHHHHcCCCCEEEEcCcHHHH-HHHHHHHHhCCCCCcceeEEEeCCH
Confidence 111111222222 22 38999999998887 77777776432 35778888854
No 26
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=96.46 E-value=0.11 Score=45.66 Aligned_cols=183 Identities=10% Similarity=0.015 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.+++.|++++..+.-. .+ .....+.+.+ ...+.|+||+++...-..+.+.+.+ .++++++++....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~---- 89 (268)
T cd01575 20 GISDVLEAAGYQLLLGNTGY-SP-EREEELLRTL-LSRRPAGLILTGLEHTERTRQLLRA---AGIPVVEIMDLPP---- 89 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC-Cc-hhHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHHh---cCCCEEEEecCCC----
Confidence 45567788899987765421 11 1111122222 1257999999886543344444444 3678888875321
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.. ............+..+++.|.+.. .+++.++.+... ..-+.+.|++.|..+....++......
T Consensus 90 ~~------~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~~ 161 (268)
T cd01575 90 DP------IDMAVGFSHAEAGRAMARHLLARG--YRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSSF 161 (268)
T ss_pred CC------CCCeEEeCcHHHHHHHHHHHHHCC--CCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCCH
Confidence 11 111111112233455556666543 467888877654 234566778887644332222211111
Q ss_pred CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHHH
Q 022128 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGETT 265 (302)
Q Consensus 217 ~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~T 265 (302)
....+..+. + ..+++|+..|...+. .+++.+.+.. ..++.+++++...
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~~p~di~vig~d~~~ 216 (268)
T cd01575 162 ALGRELLAELLARWPDLDAVFCSNDDLAL-GALFECQRRGISVPEDIAIAGFGDLE 216 (268)
T ss_pred HHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHhCCCCCcceEEEecCCch
Confidence 111122222 2 358999999988887 7777776543 2356788887654
No 27
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=96.44 E-value=0.079 Score=46.71 Aligned_cols=182 Identities=9% Similarity=0.034 Sum_probs=98.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++..... +.....+.+ .-.++|+||+++...-......+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~------~~~~~~~~l-~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 85 (261)
T cd06272 20 GINQAISKNGYNMNVSITP------SLAEAEDLF-KENRFDGVIIFGESASDVEYLYKIK---LAIPVVSYGVDYD---- 85 (261)
T ss_pred HHHHHHHHcCCEEEEEecc------cHHHHHHHH-HHcCcCEEEEeCCCCChHHHHHHHH---cCCCEEEEcccCC----
Confidence 3445667889988776543 122222333 2247999998876543333343433 4678999987542
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
. ++..........+..+++.|.+.. .++|+++.+.... .-+.+.+++.|..+....++......
T Consensus 86 -~------~~~~V~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
T cd06272 86 -L------KYPIVNVDNEKAMELAVLYLAEKG--HKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSA 156 (261)
T ss_pred -C------CCCEEEEChHHHHHHHHHHHHHcC--chhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCH
Confidence 2 222111112233455666666543 4678888654431 24556777777543322233211111
Q ss_pred CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHHHHHHH
Q 022128 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGETTASAA 269 (302)
Q Consensus 217 ~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~Ta~~l 269 (302)
....+.... + ..+++|+.++-..+. .++..+.+.. ..++.+++++......+
T Consensus 157 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~vp~dv~vvg~d~~~~~~~ 215 (261)
T cd06272 157 EGGDNAAKKLLKESDLPTAIICGSYDIAL-GVLSALNKQGISIPEDIEIISYDNIPQMAI 215 (261)
T ss_pred HHHHHHHHHHHcCCCCCCEEEECCcHHHH-HHHHHHHHhCCCCCCceEEEeeCChhHHhh
Confidence 111122222 2 247999998888777 6777776543 24678888887655443
No 28
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=96.39 E-value=0.11 Score=45.84 Aligned_cols=180 Identities=12% Similarity=0.062 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.+++.|++++... . ..+.+...+.++. -.+.|+||+++...-...++.+.+ .+++++++|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~iPvv~~~~~~~- 89 (268)
T cd06273 19 QAFQETLAAHGYTLLVAS---S--GYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLAR---RGVPYVATWNYSP- 89 (268)
T ss_pred HHHHHHHHHCCCEEEEec---C--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEcCCCC-
Confidence 346667888998887532 1 1122211122221 146899999876543334444443 4678888886421
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
.. .+.. +..+. ..+..+++.|.+. ..++|+++.+... ..-+.+.|++.|+.+....++.
T Consensus 90 ---~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (268)
T cd06273 90 ---DS------PYPC-VGFDNREAGRLAARHLIAL--GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVE 157 (268)
T ss_pred ---CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeee
Confidence 11 2211 12222 2344455666654 3468998875431 2345677888886654433443
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.........+.... + ..+++|+.++...+. .+++.+.+... .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~-~~~~~l~~~g~~~p~~i~vig~d~~ 216 (268)
T cd06273 158 APYSIADGRAALRQLLEQPPRPTAVICGNDVLAL-GALYEARRLGLSVPEDLSIVGFDDI 216 (268)
T ss_pred CCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHH-HHHHHHHHcCCCCCCceEEEecCCh
Confidence 22111111122222 2 358999999988887 77777766432 34567777643
No 29
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=96.27 E-value=0.11 Score=45.20 Aligned_cols=185 Identities=11% Similarity=0.070 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEChhhHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~-f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
..+.+.+++.|+++...+.-... ....+.+++.+ . .++|+||+.+...-.. .+..+.+ .+++++.++.....
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~~~-~-~~~d~ii~~~~~~~~~~~~~~l~~---~~ip~v~~~~~~~~- 91 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQNDA-EKQLSALENLI-A-RGVDGIIIAPSDLTAPTIVKLARK---AGIPVVLVDRDIPD- 91 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCH-HHHHHHHHHHH-H-cCCCEEEEecCCCcchhHHHHhhh---cCCCEEEeccCCCC-
Confidence 34556677788877655432110 00011222322 2 4789999877553332 2333333 46889888876543
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. .+..........+..+++.|.+.. .++|+++.+... ...+.+.+++.| .+.....+....
T Consensus 92 --~~------~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (264)
T cd01537 92 --GD------RVPSVGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDALKEAG-PIEIVLVQEGDW 160 (264)
T ss_pred --Cc------ccceEecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHHHHcC-CcChhhhccCCC
Confidence 11 221111222234555666666543 468888877543 355667777777 222222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
........... + .++|+|+.++...+. .+.+.+.+... .++.+++.+....
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~-~~~~~~~~~g~~i~~~i~i~~~d~~~~ 218 (264)
T cd01537 161 DAEKGYQAAEELLTAHPDPTAIFAANDDMAL-GALRALREAGLRVPDDISVIGFDGTPE 218 (264)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH-HHHHHHHHhCCCCCCCeEEEeecCccH
Confidence 11111112222 2 238888888877777 67777765432 3466776664443
No 30
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=96.20 E-value=0.26 Score=43.77 Aligned_cols=219 Identities=14% Similarity=0.054 Sum_probs=108.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++....-.-. ....+.+...+ -.++|+||+.+.+. +...++.+.+ .+++++.++..-..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 92 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQ-ENQISAIRSFI--AQGVDVIILAPVVETGWDPVLKEAKA---AGIPVILVDRGVDV 92 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCH-HHHHHHHHHHH--HcCCCEEEEcCCccccchHHHHHHHH---CCCCEEEEecCcCC
Confidence 44667778899999976543210 00011222322 25699999977542 2444555544 36788888853110
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCC-CeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRG-FEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G-~~v~~~~vY~ 211 (302)
.... ..+ ..+.++.+ .+..+++.|.+.....++++++.|.... .-+.+.|++.+ ..+. .++.
T Consensus 93 -~~~~-----~~~-~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~--~~~~ 163 (273)
T cd06309 93 -KDDS-----LYV-TFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKIV--ASQT 163 (273)
T ss_pred -ccCc-----cee-eEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEe--eccC
Confidence 0000 011 11222322 2333445555442234689999775432 34566777663 3322 2222
Q ss_pred eecCCCCcHHHHHH-c---C-CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH--HHHHHcCCCeEEecC
Q 022128 212 TEPVHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNVYYPT 281 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~-~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta--~~l~~~G~~~~~v~~ 281 (302)
.........+.... + . .+++|+.++-..+. ..+..+.+... .++.+++++.... ..+..-.+..+....
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~aI~~~~d~~a~-g~~~a~~~~g~~ip~di~iig~d~~~~~~~~~~~~~lt~~~~~~ 242 (273)
T cd06309 164 GDFTRAKGKEVMEALLKAHGDDIDAVYAHNDEMAL-GAIQAIKAAGKKPGKDIKIVSIDGTKDAFQAMADGKLNATVECN 242 (273)
T ss_pred CcccHHHHHHHHHHHHHhCCCCccEEEECCcHHHH-HHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCceEEEEecC
Confidence 11111111111112 2 2 57888888888877 67777766432 3567888865543 345554454443332
Q ss_pred CCChHHHHHHHHHHHH
Q 022128 282 HPGLEGWVDSILEALR 297 (302)
Q Consensus 282 ~~~~~~ll~~i~~~~~ 297 (302)
..--...++.+.+.+.
T Consensus 243 ~~~g~~a~~~l~~~i~ 258 (273)
T cd06309 243 PLFGPLAFDTLEKYLA 258 (273)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 2222334555555553
No 31
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=96.20 E-value=0.12 Score=45.45 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+++.......- ....+.+.+.+ .-.++|+||+++.+.-....+.+.+ .+++++++|.....
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~-- 94 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD--EDPLEVYRRLV-ESGLVDGVIISRTRPDDPRVALLLE---RGFPFVTHGRTELG-- 94 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc--HHHHHHHHHHH-HcCCCCEEEEecCCCCChHHHHHHh---cCCCEEEECCcCCC--
Confidence 3456667888999877754221 00112233333 2256899999875432222333333 46788888864311
Q ss_pred HHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. .+.. +.... ..+...++.|.+. ..++++++.+.... .-+.+.+++.|..+....++....
T Consensus 95 --~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 163 (268)
T cd06271 95 --D------PHPW-VDFDNEAAAYQAVRRLIAL--GHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGDM 163 (268)
T ss_pred --C------CCCe-EeeCcHHHHHHHHHHHHHc--CCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCCC
Confidence 1 2221 22222 2334455555544 34689988765432 345567777776653333433221
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
......+..+. + ..+++|+..+...+. .+++.+++... .++.+++++..-.
T Consensus 164 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vp~~i~iig~d~~~~ 221 (268)
T cd06271 164 TEEGGYAAAAELLALPDRPTAIVCSSELMAL-GVLAALAEAGLRPGRDVSVVGFDDSPP 221 (268)
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHhCCCCCcceeEEEecCchH
Confidence 11111122222 2 348999999988887 77777766532 2467777765533
No 32
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=96.18 E-value=0.28 Score=43.01 Aligned_cols=191 Identities=16% Similarity=0.127 Sum_probs=99.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++..+.- .+.+...+.+++ ..++|+||+++..........+.+ .+++++.+|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~---~~ipvv~~~~~~~- 89 (259)
T cd01542 19 KGILAALYENGYQMLLMNTN-----FSIEKEIEALELLARQKVDGIILLATTITDEHREAIKK---LNVPVVVVGQDYP- 89 (259)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeccCC-
Confidence 34556777889888654321 122222222222 257999999875433334444443 3578999986431
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. +..........+..+++.|.+. ..++++++.+... ..-+.+.+++.|. ....++..
T Consensus 90 ---~--------~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~~ 154 (259)
T cd01542 90 ---G--------ISSVVYDDYGAGYELGEYLAQQ--GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVET 154 (259)
T ss_pred ---C--------CCEEEECcHHHHHHHHHHHHHc--CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeeec
Confidence 1 1111111223345566666653 3468888865421 1345677777776 11122222
Q ss_pred ecCCCCcHHHHHH-c-CC-CCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeEE
Q 022128 213 EPVHHVDQTVLKQ-A-LS-IPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~-~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
........+.... + .. +++|+.++-..+. .+++.+.+.+. .++.++.++..-...+..-++..+.
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~i~~~~d~~a~-g~~~~l~~~g~~vp~di~v~g~d~~~~~~~~~~~l~ti~ 225 (259)
T cd01542 155 DFSYESAYEAAQELLEPQPPDAIVCATDTIAL-GAMKYLQELGRRIPEDISVAGFGGYELSSVVTPSLTTVD 225 (259)
T ss_pred cCchhhHHHHHHHHhcCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEecCCchhhccccCCceEEe
Confidence 1111111122222 2 22 7999999988887 77777766532 3567888876533333333444433
No 33
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=96.05 E-value=0.29 Score=42.98 Aligned_cols=182 Identities=12% Similarity=0.086 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|+.++.... ..+.......++. -.++|+||+.+...-...++.+.+ .+++++++|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~---~~ipvV~~~~~~~- 89 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNS-----DNDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAK---NGKPVVLVDRKIP- 89 (267)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhc---CCCCEEEEcCCCC-
Confidence 3455677788988865432 1122222223322 257899999875432222343333 4688999986532
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++..........++.+++.|.+.. .++|+++.+... ..-+.+.+++.|.......+...
T Consensus 90 ---~~------~~~~v~~d~~~~g~~~~~~l~~~g--~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 158 (267)
T cd06283 90 ---EL------GVDTVTLDNYEAAKEAVDHLIEKG--YERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEID 158 (267)
T ss_pred ---CC------CCCEEEeccHHHHHHHHHHHHHcC--CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEec
Confidence 12 332212222234566667776543 367888865432 13456667777743322112111
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
........+..+. + ..+++|+.+|...+. .+++.+.+... .++.+++++..-
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~vp~di~v~g~d~~~ 217 (267)
T cd06283 159 DEDADELDERLRQLLNKPKKKTAIFAANGLILL-EVLKALKELGIRIPEDVGLIGFDDTE 217 (267)
T ss_pred ccchHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCccceEEEEeCCcc
Confidence 1111111122222 2 248999999988888 77777766532 246778887653
No 34
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.02 E-value=0.28 Score=39.82 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=70.1
Q ss_pred CCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHHH
Q 022128 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~~ 245 (302)
+.+||+.+.... ...+.-.|+..|++|..+-. ..+.+++.+.. .++|+|.+++.. .++ .+.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~------~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~-~~~ 75 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV------MTSQEEFIDAAIETDADAILVSSLYGHGEIDCR-GLR 75 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHH-HHH
Confidence 356666655443 34566788999988754433 12223333332 478887776632 334 455
Q ss_pred HhhhcccCCCceEEEECHH---------HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 246 NLISDTEQWSNSVACIGET---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~IG~~---------Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+.+++....+.++++-|.- ..+.++++|+..++ ....+.+.+++.|.+.++.
T Consensus 76 ~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf-~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 76 EKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVF-PPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred HHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEE-CcCCCHHHHHHHHHHHhcc
Confidence 5555443345677776753 22589999998876 4455999999999988764
No 35
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.87 E-value=0.6 Score=40.93 Aligned_cols=179 Identities=12% Similarity=0.127 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+.. ... .++.+.+ .+++++.++....
T Consensus 20 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~---~~ipvV~~~~~~~ 90 (268)
T cd06289 20 GLEEVLEEAGYTVFLANS-----GEDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAE---SGIPVVLVAREVA 90 (268)
T ss_pred HHHHHHHHcCCeEEEecC-----CCChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHh---cCCCEEEEeccCC
Confidence 344567788987754321 1122222222222 2568999997642 333 3343433 4678888875432
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
. . ++.. +..+. ..++.+++.|.+. ..++|+++.+... ..-+.+.+++.|..+....++.
T Consensus 91 ~----~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (268)
T cd06289 91 G----A------PFDY-VGPDNAAGARLATEHLISL--GHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVE 157 (268)
T ss_pred C----C------CCCE-EeecchHHHHHHHHHHHHC--CCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEe
Confidence 1 1 2221 12222 2344455556554 2467888876543 2445667777775443322332
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.........+.... + ..+++|+.++...+. .+++.+++... .++.+++.+...
T Consensus 158 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~-~~~~al~~~g~~~p~di~iig~d~~~ 217 (268)
T cd06289 158 GPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAF-GAMSGLRRAGLTPGRDIAVVGFDDVA 217 (268)
T ss_pred cCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEEeecCch
Confidence 22111111122222 2 358999999988888 77788876532 256788887654
No 36
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.83 E-value=0.24 Score=43.64 Aligned_cols=184 Identities=8% Similarity=0.023 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+++.....-. .......+...+ .-..+|+||+++...-....+.+.+ .++++++++......
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~~- 96 (270)
T cd06294 24 RGISAVANENGYDISLATGKN--EEELLEEVKKMI-QQKRVDGFILLYSREDDPIIDYLKE---EKFPFVVIGKPEDDK- 96 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCC--cHHHHHHHHHHH-HHcCcCEEEEecCcCCcHHHHHHHh---cCCCEEEECCCCCCC-
Confidence 345567788899987432111 000012233333 2245899999875433333444443 467899998643110
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
. ++..........+..+++.|.+. ..++|+++.|.... .-+.+.+++.|.......+ .....
T Consensus 97 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~-~~~~~ 165 (270)
T cd06294 97 --E------NITYVDNDNIQAGYDATEYLIKL--GHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVI-ISLDF 165 (270)
T ss_pred --C------CCCeEEECcHHHHHHHHHHHHHc--CCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceE-EecCC
Confidence 1 22211111223345566666654 24689999876542 2445677777753221111 11111
Q ss_pred C-CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 H-HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~-~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
. ....+.... + .++++|+..+...+. .++..+.+... .++.+++.+..-
T Consensus 166 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~iP~dv~vig~d~~~ 222 (270)
T cd06294 166 SEEGGYKALKKLLEQHPRPTAIVATDDLLAL-GVLKVLNELGLKVPEDLSIIGFNNSI 222 (270)
T ss_pred chHHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCcceEEEeeCChh
Confidence 1 111122222 2 358999998887777 67777765432 356777777653
No 37
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=95.72 E-value=0.48 Score=41.73 Aligned_cols=180 Identities=9% Similarity=0.042 Sum_probs=97.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|+++....... +.+...+.++. ..++|+||+.+.+.-......+.+ .++++++++....
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (264)
T cd06274 20 RLEALARERGYQLLIACSDD-----DPETERETVETLIARQVDALIVAGSLPPDDPYYLCQK---AGLPVVALDRPGD-- 89 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEecCccC--
Confidence 34456778899887754321 22222222222 257899999876421111333333 4678999987642
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +..+.+ .+..+++.|.+. ..++|+++.|.... .-+.+.+++.|..+....++...
T Consensus 90 --~~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (264)
T cd06274 90 --PS------RFPS-VVSDNRDGAAELTRELLAA--PPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEG 158 (264)
T ss_pred --CC------CCCE-EEEccHHHHHHHHHHHHHC--CCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCC
Confidence 11 2222 122222 234455666653 34689999776542 24556777777654443343332
Q ss_pred cCCCCcHHHHHH-c----CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A----LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~----~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+.... + ..+++|+..+...+. .+++.+.+... .++.+++++...
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 159 YSPESGYQLMAELLARLGRLPRALFTTSYTLLE-GVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred CChHHHHHHHHHHHccCCCCCcEEEEcChHHHH-HHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 211111112222 2 247899999888888 77777776542 357788888754
No 38
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=95.71 E-value=0.75 Score=42.01 Aligned_cols=181 Identities=10% Similarity=0.058 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|++++..+. . .+.+...+.++. -.++|+||+++...-....+.+.. ..+++++.+|...
T Consensus 77 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~--~~~iPvV~i~~~~--- 146 (327)
T PRK10423 77 GVERSCFERGYSLVLCNT---E--GDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR--YPSVPTVMMDWAP--- 146 (327)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh--cCCCCEEEECCcc---
Confidence 455677788998765432 1 122222222222 256899999875432222222332 1368899998531
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
... .... +....+ .+..+++.|.+.. .++|+++.|... ..-+.+.|++.|..+....++...
T Consensus 147 -~~~------~~~~-v~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~ 216 (327)
T PRK10423 147 -FDG------DSDL-IQDNSLLGGDLATQYLIDKG--YTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGD 216 (327)
T ss_pred -CCC------CCCE-EEEChHHHHHHHHHHHHHcC--CCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 111 2221 222222 3455566666543 368999876532 234567788888765332222211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+..+. + ..+++|+.++-..+. .+++.+.+... .++.+++++...
T Consensus 217 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~~l~~~g~~vP~dvsvigfd~~~ 274 (327)
T PRK10423 217 FEFNGGFDAMQQLLALPLRPQAVFTGNDAMAV-GVYQALYQAGLSVPQDIAVIGYDDIE 274 (327)
T ss_pred CChHHHHHHHHHHhcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEeCChh
Confidence 111111122222 2 257899999988888 78787776532 357888887753
No 39
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=95.70 E-value=0.59 Score=42.78 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+...-....+.+.+ .+++++.+|...
T Consensus 81 i~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~---- 148 (329)
T TIGR01481 81 IEDIATMYKYNIILSNS-----DEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSR---SPVPVVLAGTVD---- 148 (329)
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEecCC----
Confidence 44556778988865421 1122222222221 257899999765322333344443 367888887532
Q ss_pred HHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch--------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~--------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
... ++.. +..+.+ .+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++...
T Consensus 149 ~~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~ 219 (329)
T TIGR01481 149 KEN------ELPS-VNIDYKQATKEAVGELIAKG--HKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGK 219 (329)
T ss_pred CCC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecC
Confidence 111 3322 222322 2344556565532 3688888764321 23557788888776543333222
Q ss_pred cCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+..+.+ ..+++|+..+-..+. .+++.+.+.+. .++.+++++..-
T Consensus 220 ~~~~~~~~~~~~ll~~~p~ai~~~~d~~A~-g~~~al~~~g~~vP~dvsvvgfd~~~ 275 (329)
T TIGR01481 220 YSYDAGYKAFAELKGSLPTAVFVASDEMAA-GILNAAMDAGIKVPEDLEVITSNNTR 275 (329)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEeeCCch
Confidence 1111112222222 357999999988877 77777776532 357788887654
No 40
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.63 E-value=0.4 Score=42.20 Aligned_cols=178 Identities=11% Similarity=-0.022 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++..+.-. +.+...+.++. -..+|+||+++...-.. ..... ..+++++.+|..+..
T Consensus 21 ~i~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dgiii~~~~~~~~-~~~~~---~~~ipvv~~~~~~~~- 90 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTGG-----DDELEAEAVEALLDHRVDGIIYATMYHREV-TLPPE---LLSVPTVLLNCYDAD- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEecCCCChh-HHHHH---hcCCCEEEEecccCC-
Confidence 34566778898876554221 11111122222 25689999987532111 11122 246889988865421
Q ss_pred HHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. .+.. +.++ ...+..+++.|.+. ..++++++.+.... .-+.+.+++.|.++....++...
T Consensus 91 ---~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (269)
T cd06288 91 ---G------ALPS-VVPDEEQGGYDATRHLLAA--GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGD 158 (269)
T ss_pred ---C------CCCe-EEEccHHHHHHHHHHHHHc--CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 1 2222 2222 23455566666654 34689998776542 23456777777654433333222
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + ..+|+|+.+|...+. .+++.+.+... .++.+++.+..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~vp~di~v~g~d~~ 215 (269)
T cd06288 159 WSADDGYEAAAALLDLDDRPTAIFCGNDRMAM-GAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEeCcHHHH-HHHHHHHHcCCCCcccceEEeeCCc
Confidence 211111111222 2 358999999998888 77777776532 35677777654
No 41
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=95.62 E-value=0.67 Score=40.87 Aligned_cols=180 Identities=7% Similarity=0.020 Sum_probs=95.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|+++...... .+.+.-.+.++. -..+|+||+++..--...++.+.+ .++++++++....
T Consensus 20 g~~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (268)
T cd06270 20 GVESVARKAGKHLIITAGH-----HSAEKEREAIEFLLERRCDALILHSKALSDDELIELAA---QVPPLVLINRHIP-- 89 (268)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CchHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhh---CCCCEEEEeccCC--
Confidence 3456678889998754321 121211122222 257999999764211112344433 4678988886431
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. +...........++.+++.|.+. ..++|+++.+.... .-+.+.+++.|..+....++....
T Consensus 90 --~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T cd06270 90 --GL------ADRCIWLDNEQGGYLATEHLIEL--GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDF 159 (268)
T ss_pred --CC------CCCeEEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCC
Confidence 11 22111122223455566666554 34688888765432 235667778876653322322221
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
......+..+. + ..+++|+.++...+. .+++.+++... .++.+++++..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~ip~di~v~g~d~~ 215 (268)
T cd06270 160 TEEGGYAAMQELLARGAPFTAVFCANDEMAA-GAISALREHGISVPQDVSIIGFDDV 215 (268)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceeEEEecCc
Confidence 11111222222 2 247899988888888 78787776532 35678888874
No 42
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.60 E-value=0.43 Score=42.38 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|++++..+.-... ...+.+...+ .-...|+||+++...-....+.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~--~~~~~~~~~l-~~~~vdgvi~~~~~~~~~~~~~l~~---~~iPvv~~~~~~---- 88 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLA--RLKRYLESTT-LAYLTDGLLLASYDLTERLAERRLP---TERPVVLVDAEN---- 88 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcH--HHHHHHHHHH-HhcCCCEEEEecCccChHHHHHHhh---cCCCEEEEccCC----
Confidence 45667788889999876543110 0011222222 2256999999985432333343433 467899998632
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------------hhhHHHHHHhCCCeeEEEee
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------------SNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------------~~~L~~~L~~~G~~v~~~~v 209 (302)
. ++..........+...++.|.+. . ++++++.+... ..-+.+.+++.|..+....+
T Consensus 89 --~------~~~~v~~d~~~~g~~a~~~L~~~-~--~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~ 157 (269)
T cd06297 89 --P------RFDSFYLDNRLGGRLAGAYLADF-P--GRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDLL 157 (269)
T ss_pred --C------CCCEEEECcHHHHHHHHHHHHHh-C--CceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhhE
Confidence 1 22222222223344455666554 2 57777755332 22345677788876544223
Q ss_pred eeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
+..........+.... + ..+++|+..+-..+- .+++.+.+... .++.+++++..-
T Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~vP~di~vvg~d~~~ 219 (269)
T cd06297 158 AITDHSEEGGRLAMRHLLEKASPPLAVFASADQQAL-GALQEAVELGLTVGEDVRVVGFDDHP 219 (269)
T ss_pred EeCCCChhhHHHHHHHHHcCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEECCch
Confidence 3322111111122222 2 247899999988887 77777776532 357788887663
No 43
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=95.58 E-value=0.29 Score=43.03 Aligned_cols=182 Identities=11% Similarity=0.025 Sum_probs=97.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.+++.|+++...+.-.- + ....++.+.+ .-.+.|+||+.+...-...++.+.+ ..+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~-~-~~~~~~i~~l-~~~~vdgiii~~~~~~~~~~~~~~~----~~pvv~~~~~~~--- 88 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQTNYD-K-EKELEYLELL-KTKQVDGLILCSRENDWEVIEPYTK----YGPIVLCEEYDS--- 88 (260)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC-h-HHHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHhc----CCCEEEEecccC---
Confidence 3456667788998876543110 0 0111122222 2256899999765321222333332 237888886542
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
. ++..........+..+++.|.+.. .++|+++.|... ..-+.+.|++.|..+....+|.....
T Consensus 89 --~------~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~~ 158 (260)
T cd06286 89 --K------NISSVYIDHYEAFYEALKYLIQKG--YRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCFT 158 (260)
T ss_pred --C------CCCEEEECChHHHHHHHHHHHHCC--CceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCCC
Confidence 2 433222222234455556666543 468999987654 23456677788866543333322111
Q ss_pred CCCcHHHHHHc----CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 HHVDQTVLKQA----LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~~~~~~~~~~~----~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.....+..+.+ ..+++|++.+...+. .+++.+.+... .++.+++++...
T Consensus 159 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~ip~di~v~g~d~~~ 214 (260)
T cd06286 159 IEDGERIGHQLLKMKDRPDAIFTGSDEVAA-GIITEAKKQGIRVPEDLAIIGFDNQP 214 (260)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEcchHHHH-HHHHHHHHcCCCCCcceEEEeecCcc
Confidence 11112222222 358999999999888 78788776532 357788886543
No 44
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=95.55 E-value=0.44 Score=42.10 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=94.8
Q ss_pred HHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.+++ .|++++..... .+.+...+.++. -.+.|+||+.+.. ........+.+ .+++++.++...
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~---~~iPvv~~~~~~ 91 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-----NDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA---AGIPLVYVNRRP 91 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHH---CCCeEEEecCCC
Confidence 35556677 78888865431 122222222222 1468999987654 23334444443 467899988653
Q ss_pred HHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
... .. ++..........+..+++.|.+.....++|+++.|.... .-+.+.|.+.| .+....++.
T Consensus 92 ~~~--~~------~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~ 162 (272)
T cd06301 92 ENA--PK------GVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYP-DIKVVEEQT 162 (272)
T ss_pred CCC--CC------eeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCC-CcEEEecCC
Confidence 211 01 222111212233455556665542223589999775432 34567777777 333333322
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC--CCceEEEECHH
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ--WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~--~~~~i~~IG~~ 264 (302)
.........+..+. + ..+++|+..+...+. ..++.+.+... .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~~~di~ivg~d~~ 220 (272)
T cd06301 163 ANWSRAEAMDLMENWLSSGGKIDAVVANNDEMAL-GAIMALKAAGKSDKDVPVAGIDGT 220 (272)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCEEEECCCchHH-HHHHHHHHcCCCCCCcEEEeeCCC
Confidence 11111111111222 2 357898888888887 77777776532 25677777543
No 45
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.51 E-value=0.51 Score=41.76 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=94.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av-~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.+++.|++++..... .+.+...+.++. -.+.|+||+++...- ..+.+.+.+ .+++++.++....
T Consensus 20 ~i~~~a~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~---~~ipvV~i~~~~~- 90 (269)
T cd06281 20 GAEDRLRAAGYSLLIANSL-----NDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALAS---LDLPIVLLDRDMG- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHh---CCCCEEEEecccC-
Confidence 3456778889998765321 122212222222 257899999875321 333444444 3678999986542
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. .+..........+..+++.|.+.. .++++++.+.... .-+.+.++++|..+.....|...
T Consensus 91 ----~------~~~~V~~d~~~~g~~a~~~l~~~G--~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 158 (269)
T cd06281 91 ----G------GADAVLFDHAAGMRQAVEYLISLG--HRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLST 158 (269)
T ss_pred ----C------CCCEEEECcHHHHHHHHHHHHHCC--CcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCc
Confidence 1 222111111223344555665542 3679988875331 34567788888765322222221
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
. .....+..+. + ..+++|+.+|-..+. .+++.+.+... .++.+++.+..
T Consensus 159 ~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~ip~dv~iig~d~~ 214 (269)
T cd06281 159 P-AASGFDATRALLALPDRPTAIIAGGTQVLV-GVLRALREAGLRIPRDLSVISIGDS 214 (269)
T ss_pred H-HHHHHHHHHHHHcCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCcceeEEEecCc
Confidence 1 1111122222 2 347999888888887 77777766432 35678888743
No 46
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=95.43 E-value=1.3 Score=39.08 Aligned_cols=188 Identities=9% Similarity=-0.008 Sum_probs=94.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEECh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IifTS~--~av~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
..+.+.++++|+++...+. . .+.+ .+...+ -.++|+||+.+. ......++.+.+ .++++++++.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~l~~~~--~~~vdgii~~~~~~~~~~~~i~~~~~---~~ipvV~~~~ 88 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDA---G--GDDAKQADQIDQAI--AQKVDAIIIQHGRAEVLKPWVKRALD---AGIPVVAFDV 88 (273)
T ss_pred HHHHHHHHHcCCEEEEECC---C--CCHHHHHHHHHHHH--HcCCCEEEEecCChhhhHHHHHHHHH---cCCCEEEecC
Confidence 3456778899999876432 1 1222 222333 147999999764 334444555544 3678888876
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch------hhHHHHHHhCC-CeeEEEee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRG-FEVVRLNT 209 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~G-~~v~~~~v 209 (302)
.... . ++..........+...++.|.+.....++|+++.+.... .-+.+.+++.| ..+.....
T Consensus 89 ~~~~----~------~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~ 158 (273)
T cd06305 89 DSDN----P------KVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELG 158 (273)
T ss_pred CCCC----C------ccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccc
Confidence 4321 1 222111222223444555555532233678888764211 14456667666 43322111
Q ss_pred eeeecCCCCcHHHHHH-c---CCC--CEEEEECcHHHHHHHHHhhhcccC-CCceEEEEC--HHHHHHHHH
Q 022128 210 YTTEPVHHVDQTVLKQ-A---LSI--PVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIG--ETTASAAKR 271 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~--d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG--~~Ta~~l~~ 271 (302)
...........+..+. + .++ ++|+..+...+. .++..+.+... .++.+++++ +.+.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~~di~iig~d~~~~~~~~i~~ 228 (273)
T cd06305 159 DVSNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAK-GAKQALDEAGRTDEIKIYGVDISPEDLQLMRE 228 (273)
T ss_pred cccccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhH-HHHHHHHHcCCCCCceEEEecCCHHHHHHHHc
Confidence 0100001111111222 2 346 778888777777 77777766543 257777776 334455554
No 47
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=95.41 E-value=0.67 Score=42.65 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=95.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
+.+.++++|+.++..+. ..+.+...+.++. ..++|+||+.+... ....++.+.+ .+++++.++....
T Consensus 86 i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 155 (342)
T PRK10014 86 LTEALEAQGRMVFLLQG-----GKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEE---KGIPVVFASRASY-- 155 (342)
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhh---cCCCEEEEecCCC--
Confidence 44567788987764322 1122222222322 25699999986542 2333444443 3678888875431
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++...
T Consensus 156 --~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 224 (342)
T PRK10014 156 --LD------DVDT-VRPDNMQAAQLLTEHLIRNG--HQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECT 224 (342)
T ss_pred --CC------CCCE-EEeCCHHHHHHHHHHHHHCC--CCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCC
Confidence 11 3322 22222 23444556665543 3689999875432 23567788888765433232211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---C---------CceEEEECHHHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---W---------SNSVACIGETTAS 267 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~---------~~~i~~IG~~Ta~ 267 (302)
.......+.... + ..+++|+..+-..+- .++..+.+... . ++.+++++.....
T Consensus 225 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~~l~~~g~~vp~~~~~~~~p~di~vigfd~~~~~ 293 (342)
T PRK10014 225 SSQKQAAEAITALLRHNPTISAVVCYNETIAM-GAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEA 293 (342)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCccccccccCceEEEEecCchHH
Confidence 111111112222 2 357899999888877 66666655321 2 5677777765433
No 48
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.40 E-value=1.3 Score=38.86 Aligned_cols=180 Identities=9% Similarity=-0.025 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++.+..- .+.....+.++.+ .+.|+||+++...-....+.+ ..+++++.++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~----~~~ipvv~~~~~~~- 88 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDTR-----SDPEREQEYLDLLRRKQADGIILLDGSLPPTALTAL----AKLPPIVQACEYIP- 88 (267)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----hcCCCEEEEecccC-
Confidence 45666788889988754321 1222122222222 578999998754222222222 13678888864321
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++..........+..+++.|.+. ..++|+++.+... ..-+.+.++++|+++....++...
T Consensus 89 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 157 (267)
T cd06284 89 ---GL------AVPSVSIDNVAAARLAVDHLISL--GHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGD 157 (267)
T ss_pred ---CC------CcceEEecccHHHHHHHHHHHHc--CCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 11 22111111223345566666654 2468988877533 134566788888665433333322
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + ..+++|+.+|...+. .+...+.+... .++.+++++-.
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~-g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 158 FSLESGYAAARRLLALPDRPTAIFCFSDEMAI-GAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred CChHHHHHHHHHHHhCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCccceeEEEeCCH
Confidence 111111122222 2 357899999988887 77777766432 35677777654
No 49
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.39 E-value=0.77 Score=40.40 Aligned_cols=179 Identities=12% Similarity=0.081 Sum_probs=95.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|+.++..+. ..+.+...+.++. -..+|+||+.+...-...++.+.+ .+++++.+|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~iPvv~~~~~~~- 89 (265)
T cd06285 19 EGIEEAAAERGYSTFVANT-----GDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR---RGVPFVLVLRHAG- 89 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHH---cCCCEEEEccCCC-
Confidence 3456677888988653322 1122222222222 257899998764432223344443 3678999987541
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. . .........+..+++.|.+.. .++++++.|.... .-+.+.+++.|..+....++...
T Consensus 90 ---~~------~--~V~~d~~~ag~~a~~~L~~~g--~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 156 (265)
T cd06285 90 ---TS------P--AVTGDDVLGGRLATRHLLDLG--HRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSG 156 (265)
T ss_pred ---CC------C--EEEeCcHHHHHHHHHHHHHCC--CccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 11 1 111112233455556665543 4688888775542 34456677777665332222211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + ..+++|+.++...+. .+++.+.+... .++.+++.+..
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~~p~di~iig~d~~ 213 (265)
T cd06285 157 FDIEGGEAAAEKLLRSDSPPTAIFAVNDFAAI-GVMGAARDRGLRVPDDVALVGYNDI 213 (265)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEEeecCc
Confidence 111111122222 2 247999999999888 78888876532 34567777654
No 50
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=95.37 E-value=0.72 Score=40.61 Aligned_cols=181 Identities=10% Similarity=0.025 Sum_probs=94.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|++++..+. ..+.+...+.++.+ .+.|+||+++...-......+.. ..+++++.+|....
T Consensus 20 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~ipvV~i~~~~~-- 90 (269)
T cd06275 20 GVEQYCYRQGYNLILCNT-----EGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER--YRHIPMVVMDWGPE-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEeC-----CCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEecccC--
Confidence 344566778988864321 11222222222222 56899999875422222232322 24788999987532
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. ++..........++.+++.|.+.. .++|+++.+.... .-+.+.+++.|..+.....+....
T Consensus 91 --~~------~~~~V~~d~~~~~~~~~~~l~~~G--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T cd06275 91 --DD------FADKIQDNSEEGGYLATRHLIELG--HRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDF 160 (269)
T ss_pred --CC------CCCeEeeCcHHHHHHHHHHHHHCC--CceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCC
Confidence 11 221111111223455556665542 3689988765432 235667777776643222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
......+..+. + ..+++|+.+|...+. .+++.+++... .++.+++++..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~vp~di~vvg~d~~ 216 (269)
T cd06275 161 ECEGGYEAMQRLLAQPKRPTAVFCGNDLMAM-GALCAAQEAGLRVPQDLSIIGYDDI 216 (269)
T ss_pred ChHHHHHHHHHHHcCCCCCcEEEECChHHHH-HHHHHHHHcCCCCCcceEEEEeCCh
Confidence 11111122222 2 257899999988887 77777776532 35678888654
No 51
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.37 E-value=0.59 Score=41.13 Aligned_cols=179 Identities=9% Similarity=-0.005 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|++++..+.. .+.+...+.++.+ .+.|+||+.+...-......+. .+++++.+|....
T Consensus 20 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~----~~iPvV~i~~~~~-- 88 (265)
T cd06290 20 GMERGLNGSGYSPIIATGH-----WNQSRELEALELLKSRRVDALILLGGDLPEEEILALA----EEIPVLAVGRRVP-- 88 (265)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHh----cCCCEEEECCCcC--
Confidence 3456678889998775431 2222222233222 5689999886432222222221 3688999986431
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. ++..........+..+++.|.+.. .++|+++.+.... .-+.+.+.+.|..+....++....
T Consensus 89 --~~------~~~~V~~d~~~a~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06290 89 --GP------GAASIAVDNFQGGYLATQHLIDLG--HRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDF 158 (265)
T ss_pred --CC------CCCEEEECcHHHHHHHHHHHHHCC--CCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCC
Confidence 12 322111112223444555665543 3689888776432 234556666776543322222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
......+.++. + ..+++|+.++...+. .+++.+.+... .++.+++++..
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~aii~~~~~~a~-~~~~~l~~~g~~ip~di~vi~~d~~ 214 (265)
T cd06290 159 EEESGLEAVEELLQRGPDFTAIFAANDQTAY-GARLALYRRGLRVPEDVSLIGFDDL 214 (265)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEeeecCc
Confidence 11111122222 2 247999999988888 77777776532 35678887754
No 52
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.37 E-value=0.77 Score=42.03 Aligned_cols=214 Identities=14% Similarity=0.112 Sum_probs=119.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeee-CCC--chHHHHHHhcCCCccEEEEeCh----HHH-HH-----
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPD--TDRLSSVLNADTIFDWIIITSP----EAG-SV----- 116 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-~~~--~~~l~~~l~~l~~~d~IifTS~----~av-~~----- 116 (302)
|++|.|.-...+.-.+.+.|.+.|+.+..+-+=+... ... ...+.+. .+.+.|+||+.=| .+. +.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLEL--DLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhh--hhccCCEEEECCccccCCceEecccccC
Confidence 6788888888888889999999999976553211100 000 1111111 2466788876543 210 00
Q ss_pred ---H-HHHHHHcCCCCceEEEEChhhH---HHHHHHhhccCCCCcee------ccC---CCccHHHHHHhcccC---CCC
Q 022128 117 ---F-LEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVA------FSP---SKATGKILASELPKN---GKK 177 (302)
Q Consensus 117 ---f-~~~l~~~~~~~~~i~aVG~~Ta---~~l~~~~~~~~~G~~~~------~~p---~~~~~e~L~~~L~~~---~~~ 177 (302)
+ .+.+... +...++..|-.+. +++++. |+.+. -++ ...++|+-+..+.+. ...
T Consensus 79 ~~~l~~~~l~~~--~~~~~~~~G~~~~~l~~~a~~~------gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~ 150 (287)
T TIGR02853 79 KVVLTPELLEST--KGHCTIYVGISNPYLEQLAADA------GVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIH 150 (287)
T ss_pred CccccHHHHHhc--CCCCEEEEecCCHHHHHHHHHC------CCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCC
Confidence 0 1112221 2344455555443 255666 88775 222 224556544433322 226
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC-----------CcHHHHHHcCCCCEEEEECcHHHH-HHHH
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAVR-SSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~ivftS~s~v~-~~~~ 245 (302)
+++++++........+...|+..|++| .+|.+.+... ...++.+.+.+.|+|+.+.|..+- ...+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V---~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l 227 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARV---FVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTADVL 227 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCHHHH
Confidence 789999988888888999999999765 4555543210 011222234688999999987652 0233
Q ss_pred HhhhcccCCCceEEE----ECHHHHHHHHHcCCCeEEec
Q 022128 246 NLISDTEQWSNSVAC----IGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~----IG~~Ta~~l~~~G~~~~~v~ 280 (302)
+.+++ +..++= -|.+--+.+++.|.+.+..+
T Consensus 228 ~~~k~----~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 228 SKLPK----HAVIIDLASKPGGTDFEYAKKRGIKALLAP 262 (287)
T ss_pred hcCCC----CeEEEEeCcCCCCCCHHHHHHCCCEEEEeC
Confidence 33332 112221 25554589999999876543
No 53
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=95.34 E-value=0.49 Score=44.14 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=107.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+...++++|++++..+.-.-. .......+.+ .-..+|+||+.+...-+.+.+.+.+. +++++.+|....
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~~--~~e~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~~---~~P~V~i~~~~~--- 148 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDDP--EKEREYLETL-LQKRVDGLILLGERPNDSLLELLAAA---GIPVVVIDRSPP--- 148 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCCH--HHHHHHHHHH-HHcCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEeCCCc---
Confidence 44566778899999877766511 1112222333 23679999999855545555555553 689999998664
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCee-EEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEV-VRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v-~~~~vY~~~~ 214 (302)
.. ++.........-+..+++.|.+.. .++|.++.|... ..-+.+.|.+.|..+ ..+.. ....
T Consensus 149 -~~------~~~~V~~Dn~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~-~~~~ 218 (333)
T COG1609 149 -GL------GVPSVGIDNFAGAYLATEHLIELG--HRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIV-EGDF 218 (333)
T ss_pred -cC------CCCEEEEChHHHHHHHHHHHHHCC--CceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEE-ecCC
Confidence 22 443333333334555666776643 367999988731 245778899999876 22222 2111
Q ss_pred CCCCcHHHHHH-c---CC-CCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECH
Q 022128 215 VHHVDQTVLKQ-A---LS-IPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGE 263 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~-~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~ 263 (302)
......+.... + .. +++|+++|-..+- .+++.+.+... .++.++..+.
T Consensus 219 ~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Al-g~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 219 SEESGYEAAERLLARGEPRPTAIFCANDLMAL-GALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred ChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCCeeEEEEecC
Confidence 12221222222 2 23 8999999998888 77766665432 2466777777
No 54
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.30 E-value=0.33 Score=42.83 Aligned_cols=180 Identities=11% Similarity=0.027 Sum_probs=95.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|++++....-. +.+...+.++. -.++|+||+++...-...++.+. ..+++++++|.....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-----~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~---~~~ipvV~i~~~~~~- 90 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGR-----RTSPERQWVERLSARRTDGVILVTPELTSAQRAALR---RTGIPFVVVDPAGDP- 90 (270)
T ss_pred HHHHHHHHcCCeEEEecCCC-----chHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHh---cCCCCEEEEecccCC-
Confidence 44566778898876653321 11111122222 25799999987643222233332 257899999865321
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. .+.. +.++. ..++.+++.|.+. ..++++++.|.... .-+.+.+++.|..+....++...
T Consensus 91 --~~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (270)
T cd06296 91 --DA------DVPS-VGATNWAGGLAATEHLLEL--GHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGD 159 (270)
T ss_pred --CC------CCCE-EEeCcHHHHHHHHHHHHHc--CCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCC
Confidence 01 2211 22222 2344455555543 24689988775432 34556677777665432233222
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + ..+++|+..|...+. .+.+.+.+... .++.+++++..
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~~p~~i~v~~~d~~ 216 (270)
T cd06296 160 FSTESGFRAAAELLALPERPTAIFAGNDLMAL-GVYEAARERGLRIPEDLSVVGFDDL 216 (270)
T ss_pred CCHHHHHHHHHHHHhCCCCCcEEEEcCcHHHH-HHHHHHHHhCCCCCCceEEEEECCh
Confidence 111111112222 2 357899999988888 78888876542 34667777654
No 55
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=95.27 E-value=1.4 Score=40.34 Aligned_cols=178 Identities=11% Similarity=0.105 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|+++...... .+.+...+.++. -.++|+||+.+... ...++..+.+ .+++++++|....
T Consensus 82 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~v~~~~~- 152 (328)
T PRK11303 82 YLERQARQRGYQLLIACSD-----DQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQN---DGLPIIALDRALD- 152 (328)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHh---cCCCEEEECCCCC-
Confidence 3445667789988764321 122211122222 25799999976421 1223344433 3678999987531
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++..........+..+++.|.+.. .++|+++.|... ..-+.+.|++.|..+.. +|...
T Consensus 153 ---~~------~~~~V~~d~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~~~~~ 219 (328)
T PRK11303 153 ---RE------HFTSVVSDDQDDAEMLAESLLKFP--AESILLLGALPELSVSFEREQGFRQALKDDPREVHY--LYANS 219 (328)
T ss_pred ---CC------CCCEEEeCCHHHHHHHHHHHHHCC--CCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceE--EEeCC
Confidence 12 333222222233444556665543 468999977532 13466788888875432 22211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~ 264 (302)
.......+..+. + ..+++|+.+|-..+. ..++.+.+.. ..++.+++++..
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~disv~gfd~~ 276 (328)
T PRK11303 220 FEREAGAQLFEKWLETHPMPDALFTTSYTLLQ-GVLDVLLERPGELPSDLAIATFGDN 276 (328)
T ss_pred CChHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEeCCh
Confidence 111111122222 2 257999999987777 6667666543 235677788754
No 56
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=95.25 E-value=1.2 Score=38.49 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=90.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|+++...+. ..+.+...+.++. -.++|+|++.....-...+..+.+ .++++++++.....
T Consensus 20 g~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~~- 90 (264)
T cd06267 20 GIEEAAREAGYSVLLCNS-----DEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAA---LGIPVVLVDRPLDG- 90 (264)
T ss_pred HHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHH---cCCCEEEecccccC-
Confidence 345556677887765432 1121111122211 247899998776532221333333 46788888765422
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. .+.. +.... ..+..+++.|.+. ..++++++.+... ..-+.+.+++.|..+....++...
T Consensus 91 ---~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~ 158 (264)
T cd06267 91 ---L------GVDS-VGIDNRAGAYLAVEHLIEL--GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGD 158 (264)
T ss_pred ---C------CCCE-EeeccHHHHHHHHHHHHHC--CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecc
Confidence 1 2221 12222 2344455566543 3468998876644 234567777777544333332222
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
............ + .++|+|+..+...+. .+...+.+... .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~-~~~~al~~~g~~~~~~i~i~~~d~~ 215 (264)
T cd06267 159 FSEESGYEAARELLASGERPTAIFAANDLMAI-GALRALRELGLRVPEDVSVVGFDDI 215 (264)
T ss_pred cchhhHHHHHHHHHhcCCCCcEEEEcCcHHHH-HHHHHHHHhCCCCCCceEEEeeCCC
Confidence 111111111222 2 348888888877766 66666665432 24566666533
No 57
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=95.22 E-value=0.82 Score=38.55 Aligned_cols=132 Identities=19% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEE
Q 022128 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 127 ~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 206 (302)
.+..++.-...|++.|++++ ++++.-+ ..+..++.+.|.+....+.+|.++.....-..+.
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~------------ 93 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-----SIPVVEI--PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLE------------ 93 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC------SS-EEEE-----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHH------------
T ss_pred cCCeEEEECCHHHHHHHHhC-----CCCEEEE--CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHH------------
Confidence 45667766667999999986 6766444 4667788888876554556666655433222111
Q ss_pred EeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCCh
Q 022128 207 LNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 285 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~ 285 (302)
.+.+.+ -++....|+|+..++ ..++.+... +..+++=|..+.+.++++|++.+.+ .++.
T Consensus 94 --------------~~~~ll~~~i~~~~~~~~~e~~-~~i~~~~~~---G~~viVGg~~~~~~A~~~gl~~v~i--~sg~ 153 (176)
T PF06506_consen 94 --------------SIEELLGVDIKIYPYDSEEEIE-AAIKQAKAE---GVDVIVGGGVVCRLARKLGLPGVLI--ESGE 153 (176)
T ss_dssp --------------HHHHHHT-EEEEEEESSHHHHH-HHHHHHHHT---T--EEEESHHHHHHHHHTTSEEEES--S--H
T ss_pred --------------HHHHHhCCceEEEEECCHHHHH-HHHHHHHHc---CCcEEECCHHHHHHHHHcCCcEEEE--EecH
Confidence 111112 244556677777777 666655543 5788888999999999999997544 5578
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
+++-.+|.++++
T Consensus 154 esi~~Al~eA~~ 165 (176)
T PF06506_consen 154 ESIRRALEEALR 165 (176)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988864
No 58
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.18 E-value=0.5 Score=42.28 Aligned_cols=180 Identities=11% Similarity=0.077 Sum_probs=98.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.+++.|++++.++... +.+.+. .+ ...+.|+||+++.......++.+.+ .+++++++|....
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~-~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~--- 90 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS-----EDSDSA-LV-VSALVDGFIVYGVPRDDPLVAALLR---RGLPVVVVDQPLP--- 90 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc-----HHHHHH-HH-HhcCCCEEEEeCCCCChHHHHHHHH---cCCCEEEEecCCC---
Confidence 345677888999998876532 112222 22 2367899999875332233444443 4678988886431
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------------------------hhhHHHHHH
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------------------------SNEIEEGLS 198 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------------------------~~~L~~~L~ 198 (302)
. ++..........+..+++.|.+.. .++|+++.+... ..-+.+.++
T Consensus 91 --~------~~~~v~~d~~~~g~~~~~~L~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~ 160 (283)
T cd06279 91 --P------GVPSVGIDDRAAAREAARHLLDLG--HRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALE 160 (283)
T ss_pred --C------CCCEEeeCcHHHHHHHHHHHHHcC--CCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 1 222111212233455556665543 467888876421 133566788
Q ss_pred hCCCeeEEEeeeeeecCC-CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 199 NRGFEVVRLNTYTTEPVH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~-~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
+.|.+.....+|...... ....+..+. + ..+++|+..+-..+. ...+.+.+... .++.+++++....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-gv~~al~~~g~~ip~di~vig~d~~~~ 235 (283)
T cd06279 161 EAGIDISDVPIWEIPENDRASGEEAARELLDASPRPTAILCMSDVLAL-GALQVARELGLRVPEDLSVVGFDGIPE 235 (283)
T ss_pred HcCCCCChheEEecCCCchHHHHHHHHHHHcCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEeeeCCCcc
Confidence 888665444444321111 111122222 2 247888888877777 67777765432 3577888875433
No 59
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=95.13 E-value=0.57 Score=37.89 Aligned_cols=101 Identities=16% Similarity=0.214 Sum_probs=64.1
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHH-----HHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~-----v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+.+.+...|+..|++|..+-+. .+++++.+.. .++|+|..+|-.+ .+ .+.+.+++....+.++++=
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~------v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~-~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVL------SPQEEFIKAAIETKADAILVSSLYGHGEIDCK-GLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHcCCCEEEEecccccCHHHHH-HHHHHHHHCCCCCCEEEec
Confidence 4566788899999988666553 2334444432 4788888877433 33 3445555443434555444
Q ss_pred C-----H-H---HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 262 G-----E-T---TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 262 G-----~-~---Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
| + . ..+.++++|+..++- +....+.+++.|++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~-pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFA-PGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEEC-cCCCHHHHHHHHHHHhc
Confidence 4 1 1 134699999998764 44588999999998764
No 60
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.12 E-value=0.45 Score=42.09 Aligned_cols=185 Identities=11% Similarity=0.025 Sum_probs=95.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..+.+.+++.|++++..+...- .....++.+.+ .-.+.|+||+++.. +....+..+.+ .+++++++|..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l-~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~---~~ipvV~i~~~ 92 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRG--GVSEADYVEDL-LARGVRGVVFISSLHADTHADHSHYERLAE---RGLPVVLVNGR 92 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCC--hHHHHHHHHHH-HHcCCCEEEEeCCCCCcccchhHHHHHHHh---CCCCEEEEcCC
Confidence 4566677789998864432110 00111222222 12578999997632 22233444433 47889999875
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeee
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 210 (302)
... .. .+..........+..+++.|.+.. .++++++.|... ..-+.+.+++.|..+....++
T Consensus 93 ~~~---~~------~~~~V~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~ 161 (273)
T cd06292 93 APP---PL------KVPHVSTDDALAMRLAVRHLVALG--HRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVA 161 (273)
T ss_pred CCC---CC------CCCEEEECcHHHHHHHHHHHHHCC--CceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheE
Confidence 421 01 222212222233445556666543 468888876532 134556677777543322222
Q ss_pred eeecCCCCcHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 211 TTEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
..........+..+. + ..+++|+..+...+. .+++.+.+... .++.+++++..-
T Consensus 162 ~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~-g~~~~l~~~g~~ip~di~ii~~d~~~ 220 (273)
T cd06292 162 RGMFSVEGGQAAAVELLGSGPTAIVAASDLMAL-GAIRAARRRGLRVPEDVSVVGYDDSA 220 (273)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEEeeCCch
Confidence 221111111222222 2 248998888888877 77777766532 356788887554
No 61
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.08 E-value=0.52 Score=37.81 Aligned_cols=97 Identities=13% Similarity=0.199 Sum_probs=63.0
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH--H---HHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS--A---VRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s--~---v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+.+.+...|+..|++|..+-+. .+++++.+.. .++|+|..+|-. + .+ .+.+.+++....+.++++=
T Consensus 15 Gkniv~~~L~~~GfeVidLG~~------v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~-~~~~~l~~~gl~~v~vivG 87 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVL------SPQEEFIDAAIETDADAILVSSLYGHGEIDCK-GLREKCDEAGLKDILLYVG 87 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHcCCCEEEEeccccCCHHHHH-HHHHHHHHCCCCCCeEEEE
Confidence 4567788899999998666553 2333344332 578888887733 3 34 4555555544445677765
Q ss_pred CHH---------HHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 262 GET---------TASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 262 G~~---------Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
|.- ..+.|+++|+..++ ++..+.+.+++.|+
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf-~pgt~~~~i~~~l~ 127 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVF-APGTPPEEAIADLK 127 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEE-CcCCCHHHHHHHHh
Confidence 531 33569999999876 55568888888775
No 62
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.99 E-value=1.4 Score=39.29 Aligned_cols=193 Identities=10% Similarity=0.030 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|++++....- .+.+...+.++. -.+.|.||+.+.. .....++.+.+ .+++++.++...
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~-----~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGA-----LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIA---RGIPVIDMGTLI 90 (272)
T ss_pred HHHHHHHHHcCCEEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHH---CCCcEEEeCCCC
Confidence 34556677899988865321 122222222222 2568999997542 22333344433 467899998754
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCC-CeeEEEee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNT 209 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~v 209 (302)
... .. +....+.+.. ..++.+++.|.+.....++|+++.|... ..-+.+.|++.| ..+.. .
T Consensus 91 ~~~--~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~ 160 (272)
T cd06313 91 APL--QI------NVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVD--E 160 (272)
T ss_pred CCC--CC------ceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEe--c
Confidence 210 11 2111122332 2344455555554223468999977543 234566777765 33322 2
Q ss_pred eeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHH-HHHHcCC
Q 022128 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTAS-AAKRLGL 274 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~-~l~~~G~ 274 (302)
+..........+..+. + ..+++|+.+|-..+. ..++.+++....++.++.++..-.. .+-..|.
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~-g~~~al~~~g~~di~vvgfd~~~~~~~~~~~g~ 229 (272)
T cd06313 161 QPANWDVSKAARIWETWLTKYPQLDGAFCHNDSMAL-AAYQIMKAAGRTKIVIGGVDGDPPAIQAVSDGR 229 (272)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcHHH-HHHHHHHHcCCCceEEEeecCCHHHHHHHHcCc
Confidence 2111111111112222 2 357999999888887 7777776643345677777655443 2333453
No 63
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=94.98 E-value=0.92 Score=39.70 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|++++..+.- .+.+...+.++. -.++|+||+.+.+. ...+++.+.+ .+++++.++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~- 90 (266)
T cd06282 20 GIQEEARAAGYSLLLATTD-----YDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDA---ERVPYVLAYNDPQ- 90 (266)
T ss_pred HHHHHHHHCCCEEEEeeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhh---CCCCEEEEeccCC-
Confidence 3456778889998876441 122211122222 25789999976542 1224444444 3678888875432
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
. ++.. +.... ..+..+++.|.+. ..++|+++.|... ..-+.+.|++.|..+.....+.
T Consensus 91 ----~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~ 157 (266)
T cd06282 91 ----P------GRPS-VSVDNRAAARDVAQALAAL--GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIP 157 (266)
T ss_pred ----C------CCCE-EeeCcHHHHHHHHHHHHHc--CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCC
Confidence 2 2221 12222 2344455566554 3467888865421 1334567777886543321111
Q ss_pred eecCCCCcHHHHHHc---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 212 TEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.. .....+.+.+.+ ..+++|+.++...+. .+++.+.+... .++.+++.+..-
T Consensus 158 ~~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~p~di~v~g~d~~~ 215 (266)
T cd06282 158 FN-TAALPSALLALLTAHPAPTAIFCSNDLLAL-AVIRALRRLGLRVPDDLSVVGFDGIA 215 (266)
T ss_pred Cc-HHHHHHHHHHHhcCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeecchH
Confidence 11 010111122222 257999999988888 77777776532 245677776543
No 64
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=94.94 E-value=2.4 Score=37.34 Aligned_cols=161 Identities=17% Similarity=0.037 Sum_probs=84.5
Q ss_pred CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCC
Q 022128 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (302)
Q Consensus 101 ~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 177 (302)
.+.|+||+.+.. +....++.+.+ .+++++.++..... . .+.. +.++. ..+..+++.|.+...+
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~---~~iPvv~~~~~~~~----~------~~~~-v~~d~~~~g~~~~~~l~~~~~g 124 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACE---AGIPVVSFDGTVTT----P------CAYN-VNEDQAEFGKQGAEWLVKELGG 124 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEEecCCCC----C------ceeE-ecCCHHHHHHHHHHHHHHHcCC
Confidence 489999997643 33433444444 46789888754211 1 1111 22222 2344555556554334
Q ss_pred CCEEEEeCCCcc-------hhhHHHHHHhCC-CeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHH
Q 022128 178 KCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~ 245 (302)
.++++++.|... ..-+.+.+.+.| ..+.. ++..........+.... + .++++|+..+.. +- .++
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~-g~~ 200 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVG--EVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AV-GAV 200 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEe--ecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cH-HHH
Confidence 568998876432 134677777776 65532 21111110111112222 2 357899888888 77 677
Q ss_pred HhhhcccCCCceEEEECHHHHHH---HHHcCCCeEEe
Q 022128 246 NLISDTEQWSNSVACIGETTASA---AKRLGLKNVYY 279 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~IG~~Ta~~---l~~~G~~~~~v 279 (302)
+.+.+.......+++++...... +..-++..+.+
T Consensus 201 ~al~~~g~~~p~v~g~d~~~~~~~~~~~~~~ltti~~ 237 (272)
T cd06300 201 QAFEQAGRDIPPVTGEDENGFLRWRLWKDKGLKGIAI 237 (272)
T ss_pred HHHHHcCCCCcEEEeeCCcHHHHHHhhhccCceeEEE
Confidence 77776543223566776654443 44445655443
No 65
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=94.93 E-value=2 Score=37.59 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|++++.++. . .+.+...+.++. -.++|+||+.+... ...+++.+.+ .+++++.++..-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~---~--~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~---~~ipvv~~~~~~~ 91 (268)
T cd06323 20 GAQKEAKELGYELTVLDA---Q--NDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE---AGIPVFTIDREAN 91 (268)
T ss_pred HHHHHHHHcCceEEecCC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCcEEEEccCCC
Confidence 355677788988865433 1 122222222222 24699999976432 2334444444 3688988876421
Q ss_pred HHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEEeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTY 210 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY 210 (302)
. .. .+. .+....+ .+..+++.|.+.....++++++.|.... .-+.+.|+++ |..+.....+
T Consensus 92 ~---~~------~~~-~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~ 161 (268)
T cd06323 92 G---GE------VVS-QIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQPA 161 (268)
T ss_pred C---Cc------eEE-EEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEecccC
Confidence 0 00 111 1222222 2455666666542224688888664321 3445667763 6554321111
Q ss_pred eeecCCCCcHHHH-HHc---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHH
Q 022128 211 TTEPVHHVDQTVL-KQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTA 266 (302)
Q Consensus 211 ~~~~~~~~~~~~~-~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta 266 (302)
.. ......+.. +.+ .++++|+.++...+. ..++.+.+....++.+++++....
T Consensus 162 ~~--~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~~l~~~g~~di~iig~d~~~~ 218 (268)
T cd06323 162 DF--DRAKGLNVMENILQAHPDIKGVFAQNDEMAL-GAIEALKAAGKDDVKVVGFDGTPD 218 (268)
T ss_pred CC--CHHHHHHHHHHHHHHCCCcCEEEEcCCchHH-HHHHHHHHcCCCCcEEEEeCCCHH
Confidence 11 111111111 212 357899888888887 677777664333567777766543
No 66
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.88 E-value=0.73 Score=40.72 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|+++..+..-. ..+.+...+.++. ..++|+||+.+... ....++.+.. .+++++.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPAS---ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD---AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCcc---CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEecCCC
Confidence 345567788899887664211 1122222222222 24799999976542 1223333333 467888887542
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEEee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 209 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 209 (302)
.. .. .+.. +..+. ..+..+++.|.+.....++++++.|.... .-+.+.+++. |+.+.. .
T Consensus 93 ~~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~ 160 (273)
T cd06310 93 NS---DI------AVSF-VATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--T 160 (273)
T ss_pred CC---Cc------ceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--c
Confidence 11 11 2222 22222 23344555665542234689988765432 3456778877 766533 2
Q ss_pred eeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
+..........+.... + ..+++|++.|...+. .+++.+.+... .++.+++++...
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~-g~~~~l~~~g~~~di~vig~d~~~ 220 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAV-GAARAVRQAGKAGKVKVVGFDASP 220 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHH-HHHHHHHhcCCCCCeEEEEeCCCh
Confidence 2211111111112222 2 257899998888888 78787776533 356777776553
No 67
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=94.86 E-value=0.89 Score=41.86 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=96.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.++.. .+.+...+.+.. -.+.|+||+.....-...++.+.+ ..+++++.++....
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~iPvV~~d~~~~-- 150 (341)
T PRK10703 80 AVEKNCYQKGYTLILCNAW-----NNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 150 (341)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh--cCCCCEEEEecccC--
Confidence 4555677889887755321 122222222221 256899998764322333444443 13678999985321
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++...+.+..+ .+...++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++...
T Consensus 151 --~~------~~~~~v~~d~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~~ 220 (341)
T PRK10703 151 --KA------DFTDAIIDNAFEGGYLAGRYLIERG--HRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQGD 220 (341)
T ss_pred --Cc------CCCCeEEECcHHHHHHHHHHHHHCC--CCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeCC
Confidence 11 21111222322 3455666666543 3689988775432 24556788888765432222211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + ..+++|++++...+. .+++.+.+... .++.+++++..
T Consensus 221 ~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~-g~~~al~~~g~~ip~dv~vvgfD~~ 277 (341)
T PRK10703 221 FEPESGYEAMQQILSQKHRPTAVFCGGDIMAM-GAICAADEMGLRVPQDISVIGYDNV 277 (341)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEECCC
Confidence 111111122222 2 357999999999888 78787776532 35678888664
No 68
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=94.83 E-value=0.89 Score=39.95 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=94.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
..+.+.+++.|+++.....-.-.. .....+.+.+ ...++|+||+++.+. ....++.+.+ .+++++.+|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvv~i~~~~~~- 92 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP-DLAERVRALL-QRSRVDGVILTPPLSDNPELLDLLDE---AGVPYVRIAPGTPD- 92 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHH-HHCCCCEEEEeCCCCCccHHHHHHHh---cCCCEEEEecCCCC-
Confidence 345567788898887654321110 0011233333 225789999987642 2233344433 46789999865321
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchh-------hHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~-------~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. ............+...++.|.+. ..++++++.+..... -+.+.+++.|..+....++....
T Consensus 93 ---~------~~~~V~~d~~~~g~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd01545 93 ---P------DSPCVRIDDRAAAREMTRHLIDL--GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDF 161 (270)
T ss_pred ---C------CCCeEEeccHHHHHHHHHHHHHC--CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 1 21111111122334455555554 346888887655432 24555666776552212222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
......+..+. + ..+++|+.++...+. .+++.+.+... .++.+++++...
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~-~~~~~~~~~g~~~p~~i~vig~d~~~ 218 (270)
T cd01545 162 TFESGLEAAEALLALPDRPTAIFASNDDMAA-GVLAVAHRRGLRVPDDLSVVGFDDTP 218 (270)
T ss_pred ChhhHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEECChh
Confidence 11111122222 2 357899888888887 77777766432 245666666643
No 69
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.80 E-value=0.42 Score=38.55 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=66.4
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHH-----HHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~-----v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+.+.+...|+..|++|..+.++.+. ++..+.. .+.|+|++.|-.+ ++ .+.+.+++....+.++++=
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~------e~~v~aa~e~~adii~iSsl~~~~~~~~~-~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTP------EEIARQAVEADVHVVGVSSLAGGHLTLVP-ALRKELDKLGRPDILVVVG 90 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCH------HHHHHHHHHcCCCEEEEcCchhhhHHHHH-HHHHHHHhcCCCCCEEEEe
Confidence 4567888999999999877776332 2233222 5889999988653 33 3344444432224555543
Q ss_pred ---CHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 262 ---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 262 ---G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
.+.-.+.++++|+..++ ....+..++++.+.+.+.
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~-~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIF-GPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCChHhHHHHHHCCCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 24457789999999865 556699999999988764
No 70
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=94.74 E-value=0.86 Score=40.34 Aligned_cols=181 Identities=10% Similarity=0.000 Sum_probs=93.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~--~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|+++.....-. ..+...-.+.++. ..+.|+||+... ..+...++.+.+ .+++++.+|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (275)
T cd06320 20 GYENEAKKLGVSVDIQAAPS---EGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK---KGIPVVNVNDKLI 93 (275)
T ss_pred HHHHHHHHhCCeEEEEccCC---CCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH---CCCeEEEECCCCC
Confidence 45567788899877543221 1111111122222 246899988653 223334454544 4678999986531
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhC-CCeeEEEeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNTY 210 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~-G~~v~~~~vY 210 (302)
. . .... +.... ..++.+++.|.+.....++++++.|... ..-+.+.+++. |..+.....+
T Consensus 94 ~----~------~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~ 162 (275)
T cd06320 94 P----N------ATAF-VGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPA 162 (275)
T ss_pred C----c------cceE-EecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCC
Confidence 1 1 1111 22222 2345555556544323468998876432 14467788888 8766432111
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
............. + .++++|+..+-..+. .+++.+.+... .++.+++++..
T Consensus 163 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 163 --DWDREKAYDVATTILQRNPDLKAIYCNNDTMAL-GVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred --CccHHHHHHHHHHHHHhCCCccEEEECCchhHH-HHHHHHHhcCCCCCeEEEecCCC
Confidence 1111111111212 2 357888888888887 78787766432 24566666544
No 71
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=94.59 E-value=1.1 Score=36.40 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCCCh-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022128 49 SNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~ 118 (302)
.+++||+.-+.++. .-+...|+..|++++++-.-.. .+++.+...+ .+.|.|.+++. ..++.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp-----~e~i~~~a~~-~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS-----QEEFIDAAIE-TDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHHH-cCCCEEEEcCccccCHHHHHHHH
Confidence 46778887765543 3356688999999998764322 2344444422 45777776653 3445566
Q ss_pred HHHHHcCCCCceEEEEChhh-----H----HHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 119 EAWKEAGTPNVRIGVVGAGT-----A----SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~T-----a----~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
+.+++.+.+++++++-|.-+ . +.+++. |+...|.|.. +.+..+..|.+.
T Consensus 76 ~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~------G~~~vf~~~~-~~~~i~~~l~~~ 133 (137)
T PRK02261 76 EKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM------GFDRVFPPGT-DPEEAIDDLKKD 133 (137)
T ss_pred HHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHHH
Confidence 67777777788888888652 2 478888 9988776554 566666666543
No 72
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.50 E-value=2 Score=37.78 Aligned_cols=179 Identities=9% Similarity=0.061 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|+++...... .+.+...+.++ .-..+|+||+++.. .-..+.+ +.. .+++++++|.....
T Consensus 20 gi~~~~~~~gy~v~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~-~~~---~~~pvV~i~~~~~~ 90 (269)
T cd06293 20 AVEEEADARGLSLVLCATR-----NRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAK-LIN---SYGNIVLVDEDVPG 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHH-HHh---cCCCEEEECCCCCC
Confidence 3456778889888655322 12221222222 23569999998531 1122222 222 36789999965421
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. .+.. +.++. ..+...++.|.+. ..++++++.|... ..-+.+.|++.|..+....++..
T Consensus 91 ----~------~~~~-V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~ 157 (269)
T cd06293 91 ----A------KVPK-VFCDNEQGGRLATRHLARA--GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFG 157 (269)
T ss_pred ----C------CCCE-EEECCHHHHHHHHHHHHHC--CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEec
Confidence 1 2211 22222 3345555666654 3468998876533 23466777788765543233322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
........+.... + ..+++|+..+-..+. ..++.+.+... .++.+++++...
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vp~di~i~g~d~~~ 216 (269)
T cd06293 158 DYTREFGRAAAAQLLARGDPPTAIFAASDEIAI-GLLEVLRERGLSIPGDMSLVGFDDVG 216 (269)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCccceEEEeecCch
Confidence 1111111122222 2 247999999988887 67777766432 357888887643
No 73
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.36 E-value=0.8 Score=40.32 Aligned_cols=179 Identities=9% Similarity=0.044 Sum_probs=94.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+...+++.|++++.+.. . .+.+.....++ .-..+|+||+++...-..... +.. .+++++.+|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~-~~~---~~iPvV~~~~~~~- 88 (263)
T cd06280 19 RAVEDAAYRAGLRVILCNT---D--EDPEKEAMYLELMEEERVTGVIFAPTRATLRRLA-ELR---LSFPVVLIDRAGP- 88 (263)
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCchHHH-HHh---cCCCEEEECCCCC-
Confidence 3455678888998864321 1 12222222222 225689999988653322222 222 3678999987642
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. .+..........+..+++.|.+.. .+++.++.|... ..-+.+.+.+.|.......+ ..
T Consensus 89 ---~~------~~~~v~~d~~~~g~~a~~~L~~~g--~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~---~~ 154 (263)
T cd06280 89 ---AG------RVDAVVLDNRAAARTLVEHLVAQG--YRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV---AP 154 (263)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHCC--CceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc---cc
Confidence 11 222222222233455666665542 357888876432 13455667777765432111 11
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
......+.... + ..+++|+.+|...+. .+++.+.+... .++.+++++....
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~~p~di~iig~d~~~~ 212 (263)
T cd06280 155 TAEAAEAALAAWLAAPERPEALVASNGLLLL-GALRAVRAAGLRIPQDLALAGFDNDPW 212 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCcEEEEEeCChhH
Confidence 11111112222 2 257899999988888 77777776542 3567777766543
No 74
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=94.22 E-value=0.82 Score=40.11 Aligned_cols=193 Identities=12% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.+++.|+++..+ .. ...|.+...+.++++ .++|+||++.... ...+++.+.+ .+++++.+...
T Consensus 18 ~g~~~~a~~~g~~~~~~--~~--~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~---~gIpvv~~d~~- 89 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIV--FD--AQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKA---AGIPVVTVDSD- 89 (257)
T ss_dssp HHHHHHHHHHTCEEEEE--EE--STTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHH---TTSEEEEESST-
T ss_pred HHHHHHHHHcCCEEEEe--CC--CCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhh---cCceEEEEecc-
Confidence 34566778889999887 11 112322222233222 5699999875443 4556666665 36799998887
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcchh-------hHHHHHHhCCCeeEEEeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~-------~L~~~L~~~G~~v~~~~vY 210 (302)
... .. .....+.+.. ..+..+++.|.+....+.+++++.|..+.. -+.+.|++.+ .+..+..|
T Consensus 90 -~~~-~~------~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~~~ 160 (257)
T PF13407_consen 90 -EAP-DS------PRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVDEY 160 (257)
T ss_dssp -HHT-TS------TSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEEEE
T ss_pred -ccc-cc------cceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeeeee
Confidence 111 11 1212222222 234555566655444447899887766533 4556677754 55555543
Q ss_pred eeecCCCCcH---HHHHH-c--CCCCEEEEECcHHHHHHHHHhhhcccCC-CceEEEE--CHHHHHHHHHcCCC
Q 022128 211 TTEPVHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSSWVNLISDTEQW-SNSVACI--GETTASAAKRLGLK 275 (302)
Q Consensus 211 ~~~~~~~~~~---~~~~~-~--~~~d~ivftS~s~v~~~~~~~l~~~~~~-~~~i~~I--G~~Ta~~l~~~G~~ 275 (302)
.. .....+ +.... + .++++|+.++...+. ...+.+.+.... +..++++ .+.+.+.+++-.+.
T Consensus 161 ~~--~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~-g~~~al~~~g~~~~~~v~g~d~~~~~~~~i~~g~~~ 231 (257)
T PF13407_consen 161 EY--TDWDPEDARQAIENLLQANPVDAIIACNDGMAL-GAAQALQQAGRAGKVIVVGFDGSPEALEAIKDGNIT 231 (257)
T ss_dssp EE--CTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEEECHHHHHHHHHTTSSS
T ss_pred ec--cCCCHHHHHHHHHHhhhcCCceEEEeCCChHHH-HHHHHHHHcCCcccceeecCCCCHHHHHHHHCCCCe
Confidence 32 122221 11111 2 237888888888888 788888775432 3345554 45555666554444
No 75
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.15 E-value=1.6 Score=39.32 Aligned_cols=186 Identities=10% Similarity=0.033 Sum_probs=91.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.+++.|++++.+..- . .+.+...+.++. -.+.|+||+.+.. .....++.+.+ .+++++.++.....
T Consensus 21 i~~~a~~~g~~~~~~~~~--~--~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 93 (294)
T cd06316 21 AKDEFAKLGIEVVATTDA--Q--FDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAE---AGIKLVFMDNVPSG 93 (294)
T ss_pred HHHHHHHcCCEEEEecCC--C--CCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHH---cCCcEEEecCCCcc
Confidence 456678889988743111 1 122211122222 2568999885532 23444455544 36788888864311
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.... .++...+..+. ..+..+++.|.......++|.++.+.... .-+.+.|++++..+..+.....
T Consensus 94 -~~~~-----~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 167 (294)
T cd06316 94 -LEHG-----KDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGI 167 (294)
T ss_pred -cccC-----cceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHHHHHhCCCcEEEeecCC
Confidence 1110 01111111222 22334445554432234789888775432 3345566655432221211110
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~T 265 (302)
. ......+..+. + .++++|+.+|-..+. .+++.+.+....++.++++|..+
T Consensus 168 ~-~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~di~vvg~d~~~ 222 (294)
T cd06316 168 D-GPSKAEDIANAMLTQNPDLKGIYAVWDVPAE-GVIAALRAAGRDDIKVTTVDLGL 222 (294)
T ss_pred c-chhHHHHHHHHHHHhCCCeeEEEeCCCchhH-HHHHHHHHcCCCCceEEEeCCCc
Confidence 0 01111112222 2 357888888888888 78888876543467888887543
No 76
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=94.15 E-value=1.5 Score=38.32 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+.+.....-.- .......+.+.+ .-.+.|+||+.+...-........+ .+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~--- 90 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEA-DEEALRAAVRRL-LAQRVDGVIVNAPLDDADAALAAAP---ADVPVVFVDGSPS--- 90 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCC-chHHHHHHHHHH-HhcCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEeccCC---
Confidence 3456677788988775522110 001111122222 1246899998775432211222222 4688999987542
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
. .+..........+..+++.|.+. ..++|+++.|.... .-+.+.|++.|..+... +.....
T Consensus 91 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~--~~~~~~ 158 (264)
T cd01574 91 --P------RVSTVSVDQEGGARLATEHLLEL--GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPV--LEGDWS 158 (264)
T ss_pred --C------CCCEEEeCcHHHHHHHHHHHHHC--CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCccee--eecCCC
Confidence 1 22221121223345555666654 34689999776442 23667777777665321 211111
Q ss_pred CCCcHHHHHHc---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 216 HHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 216 ~~~~~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.....+....+ ..+++|+.++...+. .+.+.+.+... .++.+++++..
T Consensus 159 ~~~~~~~~~~~l~~~~~~ai~~~~d~~a~-g~~~~~~~~g~~ip~~i~ii~~d~~ 212 (264)
T cd01574 159 AESGYRAGRELLREGDPTAVFAANDQMAL-GVLRALHELGLRVPDDVSVVGFDDI 212 (264)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCccceEEecccCc
Confidence 11111222222 237898888888877 77777765431 34677777653
No 77
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.96 E-value=1 Score=39.40 Aligned_cols=174 Identities=14% Similarity=0.114 Sum_probs=92.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+.+.++++|+.+.....-.- .+. +.++..+ -.+.|+||+.+...-...++.+.+ .+++++.+|..+..
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~---~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~-- 89 (266)
T cd06278 20 ALSRALQARGYQPLLINTDDD---EDLDAALRQLL--QYRVDGVIVTSGTLSSELAEECRR---NGIPVVLINRYVDG-- 89 (266)
T ss_pred HHHHHHHHCCCeEEEEcCCCC---HHHHHHHHHHH--HcCCCEEEEecCCCCHHHHHHHhh---cCCCEEEECCccCC--
Confidence 456778889998875543210 011 1122222 257899999764322222444433 46789999875421
Q ss_pred HHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. .+.. +..+ ...+..+++.|.+. ..++|+++.+.... .-+.+.+++.|..+.. ..+
T Consensus 90 --~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~-~~~---- 153 (266)
T cd06278 90 --P------GVDA-VCSDNYEAGRLAAELLLAK--GCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV-EEA---- 153 (266)
T ss_pred --C------CCCE-EEEChHHHHHHHHHHHHHC--CCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhh-hcc----
Confidence 1 2211 1222 22345555666654 24689999876542 3456677777765321 111
Q ss_pred CCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcc-c---CCCceEEEECHH
Q 022128 215 VHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDT-E---QWSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~-~---~~~~~i~~IG~~ 264 (302)
.....+ +.... + ..+++|+.++...+. ..++.+.+. . ..++.+++++..
T Consensus 154 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~-~~~~~l~~~~~~~~p~di~i~~~d~~ 213 (266)
T cd06278 154 GDYSYEGGYEAARRLLASRPRPDAIFCANDLLAI-GVMDAARQEGGLRVPEDVSVIGFDDI 213 (266)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH-HHHHHHHHhcCCCCccceEEEEeCCh
Confidence 111111 11112 2 357899988888777 677777653 1 134677777654
No 78
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=93.83 E-value=3.3 Score=36.54 Aligned_cols=178 Identities=11% Similarity=0.054 Sum_probs=94.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEE
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~a-----v~~f~~~l~~~~~~~~~i~aV 134 (302)
.+.+.++++|++++.... . .+. +.++..+ -.++|+||+++... ...+++.+.+ .+++++.+
T Consensus 20 gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~--~~~vdgii~~~~~~~~~~~~~~~~~~~~~---~~ipvV~~ 89 (273)
T cd01541 20 GIESVLSEKGYSLLLAST---N--NDPERERKCLENML--SQGIDGLIIEPTKSALPNPNIDLYLKLEK---LGIPYVFI 89 (273)
T ss_pred HHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHH--HcCCCEEEEeccccccccccHHHHHHHHH---CCCCEEEE
Confidence 456677888999875432 1 122 1233332 25799999976432 2233344433 36789999
Q ss_pred ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEe
Q 022128 135 GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 135 G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~ 208 (302)
|..... . ++..........+..+++.|.+.. .++++++.+... ..-+.+.|++.|..+....
T Consensus 90 ~~~~~~----~------~~~~V~~D~~~~g~~~~~~l~~~G--~~~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~ 157 (273)
T cd01541 90 NASYEE----L------NFPSLVLDDEKGGYKATEYLIELG--HRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSN 157 (273)
T ss_pred ecCCCC----C------CCCEEEECcHHHHHHHHHHHHHcC--CcCEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHH
Confidence 865311 1 222111112223455556666543 357877755322 1235677788876543322
Q ss_pred eeeeecCCC--CcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 209 TYTTEPVHH--VDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 209 vY~~~~~~~--~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
++....... ...+..+. + ..+|+|+.+|-..+. .+++.+.+... .++.+++++-.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~-g~~~al~~~g~~~p~dv~vvg~d~~ 221 (273)
T cd01541 158 VITYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIAL-RVIDLLKELGLKIPEDISVVGFDDS 221 (273)
T ss_pred EEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCcEEEEEcCCc
Confidence 322111111 11122222 2 358999999988888 78777776432 35677777543
No 79
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=93.67 E-value=2.5 Score=36.71 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=91.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH--HHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av--~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|+++..++.-. .+......+...+ . .+.|+||+.+...- ....+.+.+ .++++++++.....
T Consensus 21 ~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~-~-~~vdgvi~~~~~~~~~~~~~~~l~~---~~ip~V~~~~~~~~-- 92 (267)
T cd01536 21 AEAAAKELGVELIVLDAQN-DVSKQIQQIEDLI-A-QGVDGIIISPVDSAALTPALKKANA---AGIPVVTVDSDIDG-- 92 (267)
T ss_pred HHHHHHhcCceEEEECCCC-CHHHHHHHHHHHH-H-cCCCEEEEeCCCchhHHHHHHHHHH---CCCcEEEecCCCCc--
Confidence 4455667888887755532 1100011232322 2 37999998765432 224444444 46788888875421
Q ss_pred HHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCC-CeeEEEeeeeee
Q 022128 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTE 213 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G-~~v~~~~vY~~~ 213 (302)
.. .+.. +.+. ...+..+++.|.+.....++++++.+... ..-+.+.+++.| ..+.. ++...
T Consensus 93 -~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~--~~~~~ 162 (267)
T cd01536 93 -GN------RLAY-VGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVA--VQDGN 162 (267)
T ss_pred -cc------eeEE-EecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEE--EecCC
Confidence 11 2221 2222 22344555565544223478888866532 245677788874 44322 21111
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
.......+.... + ..+++|+.++...+. .+++.+.+... .++.++..+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~-~~~~~l~~~g~~~~i~ivg~d~~ 217 (267)
T cd01536 163 WDREKALQAMEDLLQANPDIDAIFAANDSMAL-GAVAALKAAGRKGDVKIVGVDGS 217 (267)
T ss_pred CcHHHHHHHHHHHHHhCCCccEEEEecCCchH-HHHHHHHhcCCCCCceEEecCCC
Confidence 111111112222 2 347888888877777 67777766432 24667666643
No 80
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=93.35 E-value=5.8 Score=35.67 Aligned_cols=178 Identities=9% Similarity=0.088 Sum_probs=94.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+...++++|++++.+... .+.+...+.++. ..+.|+||+++... ....++.+.+ .+++++.++...
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~-----~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 117 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQ-----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRGA 117 (295)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCCEEEEccCC
Confidence 34556778899998765321 122222222222 24689899876432 1223333433 467898888543
Q ss_pred HHHHHHHhhccCCCCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY 210 (302)
.. .. .+.. +.++.+. +..+++.|.+....+.+++++.|... ..-+.+.+++.|.++.. .+
T Consensus 118 ~~---~~------~~~~-V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~ 185 (295)
T PRK10653 118 TK---GE------VVSH-IASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLA--SQ 185 (295)
T ss_pred CC---Cc------eeeE-EccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEE--ec
Confidence 10 01 1221 2233333 45566666654322246776655422 24567888888865521 22
Q ss_pred eeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 211 TTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 211 ~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
. ...... +.... + ..+++|+.++-..+. .+++.+.+....++.+++++..
T Consensus 186 ~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~l~al~~~G~~dv~vig~d~~ 242 (295)
T PRK10653 186 P---ADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMAL-GALRALQTAGKSDVMVVGFDGT 242 (295)
T ss_pred C---CCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHH-HHHHHHHHcCCCceEEEEeCCC
Confidence 1 111111 11111 2 347899998888887 7777777654446778887654
No 81
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.31 E-value=2.7 Score=37.01 Aligned_cols=179 Identities=11% Similarity=0.057 Sum_probs=92.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++..+.-. .. .....+.+.+ .-.++|+||+.+...-.. ++.+.+ .+++++.++..- .
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~-~~~l~~---~~ipvV~~~~~~----~ 91 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSD-ED-EEEFELPSFL-EDGKVDGIILLGGISTEY-IKEIKE---LGIPFVLVDHYI----P 91 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCC-Ch-HHHHHHHHHH-HHCCCCEEEEeCCCChHH-HHHHhh---cCCCEEEEccCC----C
Confidence 45566777898887654311 10 0111222222 125799999988543322 343433 367888887542 1
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.. ++..........+..+++.|.+. ..++++++.+.... .-+.+.+++.|..+....++... .
T Consensus 92 ~~------~~~~V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~--~ 161 (268)
T cd06277 92 NE------KADCVLTDNYSGAYAATEYLIEK--GHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEK--E 161 (268)
T ss_pred CC------CCCEEEecchHHHHHHHHHHHHC--CCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcc--h
Confidence 11 33221121122233344555443 24689998766531 23567777888765443332211 1
Q ss_pred CCcH---HHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 217 HVDQ---TVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 217 ~~~~---~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.... ++++.. ..+++|+..+...+. .+...+.+... .++.+++++..
T Consensus 162 ~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~a~~~~g~~~p~di~vig~d~~ 215 (268)
T cd06277 162 EDEEDIGKFIDELKPLPTAFFCSNDGVAF-LLIKVLKEMGIRVPEDVSVIGFDDI 215 (268)
T ss_pred hHHHHHHHHHhcCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCcceEEeecCc
Confidence 1111 122222 347888888888777 67776665432 35667777654
No 82
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=92.98 E-value=5.3 Score=36.41 Aligned_cols=177 Identities=10% Similarity=0.079 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|+.++...... +.+...+.+.. -.+.|+||+.+... ....++.+.+ .+++++.+|....
T Consensus 81 ~i~~~~~~~gy~~~i~~~~~-----~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 151 (327)
T TIGR02417 81 ELEQQCREAGYQLLIACSDD-----NPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQN---EGLPVVALDRSLD- 151 (327)
T ss_pred HHHHHHHHCCCEEEEEeCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHh---cCCCEEEEccccC-
Confidence 45556678899987654321 21211222222 25689999876432 2233344443 3678999986531
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++.. +..+.+ .+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+. .++..
T Consensus 152 ---~~------~~~~-V~~dn~~~~~~~~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~--~~~~~ 217 (327)
T TIGR02417 152 ---DE------HFCS-VISDDVDAAAELIERLLSQH--ADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVE--WVYGG 217 (327)
T ss_pred ---CC------CCCE-EEeCcHHHHHHHHHHHHHCC--CCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChH--hEEeC
Confidence 11 2322 222332 3444556665543 3689999875431 335677788886532 12221
Q ss_pred ecCCCCcHHHHHH-c---C-CCCEEEEECcHHHHHHHHHhhhccc--CCCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSSWVNLISDTE--QWSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~-~~d~ivftS~s~v~~~~~~~l~~~~--~~~~~i~~IG~~ 264 (302)
........+.... + . .+++|+..+-..+. .++..+.+.. ..++.+++++..
T Consensus 218 ~~~~~~~~~~~~~ll~~~~~~~~Ai~~~~D~~A~-g~~~al~~~g~vP~dvsvigfd~~ 275 (327)
T TIGR02417 218 NYSRESGYQMFAKLCARLGRLPQALFTTSYTLLE-GVLDYMLERPLLDSQLHLATFGDN 275 (327)
T ss_pred CCChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEEECCc
Confidence 1111111122222 2 2 47888888877776 6666665543 235677777754
No 83
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=92.90 E-value=3.2 Score=37.81 Aligned_cols=190 Identities=11% Similarity=0.090 Sum_probs=84.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeee-CCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEECh--
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQ-GPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA-- 136 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~-~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~-- 136 (302)
.+-+.+.|++.|+....+ .|+... ..|...+.+.++. -.++|.|+-+...+.....+.+.. +++++..|-
T Consensus 17 ~~gf~~~L~~~g~~~~~~-~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~----~iPVVf~~V~d 91 (294)
T PF04392_consen 17 VRGFKDGLKELGYDEKNV-EIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD----DIPVVFCGVSD 91 (294)
T ss_dssp HHHHHHHHHHTT--CCCE-EEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS-----S-EEEECES-
T ss_pred HHHHHHHHHHcCCccccE-EEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC----CcEEEEEeccC
Confidence 345778889999887111 122222 2344555555543 357999998888888776655422 267766554
Q ss_pred -hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCC-Ccc-----hhhHHHHHHhCCCeeEEEee
Q 022128 137 -GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS-AKA-----SNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 137 -~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg-~~~-----~~~L~~~L~~~G~~v~~~~v 209 (302)
..+...... .. .|-.+.-+-.....+.-++.+.+....-++|.++-. ... .+.+.+..++.|+++..+.+
T Consensus 92 p~~~~l~~~~-~~--~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v 168 (294)
T PF04392_consen 92 PVGAGLVDSL-DR--PGKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPV 168 (294)
T ss_dssp TTTTTS-S-S-SS----SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hhhhhccccc-cC--CCCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEec
Confidence 111111111 00 011111111222334444555554444467744432 222 34667777888988766554
Q ss_pred eeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 210 YTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
-. ..+.....+.+ .+.|++++.....+.+.+...+......++++++..+
T Consensus 169 ~~----~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~~ 219 (294)
T PF04392_consen 169 PS----SEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSSD 219 (294)
T ss_dssp SS----GGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESSH
T ss_pred Cc----HhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECCH
Confidence 22 12223334444 6789888888777762333322222223466666543
No 84
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=92.80 E-value=3.8 Score=37.73 Aligned_cols=178 Identities=8% Similarity=0.027 Sum_probs=90.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCce-EEEEChhhHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTASI 141 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~-i~aVG~~Ta~~ 141 (302)
+.+.++++|+.++..... .+.+...+.++. -.+.|+||+.+...-...+..+.+ +++ +++++....
T Consensus 81 i~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~~-- 149 (343)
T PRK10727 81 VEQVAYHTGNFLLIGNGY-----HNEQKERQAIEQLIRHRCAALVVHAKMIPDAELASLMK----QIPGMVLINRILP-- 149 (343)
T ss_pred HHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh----cCCCEEEEecCCC--
Confidence 445667789886543321 122211222222 257899999764211112222222 344 777875421
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +..+.+ .+...++.|.+.. .++|.++.|... ..-+.+.|++.|..+....++...
T Consensus 150 --~~------~~~~-V~~Dn~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~ 218 (343)
T PRK10727 150 --GF------ENRC-IALDDRYGAWLATRHLIQQG--HTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGE 218 (343)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHCC--CccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCC
Confidence 11 2221 222332 2333445555542 368998876543 134667888888765433232211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+..+. + ..+++|+..+-..+- .+++.+.+.+. .++.+++++..-
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disVigfD~~~ 276 (343)
T PRK10727 219 PDESGGEQAMTELLGRGRNFTAVACYNDSMAA-GAMGVLNDNGIDVPGEISLIGFDDVL 276 (343)
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceeEEeecCcH
Confidence 111111122222 2 247899888888777 67777766532 357788887653
No 85
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.78 E-value=2 Score=38.30 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+.++.++..+ +.+ .+ .-.+.|+||+.+...-...++.+.+ .+++++.+|.....
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-----~~~----~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~-- 91 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-----ADS----PL-DALDIDGAILVEPMADDPQVARLRQ---RGIPVVSIGRPPGD-- 91 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----chh----hh-hccCcCeEEEecCCCCCHHHHHHHH---cCCCEEEeCCCCCC--
Confidence 456678889999998876541 111 23 2357999999875432222333433 36789999864310
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
.. ++..........+..+++.|.+.. -++|+++.+... ..-+.+.+++.|..+..+.+ ....
T Consensus 92 -~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~--~~~~ 160 (269)
T cd06287 92 -RT------DVPYVDLQSAATARMLLEHLRAQG--ARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRV--DEAG 160 (269)
T ss_pred -CC------CCCeEeeCcHHHHHHHHHHHHHcC--CCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEe--cCCC
Confidence 11 333222222233455666666543 357988876432 12356677788876532111 1111
Q ss_pred CCCc-HHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEE
Q 022128 216 HHVD-QTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVAC 260 (302)
Q Consensus 216 ~~~~-~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~ 260 (302)
.... .+..+. + ..+++|+.+|-..+. ..++.+.+... .++.+++
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 161 GEEAGYAACAQLLAQHPDLDALCVPVDAFAV-GAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEe
Confidence 1111 122222 2 257999999988888 77777776532 2455555
No 86
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=92.62 E-value=4.2 Score=36.11 Aligned_cols=179 Identities=12% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|++++..+... + .+.....+.+ .-.+.|.||+++...-....+.+.+ ..+++++.+|....
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~--~-~~~~~~i~~l-~~~~vdgiI~~~~~~~~~~~~~~~~--~~~~PiV~i~~~~~--- 92 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKS--D-ADYEPNLEQL-ADAGYDLIVGVGFLLADALKEVAKQ--YPDQKFAIIDAVVD--- 92 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCC--H-HHHHHHHHHH-HhCCCCEEEEcCcchHHHHHHHHHH--CCCCEEEEEecccC---
Confidence 345577788999988875431 1 1111112222 2267999999875433333333332 13678999986431
Q ss_pred HH-HhhccCCCCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcc-----h-hhHHHHHHhCC---CeeEEEeeee
Q 022128 143 EE-VIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA-----S-NEIEEGLSNRG---FEVVRLNTYT 211 (302)
Q Consensus 143 ~~-~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~-----~-~~L~~~L~~~G---~~v~~~~vY~ 211 (302)
. . ++.. +....+. +..+...+... ...++|.++.+... + .-+.+.+++.| ..+....++.
T Consensus 93 -~~~------~~~~-v~~d~~~a~~~a~~ll~~~-~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~ 163 (265)
T cd06354 93 -DPP------NVAS-IVFKEEEGSFLAGYLAALM-TKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYA 163 (265)
T ss_pred -CCC------cEEE-EEecchhHHHHHHHHHHhh-cCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 1 1 2322 1122222 22222222221 13468999876432 1 34566667777 5544433333
Q ss_pred eecCC-CCcHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 212 TEPVH-HVDQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 212 ~~~~~-~~~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
..... ....+..+. + ..+|+|+.++-..+- .+++.+++.. +.++.++.
T Consensus 164 ~~~~~~~~~~~~~~~ll~~~pdaI~~~nd~~A~-gv~~al~~~g---isIvGfD~ 214 (265)
T cd06354 164 GSFNDPAKGKEIAQAMYDQGADVIFAAAGGTGN-GVFQAAKEAG---VYAIGVDS 214 (265)
T ss_pred CcccCHHHHHHHHHHHHHCCCcEEEECCCCCch-HHHHHHHhcC---CeEEEecC
Confidence 22111 111222223 2 357998888877777 6767776543 55555555
No 87
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.50 E-value=1.5 Score=35.10 Aligned_cols=97 Identities=20% Similarity=0.245 Sum_probs=65.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.-....|+.+|++|+.+..-... +++-+.. .-.+.|.|..+|-+ .++.+.+.+++.++.++++++=|.-
T Consensus 17 niv~~~L~~~GfeVidLG~~v~~-----e~~v~aa-~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGVLSPQ-----EEFIDAA-IETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 34667899999999988765432 2333333 22467888776633 3566677777888877888877753
Q ss_pred h---------HHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 138 T---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 138 T---------a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
. ...|++. |+...|.|.. +.+.++..|.
T Consensus 91 ~i~~~d~~~~~~~L~~~------Gv~~vf~pgt-~~~~i~~~l~ 127 (128)
T cd02072 91 VVGKQDFEDVEKRFKEM------GFDRVFAPGT-PPEEAIADLK 127 (128)
T ss_pred CCChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHh
Confidence 2 2458888 9988787654 6777766664
No 88
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=92.46 E-value=1.5 Score=38.85 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|+++..+.. . ..+.+...+.+.. ..+.|++|+.+.. +....+..+. . +++++.+|...
T Consensus 18 ~gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~---~-~ipvV~~~~~~ 89 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVP---Q-QGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAA---A-GIKLITTDSDA 89 (271)
T ss_pred HHHHHHHHHcCCeEEEeCC---C-CCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHh---c-CCCEEEecCCC
Confidence 3455667888998876521 0 1122212222222 2579999997643 2222333332 2 67899998643
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (302)
... . .+. .+..+. ..+..+++.|.+....+++++++.|.... .-+.+.+++.|..+.. .+
T Consensus 90 ~~~--~-------~~~-~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~ 157 (271)
T cd06314 90 PDS--G-------RYV-YIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVD--TR 157 (271)
T ss_pred Ccc--c-------eeE-EEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEE--Ee
Confidence 110 0 111 111222 23344555554433235677666665331 3467778888866543 11
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHHH
Q 022128 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETTA 266 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~Ta 266 (302)
..........+..+. + ..+++|+..+...+. .+++.+.+... .++.++.++....
T Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~-~~~~al~~~g~~~di~vig~d~~~~ 217 (271)
T cd06314 158 GDEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGP-AIAEAVKAAGKLGKVKIVGFDEDPD 217 (271)
T ss_pred cCccCHHHHHHHHHHHHHhCCCccEEEecCCccHH-HHHHHHHHcCCCCceEEEEeCCCHH
Confidence 111110111112222 2 356888777766666 66666665432 3567888877643
No 89
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.36 E-value=4.9 Score=35.42 Aligned_cols=217 Identities=14% Similarity=0.052 Sum_probs=105.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|+++.....-. .+.+...+.++. -.+.|+||+++.. .+...++.+.+ .+++++.++...
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET----FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA---AGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC----CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCeEEEeCCCC
Confidence 345566777898887654321 022222222222 2478999998754 23334444444 367899998542
Q ss_pred HHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
.. .... ..+..........+..+++.|.+. ...++++++.|... ..-+.+.+++.|..+. .+.
T Consensus 93 ~~-~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~-~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~---~~~ 162 (271)
T cd06312 93 PK-YKEL-----GALAYVGQDEYAAGEAAGERLAEL-KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEE---VIE 162 (271)
T ss_pred Cc-cccc-----cceEEeccChHHHHHHHHHHHHHh-cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceee---Eee
Confidence 11 0000 011111111122344455556552 23468888876432 2234556666665432 121
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHHHH--HHHHcCCC--eEEecCC
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETTAS--AAKRLGLK--NVYYPTH 282 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~Ta~--~l~~~G~~--~~~v~~~ 282 (302)
.........+..+. + .++++|+.++...+. ...+.+.+... .++.+++++..-.. ++. .|.. .+..+..
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~-g~~~al~~~g~~~di~vvg~d~~~~~~~~l~-~g~~~~tv~~~~~ 240 (271)
T cd06312 163 TGADPTEVASRIAAYLRANPDVDAVLTLGAPSAA-PAAKALKQAGLKGKVKLGGFDLSPATLQAIK-AGYIQFAIDQQPY 240 (271)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEeCCccch-HHHHHHHhcCCCCCeEEEEecCCHHHHHHHh-cCceEEEEecCch
Confidence 11111111112222 2 358999999988787 67777766432 35678888654332 243 2432 2222222
Q ss_pred CChHHHHHHHHHHHHc
Q 022128 283 PGLEGWVDSILEALRE 298 (302)
Q Consensus 283 ~~~~~ll~~i~~~~~~ 298 (302)
.--...++.+.+.+..
T Consensus 241 ~~g~~a~~~l~~~~~~ 256 (271)
T cd06312 241 LQGYLPVSLLWLYKRY 256 (271)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 2233455556666554
No 90
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=92.22 E-value=5.3 Score=36.86 Aligned_cols=179 Identities=10% Similarity=0.082 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCc-eEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNV-RIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~-~i~aVG~~Ta~ 140 (302)
.+.+.++++|+.++..... .+.+...+.++. -...|+||+.+...-......+.+ .. +++.++....
T Consensus 80 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~~- 149 (346)
T PRK10401 80 AVDLVAQQHQKYVLIGNSY-----HEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMD----QIPGMVLINRVVP- 149 (346)
T ss_pred HHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHh----cCCCEEEEecccC-
Confidence 3455677889887654321 122222222222 256999999863211111222222 23 3777775321
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++.. +..+. ..+...++.|.... .++|.++.|... ..-+.+.|++.|..+....++..
T Consensus 150 ---~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (346)
T PRK10401 150 ---GY------AHRC-VCLDNVSGARMATRMLLNNG--HQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTG 217 (346)
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecC
Confidence 11 2222 12222 22344455565443 468988876542 13456788888876543333332
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
........+..+. + ..+++|+..+-..+. .+++.+.+.+. .++.++.++...
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvigfD~~~ 276 (346)
T PRK10401 218 TPDMQGGEAAMVELLGRNLQLTAVFAYNDNMAA-GALTALKDNGIAIPLHLSIIGFDDIP 276 (346)
T ss_pred CCChHHHHHHHHHHHcCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEeCCch
Confidence 2111111122222 2 247999999988888 78787776532 356788777653
No 91
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=92.05 E-value=1.6 Score=39.46 Aligned_cols=191 Identities=10% Similarity=0.094 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..+.+.++++|+++..+ +.- .+.+...+.++. -.+.|+||+++.. ++...++.+.+ .+++++.++..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~-----~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~---~~iPvV~v~~~ 90 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTT-----ADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE---AGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEEcCC
Confidence 34556677889888753 322 122222223322 2468999998653 23444444443 46788888853
Q ss_pred hHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCe-eEEEe
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFE-VVRLN 208 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~-v~~~~ 208 (302)
... ... ++.+ ...+. ..+..+++.|.+.....++|+++.|.... .-+.+.|+++|.. +..+.
T Consensus 91 ~~~--~~~------~~~~-v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~ 161 (298)
T cd06302 91 VQP--DNR------DYDI-EQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYPMLELVD 161 (298)
T ss_pred CCC--Ccc------eeEE-eccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCCCeEEeC
Confidence 211 001 1211 11222 23344556665543223589988764432 3456778887732 22222
Q ss_pred eeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH--HHHHHHH
Q 022128 209 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET--TASAAKR 271 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~--Ta~~l~~ 271 (302)
++..........+.... + ..+++|+.++-..+. ..++.+.+... .++.++.++.. +++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~-g~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~ 230 (298)
T cd06302 162 RQYGDDDADKSYQTAQELLKAYPDLKGIIGPTSVGIP-GAARAVEEAGLKGKVAVTGLGLPNQMAPYVKS 230 (298)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchh-HHHHHHHhcCCCCCEEEEEeCCCHHHHHHHhC
Confidence 32211111111112222 2 357888888777777 77777776533 35677777654 3445554
No 92
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=91.88 E-value=8.5 Score=33.94 Aligned_cols=200 Identities=12% Similarity=0.014 Sum_probs=104.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+.++.... .. .. .. ....+|.+|+.+...- ..++.+.+ .+++++.++.....
T Consensus 24 ~gi~~~~~~~g~~~~~~~~------~~-~~-~~---~~~~vdgii~~~~~~~-~~~~~~~~---~~~pvV~~~~~~~~-- 86 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR------DD-DL-LE---ILEDVDGIIAIGKFSQ-EQLAKLAK---LNPNLVFVDSNPAP-- 86 (270)
T ss_pred HHHHHHHHHcCCEEEEEec------cc-hh-HH---hccCcCEEEEecCCCH-HHHHHHHh---hCCCEEEECCCCCC--
Confidence 3456778889999887654 11 11 11 2367899998754322 22333333 35789999865421
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------------hhhHHHHHHhCCCeeEEEeee
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------------~~~L~~~L~~~G~~v~~~~vY 210 (302)
. .+..........+..+++.|.+. ..++++++.+... ..-+.+.|.+.|. .....++
T Consensus 87 --~------~~~~v~~D~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~-~~~~~~~ 155 (270)
T cd01544 87 --D------GFDSVVPDFEQAVEKALDYLLEL--GHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGL-YDPELIY 155 (270)
T ss_pred --C------CCCEEEECHHHHHHHHHHHHHHc--CCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCC-CChheEe
Confidence 1 23221221122344556666553 3468999987542 2235567777773 2222233
Q ss_pred eeecCCCCcHHHHHH-c-----CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeEEecC
Q 022128 211 TTEPVHHVDQTVLKQ-A-----LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~-----~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~~~~v~~ 281 (302)
..........+..+. + ..+++|+..+...+. .+++.+++... .++.+++.+..- .+.-.+..-..+
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~vp~di~v~g~d~~~--~~~~~~p~lttv-- 230 (270)
T cd01544 156 IGDFTVESGYQLMKEALKSLGDNLPTAFFIASDPMAI-GALRALQEAGIKVPEDVSVISFNDIE--VAKYVSPPLSTV-- 230 (270)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEECChh--HHhhcCCCCcee--
Confidence 322111111122222 2 247899988888888 78888876532 356788887643 233333221112
Q ss_pred CCChHHHHHHHHHH
Q 022128 282 HPGLEGWVDSILEA 295 (302)
Q Consensus 282 ~~~~~~ll~~i~~~ 295 (302)
..+...+.+...+.
T Consensus 231 ~~~~~~~g~~a~~~ 244 (270)
T cd01544 231 KIDTEEMGETAVDL 244 (270)
T ss_pred cCCHHHHHHHHHHH
Confidence 34566665544433
No 93
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=91.85 E-value=0.92 Score=41.07 Aligned_cols=169 Identities=11% Similarity=0.084 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|+.++.+..-. +.+ .++.++.+ .+.|+||++|...=.--+..+.+ .+.+++.+|.....
T Consensus 21 ~gIe~~a~~~Gy~l~l~~t~~-----~~~-~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~---~~iPvV~~~~~~~~ 91 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCNTGD-----DEE-KEEYIELLLQRRVDGIILASSENDDEELRRLIK---SGIPVVLIDRYIDN 91 (279)
T ss_dssp HHHHHHHHHTTCEEEEEEETT-----THH-HHHHHHHHHHTTSSEEEEESSSCTCHHHHHHHH---TTSEEEEESS-SCT
T ss_pred HHHHHHHHHcCCEEEEecCCC-----chH-HHHHHHHHHhcCCCEEEEecccCChHHHHHHHH---cCCCEEEEEeccCC
Confidence 345667788999987643221 211 11333322 57999999987654222333333 27899999987432
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCE-EEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT-VLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~-vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. . ++..........+..+.+.|.+... ++ |+++.|.... .-+.+.|++.|..+....++..
T Consensus 92 ~---~------~~~~V~~D~~~a~~~a~~~Li~~Gh--~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~ 160 (279)
T PF00532_consen 92 P---E------GVPSVYIDNYEAGYEATEYLIKKGH--RRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEG 160 (279)
T ss_dssp T---C------TSCEEEEEHHHHHHHHHHHHHHTTC--CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEES
T ss_pred c---c------cCCEEEEcchHHHHHHHHHHHhccc--CCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCccccccc
Confidence 2 2 4544333222234456667766543 57 8999886542 2367888999997777666554
Q ss_pred ecCCCCcHHHHHHc----CCCCEEEEECcHHHHHHHHHhhhccc
Q 022128 213 EPVHHVDQTVLKQA----LSIPVVAVASPSAVRSSWVNLISDTE 252 (302)
Q Consensus 213 ~~~~~~~~~~~~~~----~~~d~ivftS~s~v~~~~~~~l~~~~ 252 (302)
........+..+.+ ..+|+|+.++-..+. ..++.+.+..
T Consensus 161 ~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~-ga~~~l~~~g 203 (279)
T PF00532_consen 161 DFDYESGYEAARELLESHPDIDAIFCANDMMAI-GAIRALRERG 203 (279)
T ss_dssp SSSHHHHHHHHHHHHHTSTT-SEEEESSHHHHH-HHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHH-HHHHHHHHcC
Confidence 32111111222222 245699999988888 6666666543
No 94
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=91.81 E-value=5.5 Score=35.18 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+...++++|+..+.+....... .+.....+.+..+ .+.|+||+.+.+. ...+++.+.+ .+++++.++.....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~~~ 95 (275)
T cd06307 20 ALEAAAAAFPDARIRVRIHFVES-FDPAALAAALLRLGARSDGVALVAPDHPQVRAAVARLAA---AGVPVVTLVSDLPG 95 (275)
T ss_pred HHHHHHhhhhccCceEEEEEccC-CCHHHHHHHHHHHHhcCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEeCCCCC
Confidence 34456667777666554433221 1222222233221 1799999988653 2344555554 36788888764311
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccC-CCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~-~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
. . .+. .+.... ..+...++.|.+. ..+.++|+++.|... ..-+.+.+++.|..+....++.
T Consensus 96 ~---~------~~~-~V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~ 165 (275)
T cd06307 96 S---P------RAG-YVGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLE 165 (275)
T ss_pred C---c------eee-EEccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeecc
Confidence 0 0 111 111222 2233344455544 223468998877532 1235556776766554333322
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
.........+..+. + .++++|+.++... . .+++.+++... .++.++..+..
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-~-g~~~al~~~g~~~di~Ivg~d~~ 221 (275)
T cd06307 166 GLDDPARAYEATRKLLARHPDLVGIYNAGGGN-R-GVIRALREAGRAGKVVFVGHELT 221 (275)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEEECCCCh-H-HHHHHHHHcCCCCCcEEEEecCC
Confidence 21111111122222 2 3578888887664 6 67777776543 25667777654
No 95
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.75 E-value=3.7 Score=33.00 Aligned_cols=110 Identities=16% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHH
Q 022128 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~~ 119 (302)
+.+|++-....+ ..-....|+..|++|+........ .+-++.+. -.+.|.|+++|-. .+..+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~----e~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTP----EEIARQAV--EADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCH----HHHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHH
Confidence 456666654432 344667889999999998887432 12233333 3578999998866 3455566
Q ss_pred HHHHcCCCCceEEEEChhh---HHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 120 AWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T---a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.+++.+..++++++=|... .+.+++. |+.-.+.|.. +.+..++.+.
T Consensus 76 ~L~~~g~~~i~vivGG~~~~~~~~~l~~~------Gvd~~~~~gt-~~~~i~~~l~ 124 (132)
T TIGR00640 76 ELDKLGRPDILVVVGGVIPPQDFDELKEM------GVAEIFGPGT-PIPESAIFLL 124 (132)
T ss_pred HHHhcCCCCCEEEEeCCCChHhHHHHHHC------CCCEEECCCC-CHHHHHHHHH
Confidence 6767666677777655333 4455666 9987666543 5666555554
No 96
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=91.65 E-value=2.8 Score=34.24 Aligned_cols=107 Identities=23% Similarity=0.370 Sum_probs=73.5
Q ss_pred CCCeEEEeCCC-----CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-----HHHH
Q 022128 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-----SVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-----~~f~ 118 (302)
..+||++.... ..+.-+...|++.|++|++.++.++. .+.+.+++ -++.|.|+..|-.+- ....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp----~e~v~aA~--~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTP----EEAVRAAV--EEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCH----HHHHHHHH--hcCCCEEEEEeccchHHHHHHHHH
Confidence 46778887753 23566888999999999999998864 23344444 256889998887764 3345
Q ss_pred HHHHHcCCCCceEEEEChh---hHHHHHHHhhccCCCCceeccCCCccHHHH
Q 022128 119 EAWKEAGTPNVRIGVVGAG---TASIFEEVIQSSKCSLDVAFSPSKATGKIL 167 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~---Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L 167 (302)
+.+.+.|..++.+++=|.. ..+.|+++ |+.-.|.|...-.+.+
T Consensus 85 e~lre~G~~~i~v~~GGvip~~d~~~l~~~------G~~~if~pgt~~~~~~ 130 (143)
T COG2185 85 EALREAGVEDILVVVGGVIPPGDYQELKEM------GVDRIFGPGTPIEEAL 130 (143)
T ss_pred HHHHHhCCcceEEeecCccCchhHHHHHHh------CcceeeCCCCCHHHHH
Confidence 5667777777776554444 44558888 9988888865434433
No 97
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.34 E-value=6.1 Score=34.67 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=90.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+...++++|+++...+.. .+.+...+.++. -.+.|+||+.... .....++.+.+ .+++++.++....
T Consensus 21 g~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~iPvV~~~~~~~ 92 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDAN-----GDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ---AGIPVVITNSNIS 92 (275)
T ss_pred HHHHHHHhcCCEEEEEcCC-----cCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH---CCCcEEEeCCCCC
Confidence 3455667789888765421 122222222221 2468999887643 22334444444 4678888875431
Q ss_pred HHHHHHhhccCCCCce--ec-cCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEe
Q 022128 140 SIFEEVIQSSKCSLDV--AF-SPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~--~~-~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (302)
.. +... .+ .++. ..+..+++.|.+.....++|+++.|.... .-+.+.++++|..+....
T Consensus 93 ----~~------~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~ 162 (275)
T cd06317 93 ----EK------GFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLD 162 (275)
T ss_pred ----CC------ccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEe
Confidence 01 1110 01 1121 22344445554432223589888663321 335567778775554433
Q ss_pred eeeeecCCCCcHH----HHHHc-CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 209 TYTTEPVHHVDQT----VLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 209 vY~~~~~~~~~~~----~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
.+..........+ ++... .++++|+..+-..+. .+++.+.+... .++.++.++-.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~~dv~v~g~d~~ 223 (275)
T cd06317 163 TQPADWDREKAQVAMEALITKFGDDIDGVYAGDDNMAR-GALNAAKEAGLAGGIVIVGANNF 223 (275)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCccEEEECCCcHHH-HHHHHHHhcCCcCCcEEEEeCCC
Confidence 3321111111111 12211 247888888877777 77777766533 35677776544
No 98
>PRK09492 treR trehalose repressor; Provisional
Probab=91.10 E-value=11 Score=33.95 Aligned_cols=174 Identities=10% Similarity=0.062 Sum_probs=92.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++.+.. . .+.+...+.++. -.++|+||+.+..... .+.+... ..++++++...
T Consensus 82 ~~i~~~~~~~gy~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~l~~~---~~pvv~i~~~~-- 149 (315)
T PRK09492 82 RTMLPAFYEQGYDPIIMES---Q--FSPEKVNEHLGVLKRRNVDGVILFGFTGIT--EEMLAPW---QDKLVLLARDA-- 149 (315)
T ss_pred HHHHHHHHHcCCeEEEEec---C--CChHHHHHHHHHHHhcCCCEEEEeCCCccc--HHHHHhc---CCCEEEEeccC--
Confidence 3456677888988765432 1 122222222222 2568999987633211 1223332 34688887531
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCc-c-------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. ++..........+..+++.|.+.. .++|.++.+.. . ..-+.+.|++.|..+.. +..
T Consensus 150 ----~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~~ 214 (315)
T PRK09492 150 ----K------GFSSVCYDDEGAIKLLMQRLYDQG--HRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVA---ALG 214 (315)
T ss_pred ----C------CCcEEEECcHHHHHHHHHHHHHcC--CCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCcee---ecC
Confidence 1 332222222233455666676543 36899986432 1 13456778888876532 111
Q ss_pred ecCCCCcHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
........+..+. + .++++|+..|-..+. .+++.+.+....++.++.++..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~ai~~~~D~~A~-g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 215 GLSMQSGYELVAKVLTPETTALVCATDTLAL-GASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred CCCchHHHHHHHHHhhcCCCEEEEcCcHHHH-HHHHHHHHcCCCceEEEeeCch
Confidence 1111111112222 2 468999999988887 7777777654445777777764
No 99
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=90.82 E-value=9.3 Score=33.36 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.+++.|++++..+.- .+.+...+.++ .-...|+||+++...- .+.+.+ .++++++++....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~~dgiii~~~~~~---~~~~~~---~gipvv~~~~~~~- 86 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSD-----NDPEKEREYLEMLRQNQVDGIIAGTHNLG---IEEYEN---IDLPIVSFDRYLS- 86 (265)
T ss_pred HHHHHHHHHCCCeEEEecCC-----ccHHHHHHHHHHHHHcCCCEEEEecCCcC---HHHHhc---CCCCEEEEeCCCC-
Confidence 34556778889888754332 11111112222 1256899999876422 122322 3678999986532
Q ss_pred HHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcc-h-------hhHHHHHHhCCCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
. ++.. +..+ ...+..+++.|.+. ..++|+++.+... . .-+.+.|++.|..+..+. +.
T Consensus 87 ----~------~~~~-V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~-~~ 152 (265)
T cd06291 87 ----E------NIPI-VSSDNYEGGRLAAEELIER--GCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIE-IQ 152 (265)
T ss_pred ----C------CCCe-EeechHHHHHHHHHHHHHc--CCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhe-ee
Confidence 1 2221 1222 22345555666654 2468988876554 1 346677888887653321 11
Q ss_pred eecCCCC-cHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 212 TEPVHHV-DQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~-~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.. .... ..+.... + ..+++|+.++-..+. .+++.+.+... .++.+++++..
T Consensus 153 ~~-~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~al~~~g~~vp~di~v~g~d~~ 211 (265)
T cd06291 153 EN-FDDAEKKEEIKELLEEYPDIDGIFASNDLTAI-LVLKEAQQRGIRVPEDLQIIGYDGT 211 (265)
T ss_pred cc-ccchHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCcceEEeccCCh
Confidence 11 1111 1122222 2 246888877777777 67777766432 24566666543
No 100
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=90.73 E-value=4.5 Score=32.71 Aligned_cols=110 Identities=19% Similarity=0.257 Sum_probs=68.7
Q ss_pred CeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHHH
Q 022128 51 PKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEA 120 (302)
Q Consensus 51 ~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-----v~~f~~~ 120 (302)
++|++-....+ ..-+...|+.+|++|+.+..-... +++-+.. .-.+.|.|..+|-++ +..+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~-----e~~v~aa-~~~~adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ-----EEFIKAA-IETKADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEecccccCHHHHHHHHHH
Confidence 45666554432 344677899999999998765432 2333333 224678887776443 4556667
Q ss_pred HHHcCCCCceEEEEChh------h---HHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 121 WKEAGTPNVRIGVVGAG------T---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 121 l~~~~~~~~~i~aVG~~------T---a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
+++.++.+.++++=|.- . .+.|++. |+...|.|.. ..+.+++.|..
T Consensus 76 l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~------Gv~~vF~pgt-~~~~iv~~l~~ 130 (134)
T TIGR01501 76 CDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEM------GFDRVFAPGT-PPEVVIADLKK 130 (134)
T ss_pred HHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHH
Confidence 77778777665444421 1 2358888 9988887655 56777776654
No 101
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.71 E-value=5.4 Score=36.64 Aligned_cols=209 Identities=16% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE--eee-CCCc-hHHHHHHhcCCCccEEEEeChH--------HH---
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQ-GPDT-DRLSSVLNADTIFDWIIITSPE--------AG--- 114 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~--~~~-~~~~-~~l~~~l~~l~~~d~IifTS~~--------av--- 114 (302)
|+++.+.-...+.-.+++.|.+.|++|...-.-+ ... .... ....+ .+.+.|.|++.-|- +.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHH---HhccCCEEEECCccccCCceeeccccc
Confidence 6788999888888889999999999998732211 100 0000 01122 24678999988442 11
Q ss_pred ------HHHHHHHHHcCCCCceEEEEChh---hHHHHHHHhhccCCCCceec-cC--------CCccHHHHH-HhcccCC
Q 022128 115 ------SVFLEAWKEAGTPNVRIGVVGAG---TASIFEEVIQSSKCSLDVAF-SP--------SKATGKILA-SELPKNG 175 (302)
Q Consensus 115 ------~~f~~~l~~~~~~~~~i~aVG~~---Ta~~l~~~~~~~~~G~~~~~-~p--------~~~~~e~L~-~~L~~~~ 175 (302)
..+++.+ +...++.+|-. ..+.+++. |+.+.- .| ...++++-+ ..+....
T Consensus 79 ~~~~~~~~~l~~l-----~~~~~v~~G~~~~~~~~~~~~~------gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~ 147 (296)
T PRK08306 79 EKLVLTEELLELT-----PEHCTIFSGIANPYLKELAKET------NRKLVELFERDDVAILNSIPTAEGAIMMAIEHTP 147 (296)
T ss_pred cCCcchHHHHHhc-----CCCCEEEEecCCHHHHHHHHHC------CCeEEEEeccchhhhhccHhHHHHHHHHHHHhCC
Confidence 1222222 22232334543 44455555 887742 22 123445522 3332221
Q ss_pred --CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC-----------CcHHHHHHcCCCCEEEEECcHHHH-
Q 022128 176 --KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAVR- 241 (302)
Q Consensus 176 --~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~ivftS~s~v~- 241 (302)
..+++++++........+...|+..|++| .+|.+.+... ....+.+.+.+.|+|+-|.|..+-
T Consensus 148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V---~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTLARTLKALGANV---TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 25789999977677777889999999765 4454443210 011122234688999998875422
Q ss_pred HHHHHhhhcccCCCceEE--E--ECHHHHHHHHHcCCCeEEe
Q 022128 242 SSWVNLISDTEQWSNSVA--C--IGETTASAAKRLGLKNVYY 279 (302)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~--~--IG~~Ta~~l~~~G~~~~~v 279 (302)
...++.+++ +..++ + -|.+--+.+++.|++.+..
T Consensus 225 ~~~l~~~~~----g~vIIDla~~pggtd~~~a~~~Gv~~~~~ 262 (296)
T PRK08306 225 KEVLSKMPP----EALIIDLASKPGGTDFEYAEKRGIKALLA 262 (296)
T ss_pred HHHHHcCCC----CcEEEEEccCCCCcCeeehhhCCeEEEEE
Confidence 022233332 11111 1 1344345678888886543
No 102
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.67 E-value=3.3 Score=32.60 Aligned_cols=95 Identities=13% Similarity=0.108 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
-....|+..|++++.+... +|. +++.+...+ .+.|.|++++.. .++.+.+.+++.+.+++++++-|...
T Consensus 18 ~~~~~l~~~G~~vi~lG~~--vp~---e~~~~~a~~-~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 18 VIARALRDAGFEVIYTGLR--QTP---EEIVEAAIQ-EDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3556789999999988765 222 233334422 467888887643 34556667777766788888887666
Q ss_pred HHH---HHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 139 ASI---FEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 139 a~~---l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
.+. +++. |++..+. .+.+.+..+..|
T Consensus 92 ~~~~~~~~~~------G~d~~~~-~~~~~~~~~~~~ 120 (122)
T cd02071 92 PEDYELLKEM------GVAEIFG-PGTSIEEIIDKI 120 (122)
T ss_pred HHHHHHHHHC------CCCEEEC-CCCCHHHHHHHH
Confidence 554 4455 9887554 455566666554
No 103
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=90.47 E-value=3.7 Score=36.09 Aligned_cols=197 Identities=8% Similarity=0.023 Sum_probs=105.6
Q ss_pred HHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~-f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++| ++++..+.-+ ...+.+...+ ....|++|+.|...-.. ....+.+ .+++++.+|.....
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~--~~~vdGvIi~~~~~~~~~~~~~~~~---~~~PvV~i~~~~~~ 88 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT--KGKYSGYVVMPHFKNEIQYFLLKKI---PKEKLLILDHSIPE 88 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH--hcCCCEEEEecCCCCcHHHHHHhcc---CCCCEEEEcCcCCC
Confidence 44667778889 7777654332 1111222222 26799999987642221 2222221 36789999975310
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhccc--CCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPK--NGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~--~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++..........+..+++.|.+ .. -++|.++.+... ..-+.+.|++.|+.+... .
T Consensus 89 ---~~------~~~~V~~D~~~~~~~a~~~L~~~~~G--~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~-~--- 153 (247)
T cd06276 89 ---GG------EYSSVAQDFEKAIYNALQEGLEKLKK--YKKLILVFPNKTAIPKEIKRGFERFCKDYNIETEII-N--- 153 (247)
T ss_pred ---CC------CCCeEEEccHHHHHHHHHHHHHHhcC--CCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcccc-c---
Confidence 11 3322222223345556666666 43 478999977542 234566788888765321 1
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHH
Q 022128 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWV 289 (302)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll 289 (302)
... . ..+.+.++|+++|-..+. .+++.+.+.+. .++.+++++..-....-.-++..+. .+.+.|.
T Consensus 154 ---~~~-~---~~~~~~~ai~~~~d~~A~-g~~~~l~~~g~~iP~disvigfd~~~~~~~~~p~lttv~----~~~~~~g 221 (247)
T cd06276 154 ---DYE-N---REIEKGDLYIILSDTDLV-FLIKKARESGLLLGKDIGIISYNDTPLKEILRNGITTIS----TDFENMG 221 (247)
T ss_pred ---ccc-h---hhccCCcEEEEeCHHHHH-HHHHHHHHcCCcCCceeEEEEecCchhhhccCCCceEEe----cCHHHHH
Confidence 000 0 012345899999988888 78787776542 3567888876533333333333332 2344554
Q ss_pred HHHHHH
Q 022128 290 DSILEA 295 (302)
Q Consensus 290 ~~i~~~ 295 (302)
+...+.
T Consensus 222 ~~a~~~ 227 (247)
T cd06276 222 KKAAEM 227 (247)
T ss_pred HHHHHH
Confidence 444443
No 104
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.35 E-value=12 Score=32.97 Aligned_cols=184 Identities=10% Similarity=0.055 Sum_probs=92.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|++++.... ..+.+...+.++. -.+.|+||+++.. ++...++.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~-----~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (282)
T cd06318 19 EAAKAHAKALGYELISTDA-----QGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA---AGVPVVVVDSSI 90 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH---CCCCEEEecCCC
Confidence 3455677889998865322 1122211222222 2578999997642 33333444443 467899998642
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhccc-CCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeE---E
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPK-NGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVV---R 206 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~-~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~---~ 206 (302)
.... . .+.. +..+. ..++.+++.|.+ ...++++|+++.|... ..-+.+.|++.|.... .
T Consensus 91 ~~~~--~------~~~~-v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 161 (282)
T cd06318 91 NLEA--G------VVTQ-VQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTN 161 (282)
T ss_pred CCCc--C------eEEE-EecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCC
Confidence 1000 0 1111 22222 234556666655 3323458998876433 2345667777764211 1
Q ss_pred EeeeeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 207 LNTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 207 ~~vY~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
+.++.......... +.... + .++|+|+..+-..+. .+++.+.+... .++.+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~dv~vvg~d~~ 226 (282)
T cd06318 162 FTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVYSENDDMAL-GAMRVLAEAGKTDDVKVAAADGQ 226 (282)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEEECCcchHH-HHHHHHHHcCCCCCeEEEecCCC
Confidence 11111111111111 11112 2 357899999877777 67777766532 35677777554
No 105
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.33 E-value=4.4 Score=31.85 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=57.3
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHH-----HHHHHHHhhhcccCCCceEEEEC
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~-----v~~~~~~~l~~~~~~~~~i~~IG 262 (302)
...+...|+..|++|..+-.. . +.+++.+.. .++|+|++.+... ++ .+.+.+++....+.++++-|
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~--v----p~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~-~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLR--Q----TPEEIVEAAIQEDVDVIGLSSLSGGHMTLFP-EVIELLRELGAGDILVVGGG 88 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCC--C----CHHHHHHHHHHcCCCEEEEcccchhhHHHHH-HHHHHHHhcCCCCCEEEEEC
Confidence 456677889999887655543 1 122233322 4788888776432 34 44555554323345666554
Q ss_pred H---HHHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 263 E---TTASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 263 ~---~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
. .-.+.+.++|+..+ +..+.+.+.++..|.
T Consensus 89 ~~~~~~~~~~~~~G~d~~-~~~~~~~~~~~~~~~ 121 (122)
T cd02071 89 IIPPEDYELLKEMGVAEI-FGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCHHHHHHHHHCCCCEE-ECCCCCHHHHHHHHh
Confidence 2 23445778999875 466678888887764
No 106
>PRK09526 lacI lac repressor; Reviewed
Probab=90.17 E-value=6.2 Score=36.19 Aligned_cols=178 Identities=10% Similarity=0.015 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++....-. .+.+...+.++. -.++|+||+.++..-.... .+... ..+++++.++...
T Consensus 84 gi~~~a~~~g~~~~i~~~~~----~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~-~~~~~-~~~iPvV~~d~~~--- 154 (342)
T PRK09526 84 AIKSRADQLGYSVVISMVER----SGVEACQAAVNELLAQRVSGVIINVPLEDADAE-KIVAD-CADVPCLFLDVSP--- 154 (342)
T ss_pred HHHHHHHHCCCEEEEEeCCC----ChHHHHHHHHHHHHhcCCCEEEEecCCCcchHH-HHHhh-cCCCCEEEEeccC---
Confidence 34466778899987653211 111111222222 2579999996432222121 12111 1367888887521
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. .+.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+.. ++...
T Consensus 155 --~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~~ 221 (342)
T PRK09526 155 --QS------PVNS-VSFDPEDGTRLGVEHLVELG--HQRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIA--VREGD 221 (342)
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcce--EEeCC
Confidence 11 2221 22232 23455566666543 4689999875432 2456778888875322 22111
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+.... + ..+++|+.++-..+. .+++.+.+... .++.++.++..
T Consensus 222 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~disvig~d~~ 278 (342)
T PRK09526 222 WSAMSGYQQTLQMLREGPVPSAILVANDQMAL-GVLRALHESGLRVPGQISVIGYDDT 278 (342)
T ss_pred CchHHHHHHHHHHhcCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEeeCCC
Confidence 111111111222 2 257899998888887 77777776532 34667777654
No 107
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=90.05 E-value=11 Score=37.54 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 128 ~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
+..++.-..+|++.+++++ .+++.-+ ..++-++.+.|......+.++.++.-...-+.
T Consensus 54 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~--------------- 111 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKSRL-----SLPVIVI--KPTGFDVMQALARARRIASSIGVVTHQDTPPA--------------- 111 (526)
T ss_pred CCcEEEECchHHHHHHHhC-----CCCEEEe--cCChhhHHHHHHHHHhcCCcEEEEecCcccHH---------------
Confidence 4456655666889998875 5655433 34555566666433223345555443222111
Q ss_pred eeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChH
Q 022128 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 286 (302)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~ 286 (302)
...+.+.+ .+++.+.+.|...++ ..+..+++. +..+++=|-.|...++++|++.+.+-. .+
T Consensus 112 -----------~~~~~~ll~~~i~~~~~~~~~e~~-~~~~~l~~~---G~~~viG~~~~~~~A~~~gl~~ili~s---~e 173 (526)
T TIGR02329 112 -----------LRRFQAAFNLDIVQRSYVTEEDAR-SCVNDLRAR---GIGAVVGAGLITDLAEQAGLHGVFLYS---AD 173 (526)
T ss_pred -----------HHHHHHHhCCceEEEEecCHHHHH-HHHHHHHHC---CCCEEECChHHHHHHHHcCCceEEEec---HH
Confidence 11122222 367788899999999 777666653 466766666888889999999877633 38
Q ss_pred HHHHHHHHHHH
Q 022128 287 GWVDSILEALR 297 (302)
Q Consensus 287 ~ll~~i~~~~~ 297 (302)
++.+++.+++.
T Consensus 174 si~~a~~~A~~ 184 (526)
T TIGR02329 174 SVRQAFDDALD 184 (526)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 108
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.89 E-value=19 Score=34.61 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=84.7
Q ss_pred cCCCccEEEEeChHHHHHH-HH-HHHHcCCCCceEEEE--Chhh--HHHH---HHHhhccCCCCceeccCCCccHHHHHH
Q 022128 99 ADTIFDWIIITSPEAGSVF-LE-AWKEAGTPNVRIGVV--GAGT--ASIF---EEVIQSSKCSLDVAFSPSKATGKILAS 169 (302)
Q Consensus 99 ~l~~~d~IifTS~~av~~f-~~-~l~~~~~~~~~i~aV--G~~T--a~~l---~~~~~~~~~G~~~~~~p~~~~~e~L~~ 169 (302)
.+.++|.+|+++++-.... .. .++.. .+..++++. .... ...+ ++. |....+.|....+..++.
T Consensus 62 ~~~~a~~vi~~~~~~~~n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~~~l~~~~~~------G~~~vi~p~~~~a~~l~~ 134 (453)
T PRK09496 62 GAEDADLLIAVTDSDETNMVACQIAKSL-FGAPTTIARVRNPEYAEYDKLFSKEAL------GIDLLISPELLVAREIAR 134 (453)
T ss_pred CCCcCCEEEEecCChHHHHHHHHHHHHh-cCCCeEEEEECCccccchhhhhhhhcC------CccEEECHHHHHHHHHHH
Confidence 3578999999877643332 22 22222 134455554 2222 1223 455 887766677666777766
Q ss_pred hcccCCC------CCCE--EE--EeCCC--cchhhHHHHH---HhCCCeeEEEeeeeeec--CCCCcHHHHHHcCCCC-E
Q 022128 170 ELPKNGK------KKCT--VL--YPASA--KASNEIEEGL---SNRGFEVVRLNTYTTEP--VHHVDQTVLKQALSIP-V 231 (302)
Q Consensus 170 ~L~~~~~------~~~~--vL--~~rg~--~~~~~L~~~L---~~~G~~v~~~~vY~~~~--~~~~~~~~~~~~~~~d-~ 231 (302)
.+..... .+.. +. .+..+ -....+.+.- ...|+.+. .+++... .+.. .. .+..-| .
T Consensus 135 ~l~~~~~~~~~~~~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi--~i~r~~~~~~p~~-~~---~l~~gD~l 208 (453)
T PRK09496 135 LIEYPGALDVEEFADGRVQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVV--AIFRGGRLIIPRG-DT---VIEAGDEV 208 (453)
T ss_pred HhcCCCceEeeeecCCeEEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEE--EEEECCEEEcCCC-Cc---EecCCCEE
Confidence 5542210 1111 11 11111 1112222222 23455554 3444221 1111 11 133345 4
Q ss_pred EEEECcHHHHHHHHHhhhcccCCCceEEEEC-----HHHHHHHHHcCCCeEEecC
Q 022128 232 VAVASPSAVRSSWVNLISDTEQWSNSVACIG-----ETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 232 ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG-----~~Ta~~l~~~G~~~~~v~~ 281 (302)
++...+..++ .+...+.+......+++.+| ...++.|.+.|.+.+++-.
T Consensus 209 ~v~g~~~~l~-~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~ 262 (453)
T PRK09496 209 YFIGAREHIR-AVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIER 262 (453)
T ss_pred EEEeCHHHHH-HHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence 5667788888 88877765432235566655 7888889888988765543
No 109
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=89.80 E-value=20 Score=34.62 Aligned_cols=223 Identities=15% Similarity=0.104 Sum_probs=114.1
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEe------------eeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCC
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQH------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~------------~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~ 127 (302)
+..++.+.|++.|+++..+|.+.- .+.. ...+++ +.++.+...-+..++..-..+.+.|++ .+.+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~g-g~~~e~-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 247 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKG-GTTLEE-IRDAGNAKATIALGEYSGRKAAKALEEKFGVP 247 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCC-CCcHHH-HHHhccCcEEEEEChhhhHHHHHHHHHHHCCC
Confidence 478999999999999999886511 1111 122333 335677777888888444455666654 4444
Q ss_pred CceEE-EEC-hhhHHHHHHHhhccCCCCceeccCCCccH--HHHHHhcccC--CCCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 128 NVRIG-VVG-AGTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 128 ~~~i~-aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~--e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
-+..- -+| ..|.+.|++.... -|.+. |+.... +.+.+.+.+. ...|+++.+..+..-.--+...|.+.|
T Consensus 248 ~~~~~~p~G~~~t~~~l~~l~~~--~g~~~---~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G 322 (428)
T cd01965 248 YILFPTPIGLKATDEFLRALSKL--SGKPI---PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMG 322 (428)
T ss_pred eeecCCCcChHHHHHHHHHHHHH--HCCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcC
Confidence 33222 455 3455555544110 04322 221111 1122222211 125789988866555566899999999
Q ss_pred CeeEEEeeeeeecCCCCcHHH--HHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEe
Q 022128 202 FEVVRLNTYTTEPVHHVDQTV--LKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY 279 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~--~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v 279 (302)
.+|..+.+.... +...+.. .......+..++..+...+ +.+.+.+. +..++.-+......++++|+..+.+
T Consensus 323 ~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~~e--l~~~i~~~---~pdliig~~~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 323 AEPVAAVTGTDN--PPFEKRMELLASLEGIPAEVVFVGDLWD--LESLAKEE---PVDLLIGNSHGRYLARDLGIPLVRV 395 (428)
T ss_pred CcceEEEEcCCC--chhHHHHHHhhhhcCCCceEEECCCHHH--HHHHhhcc---CCCEEEECchhHHHHHhcCCCEEEe
Confidence 998665553222 2111111 1112233333444443333 33444332 2345545555666667778765422
Q ss_pred c------------CCCChHHHHHHHHHHHH
Q 022128 280 P------------THPGLEGWVDSILEALR 297 (302)
Q Consensus 280 ~------------~~~~~~~ll~~i~~~~~ 297 (302)
. .....++.+..+.+..+
T Consensus 396 ~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 425 (428)
T cd01965 396 GFPIFDRLGLHRRPYVGYRGALNLLEEIAN 425 (428)
T ss_pred cCCchhccccccCCceecHHHHHHHHHHHH
Confidence 1 11344666666665544
No 110
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=89.57 E-value=6.9 Score=34.39 Aligned_cols=180 Identities=10% Similarity=0.055 Sum_probs=92.0
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.+++. |++++..... .+.+...+.++. -.+.|.||+.+.. .....+..+.+ .+++++.+|...
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 91 (270)
T cd06308 20 EIQREASNYPDVELIIADAA-----DDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYR---AGIPVILLDRKI 91 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCC-----CCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHH---CCCCEEEeCCCC
Confidence 344556665 8888754321 122211222222 2468999987643 22333344433 478899998643
Q ss_pred HHHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEEee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNT 209 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~v 209 (302)
.. . +....+..+.+ .+..+++.|.+.....++|+++.|.... .-+.+.|++. |.++.. .
T Consensus 92 ~~----~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~--~ 159 (270)
T cd06308 92 LS----D------KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVA--Q 159 (270)
T ss_pred CC----c------cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEE--e
Confidence 11 1 11111222322 3344445555532235789999764432 2345567777 665432 2
Q ss_pred eeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
+.............+. + .++++|+.++-..+. .+++.+.+... .++.+++++..
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~-g~~~al~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 160 QDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMAL-GAYLAAKRAGREKEIKFIGIDGL 218 (270)
T ss_pred cCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHH-HHHHHHHHcCCCCCcEEEEecCC
Confidence 2111111111111222 2 358999999988888 78788776542 45788888643
No 111
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.56 E-value=7.4 Score=34.18 Aligned_cols=181 Identities=12% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+...+++.|++++.+..-.- +....+.+...+ -.++|+||+.+.. .....++.+.+ .++++++++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~~-- 91 (277)
T cd06319 20 GVKSKAKALGYDAVELSAENS-AKKELENLRTAI--DKGVSGIIISPTNSSAAVTLLKLAAQ---AKIPVVIADIGAE-- 91 (277)
T ss_pred HHHHHHHhcCCeEEEecCCCC-HHHHHHHHHHHH--hcCCCEEEEcCCchhhhHHHHHHHHH---CCCCEEEEecCCC--
Confidence 344566778988875433110 000011122222 2579999887633 23333444443 4678888875421
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccC----CCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN----GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~----~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~v 209 (302)
.. .....+.++.+ .+..+++.|.+. ....++|.++.+... ..-+.+.|++.|..+..+
T Consensus 92 --~~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~-- 161 (277)
T cd06319 92 --GG------DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGI-- 161 (277)
T ss_pred --CC------ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEee--
Confidence 01 11111222222 233333433332 112367888875432 234567888888765422
Q ss_pred eeeecCC-CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECH
Q 022128 210 YTTEPVH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGE 263 (302)
Q Consensus 210 Y~~~~~~-~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~ 263 (302)
+...... ....+.... + ..+++|+..+...+. ..++.+.+... .++.+++++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~di~vvg~d~ 220 (277)
T cd06319 162 RQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQ-GALDAIATAGKTGKVLLICFDA 220 (277)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccch-HHHHHHHHcCCCCCEEEEEcCC
Confidence 2111111 111111111 2 346787777776666 66677766432 2466777765
No 112
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.52 E-value=11 Score=33.64 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|+++....... +.+...+.++. -.+.|+||+++.. .+...++.+.+ .++++++++...
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~---~~ipvV~~~~~~ 90 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANG-----DPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAAD---AGIPVIAYDRLI 90 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHH---CCCCEEEECCCC
Confidence 345567788999988765421 21212222222 2579999998643 33444444444 467899988653
Q ss_pred HHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccC----CCCCCEEEEeCCCcch-------hhHHHHHHhCC----C
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN----GKKKCTVLYPASAKAS-------NEIEEGLSNRG----F 202 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~----~~~~~~vL~~rg~~~~-------~~L~~~L~~~G----~ 202 (302)
.. . .....+..+ ...+..+++.|.+. ....++++++.|.... .-+.+.|++.| +
T Consensus 91 ~~----~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~~~ 160 (288)
T cd01538 91 LN----S------NVDYYVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSGKI 160 (288)
T ss_pred CC----C------CcceEEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHHHHHHHHHhccccCCe
Confidence 11 0 111111112 12334444444443 1234688888765432 23356677766 3
Q ss_pred eeEEEeeeeeecCCCCc---HHHHHH-c---C-CCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 203 EVVRLNTYTTEPVHHVD---QTVLKQ-A---L-SIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 203 ~v~~~~vY~~~~~~~~~---~~~~~~-~---~-~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
.+.. ..|. ..... .+.... + . ++++|+..+...+. ..+..+.+... .++.+++.+...
T Consensus 161 ~~~~-~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~I~~~~d~~a~-g~~~al~~~g~~~dv~vvg~d~~~ 227 (288)
T cd01538 161 TIVG-EVAT---PDWDPETAQKRMENALTANYNKVDGVLAANDGTAG-GAIAALKAAGLAGKPPVTGQDAEL 227 (288)
T ss_pred eEEe-cccc---CCCCHHHHHHHHHHHHHhCCCCccEEEeCCcHHHH-HHHHHHHHcCCCCCceEEecCCCH
Confidence 3211 1111 11111 111212 2 3 57888888888888 78888876532 256777777743
No 113
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.10 E-value=7.9 Score=29.07 Aligned_cols=94 Identities=13% Similarity=0.106 Sum_probs=54.8
Q ss_pred EEEEeCC-CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceE
Q 022128 180 TVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSV 258 (302)
Q Consensus 180 ~vL~~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i 258 (302)
+||++.| +.....+.+.+++.|+..... .+..........+-..+.+.|+|++...-.=. ...
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH-~~~------------- 64 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFTDYVSH-NAM------------- 64 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEeCCcCh-HHH-------------
Confidence 4788998 455578899999999886554 22221111111233335778987766533222 121
Q ss_pred EEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHH
Q 022128 259 ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILE 294 (302)
Q Consensus 259 ~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~ 294 (302)
..+.+.+++.|... +.+...+..+|.++|.+
T Consensus 65 ----~~vk~~akk~~ip~-~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 65 ----WKVKKAAKKYGIPI-IYSRSRGVSSLERALER 95 (97)
T ss_pred ----HHHHHHHHHcCCcE-EEECCCCHHHHHHHHHh
Confidence 23345667777764 34566777777777765
No 114
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=89.02 E-value=18 Score=33.02 Aligned_cols=178 Identities=9% Similarity=0.040 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++..+.- .+.+...+.++. -.+.|+||+.+...-...++.+.+ .+++++.++....
T Consensus 84 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 153 (331)
T PRK14987 84 GIESVTDAHGYQTMLAHYG-----YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEV---AGIPVVELMDSQS-- 153 (331)
T ss_pred HHHHHHHHCCCEEEEecCC-----CCHHHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHh---CCCCEEEEecCCC--
Confidence 3555667789888765431 111111122221 257999999753322223333433 3577887753211
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. +....+..+. ..+..+++.|.+.. .++|.++.+... ..-+.+.|.+.|.....+ ++....
T Consensus 154 ---~------~~~~~V~~Dn~~~~~~a~~~L~~~G--h~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~ 221 (331)
T PRK14987 154 ---P------CLDIAVGFDNFEAARQMTTAIIARG--HRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSV-MVEQSS 221 (331)
T ss_pred ---C------CCCceEEeCcHHHHHHHHHHHHHCC--CceEEEEcCCCcccHHHHHHHHHHHHHHcCCCccce-eecCCC
Confidence 1 1111122232 23444556666543 368998866432 134567788888632222 222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
......+..+. + ..+++|+.++-..+- .++..+.+.+. .++.++.++..
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~-g~~~al~~~g~~vP~disvigfD~~ 277 (331)
T PRK14987 222 SYSSGIELIRQARREYPQLDGVFCTNDDLAV-GAAFECQRLGLKVPDDMAIAGFHGH 277 (331)
T ss_pred ChhhHHHHHHHHHhcCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCccEEEeeCCc
Confidence 11111122222 2 357999999988887 77777766432 35778888764
No 115
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=89.02 E-value=23 Score=34.23 Aligned_cols=224 Identities=13% Similarity=0.099 Sum_probs=114.9
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceE-EEECh-
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRI-GVVGA- 136 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i-~aVG~- 136 (302)
.+-.++.+.|++.|+++..++.-. ...+++ .+..+...-+..++.....+.+.+++ .+.+-+.+ +-+|.
T Consensus 179 ~d~~ei~~lL~~~Gi~v~~~~~~~----~~~~ei----~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~ 250 (426)
T cd01972 179 EDVDEFKRLLNELGLRVNAIIAGG----CSVEEL----ERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIE 250 (426)
T ss_pred ccHHHHHHHHHHcCCeEEEEeCCC----CCHHHH----HhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHH
Confidence 445889999999999998653321 223333 35677777777777655566666654 45443333 23564
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCc--cHHHHHHhcccC--CCCCCEEEEeCCCcchhhHHHHHHhCC-CeeEEEeeee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG-FEVVRLNTYT 211 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G-~~v~~~~vY~ 211 (302)
.|.+.|++... .-|.... ++... --+.+.+.|.+. ...|+++++..+..-.-.+...|.+.| .+|..+.+..
T Consensus 251 ~T~~~l~~ia~--~~g~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~~ 327 (426)
T cd01972 251 ATDKWLREIAK--VLGMEAE-AEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVFH 327 (426)
T ss_pred HHHHHHHHHHH--HhCCcHH-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEecc
Confidence 45556555411 0043211 11100 001122222221 116889988888877888899999999 8876655532
Q ss_pred eecCCCCcHHHH-HHcC-CC--CEE---EEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCC--
Q 022128 212 TEPVHHVDQTVL-KQAL-SI--PVV---AVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH-- 282 (302)
Q Consensus 212 ~~~~~~~~~~~~-~~~~-~~--d~i---vftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~-- 282 (302)
..+... ..... +.+. .. +.. +..+..... .+.+.+++... +..+..-|........+.|+..+.+...
T Consensus 328 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~l~~~~p-Dl~i~~~~~~~~~~~~~~gip~~~~~~~~~ 404 (426)
T cd01972 328 HDPTYD-RGDSEKDLLEHGVDPEIDITKYTVSNGQYY-QFYNLLKRVKP-DFIIFRHGGLFPDATVYLGIPVVPLNDELN 404 (426)
T ss_pred Cchhhh-cchhHHHHhcCCcccccccceeeecCCCHH-HHHHHHHHhCC-CEEEEcCCCccHHHHHhcCCCEEecccccc
Confidence 222221 11111 1122 22 211 223332323 34444544321 2222223455555556689986544332
Q ss_pred ---CChHHHHHHHHHHHH
Q 022128 283 ---PGLEGWVDSILEALR 297 (302)
Q Consensus 283 ---~~~~~ll~~i~~~~~ 297 (302)
...+++++.+++..+
T Consensus 405 ~~~~Gy~G~~~l~~~i~~ 422 (426)
T cd01972 405 QPQFGYRGLLKIANKIVD 422 (426)
T ss_pred CCcccHhHHHHHHHHHHH
Confidence 356777777666554
No 116
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=88.81 E-value=7.2 Score=34.09 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=95.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE-----EEeChHHHHHHHHHHHHcCC---CCceEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI-----IITSPEAGSVFLEAWKEAGT---PNVRIGV 133 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~I-----ifTS~~av~~f~~~l~~~~~---~~~~i~a 133 (302)
.+-...|++.|++=+.+..+.+.|...++.+...++.. .+|+-| +..|.+-.+.+.+++++.-. .+-.++-
T Consensus 63 ~~aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vl 142 (265)
T COG4822 63 IQALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVL 142 (265)
T ss_pred HHHHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEE
Confidence 34556788999999999999998876555554444322 233333 45677888889988877533 3556777
Q ss_pred EChhhHHH-----------HHHHhhccCCCCceeccCC---CccHHHHHHhcccCCCCC---CEEEEeCCCcchhhHH--
Q 022128 134 VGAGTASI-----------FEEVIQSSKCSLDVAFSPS---KATGKILASELPKNGKKK---CTVLYPASAKASNEIE-- 194 (302)
Q Consensus 134 VG~~Ta~~-----------l~~~~~~~~~G~~~~~~p~---~~~~e~L~~~L~~~~~~~---~~vL~~rg~~~~~~L~-- 194 (302)
+|.+|... +.++ |+.+.++.. -+..+.+++.|.+...++ -+++++.|+.+..+++
T Consensus 143 mgHGt~h~s~~~YacLd~~~~~~------~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasd 216 (265)
T COG4822 143 MGHGTDHHSNAAYACLDHVLDEY------GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASD 216 (265)
T ss_pred EecCCCccHHHHHHHHHHHHHhc------CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhccc
Confidence 88877532 3344 775555432 245678888888665422 3467889998766655
Q ss_pred ------HHHHhCCCeeEEEeeeeeec
Q 022128 195 ------EGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 195 ------~~L~~~G~~v~~~~vY~~~~ 214 (302)
+.|+..|+.| .+|..-.
T Consensus 217 dedswk~il~~~G~~v---~~~l~GL 239 (265)
T COG4822 217 DEDSWKNILEKNGFKV---EVYLHGL 239 (265)
T ss_pred chHHHHHHHHhCCcee---EEEeecC
Confidence 8899999887 6666544
No 117
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=88.29 E-value=6.2 Score=32.22 Aligned_cols=104 Identities=20% Similarity=0.327 Sum_probs=65.6
Q ss_pred cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHH----hhhcccCCCceEEE-
Q 022128 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVN----LISDTEQWSNSVAC- 260 (302)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~----~l~~~~~~~~~i~~- 260 (302)
.+...+...|+..||+|......++ +++..+++ ...|+|.+.|-+.....++. .+++.....+.+++
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~t------p~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~G 100 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQT------PEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVG 100 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCC------HHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeec
Confidence 3457889999999999976665443 24444443 68999999887765522333 23332222333332
Q ss_pred --ECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 261 --IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 261 --IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
|.+-....++++|+..++-|. -+....++.+...+..
T Consensus 101 Gvip~~d~~~l~~~G~~~if~pg-t~~~~~~~~v~~~l~~ 139 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFGPG-TPIEEALSDLLTRLGA 139 (143)
T ss_pred CccCchhHHHHHHhCcceeeCCC-CCHHHHHHHHHHHHHh
Confidence 455667779999999977654 4666666666665544
No 118
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=88.29 E-value=15 Score=31.17 Aligned_cols=150 Identities=13% Similarity=0.090 Sum_probs=81.9
Q ss_pred CCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~IifTS~~av~~-f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 178 (302)
.++|.|+++....... ..+.+.+ .+++++.++....... .. ..+. .+.+.. ..++.+++.+.+.. .
T Consensus 57 ~~~d~ii~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~-~~-----~~~~-~~~~~~~~~~~~~~~~l~~~~--~ 124 (269)
T cd01391 57 QGVDGIIGPPSSSSALAVVELAAA---AGIPVVSLDATAPDLT-GY-----PYVF-RVGPDNEQAGEAAAEYLAEKG--W 124 (269)
T ss_pred cCCCEEEecCCCHHHHHHHHHHHH---cCCcEEEecCCCCccC-CC-----ceEE-EEcCCcHHHHHHHHHHHHHhC--C
Confidence 4689999877654332 3444443 4678888877653211 11 0221 223332 23455666666553 4
Q ss_pred CEEEEeCCCc-c-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--C-CCCEEEEECcHHHHHHHHHhhh
Q 022128 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 179 ~~vL~~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~-~~d~ivftS~s~v~~~~~~~l~ 249 (302)
+++.++.+.. . ...+.+.+++.|..+.....+.... +...+.+.+.+ . ++++|++.+...+. .+++.+.
T Consensus 125 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~a~-~~~~~~~ 202 (269)
T cd01391 125 KRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDT-EKGFQALLQLLKAAPKPDAIFACNDEMAA-GALKAAR 202 (269)
T ss_pred ceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCc-cccHHHHHHHHhcCCCCCEEEEcCchHHH-HHHHHHH
Confidence 6888887665 2 2456667777775544333322211 11122233333 2 57999999888888 7878777
Q ss_pred cccC--CCceEEEECHH
Q 022128 250 DTEQ--WSNSVACIGET 264 (302)
Q Consensus 250 ~~~~--~~~~i~~IG~~ 264 (302)
+... .+..+++++..
T Consensus 203 ~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 203 EAGLTPGDISIIGFDGS 219 (269)
T ss_pred HcCCCCCCCEEEecccc
Confidence 6543 34566665543
No 119
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=88.14 E-value=20 Score=32.43 Aligned_cols=185 Identities=8% Similarity=0.042 Sum_probs=87.9
Q ss_pred HHHHHHHh--CCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeC--hHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 64 KLIKALAK--HRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 64 ~l~~~L~~--~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS--~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.+.+.+++ .|+++...+.- .+.+...+.++. -.+.|.||+.. +.++...++.+.. .++++++++..
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~-----~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~giPvV~~~~~ 91 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAK-----NNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ---KNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH---CCCCEEEeCCC
Confidence 35556666 67776655431 122211122222 25789999874 3344444444443 36789999865
Q ss_pred hHHH-HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCC----------CCC-EEEEeCCCcch-------hhHHHHH
Q 022128 138 TASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK----------KKC-TVLYPASAKAS-------NEIEEGL 197 (302)
Q Consensus 138 Ta~~-l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~----------~~~-~vL~~rg~~~~-------~~L~~~L 197 (302)
.... .... ..+. .+.+.. ..++.+++.|.+... .++ .++++.|.... .-+.+.|
T Consensus 92 ~~~~~~~~~-----~~~~-~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l 165 (303)
T cd01539 92 PEEEDIKSY-----DKAY-YVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETL 165 (303)
T ss_pred Ccccccccc-----cccc-eeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHH
Confidence 3211 1111 0111 112222 223344444433211 111 35666665432 2356678
Q ss_pred HhCCCeeEEEeeeeeecCCCCcHHHHHH-c----CCCCEEEEECcHHHHHHHHHhhhcccC------CCceEEEECH
Q 022128 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A----LSIPVVAVASPSAVRSSWVNLISDTEQ------WSNSVACIGE 263 (302)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~----~~~d~ivftS~s~v~~~~~~~l~~~~~------~~~~i~~IG~ 263 (302)
++.|..+....+...........+.... + ..+++|+..+...+. ...+.+.+... .++.+++++-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~p~~~~di~iig~d~ 241 (303)
T cd01539 166 NDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVIANNDAMAL-GAIEALQKYGYNKGDKSKNIPVVGVDA 241 (303)
T ss_pred HhcCCCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccEEEECCchHHH-HHHHHHHHcCCCcCCCCCceEEEccCC
Confidence 8888766443332211111111111222 2 237888888877776 66676665431 2466777753
No 120
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=88.11 E-value=0.58 Score=38.44 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeec-----CCC--CcHHHHHHcCCCCEEEEECcHHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-----VHH--VDQTVLKQALSIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~-----~~~--~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~ 249 (302)
++++|.++..-.. +.+.|++.+.+ +.+++..+ ... ...+..+.+...|++++|.+.-+...+-+++.
T Consensus 10 ~~~~V~~VG~f~P---~~~~l~~~~~~---v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~ 83 (147)
T PF04016_consen 10 PGDKVGMVGYFQP---LVEKLKERGAE---VRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDDILE 83 (147)
T ss_dssp TTSEEEEES--HC---CHHHHCCCCSE---EEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHHH
T ss_pred CCCEEEEEcCcHH---HHHHHhcCCCC---EEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHHH
Confidence 5789998875333 67778876655 57777777 222 11222333578999999999877633444444
Q ss_pred cccCCCceEEEECHHHHHHH---HHcCCCeEEecCCCChHHHHHHHHH
Q 022128 250 DTEQWSNSVACIGETTASAA---KRLGLKNVYYPTHPGLEGWVDSILE 294 (302)
Q Consensus 250 ~~~~~~~~i~~IG~~Ta~~l---~~~G~~~~~v~~~~~~~~ll~~i~~ 294 (302)
... ....++.+||++.-.- .++|+..+.-...-+.+.+++.|.+
T Consensus 84 ~~~-~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~~i~~ 130 (147)
T PF04016_consen 84 LAR-NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLRAISE 130 (147)
T ss_dssp HTT-TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHHHHCT
T ss_pred hCc-cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHHHHHc
Confidence 332 2457888999987554 5568876533334577777777654
No 121
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=87.88 E-value=21 Score=32.55 Aligned_cols=171 Identities=11% Similarity=-0.033 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+...++++|++++... . .+.+ . ...+.|+||+++...- ...+.+.+. +++++.++....
T Consensus 88 ~i~~~~~~~g~~~~~~~--~----~~~~-----~-~~~~vDgiI~~~~~~~-~~~~~l~~~---~~pvV~~~~~~~---- 147 (327)
T PRK10339 88 GIETQCEKLGIELTNCY--E----HSGL-----P-DIKNVTGILIVGKPTP-ALRAAASAL---TDNICFIDFHEP---- 147 (327)
T ss_pred HHHHHHHHCCCEEEEee--c----cccc-----c-ccccCCEEEEeCCCCH-HHHHHHHhc---CCCEEEEeCCCC----
Confidence 34456778899886431 1 1111 0 2367899999874322 233444443 467888876431
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.. ++..........+..+++.|.+.. .++|.++.+.... .-+.+.+...|. +....+|......
T Consensus 148 ~~------~~~~V~~D~~~~~~~a~~~l~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~~~~ 218 (327)
T PRK10339 148 GS------GYDAVDIDLARISKEIIDFYINQG--VNRIGFIGGEDEPGKADIREVAFAEYGRLKQV-VREEDIWRGGFSS 218 (327)
T ss_pred CC------CCCEEEECHHHHHHHHHHHHHHCC--CCeEEEeCCccccchhhHHHHHHHHHHHHcCC-CChhheeecCcCh
Confidence 11 332222222233455666666542 3589999775421 123445666665 2221233321111
Q ss_pred CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHH
Q 022128 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGET 264 (302)
Q Consensus 217 ~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~ 264 (302)
....+..+. + ..+++|++++-..+. .++..+.+.. ..++.++.++..
T Consensus 219 ~~~~~~~~~~l~~~~~~~ai~~~~D~~A~-g~~~al~~~g~~vP~di~vigfD~~ 272 (327)
T PRK10339 219 SSGYELAKQMLAREDYPKALFVASDSIAI-GVLRAIHERGLNIPQDISLISVNDI 272 (327)
T ss_pred hHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeeCCh
Confidence 111122222 2 247899999988888 7777777653 235677888754
No 122
>PRK06756 flavodoxin; Provisional
Probab=87.82 E-value=6.9 Score=31.64 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=51.3
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH--------HHHHHHHHhhhcccCCCceEEEEC
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--------AVRSSWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s--------~v~~~~~~~l~~~~~~~~~i~~IG 262 (302)
+.+.+.|++.|..|....+.+.. . . ..+.++|.|+|-||. .+. .|++.+......+.+++++|
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~-~----~~~~~~d~vi~gspt~~~g~~p~~~~-~fl~~l~~~~l~~k~~~~fg 90 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---E-A----SILEQYDGIILGAYTWGDGDLPDDFL-DFYDAMDSIDLTGKKAAVFG 90 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---C-H----HHHhcCCeEEEEeCCCCCCCCcHHHH-HHHHHHhcCCCCCCEEEEEe
Confidence 34556677777776555443321 1 1 124578888888755 355 55555543323345666664
Q ss_pred H-------------HHHHHHHHcCCCe----EEecCCCChHHHHHHHHHH
Q 022128 263 E-------------TTASAAKRLGLKN----VYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 263 ~-------------~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~ 295 (302)
- ...+.|++.|++. +.+--.|+.++ ++.+.++
T Consensus 91 t~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d-~~~~~~~ 139 (148)
T PRK06756 91 SCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELTPEDED-VEKCLQF 139 (148)
T ss_pred CCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHH-HHHHHHH
Confidence 4 2334566678764 33445677655 3344443
No 123
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.23 E-value=22 Score=32.06 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=94.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.++++|++++.... . .+.+ .++..+....+.|+||+++.. ....+.+.+.+ .+++++.++...
T Consensus 21 gi~~~~~~~g~~v~~~~~---~--~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 92 (305)
T cd06324 21 FMQAAADDLGIELEVLYA---E--RDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEG---AGVKLFLVNSGL 92 (305)
T ss_pred HHHHHHHhcCCeEEEEeC---C--CCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHh---CCCeEEEEecCC
Confidence 455667788998876532 1 1222 122322111279999998654 23334444443 467899998654
Q ss_pred HHH-HHHHhhcc---CCCCceeccCCC-ccHHHHHHhcccCCCC------CCEEEEeCCCcch-------hhHHHHHHhC
Q 022128 139 ASI-FEEVIQSS---KCSLDVAFSPSK-ATGKILASELPKNGKK------KCTVLYPASAKAS-------NEIEEGLSNR 200 (302)
Q Consensus 139 a~~-l~~~~~~~---~~G~~~~~~p~~-~~~e~L~~~L~~~~~~------~~~vL~~rg~~~~-------~~L~~~L~~~ 200 (302)
... .+.. ++. ..++-..+.+.. ..++.+++.|.+...+ ..+|+++.|.... .-+.+.+++.
T Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~ 171 (305)
T cd06324 93 TEAQAREL-GPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGDPTTPAAILREAGLRRALAEH 171 (305)
T ss_pred Ccchhhcc-cccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCChHHHHHHHHHHHHHHHC
Confidence 221 1111 000 001111122232 2344455555543211 1258888765432 2345667777
Q ss_pred C-CeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH--HHHH
Q 022128 201 G-FEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA--SAAK 270 (302)
Q Consensus 201 G-~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta--~~l~ 270 (302)
| +.+.. .+| .........+..+. + .++++|+..+-..+. ..++.+.+... .++.++.++-... ..+.
T Consensus 172 g~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vp~di~vig~D~~~~~~~~~~ 248 (305)
T cd06324 172 PDVRLRQ-VVY-AGWSEDEAYEQAENLLKRYPDVRLIWAANDQMAF-GALRAAKEAGRKPGRDVLFGGVNWSPEALRAIK 248 (305)
T ss_pred CCceEee-eec-CCCCHHHHHHHHHHHHHHCCCccEEEECCchHHH-HHHHHHHHcCCCcCCCEEEEecCCCHHHHHHHH
Confidence 6 32211 122 11111111111222 2 357888888877777 67777765432 2456666654432 3444
Q ss_pred HcCCCeE
Q 022128 271 RLGLKNV 277 (302)
Q Consensus 271 ~~G~~~~ 277 (302)
.-.+..+
T Consensus 249 ~~~lttv 255 (305)
T cd06324 249 DGRLSVS 255 (305)
T ss_pred cCceEEE
Confidence 4334433
No 124
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=86.89 E-value=13 Score=32.70 Aligned_cols=177 Identities=11% Similarity=0.059 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.+++.|+++...... +.+...+.++. ..+.|+||+++...-..+.+.+.+. .+++++.++..+..
T Consensus 22 gi~~~~~~~gy~~~~~~~~------~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~--~~ipvv~~~~~~~~- 92 (260)
T cd06304 22 GLEKAEKELGVEVKYVESV------EDADYEPNLRQLAAQGYDLIFGVGFGFMDAVEKVAKEY--PDVKFAIIDGVVDA- 92 (260)
T ss_pred HHHHHHHhcCceEEEEecC------CHHHHHHHHHHHHHcCCCEEEECCcchhHHHHHHHHHC--CCCEEEEecCccCC-
Confidence 3446677789988774332 11112222222 2568999998866333343433321 35789998865421
Q ss_pred HHHHhhccCCCCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. .+.. +..+.+. +..+. .+.......++|.++.+... ..-+.+.+++.|..+....++....
T Consensus 93 --~~------~~~~-v~~d~~~~~~~a~-~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 162 (260)
T cd06304 93 --PP------NVAS-YVFREYEGSYLAG-VLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAKSVNPDITVLVIYTGSF 162 (260)
T ss_pred --CC------Ceee-eecchHHHHHHHH-HHHHHhccCCceEEEeccccHHHHHHHHHHHHHHHHhCCCcEEEEEEecCc
Confidence 01 2221 1222221 22222 22222112467888866432 2244567777886654433332211
Q ss_pred CC-CCcHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 215 VH-HVDQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 215 ~~-~~~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
.. ....+..+. + ..+|+|+.++-..+. ..++.+.+.. +.++.++.
T Consensus 163 ~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~-gv~~al~~~g---v~vigfD~ 210 (260)
T cd06304 163 FDPAKGKEAALALIDQGADVIFAAAGGTGP-GVIQAAKEAG---VYAIGVDS 210 (260)
T ss_pred cCcHHHHHHHHHHHhCCCCEEEEcCCCCch-HHHHHHHHcC---CEEEeecC
Confidence 11 111222222 2 357998888877777 6777776543 55666555
No 125
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=86.35 E-value=7.5 Score=34.33 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|++++.+..-. ..+.+...+.++. -.+.|.||+.+.. ... .+..+.+ .++++++++....
T Consensus 20 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~-~~~~~~~---~giPvV~~~~~~~ 92 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAGG---YPNLAKQIAQLEDCAAWGADAILLGAVSPDGLN-EILQQVA---ASIPVIALVNDIN 92 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHH-HHHHHHH---CCCCEEEeccCCC
Confidence 34567788898887653211 1121212222322 2479999998643 222 2333433 4678888875332
Q ss_pred HHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCC---CCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEe
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~---~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (302)
. . +....+..+.+ .+..+++.|.+... ..++|+++.|.... .-+.+.|++.|+++...
T Consensus 93 ~----~------~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~- 161 (268)
T cd06306 93 S----P------DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISAI- 161 (268)
T ss_pred C----c------ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEeee-
Confidence 1 1 22111222222 23445555554332 12689999875442 23566777777765431
Q ss_pred eeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEE--CHHHHHHHHH
Q 022128 209 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACI--GETTASAAKR 271 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~I--G~~Ta~~l~~ 271 (302)
.+ .........+..+. + .++++|+. +...+. ..++.+.+... .++.+++. .|...+.+++
T Consensus 162 ~~-~~~~~~~~~~~~~~~l~~~~~~~~i~~-~d~~a~-~~~~~l~~~g~p~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 162 KY-GDTGKEVQRKLVEEALEAHPDIDYIVG-SAVAAE-AAVGILRQRGLTDQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred cc-CCccHHHHHHHHHHHHHhCCCcCEEee-cchhhh-HHHHHHHhcCCCCCeEEEecCCCHHHHHHHHc
Confidence 11 11111111112222 2 35788765 456666 66666665432 34555544 4566677765
No 126
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.19 E-value=23 Score=31.13 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=72.9
Q ss_pred CCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCC-ceeccCCCc-cHHHHHHhcccCCC
Q 022128 101 TIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKA-TGKILASELPKNGK 176 (302)
Q Consensus 101 ~~~d~IifTS~--~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~-~~~~~p~~~-~~e~L~~~L~~~~~ 176 (302)
.+.|.||+.+. .++...++.+.+ .+++++.++..... . +. ...+.++.+ .+..+++.|.+...
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~---~gIpvV~~d~~~~~----~------~~~~~~V~~d~~~~g~~aa~~l~~~~~ 125 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKK---AGIFVVVVDRGLSS----P------GAQDLYVAGDNYGMGRVAGEYIATKLG 125 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHH---CCCeEEEEcCCCCC----C------cccceEEcCCcHHHHHHHHHHHHHHhC
Confidence 46899999864 333334444433 47889888753211 0 11 111222222 23334455554422
Q ss_pred CCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHH
Q 022128 177 KKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVN 246 (302)
Q Consensus 177 ~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~ 246 (302)
..++|+++.|... ..-+.+.|++.|..+.. .+..........+.... + .++++|+..+-..+. ..++
T Consensus 126 g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~ 202 (274)
T cd06311 126 GNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILD--RQYANWNRDDAFSVMQDLLTKFPKIDAVWAHDDDMAV-GVLA 202 (274)
T ss_pred CCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEe--ccCCCCcHHHHHHHHHHHHHhCCCcCEEEECCCcHHH-HHHH
Confidence 3468998876432 13456677777754432 21111110111112222 2 357899998888777 7777
Q ss_pred hhhcccCC-CceEEE
Q 022128 247 LISDTEQW-SNSVAC 260 (302)
Q Consensus 247 ~l~~~~~~-~~~i~~ 260 (302)
.+++.... ++.+++
T Consensus 203 al~~~g~~~~~~ivg 217 (274)
T cd06311 203 AIKQAGRTDIKFVVG 217 (274)
T ss_pred HHHHcCCCCCceEEE
Confidence 77764332 344444
No 127
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=85.79 E-value=23 Score=30.84 Aligned_cols=180 Identities=11% Similarity=0.063 Sum_probs=91.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.+++.|++++..+.- .+.+...+.++. -.+.|+||+++.. .....++.+.+ .+++++.++...
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~-----~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 90 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIAN-----QDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKK---AGIPVITVDIAA 90 (267)
T ss_pred HHHHHHHHhcCCEEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEEcccC
Confidence 44566778889888764321 121111122221 2579999997653 23334454544 357788887532
Q ss_pred HHHHHHHhhccCCCCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhC-CCeeEEEeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTY 210 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY 210 (302)
. .. +....+..+.+. +...++.|.+.....++++++.+... ..-+.+.+++. |..+... +
T Consensus 91 ~----~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~ 158 (267)
T cd06322 91 E----GV------AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAV--Q 158 (267)
T ss_pred C----CC------ceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEe--c
Confidence 1 11 111112233322 23344455443222358888865422 13455677777 7655321 1
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
.........+.... + .++++|+..+-..+. ...+.+.+....++.++.++..
T Consensus 159 -~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-~~~~al~~~g~~di~vvg~d~~ 214 (267)
T cd06322 159 -PGITRAEALTAAQNILQANPDLDGIFAFGDDAAL-GAVSAIKAAGRDNVKVIGFDGM 214 (267)
T ss_pred -CCCChHHHHHHHHHHHHhCCCCCEEEEcCCcHHH-HHHHHHHHCCCCCeEEEEecCC
Confidence 11111111111112 2 357899999888888 7777776644345677777543
No 128
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=85.71 E-value=40 Score=33.54 Aligned_cols=144 Identities=23% Similarity=0.179 Sum_probs=83.8
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-h
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG-~ 136 (302)
..+..++.+.|++.|+++..++.. ....++ |.++.+.+.-|..++..-..+.+.|++ .+.+-+...=+| .
T Consensus 174 ~~D~~EikrlL~~~Gi~vn~v~p~----g~s~~d----i~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~ 245 (519)
T PRK02910 174 RDDLTELRRLLATLGIDVNVVAPL----GASPAD----LKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVG 245 (519)
T ss_pred hhHHHHHHHHHHHcCCeEEEEeCC----CCCHHH----HHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHH
Confidence 356688999999999999877531 122232 336677788888888766667777764 344444445566 4
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHH---------HHHhcccCCCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEE
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKI---------LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVR 206 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~---------L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~ 206 (302)
.|.+.|++..+. -|.....+ +.+..+. +...+......|+|+.+..+..-.--+...|. +.|.+|..
T Consensus 246 ~T~~fL~~la~~--~g~~~~~~-e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~ 322 (519)
T PRK02910 246 ATARFIREVAEL--LNLDGADL-EAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVG 322 (519)
T ss_pred HHHHHHHHHHHH--hCCChhhh-HHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEE
Confidence 466666554110 04322100 0000001 10011111126789988877666677888888 79999987
Q ss_pred Eeeeeee
Q 022128 207 LNTYTTE 213 (302)
Q Consensus 207 ~~vY~~~ 213 (302)
+-+|...
T Consensus 323 ~gt~~~~ 329 (519)
T PRK02910 323 AGTYLRE 329 (519)
T ss_pred EecCCcc
Confidence 6666543
No 129
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.60 E-value=9.6 Score=29.51 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.-+...|+..|++++.+... . + .+.+.+.+. -.++|.|.+++. ..+..+.+.+++.+.+++++++-|..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~--~--~-~~~l~~~~~-~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD--V--P-PEEIVEAAK-EEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC--C--C-HHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 34667889999999776622 1 1 234555552 357888888875 33444556666654347888988887
Q ss_pred hHH---HHHHHhhccCCCCceecc
Q 022128 138 TAS---IFEEVIQSSKCSLDVAFS 158 (302)
Q Consensus 138 Ta~---~l~~~~~~~~~G~~~~~~ 158 (302)
... .+++. |++..+.
T Consensus 91 ~~~~~~~~~~~------G~D~~~~ 108 (119)
T cd02067 91 VTRDFKFLKEI------GVDAYFG 108 (119)
T ss_pred CChhHHHHHHc------CCeEEEC
Confidence 665 55666 8765443
No 130
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=85.33 E-value=7.2 Score=36.35 Aligned_cols=175 Identities=13% Similarity=0.100 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhc--CCCccEEEEeC--hHHHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS--~~av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
-..+..+++|++++.. |. ..+.+.-.+.++. -.++|.|+++. ++++...++.+.+ .+++++++....
T Consensus 44 Gi~~aa~~~G~~v~~~~~~-----~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~---~gIpVV~~d~~~ 115 (336)
T PRK15408 44 GAKEAGKELGVDVTYDGPT-----EPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ---RGVKVLTWDSDT 115 (336)
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEeCCCC
Confidence 3456677889888742 21 1122211122322 25799999974 3444555555544 367888887653
Q ss_pred HHHHHHHhhccCCCCceeccC-C--CccHHHHHHhcccCCC-CCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEE
Q 022128 139 ASIFEEVIQSSKCSLDVAFSP-S--KATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p-~--~~~~e~L~~~L~~~~~-~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~ 207 (302)
... .. ..++. . ...++.+++.+.+... .+++|+++.|.... +.+.+.+.+.+-.+..+
T Consensus 116 ~~~----------~~-~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv 184 (336)
T PRK15408 116 KPE----------CR-SYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIV 184 (336)
T ss_pred CCc----------cc-eEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEE
Confidence 211 11 11121 1 1223333344443333 35689888875431 23344454332223222
Q ss_pred eeeeeecCCCCcHH-------HHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEE
Q 022128 208 NTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 208 ~vY~~~~~~~~~~~-------~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~I 261 (302)
. +.....+... ++..-.++++|+.++...+. ...+.+++....++.++.+
T Consensus 185 ~---~~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~-Ga~~Al~~~g~~~v~VvG~ 241 (336)
T PRK15408 185 T---TQFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALP-AAAQAAENLKRDKVAIVGF 241 (336)
T ss_pred e---ecCCCCcHHHHHHHHHHHHHHCCCCcEEEECCCccHH-HHHHHHHhCCCCCEEEEEe
Confidence 2 2222222211 12212467888777666555 4555555433223444443
No 131
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=84.89 E-value=45 Score=33.41 Aligned_cols=130 Identities=12% Similarity=0.101 Sum_probs=81.7
Q ss_pred CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 128 ~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
+..++.-..+|++.+++++ .++|..+ +.++-++.+.|......+.++.++.-...-+.
T Consensus 64 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~--------------- 121 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGFDVMQALARARKLTSSIGVVTYQETIPA--------------- 121 (538)
T ss_pred CCcEEEECchHHHHHHhhC-----CCCEEEe--cCCHhHHHHHHHHHHhcCCcEEEEecCcccHH---------------
Confidence 4566666677888888875 5655444 34555566666433223345555443322111
Q ss_pred eeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChH
Q 022128 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLE 286 (302)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~ 286 (302)
...+.+.+ .+++.+.+.+...++ ..++.+++. +..+++=|-.|.+.++++|.+.+++- +.+
T Consensus 122 -----------~~~~~~~l~~~i~~~~~~~~~e~~-~~v~~lk~~---G~~~vvG~~~~~~~A~~~g~~g~~~~---s~e 183 (538)
T PRK15424 122 -----------LVAFQKTFNLRIEQRSYVTEEDAR-GQINELKAN---GIEAVVGAGLITDLAEEAGMTGIFIY---SAA 183 (538)
T ss_pred -----------HHHHHHHhCCceEEEEecCHHHHH-HHHHHHHHC---CCCEEEcCchHHHHHHHhCCceEEec---CHH
Confidence 11122222 366778888999999 777666653 56777666688889999999987653 458
Q ss_pred HHHHHHHHHHH
Q 022128 287 GWVDSILEALR 297 (302)
Q Consensus 287 ~ll~~i~~~~~ 297 (302)
.+.+++.+++.
T Consensus 184 ~i~~a~~~A~~ 194 (538)
T PRK15424 184 TVRQAFEDALD 194 (538)
T ss_pred HHHHHHHHHHH
Confidence 88888888764
No 132
>PLN02928 oxidoreductase family protein
Probab=84.81 E-value=31 Score=32.44 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=24.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
.|+++.++.-..-...+.+.|+..|.+|..+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 5789999977666677899999999877443
No 133
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=84.05 E-value=31 Score=30.86 Aligned_cols=182 Identities=10% Similarity=-0.023 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++..+.. .+.+.-.+.++. -.++|+||+.+...-.-..... .. ...+++.+|....
T Consensus 55 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~~~-~~--~~~pvv~~~~~~~- 125 (309)
T PRK11041 55 RGIEVTAAEHGYLVLIGDCA-----HQNQQEKTFVNLIITKQIDGMLLLGSRLPFDASKEE-QR--NLPPMVMANEFAP- 125 (309)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHH-Hh--cCCCEEEEccccC-
Confidence 34566677789887753221 121111122211 2568999998643111111111 11 1235777775421
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++..........++..++.|.+.. .++|.++.|.... .-+.+.+++.|..+.....+...
T Consensus 126 ---~~------~~~~V~~Dn~~~g~~a~~~l~~~G--~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 194 (309)
T PRK11041 126 ---EL------ELPTVHIDNLTAAFEAVNYLHELG--HKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGD 194 (309)
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHcC--CceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 11 322212222223444556666543 3688888765431 23456677777654321111111
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+.... + ..+++|+.++...+. .++..+.+... .++.+++++...
T Consensus 195 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-gv~~al~~~g~~ip~di~vvg~D~~~ 252 (309)
T PRK11041 195 FTFEAGAKALKQLLDLPQPPTAVFCHSDVMAL-GALSQAKRMGLRVPQDLSIIGFDDID 252 (309)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCcceEEEEeCCch
Confidence 111111122222 2 247899988888887 67777766432 246677777653
No 134
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.00 E-value=28 Score=30.38 Aligned_cols=146 Identities=9% Similarity=0.061 Sum_probs=75.5
Q ss_pred CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCC
Q 022128 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKK 177 (302)
Q Consensus 101 ~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~ 177 (302)
.+.|+||+.+.. +..-..+.+.+ .+++++.+|.... +....+..+. ..++.+++.|.+....
T Consensus 56 ~~~dgiIi~~~~~~~~~~~i~~~~~---~~ipvv~~~~~~~------------~~~~~V~~d~~~~g~~~~~~l~~~~~g 120 (271)
T cd06321 56 AKVDLILLNAVDSKGIAPAVKRAQA---AGIVVVAVDVAAE------------GADATVTTDNVQAGEISCQYLADRLGG 120 (271)
T ss_pred hCCCEEEEeCCChhHhHHHHHHHHH---CCCeEEEecCCCC------------CccceeeechHHHHHHHHHHHHHHhCC
Confidence 568999997643 22333344433 3678999986421 1111112222 2344455555554223
Q ss_pred CCEEEEeCCCcc------hhhHHHHHHhC-CCeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHH
Q 022128 178 KCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVN 246 (302)
Q Consensus 178 ~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~ 246 (302)
.++|.++.|... ..-+.+.+++. |...... .+..........+..+. + .++++|+..+-..+. .+.+
T Consensus 121 ~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~ 198 (271)
T cd06321 121 KGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSD-DQNGKGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAI-GADL 198 (271)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEee-ecCCCCChhhHHHHHHHHHHhCCCCCEEEECCchhHH-HHHH
Confidence 368999977543 12344556655 4432111 11111111111112222 2 357999999888887 7777
Q ss_pred hhhcccCCCceEEEECH
Q 022128 247 LISDTEQWSNSVACIGE 263 (302)
Q Consensus 247 ~l~~~~~~~~~i~~IG~ 263 (302)
.+++....++.+++++.
T Consensus 199 al~~~g~~di~v~g~d~ 215 (271)
T cd06321 199 AAKQAGRNDIKITSVDG 215 (271)
T ss_pred HHHHcCCCCcEEEEecC
Confidence 77775544577777753
No 135
>PRK09701 D-allose transporter subunit; Provisional
Probab=83.80 E-value=20 Score=32.56 Aligned_cols=186 Identities=9% Similarity=0.011 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|+++..+..- ...+.+...+.++. -.++|+||+..... ....+..+.+ .+++++++|...
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~---~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~---~giPvV~~~~~~ 117 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASP---SEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKI 117 (311)
T ss_pred HHHHHHHHHcCCeEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEeCCCC
Confidence 34456677889888765211 11122211222222 24689999976432 2222333333 368899998654
Q ss_pred HH-HHHHHhhccCCCCceecc-CCC-ccHHHHHHhcccC-CCCCCEEEEeCCCcch-------hhHHHHHHhCC-CeeEE
Q 022128 139 AS-IFEEVIQSSKCSLDVAFS-PSK-ATGKILASELPKN-GKKKCTVLYPASAKAS-------NEIEEGLSNRG-FEVVR 206 (302)
Q Consensus 139 a~-~l~~~~~~~~~G~~~~~~-p~~-~~~e~L~~~L~~~-~~~~~~vL~~rg~~~~-------~~L~~~L~~~G-~~v~~ 206 (302)
.. .+... .+-...++ ... ..++..++.|.+. ..++++|+++.|.... .-+.+.|++.| ..+..
T Consensus 118 ~~~~~~~~-----~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~ 192 (311)
T PRK09701 118 DMDNLKKA-----GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 192 (311)
T ss_pred Cccccccc-----CCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 21 01000 01111112 222 2344455555543 2224689988765432 34567787776 44321
Q ss_pred EeeeeeecCCCCc---HHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 207 LNTYTTEPVHHVD---QTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 207 ~~vY~~~~~~~~~---~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
.+. ..... .+..+. + ..+|+|+..+...+. ..++.+++... .++.+++++..-
T Consensus 193 --~~~---~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d~~A~-g~~~al~~~G~~~dv~vvg~d~~~ 253 (311)
T PRK09701 193 --SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAM-GVAQAVANAGKTGKVLVVGTDGIP 253 (311)
T ss_pred --ecC---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcchHH-HHHHHHHHcCCCCCEEEEEeCCCH
Confidence 111 11111 122222 2 358999999888887 77777765432 356788886653
No 136
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=83.53 E-value=45 Score=32.30 Aligned_cols=200 Identities=10% Similarity=0.020 Sum_probs=99.6
Q ss_pred hHHHHHHHHhCCCcEEEeceE------------Eeee-CCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCC
Q 022128 62 NGKLIKALAKHRIDCLELPLI------------QHAQ-GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~------------~~~~-~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~ 127 (302)
..++.+.|++.|+++..+|-+ ...+ ....+++ .+..+...-+..++..-..+.+.+++ .+.+
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i----~~~~~A~~niv~~~~~~~~~a~~Le~~~giP 251 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEEL----KDAGNAKATLALQEYATEKTAKFLEKKCKVP 251 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHH----HhhccCcEEEEECccccHHHHHHHHHHhCCC
Confidence 689999999999999876521 1111 1122333 34556666666666544445555654 4444
Q ss_pred CceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 128 NVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 128 ~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
-+.. +-+|- .|.+.+++.... -|.++ |.... -+.+.+.+.+.. ..|+++.+..+..-.--+.+.|.+.|
T Consensus 252 ~~~~~~p~G~~~t~~~l~~l~~~--~g~~~---~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~elG 326 (435)
T cd01974 252 VETLNMPIGVAATDEFLMALSEL--TGKPI---PEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLELG 326 (435)
T ss_pred eeecCCCcChHHHHHHHHHHHHH--hCCCC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHHCC
Confidence 2222 23443 344444443100 04432 21111 112334443321 25788887765555556788999999
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHHcCC----CCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeE
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQALS----IPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 277 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~~~----~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~ 277 (302)
.++..+.++... +...+++...+.. .+..++.++...+ +.+.+.+. +..++.-+..-...++++|+..+
T Consensus 327 m~v~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~d~~e--~~~~i~~~---~pDliiG~s~~~~~a~~~gip~v 399 (435)
T cd01974 327 MEPVHVLTGNGG--KRFEKEMQALLDASPYGAGAKVYPGKDLWH--LRSLLFTE---PVDLLIGNTYGKYIARDTDIPLV 399 (435)
T ss_pred CEEEEEEeCCCC--HHHHHHHHHHHhhcCCCCCcEEEECCCHHH--HHHHHhhc---CCCEEEECccHHHHHHHhCCCEE
Confidence 998665553311 1111222211222 3555555554333 44444432 23344333445566677887654
No 137
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.20 E-value=41 Score=32.38 Aligned_cols=174 Identities=12% Similarity=0.044 Sum_probs=94.7
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~ 123 (302)
-|..+++|+++.+- .+...+.|++.|+ ++...+. ..+.+++. +.+.++|.+++.+..-+. .+++ .
T Consensus 6 ~~~~~~~ili~~~~--~~~~~~~l~~~~~~~v~~~~~-----~~~~~~~~---~~~~~~d~l~~~~~~~~~~~~l~---~ 72 (409)
T PRK11790 6 LPKDKIKFLLLEGV--HQSAVEVLRAAGYTNIEYHKG-----ALDEEELI---EAIKDAHFIGIRSRTQLTEEVLA---A 72 (409)
T ss_pred CCCCCeEEEEECCC--CHHHHHHHHhcCCceEEECCC-----CCCHHHHH---HHcCCCCEEEEeCCCCCCHHHHh---h
Confidence 45567899999754 3556677888877 5554321 11223333 345778988776542222 1222 2
Q ss_pred cCCCCceEE---EEChhh--HHHHHHHhhccCCCCceeccCCCccHHHHHHh--------cc------------cC----
Q 022128 124 AGTPNVRIG---VVGAGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LP------------KN---- 174 (302)
Q Consensus 124 ~~~~~~~i~---aVG~~T--a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------L~------------~~---- 174 (302)
.++++++ .+|-.. .+++.+. |+.+...|. .+++..++. .. .|
T Consensus 73 --~~~Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~ 143 (409)
T PRK11790 73 --AEKLVAIGCFCIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA 143 (409)
T ss_pred --CCCCeEEEECceecccccHHHHHhC------CCEEEeCCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc
Confidence 2355554 333332 2456666 998876664 223222221 00 01
Q ss_pred ----CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC--cHHHHHHcCCCCEEEEECcHHHH
Q 022128 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 175 ----~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
...|+++.++.-..-...+.+.++..|.+|..+..+........ ...+-+.+...|+|++.-|.+-+
T Consensus 144 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~ 216 (409)
T PRK11790 144 AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPS 216 (409)
T ss_pred cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChH
Confidence 12577888887666666789999999988755444322111100 01122224678999998886553
No 138
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=83.08 E-value=5.8 Score=30.16 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=51.4
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcc--hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHH
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~--~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
+.+.++.|.+ .|+++.++..+.. +..+.+.|+..|+.+ ..+ =++||..++.
T Consensus 19 a~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~-------------~~~-----------~i~ts~~~~~ 71 (101)
T PF13344_consen 19 AVEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIPV-------------DED-----------EIITSGMAAA 71 (101)
T ss_dssp HHHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT---------------GG-----------GEEEHHHHHH
T ss_pred HHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcCC-------------CcC-----------EEEChHHHHH
Confidence 4445566665 4688888877654 469999999999765 111 1788988888
Q ss_pred HHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCC
Q 022128 242 SSWVNLISDTEQWSNSVACIG-ETTASAAKRLGL 274 (302)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~~IG-~~Ta~~l~~~G~ 274 (302)
.+++... ...+++++| +...+.+++.|+
T Consensus 72 -~~l~~~~----~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 72 -EYLKEHK----GGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp -HHHHHHT----TSSEEEEES-HHHHHHHHHTTE
T ss_pred -HHHHhcC----CCCEEEEEcCHHHHHHHHHcCC
Confidence 6655421 145677765 556677888886
No 139
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=82.85 E-value=38 Score=30.94 Aligned_cols=138 Identities=12% Similarity=0.012 Sum_probs=73.8
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCE
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~ 180 (302)
++.+.||-..........+.+.+ .+++++..+.... .+...- .-+.. ..........+++.+.+.. .++
T Consensus 66 ~~V~~iig~~~s~~~~~~~~~~~---~~ip~v~~~~~~~-~~~~~~----~~~~~-~~~~~~~~~~~~~~l~~~g--~~~ 134 (341)
T cd06341 66 DKVVAVVGGSSGAGGSALPYLAG---AGIPVIGGAGTSA-WELTSP----NSFPF-SGGTPASLTTWGDFAKDQG--GTR 134 (341)
T ss_pred cCceEEEecccccchhHHHHHhh---cCCceecCCCCCc-hhhcCC----CeEEe-cCCCcchhHHHHHHHHHcC--CcE
Confidence 46777777554444333344443 2455555543221 111110 01211 1122234566667776543 456
Q ss_pred EEEeCCCc------chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-HHHHHHHHhhhcc
Q 022128 181 VLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSSWVNLISDT 251 (302)
Q Consensus 181 vL~~rg~~------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-~v~~~~~~~l~~~ 251 (302)
+.++..+. ....+.+.+++.|.++.....|... ..+....+..+ .++|+|++.+.. .+. .+++.+.+.
T Consensus 135 ~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~i~~~~pdaV~~~~~~~~a~-~~~~~~~~~ 211 (341)
T cd06341 135 AVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT--APDPTPQAQQAAAAGADAIITVLDAAVCA-SVLKAVRAA 211 (341)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC--CCCHHHHHHHHHhcCCCEEEEecChHHHH-HHHHHHHHc
Confidence 66553322 2346788899999988776666543 12222223332 579999998877 666 787877765
Q ss_pred c
Q 022128 252 E 252 (302)
Q Consensus 252 ~ 252 (302)
.
T Consensus 212 G 212 (341)
T cd06341 212 G 212 (341)
T ss_pred C
Confidence 3
No 140
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=82.34 E-value=27 Score=29.91 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=58.5
Q ss_pred CCeEEEeCCCCCh-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHHH
Q 022128 50 NPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~~ 119 (302)
+++|++.-+.++. .-....|+..|++|+++.. ..+ .+.+.+.+ .-.++|.|.+++. ..+..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~----~~p-~~~l~~~~-~~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR----DVP-PEEFVEAV-KEHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC----CCC-HHHHHHHH-HHcCCCEEEEeccccccHHHHHHHHH
Confidence 5677777665443 2356688999999987761 111 24455555 3356788777652 34455566
Q ss_pred HHHHcCC-CCceEEEEChhhHHHHHHHh
Q 022128 120 AWKEAGT-PNVRIGVVGAGTASIFEEVI 146 (302)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~Ta~~l~~~~ 146 (302)
.+++.+. +++++++-|......+.+.+
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~~ 183 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADEI 183 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHHc
Confidence 6666653 48999999987776666664
No 141
>PRK06756 flavodoxin; Provisional
Probab=81.91 E-value=8.1 Score=31.20 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--------av~~f~~~l~~~~~~~~~i~aV 134 (302)
+.+.+.|++.|.++..+++-+.. . . ..+.++|.|+|-||. .+..|++.+....+.+.++++.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~---~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~f 89 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---E---A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVF 89 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---C---H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34455566677777655443321 1 1 135679999998765 2566666665555678889888
Q ss_pred Chhh
Q 022128 135 GAGT 138 (302)
Q Consensus 135 G~~T 138 (302)
|-.+
T Consensus 90 gt~~ 93 (148)
T PRK06756 90 GSCD 93 (148)
T ss_pred eCCC
Confidence 7744
No 142
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=81.32 E-value=57 Score=31.99 Aligned_cols=217 Identities=9% Similarity=0.035 Sum_probs=112.9
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEECh-
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA- 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~~i~aVG~- 136 (302)
.++..++...|++.|+++..... .....+++ .+..+...-+..++.+.....+.+++. +.+-+.+--+|-
T Consensus 219 ~gd~~eik~lL~~~Gi~v~~~~s----g~~t~~~i----~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~ 290 (466)
T TIGR01282 219 GGDAWESRILLEEIGLRVVAQWS----GDGTLNEM----ENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPT 290 (466)
T ss_pred cccHHHHHHHHHHcCCeEEEEEC----CCCCHHHH----HhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHH
Confidence 34668899999999999873221 11122323 355666777777777666666777653 443222212553
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCc-----cHHHHHHhccc-C--CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKA-----TGKILASELPK-N--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~-----~~e~L~~~L~~-~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
.|.+.|++....- |.. +|+.. .-++++..+.+ . ...|+|+.+..|......+...|++.|.+|...-
T Consensus 291 ~T~~~Lr~ia~~~--g~~---i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g 365 (466)
T TIGR01282 291 KIAESLRKIAEFF--DDE---IKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTG 365 (466)
T ss_pred HHHHHHHHHHHHH--Cch---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEe
Confidence 4666666552100 321 12110 00112222222 1 1268998888776666677789999999986333
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEe-cCC-----
Q 022128 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-PTH----- 282 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v-~~~----- 282 (302)
++... ....+...+.+. -+.+++-.++-.+ +.+.+.+. +..++.-|..-.-.++++|+.-+-+ ...
T Consensus 366 ~~~~~--~~~~~~~~~~~~-~~~~i~~~~d~~e--l~~~i~~~---~pDl~ig~~~~~~~a~k~gIP~~~~~~~~~~~~~ 437 (466)
T TIGR01282 366 YEFAH--NDDYERTTKYMK-DGTLIYDDVTHYE--FEEFVEKL---KPDLVGSGIKEKYVFQKMGVPFRQMHSWDYSGPY 437 (466)
T ss_pred eecCC--HHHHHHHHHhcC-CCeEEeeCCCHHH--HHHHHHHh---CCCEEEecCCccceeeecCCCccccccccccCcc
Confidence 32111 122222233332 3566665544333 33444332 2345555556666677778765432 112
Q ss_pred CChHHHHHHHHHHH
Q 022128 283 PGLEGWVDSILEAL 296 (302)
Q Consensus 283 ~~~~~ll~~i~~~~ 296 (302)
...+++++.+.+..
T Consensus 438 ~Gy~G~~~l~~~i~ 451 (466)
T TIGR01282 438 HGYDGFAIFARDMD 451 (466)
T ss_pred hhHhHHHHHHHHHH
Confidence 25667776655544
No 143
>PRK06703 flavodoxin; Provisional
Probab=80.95 E-value=20 Score=28.97 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=42.7
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc--------HHHHHHHHHhhhcccCCCceEEEECH
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP--------SAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~--------s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
.|.+.|...|..|+...+-+. ... .+.++|.|+|-|| ..+. .|++.+......+.+++++|-
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~-----~~~----~l~~~d~viigspt~~~g~~p~~~~-~f~~~l~~~~l~~k~~~vfg~ 90 (151)
T PRK06703 21 LIKVSLDAFDHEVVLQEMDGM-----DAE----ELLAYDGIILGSYTWGDGDLPYEAE-DFHEDLENIDLSGKKVAVFGS 90 (151)
T ss_pred HHHHHHHhcCCceEEEehhhC-----CHH----HHhcCCcEEEEECCCCCCcCcHHHH-HHHHHHhcCCCCCCEEEEEcc
Confidence 445556667766654433211 111 2457788888663 3567 677766543334556666652
Q ss_pred -------------HHHHHHHHcCCCe
Q 022128 264 -------------TTASAAKRLGLKN 276 (302)
Q Consensus 264 -------------~Ta~~l~~~G~~~ 276 (302)
...+.|++.|++.
T Consensus 91 g~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 91 GDTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCEE
Confidence 1566788888864
No 144
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.35 E-value=23 Score=32.34 Aligned_cols=150 Identities=15% Similarity=0.069 Sum_probs=81.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH----HHHHHHHc-CCCCceEEEEChhhH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV----FLEAWKEA-GTPNVRIGVVGAGTA 139 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~----f~~~l~~~-~~~~~~i~aVG~~Ta 139 (302)
-.+.+++.|++..+.++-+.....+...+-+.++...+++.+++|-|---.. +++.+... ..+.+.-+-.|.-.
T Consensus 54 ~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l~- 132 (283)
T PRK14192 54 KGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMA- 132 (283)
T ss_pred HHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCccc-
Confidence 3456778899998888743222112222333343445789999999943322 33333111 11222222222210
Q ss_pred HHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
. |- ..+.| .|..++++.|.... ..|++++++.... ...-+...|.+.|+.|+-+ .+.
T Consensus 133 -----~------~~-~~~~p--~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~---~~~--- 192 (283)
T PRK14192 133 -----M------GE-AAYGS--ATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTIC---HSR--- 192 (283)
T ss_pred -----c------CC-CcccC--CcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEE---eCC---
Confidence 1 21 11232 34577777776543 2688999886554 6667888888999866433 331
Q ss_pred CCcHHHHHHcCCCCEEEEECc
Q 022128 217 HVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 217 ~~~~~~~~~~~~~d~ivftS~ 237 (302)
...+.+.+.+.|+|+-+.+
T Consensus 193 --t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 193 --TQNLPELVKQADIIVGAVG 211 (283)
T ss_pred --chhHHHHhccCCEEEEccC
Confidence 1122333468898888874
No 145
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=80.33 E-value=5.8 Score=31.99 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=44.7
Q ss_pred EEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCC-------------CCcHHHHHHcCCCCEEEEECc-
Q 022128 180 TVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVH-------------HVDQTVLKQALSIPVVAVASP- 237 (302)
Q Consensus 180 ~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~-------------~~~~~~~~~~~~~d~ivftS~- 237 (302)
||+++.|... .+.+.+.|++.|++++.+.+.+. +.+ +...++.+.+...|.|+|.||
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~ 80 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPV 80 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecE
Confidence 4566655432 23667778888888888877765 211 112334444568899999997
Q ss_pred ------HHHHHHHHHhhh
Q 022128 238 ------SAVRSSWVNLIS 249 (302)
Q Consensus 238 ------s~v~~~~~~~l~ 249 (302)
..++ .|++.+.
T Consensus 81 y~~~~s~~lK-~~lD~~~ 97 (152)
T PF03358_consen 81 YNGSVSGQLK-NFLDRLS 97 (152)
T ss_dssp BTTBE-HHHH-HHHHTHH
T ss_pred EcCcCChhhh-HHHHHhc
Confidence 5788 8888886
No 146
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.00 E-value=15 Score=28.33 Aligned_cols=83 Identities=14% Similarity=0.251 Sum_probs=48.5
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc--H---HHHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP--S---AVRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~--s---~v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+...+...|+..|++|..+-.+ .+.+++.+.+ .++|+|.+++. . .+. .+.+.+++....++++++-
T Consensus 15 G~~~~~~~l~~~G~~V~~lg~~------~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~-~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVD------VPPEEIVEAAKEEDADAIGLSGLLTTHMTLMK-EVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHHcCCCEEEEeccccccHHHHH-HHHHHHHHcCCCCCeEEEE
Confidence 3456788899999988443321 1222333332 58898888775 2 233 3444444432225667777
Q ss_pred CHHHHH---HHHHcCCCeEE
Q 022128 262 GETTAS---AAKRLGLKNVY 278 (302)
Q Consensus 262 G~~Ta~---~l~~~G~~~~~ 278 (302)
|..... .+++.|+..++
T Consensus 88 G~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred CCCCChhHHHHHHcCCeEEE
Confidence 765554 67888987643
No 147
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=79.88 E-value=9.4 Score=32.64 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=38.4
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCC-----C---CcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhhc
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVH-----H---VDQTVLKQALSIPVVAVASP-------SAVRSSWVNLISD 250 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~-----~---~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~~ 250 (302)
.+.+.|.+.|.+++.+.+|+-...+ . ......+.+...|.|+|.|| ..++ +|++++..
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LK-n~iD~l~~ 94 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALK-TLLDLLPE 94 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHH-HHHHhCCh
Confidence 5566777789999888888532210 0 11123333567899999998 6778 88888754
No 148
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=79.67 E-value=19 Score=34.33 Aligned_cols=163 Identities=10% Similarity=0.103 Sum_probs=89.6
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~ 130 (302)
|+|++..... ...+.|++.| ++...|-..+ . . + .+.++|.++..|..-+..- +.+ . +++|
T Consensus 1 mkIl~d~~~~---~~~~~~~~~~-ev~~~~~~~~---~-~----~---~l~daD~liv~s~t~v~~~---ll~-~-~~Lk 60 (378)
T PRK15438 1 MKILVDENMP---YARELFSRLG-EVKAVPGRPI---P-V----A---QLADADALMVRSVTKVNES---LLA-G-KPIK 60 (378)
T ss_pred CEEEEeCCcc---hHHHHHhhcC-cEEEeCCCCC---C-H----H---HhCCCcEEEEcCCCCCCHH---Hhc-C-CCCe
Confidence 5688875432 3345665554 7766553211 1 1 1 2467899988776444322 212 1 4566
Q ss_pred EE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cccC---CCCCCEEEEeCCCcchhhHHH
Q 022128 131 IG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPKN---GKKKCTVLYPASAKASNEIEE 195 (302)
Q Consensus 131 i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~~---~~~~~~vL~~rg~~~~~~L~~ 195 (302)
++ ..|.++ .+++++. |+.+.-.|. .++..+++. +.+. ...|++|.++.-..-...+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~ 133 (378)
T PRK15438 61 FVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQA 133 (378)
T ss_pred EEEECcccccccCHHHHHHC------CCEEEECCC-cCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHH
Confidence 54 333333 2566777 998866654 233333221 1121 126889999977776778899
Q ss_pred HHHhCCCeeEEEeeeeeecCCC-CcHHHHHHcCCCCEEEEECcHHH
Q 022128 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 240 (302)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~~~~~d~ivftS~s~v 240 (302)
.|+..|.+|..+.-+....... ....+-+.+.+.|+|++..|.+-
T Consensus 134 ~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 134 RLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK 179 (378)
T ss_pred HHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC
Confidence 9999998886554332211111 00111122357899999888543
No 149
>PRK10537 voltage-gated potassium channel; Provisional
Probab=79.19 E-value=20 Score=34.31 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=73.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE----------eeeC--CCchHHHHHHhcCCCccEEEEeChHHHHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ----------HAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~----------~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~~f 117 (302)
..+|+|+--..-...+.+.|++.|.+++.+---+ +... .|.+.|+++ ++++.++++.++.+-.+..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~A--gI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKA--GAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhc--CcccCCEEEEcCCChHHHH
Confidence 5689999887777889999999998775442100 1111 122223322 5678999999888766555
Q ss_pred HHHH--HHcCCCCceEEE--EChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 118 LEAW--KEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 118 ~~~l--~~~~~~~~~i~a--VG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.-.+ ++.+ ++.++++ -.+...+.+++. |.+..+.|..-.++.+++.+.
T Consensus 318 ~ivL~ar~l~-p~~kIIa~v~~~~~~~~L~~~------GaD~VIsp~~l~g~~la~~l~ 369 (393)
T PRK10537 318 FVVLAAKEMS-SDVKTVAAVNDSKNLEKIKRV------HPDMIFSPQLLGSELLARTLN 369 (393)
T ss_pred HHHHHHHHhC-CCCcEEEEECCHHHHHHHHhc------CCCEEECHHHHHHHHHHHHhc
Confidence 4433 3333 4556654 466677778888 998888887777777776664
No 150
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=78.95 E-value=16 Score=31.14 Aligned_cols=55 Identities=16% Similarity=-0.066 Sum_probs=44.0
Q ss_pred cHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC
Q 022128 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (302)
Q Consensus 163 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (302)
+.+.+.+.+.+...+|++++++.+......+.+..+..|..+++..+|+....+.
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 177 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDG 177 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCC
Confidence 3455556666666678899999999888899999999999999999998876553
No 151
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=78.90 E-value=14 Score=27.80 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCEEEEeCCCcch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhccc
Q 022128 178 KCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTE 252 (302)
Q Consensus 178 ~~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~ 252 (302)
.++||+.||.+.. ..+.+.++++|+++ .++.... .++.....++| +++.+|.... .+-+.-+...
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~---~v~a~~~-----~~~~~~~~~~D-vill~pqi~~-~~~~i~~~~~ 72 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPV---KIAAGSY-----GAAGEKLDDAD-VVLLAPQVAY-MLPDLKKETD 72 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcE---EEEEecH-----HHHHhhcCCCC-EEEECchHHH-HHHHHHHHhh
Confidence 3689999998754 46677788888764 2222211 11112235678 5666666555 4433322222
Q ss_pred CCCceEEEECHHHHHH
Q 022128 253 QWSNSVACIGETTASA 268 (302)
Q Consensus 253 ~~~~~i~~IG~~Ta~~ 268 (302)
..++++..|.+.....
T Consensus 73 ~~~ipv~~I~~~~Y~~ 88 (95)
T TIGR00853 73 KKGIPVEVINGAQYGK 88 (95)
T ss_pred hcCCCEEEeChhhccc
Confidence 3357899998865443
No 152
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=78.87 E-value=24 Score=27.15 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=54.6
Q ss_pred CEEEEeCCCcch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~ 251 (302)
++||+.||.+-. ..+.+.++++|+++. +... +. .+..... .++|+ +++.|. ++ +..+.+++.
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~---i~a~---~~--~e~~~~~~~~~~Dv-Ill~PQ-i~-~~~~~i~~~ 70 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIE---VDAI---TA--TEGEKAIAAAEYDL-YLVSPQ-TK-MYFKQFEEA 70 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceE---EEEe---cH--HHHHHhhccCCCCE-EEEChH-HH-HHHHHHHHH
Confidence 479999998764 356777888887642 2211 11 1111111 35774 555555 44 444444432
Q ss_pred -cCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022128 252 -EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 252 -~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~ 295 (302)
...++++.+|-+. ++.|-..+.+.+++.|++.
T Consensus 71 ~~~~~ipv~~I~~~------------~Y~~~~~~~~~~~~~~~~~ 103 (104)
T PRK09590 71 GAKVGKPVVQIPPQ------------AYIPIPMGIEKMAKLILEN 103 (104)
T ss_pred hhhcCCCEEEeCHH------------HcCCCccCHHHHHHHHHhc
Confidence 2336788888873 3445567888888888764
No 153
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=78.81 E-value=50 Score=29.79 Aligned_cols=172 Identities=10% Similarity=0.085 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+...++++|++++.++... +.+...+.+. .-.+.|++|+.+..... .+.+... ..+++.+|...
T Consensus 80 ~i~~~~~~~gy~~~i~~~~~-----~~~~~~~~~~~l~~~~vdGvIi~~~~~~~--~~~l~~~---~~p~V~i~~~~--- 146 (311)
T TIGR02405 80 GMLPVFYTAGYDPIIMESQF-----SPQLTNEHLSVLQKRNVDGVILFGFTGCD--EEILESW---NHKAVVIARDT--- 146 (311)
T ss_pred HHHHHHHHCCCeEEEecCCC-----ChHHHHHHHHHHHhcCCCEEEEeCCCCCC--HHHHHhc---CCCEEEEecCC---
Confidence 45667788899987654221 2121122222 22468999987532111 0122222 35788888532
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc-c-------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. ++.. +..+. ..+..+++.|.+.. -++|.++.+.. . ..-+.+.+++.|.... ..+ .
T Consensus 147 ---~------~~~~-V~~D~~~~~~~a~~~L~~~G--hr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~--~~~-~ 211 (311)
T TIGR02405 147 ---G------GFSS-VCYDDYGAIELLMANLYQQG--HRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEPI--YQT-G 211 (311)
T ss_pred ---C------CccE-EEeCcHHHHHHHHHHHHHcC--CCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCce--eee-C
Confidence 1 2322 22232 23455666666653 36799887532 1 1346778888887631 111 1
Q ss_pred ecCCCCcHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
........+..+. + .++++|+..+-..+- .+++.+.+....++.++.++..
T Consensus 212 ~~~~~~~~~~~~~~l~~~~tAi~~~~D~~A~-g~~~~l~~~g~~dvsvvgfd~~ 264 (311)
T TIGR02405 212 QLSHESGYVLTDKVLKPETTALVCATDTLAL-GAAKYLQELDRSDVQVSSVGNT 264 (311)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECCcHHHH-HHHHHHHHcCCCCeEEEeeCCc
Confidence 1100111112222 2 357899988888888 7778777654446777777765
No 154
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=78.73 E-value=10 Score=36.03 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=120.1
Q ss_pred CCCCeEEEe--C-CC-CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022128 48 NSNPKVVVT--R-ER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 48 l~g~~Ilit--R-~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~ 123 (302)
...++|-+. . .. .+..++.+.|++.|+++..++.-.. ..+++. ++.+.+.-+..++.+...+.+.+++
T Consensus 142 ~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~----t~~e~~----~~~~A~lniv~~~~~~~~~a~~L~e 213 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGT----TLEEIR----KAPEAALNIVLCPEGGPYAAEWLEE 213 (398)
T ss_dssp TSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTB----CHHHHH----HGGGSSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCC----CHHHHH----hCCcCcEEEEeccchhhHHHHHHHH
Confidence 334455554 2 22 4678899999999997765542221 233333 5667788888899877767777766
Q ss_pred c-CCCCce-EEEECh-hhHHHHHHHhhccCCCCceeccCCCc--cHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHH
Q 022128 124 A-GTPNVR-IGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEG 196 (302)
Q Consensus 124 ~-~~~~~~-i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~ 196 (302)
. +.+-+. -.-+|- .|.+.+++....- |.. ..+... .-+...+.+.+.. ..|+++++..+....-.|...
T Consensus 214 ~~giP~~~~~~p~G~~~t~~~l~~i~~~l--g~~--~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~~~ 289 (398)
T PF00148_consen 214 RFGIPYLYFPSPYGIEGTDAWLRAIAEAL--GKP--IAEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGLARF 289 (398)
T ss_dssp HHT-EEEEEC-SBSHHHHHHHHHHHHHHH--THH--HHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHHHHH
T ss_pred HhCCCeeeccccccHHHHHHHHHHHHHHh--CCc--hhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHHHHH
Confidence 3 433222 123443 3445554441100 311 111100 0111222222211 147899988877667789999
Q ss_pred HHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCC-CEEEEE-CcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHc--
Q 022128 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI-PVVAVA-SPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRL-- 272 (302)
Q Consensus 197 L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~-d~ivft-S~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~-- 272 (302)
|.+.|+++..+.++....... +++...+... +.|+++ +...++ ..++.. +..++.-+......+++.
T Consensus 290 L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~------~pdl~ig~~~~~~~a~~~~~ 360 (398)
T PF00148_consen 290 LEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIE-ELLEEL------KPDLLIGSSHERYLAKKLGI 360 (398)
T ss_dssp HHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHH-HHHHHH------T-SEEEESHHHHHHHHHTT-
T ss_pred HHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHH-HHHHhc------CCCEEEechhhHHHHHHhCC
Confidence 999999998887776543322 2222222232 355554 555555 333322 234666677766777778
Q ss_pred -----CCCeEEec-----CCCChHHHHHHHHHHHH
Q 022128 273 -----GLKNVYYP-----THPGLEGWVDSILEALR 297 (302)
Q Consensus 273 -----G~~~~~v~-----~~~~~~~ll~~i~~~~~ 297 (302)
|+...... .-...++.+..+++..+
T Consensus 361 ~~~~~~~P~~~~~~~~~~~~~Gy~G~~~l~e~i~~ 395 (398)
T PF00148_consen 361 PLIRIGFPVFDRISLTYRPYMGYEGALNLLEEIAN 395 (398)
T ss_dssp -EEE-SSSEEESSSGGGS-SSHHHHHHHHHHHHHH
T ss_pred CeEEEeCCeeeeecCCCCCcEeHHHHHHHHHHHHH
Confidence 55532111 22345677766665543
No 155
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.69 E-value=44 Score=29.12 Aligned_cols=174 Identities=11% Similarity=0.052 Sum_probs=89.9
Q ss_pred HHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+.+.+++ .|+.++.... +.....+.+ .-.+.|+||+++.+. ...+.+.+ .+++++.+|.....
T Consensus 19 gi~~~~~~~~g~~~~~~~~-------~~~~~~~~l-~~~~vdGiI~~~~~~--~~~~~l~~---~~~PvV~~~~~~~~-- 83 (265)
T cd01543 19 GIARYAREHGPWSIYLEPR-------GLQEPLRWL-KDWQGDGIIARIDDP--EMAEALQK---LGIPVVDVSGSREK-- 83 (265)
T ss_pred HHHHHHHhcCCeEEEEecc-------cchhhhhhc-cccccceEEEECCCH--HHHHHHhh---CCCCEEEEeCccCC--
Confidence 44566777 6777765432 111121223 225689999875321 12233333 36789999865321
Q ss_pred HHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
. ++.. +..+. ..+..+++.|.+. ..++++++.+.... .-+.+.+++.|..+..+..+.....
T Consensus 84 --~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 152 (265)
T cd01543 84 --P------GIPR-VTTDNAAIGRMAAEHFLER--GFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDA 152 (265)
T ss_pred --C------CCCE-EeeCHHHHHHHHHHHHHHC--CCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCcccccc
Confidence 1 2221 12222 2344455556544 34688888665432 3456677888866522211111100
Q ss_pred -C-CCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 216 -H-HVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 216 -~-~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
. ....+.... + ..+++|+.+|...+. .+++.+.+... .++.+++++..
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 153 QSWEEEQEELAQWLQSLPKPVGIFACTDARAR-QLLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred ccHHHHHHHHHHHHhcCCCCcEEEecChHHHH-HHHHHHHHhCCCCCCceEEEeeCCc
Confidence 0 011112222 2 257899999888888 77777766432 35677777754
No 156
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=78.51 E-value=18 Score=31.97 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..+.+.+++.|++++.+... .+......+...+ ..+.|+||+.+.. .....++.+.+ .++++++++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~--~~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 88 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVP--DGEKVLSAIDNLG--AQGAKGFVICVPDVKLGPAIVAKAKA---YNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHcCCEEEEccCC--CHHHHHHHHHHHH--HcCCCEEEEccCchhhhHHHHHHHHh---CCCeEEEecCC
Confidence 34567788899998755332 1100111222222 2568999998753 23444444444 46889988754
No 157
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=78.38 E-value=3.6 Score=37.14 Aligned_cols=142 Identities=21% Similarity=0.287 Sum_probs=80.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEe-----------ChHHHHHHHHHHHHcCC---
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIIT-----------SPEAGSVFLEAWKEAGT--- 126 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IifT-----------S~~av~~f~~~l~~~~~--- 126 (302)
..+..+.|.+.|++=+.+..+.+.|...++.+.+.++.. ..++-|.+. |..-++.+.+.+.+.-.
T Consensus 60 ~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~ 139 (262)
T PF06180_consen 60 PEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKR 139 (262)
T ss_dssp HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccC
Confidence 345667788999999999999998876666666665432 356766655 45566777777765322
Q ss_pred CCceEEEEChhhH-------HHHHHHhhccCCCCceeccC---CCccHHHHHHhcccCCCC---CCEEEEeCCCcchhhH
Q 022128 127 PNVRIGVVGAGTA-------SIFEEVIQSSKCSLDVAFSP---SKATGKILASELPKNGKK---KCTVLYPASAKASNEI 193 (302)
Q Consensus 127 ~~~~i~aVG~~Ta-------~~l~~~~~~~~~G~~~~~~p---~~~~~e~L~~~L~~~~~~---~~~vL~~rg~~~~~~L 193 (302)
++-.++-+|.+|. ..|+..++. .|.+..++. ..++-+.+++.|.+...+ =.+++++.|++..+++
T Consensus 140 ~~~a~vlmGHGt~h~an~~Y~~l~~~l~~--~~~~~v~vgtvEG~P~~~~vi~~L~~~g~k~V~L~PlMlVAGdHa~nDm 217 (262)
T PF06180_consen 140 KDEAVVLMGHGTPHPANAAYSALQAMLKK--HGYPNVFVGTVEGYPSLEDVIARLKKKGIKKVHLIPLMLVAGDHAKNDM 217 (262)
T ss_dssp TTEEEEEEE---SCHHHHHHHHHHHHHHC--CT-TTEEEEETTSSSBHHHHHHHHHHHT-SEEEEEEESSS--HHHHCCC
T ss_pred CCCEEEEEeCCCCCCccHHHHHHHHHHHh--CCCCeEEEEEeCCCCCHHHHHHHHHhcCCCeEEEEecccccchhhhhhh
Confidence 4677888998875 333333322 243322322 235678887888764321 1123445777665554
Q ss_pred --------HHHHHhCCCeeE
Q 022128 194 --------EEGLSNRGFEVV 205 (302)
Q Consensus 194 --------~~~L~~~G~~v~ 205 (302)
...|++.|+.|+
T Consensus 218 aGde~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 218 AGDEEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp CSSSTTSHHHHHHHTT-EEE
T ss_pred cCCCcchHHHHHHHCCCEEE
Confidence 788999998773
No 158
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=77.86 E-value=63 Score=30.45 Aligned_cols=218 Identities=17% Similarity=0.103 Sum_probs=112.9
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEECh-hh
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-GT 138 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~~i~aVG~-~T 138 (302)
+..++.+.|++.|+++..++.... ..+++ +++.+.+..+..++..-..+.+.+++. +.+-+...-+|. .|
T Consensus 167 d~~el~~ll~~~G~~v~~~~~~~~----s~~~i----~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t 238 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGT----TVEEL----RELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEAT 238 (399)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCC----CHHHH----HhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHH
Confidence 568999999999999998876622 22333 356777888888885556567777654 444333334563 45
Q ss_pred HHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccC--CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.+.+++..+. -|... -++.... -+.+.+.+... ...|+++++..+....-.+...|.+.|.+|..+..+....
T Consensus 239 ~~~l~~i~~~--~g~~~-~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~~~ 315 (399)
T cd00316 239 DAFLRKLAEL--FGIEK-EVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFGHK 315 (399)
T ss_pred HHHHHHHHHH--hCCCc-chHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCCCH
Confidence 5555554210 04211 1111100 01122222221 1257888877665555667889999999887665543322
Q ss_pred CCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecC------CCChHHH
Q 022128 215 VHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT------HPGLEGW 288 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~------~~~~~~l 288 (302)
.. .+. ...+......++......+ +.+.+.+. +..++.-+......+++.|+..+.+.. ....++.
T Consensus 316 ~~--~~~-~~~~~~~~~~~~~~~d~~~--~~~~~~~~---~pdl~ig~~~~~~~~~~~~ip~~~~~~p~~~~~~~Gy~G~ 387 (399)
T cd00316 316 AD--YER-REELLGEGTEVVDDGDLEE--LEELIREL---KPDLIIGGSKGRYIAKKLGIPLVRIGFPIHRRPYVGYEGA 387 (399)
T ss_pred HH--HHH-HHHhcCCCCEEEeCCCHHH--HHHHHhhc---CCCEEEECCcHHHHHHHhCCCEEEcCCccccCCccchhhH
Confidence 21 111 1122222323333322222 22333332 233544455566667777877542221 1355666
Q ss_pred HHHHHHHHH
Q 022128 289 VDSILEALR 297 (302)
Q Consensus 289 l~~i~~~~~ 297 (302)
+..+.+..+
T Consensus 388 ~~l~~~i~~ 396 (399)
T cd00316 388 LNLAEEIAN 396 (399)
T ss_pred HHHHHHHHH
Confidence 666665544
No 159
>PRK08339 short chain dehydrogenase; Provisional
Probab=77.60 E-value=46 Score=29.38 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.8
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccE--EE--EeChHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDW--II--ITSPEAGSVFLEAW 121 (302)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~--Ii--fTS~~av~~f~~~l 121 (302)
.+.|+++|||-... -...+++.|.+.|++++.+- ......+.+.+.+......+. +. +++..+++.+++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLS----RNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe----CCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 46799999998653 46779999999999876431 110111223333322112222 21 48888999888877
Q ss_pred HHcC
Q 022128 122 KEAG 125 (302)
Q Consensus 122 ~~~~ 125 (302)
.+.+
T Consensus 81 ~~~g 84 (263)
T PRK08339 81 KNIG 84 (263)
T ss_pred HhhC
Confidence 5433
No 160
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=77.24 E-value=51 Score=29.10 Aligned_cols=198 Identities=11% Similarity=0.066 Sum_probs=92.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~-~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
..+.+.++++|++++..+...-.. .+.+...+.++. -.+.|+||++.. .+....++.+.+. +.+++.+...+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~---~~p~V~i~~~~~ 95 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPG-IDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS---GKTKIILQNITT 95 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcc-cCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC---CCCeEEEeCCCC
Confidence 345677888999888654432110 111111222222 257999999753 3233333434332 334444532211
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhC-CCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~-G~~v~~~~vY~ 211 (302)
. .+... +..+... +.... ..++.+++.|.+.....++|.++.+... ..-+.+.++++ |..+. .++.
T Consensus 96 ~-~~~~~--~~~~~~~-V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~--~~~~ 169 (280)
T cd06303 96 P-VKAWL--KHQPLLY-VGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARNNWTLT--SEFY 169 (280)
T ss_pred C-ccccc--cCCCceE-eCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHHHHHHhCCCceEE--Eeec
Confidence 0 00000 0001111 12222 2345555666552223468888876432 13455667776 55432 1222
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHHH--HHHHH
Q 022128 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETTA--SAAKR 271 (302)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~Ta--~~l~~ 271 (302)
.........+.... + .++++|+.++-..+- ..++.+++... .++.++.++..-. ..+.+
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~l~al~~~G~~~dv~vvg~d~~~~~~~~~~~ 235 (280)
T cd06303 170 TDATRQKAYQATSDILSNNPDVDFIYACSTDIAL-GASDALKELGREDDILINGWGGGSAELDAIQQ 235 (280)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCcEEEecCCCHHHHHHHHc
Confidence 11111111112222 2 357899998888887 67777766532 3567777765332 44443
No 161
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=76.25 E-value=4.8 Score=32.48 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-----------CchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHH--
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP-----------DTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWK-- 122 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-----------~~~~l~~~l~~l~~~d~IifTS~-------~av~~f~~~l~-- 122 (302)
+.+.+.+++.|+++..+.+-+. +.+ ..+.+.+..+.+...|.|||-|| ..++.|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~ 99 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCW 99 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHT
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccc
Confidence 4455666777888888776664 111 12345555556678999999997 46788888876
Q ss_pred -HcCCCCceEEEE
Q 022128 123 -EAGTPNVRIGVV 134 (302)
Q Consensus 123 -~~~~~~~~i~aV 134 (302)
...+.+.+++.+
T Consensus 100 ~~~~~~~K~~~~i 112 (152)
T PF03358_consen 100 FRRALRGKPVAII 112 (152)
T ss_dssp HTTTTTTSEEEEE
T ss_pred cccccCCCEEEEE
Confidence 333456666555
No 162
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=76.24 E-value=13 Score=30.87 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=33.6
Q ss_pred HHHHHHhCCCeeEEEeeeeeec--------CCCCcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhhc
Q 022128 193 IEEGLSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLISD 250 (302)
Q Consensus 193 L~~~L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~~ 250 (302)
+.+.|.+.|.+++.+.+|+-.. .+.....+.+.+...|.|+|.|| ..++ +|++.+..
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK-~~iD~~~~ 93 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLK-ALLDLLPQ 93 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHH-HHHHhCCh
Confidence 3445555666666665554211 01111233444568899999998 6778 88888753
No 163
>PRK10537 voltage-gated potassium channel; Provisional
Probab=75.33 E-value=28 Score=33.34 Aligned_cols=112 Identities=14% Similarity=0.103 Sum_probs=61.9
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeeee----------eecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHH
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT----------TEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVN 246 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~----------~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~ 246 (302)
.++++.....-...+.+.|++.|.++.-+.--+ ...-+...++.+++. ++.++++.++++..+ +..-
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~-Nl~i 319 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDAD-NAFV 319 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHH-HHHH
Confidence 346655555555566667777666554332100 000011223344443 578889988887776 5543
Q ss_pred hhhc-ccCCCceEE--EECHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022128 247 LISD-TEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 291 (302)
Q Consensus 247 ~l~~-~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~ 291 (302)
.+.- ....+.+++ +-.+.-.+.+++.|.+.++.|..-..+.|.+.
T Consensus 320 vL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~ 367 (393)
T PRK10537 320 VLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLART 367 (393)
T ss_pred HHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHH
Confidence 3221 111234444 55888899999999998766554444444443
No 164
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=75.31 E-value=32 Score=33.07 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeee--------------ecCCCCcHHHHHH--cCCCCEEEEECcHHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT--------------EPVHHVDQTVLKQ--ALSIPVVAVASPSAV 240 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~--------------~~~~~~~~~~~~~--~~~~d~ivftS~s~v 240 (302)
..++++++.+..-...+.+.|.+.|.+|.-+..-.. ..-+....+.++. +.+.++++.++++.-
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 457899888877778899999999988755522110 0001111223333 257888888777644
Q ss_pred HHHHHH-hh-hcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHH
Q 022128 241 RSSWVN-LI-SDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 290 (302)
Q Consensus 241 ~~~~~~-~l-~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~ 290 (302)
. +..- .+ ++.....+.+.+-.+.-...++.+|...++.+..-....+++
T Consensus 310 ~-n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~ 360 (453)
T PRK09496 310 A-NILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPRQATASEILR 360 (453)
T ss_pred H-HHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHH
Confidence 4 4332 22 222111223334566667888899988765444433333333
No 165
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=74.86 E-value=20 Score=37.24 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=63.7
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+.+...+.|...|++|..-..+ ...++..+.. .+.|+|++.|.. .+. .+.+.+++....++++++=
T Consensus 598 ra~fv~~~l~~~GfeV~~~~~~------~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~-~l~~~Lk~~G~~~v~vl~G 670 (714)
T PRK09426 598 GAKVIATAFADLGFDVDIGPLF------QTPEEAARQAVENDVHVVGVSSLAAGHKTLVP-ALIEALKKLGREDIMVVVG 670 (714)
T ss_pred hHHHHHHHHHhCCeeEecCCCC------CCHHHHHHHHHHcCCCEEEEeccchhhHHHHH-HHHHHHHhcCCCCcEEEEe
Confidence 3467788999999888322222 1222333332 588999998866 334 4455555433223455543
Q ss_pred C---HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 262 G---ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 262 G---~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
| +...+.+++.|+..++ ....+..++++.+.+.+.
T Consensus 671 G~~~~~~~~~l~~aGvD~~i-~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 671 GVIPPQDYDFLYEAGVAAIF-GPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCChhhHHHHHhCCCCEEE-CCCCCHHHHHHHHHHHHH
Confidence 3 4455689999998754 566699999999988874
No 166
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=74.83 E-value=18 Score=33.29 Aligned_cols=154 Identities=17% Similarity=0.086 Sum_probs=80.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+..++.|+++..+-+-+.. ..+++.+. ++.....|+|++--|---+.-.+.+.+.-.+..-+=.+.+.-...|
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l 137 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKL 137 (299)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhH
Confidence 34567779887665553222 22334433 4344678899998773211111112111111112222222222222
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~ 219 (302)
-.- |....+.| -|+.+.++.|..+. ..|++++++ |+.....-|...|.++|+.|+.+.-.. ...
T Consensus 138 ~~~------~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T-----~nl 204 (299)
T PLN02516 138 AMK------GREPLFLP--CTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT-----PDP 204 (299)
T ss_pred hcC------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-----CCH
Confidence 110 11222443 45777777776543 268888777 778778889999999999987775432 112
Q ss_pred HHHHHHcCCCCEEEEECcH
Q 022128 220 QTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 220 ~~~~~~~~~~d~ivftS~s 238 (302)
.+. ..+.|+|+..-+.
T Consensus 205 ~~~---~~~ADIvv~AvGk 220 (299)
T PLN02516 205 ESI---VREADIVIAAAGQ 220 (299)
T ss_pred HHH---HhhCCEEEEcCCC
Confidence 222 3466877766544
No 167
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=74.74 E-value=36 Score=28.40 Aligned_cols=126 Identities=10% Similarity=0.089 Sum_probs=71.7
Q ss_pred EEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC-CCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEe
Q 022128 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK-KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 131 i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~-~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~ 208 (302)
+++=|.....+++.. |.++ |...++-+|...+..... ++.+|-++.|... .+.+.+.|++..-.+.-+-
T Consensus 9 v~~DG~~i~~~~~~~------g~~~---~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg 79 (172)
T PF03808_consen 9 VLPDGMPIVWAARLL------GRPL---PERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG 79 (172)
T ss_pred EecCCHHHHHHHHHc------CCCC---CcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 566677777777776 7653 456667677666654333 5678888887655 4677888888733332222
Q ss_pred eeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHH
Q 022128 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTA 266 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta 266 (302)
.|.-.-.+.+.+++.+.+ .++|+|++.-+.==++.|+...... .....++|+|...-
T Consensus 80 ~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~-l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 80 YHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQR-LPAGVIIGVGGAFD 138 (172)
T ss_pred ecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-CCCCEEEEECchhh
Confidence 222211222233344443 5788776665554443455555442 22346888987543
No 168
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.73 E-value=32 Score=34.39 Aligned_cols=109 Identities=10% Similarity=0.068 Sum_probs=60.9
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeee------------eeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHH-
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTY------------TTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSS- 243 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY------------~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~- 243 (302)
.++++.....-...+.+.|+++|.+|.-++-= ....-+...++.++++ ++.|.++.+.++..+ +
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~-~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYE-AG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHH-HH
Confidence 45677766666667888888888776544321 1111111223344433 578888877665444 3
Q ss_pred -HHHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEecCCCChHHHH
Q 022128 244 -WVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWV 289 (302)
Q Consensus 244 -~~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll 289 (302)
......+. ..+.+++ +-.+...+.+++.|.+.++.|+.-..+.+.
T Consensus 497 ~iv~~~~~~-~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~ 544 (558)
T PRK10669 497 EIVASAREK-RPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTML 544 (558)
T ss_pred HHHHHHHHH-CCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHH
Confidence 22223222 1234444 447777788999999987755543333333
No 169
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=74.70 E-value=37 Score=30.45 Aligned_cols=185 Identities=12% Similarity=0.076 Sum_probs=86.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|++++....-.. .+.+...+.++. -.++|+||+.+.. ++...+..+ . .+++++.++.....
T Consensus 21 i~~~a~~~g~~v~~~~~~~~---~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~---~~iPvV~~~~~~~~ 93 (295)
T TIGR02955 21 MVEQAKHLGVELKVLEAGGY---PNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-T---KSIPVFALVNQIDS 93 (295)
T ss_pred HHHHHHHhCCEEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-h---cCCCEEEEecCCCc
Confidence 44566778998876543110 111111122222 2679999998642 222222222 1 36788877443211
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCC---CCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~---~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~v 209 (302)
. . .+ ..+..+. ..+..+++.|.+... ..++|+++.|.... .-+.+.|++.|+.+.. ..
T Consensus 94 ~---~------~~-~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~ 162 (295)
T TIGR02955 94 N---Q------VK-GRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVEISA-IL 162 (295)
T ss_pred c---c------ee-EEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcEEEE-Ee
Confidence 1 0 11 1111121 223444444444211 13579999776532 2456677888876543 11
Q ss_pred eeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhccc-CCCceEEE--ECHHHHHHHHHcCC
Q 022128 210 YTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTE-QWSNSVAC--IGETTASAAKRLGL 274 (302)
Q Consensus 210 Y~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~-~~~~~i~~--IG~~Ta~~l~~~G~ 274 (302)
+ .....+ +..+. + ..+|+| +.+-..+. ..++.+.+.. ..++.+++ .+|.....+++ |.
T Consensus 163 ~----~~~~~~~~~~~~~~~L~~~~~~d~i-~~~d~~a~-g~l~al~~~g~~~dv~vvg~~~~p~~~~~l~~-g~ 230 (295)
T TIGR02955 163 W----ADNDKELQRNLLQDLLKKHPDIDYL-VGSAVAAE-AAISELRSLHMTQQIKLVSTYLSHGVYRGLKR-GK 230 (295)
T ss_pred c----CCCcHHHHHHHHHHHHHhCCCcCEE-EeccHHHH-HHHHHHHhhCccCCeEEEEecCCHHHHHHHHc-Cc
Confidence 1 111111 12222 2 357876 55655555 5555554432 22344544 35666666664 44
No 170
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=73.98 E-value=91 Score=30.38 Aligned_cols=221 Identities=14% Similarity=0.111 Sum_probs=108.7
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-h
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG-~ 136 (302)
..+..++.+.|++.|+++... +......+++ ....+...-+..++.....+.+.|++ .|.+-+...-+| .
T Consensus 209 ~~d~~el~~lL~~~Gl~v~~~----~~~~~s~eei----~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~ 280 (456)
T TIGR01283 209 AGEFWHVKPLLEKLGIRVLAT----ITGDSRYAEV----QTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIE 280 (456)
T ss_pred cccHHHHHHHHHHcCCeEEEE----eCCCCcHHHH----HhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHH
Confidence 345668999999999999862 1111122333 24566666666666555666777754 354322221255 3
Q ss_pred hhHHHHHHHhhccCCCCce--eccCCCc--cHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeee
Q 022128 137 GTASIFEEVIQSSKCSLDV--AFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~--~~~p~~~--~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (302)
.|.+.|++.... -|..- ..++... .-+.+.+.|..+. ..|+++.+..+....-.+...|.+.|++|..+.++
T Consensus 281 ~T~~~L~~Ia~~--lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~ 358 (456)
T TIGR01283 281 DTSKALRDIADL--FGDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQ 358 (456)
T ss_pred HHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeee
Confidence 466666665110 03110 0011100 0111222332221 15788877655544456888999999998665433
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEec-----CCCCh
Q 022128 211 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP-----THPGL 285 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~-----~~~~~ 285 (302)
... .. ..+.+......+.+++..+...+ +.+.+.+. +..++.-|......+.++|+..+.+. .....
T Consensus 359 ~~~--~~-d~~~l~~~~~~~~~v~~~~d~~e--~~~~i~~~---~pDl~ig~~~~~~~a~k~giP~i~~~~~~~~p~~Gy 430 (456)
T TIGR01283 359 KGT--EE-DYARIRELMGEGTVMLDDANPRE--LLKLLLEY---KADLLIAGGKERYTALKLGIPFCDINHEREHPYAGY 430 (456)
T ss_pred cCC--HH-HHHHHHHHcCCCeEEEeCCCHHH--HHHHHhhc---CCCEEEEccchHHHHHhcCCCEEEcccccCCCCcch
Confidence 221 11 11122222233556666543322 33444332 12233233444455567888754332 12355
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
++.+..+.+..+
T Consensus 431 ~G~~~l~~~i~~ 442 (456)
T TIGR01283 431 DGMVEFAREVDL 442 (456)
T ss_pred hhHHHHHHHHHH
Confidence 666666555543
No 171
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=73.67 E-value=73 Score=29.11 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=110.0
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEec----eEE---eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELP----LIQ---HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P----~~~---~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~ 123 (302)
..|-..-+--.+....+.|+++|+.++.-. --. +...--..+..+.+.+ .++..|=-|-|---+. .+...+
T Consensus 29 ~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~~~~~~g~~ViirAHGv~~~~~~~l~~-~g~~viDaTCP~V~k~-~~~v~~ 106 (281)
T PF02401_consen 29 GPVYTLGPIIHNPQVVERLEKRGVKVVDDIDEVPEGDTVIIRAHGVPPEVYEELKE-RGLEVIDATCPFVKKI-HKIVRK 106 (281)
T ss_dssp S-EEECS-SSS-HHHHHHHHHCTEEEESSGCGS-TTEEEEE-TT---HHHHHHHHH-TTEEEEE---HHHHHH-HHHHHH
T ss_pred CCEEEecCcccCHHHHHHHHHCCCEEecCccccCCCCEEEEeCCCCCHHHHHHHHH-cCCEEEECCChhHHHH-HHHHHH
Confidence 467777777789999999999998876431 000 0000001122222211 2233333344432221 222222
Q ss_pred cCCCCceEEEEChhhHHHHHHHhhccCCCCce----eccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc----hhhHHH
Q 022128 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV----AFSPSKATGKILASELPKNGKKKCTVLYPASAKA----SNEIEE 195 (302)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~----~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~----~~~L~~ 195 (302)
....+-.++.+|.+.....+-.. |+-. .++ .+.+.+ +.|+.. ..+++.++.--.- -..+.+
T Consensus 107 ~~~~Gy~iviiG~~~HpEv~gi~-----g~~~~~~~~vv---~~~~~~-~~l~~~--~~~kv~vvsQTT~~~~~~~~i~~ 175 (281)
T PF02401_consen 107 YAKEGYQIVIIGDKNHPEVIGIL-----GYAPEEKAIVV---ESPEDV-EKLPIS--DPKKVAVVSQTTQSVEKFEEIVE 175 (281)
T ss_dssp HHHCT-EEEEES-TT-HHHHHHH-----CCHHTS-EEEE---SSHHHH-HHGGGS--STTCEEEEE-TTS-HHHHHHHHH
T ss_pred HHhcCCEEEEECCCCCceEEEec-----ccccCCceEEe---CChhhh-cccCCC--CCCeEEEEEeecccHHHHHHHHH
Confidence 22247789999999998888775 4432 222 234444 445432 2357777654333 236778
Q ss_pred HHHhCCCeeEEEeeeeeecCCCCcH--HHHHHcCCCCEEEEE----CcHHHHHHHHHhhhcccCCCceEEEECHH---HH
Q 022128 196 GLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVA----SPSAVRSSWVNLISDTEQWSNSVACIGET---TA 266 (302)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~ivft----S~s~v~~~~~~~l~~~~~~~~~i~~IG~~---Ta 266 (302)
.|++..-++ +..+|.+.+..-... ++.+.....|++++- |+++ + .+++..++. ..+.+-|... ..
T Consensus 176 ~l~~~~~~~-~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~SsNT-~-kL~eia~~~---~~~t~~Ie~~~el~~ 249 (281)
T PF02401_consen 176 ALKKRFPEL-EGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSSNT-R-KLAEIAKEH---GKPTYHIETADELDP 249 (281)
T ss_dssp HHHHHSTCE-E-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-HHH-H-HHHHHHHHC---TTCEEEESSGGG--H
T ss_pred HHHHhCccc-cCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCccH-H-HHHHHHHHh---CCCEEEeCCccccCH
Confidence 888775443 234777776543221 122223789987663 4333 3 466666653 2234444322 22
Q ss_pred HHHHHcCCCeE-EecCCCChHHHHHHHHHHHHc
Q 022128 267 SAAKRLGLKNV-YYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 267 ~~l~~~G~~~~-~v~~~~~~~~ll~~i~~~~~~ 298 (302)
..++ |.+.+ +.+.-.+++.+++.+.+++++
T Consensus 250 ~~l~--~~~~VGItaGASTP~~ii~eVi~~l~~ 280 (281)
T PF02401_consen 250 EWLK--GVKKVGITAGASTPDWIIEEVIDRLEE 280 (281)
T ss_dssp HHHT--T-SEEEEEE-TTS-HHHHHHHHHHHHH
T ss_pred hHhC--CCCEEEEEccCCCCHHHHHHHHHHHhc
Confidence 2233 44444 567889999999999988864
No 172
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=73.30 E-value=16 Score=31.26 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeC------CCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQG------PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~------~~~~~l~~~l~~l~~~d~IifTS~-------~av~~f~~~l 121 (302)
...+.+++.|+++..+.+.+..+. ...+.+.+..+.+...|.|||-|| -.++.|+..+
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l 92 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLL 92 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC
Confidence 344556668999988776653221 011245555556678999999998 3455566544
No 173
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=72.17 E-value=93 Score=29.67 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=111.7
Q ss_pred CeEEEeC--CCCChHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCC
Q 022128 51 PKVVVTR--ERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGT 126 (302)
Q Consensus 51 ~~IlitR--~~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~ 126 (302)
.+|.+.- +..+..++...|++.|+++. .+|- .+.+++ ........++..++.+. ...+.+++ .+.
T Consensus 156 ~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d------~~~~~~----~~~~~a~~~~~~~~~~~-~~A~~Le~r~gi 224 (396)
T cd01979 156 RSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP------RRYTDL----PVIGPGTYVLGIQPFLS-RTATTLMRRRKC 224 (396)
T ss_pred CceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC------CChHHh----hccCcceEEEEeChhHH-HHHHHHHHhcCC
Confidence 3444433 33456889999999999997 3331 122322 24445555565666543 34555554 344
Q ss_pred CCceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCC
Q 022128 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGF 202 (302)
Q Consensus 127 ~~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~ 202 (302)
+.+.+ +-+|. .|.+.|++....- |....... .....+.+.+.... ..|+|+.+..+..-.-.+...|.+.|+
T Consensus 225 P~~~~~~P~G~~~t~~~l~~la~~~--g~~~~~i~--~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elGm 300 (396)
T cd01979 225 KLLSAPFPIGPDGTRAWLEAICSAF--GIFPSVLA--EREARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCGM 300 (396)
T ss_pred CcccCCcCcChHHHHHHHHHHHHHh--CCChhHHH--HHHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCCC
Confidence 33332 22553 4556665542100 32111110 11122333443322 168899887666556788999999999
Q ss_pred eeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe-EEe--
Q 022128 203 EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN-VYY-- 279 (302)
Q Consensus 203 ~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~-~~v-- 279 (302)
+|..+-. .. ......+...+.+. .+..+..... .. .+.+.+.+. +..++.-|...+..+.+.|+.. +.+
T Consensus 301 ~vv~~~t-~~-~~~~~~~~~~~~l~-~~~~v~~~~d-~~-~l~~~i~~~---~pDlli~~~~~a~pl~r~G~P~~dr~~~ 372 (396)
T cd01979 301 IVVEVGT-PY-LDKRFQAAELELLP-PMVRIVEKPD-NY-RQLDRIREL---RPDLVVTGLGLANPLEARGITTKWSIEF 372 (396)
T ss_pred EEEeeCC-Cc-CChHHHHHHHHhcC-CCCeEEECCC-HH-HHHHHHHhc---CCCEEEecccccCcHHhCCCcceeecce
Confidence 9866522 11 11111122222232 3554544333 33 344444442 2234444677777899999973 111
Q ss_pred --cCCCChHHHHHHHHHHHH
Q 022128 280 --PTHPGLEGWVDSILEALR 297 (302)
Q Consensus 280 --~~~~~~~~ll~~i~~~~~ 297 (302)
.......+....+....+
T Consensus 373 ~~~~~~Gy~g~~~l~~~~~~ 392 (396)
T cd01979 373 TFAQIHGFTNARDLAELFTR 392 (396)
T ss_pred eeeccccHhhHHHHHHHhhc
Confidence 123444555555554443
No 174
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=72.15 E-value=44 Score=29.27 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=81.3
Q ss_pred EEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeee
Q 022128 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 131 i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (302)
-.++|-+|.+++.++ +++- . ..+.-++.+.+.... +-++|.++.. -......|++ .+.+|
T Consensus 80 e~tlGvAaiNAvsq~------~~dl--~--~~~~~Dil~li~~~d-~IkmI~~fg~---m~p~v~~l~e------k~~v~ 139 (250)
T COG2014 80 ERTLGVAAINAVSQY------YIDL--E--EANWFDILDLIQRDD-KIKMIAEFGN---MPPVVRTLKE------KFEVY 139 (250)
T ss_pred HHhhhHHHHHHHHHH------hhhH--H--hcchHHHHHHHcCCC-ceeEEEecCC---CChHHHHhhh------heEEE
Confidence 358899999999988 6643 1 234444544444321 2345655543 2334455653 35666
Q ss_pred eeecCCCCc-----HH-H-HHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHH---HHHHHcCCCeEEec
Q 022128 211 TTEPVHHVD-----QT-V-LKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTA---SAAKRLGLKNVYYP 280 (302)
Q Consensus 211 ~~~~~~~~~-----~~-~-~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta---~~l~~~G~~~~~v~ 280 (302)
.-+..+..+ .+ . .+.+...|+|+.+-+--+. .-++.+-.......-++.+||++- +.+.+.|+.++.--
T Consensus 140 ~~er~~~~pkr~t~~d~~e~~iLP~~Dvii~SaStlvN-~T~d~~Ld~ak~ak~vvl~GPTa~l~pe~f~~~gvt~iag~ 218 (250)
T COG2014 140 VFERNPKLPKRGTLSDTLEYQILPEVDVIIASASTLVN-GTLDMILDRAKKAKLVVLTGPTAQLLPEFFKGTGVTHIAGT 218 (250)
T ss_pred EeccCccCcccccccchhhhhhcccccEEEEechhhhc-CcHHHHHhhhccCcEEEEeCCCcccchhHHhccCcceEEee
Confidence 664443322 11 1 1224678887777665555 433333221111245667898765 45777888876555
Q ss_pred CCCChHHHHHHHHHH
Q 022128 281 THPGLEGWVDSILEA 295 (302)
Q Consensus 281 ~~~~~~~ll~~i~~~ 295 (302)
+--+++.++..++..
T Consensus 219 kIiDp~~~L~klk~~ 233 (250)
T COG2014 219 KIIDPDKALLKLKFA 233 (250)
T ss_pred eecCHHHHHHHhhhc
Confidence 667888888777665
No 175
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=72.00 E-value=95 Score=30.09 Aligned_cols=195 Identities=12% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-c
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-A 124 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~ 124 (302)
..+..++.+.|++.|+++..+|=+. ..+..+ ..+++ +.+..+...-+..++.+ ....+.|++ .
T Consensus 180 ~~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~ 256 (432)
T TIGR01285 180 PGDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGG-TTLEQ-IRQIGQSCCTLAIGESM-RRAASLLADRC 256 (432)
T ss_pred ccCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCC-CcHHH-HHhhccCcEEEEEChhH-HHHHHHHHHHH
Confidence 3567899999999999998877332 111111 12332 22445555555567765 556666764 3
Q ss_pred CCCCceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHH
Q 022128 125 GTPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLS 198 (302)
Q Consensus 125 ~~~~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~ 198 (302)
+.+-+.. .-+|- .|.+.+++..+- -|.+ +|.... -+-+.+.+.+.. ..|+|+.+..+....-.+...|.
T Consensus 257 giP~~~~~~p~G~~~t~~~l~~l~~~--~g~~---~~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~ 331 (432)
T TIGR01285 257 GVPYIVFPSLMGLEAVDAFLHVLMKI--SGRA---VPERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFT 331 (432)
T ss_pred CCCeEecCCCcChHHHHHHHHHHHHH--HCCC---ccHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHH
Confidence 4443332 23665 455556655210 1442 222111 112333443321 25889887776655578899999
Q ss_pred hCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022128 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
+.|++|..+.++...+. .+.+ ..+.++..-. . .+.+.+.+. +..++.-+..-...++++|+.-
T Consensus 332 elGm~v~~~~~~~~~~~-------~~~~-~~~~~~~~D~---~-~l~~~i~~~---~~dliig~s~~k~~A~~l~ip~ 394 (432)
T TIGR01285 332 SMGAQIVAAVTTTGSPL-------LQKL-PVETVVIGDL---E-DLEDLACAA---GADLLITNSHGRALAQRLALPL 394 (432)
T ss_pred HCCCEEEEEEeCCCCHH-------HHhC-CcCcEEeCCH---H-HHHHHHhhc---CCCEEEECcchHHHHHHcCCCE
Confidence 99999987777655221 1122 2233444333 3 333444332 2334434444556666677654
No 176
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=71.82 E-value=51 Score=31.49 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=85.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~ 130 (302)
|+|++....+ ...+.+++.| ++...|--.+ . .+ .+.++|.++..|..-+.. +.+ + . +++|
T Consensus 1 mkI~~d~~~p---~~~~~~~~~~-~v~~~~~~~~------~--~~---~l~daD~liv~~~t~v~~--~ll-~-~-~~Lk 60 (381)
T PRK00257 1 MKIVADENIP---LLDAFFAGFG-EIRRLPGRAF------D--RA---AVRDADVLLVRSVTRVDR--ALL-E-G-SRVR 60 (381)
T ss_pred CEEEEecCch---hHHHHHhhCC-cEEEcCCccc------C--HH---HhCCceEEEEeCCCCCCH--HHh-c-C-CCCe
Confidence 5778777653 2344555544 5554442111 0 11 356789888776533322 112 1 1 3566
Q ss_pred EEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cccC---CCCCCEEEEeCCCcchhhHHH
Q 022128 131 IGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPKN---GKKKCTVLYPASAKASNEIEE 195 (302)
Q Consensus 131 i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~~---~~~~~~vL~~rg~~~~~~L~~ 195 (302)
+++ .|.++ .+++++. |+.+.-.|. .++..+++. +.+. ...+++|.++.-..-...+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 61 FVGTCTIGTDHLDLDYFAEA------GITWSSAPG-CNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred EEEECCccccccCHHHHHHC------CCEEEECCC-cChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHH
Confidence 542 22222 3556677 998766653 344443332 1221 126889999976666667899
Q ss_pred HHHhCCCeeEEEeeeeeecCC-CCcHHHHHHcCCCCEEEEECcHH
Q 022128 196 GLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
.|+..|++|..+.-+...... .....+-+.+...|+|++.-|.+
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt 178 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLT 178 (381)
T ss_pred HHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCC
Confidence 999999887544332211100 00011112235789999988864
No 177
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=71.77 E-value=86 Score=29.16 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=88.1
Q ss_pred CeEEEeCCCC--C----hHHHHHHHHhCCCcEEEeceEEeeeCC-CchHHHHHHh--cCCCccEEEEeChHHHHHHHHHH
Q 022128 51 PKVVVTRERG--K----NGKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAW 121 (302)
Q Consensus 51 ~~IlitR~~~--~----~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l 121 (302)
.+|-|+..-+ . .+-..+.|++.|.. -+.|...-.. |...+.+..+ ..+..|.|+-++.-+.+....+.
T Consensus 31 ~~VaI~~~veHpaLd~~~~G~~~aLk~~G~~---n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq~~~s~~ 107 (322)
T COG2984 31 ITVAITQFVEHPALDAAREGVKEALKDAGYK---NVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQALVSAT 107 (322)
T ss_pred eeEEEEEeecchhHHHHHHHHHHHHHhcCcc---CeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHHHHHHhc
Confidence 3466665432 1 24466788999997 3334433222 2222332222 33567999988888888877654
Q ss_pred HHcCCCCceEEEEC---hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhh
Q 022128 122 KEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNE 192 (302)
Q Consensus 122 ~~~~~~~~~i~aVG---~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~ 192 (302)
. ++++++-| +-.++....+ .. -|-.+.-+.+....+.=++.+......-++|-++.+... -++
T Consensus 108 ~-----~iPVV~aavtd~v~a~Lv~~~-~~--pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~ee 179 (322)
T COG2984 108 K-----TIPVVFAAVTDPVGAKLVKSL-EQ--PGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEE 179 (322)
T ss_pred C-----CCCEEEEccCchhhccCCccc-cC--CCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHH
Confidence 3 34443222 2222222211 00 022222222222233333333333334467744433322 246
Q ss_pred HHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHH
Q 022128 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVR 241 (302)
Q Consensus 193 L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~ 241 (302)
|...++..|++|.+..+=.... .+...+.+ ++.|+|.+.--..+.
T Consensus 180 lk~~A~~~Gl~vve~~v~~~nd----i~~a~~~l~g~~d~i~~p~dn~i~ 225 (322)
T COG2984 180 LKKEARKAGLEVVEAAVTSVND----IPRAVQALLGKVDVIYIPTDNLIV 225 (322)
T ss_pred HHHHHHHCCCEEEEEecCcccc----cHHHHHHhcCCCcEEEEecchHHH
Confidence 6777788998886665533321 12223333 789998887666655
No 178
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=71.42 E-value=1e+02 Score=29.78 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=114.6
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEECh-
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA- 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG~- 136 (302)
..+..++.+.|++.|+++.... ......+++ .+..+..+-+..++.+...+.+.|++ .+.+-+..--+|-
T Consensus 184 ~~d~~el~~lL~~~Gi~v~~~~----~~~~t~eei----~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~ 255 (421)
T cd01976 184 GGDAWASRILLEEMGLRVVAQW----SGDGTLNEM----ENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPT 255 (421)
T ss_pred CccHHHHHHHHHHcCCeEEEEe----CCCCCHHHH----HhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHH
Confidence 3466889999999999998322 111223333 35566677777777666556666655 3433222212453
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCc------cHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKA------TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~------~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
.|.+.|++... .-|.. +|+.. --+.+.+.+.+.. ..|+|+++..|......+...|++.|.+|...-
T Consensus 256 ~t~~~l~~ia~--~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g 330 (421)
T cd01976 256 KIAESLRKIAA--YFDDE---ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTG 330 (421)
T ss_pred HHHHHHHHHHH--HhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEE
Confidence 45555554410 00332 12110 0111333343221 268999988776656677789999999987644
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEec-CC---C-
Q 022128 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP-TH---P- 283 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~-~~---~- 283 (302)
++... +...+.....+ ..+.+++-.+...+ +.+.+.+. +..++.-|..-...++++|+..+.+. .. |
T Consensus 331 ~~~~~--~~~~~~~~~~~-~~~~~i~~~~d~~e--~~~~i~~~---~pDliig~~~~~~~a~k~giP~~~~~~~~~~~~~ 402 (421)
T cd01976 331 YEFAH--RDDYERTEVIP-KEGTLLYDDVTHYE--LEEFVKRL---KPDLIGSGIKEKYVFQKMGIPFRQMHSWDYSGPY 402 (421)
T ss_pred eecCC--HHHHhhHHhhc-CCceEEEcCCCHHH--HHHHHHHh---CCCEEEecCcchhhhhhcCCCeEeCCccccCCCc
Confidence 43211 11112222222 23455544433333 44555442 23455556566677788898865432 22 2
Q ss_pred -ChHHHHHHHHHHH
Q 022128 284 -GLEGWVDSILEAL 296 (302)
Q Consensus 284 -~~~~ll~~i~~~~ 296 (302)
..+++++.+.+..
T Consensus 403 ~Gy~G~~~~~~~i~ 416 (421)
T cd01976 403 HGFDGFAIFARDMD 416 (421)
T ss_pred cchhhHHHHHHHHH
Confidence 5577777666554
No 179
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=71.42 E-value=37 Score=25.48 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=43.8
Q ss_pred EEEEeCCCcch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCC
Q 022128 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQW 254 (302)
Q Consensus 180 ~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~ 254 (302)
+||+.||.+-. ..+.+.++++|.++ .+... +. .+......++| +++++|.... .+-+.-+.....
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~---~v~~~---~~--~~~~~~~~~~D-iil~~Pqv~~-~~~~i~~~~~~~ 70 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA---EIEAV---PE--SELEEYIDDAD-VVLLGPQVRY-MLDEVKKKAAEY 70 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce---EEEEe---cH--HHHHHhcCCCC-EEEEChhHHH-HHHHHHHHhccC
Confidence 47888887753 36677788888763 22211 11 11111235677 6777877666 554433222233
Q ss_pred CceEEEECHHHH
Q 022128 255 SNSVACIGETTA 266 (302)
Q Consensus 255 ~~~i~~IG~~Ta 266 (302)
++++..|.+...
T Consensus 71 ~~pv~~I~~~~Y 82 (96)
T cd05564 71 GIPVAVIDMMDY 82 (96)
T ss_pred CCcEEEcChHhc
Confidence 678999988543
No 180
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.24 E-value=66 Score=29.28 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=54.1
Q ss_pred EEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEE
Q 022128 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVA 259 (302)
Q Consensus 180 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~ 259 (302)
+++++.|.+..+.+.+.+.+.+-+| ..+... .++.+.+...|+++..|. .. .+++.+.- +++++
T Consensus 213 ~~~~i~G~g~~~~l~~~~~~~~~~v---~~~g~~------~~~~~~l~~ad~~v~~sg--~~-t~~Eam~~----G~Pvv 276 (350)
T cd03785 213 QVIHQTGKGDLEEVKKAYEELGVNY---EVFPFI------DDMAAAYAAADLVISRAG--AS-TVAELAAL----GLPAI 276 (350)
T ss_pred EEEEEcCCccHHHHHHHHhccCCCe---EEeehh------hhHHHHHHhcCEEEECCC--Hh-HHHHHHHh----CCCEE
Confidence 4455666665555555554432111 111111 112222456788776554 23 34444432 56777
Q ss_pred EEC---------HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 260 CIG---------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 260 ~IG---------~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
++. ...++.+.+.|.-..+.+.+.+.++|.++|.+.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 277 LIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred EeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 652 23467788877654332233589999999987764
No 181
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=71.05 E-value=15 Score=29.47 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=50.4
Q ss_pred ChHHHHHHHHhCCCcEEEeceEE--eeeC-CCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEC
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQ--HAQG-PDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~--~~~~-~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG 135 (302)
....+...|+..|+++...|... .... .|..-....++. ...+|.+|+.|.-+ -|...+....-.++++.++|
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEEc
Confidence 56789999999999999999874 2222 243221222221 13688888888766 24443333222356666666
Q ss_pred h--hhHHHHHHH
Q 022128 136 A--GTASIFEEV 145 (302)
Q Consensus 136 ~--~Ta~~l~~~ 145 (302)
. .+...|++.
T Consensus 131 ~~~~~s~~L~~~ 142 (149)
T cd06167 131 FEAKTSRELRKA 142 (149)
T ss_pred cCccChHHHHHh
Confidence 5 577777766
No 182
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=70.95 E-value=1e+02 Score=29.55 Aligned_cols=222 Identities=15% Similarity=0.116 Sum_probs=110.2
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG- 135 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG- 135 (302)
...+..++.+.|++.|+++..+- ......+++. +..+...-|..++.....+.+.|++ .+.+-+...-+|
T Consensus 169 ~~~d~~el~~lL~~~Gl~v~~~~----~~~~s~eei~----~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~ 240 (410)
T cd01968 169 VAGELWGVKPLLEKLGIRVLASI----TGDSRVDEIR----RAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGI 240 (410)
T ss_pred CcccHHHHHHHHHHcCCeEEEEe----CCCCCHHHHH----hhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcH
Confidence 34566799999999999987531 1111233333 4555566665555444445666654 344322211144
Q ss_pred hhhHHHHHHHhhccCCCCce--eccCCCc--cHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 136 AGTASIFEEVIQSSKCSLDV--AFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 136 ~~Ta~~l~~~~~~~~~G~~~--~~~p~~~--~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+.|.+.|++.... -|... +..+... .-+.+.+.+.+.. ..|+++.+..+..-.-.+.+.|.+.|++|..+.+
T Consensus 241 ~~t~~~l~~ia~~--~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~ 318 (410)
T cd01968 241 RDTSKSLRNIAEL--LGDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDLGMEVVATGT 318 (410)
T ss_pred HHHHHHHHHHHHH--hCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEec
Confidence 3455666554210 04321 0011100 0111223333211 1578988877665667788999999999877654
Q ss_pred eeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecC-----CCC
Q 022128 210 YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT-----HPG 284 (302)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~-----~~~ 284 (302)
+...+ ...+.+.+ ....+.+++......+ +.+.+.+. +..++.-+..-...+++.|+..+.+.. ...
T Consensus 319 ~~~~~--~~~~~~~~-~~~~~~~v~~~~~~~e--~~~~i~~~---~pDl~ig~s~~~~~a~~~gip~~~~~~~~~~~~~G 390 (410)
T cd01968 319 QKGTK--EDYERIKE-LLGEGTVIVDDANPRE--LKKLLKEK---KADLLVAGGKERYLALKLGIPFCDINHERKHPYAG 390 (410)
T ss_pred ccCCH--HHHHHHHH-HhCCCcEEEeCCCHHH--HHHHHhhc---CCCEEEECCcchhhHHhcCCCEEEccccccCCccc
Confidence 43221 11122222 2234556666654433 22333332 223443444445666677887542221 134
Q ss_pred hHHHHHHHHHHHH
Q 022128 285 LEGWVDSILEALR 297 (302)
Q Consensus 285 ~~~ll~~i~~~~~ 297 (302)
.++.+..+++..+
T Consensus 391 y~G~~~l~~~i~n 403 (410)
T cd01968 391 YEGMLNFAKEVDL 403 (410)
T ss_pred hhhHHHHHHHHHH
Confidence 5666666655544
No 183
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.92 E-value=55 Score=29.96 Aligned_cols=151 Identities=21% Similarity=0.143 Sum_probs=77.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|.|++--|---+.-...+.+.--+..-+=.+.+.-...|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 129 (285)
T PRK14191 53 IKACERVGMDSDLHTLQENT---TEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKL 129 (285)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHH
Confidence 44566778887655442221 2334544444 34668999998883211111111111001111112222221111
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~ 219 (302)
+. |-. .+.| -|+.+..+.|..+.. .|++++++. |+....-+...|.++|+.|+.+.-..
T Consensus 130 --~~-----g~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------- 191 (285)
T PRK14191 130 --CS-----QLD-GFVP--ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------- 191 (285)
T ss_pred --hc-----CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------
Confidence 11 322 2443 467777777765432 689998884 44667778889999999987653211
Q ss_pred HHHHHHcCCCCEEEEECc
Q 022128 220 QTVLKQALSIPVVAVASP 237 (302)
Q Consensus 220 ~~~~~~~~~~d~ivftS~ 237 (302)
..+.+...+.|+|+-.-+
T Consensus 192 ~~l~~~~~~ADIvV~AvG 209 (285)
T PRK14191 192 KDLSFYTQNADIVCVGVG 209 (285)
T ss_pred HHHHHHHHhCCEEEEecC
Confidence 111222356687776553
No 184
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=70.77 E-value=55 Score=30.85 Aligned_cols=68 Identities=25% Similarity=0.199 Sum_probs=55.0
Q ss_pred CCCCEEEEECcHHHHHHHHHhhhccc-CCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022128 227 LSIPVVAVASPSAVRSSWVNLISDTE-QWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~~~~~~l~~~~-~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~ 295 (302)
..+|.|++.-|..+. ...+..++.. .++...-+--..|++.+.++|...++.|.+-+.+.+.+.+++.
T Consensus 91 ~GvDaviv~Dpg~i~-l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 91 LGVDAVIVADPGLIM-LARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred cCCCEEEEcCHHHHH-HHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 589999999999999 7766665432 2345667789999999999999998889999999998877654
No 185
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=70.10 E-value=14 Score=29.00 Aligned_cols=63 Identities=10% Similarity=0.183 Sum_probs=37.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---------av~~f~~~l~~~~~~~~~i~a 133 (302)
+.+.+.+.+.|+++..+++-+.. .. .+.++|.|||-||. .+..|++.+....+.+.++++
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~----~~-------~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~v 85 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADAD----AE-------DLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVAL 85 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCC----HH-------HHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEE
Confidence 34445566678777655543321 11 23568999998876 224566666554456777777
Q ss_pred ECh
Q 022128 134 VGA 136 (302)
Q Consensus 134 VG~ 136 (302)
+|-
T Consensus 86 fgt 88 (140)
T TIGR01753 86 FGS 88 (140)
T ss_pred Eec
Confidence 764
No 186
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=69.85 E-value=34 Score=30.84 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=56.3
Q ss_pred CCCeEEEeCCCCC--hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-H----------
Q 022128 49 SNPKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-S---------- 115 (302)
Q Consensus 49 ~g~~IlitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~---------- 115 (302)
.+++|+|.+..+- ..+....|++.|+++..+++-+..... ..+.+||.|||....+. +
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~---------~~l~~~DgLvipGGfs~gD~l~~g~~~~~ 72 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAER---------KSVSDYDCLVIPGGFSAGDYIRAGAIFAA 72 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccc---------cchhhCCEEEECCCCCcccccccchhhHH
Confidence 3578888876443 456789999999999888764421110 13567999999887321 1
Q ss_pred HHH----HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCce
Q 022128 116 VFL----EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (302)
Q Consensus 116 ~f~----~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~ 155 (302)
.+. +.+++.--.+.+++.|..+. +.|.+. |+-+
T Consensus 73 ~l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~------GlLp 109 (261)
T PRK01175 73 RLKAVLRKDIEEFIDEGYPIIGICNGF-QVLVEL------GLLP 109 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHC------CCCC
Confidence 111 22222212467888888766 678777 8753
No 187
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=69.80 E-value=31 Score=26.23 Aligned_cols=77 Identities=9% Similarity=0.149 Sum_probs=44.2
Q ss_pred EEEEeCCCcch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcc-cC
Q 022128 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDT-EQ 253 (302)
Q Consensus 180 ~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~-~~ 253 (302)
+||+.||.+.. +.+.+.++++|.+++-..+-.. ++-....++| +++.+|.... .++.+++. ..
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~--------e~~~~~~~~D-vill~PQv~~--~~~~i~~~~~~ 70 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYG--------SHYDMIPDYD-LVILAPQMAS--YYDELKKDTDR 70 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHH--------HHHHhccCCC-EEEEcChHHH--HHHHHHHHhhh
Confidence 58888877753 4677888999987542222111 1122245778 5666666444 44444432 23
Q ss_pred CCceEEEECHHHHH
Q 022128 254 WSNSVACIGETTAS 267 (302)
Q Consensus 254 ~~~~i~~IG~~Ta~ 267 (302)
.++++.+|-+....
T Consensus 71 ~~ipv~~I~~~~Yg 84 (99)
T cd05565 71 LGIKLVTTTGKQYI 84 (99)
T ss_pred cCCCEEEeCHHHHh
Confidence 35778888765443
No 188
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=69.40 E-value=93 Score=28.59 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=57.1
Q ss_pred EEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEE
Q 022128 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVA 259 (302)
Q Consensus 180 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~ 259 (302)
.++++.|.+..+.+.+.++ .|.+| .+.-|. + ++.+.+...|+++..|. -. .+++.+. .+++++
T Consensus 214 ~~~~~~G~g~~~~~~~~~~-~~~~v-~~~g~~----~----~~~~~~~~~d~~i~~~g--~~-~~~Ea~~----~g~Pvv 276 (357)
T PRK00726 214 QVIHQTGKGDLEEVRAAYA-AGINA-EVVPFI----D----DMAAAYAAADLVICRAG--AS-TVAELAA----AGLPAI 276 (357)
T ss_pred EEEEEcCCCcHHHHHHHhh-cCCcE-EEeehH----h----hHHHHHHhCCEEEECCC--HH-HHHHHHH----hCCCEE
Confidence 4566777776666666665 66541 122221 1 12222356788776664 23 3334442 256777
Q ss_pred EEC-------HH--HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 260 CIG-------ET--TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 260 ~IG-------~~--Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
++. .. .++.+.+.|.-..+-++..+.++|.++|.+.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 277 LVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred EecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 752 11 3567888776543323445689999999987653
No 189
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=69.25 E-value=1.2e+02 Score=29.70 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=110.0
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEECh-h
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-G 137 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~~i~aVG~-~ 137 (302)
.+..++...|++.|+++... +......+++ .+..+.+.-+..++.....+.+.|++. +.+-+.+--+|- .
T Consensus 212 gd~~el~~lL~~~Gl~v~~~----~~g~~s~~ei----~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~ 283 (457)
T TIGR01284 212 GDLWVLKKYFERMGIQVLST----FTGNGCYDEL----RWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEY 283 (457)
T ss_pred hhHHHHHHHHHHcCCeEEEE----ECCCCCHHHH----HhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHH
Confidence 34577899999999999721 1111222333 356666776666666656667777653 544333323664 3
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHH--------hcccC--CCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEE
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILAS--------ELPKN--GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVR 206 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~--------~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~ 206 (302)
|.+.|++.... -|+. . ..+.+++ .|..+ ...|+|+.+..+..-.--+...|. +.|.+|..
T Consensus 284 T~~~l~~ia~~--~g~~-----~--~~e~~i~~~~~~~~~~ld~~~~~L~GkrvaI~~~~~~~~~l~~~l~~ElGmevv~ 354 (457)
T TIGR01284 284 CAKNLRKIGEF--FGIE-----E--RAERVIEEEMAKWKPELDWYKERLRGKKVWVWSGGPKLWHWPRPLEDELGMEVVA 354 (457)
T ss_pred HHHHHHHHHHH--hCCc-----h--hHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 55555554210 0432 1 1221111 12111 126889988766544446777886 79999877
Q ss_pred EeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecC-----
Q 022128 207 LNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT----- 281 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~----- 281 (302)
+.++.. .....+.....+ ..+.+++-.+.-.+ +.+.+.+. +..++.-|..-...++++|+..+-+..
T Consensus 355 ~~~~~~--~~~~~~~~~~~~-~~~~~~i~d~~~~e--~~~~i~~~---~pDllig~~~~~~~a~k~gip~~~~~~~~~~~ 426 (457)
T TIGR01284 355 VSTKFG--HEDDYEKIIARV-REGTVIIDDPNELE--LEEIIEKY---KPDIILTGIREGELAKKLGVPYINIHSYHNGP 426 (457)
T ss_pred EEEEeC--CHHHHHHHHHhc-CCCeEEEeCCCHHH--HHHHHHhc---CCCEEEecCCcchhhhhcCCCEEEccccccCC
Confidence 544332 121112222222 23445555554433 33333332 234555555666677778887533211
Q ss_pred CCChHHHHHHHHHHHH
Q 022128 282 HPGLEGWVDSILEALR 297 (302)
Q Consensus 282 ~~~~~~ll~~i~~~~~ 297 (302)
....++.++.+.+..+
T Consensus 427 ~~Gy~G~~~l~~~i~n 442 (457)
T TIGR01284 427 YIGFEGFVNLARDMYN 442 (457)
T ss_pred ccchhhHHHHHHHHHH
Confidence 2356777776666554
No 190
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=69.19 E-value=99 Score=28.80 Aligned_cols=171 Identities=9% Similarity=0.082 Sum_probs=89.6
Q ss_pred CeEEEeCCCCChHH-HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-HHHHHHHHHHHHcCCCC
Q 022128 51 PKVVVTRERGKNGK-LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPN 128 (302)
Q Consensus 51 ~~IlitR~~~~~~~-l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-~av~~f~~~l~~~~~~~ 128 (302)
|+|++.-.++...+ ..+.++++|+++...+. +.+ .++ ++.+.++|.|++.+. .--+.+++.+.+. +
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~d~ii~~~~~~~~~~~l~~~~~~---~ 69 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----LLS--SAT---VDQLKDYDGVTTMQFGKLENDVYPKLESY---G 69 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCC----CCC--HHH---HHHhCCCCEEEEecCCCCCHHHHHhhhhc---C
Confidence 67887766554444 44566777776666442 222 222 234577898876432 2222234444322 3
Q ss_pred ceEE-EEChhhH----HHHHHHhhccCCCCceeccCCCccHHHHHHh-----------c-------cc----C-------
Q 022128 129 VRIG-VVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASE-----------L-------PK----N------- 174 (302)
Q Consensus 129 ~~i~-aVG~~Ta----~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----------L-------~~----~------- 174 (302)
+|++ ..|.+.- +++++. |+.+..+|. ++++.+++. + .. +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~ 142 (330)
T PRK12480 70 IKQIAQRTAGFDMYDLDLAKKH------NIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSK 142 (330)
T ss_pred ceEEEecccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCcc
Confidence 4443 3333322 344555 888766654 222222210 0 00 1
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC--CcHHHHHHcCCCCEEEEECcHHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSAV 240 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~ivftS~s~v 240 (302)
...|++|.++....-...+...|...|.+|..+..+....... ......+.+.+.|+|++.-|.+-
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~ 210 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK 210 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence 1156788888766666778999999998875444332211110 00011222467899999888775
No 191
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=68.91 E-value=86 Score=27.99 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEEC--HHHHHHHHHcCCCeEEecCCC
Q 022128 228 SIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIG--ETTASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 228 ~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG--~~Ta~~l~~~G~~~~~v~~~~ 283 (302)
++++|+..+...+. ..++.+++... .++.++.++ +.+.+.+++ |.-...+...|
T Consensus 185 ~~~ai~~~~d~~a~-ga~~al~~~g~~~~i~vvg~d~~~~~~~~l~~-g~i~~~~~q~p 241 (302)
T TIGR02637 185 NLKGIIAPTTVGIK-AAAQAVSDAKLIGKVKLTGLGLPSEMAKYVKN-GTVKAFALWNP 241 (302)
T ss_pred CccEEEeCCCchHH-HHHHHHHhcCCCCCEEEEEcCCcHHHHHHHhc-CccceEEEeCH
Confidence 57788877666666 56566655332 246677776 455667765 54333333443
No 192
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=68.86 E-value=79 Score=27.56 Aligned_cols=153 Identities=14% Similarity=0.044 Sum_probs=75.1
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCC-CCceeccCCCccHHHHHHhcccCCCCCC
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKC-SLDVAFSPSKATGKILASELPKNGKKKC 179 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~-G~~~~~~p~~~~~e~L~~~L~~~~~~~~ 179 (302)
...|+||..+..+.... .+. ..+++++.+|...... .....+... +............+.+++.|.+.....+
T Consensus 59 ~~vd~iI~~~~~~~~~~--~~~---~~~iPvV~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 132 (281)
T cd06325 59 DKPDLIVAIATPAAQAA--ANA---TKDIPIVFTAVTDPVG-AGLVKSLEKPGGNVTGVSDLVPVETQLELLKKLLPDAK 132 (281)
T ss_pred cCCCEEEEcCcHHHHHH--HHc---CCCCCEEEEecCCccc-cccccccccCCCceeCeecccchHHHHHHHHHHCCCCc
Confidence 57899998765443322 121 2467888887432111 000000000 1111111222334555555555422346
Q ss_pred EEEEeCCCc------chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhccc
Q 022128 180 TVLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTE 252 (302)
Q Consensus 180 ~vL~~rg~~------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~ 252 (302)
+|.++.+.. ....+.+.+++.|..+.....+ ......+..+.+ ...|+|++.+-..+. .....+.+..
T Consensus 133 ~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~dai~~~~d~~a~-~~~~~~~~~~ 207 (281)
T cd06325 133 TVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVS----SSNDVQQAAQSLAGKVDAIYVPTDNTVA-SAMEAVVKVA 207 (281)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecC----CHHHHHHHHHHhcccCCEEEEcCchhHH-hHHHHHHHHH
Confidence 788774422 1255667788888776442111 111111223332 457898888777666 5555555432
Q ss_pred -CCCceEEEECHH
Q 022128 253 -QWSNSVACIGET 264 (302)
Q Consensus 253 -~~~~~i~~IG~~ 264 (302)
..+++++++...
T Consensus 208 ~~~~ipvig~d~~ 220 (281)
T cd06325 208 NEAKIPVIASDDD 220 (281)
T ss_pred HHcCCCEEEcCHH
Confidence 135778888765
No 193
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.53 E-value=84 Score=27.74 Aligned_cols=193 Identities=13% Similarity=0.020 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|++++..... .+.+...+.++. ..+.|+||+++.. .....++.+.+ .+++++.+|....
T Consensus 21 gi~~~a~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~---~~iPvV~~d~~~~ 92 (280)
T cd06315 21 GVREAAKAIGWNLRILDGR-----GSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK---AGIPVVGWHAGPE 92 (280)
T ss_pred HHHHHHHHcCcEEEEECCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH---CCCCEEEecCCCC
Confidence 3446778889887765321 122222223322 3679999998763 22333444443 3688888886421
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch------hhHHHHHHhC-CCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~-G~~v~~~~vY~ 211 (302)
..-... ...+.. +..+. ..+..+++.|.+.....++|+++.+.... .-+...++.. +..+....-+.
T Consensus 93 ~~~~~~----~~~~~~-v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 167 (280)
T cd06315 93 PGPIEE----PGIFYN-VTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMKEIIEACKGCTVLSIEDVP 167 (280)
T ss_pred CCcccC----CceeEE-ecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHHHHHHhCCCCEEEEecccC
Confidence 000000 000111 22222 23345556665542233678888654321 2233333332 33331111011
Q ss_pred eecCCC-Cc---HHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCC---CceEEEECHHHHHHHH
Q 022128 212 TEPVHH-VD---QTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQW---SNSVACIGETTASAAK 270 (302)
Q Consensus 212 ~~~~~~-~~---~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~---~~~i~~IG~~Ta~~l~ 270 (302)
...... .. .+++... ..+++|+..|-..+. .++..+.+.... ...+++.+......+.
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~D~~A~-g~~~~l~~~g~~~p~~~~~i~~~d~~~~~~~ 233 (280)
T cd06315 168 ISRTATRMPALTARLLQRYGDKWTHSLAINDLYFD-YMAPPLASAGRKADEDPRNISAGDGSAAAFQ 233 (280)
T ss_pred cchhhhhhHHHHHHHHHhcCcccceecccchhhhH-HhHHHHHHhcccCCCCceEEecCCCCHHHHH
Confidence 100000 00 1122211 347999999988887 777777765322 3445555454444443
No 194
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=67.44 E-value=35 Score=28.44 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=49.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEC-h-
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVG-A- 136 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG-~- 136 (302)
...+...|...|++++.. ....|..-.-.+++-+ +++|.+++.|.-+ ...+...+++ .+++++++| +
T Consensus 68 ~~~l~~~l~~~Gf~pv~~-----kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre---~G~~V~v~g~~~ 139 (160)
T TIGR00288 68 SDKLIEAVVNQGFEPIIV-----AGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKE---NGKETIVIGAEP 139 (160)
T ss_pred cHHHHHHHHHCCceEEEe-----cCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHH---CCCEEEEEeCCC
Confidence 356889999999997631 2122332222334222 6789888877765 4445555555 367888888 4
Q ss_pred hhHHHHHHHh
Q 022128 137 GTASIFEEVI 146 (302)
Q Consensus 137 ~Ta~~l~~~~ 146 (302)
.|+..|++.|
T Consensus 140 ~ts~~L~~ac 149 (160)
T TIGR00288 140 GFSTALQNSA 149 (160)
T ss_pred CChHHHHHhc
Confidence 5999999885
No 195
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=67.40 E-value=21 Score=29.72 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 222 VLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 222 ~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
+.+.+...|.|+|.|| ..++ +|++.+.
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LK-n~lD~~~ 95 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFK-HLFDLVD 95 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHH-HHHHhcC
Confidence 3444568899999998 5677 7888765
No 196
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=67.20 E-value=9.7 Score=29.81 Aligned_cols=42 Identities=10% Similarity=0.174 Sum_probs=34.5
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccCC
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
-||+.....|++.|++++.....-+.++.++.+.+.+..-++
T Consensus 71 ~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~~~ 112 (119)
T TIGR02663 71 AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGNPP 112 (119)
T ss_pred hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCCCC
Confidence 599999999999999986545556899999999998865544
No 197
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=66.91 E-value=15 Score=30.66 Aligned_cols=66 Identities=17% Similarity=0.020 Sum_probs=43.5
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--------CCCCceEEE
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--------GTPNVRIGV 133 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~--------~~~~~~i~a 133 (302)
++.++..|++.|++|...|+-+... + ++++||.||+-++-=-..|.+.+.+. .-...-+||
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~~~~----------~-~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHAVEE----------P-ALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhhhhc----------c-ChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4667888999999998776655542 1 56889999999886555554444321 112445777
Q ss_pred EChhh
Q 022128 134 VGAGT 138 (302)
Q Consensus 134 VG~~T 138 (302)
|+...
T Consensus 87 vnl~a 91 (175)
T COG4635 87 VNLTA 91 (175)
T ss_pred eehhh
Confidence 77643
No 198
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.34 E-value=62 Score=29.65 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=82.6
Q ss_pred EEEeCCCCChHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeChHH--HH--HHHHHH
Q 022128 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--GS--VFLEAW 121 (302)
Q Consensus 53 IlitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~l~~~d~IifTS~~a--v~--~f~~~l 121 (302)
++..-..+.+..+ .+..++.|+++..+-+-+.. ..+++.+. |+...+.|+|+.--|-- .. ..++.+
T Consensus 43 ii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I 119 (287)
T PRK14176 43 TILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT---TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAI 119 (287)
T ss_pred EEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhcc
Confidence 4444444444434 44567779887655443322 22334444 44456789999988732 21 111111
Q ss_pred HHc-CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHH
Q 022128 122 KEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGL 197 (302)
Q Consensus 122 ~~~-~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L 197 (302)
... ..+++.-+-.| .| +. |-. .+.| -|+.+.++.|..+.. .|++++++ ||.....-|...|
T Consensus 120 ~p~KDVDGl~~~N~g-----~l--~~-----g~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL 184 (287)
T PRK14176 120 DPAKDADGFHPYNMG-----KL--MI-----GDE-GLVP--CTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAML 184 (287)
T ss_pred CccccccccChhhhh-----hH--hc-----CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHH
Confidence 110 11222222222 11 11 321 2444 368888777765542 68898888 6665677789999
Q ss_pred HhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEE
Q 022128 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (302)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivf 234 (302)
.+.|+.|+.+..... ...+ ...+.|+|+.
T Consensus 185 ~~~~atVtv~hs~T~-----~l~~---~~~~ADIvv~ 213 (287)
T PRK14176 185 LNRNATVSVCHVFTD-----DLKK---YTLDADILVV 213 (287)
T ss_pred HHCCCEEEEEeccCC-----CHHH---HHhhCCEEEE
Confidence 999999977664321 1121 2346787765
No 199
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=66.09 E-value=1.3e+02 Score=28.92 Aligned_cols=219 Identities=14% Similarity=0.155 Sum_probs=108.8
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEChh
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
..+..++.+.|++.|+++...- ......++ +.+..+...-+..++.....+.+.|++ .+.+-+.+--+|-.
T Consensus 174 ~~d~~ei~~lL~~~Gl~v~~~~----~~~~t~~e----i~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~ 245 (415)
T cd01977 174 QGDTEVLQKYFERMGIQVLSTF----TGNGTYDD----LRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFE 245 (415)
T ss_pred cccHHHHHHHHHHcCCeEEEEE----CCCCCHHH----HHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHH
Confidence 3455789999999999997211 11122232 335667677666665544556666665 35544333346754
Q ss_pred -hHHHHHHHhhccCCCCceec---cCCCccHHHHHHhcccC--CCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEEEeee
Q 022128 138 -TASIFEEVIQSSKCSLDVAF---SPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (302)
Q Consensus 138 -Ta~~l~~~~~~~~~G~~~~~---~p~~~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~~vY 210 (302)
|.+.|++.... -|.+... +|+.. +.....|... ...|+++.+..+....--+...|. +.|++|..+..+
T Consensus 246 ~t~~~l~~la~~--~g~~~~~e~~i~~~~--~~~r~~l~~~~~~l~Gk~vai~~~~~~~~~la~~l~~elG~~v~~i~~~ 321 (415)
T cd01977 246 YCAESLRKIGAF--FGIEDRAEAVIAEEM--AKWKPELDWYKERLKGKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSK 321 (415)
T ss_pred HHHHHHHHHHHH--hCcchhHHHHHHHHH--HHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhcCCEEEEEEEE
Confidence 54555544110 0443210 11110 0001112211 125789988766655567788885 899999765443
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCC---C--Ch
Q 022128 211 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH---P--GL 285 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~---~--~~ 285 (302)
... .......+..+ ..+.++.-....++ +.+.+.+. +..++.-+..-...++++|+..+.+... + ..
T Consensus 322 ~~~--~~~~~~~~~~~-~~~~~~v~d~~~~e--~~~~~~~~---~pdliig~s~~~~~a~~lgip~~~~~~~~~~~~~Gy 393 (415)
T cd01977 322 FGH--QEDFEKVIARG-GEGTIYIDDPNELE--FFEILEML---KPDIILTGPRVGELVKKLHVPYVNIHAYHNGPYMGF 393 (415)
T ss_pred ecc--HHHHHHHHHhc-CCceEEEeCCCHHH--HHHHHHhc---CCCEEEecCccchhhhhcCCCEEeccCCcCCCccch
Confidence 221 11112222222 23445555545444 22333332 2344444444456667788875433221 2 45
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
++.+..+.+..+
T Consensus 394 ~G~~~l~~~i~n 405 (415)
T cd01977 394 EGFVNLARDMYN 405 (415)
T ss_pred hhHHHHHHHHHH
Confidence 666666555543
No 200
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.56 E-value=41 Score=25.07 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=33.5
Q ss_pred EEEeCC-CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 53 VVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 53 IlitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
|||.-. ......+.+.++++|++.+.. --+-........++. .+.+.|.||+..-.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~---~i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPS---KIKKADLVIVFTDY 58 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHH---hcCCCCEEEEEeCC
Confidence 555555 345678999999999999988 111111011112444 35778988876543
No 201
>PRK06703 flavodoxin; Provisional
Probab=65.52 E-value=18 Score=29.27 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh--------HHHHHHHHHHHHcCCCCceEEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~--------~av~~f~~~l~~~~~~~~~i~aV 134 (302)
..+++.|+..|+++....+-+.. .. .+.++|.|+|-|| ..+..|+..+....+.+.+++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~----~~-------~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vf 88 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMD----AE-------ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVF 88 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCC----HH-------HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 33445566667776654432211 11 3467899999664 24666777666544567778777
Q ss_pred Ch
Q 022128 135 GA 136 (302)
Q Consensus 135 G~ 136 (302)
|-
T Consensus 89 g~ 90 (151)
T PRK06703 89 GS 90 (151)
T ss_pred cc
Confidence 74
No 202
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=65.13 E-value=38 Score=29.44 Aligned_cols=93 Identities=11% Similarity=0.120 Sum_probs=53.8
Q ss_pred CeEEEeCCC-CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcC
Q 022128 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (302)
Q Consensus 51 ~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~~~ 125 (302)
|+|++.... .....+...|++.|+.+..+|.-... ...... .+..+|+||++ ++.....-.+.+++..
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~---~~~~~dgliisGGp~~~~~~~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPR----LADEAA---VAAQFDGVLLSPGPGTPERAGASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcC----HHHHHH---hhcCCCEEEECCCCCChhhcchHHHHHHHHH
Confidence 466666543 33456888999999999988775421 111111 13579999998 5554332222222221
Q ss_pred CCCceEEEEChhhHHHHHHHhhccCCCCcee
Q 022128 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (302)
Q Consensus 126 ~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~ 156 (302)
-.+++++.|.-+- +.+-..+ |-++.
T Consensus 74 ~~~~PiLGIC~G~-Qlla~a~-----GG~v~ 98 (214)
T PRK07765 74 AAGTPLLGVCLGH-QAIGVAF-----GATVD 98 (214)
T ss_pred hCCCCEEEEccCH-HHHHHHh-----CCEEe
Confidence 1368887666655 4444444 76653
No 203
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=64.79 E-value=54 Score=25.35 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=51.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh----HHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~----~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..++...|++.|.+++.. .+.+.....++...++++||++-- .....+++.+.+.+ .++|+|+++..
T Consensus 6 ~~~l~~~L~~~~~~vv~~--------~~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~ 76 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDA--------DSTDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERN-FGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHTTTEEEEE--------SSHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHS-TT-EEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEe--------CChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhC-CCCCEEEEecC
Confidence 457888999899888743 234556677778889999999987 66666777777765 48999999985
Q ss_pred h
Q 022128 138 T 138 (302)
Q Consensus 138 T 138 (302)
+
T Consensus 77 ~ 77 (115)
T PF03709_consen 77 D 77 (115)
T ss_dssp C
T ss_pred C
Confidence 5
No 204
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=64.63 E-value=35 Score=32.27 Aligned_cols=68 Identities=13% Similarity=-0.017 Sum_probs=44.4
Q ss_pred ccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 162 ATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
-|+.+.++.|..+.. .|++++++ |++....-|...|.++|+.|+.+.-.. ....+. ..+.|+|+..-+
T Consensus 213 CTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T-----~nl~~~---~r~ADIVIsAvG 283 (364)
T PLN02616 213 CTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT-----KNPEEI---TREADIIISAVG 283 (364)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC-----CCHHHH---HhhCCEEEEcCC
Confidence 457777777765432 68888777 777777889999999999887654322 112222 246677665543
No 205
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=64.40 E-value=1.2e+02 Score=27.98 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|+++.....-. ..+.+...+.++. -.++|+||+.+.. .+...+ .+.+ .++++++++....
T Consensus 67 gi~~aa~~~G~~l~i~~~~~---~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~---~giPvV~~~~~~~ 139 (343)
T PRK10936 67 GMVEEAKRLGVDLKVLEAGG---YYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQA---ANIPVIALVNGID 139 (343)
T ss_pred HHHHHHHHhCCEEEEEcCCC---CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHH---CCCCEEEecCCCC
Confidence 34455667898876653211 1122222222322 2569999997632 221222 2333 3678887754321
Q ss_pred HHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCC---CCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEe
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG---KKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~---~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~ 208 (302)
. . +....+..+.+ .+...++.|.+.. ...++|+++.|.... .-+.+.+++.|+.+...
T Consensus 140 ~----~------~~~~~V~~D~~~~g~~aa~~L~~~~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~~~~~- 208 (343)
T PRK10936 140 S----P------QVTTRVGVSWYQMGYQAGRYLAQWHPKGSKPLNVALLPGPEGAGGSKAVEQGFRAAIAGSDVRIVDI- 208 (343)
T ss_pred C----c------cceEEEecChHHHHHHHHHHHHHHHHhcCCCceEEEEECCCCCchHHHHHHHHHHHHhcCCCEEEEe-
Confidence 0 1 11011222221 2233334444332 123589888775432 23456677777765431
Q ss_pred eeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEE--CHHHHHHHHHcCC
Q 022128 209 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACI--GETTASAAKRLGL 274 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~I--G~~Ta~~l~~~G~ 274 (302)
++ .........+..+. + .++++|+ .+...+. ..++.+.+.+. .++.++++ .|...+++++ |.
T Consensus 209 ~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~d~~A~-ga~~al~~~g~~~di~Vvg~~~~p~~~~~i~~-G~ 277 (343)
T PRK10936 209 AY-GDNDKELQRNLLQELLERHPDIDYIA-GSAVAAE-AAIGELRGRNLTDKIKLVSFYLSHQVYRGLKR-GK 277 (343)
T ss_pred ec-CCCcHHHHHHHHHHHHHhCCCccEEE-eCCHHHH-HHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHc-CC
Confidence 11 11111111112222 2 3578876 5555555 55566655432 23455543 4555566665 44
No 206
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=64.37 E-value=1.2e+02 Score=28.14 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=78.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+.+.|++.|+++...+.- ...+.+. .+ .-+..|...+++..++.... ..+. .+++++++...
T Consensus 26 fe~~l~~~Gl~Ve~~~f~-----~~~~~l~-Al-~aG~iD~~~~g~~~~~~~~~----a~g~-~~~iv~v~~~~------ 87 (328)
T TIGR03427 26 VDKWADKYGITIEVVQIN-----DYVESIN-QY-TAGKFDGCTMTNMDALTIPA----AGGV-DTTALIVGDFS------ 87 (328)
T ss_pred hhhhHHHcCCeEEEEECC-----ChHHHHH-HH-HcCCCCEEeecCHHHHHHHH----hCCC-CeEEEEEEccC------
Confidence 445667778776544321 1122333 33 34778887777766653221 2232 35666666432
Q ss_pred HhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHH
Q 022128 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224 (302)
Q Consensus 145 ~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~ 224 (302)
. |-...+++.. +.+.++ +||+|.+.+|..+.-.|...|++.|.....+.+-...+ .+...
T Consensus 88 ~------g~~~ivv~~i-------~svaDL--KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~-----~d~~a 147 (328)
T TIGR03427 88 N------GNDGIVLKGG-------KSLADL--KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD-----ADIVA 147 (328)
T ss_pred C------CceEEEECCC-------CCHHHc--CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh-----HHHHH
Confidence 1 3222233321 222222 68999999998888899999999998754444433322 11222
Q ss_pred Hc--CCCCEEEEECcHHHH
Q 022128 225 QA--LSIPVVAVASPSAVR 241 (302)
Q Consensus 225 ~~--~~~d~ivftS~s~v~ 241 (302)
.+ +++|+++..-|...+
T Consensus 148 Al~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 148 AFITKDVTAVVTWNPQLSE 166 (328)
T ss_pred HHhcCCCcEEEEcCchHHH
Confidence 22 689998888877554
No 207
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=64.07 E-value=39 Score=29.60 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=49.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH
Q 022128 51 PKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (302)
Q Consensus 51 ~~IlitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~ 122 (302)
++|++...... ..-+.+.++++ |.++................+.+.+....+.|+|+..+-..+..+.+++.
T Consensus 123 ~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~ 202 (275)
T cd06320 123 GKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVK 202 (275)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHH
Confidence 46776543211 24466778888 87765321111110001124445554445688888888888877888888
Q ss_pred HcCCC-CceEEEEChh
Q 022128 123 EAGTP-NVRIGVVGAG 137 (302)
Q Consensus 123 ~~~~~-~~~i~aVG~~ 137 (302)
+.++. ++.++..+..
T Consensus 203 ~~g~~~di~vig~d~~ 218 (275)
T cd06320 203 NAGKQGKVLVVGTDGI 218 (275)
T ss_pred hcCCCCCeEEEecCCC
Confidence 87764 5555555543
No 208
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=64.02 E-value=1.5e+02 Score=29.08 Aligned_cols=199 Identities=12% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEEC-h
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-A 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~~i~aVG-~ 136 (302)
..+..++.+.|++.|+++...- ......+++. +..+...-+..++.....+.+.|++. +.+-+...-+| .
T Consensus 203 ~gd~~elk~lL~~~Gl~v~~~~----~~~~s~eei~----~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~ 274 (475)
T PRK14478 203 AGELWQVKPLLDRLGIRVVACI----TGDARYDDVA----SAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIE 274 (475)
T ss_pred CCCHHHHHHHHHHcCCeEEEEc----CCCCCHHHHH----hcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHH
Confidence 3455789999999999998421 1111233333 45555554444555445556666553 44322211244 3
Q ss_pred hhHHHHHHHhhccCCCCceeccCCC--ccHH--------HHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSK--ATGK--------ILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~--~~~e--------~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
.|.+.|++..+- .+|-. .+.. ...+ .+...+.... ..|+++.+..+..-.-.|...|.+.|++|
T Consensus 275 ~T~~~l~~la~~-~~~~~---~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~~~~~~la~~l~ElGm~v 350 (475)
T PRK14478 275 DTSDSLRQIARL-LVERG---ADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGGVKSWSVVKALQELGMEV 350 (475)
T ss_pred HHHHHHHHHHHH-HhhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEE
Confidence 466666665210 00000 1110 0011 1222222211 15789887765544446888999999999
Q ss_pred EEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeE
Q 022128 205 VRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 277 (302)
Q Consensus 205 ~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~ 277 (302)
..+.++... +.+.+ .++.+...+.+++......+ +.+.+.+. +..++.-|..-....++.|+..+
T Consensus 351 ~~~~~~~~~--~~~~~-~l~~~~~~~~~v~~d~~~~e--~~~~i~~~---~pDliig~s~~~~~a~k~giP~~ 415 (475)
T PRK14478 351 VGTSVKKST--DEDKE-RIKELMGPDAHMIDDANPRE--LYKMLKEA---KADIMLSGGRSQFIALKAGMPWL 415 (475)
T ss_pred EEEEEECCC--HHHHH-HHHHHcCCCcEEEeCCCHHH--HHHHHhhc---CCCEEEecCchhhhhhhcCCCEE
Confidence 876665432 22112 23222344666766654443 33434332 23344445555566666888753
No 209
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=63.74 E-value=51 Score=25.89 Aligned_cols=94 Identities=22% Similarity=0.252 Sum_probs=55.4
Q ss_pred EEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCCCceE
Q 022128 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRI 131 (302)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i 131 (302)
||+|.+- .+...+.|++ |+++...+ ..+.+++.+. +.++|.|+..+.. --+.+++.+ +++|+
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~------~~~~~~~~~~---l~~~d~ii~~~~~~~~~~~l~~~-----~~Lk~ 63 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCD------SPSEEELAER---LKDADAIIVGSGTPLTAEVLEAA-----PNLKL 63 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEES------SSSHHHHHHH---HTTESEEEESTTSTBSHHHHHHH-----TT-SE
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeC------CCCHHHHHHH---hCCCeEEEEcCCCCcCHHHHhcc-----ceeEE
Confidence 6788864 5677788888 77777666 2233445554 4679999987766 223344444 34554
Q ss_pred EE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh
Q 022128 132 GV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170 (302)
Q Consensus 132 ~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~ 170 (302)
++ .|.+. -+++.+. |+.+.-+|. ..++..++.
T Consensus 64 I~~~~~G~d~id~~~a~~~------gI~V~n~~g-~~~~aVAE~ 100 (133)
T PF00389_consen 64 ISTAGAGVDNIDLEAAKER------GIPVTNVPG-YNAEAVAEH 100 (133)
T ss_dssp EEESSSSCTTB-HHHHHHT------TSEEEE-TT-TTHHHHHHH
T ss_pred EEEcccccCcccHHHHhhC------eEEEEEeCC-cCCcchhcc
Confidence 33 33222 3566777 998876654 456566544
No 210
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=63.69 E-value=52 Score=31.20 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=49.0
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceec--cCCCccHHHHHHhcccCCCCCCEEEEeC-----CCcchh
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF--SPSKATGKILASELPKNGKKKCTVLYPA-----SAKASN 191 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~--~p~~~~~e~L~~~L~~~~~~~~~vL~~r-----g~~~~~ 191 (302)
+.|++..-.+..|.+=|+.=.++|++. |++-.+ +..... -+.++.|.+.. -++|++.. |+....
T Consensus 15 ~~l~~~~~~~~~ilveg~~d~~~l~~l------gi~g~~i~~s~~p~-~~cad~ii~~g--i~rVVi~~D~d~~G~~~~~ 85 (360)
T PRK14719 15 DDLKLLAEKGIPILVEGPNDILSLKNL------KINANFITVSNTPV-FQIADDLIAEN--ISEVILLTDFDRAGRVYAK 85 (360)
T ss_pred HHHHHhhhCCCEEEEEcchHHHHHHHc------CCCCcEEEEeCCch-HHHHHHHHHcC--CCEEEEEECCCCCCCccch
Confidence 333333334789999999999999999 985222 222222 22445554332 25777765 333344
Q ss_pred hHHHHHHhCCCeeE
Q 022128 192 EIEEGLSNRGFEVV 205 (302)
Q Consensus 192 ~L~~~L~~~G~~v~ 205 (302)
.+.+.|+++|++|.
T Consensus 86 ~~~~~L~~aGi~V~ 99 (360)
T PRK14719 86 NIMEEFQSRGIKVN 99 (360)
T ss_pred HHHHHHHHCCCEEE
Confidence 67899999999994
No 211
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.65 E-value=1.1e+02 Score=27.33 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=100.8
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCC--
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTP-- 127 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-av~~f~~~l~~~~~~-- 127 (302)
|+|||.-...+..++++.|.+.|. +.+++..-.. . .+........-+.+-+- ....+.+.+.+.+++
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~sv~t~~g----~----~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIVSVATSYG----G----ELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEEEEEhhhh----H----hhhccccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 789999999999999999999998 3333322110 0 00011111223334343 444444444444331
Q ss_pred ---CceEEE-EChhhHHHHHHHhhccCCCCceec------cC-------CCccHHHHHHhcccCCCCCCEEEEeCCCcch
Q 022128 128 ---NVRIGV-VGAGTASIFEEVIQSSKCSLDVAF------SP-------SKATGKILASELPKNGKKKCTVLYPASAKAS 190 (302)
Q Consensus 128 ---~~~i~a-VG~~Ta~~l~~~~~~~~~G~~~~~------~p-------~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~ 190 (302)
.-+++. |-+...++.++. |++..- .+ .-.+.++.++.+.+. .+++|++..|.+.-
T Consensus 71 IDATHPfA~~is~na~~a~~~~------~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~--~~~~iflttGsk~L 142 (249)
T PF02571_consen 71 IDATHPFAAEISQNAIEACREL------GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKEL--GGGRIFLTTGSKNL 142 (249)
T ss_pred EECCCchHHHHHHHHHHHHhhc------CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhc--CCCCEEEeCchhhH
Confidence 222322 222223333333 543210 00 013556676777543 34899999988876
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEE---CHH---
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI---GET--- 264 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~I---G~~--- 264 (302)
+.+.. +...+ ..+|-++.+..... -.+..-++|..--|-+.+ .=..++++. ++.+++- |..
T Consensus 143 ~~f~~-~~~~~-----~r~~~RvLp~~~~~---~g~~~~~iia~~GPfs~e-~n~al~~~~---~i~~lVtK~SG~~g~~ 209 (249)
T PF02571_consen 143 PPFVP-APLPG-----ERLFARVLPTPESA---LGFPPKNIIAMQGPFSKE-LNRALFRQY---GIDVLVTKESGGSGFD 209 (249)
T ss_pred HHHhh-cccCC-----CEEEEEECCCcccc---CCCChhhEEEEeCCCCHH-HHHHHHHHc---CCCEEEEcCCCchhhH
Confidence 66544 22222 35555555443321 012456788888877777 444555443 2333321 221
Q ss_pred -HHHHHHHcCCCeEEe
Q 022128 265 -TASAAKRLGLKNVYY 279 (302)
Q Consensus 265 -Ta~~l~~~G~~~~~v 279 (302)
=-++++++|+.++++
T Consensus 210 eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 210 EKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 124577889987655
No 212
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=63.57 E-value=1.5e+02 Score=29.01 Aligned_cols=221 Identities=12% Similarity=0.122 Sum_probs=114.9
Q ss_pred eEEEeC--CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh---HHHHHHHHHHHHcCC
Q 022128 52 KVVVTR--ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP---EAGSVFLEAWKEAGT 126 (302)
Q Consensus 52 ~IlitR--~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~---~av~~f~~~l~~~~~ 126 (302)
.|.+.- +......+...|++.|+++..+-. ....++|. .++....++.+|| .+..++.+.+ +.
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp-----~~~~~eL~----~~~~~~~~c~~~P~ls~aa~~Le~~~---gv 262 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLP-----SQRYTDLP----SLGEGVYVCGVNPFLSRTATTLMRRR---KC 262 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeC-----CCCHHHHH----hhCcccEEEEcCcchHHHHHHHHHHh---CC
Confidence 444443 455678899999999999973321 12234444 3445566776774 4444443332 31
Q ss_pred C--CceEEEECh-hhHHHHHHHhhccCCCCceeccCCCc--cHHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHh
Q 022128 127 P--NVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSN 199 (302)
Q Consensus 127 ~--~~~i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~ 199 (302)
+ ..+ +-+|. .|.+.|++.... -|+. |+.. --..+.+.|..... .|||+.+..+..-.--|...|.+
T Consensus 263 p~~~~P-~PiGi~~Td~fLr~Ia~~--~G~~----pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~e 335 (457)
T CHL00073 263 KLIGAP-FPIGPDGTRAWIEKICSV--FGIE----PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIR 335 (457)
T ss_pred ceeecC-CcCcHHHHHHHHHHHHHH--hCcC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHH
Confidence 1 222 22664 466666655210 0432 3221 01113333433211 68999977776777789999999
Q ss_pred CCCeeEEEeeeeeecCCCC---cHHHHHHc-C--C-CCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHc
Q 022128 200 RGFEVVRLNTYTTEPVHHV---DQTVLKQA-L--S-IPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRL 272 (302)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~---~~~~~~~~-~--~-~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~ 272 (302)
.|.+|..+-+-. ..+.. ..+.+..+ + . .+.++...+. .. .+.+.+.+. +.-++.-|-..+..|...
T Consensus 336 lGmevV~vgt~~--~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D-~~-el~~~i~~~---~pDLlIgG~~~~~Pl~~~ 408 (457)
T CHL00073 336 CGMIVYEIGIPY--MDKRYQAAELALLEDTCRKMNVPMPRIVEKPD-NY-NQIQRIREL---QPDLAITGMAHANPLEAR 408 (457)
T ss_pred CCCEEEEEEeCC--CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCC-HH-HHHHHHhhC---CCCEEEccccccCchhhc
Confidence 999987663321 11111 11222222 1 1 3456666665 44 355666543 233444455777888888
Q ss_pred CCCeE-----EecCCCC---hHHHHHHHHHHHHc
Q 022128 273 GLKNV-----YYPTHPG---LEGWVDSILEALRE 298 (302)
Q Consensus 273 G~~~~-----~v~~~~~---~~~ll~~i~~~~~~ 298 (302)
|+... ....... .-.|++.+...++.
T Consensus 409 G~p~~d~~~~~~~pi~Gy~ga~~L~e~~~~~l~r 442 (457)
T CHL00073 409 GINTKWSVEFTFAQIHGFTNARDVLELVTRPLRR 442 (457)
T ss_pred CCcceEecceEEEccccHhhHHHHHHHHHHHHHH
Confidence 88631 1122222 34566665555544
No 213
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.61 E-value=76 Score=29.04 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=81.0
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChH--HH--HHHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AG--SVFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~--av--~~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|- .. ...++.+.- ...+++.-+-.|.
T Consensus 55 ~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~- 130 (285)
T PRK10792 55 RKACEEVGFVSRSYDLPETT---SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGR- 130 (285)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHhH-
Confidence 44567779887665442221 2234444443 44568899988773 22 111221111 0112332222221
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
|. . |-. .+.| -|+.+.++.|..+.. .|++++++ ||.....-|...|...|+.|+.+.-..
T Consensus 131 ----l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T--- 193 (285)
T PRK10792 131 ----LA-Q------RIP-LLRP--CTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT--- 193 (285)
T ss_pred ----Hh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---
Confidence 11 1 321 2444 367787777765532 68898888 666567778999999999886664321
Q ss_pred CCCCcHHHHHHcCCCCEEEEEC--cHHHH
Q 022128 215 VHHVDQTVLKQALSIPVVAVAS--PSAVR 241 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS--~s~v~ 241 (302)
.. +.+...+.|+|+-+- |.-+.
T Consensus 194 --~~---l~~~~~~ADIvi~avG~p~~v~ 217 (285)
T PRK10792 194 --KN---LRHHVRNADLLVVAVGKPGFIP 217 (285)
T ss_pred --CC---HHHHHhhCCEEEEcCCCccccc
Confidence 11 122235778888777 55444
No 214
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.30 E-value=79 Score=28.97 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=78.6
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|-- +. ..++.+.-. ..+++.-+-.|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 130 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEETA---TEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKL 130 (286)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhH
Confidence 44566779887755443221 2234444443 446788999987732 21 122222110 1122222222211
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeCC-CcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg-~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. . |- ..+.| -|+.+.++.|..+. ..|++++++.. +.-..-+...|.+.|+.|+.+.-+.
T Consensus 131 ~------~------~~-~~~~P--cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--- 192 (286)
T PRK14175 131 Y------I------DE-QTFVP--CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--- 192 (286)
T ss_pred h------c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---
Confidence 1 1 21 12343 36777777766543 27899998855 5467778999999999887665321
Q ss_pred CCCCcHHHHHHcCCCCEEEEECcH
Q 022128 215 VHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
. .+.+.+.+.|+|+-+-+.
T Consensus 193 --~---~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 193 --K---DMASYLKDADVIVSAVGK 211 (286)
T ss_pred --h---hHHHHHhhCCEEEECCCC
Confidence 1 122234577887766654
No 215
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.24 E-value=46 Score=25.40 Aligned_cols=70 Identities=20% Similarity=0.035 Sum_probs=44.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--hHHHHHHHHHHH--HcCCCCceEEEEChh
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAWK--EAGTPNVRIGVVGAG 137 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS--~~av~~f~~~l~--~~~~~~~~i~aVG~~ 137 (302)
...++..|+++|+++..+.... +.+++.+.+.+ .++|.|.|++ ........+..+ +...++.++++-|+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-----~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-----PPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEECCCC-----CHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4568889999999988663322 12556666634 4789999976 333333333222 223468899999987
No 216
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=62.02 E-value=40 Score=28.21 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=41.4
Q ss_pred cHHHHHHhcccCC--CCCCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 163 TGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 163 ~~e~L~~~L~~~~--~~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
++...++.+.+.. ..+++++++...+ ....+...|.+.|++|. +..+.. +++.+.+...|+|+.+.++
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~---v~~r~~-----~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT---VCHSKT-----KNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE---EEECCc-----hhHHHHHhhCCEEEEcCCC
Confidence 3444444443332 2689999998766 46669999999998653 333321 2233345678887776655
No 217
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=62.01 E-value=1.7e+02 Score=29.09 Aligned_cols=219 Identities=12% Similarity=0.149 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEECh-
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA- 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG~- 136 (302)
.++..++...|++.|+++..+.. .....+++ .+..+...-+..++.+.....+.|++ .+.+.+.+--+|-
T Consensus 214 ~gD~~eik~lLe~~Gl~v~~~~~----gg~t~~ei----~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~ 285 (513)
T TIGR01861 214 QGDQEVMVDYFQRMGIQVLSTFT----GNGSYDDL----RGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFE 285 (513)
T ss_pred ccCHHHHHHHHHHCCCeEEEEeC----CCCCHHHH----HhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHH
Confidence 34678899999999999985442 11222333 35566666555566666667777765 3444332223563
Q ss_pred hhHHHHHHHhhccCCCCcee---ccCCCcc--HHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEEEeee
Q 022128 137 GTASIFEEVIQSSKCSLDVA---FSPSKAT--GKILASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~---~~p~~~~--~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~~vY 210 (302)
.|.+.|++...- -|+... ++|+... -..| +..... ..|+|+++..|....--+...|. +.|.++....+.
T Consensus 286 ~Td~~Lr~la~~--~g~~~~~e~~I~~e~~~~r~~L-d~~~~~-L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t~ 361 (513)
T TIGR01861 286 PLAASLRKVAMF--FGIEDEAQAIIDEETARWKPEL-DWYKER-LKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYSK 361 (513)
T ss_pred HHHHHHHHHHHH--hCCChhHhHhhHHHHHHHHHHH-HHHHHh-cCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEecc
Confidence 456666654210 043211 1222110 0111 111111 26899998887766777888888 699988444332
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeE-EecC--CC--Ch
Q 022128 211 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV-YYPT--HP--GL 285 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~-~v~~--~~--~~ 285 (302)
.....+.+...+.+ ..+.+++-..+.++ .. +.+.+. +..++.-|.+....++++|+.-+ .... .| ..
T Consensus 362 --~~~~~d~~~~~~~~-~~~~~~i~D~~~~e-~~-~~l~~~---~~Dllig~s~~~~~A~k~gIP~ld~~~~~~~p~~GY 433 (513)
T TIGR01861 362 --FGHQGDMEKGVARC-GEGALAIDDPNELE-GL-EAMEML---KPDIILTGKRPGEVSKKMRVPYLNAHAYHNGPYKGF 433 (513)
T ss_pred --CCCHHHHHHHHHhC-CCCcEEecCCCHHH-HH-HHHHhc---CCCEEEecCccchhHhhcCCCEEEccCCCCCCcchH
Confidence 21111122223323 34566666566555 33 333322 34566666667777888888742 2121 12 55
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
+++++.+.+..+
T Consensus 434 ~G~~~l~~~I~n 445 (513)
T TIGR01861 434 EGWVRFARDIYN 445 (513)
T ss_pred hhHHHHHHHHHH
Confidence 677776666543
No 218
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=61.72 E-value=1.6e+02 Score=28.48 Aligned_cols=225 Identities=14% Similarity=0.069 Sum_probs=110.9
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCh--HHHHHHHHHHHH
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKE 123 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IifTS~--~av~~f~~~l~~ 123 (302)
...+..++.+.|++.|+++..+|-+. ..+.. ...+++ +.+..+.+.-|..++ .....+.+.+++
T Consensus 166 ~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~-g~~~~~-i~~~~~A~lniv~~~~~~~g~~~A~~L~e 243 (429)
T cd03466 166 SPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSG-GTPISE-IKGMGGAKATIELGMFVDHGLSAGSYLEE 243 (429)
T ss_pred ChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCC-CCCHHH-HHhhccCcEEEEEccCccchHHHHHHHHH
Confidence 34567899999999999998877432 11111 112333 234555556555553 222333444443
Q ss_pred -cCCCCceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCccH--HHHHHhcccC-C-CCCCEEEEeCCCcchhhHHHH
Q 022128 124 -AGTPNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKN-G-KKKCTVLYPASAKASNEIEEG 196 (302)
Q Consensus 124 -~~~~~~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~--e~L~~~L~~~-~-~~~~~vL~~rg~~~~~~L~~~ 196 (302)
.+.+-+.+ +-+| ..|.+.+++.... -|.++ |+.... +.+.+.+.+. . ..|+|+.+..+....-.+.+.
T Consensus 244 ~~giP~~~~~~P~G~~~t~~~l~~l~~~--~g~~~---~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~~ 318 (429)
T cd03466 244 EFGIPNYRLPLPIGLRATDEFMSLLSKL--TGKPI---PEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITRF 318 (429)
T ss_pred HHCCCeeecCCCcChHHHHHHHHHHHHH--HCCCc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHHH
Confidence 34332222 2255 3455555554110 04321 221111 1122222221 1 157888887766666778999
Q ss_pred HHhCCCeeEEEeeeeeecCCCCcHHHHHH-cC--CCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcC
Q 022128 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-AL--SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLG 273 (302)
Q Consensus 197 L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~--~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G 273 (302)
|.+.|.++..+.+ ........+.++. .. ..+.+++..+.. . .+.+.+++. +..++.-+..-...++++|
T Consensus 319 L~elG~~~~~v~~---~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~-~-e~~~~l~~~---~~dliiG~s~~~~~a~~~~ 390 (429)
T cd03466 319 VLENGMVPVLIAT---GSESKKLKEKLEEDLKEYVEKCVILDGADF-F-DIESYAKEL---KIDVLIGNSYGRRIAEKLG 390 (429)
T ss_pred HHHCCCEEEEEEe---CCCChHHHHHHHHHHHhcCCceEEEeCCCH-H-HHHHHHHhc---CCCEEEECchhHHHHHHcC
Confidence 9999998733322 1111111222211 21 345555554332 2 244544432 2345555556666677788
Q ss_pred CCeEEec------------CCCChHHHHHHHHHHHH
Q 022128 274 LKNVYYP------------THPGLEGWVDSILEALR 297 (302)
Q Consensus 274 ~~~~~v~------------~~~~~~~ll~~i~~~~~ 297 (302)
+..+.+. .....++.+..+.+..+
T Consensus 391 ip~~~~~~P~~d~~~~~~~~~~Gy~G~~~l~~~i~n 426 (429)
T cd03466 391 IPLIRIGFPIHDRLGGQRIRSLGYEGSIELVDRITN 426 (429)
T ss_pred CCEEEecCCceeeeccCccCceechhHHHHHHHHHH
Confidence 8754331 11355677776666544
No 219
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=61.24 E-value=49 Score=27.84 Aligned_cols=76 Identities=21% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC--CCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~--~~~~i~aVG~~T 138 (302)
..+.+.+++.|.++............+...+.+.+.+-.+.+.|++.+......+.+.+.+.++ .++.+++.+...
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~~~ 220 (269)
T cd01391 143 EGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGSP 220 (269)
T ss_pred HHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHHHcCCCCCCCEEEeccccc
Confidence 3455666677755443322221111123444455533335788888887777778888888776 466666665443
No 220
>PRK06490 glutamine amidotransferase; Provisional
Probab=61.06 E-value=68 Score=28.38 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=53.3
Q ss_pred CCCeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-H-------HHHH
Q 022128 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-------SVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-v-------~~f~ 118 (302)
..++|++.+.. +....+.+.|++.|.++..+....-.+.++ .+.+||.+|+|-... + ....
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~---------~l~~~dgvii~Ggp~~~~d~~~wi~~~~ 76 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD---------TLEDHAGAVIFGGPMSANDPDDFIRREI 76 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC---------cccccCEEEEECCCCCCCCCchHHHHHH
Confidence 46788888743 456779999999999887654332111111 356789988884332 1 1112
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceec
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~ 157 (302)
+.+.+.-..+++++.|.-+- +.|...+ |-++.-
T Consensus 77 ~~i~~~~~~~~PvLGIC~G~-Qlla~al-----GG~V~~ 109 (239)
T PRK06490 77 DWISVPLKENKPFLGICLGA-QMLARHL-----GARVAP 109 (239)
T ss_pred HHHHHHHHCCCCEEEECHhH-HHHHHHc-----CCEeec
Confidence 22221111367887666655 4454454 665543
No 221
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=60.95 E-value=28 Score=28.98 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=44.9
Q ss_pred ccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
-|+.+.++.|..+. ..|++++++ |+..-..-|...|.+.|+.|+.+.-|. .... +...+.|+|+-..+.
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-----~~l~---~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-----KNLQ---EITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-----SSHH---HHHTTSSEEEE-SSS
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-----Cccc---ceeeeccEEeeeecc
Confidence 36777777776544 268888777 666677788999999999998877664 1112 223577888777654
No 222
>PRK15452 putative protease; Provisional
Probab=60.82 E-value=1.4e+02 Score=29.06 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHH
Q 022128 227 LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 292 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i 292 (302)
..+|.|++.++..++ .+.+..+.... .+...-+.-..+++.++++|+..+..+.+-+.+.|-+..
T Consensus 88 ~gvDgvIV~d~G~l~-~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 88 MKPDALIMSDPGLIM-MVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred CCCCEEEEcCHHHHH-HHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 368999999999998 77665433211 123344567889999999999999899999998877543
No 223
>PRK07308 flavodoxin; Validated
Probab=60.77 E-value=28 Score=27.98 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=43.3
Q ss_pred eEEEeCCCCChHHHH----HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHH
Q 022128 52 KVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLE 119 (302)
Q Consensus 52 ~IlitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--------av~~f~~ 119 (302)
.|+.....+..++++ +.|++.|+.+...++-.. + . ..+.++|.|+|-|+. .+..|++
T Consensus 5 ~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~------~-~----~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 5 KIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV------D-A----SDFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC------C-H----hHhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 455555444444444 555666776543322211 1 0 134678888887754 3566666
Q ss_pred HHHHcCCCCceEEEEChh
Q 022128 120 AWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~ 137 (302)
.+....+.+.+++++|-+
T Consensus 74 ~l~~~~l~~k~~~vfG~G 91 (146)
T PRK07308 74 DLADLDLSGKIYGVVGSG 91 (146)
T ss_pred HHhcCCCCCCEEEEEeeC
Confidence 666655677888887773
No 224
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=60.42 E-value=27 Score=29.04 Aligned_cols=70 Identities=10% Similarity=0.127 Sum_probs=39.0
Q ss_pred HHHHHHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHHHcCCCCceE
Q 022128 65 LIKALAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRI 131 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~l~~~d~IifTS~-------~av~~f~~~l~~~~~~~~~i 131 (302)
+.+.+++.|.++..+-+.+... ....+.+....+.+...|.|||.|| ..++.|++.+....+.+.++
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v 101 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVV 101 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEE
Confidence 3445566787776665543211 0012345555556678999999998 35566665543323445555
Q ss_pred EEE
Q 022128 132 GVV 134 (302)
Q Consensus 132 ~aV 134 (302)
..+
T Consensus 102 ~~~ 104 (171)
T TIGR03567 102 LPI 104 (171)
T ss_pred EEE
Confidence 433
No 225
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.05 E-value=95 Score=28.44 Aligned_cols=147 Identities=15% Similarity=0.114 Sum_probs=79.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+.+++.|+++..+-+-+.. ..+++.+.+. .....|.|++--|-- ++ .+++.+.- ...+++.-+-.|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (285)
T PRK14189 53 KVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGA 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhH
Confidence 344567779888765553221 2334444444 346688999887732 22 12222211 1112332222221
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
+- . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|...|+.|+.+.-.
T Consensus 130 -----l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--- 191 (285)
T PRK14189 130 -----LM-T------GQP-LFRP--CTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--- 191 (285)
T ss_pred -----hh-C------CCC-CCcC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---
Confidence 11 1 221 2344 36777777776554 268898888 56665777899999999998765321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECc
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
... +...+.+.|+|+...+
T Consensus 192 --t~~---l~~~~~~ADIVV~avG 210 (285)
T PRK14189 192 --TRD---LAAHTRQADIVVAAVG 210 (285)
T ss_pred --CCC---HHHHhhhCCEEEEcCC
Confidence 111 1122457788887776
No 226
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=59.75 E-value=1.2e+02 Score=26.30 Aligned_cols=150 Identities=17% Similarity=0.079 Sum_probs=76.9
Q ss_pred CccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCC
Q 022128 102 IFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKC 179 (302)
Q Consensus 102 ~~d~IifTS~-~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~ 179 (302)
+.+.||.... ..+....+.+.+ .+++++..+.... .+.... . ..-..+.|. ......+++.+.... ..+
T Consensus 66 ~v~~iig~~~~~~~~~~~~~~~~---~~ip~i~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 136 (298)
T cd06268 66 GVDAVIGPLSSGVALAAAPVAEE---AGVPLISPGATSP-ALTGKG---N-PYVFRTAPSDAQQAAALADYLAEKG-KVK 136 (298)
T ss_pred CceEEEcCCcchhHHhhHHHHHh---CCCcEEccCCCCc-ccccCC---C-ceEEEcccCcHHHHHHHHHHHHHhc-CCC
Confidence 5788776543 233444555544 3566766655432 221110 0 111112232 233455656665443 246
Q ss_pred EEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc-HHHHHHHHHhhhcc
Q 022128 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSSWVNLISDT 251 (302)
Q Consensus 180 ~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~-s~v~~~~~~~l~~~ 251 (302)
+|.++.++.. .+.+.+.+++.|+++.....|.... .........+ .+.|+|++.+. ..+. .+++.+.+.
T Consensus 137 ~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~-~~~~~~~~~ 213 (298)
T cd06268 137 KVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKAAGPDAVFLAGYGGDAA-LFLKQAREA 213 (298)
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHhcCCCEEEEccccchHH-HHHHHHHHc
Confidence 7877765432 3566778889998876655554321 1222222222 45787777765 5666 677766654
Q ss_pred cCCCceEEEECHH
Q 022128 252 EQWSNSVACIGET 264 (302)
Q Consensus 252 ~~~~~~i~~IG~~ 264 (302)
.. +.+++..+..
T Consensus 214 g~-~~~~~~~~~~ 225 (298)
T cd06268 214 GL-KVPIVGGDGA 225 (298)
T ss_pred CC-CCcEEecCcc
Confidence 32 4566655443
No 227
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=59.40 E-value=16 Score=30.51 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCCEEEEeCCCcchh----hHHHHHHhCCCeeEEEeeeee
Q 022128 176 KKKCTVLYPASAKASN----EIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 176 ~~~~~vL~~rg~~~~~----~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.+.++|++++|.+.+. .+...|.++|++|+.+.++..
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~ 63 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPP 63 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 3568999999986543 577889999999866444443
No 228
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=59.39 E-value=1.2e+02 Score=26.52 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=44.4
Q ss_pred CCCCCeEEEe----CCCCChHHHHHH----HHhCCCcEEEeceEEeeeCCC-----chHHHHHHhcCCCccEEEEeChH-
Q 022128 47 SNSNPKVVVT----RERGKNGKLIKA----LAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSPE- 112 (302)
Q Consensus 47 ~l~g~~Ilit----R~~~~~~~l~~~----L~~~G~~v~~~P~~~~~~~~~-----~~~l~~~l~~l~~~d~IifTS~~- 112 (302)
+.+.++|++. |+...+..+++. +.+.|+++..+.+-+ .|..+ .......-+.+...|++||.||.
T Consensus 23 ~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~-lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY 101 (219)
T TIGR02690 23 KPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPG-LPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER 101 (219)
T ss_pred CCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCccc-CCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc
Confidence 3444566543 444444444443 444688876665322 22221 11222222234678999999982
Q ss_pred ------HHHHHHHHHHHc-----CCCCceEEEEChh
Q 022128 113 ------AGSVFLEAWKEA-----GTPNVRIGVVGAG 137 (302)
Q Consensus 113 ------av~~f~~~l~~~-----~~~~~~i~aVG~~ 137 (302)
+.+.+++.+... .+.++++.++|..
T Consensus 102 n~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 102 HGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred ccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC
Confidence 233333333221 2456677766643
No 229
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=59.19 E-value=1.4e+02 Score=26.97 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred CCccEEEEeC-hHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCc-e-eccCC-CccHHHHHHhcccCCC
Q 022128 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD-V-AFSPS-KATGKILASELPKNGK 176 (302)
Q Consensus 101 ~~~d~IifTS-~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~-~-~~~p~-~~~~e~L~~~L~~~~~ 176 (302)
++.+.||... ..........+.+ .+++++..+..+. .+... +.+ + .+.+. ......+++.+.+..
T Consensus 67 ~~v~avig~~~s~~~~~~~~~~~~---~~iP~i~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~g- 135 (336)
T cd06326 67 DKVFALFGYVGTPTTAAALPLLEE---AGVPLVGPFTGAS-SLRDP------PDRNVFNVRASYADEIAAIVRHLVTLG- 135 (336)
T ss_pred cCcEEEEeCCCchhHHHHHHHHHH---cCCeEEEecCCcH-HhcCC------CCCceEEeCCChHHHHHHHHHHHHHhC-
Confidence 3688888642 2223333444444 3567777654432 22211 111 1 11222 223445666665543
Q ss_pred CCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc-HHHHHHHHHhh
Q 022128 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSSWVNLI 248 (302)
Q Consensus 177 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~-s~v~~~~~~~l 248 (302)
.++|.++..+. ....+.+.+++.|..+.....|... ..+....+..+ ..+|+|++++. ..+- .+++.+
T Consensus 136 -~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~-~~i~~~ 211 (336)
T cd06326 136 -LKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN--TADVAAAVAQLAAARPQAVIMVGAYKAAA-AFIRAL 211 (336)
T ss_pred -CceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC--cccHHHHHHHHHhcCCCEEEEEcCcHHHH-HHHHHH
Confidence 46777774432 2356788899999887555445432 11222222222 46899999875 4566 677777
Q ss_pred hcccCCCceEEEEC
Q 022128 249 SDTEQWSNSVACIG 262 (302)
Q Consensus 249 ~~~~~~~~~i~~IG 262 (302)
.+... +.+++..+
T Consensus 212 ~~~G~-~~~~~~~~ 224 (336)
T cd06326 212 RKAGG-GAQFYNLS 224 (336)
T ss_pred HhcCC-CCcEEEEe
Confidence 76432 44544433
No 230
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=58.95 E-value=1.5e+02 Score=27.31 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=38.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC----cHHHHHHcCCCCEEEEECcHHHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV----DQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~----~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
.|+++.++.-..-...+.+.++.-|.+|. .|.+...... ...+-+.+...|+|++.-|.+-+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~---~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVV---YYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEE---EECCCccccccCceeecHHHHhhcCCEEEEeCCCCch
Confidence 57888888766656678899998888764 4443221110 11122224678999998886644
No 231
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=58.94 E-value=67 Score=27.51 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=44.9
Q ss_pred CCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHH
Q 022128 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSW 244 (302)
Q Consensus 177 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~ 244 (302)
.+.+|+++.... ..+...+.++..|+++..+.+.+. ...++..+.+...|+|+|+-.++.+ ..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~----~~~~~~~~~l~~ad~I~~~GG~~~~-~~ 95 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT----ANDPDVVARLLEADGIFVGGGNQLR-LL 95 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC----CCCHHHHHHHhhCCEEEEcCCcHHH-HH
Confidence 456887775443 345678889999999988887665 1223344556789999999999887 54
No 232
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=58.30 E-value=70 Score=27.84 Aligned_cols=80 Identities=19% Similarity=0.064 Sum_probs=49.5
Q ss_pred CeEEEeCCCCCh--HHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------H
Q 022128 51 PKVVVTRERGKN--GKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------S 115 (302)
Q Consensus 51 ~~IlitR~~~~~--~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av------------~ 115 (302)
|+|+|.+-.+.+ .++...|+ ..|+++..++.-+ . .+.++|+||+...... .
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~-------~-------~l~~~D~lvipGG~~~~d~l~~~~~~~~~ 66 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE-------T-------DLDGVDAVVLPGGFSYGDYLRCGAIAAFS 66 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc-------C-------CCCCCCEEEECCCCchhhhhccchhhhch
Confidence 467777655544 44788998 8899887664311 1 3567899999875321 1
Q ss_pred HHHHHHHHcCCCCceEEEEChhhHHHHHHH
Q 022128 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
.+.+.+++..-.+.++++|..+. +.|.+.
T Consensus 67 ~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~ 95 (219)
T PRK03619 67 PIMKAVKEFAEKGKPVLGICNGF-QILTEA 95 (219)
T ss_pred HHHHHHHHHHHCCCEEEEECHHH-HHHHHc
Confidence 12222222222477899998877 677776
No 233
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=58.13 E-value=26 Score=31.68 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEee-----eCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~-----~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
-.|.+|+++|+...+ ....+...|++++.++.-... ..-+.+.+++.+..-.+...|++|+++
T Consensus 97 ~~gd~Vlv~~~~h~s--~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~ 164 (294)
T cd00615 97 GPGDKILIDRNCHKS--VINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPT 164 (294)
T ss_pred CCCCEEEEeCCchHH--HHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCC
Confidence 357899999986533 455677789999988764221 122456777777443567888999875
No 234
>PRK08250 glutamine amidotransferase; Provisional
Probab=58.07 E-value=69 Score=28.24 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=51.7
Q ss_pred CeEEEeCC--CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHH------H----
Q 022128 51 PKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSV------F---- 117 (302)
Q Consensus 51 ~~IlitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-av~~------f---- 117 (302)
|+|++.+. -+....+...+++.|+++....+++-.+.+ ..+.+||.||++-.. .+.. +
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p---------~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~ 71 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALP---------ENADGFDLLIVMGGPQSPRTTREECPYFDSK 71 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCC---------CCccccCEEEECCCCCChhhccccccccchH
Confidence 56777764 346778889999999887765544322111 134679999997552 2110 1
Q ss_pred --HHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCcee
Q 022128 118 --LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (302)
Q Consensus 118 --~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~ 156 (302)
.+.+.+.--.+++++.|--+- +.+..++ |-++.
T Consensus 72 ~~~~~i~~~~~~~~PvlGIC~G~-Qlla~al-----Gg~V~ 106 (235)
T PRK08250 72 AEQRLINQAIKAGKAVIGVCLGA-QLIGEAL-----GAKYE 106 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEChhH-HHHHHHh-----Cceec
Confidence 111222111467887776665 4455554 65553
No 235
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.98 E-value=1.3e+02 Score=27.49 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=70.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
-.+..++.|+++..+-+-+.. ..+++.+.+. ...+.|.|++--|---..-.+.+.+.-.+..-+=.+.+.-...
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (284)
T PRK14190 53 KKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGR 129 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHH
Confidence 345567779888765543322 2234444443 4456889998877321111111111111111111121211111
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEe
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
| +. |-. .+.| -|+.+..+.|..+. ..|++++++ |+.....-|...|..+|+.|+.+.
T Consensus 130 l--~~-----~~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ch 189 (284)
T PRK14190 130 M--ML-----GQD-TFLP--CTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCH 189 (284)
T ss_pred H--hc-----CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 1 11 322 2444 46778777776554 268888777 777777888999999999997654
No 236
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=57.88 E-value=96 Score=26.14 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=48.3
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-ChHH---HHHHHHHHHHcC
Q 022128 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEA---GSVFLEAWKEAG 125 (302)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT-S~~a---v~~f~~~l~~~~ 125 (302)
|+||+....+ ....+.+.|++.|+++..++..+.. .+ .+..+|.||++ ++.. .....+.+++ -
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~----~~-------~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~ 69 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD----LD-------EVENFSHILISPGPDVPRAYPQLFAMLER-Y 69 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC----hh-------HhccCCEEEECCCCCChHHhhHHHHHHHH-h
Confidence 6888888543 4556899999999988877654321 11 23568999988 4442 2222233332 1
Q ss_pred CCCceEEEEChhhHHHHHHHh
Q 022128 126 TPNVRIGVVGAGTASIFEEVI 146 (302)
Q Consensus 126 ~~~~~i~aVG~~Ta~~l~~~~ 146 (302)
..++++..|--+- +.|...+
T Consensus 70 ~~~~PiLGIClG~-Qlla~~~ 89 (190)
T PRK06895 70 HQHKSILGVCLGH-QTLCEFF 89 (190)
T ss_pred cCCCCEEEEcHHH-HHHHHHh
Confidence 2366776444433 4555554
No 237
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=57.72 E-value=55 Score=29.82 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=41.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGV 133 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~a 133 (302)
..+.+.++++|+++.....+... ..|.......+.. .+.|.|++.+.. ....|++++.+.+++...+..
T Consensus 151 ~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~i~~-~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~ 220 (341)
T cd06341 151 ALLARSLAAAGVSVAGIVVITAT-APDPTPQAQQAAA-AGADAIITVLDAAVCASVLKAVRAAGLTPKVVLS 220 (341)
T ss_pred HHHHHHHHHcCCccccccccCCC-CCCHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHHcCCCCCEEEe
Confidence 44677888889887654444322 2344333233322 468999888766 666778888887764333333
No 238
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=57.55 E-value=39 Score=27.38 Aligned_cols=70 Identities=24% Similarity=0.173 Sum_probs=46.8
Q ss_pred ccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
-+.+++.+.|..+. ..|++++++ |+.....-|...|.+.|+.|+.+.-.. ...++ ...+.|+|+-..+.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-----~~l~~---~v~~ADIVvsAtg~ 81 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-----IQLQS---KVHDADVVVVGSPK 81 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-----cCHHH---HHhhCCEEEEecCC
Confidence 35677766665543 268888887 667778889999999998886665322 11122 23577888777766
Q ss_pred H
Q 022128 239 A 239 (302)
Q Consensus 239 ~ 239 (302)
.
T Consensus 82 ~ 82 (140)
T cd05212 82 P 82 (140)
T ss_pred C
Confidence 5
No 239
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=57.21 E-value=1.7e+02 Score=27.79 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=50.8
Q ss_pred hHHHHHH--hCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHH-------HHHHHHHhhhcccCCCceEEEEC
Q 022128 192 EIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-------VRSSWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 192 ~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~-------v~~~~~~~l~~~~~~~~~i~~IG 262 (302)
.+.+.++ ..|++| .+|... .....++...+.+.|.|+|-||.- +. .|++.+......+.++.++|
T Consensus 267 ~ia~g~~~~~~g~~v---~~~~~~--~~~~~~i~~~~~~~d~ii~GspT~~~~~~~~~~-~~l~~l~~~~~~~K~~a~FG 340 (394)
T PRK11921 267 AIAEGIKKANKDVTV---KLYNSA--KSDKNDIITEVFKSKAILVGSSTINRGILSSTA-AILEEIKGLGFKNKKAAAFG 340 (394)
T ss_pred HHHHHHhhcCCCCeE---EEEECC--CCCHHHHHHHHHhCCEEEEECCCcCccccHHHH-HHHHHhhccCcCCCEEEEEe
Confidence 4455555 455555 344332 122334444455789999999873 34 45554443333345555555
Q ss_pred H---------HHHHHHHHcCCCe----EEecCCCChHHHHHHHHHH
Q 022128 263 E---------TTASAAKRLGLKN----VYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 263 ~---------~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~ 295 (302)
. ...+.+++.|++. +.+-..|+.++ ++.++++
T Consensus 341 sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~-~~~~~~~ 385 (394)
T PRK11921 341 SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEA-LDRCRSF 385 (394)
T ss_pred cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHH-HHHHHHH
Confidence 3 2345567788874 23344566555 4444443
No 240
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=56.96 E-value=91 Score=26.01 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred EEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-H--------HHHHHHHHH
Q 022128 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G--------SVFLEAWKE 123 (302)
Q Consensus 53 IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-v--------~~f~~~l~~ 123 (302)
|+.+++......+.+.|++.|...+.+.+++..... . ...+.++|.||++.... + +...+.++.
T Consensus 4 il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~ 76 (188)
T cd01741 4 ILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGE-L------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQ 76 (188)
T ss_pred EEECCCCCCcchHHHHHHhcCCCCceEEEEecCCCC-C------CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHH
Confidence 344454444688999999999522333333332111 1 12467899999997643 1 112222222
Q ss_pred cCCCCceEEEEChhhHHHHHHHh
Q 022128 124 AGTPNVRIGVVGAGTASIFEEVI 146 (302)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~l~~~~ 146 (302)
.--.+.+++.|.-+- +.|-..+
T Consensus 77 ~~~~~~pilgiC~G~-q~l~~~l 98 (188)
T cd01741 77 ALAAGKPVLGICLGH-QLLARAL 98 (188)
T ss_pred HHHCCCCEEEECccH-HHHHHHh
Confidence 111357777666655 4444444
No 241
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.94 E-value=61 Score=30.50 Aligned_cols=48 Identities=15% Similarity=0.007 Sum_probs=36.1
Q ss_pred ccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEee
Q 022128 162 ATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
-|+.+.++.|..+.. .|++++++ |++....-|...|.++|+.|+.+.-
T Consensus 196 CTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs 246 (345)
T PLN02897 196 CTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHA 246 (345)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcC
Confidence 467777777765532 68888777 7777778889999999999866543
No 242
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=56.89 E-value=2.1e+02 Score=28.39 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=79.9
Q ss_pred CChHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-h
Q 022128 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG-~ 136 (302)
.+..++.+.|+..|+++..+ |. ....+++ .++.+.+.-|..++..-....+.|++ .+.+-+...=+| .
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~-----g~s~~dl----~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~ 245 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPW-----GASIADL----ARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVN 245 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CCCHHHH----HhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHH
Confidence 46689999999999999765 52 1222333 35566666666677655555666644 355544445666 5
Q ss_pred hhHHHHHHHhhc-cCCCCceeccCCCccHHH---------HHHhcccCCCCCCEEEEeCCCcchhhHHHHHH-hCCCeeE
Q 022128 137 GTASIFEEVIQS-SKCSLDVAFSPSKATGKI---------LASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVV 205 (302)
Q Consensus 137 ~Ta~~l~~~~~~-~~~G~~~~~~p~~~~~e~---------L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~ 205 (302)
.|.+.|++.... +..|+++.. +.+-.+. +...+......|+|+.+..+..-.-.+...|. +.|++|.
T Consensus 246 ~T~~fL~~l~~~~~~~g~~~~~--e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElG~~vv 323 (511)
T TIGR01278 246 ATRRFIREIAALLNQAGADPYY--ESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILARELGIHIV 323 (511)
T ss_pred HHHHHHHHHHHHHhhcCCCCcH--HHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhCCCEEE
Confidence 677777666210 001332110 0110000 00011111125789998887777777888897 8999986
Q ss_pred EEeeee
Q 022128 206 RLNTYT 211 (302)
Q Consensus 206 ~~~vY~ 211 (302)
..-+|.
T Consensus 324 ~~gt~~ 329 (511)
T TIGR01278 324 GAGTYC 329 (511)
T ss_pred ecCCch
Confidence 655554
No 243
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=56.86 E-value=1.2e+02 Score=27.60 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=52.3
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceE
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSV 258 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i 258 (302)
-+++++.|+...+.|.+.+.+.|. .....|. ..+ +.+.+...|+++..|. -. .+++.+.. ++++
T Consensus 210 ~~~~~~~g~~~~~~l~~~~~~~~l--~~~v~~~----~~~---~~~~l~~ad~~v~~~g--~~-~l~Ea~~~----g~Pv 273 (348)
T TIGR01133 210 IQIVHQTGKNDLEKVKNVYQELGI--EAIVTFI----DEN---MAAAYAAADLVISRAG--AS-TVAELAAA----GVPA 273 (348)
T ss_pred cEEEEECCcchHHHHHHHHhhCCc--eEEecCc----ccC---HHHHHHhCCEEEECCC--hh-HHHHHHHc----CCCE
Confidence 355556666555556655655553 1122222 101 1222346677776554 22 34344432 4566
Q ss_pred EEEC------H--HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 259 ACIG------E--TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 259 ~~IG------~--~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+++. . ..++.+.+.|.-..+.+...+.++|.++|.+.+.
T Consensus 274 v~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 274 ILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred EEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 6542 1 1345676655443322333479999999987764
No 244
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=56.81 E-value=57 Score=31.20 Aligned_cols=61 Identities=26% Similarity=0.130 Sum_probs=38.0
Q ss_pred cCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEE
Q 022128 173 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVA 235 (302)
Q Consensus 173 ~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivft 235 (302)
+...+|.+||++....=..-+.+.++..|++|..+.+=--.+. +++++.+.+ .+++.|.++
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v--~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAV--DPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCC--CHHHHHHHHhcCCCccEEEEE
Confidence 3334678999988777777889999999988866554322221 223333333 356666664
No 245
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=56.79 E-value=82 Score=27.15 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=44.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
.-+.+.++++|.+....-.+......+ .+.+.+.|..-.++|+|+.++...+..+.+++++.++ +++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 137 AGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred HHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 445667777775432111111110001 2334555543356899999998878778888888775 36777777765
Q ss_pred h
Q 022128 138 T 138 (302)
Q Consensus 138 T 138 (302)
.
T Consensus 217 ~ 217 (268)
T cd06289 217 A 217 (268)
T ss_pred h
Confidence 4
No 246
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=56.32 E-value=9.4 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCC
Q 022128 238 SAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGL 274 (302)
Q Consensus 238 s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~ 274 (302)
+.+. .|+.-++-. .+.-||++|++.|+++|+
T Consensus 2 e~v~-~~l~~lpi~-----~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 2 EDVP-EFLWPLPIR-----KFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp HHHH-HHHHCSBGG-----GSTTS-HHHHHHHHCTT-
T ss_pred hHHH-HHHhcCCHH-----hhCCccHHHHHHHHHccC
Confidence 4455 555544322 344699999999999885
No 247
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.12 E-value=70 Score=29.22 Aligned_cols=146 Identities=18% Similarity=0.099 Sum_probs=78.1
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. ...+.|.|++--|-- ++ ..++.+.. ...+++.-+-.|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g-- 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPSTI---SQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG-- 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh--
Confidence 34566779887655432221 2234444443 446789999988842 21 12222111 112233222233
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.+. . |- ..+.| -|+.+.++.|..+.. .|++++++ ||.....-|...|.++|+.|+.+.-+.
T Consensus 128 ---~l~-~------g~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--- 191 (281)
T PRK14183 128 ---RLV-T------GL-DGFVP--CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--- 191 (281)
T ss_pred ---HHh-c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---
Confidence 111 1 32 22444 367888777775542 68898888 666777778999999999886443221
Q ss_pred CCCCcHHHHHHcCCCCEEEEECc
Q 022128 215 VHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
....+ ...+.|+|+..-+
T Consensus 192 --~~l~~---~~~~ADIvV~AvG 209 (281)
T PRK14183 192 --KDLKA---HTKKADIVIVGVG 209 (281)
T ss_pred --cCHHH---HHhhCCEEEEecC
Confidence 11122 2346687776554
No 248
>PRK04017 hypothetical protein; Provisional
Probab=55.93 E-value=43 Score=26.99 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEe-CCC----c
Q 022128 115 SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYP-ASA----K 188 (302)
Q Consensus 115 ~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~-rg~----~ 188 (302)
..+.+.|.+..-.+..+++=|+.=.++|++. |+..++... ...-..+.+.+.. .++.|+++ -.+ .
T Consensus 10 ~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l------Gv~~~iI~t~g~~~~~~~e~ia~---~~r~VIILTD~D~~Gek 80 (132)
T PRK04017 10 EEIIEELKEFSEAGAPIIVEGKRDVESLRKL------GVEGEIIKVSRTPLAEIAELIAS---RGKEVIILTDFDRKGEE 80 (132)
T ss_pred HHHHHHHHHhcCCCCEEEEeCccHHHHHHHc------CCCccEEEECCeecchHHHHHHh---cCCeEEEEECCCcchHH
Confidence 3445555555545678889999989999999 886544322 2111222233322 23445444 433 4
Q ss_pred chhhHHHHHHhCCCee
Q 022128 189 ASNEIEEGLSNRGFEV 204 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v 204 (302)
-+..+.+.|+..|+.|
T Consensus 81 Ir~~l~~~l~~~G~~v 96 (132)
T PRK04017 81 LAKKLSEYLQGYGIKV 96 (132)
T ss_pred HHHHHHHHHHhCCCCc
Confidence 4556777788888766
No 249
>PRK05569 flavodoxin; Provisional
Probab=55.85 E-value=29 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=25.9
Q ss_pred cCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEEECh
Q 022128 99 ADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 99 ~l~~~d~IifTS~~---------av~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
.+.++|.|+|-||. .+..|++.+......+.+++++|-
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t 91 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGS 91 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeC
Confidence 34679999999984 256666665544446778887773
No 250
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.67 E-value=77 Score=24.08 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=47.9
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC--cHHHHHHHHHhhhccc--CCCceEEEEC
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSSWVNLISDTE--QWSNSVACIG 262 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS--~s~v~~~~~~~l~~~~--~~~~~i~~IG 262 (302)
+-..+...|++.|++|.-+.+... .+++.+.+ .++|+|.|++ ..... ...+..+..+ ..+.++++-|
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~------~~~l~~~~~~~~pd~V~iS~~~~~~~~-~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVP------PEELVEALRAERPDVVGISVSMTPNLP-EAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-------HHHHHHHHHHTTCSEEEEEESSSTHHH-HHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEECCCCC------HHHHHHHHhcCCCcEEEEEccCcCcHH-HHHHHHHHHHhcCCCCEEEEEC
Confidence 455788999999998765543221 12333322 5899999976 44444 4444443321 2357788778
Q ss_pred HH-HH---HHHHH-cCCCeEEe
Q 022128 263 ET-TA---SAAKR-LGLKNVYY 279 (302)
Q Consensus 263 ~~-Ta---~~l~~-~G~~~~~v 279 (302)
+. |. ..+++ .|+..++.
T Consensus 89 ~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 89 PHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSSGHHHHHHHHHHHTSEEEEE
T ss_pred CchhcChHHHhccCcCcceecC
Confidence 65 22 22434 67775444
No 251
>PRK06849 hypothetical protein; Provisional
Probab=55.56 E-value=70 Score=30.21 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=53.1
Q ss_pred CCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEE--------------eeeCC--Cc----hHHHHHHhcCCCccEEE
Q 022128 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ--------------HAQGP--DT----DRLSSVLNADTIFDWII 107 (302)
Q Consensus 49 ~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~--------------~~~~~--~~----~~l~~~l~~l~~~d~Ii 107 (302)
.+|+||||-... ..-.+++.|.++|++|+.+-.-. ..+.+ +. +.|.+.+ +-.+.|.||
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~-~~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIV-QRENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHH-HHcCCCEEE
Confidence 478999998664 35789999999999998763321 12111 22 2233333 225689999
Q ss_pred EeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 108 ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 108 fTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
=|+-.. .+.....+.--+..++...+..+.+.
T Consensus 82 P~~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~~ 113 (389)
T PRK06849 82 PTCEEV--FYLSHAKEELSAYCEVLHFDFELLLL 113 (389)
T ss_pred ECChHH--HhHHhhhhhhcCCcEEEcCCHHHHHH
Confidence 888653 33333332212356666666665544
No 252
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=55.19 E-value=54 Score=32.33 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeCCCC-----------------ChHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~-----------------~~~~l~~~L~~~G~~v~~~ 79 (302)
+++.|++||||-... ..-.+++.+..+|++|..+
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI 302 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLI 302 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEE
Confidence 469999999997542 1356888889999999876
No 253
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=54.93 E-value=1.6e+02 Score=26.44 Aligned_cols=177 Identities=8% Similarity=0.070 Sum_probs=89.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChh
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.+.+.+.+++.|++++..+.- .+.+...+.++.+ .+.|+||+.+.. .....++.+.+ .+++++.++..
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~-----~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~---~~iPvV~~d~~ 88 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSAN-----GNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD---EGIKVVAYDRL 88 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH---CCCeEEEecCc
Confidence 346777888999988765321 1222222233222 578999998753 33444555544 36789999865
Q ss_pred hHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC----CCeeE
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVV 205 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~----G~~v~ 205 (302)
... . .....+... ...+..+++.|.+... .++++++.|.... .-+.+.+++. ++.+.
T Consensus 89 ~~~----~------~~~~~V~~d~~~~g~~~~~~L~~~g~-~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~ 157 (302)
T TIGR02634 89 IND----A------DIDFYLSFDNEKVGEMQARAVLEAAP-KGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIV 157 (302)
T ss_pred CCC----C------CccEEEecCHHHHHHHHHHHHHhhCC-CCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEe
Confidence 311 1 111112222 2334455566655432 2367777665332 1223334432 12221
Q ss_pred EEeeeeeecCCCCc---HHHHHH-c----CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEEC
Q 022128 206 RLNTYTTEPVHHVD---QTVLKQ-A----LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIG 262 (302)
Q Consensus 206 ~~~vY~~~~~~~~~---~~~~~~-~----~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG 262 (302)
. ..|. ..... .+..+. + ..+++|+..+-..+. ..++.+.+... .++.++.+.
T Consensus 158 ~-~~~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~~D~~A~-g~~~al~~~g~~~di~Vvg~d 218 (302)
T TIGR02634 158 G-DQWV---DGWLPENALRIMENALTANDNKVDAVVASNDATAG-GAIQALTAQGLAGKVPISGQD 218 (302)
T ss_pred c-CcCC---CCCCHHHHHHHHHHHHHhCCCCccEEEECCCchHH-HHHHHHHHCCCCCCeEEEcCC
Confidence 1 1111 11111 112222 2 247999998888787 67777766432 346677775
No 254
>PF11731 Cdd1: Pathogenicity locus; InterPro: IPR021725 Cdd1 is expressed as part of the pathogenicity locus operon in several different orders of bacteria []. Many members of the family are annotated as being putative mitomycin resistance proteins but this could not be confirmed.
Probab=53.99 E-value=13 Score=28.09 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=32.4
Q ss_pred EEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHH
Q 022128 258 VACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 258 i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
+=-||+.+++-|..+|+..+.--...+.+.|-+.+.+..
T Consensus 17 iP~IG~a~a~DL~~LGi~s~~~L~g~dP~~Ly~~lc~~~ 55 (93)
T PF11731_consen 17 IPNIGKATAEDLRLLGIRSPADLKGRDPEELYERLCALT 55 (93)
T ss_pred CCCccHHHHHHHHHcCCCCHHHHhCCCHHHHHHHHHHHc
Confidence 346999999999999999765567789999998887754
No 255
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=53.99 E-value=25 Score=27.96 Aligned_cols=84 Identities=12% Similarity=0.155 Sum_probs=52.1
Q ss_pred CEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhh
Q 022128 179 CTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 179 ~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~ 249 (302)
++|+++.+.... .-+.+.+++.|..+....+................+ ..+|+|+..+...+- .++..+.
T Consensus 10 r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~~~~~~a~-~~~~~l~ 88 (160)
T PF13377_consen 10 RRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIICSNDRLAL-GVLRALR 88 (160)
T ss_dssp SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEESSHHHHH-HHHHHHH
T ss_pred CeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEEcCHHHHH-HHHHHHH
Confidence 567777754432 236678889998865554443322111111111111 267999999999999 8888888
Q ss_pred ccc---CCCceEEEECH
Q 022128 250 DTE---QWSNSVACIGE 263 (302)
Q Consensus 250 ~~~---~~~~~i~~IG~ 263 (302)
+.+ ..++.+++++.
T Consensus 89 ~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 89 ELGIRVPQDISVVSFDD 105 (160)
T ss_dssp HTTSCTTTTSEEEEESS
T ss_pred HcCCcccccccEEEecC
Confidence 754 24688999985
No 256
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=53.82 E-value=2e+02 Score=27.27 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=79.5
Q ss_pred EeChHHHHHHHHHHHHcCCCCceEE-EEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCC
Q 022128 108 ITSPEAGSVFLEAWKEAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (302)
Q Consensus 108 fTS~~av~~f~~~l~~~~~~~~~i~-aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg 186 (302)
|-.+..++.+.+.+.+..-+.+++. +-|..|. ++-++ |++. +.|+.- +.+. .+|++|.+.-.
T Consensus 7 ~r~~~~~~~l~~~i~~~~~r~~~iMeVCGtHt~-aI~r~------Gir~-lLP~~i------elis---GPGCPVCVtp~ 69 (364)
T PRK15062 7 FRDPELARALLEEIRKLATRPLRIMEVCGGHTH-AIFRY------GLRS-LLPENI------ELIH---GPGCPVCVTPM 69 (364)
T ss_pred hcCHHHHHHHHHHHHHhcCCCceEEEeCCCchH-HHHHh------ChHh-hCCCCc------EEec---CCCCCcEeCcH
Confidence 5667778888887766532457775 6678884 55667 8875 444431 2222 26788877654
Q ss_pred CcchhhHHHHHHhC-CCeeEEEeeeeeecCCCCcHHHHHH-cCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEEC--
Q 022128 187 AKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIG-- 262 (302)
Q Consensus 187 ~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG-- 262 (302)
..-...+ .|... |..+..+ =++--.+-....+.+. ....|+=+++||..+- .+.+..+ ...+..++||
T Consensus 70 ~~ID~ai--~La~~~~vi~~Tf--GDmlRVPGs~~SL~~ara~GadVriVYSpldAl-~iA~~nP---~k~vVF~avGFE 141 (364)
T PRK15062 70 GRIDAAI--ELASRPGVILCTF--GDMLRVPGSKGSLLEAKAEGADVRIVYSPLDAL-KIARENP---DKEVVFFAIGFE 141 (364)
T ss_pred HHHHHHH--HHhCCCCeEEEec--cccccCCCCcCCHHHHHhCCCCEEEEeCHHHHH-HHHHHCC---CCeEEEEecCch
Confidence 4333222 23322 3222111 1222222222222222 3578899999998777 4544332 2346677777
Q ss_pred ---HHHHHHHHH---cCCCeE
Q 022128 263 ---ETTASAAKR---LGLKNV 277 (302)
Q Consensus 263 ---~~Ta~~l~~---~G~~~~ 277 (302)
|.||..+.+ .|+++.
T Consensus 142 TTaP~~A~~i~~A~~~~~~Nf 162 (364)
T PRK15062 142 TTAPATAATLLQAKAEGLKNF 162 (364)
T ss_pred hccHHHHHHHHHHHHcCCCCE
Confidence 666777655 788764
No 257
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=53.76 E-value=71 Score=27.57 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEE
Q 022128 177 KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 177 ~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
.|++++++ ||+....-|...|.+.|+.|+.+
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 67888777 77888888999999999999876
No 258
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.60 E-value=1e+02 Score=29.74 Aligned_cols=214 Identities=16% Similarity=0.187 Sum_probs=110.5
Q ss_pred CChHHHHHHHHhCCCcEEEeceEE----------eeeC-CCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCC
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQ----------HAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~----------~~~~-~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~ 127 (302)
.+-.++.+.|++.|+++..+|-+. ..+. .....+++ +.+..+...-|..++.+ ..+.+.|++ .+.+
T Consensus 171 ~D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~lee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~GiP 248 (417)
T cd01966 171 GDVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLED-IRQMGRSAATLAIGESM-RKAAEALEERTGVP 248 (417)
T ss_pred HHHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHH-HHhhccCeEEEEECHHH-HHHHHHHHHHHCCC
Confidence 466889999999999999887542 1000 00112332 23556666666667765 566666664 3443
Q ss_pred CceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 128 NVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 128 ~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
-+.. .-+|- .|.+.|++...- -|..+ |+... -+.+.+.+.+.. ..|+|+.+..+..-.--+.+.|.+.|
T Consensus 249 ~~~~~~p~G~~~T~~~L~~la~~--~g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG 323 (417)
T cd01966 249 YYVFPSLTGLEAVDALIATLAKL--SGRPV---PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMG 323 (417)
T ss_pred eeecCCCcchHHHHHHHHHHHHH--HCCCc---CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCC
Confidence 2222 22564 566666655210 04332 32211 112334443211 15788877766555667889999999
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEe--
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY-- 279 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v-- 279 (302)
.++..+.+....+ + .+.+ ..+.++..-...++ +.+.+ ..++.-|..-...++++|..-+.+
T Consensus 324 ~~~~~~~~~~~~~------~-~~~~-~~~~~~~~D~~~~e----~~~~~-----~dllig~s~~~~~A~~~~ip~~~~g~ 386 (417)
T cd01966 324 AEIVAAVATTDSP------A-LEKL-PAEEVVVGDLEDLE----DLAAE-----ADLLVTNSHGRQAAERLGIPLLRAGF 386 (417)
T ss_pred CEEEEEEECCCCH------H-HHhC-cccceEeCCHHHHH----Hhccc-----CCEEEEcchhHHHHHhcCCCEEEecC
Confidence 9987555532211 1 2223 23444444444444 22221 334444444555566677664322
Q ss_pred --------c--CCCChHHHHHHHHHHHH
Q 022128 280 --------P--THPGLEGWVDSILEALR 297 (302)
Q Consensus 280 --------~--~~~~~~~ll~~i~~~~~ 297 (302)
. .-...++.+..+.+..+
T Consensus 387 Pi~dr~~~~~~~~~Gy~G~~~l~~~i~n 414 (417)
T cd01966 387 PIFDRLGAAHKCTIGYRGTRDLLFEIAN 414 (417)
T ss_pred CcccccccccccccchHHHHHHHHHHHH
Confidence 1 11334566666665544
No 259
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=53.16 E-value=2.2e+02 Score=27.40 Aligned_cols=206 Identities=18% Similarity=0.141 Sum_probs=102.8
Q ss_pred CeEEEeC--CCCChHHHHHHHHhCCCcEEE-eceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC
Q 022128 51 PKVVVTR--ERGKNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (302)
Q Consensus 51 ~~IlitR--~~~~~~~l~~~L~~~G~~v~~-~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~ 127 (302)
++|.+.- +..+..++...|++.|+++.. +| ....++ +.+.++...-+..++..-. ..+.|++.|.+
T Consensus 160 ~~vniiG~~~~~d~~ei~~lL~~~Gl~~~~~l~------~~~~~e----l~~~~~A~~~i~~~~~~~~-~a~~Le~~GvP 228 (416)
T cd01980 160 PSLALLGEMFPADPVAIGSVLERMGLAAVPVVP------TREWRE----LYAAGDAAAVAALHPFYTA-TIRELEEAGRP 228 (416)
T ss_pred CeEEEEccCCCCCHHHHHHHHHHcCCceeeEeC------CCCHHH----HhhcccCcEEEEeChhHHH-HHHHHHHcCCc
Confidence 4555543 223446899999999999975 33 222332 3356777777788887664 46677665443
Q ss_pred CceEEEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHH-HHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCe
Q 022128 128 NVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKI-LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (302)
Q Consensus 128 ~~~i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~-L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~ 203 (302)
-+...=+|- .|.+.+++...- -|.++.-. +... -+. +...+..+..-++|+.+......--.+...|.+.|.+
T Consensus 229 ~~~~~piG~~~td~~l~~la~~--~g~~~~~~-e~~~~~e~~~~~~~ld~~~~l~gkv~v~g~~~~~~~la~~L~elGme 305 (416)
T cd01980 229 IVSGAPVGADGTAAWLEAVGEA--LGLDMDQV-RKVANEEKAAAKGAIRAFSPIKGRVLVSGYEGNELLVARLLIESGAE 305 (416)
T ss_pred eecCCCcCchHHHHHHHHHHHH--hCcCchhH-HHHHHHHHHHHHHHHhhHHhhCceEEEECCCchhHHHHHHHHHcCCE
Confidence 221123443 455555544210 04332100 1111 111 1122222211124666666666667799999999999
Q ss_pred eEEEee-eeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 204 VVRLNT-YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 204 v~~~~v-Y~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
|..+.+ |........ ....+......+.. ...+. ...+.+.+. +..++.-+..-...++++|+..+.
T Consensus 306 vv~~~t~~~~~~~~~~---~~~~l~~~~~~v~~-~~~~~-~~~~~~~~~---~pDl~Ig~s~~~~~a~~~giP~~r 373 (416)
T cd01980 306 VPYVSTSIPKTSLSAP---DYEWLSALGVEVRY-RKSLE-DDIAAVEEY---RPDLAIGTTPLVQYAKEKGIPALY 373 (416)
T ss_pred EEEEecCCCChhhhHH---HHHHHHhcCCcccc-CCCHH-HHHHHHhhc---CCCEEEeCChhhHHHHHhCCCEEE
Confidence 877666 332221111 11112112222222 23333 233333321 233554455556678888888644
No 260
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=53.08 E-value=79 Score=28.56 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-C--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEECh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP-D--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~ 136 (302)
.-+.+.|+++|..+.. +...... + .+.+...++.-..+|+|+.++-..+...++++.+.++ +++.++..+.
T Consensus 199 ~Gf~~al~~~g~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~ 275 (328)
T PRK11303 199 QGFRQALKDDPREVHY---LYANSFEREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGD 275 (328)
T ss_pred HHHHHHHHHcCCCceE---EEeCCCChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 4466778888875421 1111011 0 1234455533345788888887666667777777764 3666666654
No 261
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=52.97 E-value=1.1e+02 Score=24.07 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCEEEEECcHHHH------HHHHHhhhcccCCCceEEEECHHHHHHHHHcCC----CeEEecCCCChHHHHHHHHHHHH
Q 022128 228 SIPVVAVASPSAVR------SSWVNLISDTEQWSNSVACIGETTASAAKRLGL----KNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 228 ~~d~ivftS~s~v~------~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~----~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
.+|++++.+..... ..+.+++++.......+++|+..+. .|.+.|+ .-++..+.++. ...+.+.+.++
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~-~La~aGll~~~~gv~~~~~~~~-~~~~~~~~~~~ 139 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSD-LLEAAGIPLEDPGVVTADDVKD-VFTDRFIDALA 139 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHH-HHHHcCCCCCCCcEEEecCcch-HHHHHHHHHHH
Confidence 57888888764321 0233444332222445555554443 3444566 23455543333 24555555555
Q ss_pred ccC
Q 022128 298 EHG 300 (302)
Q Consensus 298 ~~~ 300 (302)
+|+
T Consensus 140 ~~r 142 (142)
T cd03132 140 LHR 142 (142)
T ss_pred hcC
Confidence 553
No 262
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.82 E-value=73 Score=29.30 Aligned_cols=132 Identities=10% Similarity=0.011 Sum_probs=68.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|.|++--|---..-...+.+.-.+..-+=.+.+.-...|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~---~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 130 (294)
T PRK14187 54 QRKAEMLGLRSETILLPSTI---SESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRL 130 (294)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHH
Confidence 44567779887765442221 2234444443 44568899998873211111111111001111111222211111
Q ss_pred HHHhhccCCCCc-eeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEee
Q 022128 143 EEVIQSSKCSLD-VAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 143 ~~~~~~~~~G~~-~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
- . |-. ..+.| -|+.+.++.|..+. ..|++++++ |+.....-|...|.++|+.|+.+.-
T Consensus 131 ~-~------g~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs 192 (294)
T PRK14187 131 F-T------GQKKNCLIP--CTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHS 192 (294)
T ss_pred h-C------CCCCCCccC--cCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCC
Confidence 1 1 221 22444 36777777666543 268888777 7777778899999999999875554
No 263
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=52.52 E-value=2.2e+02 Score=27.40 Aligned_cols=206 Identities=16% Similarity=0.116 Sum_probs=102.3
Q ss_pred CCeEEEeC--CCCChHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC
Q 022128 50 NPKVVVTR--ERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT 126 (302)
Q Consensus 50 g~~IlitR--~~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~ 126 (302)
.++|.+.- +..+..++...|++.|+++. .+|- .+..++. .......++..++.+-. ..+.+++.+.
T Consensus 166 ~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~------~~~~d~~----~~~~~~~~~~~~~~~~~-~A~~L~~~Gi 234 (427)
T PRK02842 166 HPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPA------RRFTELP----AIGPGTVVALAQPFLSD-TARALRERGA 234 (427)
T ss_pred CCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCC------ccHHHHh----hcCcCcEEEEeCHHHHH-HHHHHHHcCC
Confidence 34454433 33345789999999999986 4442 1222222 33344455667776553 5666655554
Q ss_pred CCceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCc--cHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHh-
Q 022128 127 PNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN- 199 (302)
Q Consensus 127 ~~~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~--~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~- 199 (302)
+-+.. +-+| ..|.+.|++.... -|.+....-... --..+.+.+.... ..|+|+.+..+..-.-.+...|.+
T Consensus 235 P~~~~~~P~G~~~T~~~L~~la~~--~g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee 312 (427)
T PRK02842 235 KVLTAPFPLGPEGTRAWLEAAAAA--FGIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE 312 (427)
T ss_pred ccccCCCCcChHHHHHHHHHHHHH--hCcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh
Confidence 33222 2255 3566666655210 043321000000 0112223333321 268899887655445568889988
Q ss_pred CCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022128 200 RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
.|+++..+.+-. ......+..++.+. .++.+...+.- . .+.+.+.+. +..++.=|...+-.+.+.|+..
T Consensus 313 lGm~~v~v~t~~--~~~~~~~~~~~~l~-~~~~v~~~~D~-~-~l~~~i~~~---~pDllig~~~~~~pl~r~GfP~ 381 (427)
T PRK02842 313 CGMELVEVGTPY--LNRRFLAAELALLP-DGVRIVEGQDV-E-RQLDRIRAL---RPDLVVCGLGLANPLEAEGITT 381 (427)
T ss_pred CCCEEEEeCCCC--CCHHHHHHHHHhcc-CCCEEEECCCH-H-HHHHHHHHc---CCCEEEccCccCCchhhcCCce
Confidence 999985544311 11111122233332 25455554432 2 233444432 2234444556666788889874
No 264
>PRK07825 short chain dehydrogenase; Provisional
Probab=52.21 E-value=1.6e+02 Score=25.73 Aligned_cols=71 Identities=15% Similarity=-0.002 Sum_probs=42.8
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--fTS~~av~~f~~~l~~ 123 (302)
.+.|++||||-..+. ...+++.|.+.|++++..- . +.+.+.+....+....++. ++++.+++.+++.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~----r---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGD----L---DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA 74 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEE----C---CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH
Confidence 356889999986543 5668888889999865421 1 2223332222222233332 4788888888887765
Q ss_pred c
Q 022128 124 A 124 (302)
Q Consensus 124 ~ 124 (302)
.
T Consensus 75 ~ 75 (273)
T PRK07825 75 D 75 (273)
T ss_pred H
Confidence 3
No 265
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.15 E-value=80 Score=27.43 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHhC-CCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEECh
Q 022128 63 GKLIKALAKH-RIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGA 136 (302)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~~----~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~-~~~i~aVG~ 136 (302)
.-+.+.++++ |..+... ... ..+ .+.+...+..-..+|+|++.|-..+..+.+.+.+.+.. ++.+++.+.
T Consensus 143 ~gf~~a~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~ 218 (273)
T cd06310 143 EGFLEGLKEYPGIEIVAT--QYS--DSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDA 218 (273)
T ss_pred HHHHHHHHhCCCcEEEec--ccC--CcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 3455678777 7665431 111 111 12333444333458999999888777788888888774 666776665
Q ss_pred hh
Q 022128 137 GT 138 (302)
Q Consensus 137 ~T 138 (302)
..
T Consensus 219 ~~ 220 (273)
T cd06310 219 SP 220 (273)
T ss_pred Ch
Confidence 53
No 266
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=52.05 E-value=38 Score=32.35 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=48.7
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT 109 (302)
.-..|.+||+.....-..++.+.++.+|+++..+-.=--++ .+.+++++.|+.-++++.|.+|
T Consensus 76 l~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~-v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 76 LVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEA-VDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred ccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCC-CCHHHHHHHHhcCCCccEEEEE
Confidence 34468899999998889999999999999998664432222 2567888888666788888886
No 267
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=52.00 E-value=87 Score=26.71 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=44.7
Q ss_pred CeEEEeC-CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH---H----HHHHHH
Q 022128 51 PKVVVTR-ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS---V----FLEAWK 122 (302)
Q Consensus 51 ~~IlitR-~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~---~----f~~~l~ 122 (302)
|+|+|.- .......+.+.|+++|+++..++ +.. .+.+||.||++.+.... . +.+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~--------~~~-------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~ 65 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITS--------DPE-------EILDADGIVLPGVGAFGAAMENLSPLRDVIL 65 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEC--------CHH-------HHccCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4566554 44456789999999999877663 111 23579999998732111 1 111122
Q ss_pred HcCCCCceEEEEChhhHHHHHH
Q 022128 123 EAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+.--.+.++++|.-+- +.|-+
T Consensus 66 ~~~~~~~PilgIC~G~-q~l~~ 86 (200)
T PRK13143 66 EAARSGKPFLGICLGM-QLLFE 86 (200)
T ss_pred HHHHcCCCEEEECHHH-HHHhh
Confidence 1111367887776654 44443
No 268
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=51.91 E-value=40 Score=29.14 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC--CchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~--~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
..+.+.|+++|.++.. .+...... ..+.+.+.+..-...|+|+.++......+.+++.+.++ .++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~ 214 (266)
T cd06282 137 AGYRAAMRAAGLAPLP--PVEIPFNTAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred HHHHHHHHHcCCCCCc--cccCCCcHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecch
Confidence 3345677788876432 12111111 11234444433345799999988877778888888875 35666666543
No 269
>PRK09739 hypothetical protein; Provisional
Probab=51.83 E-value=33 Score=29.22 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=38.3
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCC------------------CCcHHHHHHcCCCCEEEEECc-------HHHHHHHH
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVH------------------HVDQTVLKQALSIPVVAVASP-------SAVRSSWV 245 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~------------------~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~ 245 (302)
+.+.+.|++.|.+|+.+.+|+....+ ....+..+.+...|.|+|.+| ..++ .|+
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK-~~i 102 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSFPAMLK-GYI 102 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcchHHHH-HHH
Confidence 45677788889899999888753211 011223344568899999987 5677 777
Q ss_pred Hhh
Q 022128 246 NLI 248 (302)
Q Consensus 246 ~~l 248 (302)
+.+
T Consensus 103 D~v 105 (199)
T PRK09739 103 DRV 105 (199)
T ss_pred HHH
Confidence 765
No 270
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=51.78 E-value=86 Score=27.41 Aligned_cols=80 Identities=20% Similarity=0.149 Sum_probs=49.2
Q ss_pred CeEEEeCCCCC--hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------HH
Q 022128 51 PKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (302)
Q Consensus 51 ~~IlitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av------------~~ 116 (302)
|+|+|.+..+. ..++.+.|++.|+++..++.- +. .+.++|.||+...... ..
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~------~~--------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~ 66 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYE------DG--------SLPDYDGVVLPGGFSYGDYLRAGAIAAASP 66 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecC------CC--------CCCCCCEEEECCCCcccccccccchhcchH
Confidence 46777776543 346889999999998877531 11 1457899999885321 11
Q ss_pred HHHHHHHcCCCCceEEEEChhhHHHHHHH
Q 022128 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
+.+.+.+..-.+.++++|.-+. +.|.+.
T Consensus 67 ~~~~l~~~~~~g~pvlgIC~G~-QlLa~~ 94 (227)
T TIGR01737 67 IMQEVREFAEKGVPVLGICNGF-QILVEA 94 (227)
T ss_pred HHHHHHHHHHcCCEEEEECHHH-HHHHHc
Confidence 2222322222467888888766 566665
No 271
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=51.74 E-value=1.8e+02 Score=26.14 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~ 178 (302)
.+.+.|+-. +........+.+.+. +++++.....+.. ... ..--.+.|. ......+++.+.+.. +.
T Consensus 68 ~~v~~vvg~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~--~~~------~~~f~~~~~~~~~~~~~~~~~~~~~-g~ 135 (343)
T PF13458_consen 68 DGVDAVVGPLSSAQAEAVAPIAEEA---GIPYISPSASSPS--PDS------PNVFRLSPSDSQQAAALAEYLAKKL-GA 135 (343)
T ss_dssp STESEEEESSSHHHHHHHHHHHHHH---T-EEEESSGGGGT--TTH------TTEEESS--HHHHHHHHHHHHHHTT-TT
T ss_pred cCcEEEEecCCcHHHHHHHHHHHhc---CcEEEEeeccCCC--CCC------CcEEEEeccccHHHHHHHHHHHHHc-CC
Confidence 678888775 566666677777664 4566664433321 111 221122232 234556766655432 35
Q ss_pred CEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEE-CcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivft-S~s~v~~~~~~~l~~ 250 (302)
+++.++..+. ....+.+.+++.|.++.....|. +...+....+..+ .++|+|++. .+...- .|++.+.+
T Consensus 136 ~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~-~~~~~~~~ 212 (343)
T PF13458_consen 136 KKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGDPADAA-AFLRQLRQ 212 (343)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEESTHHHHH-HHHHHHHH
T ss_pred cEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEeccchhHH-HHHHHHHh
Confidence 7887775543 24567889999998864444443 2222222233333 578887665 444455 67777765
Q ss_pred c
Q 022128 251 T 251 (302)
Q Consensus 251 ~ 251 (302)
.
T Consensus 213 ~ 213 (343)
T PF13458_consen 213 L 213 (343)
T ss_dssp T
T ss_pred h
Confidence 4
No 272
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.69 E-value=22 Score=25.94 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=27.4
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
-||+.....|++.|++++. ....+.++.++++.
T Consensus 61 ~iG~~~~~~L~~~gI~v~~-~~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 61 GIGEGAFRALKEAGIKVYQ-GAGGDIEEALEAYL 93 (94)
T ss_dssp CSCHHHHHHHHHTTSEEEE-STSSBHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCEEEE-cCCCCHHHHHHHHh
Confidence 4899999999999999754 47778888887764
No 273
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=51.57 E-value=60 Score=27.59 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=30.2
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhhH
Q 022128 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTA 139 (302)
Q Consensus 93 l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~Ta 139 (302)
+.+.+..-.+.|.|+.++-.....+.+.+.+.+. .++.+++.+....
T Consensus 169 ~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~~ 218 (264)
T cd01537 169 AEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTPE 218 (264)
T ss_pred HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCccH
Confidence 3444433345888988886666667777877775 3666776665443
No 274
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=51.31 E-value=1.3e+02 Score=24.37 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=63.4
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCc--HHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCc-eEEEECHH
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSN-SVACIGET 264 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~-~i~~IG~~ 264 (302)
.+.|.+.|++.|++|..+-+|.....+... ..+.+.. ++.|.-++...+.+- ..+...+ ..++ -..|-.+.
T Consensus 14 K~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG-~~iaANK---~~GIrAa~~~d~~ 89 (140)
T PF02502_consen 14 KEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIG-MSIAANK---VPGIRAALCSDPY 89 (140)
T ss_dssp HHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHH-HHHHHHT---STT--EEE-SSHH
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChh-hhhHhhc---CCCEEEEeeCCHH
Confidence 467888999999999999999876333322 1122222 466655555555555 3333222 2244 35578999
Q ss_pred HHHHHHHc-CCCeEEecCCCChHHHHHHHHHHH
Q 022128 265 TASAAKRL-GLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 265 Ta~~l~~~-G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
+|.-.++. +-+++....+...+.++..|.+.+
T Consensus 90 ~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~ 122 (140)
T PF02502_consen 90 SAKMAREHNDANVLCLGARVIGEELAKEIVDAF 122 (140)
T ss_dssp HHHHHHHTT--SEEEEETTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcEEEechhhccHHHHHHHHHHH
Confidence 99999986 455556677778888887777665
No 275
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.17 E-value=97 Score=28.33 Aligned_cols=128 Identities=20% Similarity=0.141 Sum_probs=70.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHH---HHhcCCCccEEEEeChHH--HH--HHHHHHHHc-CCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~---~l~~l~~~d~IifTS~~a--v~--~f~~~l~~~-~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+.. ..+++.+ .++.....|+|++--|-- .+ ..++.+... ..+++.-.-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 128 (282)
T PRK14180 52 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGR 128 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHH
Confidence 345667779887765443322 2233443 444456788999887732 22 122222110 112222222221
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
- . . |-...+.| -|+.+.++.|..+.. .|++++++ ||.....-|...|.++|+.|+.+.-
T Consensus 129 l-----~-~------g~~~~~~P--cTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs 190 (282)
T PRK14180 129 L-----Q-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 190 (282)
T ss_pred H-----h-c------CCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence 1 0 1 31112343 367888777775542 68888877 7777777889999999998866643
No 276
>PRK03094 hypothetical protein; Provisional
Probab=51.14 E-value=26 Score=25.61 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=26.2
Q ss_pred cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 188 ~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
.+-.++.+.|+++|++|..+.-|.. ...+|++++|.
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~-------------~~~~Da~VitG 43 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD-------------AQGCDCCVVTG 43 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc-------------cCCcCEEEEeC
Confidence 4556799999999988866542211 24789999988
No 277
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=51.06 E-value=36 Score=26.41 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCeEEEeCCCCCh------HHHHHHHHhCCCcEEEeceEEeeeCC-CchHHHHHHhcCCCccEEEEeChHHHHHHH
Q 022128 50 NPKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (302)
Q Consensus 50 g~~IlitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~~l~~~d~IifTS~~av~~f~ 118 (302)
=++|+..||.++. +.+.+..+++|...+++|+-.-.+.. +...+.+.++.+.+.=++..-|.+=+..+.
T Consensus 28 fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~Ra~~l~ 103 (110)
T PF04273_consen 28 FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGTRASALW 103 (110)
T ss_dssp --EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSHHHHHHH
T ss_pred CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCChhHHHHH
Confidence 3578889987432 34667889999999999988643322 234566666666555455555555444443
No 278
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=51.05 E-value=1.4e+02 Score=24.88 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=51.2
Q ss_pred EEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcCCCCc
Q 022128 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNV 129 (302)
Q Consensus 54 litR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~~~~~~~ 129 (302)
++.+.......+.+.|++.|+++..+|.-+.. +.+ ..+.++|.||++ |+.....+.. +.+.-..++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-----~~~----~~~~~~dgvil~gG~~~~~~~~~~~~-i~~~~~~~~ 72 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEIT-----LEE----LELLNPDAIVISPGPGHPEDAGISLE-IIRALAGKV 72 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCCC-----HHH----HhhcCCCEEEECCCCCCcccchhHHH-HHHHHhcCC
Confidence 44466667888999999999999988773321 111 134679998875 4332221111 212112468
Q ss_pred eEEEEChhhHHHHHHHhhccCCCCcee
Q 022128 130 RIGVVGAGTASIFEEVIQSSKCSLDVA 156 (302)
Q Consensus 130 ~i~aVG~~Ta~~l~~~~~~~~~G~~~~ 156 (302)
+++.|.-+- +.|-..+ |-++.
T Consensus 73 PvlGIC~G~-Qlla~~~-----Gg~v~ 93 (184)
T cd01743 73 PILGVCLGH-QAIAEAF-----GGKVV 93 (184)
T ss_pred CEEEECHhH-HHHHHHh-----CCEEE
Confidence 888887776 4444443 66553
No 279
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=50.94 E-value=1.2e+02 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=17.0
Q ss_pred HHHHHHHcCCCeE----EecCCCChHHHHHHHHHHHH
Q 022128 265 TASAAKRLGLKNV----YYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 265 Ta~~l~~~G~~~~----~v~~~~~~~~ll~~i~~~~~ 297 (302)
..+.|+++|++.+ .+...|+.+++- .++++.+
T Consensus 102 ~~~~l~~~g~~~v~~~~~~~~~p~~~~~~-~~~~~~~ 137 (140)
T TIGR01753 102 WEERLKEAGATIIAEGLKVDGDPEEEDLD-KCREFAK 137 (140)
T ss_pred HHHHHHHCCCEEecCCeeeecCCCHHHHH-HHHHHHH
Confidence 4555666787642 334556655443 4555543
No 280
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.45 E-value=86 Score=28.88 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=68.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+.. ..+++.+.+. ...+.|+|++--|-- .+ ..++.+.. ...+++.-+-.|
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g- 128 (296)
T PRK14188 53 KGKQTKEAGMASFEHKLPADT---SQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAG- 128 (296)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHH-
Confidence 344567779887654432221 2234444444 445688999987732 21 11221111 011222222222
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeC-CCcchhhHHHHHHhCCCeeEEE
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~ 207 (302)
.+- . |- ..+.| -|+.+.++.|..+. ..|++++++. +..-..-+...|.+.|+.|+.+
T Consensus 129 ----~l~-~------~~-~~~~P--cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 129 ----RLA-T------GE-TALVP--CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred ----HHh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 111 1 32 22443 45777777776543 2789999986 7777778899999999887544
No 281
>PRK09271 flavodoxin; Provisional
Probab=50.44 E-value=79 Score=25.86 Aligned_cols=68 Identities=9% Similarity=0.047 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHcCCCCceEEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--------av~~f~~~l~~~~~~~~~i~aV 134 (302)
+.+++.|+..|+++.. +.+... +.. .....+.++|.|+|-|+. .+..|++.+......+.+++++
T Consensus 19 ~~ia~~l~~~g~~v~~---~~~~~~-~~~---~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 19 REIEERCEEAGHEVDW---VETDVQ-TLA---EYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred HHHHHHHHhCCCeeEE---Eecccc-ccc---ccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 4455666777876642 222110 111 111144678999998852 4677877776533345566666
Q ss_pred Chh
Q 022128 135 GAG 137 (302)
Q Consensus 135 G~~ 137 (302)
|-.
T Consensus 92 gsg 94 (160)
T PRK09271 92 GTG 94 (160)
T ss_pred ecC
Confidence 653
No 282
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=50.23 E-value=20 Score=28.40 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=34.5
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeChHHH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG 114 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IifTS~~av 114 (302)
..-+.+.|++.|+++....++. .|.+.+.+.+.++ ..+|.||.|...++
T Consensus 20 ~~~l~~~l~~~G~~~~~~~~v~----Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 20 GPALAELLTELGIEVTRYVIVP----DDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred HHHHHHHHHHCCCeEEEEEEeC----CCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 4568889999999988765542 4556666666443 56898888877664
No 283
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=50.15 E-value=1.5e+02 Score=28.40 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHHHhcccCCC--CCCEEEEeCCC------cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEE
Q 022128 164 GKILASELPKNGK--KKCTVLYPASA------KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (302)
Q Consensus 164 ~e~L~~~L~~~~~--~~~~vL~~rg~------~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivft 235 (302)
...+++...+|.. ..++|+++... .-...+.+.|.+.|..|..+.+-.. +.+++.+.+...+++++-
T Consensus 230 ~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-----~~~eI~~~i~~a~~~vvG 304 (388)
T COG0426 230 PKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-----DPSEIVEEILDAKGLVVG 304 (388)
T ss_pred HHHHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-----CHHHHHHHHhhcceEEEe
Confidence 4455555544432 22356665442 2346788999999988866555433 445566666788999999
Q ss_pred CcH-------HHHHHHHHhhhcccCCCceEEEEC---------HHHHHHHHHcCCCe----EEecCCCChHHHHHHHHHH
Q 022128 236 SPS-------AVRSSWVNLISDTEQWSNSVACIG---------ETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 236 S~s-------~v~~~~~~~l~~~~~~~~~i~~IG---------~~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~ 295 (302)
||. .+. .++..+......+..+.+.| +...+.++++|++. +.+--.|+.+.+ +.+.++
T Consensus 305 sPT~~~~~~p~i~-~~l~~v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~~i~vk~~P~~~~l-~~c~e~ 382 (388)
T COG0426 305 SPTINGGAHPPIQ-TALGYVLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFDGIEVKFRPTEEDL-KKCEEA 382 (388)
T ss_pred cCcccCCCCchHH-HHHHHHHhccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEeccceEEEecCCHHHH-HHHHHH
Confidence 996 355 45544443322334455544 67888899999873 233345666543 344433
No 284
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=50.08 E-value=2.6e+02 Score=27.49 Aligned_cols=94 Identities=12% Similarity=0.222 Sum_probs=51.5
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHH-------HHHHHHHhhhcccCCCceEEEEC-
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-------VRSSWVNLISDTEQWSNSVACIG- 262 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~-------v~~~~~~~l~~~~~~~~~i~~IG- 262 (302)
+.+.+.|++.|..| ++.+|+.. .....++...+.+.|+|+|-||.- +. .|++.+......+.++.++|
T Consensus 270 ~~ia~gl~~~g~gv-~v~~~~v~--~~~~~~i~~~~~~ad~vilGspT~~~~~~p~~~-~fl~~l~~~~l~gK~~~vFGS 345 (479)
T PRK05452 270 DAIAQGIAEVDPRV-AVKIFNVA--RSDKNEILTNVFRSKGVLVGSSTMNNVMMPKIA-GLLEEITGLRFRNKRASAFGS 345 (479)
T ss_pred HHHHHHHHhhCCCc-eEEEEECC--CCCHHHHHhHHhhCCEEEEECCccCCcchHHHH-HHHHHhhccCcCCCEEEEEEC
Confidence 45666777654322 33455543 222333444445789999999762 44 45555544333345555554
Q ss_pred --------HHHHHHHHHcCCCe---EEecCCCChHHH
Q 022128 263 --------ETTASAAKRLGLKN---VYYPTHPGLEGW 288 (302)
Q Consensus 263 --------~~Ta~~l~~~G~~~---~~v~~~~~~~~l 288 (302)
+...+.++..|++. +.+-..|+.+++
T Consensus 346 ygw~g~a~~~~~~~l~~~g~~~~~~l~~~~~P~ee~~ 382 (479)
T PRK05452 346 HGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDAL 382 (479)
T ss_pred CCcCcHHHHHHHHHHHHCCCEEeccEEEEecCCHHHH
Confidence 34555677788874 334455666543
No 285
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=49.87 E-value=78 Score=28.53 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=18.3
Q ss_pred HHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 166 ~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
.|+++|.+ .|..+.+++-.... .+.+.+++.|+.|..+
T Consensus 22 ~LA~~l~~---~g~~v~f~~~~~~~-~~~~~i~~~g~~v~~~ 59 (279)
T TIGR03590 22 TLARALHA---QGAEVAFACKPLPG-DLIDLLLSAGFPVYEL 59 (279)
T ss_pred HHHHHHHH---CCCEEEEEeCCCCH-HHHHHHHHcCCeEEEe
Confidence 34444432 23455555444322 3445666666655443
No 286
>PLN03139 formate dehydrogenase; Provisional
Probab=49.79 E-value=2.4e+02 Score=26.98 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=81.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--HHHHHHHHHHHcCCCCceEE-EEChhh
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIG-VVGAGT 138 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~-aVG~~T 138 (302)
.-.+.+.|++.|++++..+-. .. +.+++.+ .+.++|.+|.+... -+. -+.+.+ .+++|++ ..|.++
T Consensus 64 ~~~~~~~l~~~g~~~v~~~~~---~~-~~~~~~~---~l~dadili~~~~~~~~~~--~e~l~~--ap~LK~I~~~g~G~ 132 (386)
T PLN03139 64 ALGIRDWLESQGHQYIVTDDK---EG-PDCELEK---HIPDLHVLITTPFHPAYVT--AERIKK--AKNLELLLTAGIGS 132 (386)
T ss_pred CccHHHHHHhcCCeEEEeCCC---CC-CHHHHHH---HhCCCeEEEEcCccCCCCC--HHHHhh--CCCccEEEECCccc
Confidence 345778888999888776411 11 2233433 45678876643211 111 111222 2455544 333333
Q ss_pred H----HHHHHHhhccCCCCceeccCCCccHHHHHHh--------cc------------cC----------CCCCCEEEEe
Q 022128 139 A----SIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LP------------KN----------GKKKCTVLYP 184 (302)
Q Consensus 139 a----~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------L~------------~~----------~~~~~~vL~~ 184 (302)
- +++.+. |+.+.-+|. .+++.+++. +. .| ...|++|.++
T Consensus 133 D~iDl~aa~~~------gI~V~n~~g-~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIV 205 (386)
T PLN03139 133 DHIDLPAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTV 205 (386)
T ss_pred cccCHHHHHHC------CeEEEECCC-cCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEE
Confidence 2 445555 887766543 233322221 00 01 1257788888
Q ss_pred CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC---------cHHHHHHcCCCCEEEEECcHHHH
Q 022128 185 ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 185 rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~---------~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
.-..-...+.+.|+..|.+|. +|.+...+.. ...+-+.+...|+|++.-|.+-+
T Consensus 206 G~G~IG~~vA~~L~afG~~V~---~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~ 268 (386)
T PLN03139 206 GAGRIGRLLLQRLKPFNCNLL---YHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEK 268 (386)
T ss_pred eecHHHHHHHHHHHHCCCEEE---EECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHH
Confidence 655555678899999998764 4554321110 00112223578999888885443
No 287
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=49.77 E-value=1.1e+02 Score=26.97 Aligned_cols=75 Identities=12% Similarity=0.032 Sum_probs=46.6
Q ss_pred ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH------------HH-HHHHHHHcCCC
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV-FLEAWKEAGTP 127 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av------------~~-f~~~l~~~~~~ 127 (302)
-..++...|++.|+++..++.-+.. .. . ..+.+||.||+...... +. +.+.+++..-.
T Consensus 11 ~~~~~~~al~~aG~~v~~v~~~~~~--~~------~-~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~ 81 (238)
T cd01740 11 CDRDMAYAFELAGFEAEDVWHNDLL--AG------R-KDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAER 81 (238)
T ss_pred CHHHHHHHHHHcCCCEEEEeccCCc--cc------c-CCHhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhC
Confidence 3456889999999999987764421 11 0 13467899999876321 10 22333332224
Q ss_pred CceEEEEChhhHHHHHHH
Q 022128 128 NVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 128 ~~~i~aVG~~Ta~~l~~~ 145 (302)
+.++++|..+. +.|.+.
T Consensus 82 g~pvlGIC~G~-QlL~~~ 98 (238)
T cd01740 82 GGLVLGICNGF-QILVEL 98 (238)
T ss_pred CCeEEEECcHH-HHHHHc
Confidence 78898888655 777776
No 288
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=49.63 E-value=70 Score=27.93 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~-~~~i~aVG~~ 137 (302)
.-+.+.++++|..+... . ....+. +.+.+.++.-.++|+|+..+-.....+.+++.+.++. ++.++..+..
T Consensus 140 ~gf~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 215 (271)
T cd06314 140 QGIKDAIKDSKIEIVDT--R--GDEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDED 215 (271)
T ss_pred HHHHHHHhcCCcEEEEE--e--cCccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCC
Confidence 33566777777765431 1 111111 2344555433457888776655555567777777763 5667777665
Q ss_pred h
Q 022128 138 T 138 (302)
Q Consensus 138 T 138 (302)
.
T Consensus 216 ~ 216 (271)
T cd06314 216 P 216 (271)
T ss_pred H
Confidence 4
No 289
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=49.60 E-value=3.1e+02 Score=28.15 Aligned_cols=210 Identities=17% Similarity=0.160 Sum_probs=106.1
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~--- 126 (302)
+.+|-+.-+--.+..-.+.|++.|+.++.- .+ .+.+-+.|||.+=-.-....+.+.+.++
T Consensus 30 ~~~i~~lg~ivHN~~vv~~l~~~Gv~~v~~----------~~-------~~~~~~~vii~aHG~~~~~~~~~~~~~~~vi 92 (647)
T PRK00087 30 KGKIYTLGPLIHNNQVVEKLKKKGIKPIED----------ID-------ELNEGDTIIIRSHGVPPEVLEELKDKGLKVI 92 (647)
T ss_pred CCCEEEeCCCcCCHHHHHHHHHCCCEEeCC----------Hh-------hCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE
Confidence 456766667777889999999999988731 11 1222344454443333333344444332
Q ss_pred -------------------CCceEEEEChhhHHHHHHHhhccCCCCc---eeccCCCccHHHHHHhcccCCCCCCEEEEe
Q 022128 127 -------------------PNVRIGVVGAGTASIFEEVIQSSKCSLD---VAFSPSKATGKILASELPKNGKKKCTVLYP 184 (302)
Q Consensus 127 -------------------~~~~i~aVG~~Ta~~l~~~~~~~~~G~~---~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~ 184 (302)
.+-.++.+|..-....+-.+ |.. ..++ .+.+.+ +.|.. .+++.++
T Consensus 93 DaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpEv~g~~-----g~~~~~~~vv---~~~~~~-~~~~~----~~~~~~~ 159 (647)
T PRK00087 93 DATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPEVIGIN-----GWCNNSAIIV---EDGEEA-EKLPF----DKKICVV 159 (647)
T ss_pred ECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeec-----cccCCCEEEE---CCHHHH-hhCCC----CCCEEEE
Confidence 24456666655544443332 211 1111 133443 33331 2456555
Q ss_pred CCCcc----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHH--HHHHcCCCCEEEEE----CcHHHHHHHHHhhhcccCC
Q 022128 185 ASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT--VLKQALSIPVVAVA----SPSAVRSSWVNLISDTEQW 254 (302)
Q Consensus 185 rg~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~--~~~~~~~~d~ivft----S~s~v~~~~~~~l~~~~~~ 254 (302)
.=-.- -..+.+.|+.+. .++.++.+.|......+ +.+.+...|++++- |+++-+ +++......
T Consensus 160 ~QTT~~~~~~~~~~~~l~~~~---~~~~~~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~SsNt~~--L~~i~~~~~-- 232 (647)
T PRK00087 160 SQTTEKQENFEKVLKELKKKG---KEVKVFNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSSNTTK--LYEICKSNC-- 232 (647)
T ss_pred EcCCCcHHHHHHHHHHHHHhC---CCcccCCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCccHHH--HHHHHHHHC--
Confidence 43222 234667777654 44566777766543321 22223678987764 555555 556665431
Q ss_pred CceEEEECHHHHHHHHH---cCCCeE-EecCCCChHHHHHHHHHHHHcc
Q 022128 255 SNSVACIGETTASAAKR---LGLKNV-YYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 255 ~~~i~~IG~~Ta~~l~~---~G~~~~-~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.+.+-|- +++.+.. .|.+.+ +.+...+++.+++.+..++...
T Consensus 233 -~~~~~ie--~~~el~~~~~~~~~~vgitagaStP~~~i~~v~~~l~~~ 278 (647)
T PRK00087 233 -TNTIHIE--NAGELPEEWFKGVKIIGVTAGASTPDWIIEEVIKKMSEL 278 (647)
T ss_pred -CCEEEEC--ChHHCCHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHh
Confidence 1222221 1122211 234444 4566678888888888777654
No 290
>PRK07053 glutamine amidotransferase; Provisional
Probab=49.56 E-value=1.2e+02 Score=26.75 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=35.1
Q ss_pred CCeEEEeCC--CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 022128 50 NPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (302)
Q Consensus 50 g~~IlitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS 110 (302)
+|+|++.+. .+....+.+.|++.|+++..+....-.... .++.+||.||++-
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~---------~~~~~~d~lii~G 55 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLET---------LDALEPDLLVVLG 55 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCC---------CCccCCCEEEECC
Confidence 467888874 345677999999999888766554322101 1345789999876
No 291
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=49.38 E-value=2e+02 Score=26.03 Aligned_cols=124 Identities=8% Similarity=0.056 Sum_probs=57.1
Q ss_pred HHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH---
Q 022128 164 GKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--- 238 (302)
Q Consensus 164 ~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s--- 238 (302)
.+.|++.+..... ++-++++.......+.+.+..++.|..- .+..+-.. ..+++...+...|+++++|..
T Consensus 203 ~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~-~v~~~g~~----~~~~l~~~~~~ad~~v~ps~~~~~ 277 (367)
T cd05844 203 PLLLLEAFARLARRVPEVRLVIIGDGPLLAALEALARALGLGG-RVTFLGAQ----PHAEVRELMRRARIFLQPSVTAPS 277 (367)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCC-eEEECCCC----CHHHHHHHHHhCCEEEECcccCCC
Confidence 3445555543321 2344554443333455655555555321 12222111 112333334678898888742
Q ss_pred ----HHHHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 239 ----AVRSSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 239 ----~v~~~~~~~l~~~~~~~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+.-..+++.+. .++++++-.-. ..+.+.+ |-...+ .+..+.+++.++|.+.+..
T Consensus 278 ~~~E~~~~~~~EA~a----~G~PvI~s~~~~~~e~i~~-~~~g~~-~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 278 GDAEGLPVVLLEAQA----SGVPVVATRHGGIPEAVED-GETGLL-VPEGDVAALAAALGRLLAD 336 (367)
T ss_pred CCccCCchHHHHHHH----cCCCEEEeCCCCchhheec-CCeeEE-ECCCCHHHHHHHHHHHHcC
Confidence 11102333332 24566653221 2233333 222223 3445889999998887653
No 292
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.31 E-value=1.1e+02 Score=27.98 Aligned_cols=126 Identities=15% Similarity=0.090 Sum_probs=68.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--H--HHHHHHHHHcCCCCceEEEEChhh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v--~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. ...+.|+|++--|-- + +.+++.+. +..-+=.+.+.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~----p~KDVDGl~~~n 126 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESI---SEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKID----ANKDIDCLTFIS 126 (278)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccC----cccccCccCHhh
Confidence 35667779887755443221 2234444443 446789999987732 2 11222221 111111111211
Q ss_pred HHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEe
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
...+. . |-. .+.| -|+.+..+.|..+.. .|++++++ |+.....-|...|.++|+.|+.+.
T Consensus 127 ~g~l~-~------g~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~ch 189 (278)
T PRK14172 127 VGKFY-K------GEK-CFLP--CTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICH 189 (278)
T ss_pred HHHHh-C------CCC-CCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 11111 1 322 2444 367787777765532 68888777 777777788999999999886665
No 293
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=49.30 E-value=1.6e+02 Score=27.18 Aligned_cols=44 Identities=11% Similarity=0.179 Sum_probs=26.8
Q ss_pred CceEEEEC--HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 255 SNSVACIG--ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 255 ~~~i~~IG--~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
++++++-. ....+.+ ..|..-..+ +.-+.++++++|.+.+....
T Consensus 281 G~Pvv~s~~~~g~~eiv-~~~~~G~lv-~~~d~~~la~~i~~l~~~~~ 326 (359)
T PRK09922 281 GIPCISSDCMSGPRDII-KPGLNGELY-TPGNIDEFVGKLNKVISGEV 326 (359)
T ss_pred CCCEEEeCCCCChHHHc-cCCCceEEE-CCCCHHHHHHHHHHHHhCcc
Confidence 56666654 2233333 335554444 44599999999999877653
No 294
>PLN02409 serine--glyoxylate aminotransaminase
Probab=49.16 E-value=1e+02 Score=29.29 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=19.1
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+||+.....-...+.+.++..|+++..++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~ 115 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVES 115 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEEC
Confidence 556777776433333344556666777666654
No 295
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=49.00 E-value=55 Score=28.55 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred CCeEEEeCCCC-------ChHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHH
Q 022128 50 NPKVVVTRERG-------KNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (302)
Q Consensus 50 g~~IlitR~~~-------~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l 121 (302)
.++|++..... +..-+.+.++++ |.+.................+.+.|+...++|+|+.++-..+..+.+++
T Consensus 122 ~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al 201 (270)
T cd06308 122 KGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVAQQDGDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAA 201 (270)
T ss_pred CceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEEecCCCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHH
Confidence 45676664321 123345577777 7655432111100000123455556444568999998888888888888
Q ss_pred HHcCC-CCceEEEEChh
Q 022128 122 KEAGT-PNVRIGVVGAG 137 (302)
Q Consensus 122 ~~~~~-~~~~i~aVG~~ 137 (302)
.+.++ .++.+++.+..
T Consensus 202 ~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 202 KRAGREKEIKFIGIDGL 218 (270)
T ss_pred HHcCCCCCcEEEEecCC
Confidence 88877 46777777553
No 296
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=48.67 E-value=91 Score=32.45 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=64.3
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHHH
Q 022128 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~~ 119 (302)
.++|++-.... +..-....|+..|++|+.-..+. +.+++-+.. .-.+.|.|+++|.. .+..+.+
T Consensus 582 rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~-----s~e~~v~aa-~~~~a~ivvlcs~d~~~~e~~~~l~~ 655 (714)
T PRK09426 582 RPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQ-----TPEEAARQA-VENDVHVVGVSSLAAGHKTLVPALIE 655 (714)
T ss_pred CceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCC-----CHHHHHHHH-HHcCCCEEEEeccchhhHHHHHHHHH
Confidence 34566554322 23345668899999995333231 112333333 23578999998866 4556677
Q ss_pred HHHHcCCCCceEEEECh---hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 120 AWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~---~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.+++.+.+++++++=|. ...+.+++. |++..+.+ +-+...+++.+.
T Consensus 656 ~Lk~~G~~~v~vl~GG~~~~~~~~~l~~a------GvD~~i~~-g~d~~~~L~~l~ 704 (714)
T PRK09426 656 ALKKLGREDIMVVVGGVIPPQDYDFLYEA------GVAAIFGP-GTVIADAAIDLL 704 (714)
T ss_pred HHHhcCCCCcEEEEeCCCChhhHHHHHhC------CCCEEECC-CCCHHHHHHHHH
Confidence 77777766677775553 334567777 99875544 445555444443
No 297
>PLN00016 RNA-binding protein; Provisional
Probab=48.67 E-value=2.1e+02 Score=26.74 Aligned_cols=89 Identities=17% Similarity=0.084 Sum_probs=51.0
Q ss_pred cCCCCCCCeEEEe----CCCC-ChHHHHHHHHhCCCcEEEeceE-----------------------EeeeCCCchHHHH
Q 022128 44 ASASNSNPKVVVT----RERG-KNGKLIKALAKHRIDCLELPLI-----------------------QHAQGPDTDRLSS 95 (302)
Q Consensus 44 ~~~~l~g~~Ilit----R~~~-~~~~l~~~L~~~G~~v~~~P~~-----------------------~~~~~~~~~~l~~ 95 (302)
.......++|||| -..+ -...+++.|.+.|++|..+--- ++.. .|...+..
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-~D~~d~~~ 124 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-GDPADVKS 124 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-ecHHHHHh
Confidence 3455667889999 6544 3567888898899988755321 1111 12222333
Q ss_pred HHhcCCCccEEEEeC---hHHHHHHHHHHHHcCCCCceEEEECh
Q 022128 96 VLNADTIFDWIIITS---PEAGSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 96 ~l~~l~~~d~IifTS---~~av~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
.+ ...++|.||-.. ..+++.+++++.+.+.+ +++.++.
T Consensus 125 ~~-~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvk--r~V~~SS 165 (378)
T PLN00016 125 KV-AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLK--QFLFCSS 165 (378)
T ss_pred hh-ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCC--EEEEEcc
Confidence 33 334688887664 23456667766665432 4554443
No 298
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=48.65 E-value=1.6e+02 Score=24.49 Aligned_cols=120 Identities=16% Similarity=0.192 Sum_probs=62.7
Q ss_pred EEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC-CCCCEEEEeCCCcch-hhHHHHHHhC--CCeeEE
Q 022128 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-KKKCTVLYPASAKAS-NEIEEGLSNR--GFEVVR 206 (302)
Q Consensus 131 i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~-~~~~~vL~~rg~~~~-~~L~~~L~~~--G~~v~~ 206 (302)
+++=|.....+++.. |.+ .+...++-+|...+.+.. .++.+|.++.+..+. +.+.+.|++. |.++.
T Consensus 7 ~~~DG~~l~~~~~~~------~~~---~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~- 76 (171)
T cd06533 7 VLPDGIGVVWAARLL------GGP---LPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIV- 76 (171)
T ss_pred EecCcHHHHHHHHHc------CCC---CCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEE-
Confidence 456667776666666 654 234555666666554433 246889888776553 5556677766 43332
Q ss_pred EeeeeeecCCCCc-HHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 207 LNTYTTEPVHHVD-QTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 207 ~~vY~~~~~~~~~-~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
-|..-+..... .++++.+ .++|+|++.=+.=-++.|...+.+. .....++++|-
T Consensus 77 --g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~-l~~~v~~~vG~ 133 (171)
T cd06533 77 --GYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDR-LPVPVAIGVGG 133 (171)
T ss_pred --EecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-CCCCEEEEece
Confidence 22222222111 2233333 4678766654433333455544432 22355777775
No 299
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.26 E-value=1.5e+02 Score=26.03 Aligned_cols=107 Identities=16% Similarity=0.142 Sum_probs=62.5
Q ss_pred HHHHHHhcccCCCCCCEEEEe--CCCcchhhHHHHHHhCCCeeEEEeeeeeecCC----CCcHHH---HHHc--CCCCEE
Q 022128 164 GKILASELPKNGKKKCTVLYP--ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH----HVDQTV---LKQA--LSIPVV 232 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~--rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~----~~~~~~---~~~~--~~~d~i 232 (302)
+..+++.|..... +||.++ --+..++...+.|.++||+|..+.+-.-.-+- .++... .+.. ...|+|
T Consensus 106 s~Avv~aL~al~a--~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~Dai 183 (238)
T COG3473 106 STAVVEALNALGA--QRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAI 183 (238)
T ss_pred hHHHHHHHHhhCc--ceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeE
Confidence 4445566665543 455554 44677788899999999999887765443221 222222 2222 467775
Q ss_pred EEECcHHHHHHHH--HhhhcccCCCceEEEEC-HHHHHHHHHcCCCe
Q 022128 233 AVASPSAVRSSWV--NLISDTEQWSNSVACIG-ETTASAAKRLGLKN 276 (302)
Q Consensus 233 vftS~s~v~~~~~--~~l~~~~~~~~~i~~IG-~~Ta~~l~~~G~~~ 276 (302)
|-|.-.++ .|- +.+++ ..+.+++.-. .++..+|+..|.+-
T Consensus 184 -FiSCTnlR-t~eii~~lE~--~~G~PVvsSN~AT~W~~Lr~~g~~~ 226 (238)
T COG3473 184 -FISCTNLR-TFEIIEKLER--DTGVPVVSSNQATLWMALRLIGLRE 226 (238)
T ss_pred -EEEeeccc-cHHHHHHHHH--HhCCceeeccHHHHHHHHHHcCCcc
Confidence 44566666 552 22222 2356776554 45567788888873
No 300
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=48.22 E-value=81 Score=29.51 Aligned_cols=219 Identities=17% Similarity=0.211 Sum_probs=95.4
Q ss_pred eEEEeCCCCChHHHHHHHH--hCCCcEEEeceE----EeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 52 KVVVTRERGKNGKLIKALA--KHRIDCLELPLI----QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 52 ~IlitR~~~~~~~l~~~L~--~~G~~v~~~P~~----~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
.+++.-.. ..+.++..+. ..++.+.++-.= +.....-.+..+..+ .+...+.|++..... +.+.+.|
T Consensus 69 d~Vlv~GD-~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i---~~la~lhf~~t~~~~---~~L~~~G 141 (346)
T PF02350_consen 69 DAVLVLGD-RNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAI---DKLAHLHFAPTEEAR---ERLLQEG 141 (346)
T ss_dssp SEEEEETT-SHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHH---HHH-SEEEESSHHHH---HHHHHTT
T ss_pred CEEEEEcC-CchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhh---hhhhhhhccCCHHHH---HHHHhcC
Confidence 34444432 4566666554 345555555443 333111123344444 333445555554433 3345567
Q ss_pred CCCceEEEEChhhHHHHHHHhhccCC-----CC---------ceeccCCC-cc----HHHHHHhcccCCC-CCCEEEEeC
Q 022128 126 TPNVRIGVVGAGTASIFEEVIQSSKC-----SL---------DVAFSPSK-AT----GKILASELPKNGK-KKCTVLYPA 185 (302)
Q Consensus 126 ~~~~~i~aVG~~Ta~~l~~~~~~~~~-----G~---------~~~~~p~~-~~----~e~L~~~L~~~~~-~~~~vL~~r 185 (302)
.+..+|+++|.-.-.++......... ++ -+.+.|.. .+ .+.+.+.|..... .+-+++++.
T Consensus 142 ~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~ 221 (346)
T PF02350_consen 142 EPPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPL 221 (346)
T ss_dssp --GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE-
T ss_pred CCCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 77889999999888887554111000 11 01111211 11 1222222222111 245677777
Q ss_pred C--CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEE--
Q 022128 186 S--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI-- 261 (302)
Q Consensus 186 g--~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~I-- 261 (302)
. ..++..+.+.|.+.. .+.+++... ..+.+..+...++|+ |.++++. + +....+++++.|
T Consensus 222 hn~p~~~~~i~~~l~~~~----~v~~~~~l~----~~~~l~ll~~a~~vv-gdSsGI~----e---Ea~~lg~P~v~iR~ 285 (346)
T PF02350_consen 222 HNNPRGSDIIIEKLKKYD----NVRLIEPLG----YEEYLSLLKNADLVV-GDSSGIQ----E---EAPSLGKPVVNIRD 285 (346)
T ss_dssp -S-HHHHHHHHHHHTT-T----TEEEE--------HHHHHHHHHHESEEE-ESSHHHH----H---HGGGGT--EEECSS
T ss_pred cCCchHHHHHHHHhcccC----CEEEECCCC----HHHHHHHHhcceEEE-EcCccHH----H---HHHHhCCeEEEecC
Confidence 7 566666766666541 233333221 122232233445544 4433555 1 111246789999
Q ss_pred -CHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 262 -GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 262 -G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
|++- ..+..|..++ +. .+.+.+.+++.+.+..
T Consensus 286 ~geRq--e~r~~~~nvl-v~--~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 286 SGERQ--EGRERGSNVL-VG--TDPEAIIQAIEKALSD 318 (346)
T ss_dssp S-S-H--HHHHTTSEEE-ET--SSHHHHHHHHHHHHH-
T ss_pred CCCCH--HHHhhcceEE-eC--CCHHHHHHHHHHHHhC
Confidence 8764 4555566654 33 7899999999988854
No 301
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=48.05 E-value=1.9e+02 Score=25.24 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=36.2
Q ss_pred HHHHc--CCCCEEEEECcH-HHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCeEEecCCC
Q 022128 222 VLKQA--LSIPVVAVASPS-AVRSSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 222 ~~~~~--~~~d~ivftS~s-~v~~~~~~~l~~~--~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~ 283 (302)
.++.+ .+.|+++....+ .+. .++-.+... ....+.+-+-.+.-.+.+++.|...++.|+..
T Consensus 58 ~L~~agi~~aD~vva~t~~d~~N-~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~ 123 (225)
T COG0569 58 VLEEAGIDDADAVVAATGNDEVN-SVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKL 123 (225)
T ss_pred HHHhcCCCcCCEEEEeeCCCHHH-HHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHH
Confidence 44443 578887777666 555 444443322 12223344568888888999998776655543
No 302
>PRK08605 D-lactate dehydrogenase; Validated
Probab=47.79 E-value=2e+02 Score=26.67 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCcchhhHHHHH-HhCCCeeEEEeeeeeecCCCC------cHHHHHHcCCCCEEEEECcHHH
Q 022128 177 KKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASPSAV 240 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~~~~vY~~~~~~~~------~~~~~~~~~~~d~ivftS~s~v 240 (302)
.|++|.++....-...+...| +..|.+| ..|+..+.... ...+-+.+...|+|++.-|.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V---~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~ 212 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDV---VAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATK 212 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEE---EEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCc
Confidence 577888887666666788888 5566655 34554322110 0011122357899998876654
No 303
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=47.76 E-value=3e+02 Score=27.46 Aligned_cols=202 Identities=9% Similarity=0.004 Sum_probs=99.4
Q ss_pred CChHHHHHHHHhCCCcEEEeceEE------------eee-CCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-C
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQ------------HAQ-GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-G 125 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~------------~~~-~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~ 125 (302)
++..++.+.|+..|+++..+|=+. +.+ ....+++. +..+...-|..++.......+.+++. +
T Consensus 234 gd~~eikrlL~~~Gi~~~~l~d~s~~~d~p~~g~~~~~~ggttleei~----~a~~A~~~ivl~~~~~~~~a~~l~~~~g 309 (515)
T TIGR01286 234 GNFREIKRILSLMGVGYTLLSDPEEVLDTPADGEFRMYAGGTTLEEMK----DAPNAEATVLLQPYTLRKTKEYIEKTWK 309 (515)
T ss_pred hhHHHHHHHHHHcCCCeEEccCccccccCCCCCCccccCCCCCHHHHH----HhhhCcEEEEEchhhhHHHHHHHHHHhC
Confidence 456899999999999999877321 111 12223333 34455555556665444445555442 2
Q ss_pred CCCceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCccH--HHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHh
Q 022128 126 TPNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (302)
Q Consensus 126 ~~~~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~--e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~ 199 (302)
.+-..+ +=+| ..|.+.|++..+.- |.. +|..... ..+.+.|.+.. ..|+|+.+.....-.--+...|.+
T Consensus 310 ~p~~~~~~PiGi~~Td~fL~~la~~~--g~~---ip~~i~~eR~rl~dam~d~~~~l~GKrvaI~gdpd~~~~l~~fL~E 384 (515)
T TIGR01286 310 QETPKLNIPLGVKGTDEFLMKVSEIS--GQP---IPAELTKERGRLVDAMTDSHAWLHGKRFAIYGDPDFVMGLVRFVLE 384 (515)
T ss_pred CCcccCCCCccHHHHHHHHHHHHHHH--CCC---CCHHHHHHHHHHHHHHHHHHHHhcCceEEEECCHHHHHHHHHHHHH
Confidence 221010 1244 45666666552100 432 1322111 12444544321 267899887766556677888999
Q ss_pred CCCeeEEEeeeeeecCCCCcHHHHHHcC----CCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCC
Q 022128 200 RGFEVVRLNTYTTEPVHHVDQTVLKQAL----SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 275 (302)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~~~----~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~ 275 (302)
.|.++..+.+- + ......+++...+. ..+..++.... .. .+.+.+.+. +..++.-+......+++.|+.
T Consensus 385 lGmepv~v~~~-~-~~~~~~~~l~~ll~~~~~~~~~~v~~~~D-l~-~l~~~l~~~---~~DlliG~s~~k~~a~~~giP 457 (515)
T TIGR01286 385 LGCEPVHILCT-N-GTKRWKAEMKALLAASPYGQNATVWIGKD-LW-HLRSLVFTE---PVDFLIGNSYGKYIQRDTLVP 457 (515)
T ss_pred CCCEEEEEEeC-C-CCHHHHHHHHHHHhcCCCCCccEEEeCCC-HH-HHHHHHhhc---CCCEEEECchHHHHHHHcCCC
Confidence 99987444432 1 11111122222221 23444444332 22 233444332 234444444555666778876
Q ss_pred eE
Q 022128 276 NV 277 (302)
Q Consensus 276 ~~ 277 (302)
-+
T Consensus 458 li 459 (515)
T TIGR01286 458 LI 459 (515)
T ss_pred EE
Confidence 53
No 304
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=47.58 E-value=96 Score=26.54 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCeEEEeCCC-----CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022128 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 49 ~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~ 123 (302)
.+.+|++.... ...+.+.+.+++.|+++..++.++. .+...+.+ .+...|.|+|+-.+.... .+.|++
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~---~l~~ad~I~~~GG~~~~~-~~~l~~ 100 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT---ANDPDVVA---RLLEADGIFVGGGNQLRL-LSVLRE 100 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC---CCCHHHHH---HHhhCCEEEEcCCcHHHH-HHHHHh
Confidence 45666655432 3456788899999999999987765 22233333 457899999999998764 455554
No 305
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=47.53 E-value=1.5e+02 Score=26.04 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=44.2
Q ss_pred CCCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCCC----CcHH---HHHHcCCCCEEEEECc----
Q 022128 177 KKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----VDQT---VLKQALSIPVVAVASP---- 237 (302)
Q Consensus 177 ~~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~~~~---~~~~~~~~d~ivftS~---- 237 (302)
.--+|+++.|... -+.+.+.+.+.|++++.+.+ ...|... ..+. +.+.....|+++|.||
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl-~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~ 103 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDP-PGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHG 103 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCc-ccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcccc
Confidence 3457888888542 23556667767888876652 2222211 1111 2222357899999998
Q ss_pred ---HHHHHHHHHhhhcc
Q 022128 238 ---SAVRSSWVNLISDT 251 (302)
Q Consensus 238 ---s~v~~~~~~~l~~~ 251 (302)
.+++ ++++++...
T Consensus 104 sipg~LK-NaiDwls~~ 119 (219)
T TIGR02690 104 AITGSQK-DQIDWIPLS 119 (219)
T ss_pred CcCHHHH-HHHHhcccC
Confidence 5778 888888653
No 306
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=47.51 E-value=41 Score=32.14 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=43.1
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEe--eeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|..|+++.|.- ..+...++-.|++++.+|+..- .-..|.+.+++.+.. +..+|++.|||
T Consensus 112 pGDeVlip~P~Y--~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~--ktk~i~ln~P~ 173 (393)
T COG0436 112 PGDEVLIPDPGY--PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP--KTKAIILNSPN 173 (393)
T ss_pred CCCEEEEeCCCC--cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc--cceEEEEeCCC
Confidence 366799998864 4467777788999999998532 222356677777633 67899998876
No 307
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.48 E-value=1.6e+02 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=32.7
Q ss_pred HHHHHhcCC-CccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhhH
Q 022128 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTA 139 (302)
Q Consensus 93 l~~~l~~l~-~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~Ta 139 (302)
+.+.++.-. ..|+|+.++-.......+++.+.++ +++.+++.+....
T Consensus 175 ~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~ 225 (273)
T cd06309 175 MEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKD 225 (273)
T ss_pred HHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHH
Confidence 444553333 6889988888887778888888775 3677888876653
No 308
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=47.33 E-value=2.5e+02 Score=26.37 Aligned_cols=84 Identities=14% Similarity=0.168 Sum_probs=45.9
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcC--C-CCEEEEE
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--S-IPVVAVA 235 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~--~-~d~ivft 235 (302)
+..++..+..+.. +++.++..+.. .+.+.+.|++.|+.|....-|... ..+....+..+. + .++|++.
T Consensus 120 ~~~~~~~~~~~~w--~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 120 SRVLFTVLRYFRW--AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPD--EKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred HHHHHHHHHHCCC--eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCC--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 4456554433332 56666643332 577889999999887654444321 112223344442 3 5777765
Q ss_pred Cc------HHHHHHHHHhhhccc
Q 022128 236 SP------SAVRSSWVNLISDTE 252 (302)
Q Consensus 236 S~------s~v~~~~~~~l~~~~ 252 (302)
.. ..+. .++..+.+..
T Consensus 196 ~~~~~~~~~~~~-~i~~qa~~~G 217 (382)
T cd06371 196 MHSVLIGGEEQR-LLLETALEMG 217 (382)
T ss_pred eeccccCcHHHH-HHHHHHHHcC
Confidence 43 4556 6777666643
No 309
>PRK05569 flavodoxin; Provisional
Probab=47.30 E-value=1.2e+02 Score=23.79 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=36.2
Q ss_pred cCCCCEEEEECcH---------HHHHHHHHhhhcccCCCceEEEEC----------HHHHHHHHHcCCCe---EEecCCC
Q 022128 226 ALSIPVVAVASPS---------AVRSSWVNLISDTEQWSNSVACIG----------ETTASAAKRLGLKN---VYYPTHP 283 (302)
Q Consensus 226 ~~~~d~ivftS~s---------~v~~~~~~~l~~~~~~~~~i~~IG----------~~Ta~~l~~~G~~~---~~v~~~~ 283 (302)
+.+.|.|+|-||. .+. .|++.+......+.+++++| ....+.+++.|++. +.+...|
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~-~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~p 124 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMA-PFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGDLAVNESP 124 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHH-HHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeeeEEEccCC
Confidence 4578999999974 256 66666643222233333321 12345566778864 3334456
Q ss_pred ChHHHHHHHHHH
Q 022128 284 GLEGWVDSILEA 295 (302)
Q Consensus 284 ~~~~ll~~i~~~ 295 (302)
+.+++ +.+.++
T Consensus 125 ~~~~~-~~~~~~ 135 (141)
T PRK05569 125 NKEEL-NSAKEL 135 (141)
T ss_pred CHHHH-HHHHHH
Confidence 65543 444444
No 310
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.23 E-value=1.8e+02 Score=29.13 Aligned_cols=114 Identities=11% Similarity=0.147 Sum_probs=69.4
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE------------eeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~~ 116 (302)
.+|+|.--..-...+++.|+++|.+++.+-.=+ .... .|.+.+++ . .++++|.++.+.++..+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~-a-~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQL-A-HLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHh-c-CccccCEEEEEcCChHHH
Confidence 568888777677889999999998876553211 1111 01111221 1 456899898886664432
Q ss_pred --HHHHHHHcCCCCceEEEEC--hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 117 --FLEAWKEAGTPNVRIGVVG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 117 --f~~~l~~~~~~~~~i~aVG--~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
......+. .++.++++.- +...+.+++. |.+..+.|+...++.+.+.+..
T Consensus 496 ~~iv~~~~~~-~~~~~iiar~~~~~~~~~l~~~------Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 496 GEIVASAREK-RPDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcC
Confidence 33333333 2466776554 3444556676 9988888888778888776653
No 311
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.23 E-value=2e+02 Score=26.54 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=76.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HHH--HHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GSV--FLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~~--f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|-- ++. .++.+.. ...+++.-+-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~ 128 (295)
T PRK14174 52 KAKSCKEIGMNSTVIELPADT---TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGR 128 (295)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHH
Confidence 345667779887765543222 2234444443 446688999887732 221 1111110 0112222221111
Q ss_pred hhHHHHHHHhhccCCCC-ceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHh----CCCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSN----RGFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~-~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~----~G~~v~~~~ 208 (302)
| +. |. +..+.| -|+.+.++.|..+.. .|++++++ ||+....-|...|.+ .|+.|+.+.
T Consensus 129 -----l--~~-----~~~~~~~~P--cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h 194 (295)
T PRK14174 129 -----L--VM-----GHLDKCFVS--CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH 194 (295)
T ss_pred -----H--hc-----CCCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe
Confidence 1 11 22 122444 367777777765542 68898887 666666666777765 688776655
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEECcHH
Q 022128 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
-... ... +.....|+++-.-+..
T Consensus 195 s~t~-----~l~---~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 195 SATK-----DIP---SYTRQADILIAAIGKA 217 (295)
T ss_pred CCch-----hHH---HHHHhCCEEEEecCcc
Confidence 3321 112 2235678777666544
No 312
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=47.22 E-value=85 Score=27.79 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=45.8
Q ss_pred HHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 165 KILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 165 e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
+.....+.++...+++|+++--... -+...+.+++.|++|..+...+ +..+.+...|+|+++-.
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------d~~~~l~~ad~I~v~GG 88 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------DPVAAIENAEAIFVGGG 88 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------hhHHHHhcCCEEEECCc
Confidence 4444444443224577877754432 2347788999999988776542 11233568899999999
Q ss_pred HHHHHHHHHhhh
Q 022128 238 SAVRSSWVNLIS 249 (302)
Q Consensus 238 s~v~~~~~~~l~ 249 (302)
++.. . .+.++
T Consensus 89 nt~~-l-~~~l~ 98 (233)
T PRK05282 89 NTFQ-L-LKQLY 98 (233)
T ss_pred cHHH-H-HHHHH
Confidence 8887 4 34444
No 313
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=47.21 E-value=88 Score=27.10 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=49.9
Q ss_pred CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 227 LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
.++|.|++.++..++ .+.+....... .+...-+.-..+++.++++|++.+..+.+-+.+.|-+...
T Consensus 14 ~g~dgi~v~~~g~~~-~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL~~~ei~~i~~ 80 (233)
T PF01136_consen 14 LGVDGILVSNPGLLE-LLKELGPDLKIIADYSLNVFNSESARFLKELGASRITLSPELSLEEIKEIAE 80 (233)
T ss_pred CCCCEEEEcCHHHHH-HHHHhCCCCcEEEecCccCCCHHHHHHHHHcCCCEEEECccCCHHHHHHHHH
Confidence 489999999999999 77766443211 1233445678999999999999999999998888776443
No 314
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.02 E-value=1.2e+02 Score=27.84 Aligned_cols=125 Identities=16% Similarity=0.145 Sum_probs=69.5
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--H--HHHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v--~~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+.+++.|+++..+-+-+. ...+++.+.+. ...+.|+|++--|-- . +..++.+... ..+++.-+-.|
T Consensus 55 ~k~~~~~Gi~~~~~~l~~~---~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g-- 129 (284)
T PRK14177 55 VKACHKVGMGSEMIRLKEQ---TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFG-- 129 (284)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHH--
Confidence 4566778988765544222 12334444443 446789999987732 1 1122222110 11222222222
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEe
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
.|. . |-. .+.| -|+.+.++.|..+.. .|++++++ |+.....-|...|.++|+.|+.+.
T Consensus 130 ---~l~-~------g~~-~~~P--cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~ch 190 (284)
T PRK14177 130 ---KLS-M------GVE-TYLP--CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCH 190 (284)
T ss_pred ---HHH-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 111 1 322 2444 367777777765532 68888777 777777889999999999887654
No 315
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.00 E-value=1.2e+02 Score=27.69 Aligned_cols=127 Identities=20% Similarity=0.164 Sum_probs=69.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|.|++--|-- .+ ..++.+.. ...+++.-+-.|.
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~- 127 (282)
T PRK14166 52 AKACEECGIKSLVYHLNENT---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGY- 127 (282)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH-
Confidence 34566779887655443221 2234444444 346788999887732 21 12222111 0112222222221
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEee
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
|- . |....+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.-
T Consensus 128 ----l~-~------g~~~~~~P--cTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs 189 (282)
T PRK14166 128 ----LN-L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHI 189 (282)
T ss_pred ----Hh-c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence 10 1 32222444 36778777776553 268888777 7777778889999999999875554
No 316
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=46.99 E-value=55 Score=30.74 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=36.6
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHH----HHHHcCCCCEEEEEC
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVAS 236 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~----~~~~~~~~d~ivftS 236 (302)
.++++|++....-.......|.+.|+. .+.+..+........+ .+.-...+|+|+..|
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcC
Confidence 578999999988888999999999863 2333333322111111 112235889988853
No 317
>PRK00170 azoreductase; Reviewed
Probab=46.98 E-value=27 Score=29.53 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=35.2
Q ss_pred HHHHHHhC--CCeeEEEeeeeeecCCCC------------------------cHHHHHHcCCCCEEEEECc-------HH
Q 022128 193 IEEGLSNR--GFEVVRLNTYTTEPVHHV------------------------DQTVLKQALSIPVVAVASP-------SA 239 (302)
Q Consensus 193 L~~~L~~~--G~~v~~~~vY~~~~~~~~------------------------~~~~~~~~~~~d~ivftS~-------s~ 239 (302)
+.+.|++. |.+|+.+.+|+...+... ..++.+.+...|.|||.|| ..
T Consensus 25 ~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~~~~pa~ 104 (201)
T PRK00170 25 FIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYNFSIPTQ 104 (201)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecccccCCcHH
Confidence 45667776 888888888766432110 0112333467899999998 56
Q ss_pred HHHHHHHhh
Q 022128 240 VRSSWVNLI 248 (302)
Q Consensus 240 v~~~~~~~l 248 (302)
++ .|++.+
T Consensus 105 LK-~~iDrv 112 (201)
T PRK00170 105 LK-AYIDLI 112 (201)
T ss_pred HH-HHHHhh
Confidence 77 787775
No 318
>PRK07206 hypothetical protein; Provisional
Probab=46.94 E-value=2.1e+02 Score=27.12 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=22.4
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+++|++.+......+.+.+++.|+++..+.
T Consensus 3 k~~liv~~~~~~~~~~~a~~~~G~~~v~v~ 32 (416)
T PRK07206 3 KKVVIVDPFSSGKFLAPAFKKRGIEPIAVT 32 (416)
T ss_pred CeEEEEcCCchHHHHHHHHHHcCCeEEEEE
Confidence 578888887777778888888888765443
No 319
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=46.94 E-value=83 Score=24.88 Aligned_cols=75 Identities=20% Similarity=0.172 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~T 138 (302)
..+...++++|.++............+.. .....+++. ..|+|+..+-..+..+...+.+.++ .++.+++.|..-
T Consensus 29 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~~ 107 (160)
T PF13377_consen 29 EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALRELGIRVPQDISVVSFDDSP 107 (160)
T ss_dssp HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSSG
T ss_pred HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCcH
Confidence 44667888999986543333322111111 111223333 6699999999999999999999886 589999998643
No 320
>PRK05568 flavodoxin; Provisional
Probab=46.81 E-value=48 Score=26.20 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=39.6
Q ss_pred EEEeCCCCChHHHHH----HHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHH
Q 022128 53 VVVTRERGKNGKLIK----ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLE 119 (302)
Q Consensus 53 IlitR~~~~~~~l~~----~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---------av~~f~~ 119 (302)
|+..-..+..+.+++ .+++.|.++..+++-+. +.. ++.++|.|+|-||. .+..|++
T Consensus 6 IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~----~~~-------~~~~~d~iilgsp~y~~~~~~~~~~~~f~~ 74 (142)
T PRK05568 6 IIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA----SVD-------DVKGADVVALGSPAMGDEVLEEGEMEPFVE 74 (142)
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC----CHH-------HHHhCCEEEEECCccCcccccchhHHHHHH
Confidence 344444444444444 44556776654433221 111 34679999999984 3556666
Q ss_pred HHHHcCCCCceEEEECh
Q 022128 120 AWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (302)
.+... +++.+++++|.
T Consensus 75 ~~~~~-~~~k~~~~f~t 90 (142)
T PRK05568 75 SISSL-VKGKKLVLFGS 90 (142)
T ss_pred Hhhhh-hCCCEEEEEEc
Confidence 55332 35667777775
No 321
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.72 E-value=97 Score=28.42 Aligned_cols=147 Identities=21% Similarity=0.127 Sum_probs=79.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+. ...+++.+.+. .....|+|+.--|-- ++ ..++.+.. ...+++.-.-.|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l 130 (288)
T PRK14171 54 IKNAHKIGIDTLLVNLSTT---IHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL 130 (288)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhh
Confidence 4456777987765444222 12334444444 346789999988732 21 12222211 11233333322221
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
- . |-...+.| -|+.+..+.|..+.. .|++++++ ||.....-|...|.+.|+.|+.+.-+.
T Consensus 131 -----~-~------g~~~~~~P--cTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--- 193 (288)
T PRK14171 131 -----H-S------GISQGFIP--CTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--- 193 (288)
T ss_pred -----h-c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---
Confidence 1 1 32122444 367777777765532 68888777 777777788999999999887554322
Q ss_pred CCCCcHHHHHHcCCCCEEEEECc
Q 022128 215 VHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
....+. ..+.|+|+..-+
T Consensus 194 --~~L~~~---~~~ADIvV~AvG 211 (288)
T PRK14171 194 --HNLSSI---TSKADIVVAAIG 211 (288)
T ss_pred --CCHHHH---HhhCCEEEEccC
Confidence 111222 346687776554
No 322
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=46.69 E-value=49 Score=28.71 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=44.1
Q ss_pred CCCeEEEeCCC-----CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022128 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 49 ~g~~IlitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~ 123 (302)
.+.+|++.... ...+++.+.+++.|+.....+.+.-....+...+.+. +.+.|.|+|+..+... +.+.|..
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~---l~~ad~I~~~GG~~~~-~~~~l~~ 103 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVAR---LRDADGIFFTGGDQLR-ITSALGG 103 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHH---HHhCCEEEEeCCcHHH-HHHHHcC
Confidence 45667766543 3466788889999987555544432222233334443 4678999999999976 4454543
No 323
>PLN02409 serine--glyoxylate aminotransaminase
Probab=46.58 E-value=59 Score=30.92 Aligned_cols=62 Identities=21% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCh
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSP 111 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~ 111 (302)
.|.+||++.+..-...+...++..|+++..+|.-.-. ..+.+.+++.+... .+...|++++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~-~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQ-GADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCCC-CCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 5789999997665666778888899999988853211 12456777777432 26788888765
No 324
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=46.22 E-value=84 Score=24.17 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred CceEEEE--CHHHHHHHHH-cCCCeEEecCCC-ChHHHHHHHHHHHHccC
Q 022128 255 SNSVACI--GETTASAAKR-LGLKNVYYPTHP-GLEGWVDSILEALREHG 300 (302)
Q Consensus 255 ~~~i~~I--G~~Ta~~l~~-~G~~~~~v~~~~-~~~~ll~~i~~~~~~~~ 300 (302)
..+|+++ .+.+++.|.- .|+.++++.+.. +.+.+++...+++.+++
T Consensus 39 ~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~~~~~g 88 (117)
T PF02887_consen 39 KVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEALEYAKERG 88 (117)
T ss_dssp SSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHHHHHHHHcC
Confidence 3556655 6777777664 377776666666 89999999988877654
No 325
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=46.12 E-value=1.6e+02 Score=25.71 Aligned_cols=78 Identities=14% Similarity=0.038 Sum_probs=45.5
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CC-ccEEEEeChHHHHHHH-HHHHHcCCCCceEE
Q 022128 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TI-FDWIIITSPEAGSVFL-EAWKEAGTPNVRIG 132 (302)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~-~d~IifTS~~av~~f~-~~l~~~~~~~~~i~ 132 (302)
++-+...++.+.|+++|..+..+.= ... ....+.+.+..+ .. +--.|+||.......+ ..+.+.+.+.-+++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN-~~~---~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSN-SPR---NIFSLHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDIRNGIIY 99 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeC-CCC---ChHHHHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccCCCceEE
Confidence 4456788999999999998876543 111 112222334333 32 2236667776544433 33344445566799
Q ss_pred EEChhh
Q 022128 133 VVGAGT 138 (302)
Q Consensus 133 aVG~~T 138 (302)
.||...
T Consensus 100 ~vGd~~ 105 (242)
T TIGR01459 100 LLGHLE 105 (242)
T ss_pred EeCCcc
Confidence 999865
No 326
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.09 E-value=2.2e+02 Score=25.95 Aligned_cols=148 Identities=15% Similarity=0.107 Sum_probs=79.3
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChH--HHH--HHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~--av~--~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|- ..+ ..++.+.. ...+++.-.-+|.
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~- 123 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDA---TTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGR- 123 (279)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHH-
Confidence 44567779887655442221 2234444443 45678999988773 221 12221111 0112222222221
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
|. . |-. .+.| -|+.+..+.|..+.. .|++++++ |+.....-|...|...|+.|+.+.-..
T Consensus 124 ----l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--- 186 (279)
T PRK14178 124 ----LV-S------GLP-GFAP--CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--- 186 (279)
T ss_pred ----Hh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---
Confidence 11 1 221 2344 367787777765532 68898888 554666678888888998886654321
Q ss_pred CCCCcHHHHHHcCCCCEEEEECcHH
Q 022128 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
..+.+.+.+.|+|+-+-+..
T Consensus 187 -----~~L~~~~~~ADIvI~Avgk~ 206 (279)
T PRK14178 187 -----ENLKAELRQADILVSAAGKA 206 (279)
T ss_pred -----hHHHHHHhhCCEEEECCCcc
Confidence 11222345778888777644
No 327
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=46.04 E-value=17 Score=31.31 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
++.++.|.+.|++-++++.+.|.-+.+. .+.+.++.+..||+||+..--
T Consensus 31 ~~GAd~Ll~~Lr~g~~dv~yMpAH~~q~-----~FPqtme~L~~YDaivlSDiG 79 (254)
T COG5426 31 HEGADPLLKALRGGEYDVTYMPAHDAQE-----KFPQTMEGLDAYDAIVLSDIG 79 (254)
T ss_pred ccCchHHHHHHhCCCcceEEechHHHHH-----hcchhhhhhcccceEEEeecC
Confidence 4568999999999999999999866542 234455567889999986543
No 328
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=45.60 E-value=99 Score=26.96 Aligned_cols=70 Identities=19% Similarity=0.060 Sum_probs=45.0
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEE--EeChHHHHHHH
Q 022128 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWII--ITSPEAGSVFL 118 (302)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~Ii--fTS~~av~~f~ 118 (302)
..+.|++++||-.. +=...+++.|.+.|++++..- +- +...+.+..+. ....+- +|++.+++.++
T Consensus 3 ~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~--r~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 3 GILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY--QN------DRMKKSLQKLVDEEDLLVECDVASDESIERAF 74 (252)
T ss_pred cccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec--Cc------hHHHHHHHhhccCceeEEeCCCCCHHHHHHHH
Confidence 56789999999975 567889999999999987541 11 11222222221 111221 58899999888
Q ss_pred HHHHH
Q 022128 119 EAWKE 123 (302)
Q Consensus 119 ~~l~~ 123 (302)
+.+.+
T Consensus 75 ~~~~~ 79 (252)
T PRK06079 75 ATIKE 79 (252)
T ss_pred HHHHH
Confidence 87654
No 329
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=45.48 E-value=37 Score=28.31 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=35.8
Q ss_pred CCceeccCCCccHHHHHHhcccCCCC-CCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 152 SLDVAFSPSKATGKILASELPKNGKK-KCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 152 G~~~~~~p~~~~~e~L~~~L~~~~~~-~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
|+.+.|.+...+++..++.+...... +.+|.++.++.. +.......|+.+
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~---iq~~~~~~GA~~ 117 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDRE---IQRAARGRGAKR 117 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHH---HHHHHhhCCCEE
Confidence 88888888888888888877655443 578888888765 444455666544
No 330
>PRK01355 azoreductase; Reviewed
Probab=45.35 E-value=49 Score=28.23 Aligned_cols=56 Identities=18% Similarity=0.305 Sum_probs=34.5
Q ss_pred hHHHHHHh--CCCeeEEEeeeeeecCC--------------CCcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhh
Q 022128 192 EIEEGLSN--RGFEVVRLNTYTTEPVH--------------HVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (302)
Q Consensus 192 ~L~~~L~~--~G~~v~~~~vY~~~~~~--------------~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l 248 (302)
.+.+.+++ .|.+|+.+.+|+..... ....+..+.+...|.|||.|| ..++ .|++.+
T Consensus 25 ~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~LK-~~iDrv 103 (199)
T PRK01355 25 KFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPATLK-NYLDHI 103 (199)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHHHH-HHHHHH
Confidence 35556666 35788888888664321 111223334567899999998 4567 677665
No 331
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=45.13 E-value=35 Score=25.00 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=26.8
Q ss_pred CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 187 ~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
+.+-..+.+.|++.|++|..+.-+. .+..+|++++|-
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l~~~~-------------~~~~~daiVvtG 43 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDLENEQ-------------DLQNVDAIVVTG 43 (80)
T ss_pred cCCchHHHHHHHHCCCEEEecCCcc-------------ccCCcCEEEEEC
Confidence 3455678999999998887665221 145889999886
No 332
>PRK09739 hypothetical protein; Provisional
Probab=44.44 E-value=60 Score=27.59 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC----------------CchHHHHHHhcCCCccEEEEeChH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP----------------DTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~----------------~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
+.+.+.+++.|.++..+-+++....+ ..+.+.+..+.+...|.|||.+|.
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 89 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPL 89 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECch
Confidence 44556677788888877766532100 012344555566778899988884
No 333
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=44.14 E-value=2.7e+02 Score=25.98 Aligned_cols=207 Identities=9% Similarity=0.079 Sum_probs=108.1
Q ss_pred CCCCCCeEEEeCCC--CChHHHH------HHHHhCCCc--EEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 46 ASNSNPKVVVTRER--GKNGKLI------KALAKHRID--CLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 46 ~~l~g~~IlitR~~--~~~~~l~------~~L~~~G~~--v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
.+++|+.|++..+. +.++.+. ..|++.|+. ...+|.+-.-. .| ... .. -.+-+++
T Consensus 64 ~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaR-QD-----r~~---~~------~e~isak 128 (330)
T PRK02812 64 ESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYAR-AD-----RKT---AG------RESITAK 128 (330)
T ss_pred CCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEecccccc-cc-----ccc---CC------CCCchHH
Confidence 46789999888763 3345544 455678875 34445544321 11 111 11 1133555
Q ss_pred HHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHH
Q 022128 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (302)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~ 195 (302)
.+.+.+...|.+ +++++-..+.+ ++.+| .++++.. .....+++.|.+.. ..+++++..+.+.-.+..
T Consensus 129 ~vA~lL~~~g~d--~vitvDlH~~~-~~~fF-----~ipv~nl---~~~~~l~~~i~~~~--~~~~vvVsPD~gg~~ra~ 195 (330)
T PRK02812 129 LVANLITKAGAD--RVLAMDLHSAQ-IQGYF-----DIPCDHV---YGSPVLLDYLASKN--LEDIVVVSPDVGGVARAR 195 (330)
T ss_pred HHHHHHHhcCCC--EEEEEECCchH-HcCcc-----CCCceee---eChHHHHHHHHhcC--CCCeEEEEECCccHHHHH
Confidence 666666665543 67777777643 44443 3332211 23445556664432 245677777777666666
Q ss_pred HHHhC--CCeeEEEeeeeeecCCCCcH--HHHHHcCCCCEE----EEECcHHHHHHHHHhhhcccCCCceEEE----ECH
Q 022128 196 GLSNR--GFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVV----AVASPSAVRSSWVNLISDTEQWSNSVAC----IGE 263 (302)
Q Consensus 196 ~L~~~--G~~v~~~~vY~~~~~~~~~~--~~~~~~~~~d~i----vftS~s~v~~~~~~~l~~~~~~~~~i~~----IG~ 263 (302)
.+.+. |..+..+ ++......... .......+-++| +++++.++. ...+.+++.+...+.++| .++
T Consensus 196 ~~A~~L~~~~~~~~--~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~-~a~~~L~~~Ga~~v~~~~tH~v~s~ 272 (330)
T PRK02812 196 AFAKKLNDAPLAII--DKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTIC-EGARLLRKEGAKQVYACATHAVFSP 272 (330)
T ss_pred HHHHHhCCCCEEEE--EeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHH-HHHHHHhccCCCeEEEEEEcccCCh
Confidence 66554 3333322 23322111100 000011222333 358888888 888888775433444555 456
Q ss_pred HHHHHHHHcCCCeEEecCCC
Q 022128 264 TTASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 264 ~Ta~~l~~~G~~~~~v~~~~ 283 (302)
...+.+++.++..+++.+..
T Consensus 273 ~a~~~l~~~~id~iv~tnti 292 (330)
T PRK02812 273 PAIERLSSGLFEEVIVTNTI 292 (330)
T ss_pred HHHHHHhhCCCCEEEEeCCC
Confidence 66667776788877766553
No 334
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=44.12 E-value=2.5e+02 Score=25.61 Aligned_cols=183 Identities=11% Similarity=0.060 Sum_probs=86.3
Q ss_pred hcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH--HhhccCCCCceeccC---CCccHHHHHHhcc
Q 022128 98 NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE--VIQSSKCSLDVAFSP---SKATGKILASELP 172 (302)
Q Consensus 98 ~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~--~~~~~~~G~~~~~~p---~~~~~e~L~~~L~ 172 (302)
..+...|.||+.|....+.+.+.+... ..+.++-.|-.+...... . . .......++. ..-..+.+++.+.
T Consensus 153 ~~~~~~d~ii~~s~~~~~~l~~~~~~~--~~v~~ip~g~~~~~~~~~~~~-~--~~~~~i~~vgrl~~~K~~~~li~a~~ 227 (372)
T cd04949 153 ENLDKVDGVIVATEQQKQDLQKQFGNY--NPIYTIPVGSIDPLKLPAQFK-Q--RKPHKIITVARLAPEKQLDQLIKAFA 227 (372)
T ss_pred hChhhCCEEEEccHHHHHHHHHHhCCC--CceEEEcccccChhhcccchh-h--cCCCeEEEEEccCcccCHHHHHHHHH
Confidence 345678999999998888776654321 112233333332221111 1 0 0012222221 1123445555555
Q ss_pred cCCC--CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHH-HHHHHhhh
Q 022128 173 KNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-SSWVNLIS 249 (302)
Q Consensus 173 ~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~-~~~~~~l~ 249 (302)
.... ++-++.+.........+.+.....|..- .+. +.- . .. ++.+.+...|+++++|-..-- ..+++.+
T Consensus 228 ~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~-~v~-~~g-~-~~---~~~~~~~~ad~~v~~S~~Eg~~~~~lEAm- 299 (372)
T cd04949 228 KVVKQVPDATLDIYGYGDEEEKLKELIEELGLED-YVF-LKG-Y-TR---DLDEVYQKAQLSLLTSQSEGFGLSLMEAL- 299 (372)
T ss_pred HHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcc-eEE-EcC-C-CC---CHHHHHhhhhEEEecccccccChHHHHHH-
Confidence 4321 3445665544444555555555544321 111 111 1 11 122334578999999864111 0122222
Q ss_pred cccCCCceEEEE--CHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 250 DTEQWSNSVACI--GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 250 ~~~~~~~~i~~I--G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
..++++++- |....+.+.+ |..-.+ .+..+.++|+++|.+.+..
T Consensus 300 ---a~G~PvI~~~~~~g~~~~v~~-~~~G~l-v~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 300 ---SHGLPVISYDVNYGPSEIIED-GENGYL-VPKGDIEALAEAIIELLND 345 (372)
T ss_pred ---hCCCCEEEecCCCCcHHHccc-CCCceE-eCCCcHHHHHHHHHHHHcC
Confidence 225677764 2123333433 433333 3556899999999888754
No 335
>TIGR01308 rpmD_bact ribosomal protein L30, bacterial/organelle. This model describes bacterial (and organellar) 50S ribosomal protein L30. Homologous ribosomal proteins of the eukaryotic cytosol and of the archaea differ substantially in architecture, from bacterial L30 and also from each other, and are described by separate models.
Probab=43.93 E-value=35 Score=22.99 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=29.0
Q ss_pred CHHHHHHHHHcCCC----eEEecCCCChHHHHHHHHHHH
Q 022128 262 GETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 262 G~~Ta~~l~~~G~~----~~~v~~~~~~~~ll~~i~~~~ 296 (302)
-+...+.++.+|++ .++..+.|+..+|++.+..++
T Consensus 13 ~~~~r~tl~~LgL~k~~~~v~~~dtp~irGMi~kV~~lV 51 (55)
T TIGR01308 13 PKKQRKTLKALGLRKIGRQVVLEDNPAIRGMVNKVKHLV 51 (55)
T ss_pred CHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHheE
Confidence 46678889999997 367789999999999987764
No 336
>PRK05611 rpmD 50S ribosomal protein L30; Reviewed
Probab=43.76 E-value=39 Score=23.09 Aligned_cols=36 Identities=17% Similarity=0.369 Sum_probs=30.1
Q ss_pred ECHHHHHHHHHcCCC----eEEecCCCChHHHHHHHHHHH
Q 022128 261 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 261 IG~~Ta~~l~~~G~~----~~~v~~~~~~~~ll~~i~~~~ 296 (302)
..+...+.++.+|++ .++.++.|+..||++.+..++
T Consensus 15 ~~~~~r~tl~~LgL~k~~~~v~~~dtp~~rGmi~kV~~lV 54 (59)
T PRK05611 15 RKPKQRATLRGLGLRKINSTVELEDTPAIRGMINKVSHLV 54 (59)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHhHhhE
Confidence 457788899999997 367899999999999998764
No 337
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.68 E-value=2.1e+02 Score=24.65 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=50.1
Q ss_pred CCeEEEeCCCCC------hHHHHHHHHhCCCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 50 NPKVVVTRERGK------NGKLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~~------~~~l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
.++|++..+... ..-+.+.++++|..+...+........+ .+.+.+.++.-.+.|+|+.++-.....+.+
T Consensus 109 ~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 188 (265)
T cd01543 109 FRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLE 188 (265)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHH
Confidence 456666653322 1335567778887663222211111111 123445553334578888888788777888
Q ss_pred HHHHcCC---CCceEEEEChh
Q 022128 120 AWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 120 ~l~~~~~---~~~~i~aVG~~ 137 (302)
.+.+.++ +++.+++.+..
T Consensus 189 ~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 189 ACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred HHHHhCCCCCCceEEEeeCCc
Confidence 8887775 36777777754
No 338
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=43.65 E-value=2.1e+02 Score=26.88 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=46.7
Q ss_pred cHHHHHHhcccCCCCCCEEEEeCCCc-----c---hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEE
Q 022128 163 TGKILASELPKNGKKKCTVLYPASAK-----A---SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVV 232 (302)
Q Consensus 163 ~~e~L~~~L~~~~~~~~~vL~~rg~~-----~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i 232 (302)
-+..+++.+..+.. +++.++..+. . .+.|.+.+++.|.+|.....|... +.+...++..+ .. ++|
T Consensus 124 ~~~a~~~ll~~~~W--~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~--~~d~~~~l~~ik~~~-rvi 198 (387)
T cd06386 124 MGETFSALFERFHW--RSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFDETK--DLDLDEIIRAIQASE-RVV 198 (387)
T ss_pred HHHHHHHHHHhCCC--eEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEEecCCCC--cccHHHHHHHHHhcC-cEE
Confidence 44555555533332 4554443222 1 567888999999888655444322 12223334433 24 555
Q ss_pred EEE-CcHHHHHHHHHhhhccc
Q 022128 233 AVA-SPSAVRSSWVNLISDTE 252 (302)
Q Consensus 233 vft-S~s~v~~~~~~~l~~~~ 252 (302)
++. ++..++ .++..+.+..
T Consensus 199 i~~~~~~~~~-~ll~~A~~~g 218 (387)
T cd06386 199 IMCAGADTIR-SIMLAAHRRG 218 (387)
T ss_pred EEecCHHHHH-HHHHHHHHcC
Confidence 544 888888 8887776643
No 339
>cd01658 Ribosomal_L30 Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of the smallest ribosomal proteins with a molecular mass of about 7kDa. L30 binds the 23SrRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The eukaryotic L30 members have N- and/or C-terminal extensions not found in their prokaryotic orthologs. L30 is closely related to the ribosomal L7 protein found in eukaryotes and archaea.
Probab=43.46 E-value=32 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=29.6
Q ss_pred ECHHHHHHHHHcCCC----eEEecCCCChHHHHHHHHHHH
Q 022128 261 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 261 IG~~Ta~~l~~~G~~----~~~v~~~~~~~~ll~~i~~~~ 296 (302)
..+...+.++.+|++ .+++++.|+..+|+..++.++
T Consensus 12 ~~~~~r~tl~~LgL~k~~~~v~~~~tp~~~Gml~kV~~lV 51 (54)
T cd01658 12 RPKKQRATLKALGLKKINQTVVHKDTPSIRGMINKVKHLV 51 (54)
T ss_pred CCHHHHHHHHHcCCCcCCCEEEecCCHHHHHHHHHHhheE
Confidence 356778899999997 367899999999999987754
No 340
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.12 E-value=97 Score=26.87 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=44.0
Q ss_pred CCCEEEEeCCC-----cchhhHHHHHHhCCCe-eEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhc
Q 022128 177 KKCTVLYPASA-----KASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 177 ~~~~vL~~rg~-----~~~~~L~~~L~~~G~~-v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
.+.+|+++... ...+.+.+.+++.|+. +..+.+.++... ...++.+.+.+.|+|+|+..++.+ .. +.+.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a--~~~~~~~~l~~ad~I~~~GG~~~~-~~-~~l~~ 103 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAA--NDPEVVARLRDADGIFFTGGDQLR-IT-SALGG 103 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHc--CCHHHHHHHHhCCEEEEeCCcHHH-HH-HHHcC
Confidence 35677777554 3355678888889985 555555444321 223344456789999999999887 43 44433
No 341
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=42.94 E-value=61 Score=27.56 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=20.6
Q ss_pred CCCCeEEEeCCCC-----------------ChHHHHHHHHhCCCcEEEe
Q 022128 48 NSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 48 l~g~~IlitR~~~-----------------~~~~l~~~L~~~G~~v~~~ 79 (302)
+.|++||||-... ....+++.+..+|++|..+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li 49 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLI 49 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEE
Confidence 3577777775431 2467888999999999865
No 342
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=42.87 E-value=2.6e+02 Score=25.69 Aligned_cols=21 Identities=19% Similarity=0.031 Sum_probs=15.7
Q ss_pred CCCccEEEEeChHHHHHHHHH
Q 022128 100 DTIFDWIIITSPEAGSVFLEA 120 (302)
Q Consensus 100 l~~~d~IifTS~~av~~f~~~ 120 (302)
+...|.|+++|..-.+.+.+.
T Consensus 142 ~~~ad~vi~~S~~~~~~~~~~ 162 (388)
T TIGR02149 142 IEAADRVIAVSGGMREDILKY 162 (388)
T ss_pred HhhCCEEEEccHHHHHHHHHH
Confidence 356899999999877766543
No 343
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=42.85 E-value=99 Score=29.62 Aligned_cols=35 Identities=17% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCC-----------------ChHHHHHHHHhCCCcEEEec
Q 022128 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLELP 80 (302)
Q Consensus 46 ~~l~g~~IlitR~~~-----------------~~~~l~~~L~~~G~~v~~~P 80 (302)
+++.|++||||-... -...+++.|..+|++|+.+-
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 468899999998632 45779999999999987653
No 344
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=42.62 E-value=82 Score=27.13 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 93 l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
+.+.+..-.++++|+.++-..+....+.+.+.+++++.++..+...
T Consensus 172 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~~ 217 (268)
T cd06323 172 MENILQAHPDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGTP 217 (268)
T ss_pred HHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 3344433345677777776666666777777666556666665543
No 345
>PRK09004 FMN-binding protein MioC; Provisional
Probab=42.59 E-value=64 Score=26.13 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH--------HHHHHHHHHHHc--CCCCceEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEA--GTPNVRIG 132 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~--------av~~f~~~l~~~--~~~~~~i~ 132 (302)
..+.+.+++.|+++..+.+. + +. ++.++|.+||.++. ..+.|.+.+.+. .+.+++++
T Consensus 20 ~~l~~~~~~~g~~~~~~~~~------~---~~----~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a 86 (146)
T PRK09004 20 DHLAEKLEEAGFSTETLHGP------L---LD----DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA 86 (146)
T ss_pred HHHHHHHHHcCCceEEeccC------C---HH----HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE
Confidence 44556677788887754321 1 11 33456666555432 356677767654 35667776
Q ss_pred EEChh
Q 022128 133 VVGAG 137 (302)
Q Consensus 133 aVG~~ 137 (302)
+.|-+
T Consensus 87 VfGlG 91 (146)
T PRK09004 87 AIGIG 91 (146)
T ss_pred EEeec
Confidence 66643
No 346
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.51 E-value=1.4e+02 Score=26.63 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHhcccCCC-CCCEEEEeCCCcc-----hhhHHHHHHhCCCe-eEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHH
Q 022128 167 LASELPKNGK-KKCTVLYPASAKA-----SNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 167 L~~~L~~~~~-~~~~vL~~rg~~~-----~~~L~~~L~~~G~~-v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
+.+.+.+... .+.||+++....+ .+...+.|+..|++ |..+.++.+.... .++..+.+.+.|+|+|+..++
T Consensus 16 i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~--~~~~~~~l~~ad~I~~~GGnq 93 (250)
T TIGR02069 16 ILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDAS--DENAIALLSNATGIFFTGGDQ 93 (250)
T ss_pred HHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHcc--CHHHHHHHhhCCEEEEeCCCH
Confidence 4455543332 3347777753222 23567788999984 7777776544222 223344467899999999999
Q ss_pred HHHHHHHhhh
Q 022128 240 VRSSWVNLIS 249 (302)
Q Consensus 240 v~~~~~~~l~ 249 (302)
.+ . .+.++
T Consensus 94 ~~-l-~~~l~ 101 (250)
T TIGR02069 94 LR-I-TSLLG 101 (250)
T ss_pred HH-H-HHHHc
Confidence 88 4 34443
No 347
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=42.44 E-value=1.3e+02 Score=22.40 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=20.4
Q ss_pred CEEEEeCCCcc------hhhHHHHHHhCCCee
Q 022128 179 CTVLYPASAKA------SNEIEEGLSNRGFEV 204 (302)
Q Consensus 179 ~~vL~~rg~~~------~~~L~~~L~~~G~~v 204 (302)
.+||+.||.+- ...+.+.|+++|.++
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~ 34 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 34 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeE
Confidence 47999999886 456668888999864
No 348
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
Probab=42.37 E-value=1.5e+02 Score=27.82 Aligned_cols=89 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCC--CCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCC
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVH--HVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQW 254 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~--~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~ 254 (302)
.+.|.-|.+.. =.+.|.+.|++.|+.+..+...-=.-.- -..+. ++...-..=...-|.++++ .+...- . .
T Consensus 173 ~GsVAAPTAGLHFt~~ll~~L~~kGv~~a~vTLHVG~GTF~PV~~ed-i~~H~mH~E~~~I~~~ta~-~i~~ak-~---~ 246 (342)
T PRK00147 173 PGAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRVED-IEEHKMHSEWYEVPQETAD-AINAAK-A---R 246 (342)
T ss_pred CCceecCCCccCCCHHHHHHHHHCCCcEEEEEEeecCCCCcCcccCc-cccCCcccEEEEECHHHHH-HHHHHH-H---c
Confidence 34566665443 3678999999999998776664322111 00011 1111111223555777777 554332 2 2
Q ss_pred CceEEEECHHHHHHHHHc
Q 022128 255 SNSVACIGETTASAAKRL 272 (302)
Q Consensus 255 ~~~i~~IG~~Ta~~l~~~ 272 (302)
+.+|+|+|-|+.++|+..
T Consensus 247 G~rIiAVGTT~vRaLEsa 264 (342)
T PRK00147 247 GGRVIAVGTTSVRTLESA 264 (342)
T ss_pred CCeEEEEcccchhhHHHH
Confidence 468999999999999974
No 349
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.34 E-value=1.5e+02 Score=25.99 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 92 ~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.+..-.++|+|+.++-......++.+++.++.++.++..+....
T Consensus 173 ~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~~ 220 (272)
T cd06313 173 IWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDPP 220 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCHH
Confidence 344555433457898888877777778888887775666776665543
No 350
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=42.14 E-value=74 Score=27.51 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEECh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~ 136 (302)
..+.+.|+++|..+...-.+......+ .+.+.+.+......|+|+.++......+...+.+.++ +++.+++.+.
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 137 AGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred HHHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 335567777776543222222111111 1234444433356899999988877778888888775 3455555553
No 351
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=42.02 E-value=1.3e+02 Score=27.55 Aligned_cols=70 Identities=16% Similarity=0.153 Sum_probs=44.7
Q ss_pred CCCCEEEEECcHHHHH--------HHHHhhhcccC--CCceEEEECHHHHHHHHHcCCCe----EEecCCCChHHHHHHH
Q 022128 227 LSIPVVAVASPSAVRS--------SWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSI 292 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~--------~~~~~l~~~~~--~~~~i~~IG~~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i 292 (302)
.+..+|++||-..+=+ .....+..... ....+++||.+..+.+...|++. .-..+.|+.+.+.+..
T Consensus 71 kr~~~IviTSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~ 150 (287)
T COG0224 71 KRVLYIVITSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIA 150 (287)
T ss_pred CceEEEEEecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHH
Confidence 3567788888654332 22223332211 23679999999999999998864 2346778888776655
Q ss_pred HHHH
Q 022128 293 LEAL 296 (302)
Q Consensus 293 ~~~~ 296 (302)
.+.+
T Consensus 151 ~~~~ 154 (287)
T COG0224 151 DKIL 154 (287)
T ss_pred HHHH
Confidence 5544
No 352
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=41.95 E-value=2.7e+02 Score=25.37 Aligned_cols=164 Identities=13% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCccEEEEe--ChHHHHHHHHHHHHcCCCCceEEEEChhhHH-HHHHHhhccCCCCceeccCCCcc-HH----HHHHhcc
Q 022128 101 TIFDWIIIT--SPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSKAT-GK----ILASELP 172 (302)
Q Consensus 101 ~~~d~IifT--S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~-~l~~~~~~~~~G~~~~~~p~~~~-~e----~L~~~L~ 172 (302)
.+.|+||+. ........++.+.+ .++++++++..... .+... .....+..+.+. ++ .|++.+.
T Consensus 80 ~~vdgiIi~~~~~~~~~~~l~~l~~---~giPvV~vd~~~~~~~~~~~------~~~~~V~~D~~~ag~~a~~~l~~~~~ 150 (330)
T PRK15395 80 KGVKALAINLVDPAAAPTVIEKARG---QDVPVVFFNKEPSRKALDSY------DKAYYVGTDSKESGIIQGDLIAKHWK 150 (330)
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHH---CCCcEEEEcCCccccccccc------cceeEEccChHHHHHHHHHHHHHHHh
Confidence 579999986 33344444455544 46789999874311 11111 100112222222 22 2333321
Q ss_pred cC-----CCCC-CEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-cC-----CCCEEE
Q 022128 173 KN-----GKKK-CTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-AL-----SIPVVA 233 (302)
Q Consensus 173 ~~-----~~~~-~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~-----~~d~iv 233 (302)
.. ...+ .+++++.|.... .-+.+.|++.|..+.....+..........+..+. +. ++++|+
T Consensus 151 ~~~~~~~~~~g~~~i~~i~g~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~ 230 (330)
T PRK15395 151 ANPAWDLNKDGKIQYVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 230 (330)
T ss_pred hccccccCCCCceEEEEEecCCCCchHHHHHHHHHHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEE
Confidence 10 0122 245666554332 23456777788765543221111111111112222 21 468888
Q ss_pred EECcHHHHHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCC
Q 022128 234 VASPSAVRSSWVNLISDTEQWSNSVACIGET-TASAAKRLGL 274 (302)
Q Consensus 234 ftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~-Ta~~l~~~G~ 274 (302)
..|-..+. ..++.+++.....+++++++.. .+..+..-|.
T Consensus 231 ~~~d~~A~-gvl~al~~~Gl~~vpVvg~D~~~~~~~~~~~g~ 271 (330)
T PRK15395 231 ANNDAMAM-GAVEALKAHNKSSIPVFGVDALPEALALVKSGA 271 (330)
T ss_pred ECCchHHH-HHHHHHHhcCCCCCeEEeeCCCHHHHHHHHhCC
Confidence 88877777 6777776654324567777543 3333333344
No 353
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.79 E-value=2.8e+02 Score=25.42 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=68.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
-.+.+++.|+++..+-+-+.. ..+++.+.+. .....|.|+.--|---..-...+.+.-.+..-+=.+.+.-...
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~ 128 (286)
T PRK14184 52 KERACEDAGIVSEAFRLPADT---TQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGR 128 (286)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcccCcccCCHhhHHH
Confidence 345677789888765442221 2234444443 4467889998877221111111111100111111111211111
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHh----CCCeeEEEe
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSN----RGFEVVRLN 208 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~----~G~~v~~~~ 208 (302)
|- . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.+ +|+.|+.+.
T Consensus 129 l~-~------~~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~h 192 (286)
T PRK14184 129 LA-L------GLP-GFRP--CTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCH 192 (286)
T ss_pred Hh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEe
Confidence 11 1 221 2444 36778777777554 268888777 777777788999988 788886554
No 354
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=41.78 E-value=3e+02 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=25.9
Q ss_pred CceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022128 255 SNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 255 ~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~ 295 (302)
+++++.+|++ ....+.|.+.+.+ ..+.+.+++++.+.
T Consensus 300 g~Pvv~l~~R--~e~~~~g~nvl~v--g~~~~~I~~a~~~~ 336 (365)
T TIGR03568 300 GVPTINIGTR--QKGRLRADSVIDV--DPDKEEIVKAIEKL 336 (365)
T ss_pred CCCEEeecCC--chhhhhcCeEEEe--CCCHHHHHHHHHHH
Confidence 6789999963 3444667765434 45788899888873
No 355
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.77 E-value=1.2e+02 Score=29.20 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCCCCCeEEEeCC----------------CC-ChHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (302)
.++.|++||||-. .+ -...++..|..+|++|..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 5689999999987 34 3678999999999999765
No 356
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=41.32 E-value=3.5e+02 Score=26.41 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=104.7
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cC
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~ 125 (302)
..+-.++.+.|+..|+++..+|-+. -.+..+ ..+++ +.+..+...-|..++.+ ..+.+.|++ .+
T Consensus 181 ~~D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~G 257 (455)
T PRK14476 181 PGDIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGG-TTLEE-IRELGRSAATIAIGESM-RKAAEALEARTG 257 (455)
T ss_pred cccHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCC-CCHHH-HHhhccCcEEEEecHHH-HHHHHHHHHHhC
Confidence 3567899999999999999887543 111111 12333 23556666666677764 466666765 34
Q ss_pred CCCceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHh
Q 022128 126 TPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (302)
Q Consensus 126 ~~~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~ 199 (302)
.+-+.+ .-+|- .|.+.+++...- -|.. +|+... -+.+.+.+.+.. ..|+++.+..+..-.--|.+.|.+
T Consensus 258 iP~~~~~~p~G~~~t~~~l~~l~~~--~g~~---~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~e 332 (455)
T PRK14476 258 VPYLVFPSLTGLEAVDRFIATLAQI--SGRP---VPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAE 332 (455)
T ss_pred CCeEecCCCcChHHHHHHHHHHHHH--HCCC---CcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHH
Confidence 442222 22564 566666655210 0432 122111 111333333211 257898877766556678899999
Q ss_pred CCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeE
Q 022128 200 RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 277 (302)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~ 277 (302)
.|.++..+.+.... + ..+.+. .+-+++.-...++ +.+. +..++.-+......++++|+..+
T Consensus 333 lG~~v~~~~~~~~~------~-~~~~~~-~~~i~~~D~~~le----~~~~-----~~dliig~s~~~~~a~~~gip~~ 393 (455)
T PRK14476 333 MGAEIVAAVTTTKS------P-ALEDLP-AEEVLIGDLEDLE----ELAE-----GADLLITNSHGRQAAERLGIPLL 393 (455)
T ss_pred CCCEEEEEEeCCCc------H-HHHhCC-cCcEEeCCHHHHH----Hhcc-----CCCEEEECchhHHHHHHcCCCEE
Confidence 99999776665411 1 112232 2334454444444 3332 23455556666777777787653
No 357
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.29 E-value=1.6e+02 Score=25.30 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcc-----hhhHHHHHHhC-CCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
.+.|.+.+......+.+|+|+..... -....+.+... |+++..+.+.. .. +..+.+.+.|+|+++-.
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~~---~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----TE---DPLDALLEADVIYVGGG 89 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----cc---cHHHHHhcCCEEEECCc
Confidence 34444444443334578888865543 23467788888 99888777755 11 12334568899999997
Q ss_pred HHHHHHHHHhhhc
Q 022128 238 SAVRSSWVNLISD 250 (302)
Q Consensus 238 s~v~~~~~~~l~~ 250 (302)
+..+ +++.+++
T Consensus 90 ~~~~--~~~~l~~ 100 (212)
T cd03146 90 NTFN--LLAQWRE 100 (212)
T ss_pred hHHH--HHHHHHH
Confidence 6665 4444444
No 358
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.15 E-value=75 Score=26.33 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=34.7
Q ss_pred hCCCcEEEeceEEeeeC---C-----CchHHHHHHhcCCCccEEEEeChH-------HHHHHHHHHHHcCCCCceEEEE
Q 022128 71 KHRIDCLELPLIQHAQG---P-----DTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 71 ~~G~~v~~~P~~~~~~~---~-----~~~~l~~~l~~l~~~d~IifTS~~-------av~~f~~~l~~~~~~~~~i~aV 134 (302)
+.|+++..+-+.++.+. . ..+.+.+..+.+...|.|||.||. ..+.|++.+....+.+.+++.+
T Consensus 29 ~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v 107 (174)
T TIGR03566 29 RLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDPNALIGKPVLLA 107 (174)
T ss_pred hcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCHhHhCCCEEEEE
Confidence 45777766655443111 0 123455555566789999999983 4455555443222445554433
No 359
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=41.13 E-value=1e+02 Score=29.91 Aligned_cols=87 Identities=14% Similarity=0.050 Sum_probs=48.7
Q ss_pred ccHHHHHHhcccCCCCCCEEEEeCC-----CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc---CCCCE-E
Q 022128 162 ATGKILASELPKNGKKKCTVLYPAS-----AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPV-V 232 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~~vL~~rg-----~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~-i 232 (302)
.-+..+++.+..+.. ++|.++.. ....+.+.+.+++.|+.|.....|.......+....+..+ .+.++ |
T Consensus 160 ~qa~ai~~ll~~~~W--~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVv 237 (458)
T cd06375 160 YQAKAMAEILRFFNW--TYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVV 237 (458)
T ss_pred HHHHHHHHHHHHCCC--eEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 345566666644332 46666643 2345677788888997765544443322111112223332 36775 6
Q ss_pred EEECcHHHHHHHHHhhhcc
Q 022128 233 AVASPSAVRSSWVNLISDT 251 (302)
Q Consensus 233 vftS~s~v~~~~~~~l~~~ 251 (302)
++.+...+. .++..+.+.
T Consensus 238 l~~~~~~~~-~ll~~a~~~ 255 (458)
T cd06375 238 LFTRSEDAR-ELLAAAKRL 255 (458)
T ss_pred EecChHHHH-HHHHHHHHc
Confidence 666777777 777776654
No 360
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=41.09 E-value=2.7e+02 Score=25.64 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=5.1
Q ss_pred EEEChhhHHHH
Q 022128 132 GVVGAGTASIF 142 (302)
Q Consensus 132 ~aVG~~Ta~~l 142 (302)
++++.++.+.+
T Consensus 84 I~~t~G~~~~i 94 (356)
T PRK04870 84 VLLGNGSDELI 94 (356)
T ss_pred EEEcCCHHHHH
Confidence 34455554443
No 361
>PRK11249 katE hydroperoxidase II; Provisional
Probab=41.09 E-value=2.3e+02 Score=29.68 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=65.2
Q ss_pred CCCEEEEeCCCcch----hhHHHHHHhCCCeeEEEeeeeeecCCC--C----cHHHHHHc--CCCCEEEEECcH-HHHHH
Q 022128 177 KKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNTYTTEPVHH--V----DQTVLKQA--LSIPVVAVASPS-AVRSS 243 (302)
Q Consensus 177 ~~~~vL~~rg~~~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~--~----~~~~~~~~--~~~d~ivftS~s-~v~~~ 243 (302)
++++|.++-+++.. ..+.+.|+..|+.|..+..-. .++.. . ....+... ..+|+|++.... .++ .
T Consensus 596 ~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~-G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~-~ 673 (752)
T PRK11249 596 KGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRM-GEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIA-D 673 (752)
T ss_pred cccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CeEECCCCCEEecceeeccCCccCCCEEEECCCchhHH-H
Confidence 67889888887654 367788999998776654311 11110 0 01111111 258999998763 333 3
Q ss_pred HH------HhhhcccCCCceEEEECHHHHHHHHHcCCCe----EEecCCCChHHHHHHHHHHHHccC
Q 022128 244 WV------NLISDTEQWSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 244 ~~------~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
+. .++.+.......|.++|.. ...|.+.|+.. -++....+.+.+++...+.+..|+
T Consensus 674 L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 739 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPDQGEEGLVEADSADGSFMDELLTAMAAHR 739 (752)
T ss_pred HhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCCCCCCeEEecCCccHHHHHHHHHHHHhcC
Confidence 22 2222211123456666654 35677788822 233333455566666666666665
No 362
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=41.07 E-value=1.2e+02 Score=30.01 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=47.4
Q ss_pred ccHHHHHHhcccCCCCCCEEEEeC-----CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE
Q 022128 162 ATGKILASELPKNGKKKCTVLYPA-----SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV 234 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~~vL~~r-----g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf 234 (302)
..+..+++.+..+.. ++|.++. |......+.+.+++.|+.|.....+.......+...++..+ .+.++|++
T Consensus 173 ~q~~Ai~~l~~~f~w--k~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl 250 (510)
T cd06364 173 HQATAMADIIEYFRW--NWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVV 250 (510)
T ss_pred HHHHHHHHHHHHcCC--eEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 345666665544332 4555552 33345678889999998876655554322111111222222 46776555
Q ss_pred -ECcHHHHHHHHHhhhcc
Q 022128 235 -ASPSAVRSSWVNLISDT 251 (302)
Q Consensus 235 -tS~s~v~~~~~~~l~~~ 251 (302)
.+...+. .++..+.+.
T Consensus 251 ~~~~~~~~-~ll~qa~~~ 267 (510)
T cd06364 251 FSSGPDLE-PLIKEIVRR 267 (510)
T ss_pred EeCcHHHH-HHHHHHHHh
Confidence 5556666 676666554
No 363
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.01 E-value=2.9e+02 Score=25.32 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=72.1
Q ss_pred EEEeCCCCChHHHH----HHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChH--HHH--HHHHHH
Q 022128 53 VVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAW 121 (302)
Q Consensus 53 IlitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~--av~--~f~~~l 121 (302)
|+..-..+.+..+. +..++.|+++..+-+-+.. ..+++.+.+. .....|.|+.--|- ... ..++.+
T Consensus 37 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I 113 (284)
T PRK14179 37 VILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETI---SQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAI 113 (284)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhcc
Confidence 34444444443443 5677789888765543322 2234444443 44678899988762 221 122211
Q ss_pred HHc-CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeCC-CcchhhHHHHH
Q 022128 122 KEA-GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGL 197 (302)
Q Consensus 122 ~~~-~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg-~~~~~~L~~~L 197 (302)
.-. ..+++.-+-+|. |- . |- ..+.| -|+.+.++.|..+. ..|+++.++.- ..-..-|...|
T Consensus 114 ~p~KDVDGl~~~N~g~-----l~-~------~~-~~~~P--cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL 178 (284)
T PRK14179 114 DPKKDVDGFHPMNTGH-----LW-S------GR-PVMIP--CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLL 178 (284)
T ss_pred CccccccccCHhhHHH-----Hh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHH
Confidence 110 112222211221 11 1 21 12333 46777777776543 26899988854 66666788889
Q ss_pred HhCCCeeEEE
Q 022128 198 SNRGFEVVRL 207 (302)
Q Consensus 198 ~~~G~~v~~~ 207 (302)
.+.|+.|+.+
T Consensus 179 ~~~gatVtv~ 188 (284)
T PRK14179 179 LDKNATVTLT 188 (284)
T ss_pred HHCCCEEEEE
Confidence 9999988665
No 364
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=40.94 E-value=56 Score=28.02 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=19.7
Q ss_pred HHHHHHcCCCCEEEEECc-------HHHHHHHHHh
Q 022128 220 QTVLKQALSIPVVAVASP-------SAVRSSWVNL 247 (302)
Q Consensus 220 ~~~~~~~~~~d~ivftS~-------s~v~~~~~~~ 247 (302)
+++.+.+...|+|+|.|| +..+ .|++.
T Consensus 67 ~~i~~~l~~aD~iI~gsPvy~g~vsa~~K-~fiDR 100 (207)
T COG0655 67 NEIYEKLLEADGIIFGSPVYFGNVSAQMK-AFIDR 100 (207)
T ss_pred HHHHHHHHHCCEEEEeCCeecCCchHHHH-HHHhh
Confidence 445555678899999998 5667 67766
No 365
>TIGR00035 asp_race aspartate racemase.
Probab=40.81 E-value=77 Score=27.66 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=18.8
Q ss_pred CCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022128 228 SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 228 ~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
++|.|++.+ +++. .|++.+++. .+++++.|.+.|++++++.|.++
T Consensus 75 g~d~iviaC-NTah-~~~~~l~~~--~~iPii~i~~~~~~~~~~~~~~~ 119 (229)
T TIGR00035 75 GADFIIMPC-NTAH-KFAEDIQKA--IGIPLISMIEETAEAVKEDGVKK 119 (229)
T ss_pred CCCEEEECC-ccHH-HHHHHHHHh--CCCCEechHHHHHHHHHHcCCCE
Confidence 345444444 3333 344433331 12444444444444444444443
No 366
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.58 E-value=1.9e+02 Score=26.51 Aligned_cols=148 Identities=14% Similarity=0.088 Sum_probs=78.1
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeChHH--HH--HHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~l~~~d~IifTS~~a--v~--~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+. |++....|.|++--|-- ++ ..++.+... ..+++.-+-.|
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g-- 122 (287)
T PRK14181 48 VKKATDLGMVSKAHRLPSDA---TLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMG-- 122 (287)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHH--
Confidence 44567779888765442221 22334444 44456789999988732 22 122221110 11222222222
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhC----CCeeEEEeee
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLNTY 210 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~----G~~v~~~~vY 210 (302)
.| +. |-...+.| -|+.+.++.|..+. ..|++++++ |++....-|...|.++ |+.|+.+.-+
T Consensus 123 ---~l--~~-----g~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~ 190 (287)
T PRK14181 123 ---KL--LL-----GETDGFIP--CTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ 190 (287)
T ss_pred ---HH--hc-----CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC
Confidence 11 11 32112444 36778777776553 268888777 7777777889999888 7777654332
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 211 TTEPVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
. ....+. ..+.|+|+..-+.
T Consensus 191 T-----~~l~~~---~~~ADIvV~AvG~ 210 (287)
T PRK14181 191 S-----ENLTEI---LKTADIIIAAIGV 210 (287)
T ss_pred C-----CCHHHH---HhhCCEEEEccCC
Confidence 1 111222 3466877765544
No 367
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=40.56 E-value=5.1e+02 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=29.1
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.|++|+++.|....-+....+...|++|+ .+|++.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vt--lv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVT--IVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE--EEEecC
Confidence 47899999998888889999999999864 667664
No 368
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=40.48 E-value=69 Score=23.71 Aligned_cols=55 Identities=9% Similarity=0.185 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
...|++.....++.+++.+|+..+... | .++.. +...+...+ +-.+|+|.++++.
T Consensus 23 ~~~Vl~FE~edDA~RYa~lLEAqd~~~---p--~Ve~i-d~~~i~~fC-~~~gy~~~iv~~g 77 (86)
T PF11360_consen 23 RNVVLMFEDEDDAERYAGLLEAQDFPD---P--TVEEI-DPEEIEEFC-RSAGYEYEIVPPG 77 (86)
T ss_pred CCEEEEEccHHHHHHHHHHHHhcCCCC---C--CeEEE-CHHHHHHHH-HHCCceEEEECCC
Confidence 567888899999999999999988733 3 33322 345666666 4467999999876
No 369
>PRK05670 anthranilate synthase component II; Provisional
Probab=40.41 E-value=2.2e+02 Score=23.83 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=49.9
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcCCCCceEEE
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVRIGV 133 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~~~~~~~~i~a 133 (302)
...-...+.+.|+++|+++..+|..... .+. +..+ ++|.||++ |+.......+.+... ..+++++.
T Consensus 8 ~d~f~~~i~~~l~~~g~~~~v~~~~~~~----~~~----~~~~-~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~PvLG 77 (189)
T PRK05670 8 YDSFTYNLVQYLGELGAEVVVYRNDEIT----LEE----IEAL-NPDAIVLSPGPGTPAEAGISLELIREF-AGKVPILG 77 (189)
T ss_pred CCchHHHHHHHHHHCCCcEEEEECCCCC----HHH----HHhC-CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEEE
Confidence 4455677999999999999887754321 111 2233 38999997 665443344433332 24678887
Q ss_pred EChhhHHHHHHHhhccCCCCce
Q 022128 134 VGAGTASIFEEVIQSSKCSLDV 155 (302)
Q Consensus 134 VG~~Ta~~l~~~~~~~~~G~~~ 155 (302)
|.-+- +.|...+ |-++
T Consensus 78 IClG~-Qlla~al-----Gg~v 93 (189)
T PRK05670 78 VCLGH-QAIGEAF-----GGKV 93 (189)
T ss_pred ECHHH-HHHHHHh-----CCEE
Confidence 77765 4454444 6654
No 370
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=40.35 E-value=3.1e+02 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
.++|+++.+......+...+++.|++|..+.
T Consensus 12 ~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~ 42 (395)
T PRK09288 12 ATRVMLLGSGELGKEVAIEAQRLGVEVIAVD 42 (395)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3578888765445556777888898775444
No 371
>PRK13556 azoreductase; Provisional
Probab=40.28 E-value=77 Score=27.13 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=35.5
Q ss_pred hHHHHHHhC--CCeeEEEeeeeeecCCCCc--------------------------HHHHHHcCCCCEEEEECc------
Q 022128 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QTVLKQALSIPVVAVASP------ 237 (302)
Q Consensus 192 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~~--------------------------~~~~~~~~~~d~ivftS~------ 237 (302)
.+.+.+++. |.+|+.+.+|+...+.... .++.+.+...|.|||.+|
T Consensus 25 ~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iVi~~P~yn~~~ 104 (208)
T PRK13556 25 AFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADKYLNQFLEADKVVFAFPLWNFTI 104 (208)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHCCEEEEeccccccCC
Confidence 445566654 7888888888654321111 112223457899999987
Q ss_pred -HHHHHHHHHhhhc
Q 022128 238 -SAVRSSWVNLISD 250 (302)
Q Consensus 238 -s~v~~~~~~~l~~ 250 (302)
..++ .|++.+-.
T Consensus 105 Pa~LK-~~iD~v~~ 117 (208)
T PRK13556 105 PAVLH-TYIDYLNR 117 (208)
T ss_pred cHHHH-HHHHHHhc
Confidence 5678 78876653
No 372
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=40.14 E-value=91 Score=28.99 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCCEEEEeCCCcchhh--HHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHH
Q 022128 176 KKKCTVLYPASAKASNE--IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSA 239 (302)
Q Consensus 176 ~~~~~vL~~rg~~~~~~--L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~ 239 (302)
.++.+|++...+..... +...-+..|++|..+++......+ .+++.+.+ .+.++|+|+-.+.
T Consensus 86 ~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~--~~~~~~~l~~~~~lv~~~~~~~ 150 (371)
T PF00266_consen 86 KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLD--LEDLEEALNPDTRLVSISHVEN 150 (371)
T ss_dssp TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCS--HHHHHHHHHTTESEEEEESBET
T ss_pred ccccccccccccccccccccccccccchhhhccccccccchhh--hhhhhhhhccccceEEeecccc
Confidence 35678988888877665 455555789888888775433222 23333333 6778888876654
No 373
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=40.10 E-value=11 Score=32.14 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=38.4
Q ss_pred hhHHHHHHhCC-CeeEEEeeeeeecCCCCcH------------------HH-HHHcCCCCEEEEEC-------cHHHHHH
Q 022128 191 NEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQ------------------TV-LKQALSIPVVAVAS-------PSAVRSS 243 (302)
Q Consensus 191 ~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~------------------~~-~~~~~~~d~ivftS-------~s~v~~~ 243 (302)
+.+.+.|++.| .+|+.+.+|+. ..+.... .. ++.+...|.|||.. |..++ .
T Consensus 22 ~~~~~~~~~~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~iV~~~Pl~~~~~Pa~lK-~ 99 (199)
T PF02525_consen 22 DAFLEGLQEAGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADHIVFAFPLYWFSMPAQLK-G 99 (199)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSEEEEEEEEBTTBC-HHHH-H
T ss_pred HHHHHHHHHcCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCcceEeccceecccChhHH-H
Confidence 57788999999 89999999997 2222110 01 23445789888876 57889 8
Q ss_pred HHHhh
Q 022128 244 WVNLI 248 (302)
Q Consensus 244 ~~~~l 248 (302)
|++.+
T Consensus 100 ~iD~v 104 (199)
T PF02525_consen 100 WIDRV 104 (199)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88876
No 374
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.08 E-value=1.7e+02 Score=26.83 Aligned_cols=147 Identities=18% Similarity=0.089 Sum_probs=77.6
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|-- .+ .+++.+... ..+++.-+-.|
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g-- 125 (287)
T PRK14173 51 DRQAKALGLRSQVEVLPEST---SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVG-- 125 (287)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhhH--
Confidence 44567779887765543222 2234444443 446689999988732 21 122222110 11222211111
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.| +. |-. .+.| -|+.+..+.|..+.. .|++++++ |+.....-|...|...|+.|+.+.-..
T Consensus 126 ---~l--~~-----~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--- 189 (287)
T PRK14173 126 ---RL--WM-----GGE-ALEP--CTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--- 189 (287)
T ss_pred ---HH--hc-----CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---
Confidence 11 11 322 2444 367777777765432 68888777 777777788999999999887544221
Q ss_pred CCCCcHHHHHHcCCCCEEEEECcH
Q 022128 215 VHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
....+. ..+.|+|+..-+.
T Consensus 190 --~~l~~~---~~~ADIvIsAvGk 208 (287)
T PRK14173 190 --QDLPAV---TRRADVLVVAVGR 208 (287)
T ss_pred --CCHHHH---HhhCCEEEEecCC
Confidence 111222 3466777665543
No 375
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=40.04 E-value=32 Score=33.25 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=40.9
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeee----CCCc-----hHHHHHHhcCCC---ccEEEEeChH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ----GPDT-----DRLSSVLNADTI---FDWIIITSPE 112 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~----~~~~-----~~l~~~l~~l~~---~d~IifTS~~ 112 (302)
-.|.+||+.|...++ ....|.-.|+.|++++..+-.. .-+. +.+.+.++.... +..+++|||+
T Consensus 104 ~~gd~VLv~RN~HkS--v~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT 178 (417)
T PF01276_consen 104 RPGDKVLVDRNCHKS--VYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT 178 (417)
T ss_dssp TTTCEEEEETT--HH--HHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-
T ss_pred CCCCEEEEcCCcHHH--HHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC
Confidence 468899999987655 4446777899999998864211 1122 567777765444 5569999997
No 376
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=40.02 E-value=2.8e+02 Score=24.89 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCe-EEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022128 50 NPK-VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (302)
Q Consensus 50 g~~-IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~ 124 (302)
|.. +.+++.. ...+.+.+++.|+++..+|-..- ...|.+++.+.+++. +.|+||+++.+.-..+.+.++..
T Consensus 31 g~~v~f~~~~~--~~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~~-~~d~vV~D~y~~~~~~~~~~k~~ 102 (279)
T TIGR03590 31 GAEVAFACKPL--PGDLIDLLLSAGFPVYELPDESS-RYDDALELINLLEEE-KFDILIVDHYGLDADWEKLIKEF 102 (279)
T ss_pred CCEEEEEeCCC--CHHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHHHhc-CCCEEEEcCCCCCHHHHHHHHHh
Confidence 444 4566664 34567889999999887764321 112444566666443 68999999987666677777654
No 377
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=39.88 E-value=1.9e+02 Score=24.80 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=31.0
Q ss_pred EEEEEC--cHHHHHHHHHhhhcccCCCceEE-EECHH----HHHHHHHcCCCeEEe
Q 022128 231 VVAVAS--PSAVRSSWVNLISDTEQWSNSVA-CIGET----TASAAKRLGLKNVYY 279 (302)
Q Consensus 231 ~ivftS--~s~v~~~~~~~l~~~~~~~~~i~-~IG~~----Ta~~l~~~G~~~~~v 279 (302)
+++|.| .+.++ .+.+.+.+... ...++ ++..+ ..+.+++.|+....+
T Consensus 4 i~vl~sg~gs~~~-~ll~~~~~~~~-~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~ 57 (200)
T PRK05647 4 IVVLASGNGSNLQ-AIIDACAAGQL-PAEIVAVISDRPDAYGLERAEAAGIPTFVL 57 (200)
T ss_pred EEEEEcCCChhHH-HHHHHHHcCCC-CcEEEEEEecCccchHHHHHHHcCCCEEEE
Confidence 678888 88888 88888765432 22222 33443 567788899987543
No 378
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=39.72 E-value=1.4e+02 Score=32.44 Aligned_cols=97 Identities=19% Similarity=0.198 Sum_probs=57.5
Q ss_pred ceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 129 ~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+-+-.||..|....+-. . |=.+++... .+.++ .+. .++++|++.|..|..-|.+.|++.|.+|+.+.
T Consensus 857 ~i~rvVGkgT~~Ls~l~--~---Gd~v~v~GP--LG~pF--~i~----~~k~vLLVgGGVGiApLak~Lk~~G~~V~~~~ 923 (1028)
T PRK06567 857 FIVFEVGKSTSLCKTLS--E---NEKVVLMGP--TGSPL--EIP----QNKKIVIVDFEVGNIGLLKVLKENNNEVIFVT 923 (1028)
T ss_pred EEEEEEChHHHHHhcCC--C---CCEEEEEcc--cCCCC--CCC----CCCeEEEEEccccHHHHHHHHHHCCCeEEEEE
Confidence 34568899885544322 1 433333321 12111 111 23689999999888889999999999998887
Q ss_pred eeeeecCCCCcHHHHHHcCCCCE-EEEECcHHHHHHHHHhh
Q 022128 209 TYTTEPVHHVDQTVLKQALSIPV-VAVASPSAVRSSWVNLI 248 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~-ivftS~s~v~~~~~~~l 248 (302)
|- +... ..+.++|. |+..|..-.+ .+....
T Consensus 924 -~~----d~~~----~~l~~vD~vi~iGs~~mm~-~~~~~~ 954 (1028)
T PRK06567 924 -YP----DIKI----RKLVSVDIVIINASPEIIE-ELQSLK 954 (1028)
T ss_pred -cC----CCCc----ccchhccEEEEeCCHHHHH-HHHHHH
Confidence 73 1111 22457785 5556666666 555544
No 379
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=39.42 E-value=1.3e+02 Score=27.29 Aligned_cols=89 Identities=13% Similarity=0.090 Sum_probs=49.8
Q ss_pred ccHHHHHHhcccCCCCCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE
Q 022128 162 ATGKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV 234 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf 234 (302)
..+..+++.+.... -+++.++..+. ..+.+.+.+++.|++|.....|.......+....+..+ .+.|+|++
T Consensus 146 ~~~~a~~~~~~~~~--~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~ 223 (348)
T cd06350 146 SQALAIVALLKHFG--WTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVV 223 (348)
T ss_pred HHHHHHHHHHHHCC--CeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEE
Confidence 34566666655432 35666665333 34678889999998876555544321111112223333 35576555
Q ss_pred -ECcHHHHHHHHHhhhcccC
Q 022128 235 -ASPSAVRSSWVNLISDTEQ 253 (302)
Q Consensus 235 -tS~s~v~~~~~~~l~~~~~ 253 (302)
.++..+. .++..+.+...
T Consensus 224 ~~~~~~~~-~~~~~a~~~g~ 242 (348)
T cd06350 224 FGDEDDAL-RLFCEAYKLGM 242 (348)
T ss_pred EeCcHHHH-HHHHHHHHhCC
Confidence 4666777 77777776543
No 380
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=39.30 E-value=77 Score=27.54 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC--CceEEEEChh
Q 022128 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP--NVRIGVVGAG 137 (302)
Q Consensus 92 ~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~--~~~i~aVG~~ 137 (302)
.+.+.+....+.++|+..+-..+..+++.+.+.|+. ++.+++.+..
T Consensus 173 ~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~~ 220 (272)
T cd06301 173 LMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDGT 220 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCCC
Confidence 344555444567888888877777788888887764 5566666543
No 381
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=39.17 E-value=3.1e+02 Score=25.19 Aligned_cols=210 Identities=8% Similarity=0.029 Sum_probs=109.9
Q ss_pred CCCCCCeEEEeCCCC--ChHHHH------HHHHhCCCcE--EEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 46 ASNSNPKVVVTRERG--KNGKLI------KALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l~------~~L~~~G~~v--~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
.+++|+.|++..+.. .++.+. ..+++.|+.- ..+|.+-.-. .| ... .. -.+-+++
T Consensus 34 ~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsR-QD-----r~~---~~------~e~isak 98 (302)
T PLN02369 34 ESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYAR-AD-----RKT---QG------RESIAAK 98 (302)
T ss_pred CCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeecccccc-cc-----ccc---CC------CCCchHH
Confidence 467888888887632 244444 4566888863 4445544321 11 111 11 0233456
Q ss_pred HHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHH
Q 022128 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (302)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~ 195 (302)
.+.+.+...|. -+++++-..+.+ ++.+| .++++.. .....+++.|.+....+.+++++....+.-.+.+
T Consensus 99 ~va~lL~~~g~--d~vi~vDlHs~~-i~~~F-----~ip~~~l---~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~ 167 (302)
T PLN02369 99 LVANLITEAGA--DRVLACDLHSGQ-SMGYF-----DIPVDHV---YGQPVILDYLASKTISSPDLVVVSPDVGGVARAR 167 (302)
T ss_pred HHHHHHHhcCC--CEEEEEECCchH-Hhhcc-----CCceecc---cchHHHHHHHHHhCCCCCceEEEEECcChHHHHH
Confidence 66666666554 367777777644 44553 4333211 2234455556443222245777777777766666
Q ss_pred HHHh-C-CCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEE----EECcHHHHHHHHHhhhcccCCCceEEE----ECHHH
Q 022128 196 GLSN-R-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSSWVNLISDTEQWSNSVAC----IGETT 265 (302)
Q Consensus 196 ~L~~-~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~iv----ftS~s~v~~~~~~~l~~~~~~~~~i~~----IG~~T 265 (302)
.+.+ . |+.+..+.-|+................+-++|+ .+++.++. ...+.+++.+...+.++| ..+..
T Consensus 168 ~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~-~a~~~l~~~Ga~~v~~~~tH~v~~~~a 246 (302)
T PLN02369 168 AFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTIT-KGAALLHQEGAREVYACATHAVFSPPA 246 (302)
T ss_pred HHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHH-HHHHHHHhCCCCEEEEEEEeeeeCHHH
Confidence 6653 2 456655666553221110000000122223443 57888888 787888765433444444 34555
Q ss_pred HHHHHHcCCCeEEecCC
Q 022128 266 ASAAKRLGLKNVYYPTH 282 (302)
Q Consensus 266 a~~l~~~G~~~~~v~~~ 282 (302)
.+.+++.++..+++.+.
T Consensus 247 ~~~l~~~~~~~iv~t~t 263 (302)
T PLN02369 247 IERLSSGLFQEVIVTNT 263 (302)
T ss_pred HHHHHhCCCCEEEEeCC
Confidence 66677778887666554
No 382
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.14 E-value=1.7e+02 Score=26.91 Aligned_cols=147 Identities=13% Similarity=0.041 Sum_probs=79.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--H--HHHHHHHHHc-CCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAWKEA-GTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v--~~f~~~l~~~-~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+.. ..+++.+.+. .....|+|++--|-- . +.+++.+... ..+++.-+-.|
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g- 128 (297)
T PRK14186 53 KEKACARVGIASFGKHLPADT---SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLG- 128 (297)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHH-
Confidence 344567779888755443221 2233444443 446689999988832 2 1122222110 11222222222
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.|. . |-. .+.| -|+.+.++.|..+. ..|++++++ |+.....-|...|..+|+.|+.+.-..
T Consensus 129 ----~l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T-- 192 (297)
T PRK14186 129 ----RLV-K------GEP-GLRS--CTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT-- 192 (297)
T ss_pred ----HHh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--
Confidence 111 1 211 2444 46888877776553 268888777 777777888999999999886653321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECc
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
....+. ..+.|+|+-.-+
T Consensus 193 ---~~l~~~---~~~ADIvIsAvG 210 (297)
T PRK14186 193 ---QDLASI---TREADILVAAAG 210 (297)
T ss_pred ---CCHHHH---HhhCCEEEEccC
Confidence 111222 246677766554
No 383
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=39.12 E-value=2.4e+02 Score=27.30 Aligned_cols=137 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEE--eChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIII--TSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~Iif--TS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..++.+.|++.|++++..|... .+.+...+..+.+ .+.|.||+ .+-.--..+...++.. ++++...+..
T Consensus 25 ~~~~~~~l~~~~~~vv~~~~~~----~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~~~---~~Pvll~a~~ 97 (452)
T cd00578 25 AREVADLLNELPVEVVDKPEVT----GTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLSEL---RKPVLLLATQ 97 (452)
T ss_pred HHHHHHHHhcCCceEEecCccc----CCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHHHhc---CCCEEEEeCC
Q ss_pred --------------------hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--------CCCEEEEeCCCcc
Q 022128 138 --------------------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--------KKCTVLYPASAKA 189 (302)
Q Consensus 138 --------------------Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--------~~~~vL~~rg~~~ 189 (302)
++..|++. |++..++-.....+...+.|.++.. ++.||..+.+.-.
T Consensus 98 ~~~~~~~~~~~~~s~~g~~~~~~~l~r~------gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~ 171 (452)
T cd00578 98 FNREIPDFMNLNQSACGLREFGNILARL------GIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMR 171 (452)
T ss_pred CCCCCCchhhhhcchhhhHHHHHHHHHc------CCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcC
Q ss_pred hh-----hHHHHHHhCCCeeEEEeeee
Q 022128 190 SN-----EIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 190 ~~-----~L~~~L~~~G~~v~~~~vY~ 211 (302)
.- +..+.++.-|.+|..+.+.+
T Consensus 172 ~~~~~~~d~~~~~~~fG~~v~~i~~~e 198 (452)
T cd00578 172 GMAVTEGDKVLAQIKFGVSVEYLEVGE 198 (452)
T ss_pred CcEEecCCHHHHHHhhCeEEEEEcHHH
No 384
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.10 E-value=1.9e+02 Score=24.88 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCC--CchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~--~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
.+.+.++++|.++.....+...... ....+.+.++...+.|+|+.+|-.....+.+.+.+.++ .++.+++.+..
T Consensus 137 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~~ 215 (269)
T cd06288 137 GYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDNQ 215 (269)
T ss_pred HHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCCc
Confidence 3455667777653321111111100 12334455544446788988888777777788887775 35566666543
No 385
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=39.06 E-value=2e+02 Score=24.85 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=39.2
Q ss_pred HHHHHHHHhCC-CcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHR-IDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.-+.+.++++| .++.. .. ....+. +.+.+.+..-.+.++|+..+-. +..+.+++.+.|+....++..|..
T Consensus 145 ~g~~~a~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g~~~al~~~g~~~p~v~g~d~~ 219 (272)
T cd06300 145 AGAKEVLKEYPGIKIVG--EV--YGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AVGAVQAFEQAGRDIPPVTGEDEN 219 (272)
T ss_pred HHHHHHHHHCCCcEEEe--ec--CCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cHHHHHHHHHcCCCCcEEEeeCCc
Confidence 33566777776 65432 11 111121 2334444333457888888777 667788888888744444555443
No 386
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=38.87 E-value=1.2e+02 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS 110 (302)
|.|-+|.-|.. .++.|+++ |+.+..+ --.+......+...+ .-+++|.||+|.
T Consensus 30 l~Gf~l~AT~g------Ta~~L~~~~Gi~v~~v---i~~~~gg~~~i~~~I-~~g~i~lVInt~ 83 (142)
T PRK05234 30 LEQHELYATGT------TGGLIQEATGLDVTRL---LSGPLGGDQQIGALI-AEGKIDMLIFFR 83 (142)
T ss_pred hcCCEEEEeCh------HHHHHHhccCCeeEEE---EcCCCCCchhHHHHH-HcCceeEEEEec
No 387
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=38.72 E-value=2.2e+02 Score=27.56 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=23.9
Q ss_pred HHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 165 e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
+.|...+.... +++-+++......-+.+.+.|.+.|..+
T Consensus 231 ~~l~~ll~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v 269 (460)
T PRK11776 231 PALQRLLLHHQ-PESCVVFCNTKKECQEVADALNAQGFSA 269 (460)
T ss_pred HHHHHHHHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcE
Confidence 34444443322 3344566666677788889998888765
No 388
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.65 E-value=1.8e+02 Score=26.78 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=75.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v--~~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+. ...+++.+.+. .....|+|++--|-- . +..++.+.. ...+++.-+-.|
T Consensus 54 k~k~~~~~Gi~~~~~~l~~~---~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g- 129 (297)
T PRK14168 54 KIKTAHRLGFHEIQDNQSVD---ITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVG- 129 (297)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHH-
Confidence 34556777988764433221 12234444443 446689999987732 1 111221111 011222222222
Q ss_pred hhHHHHHHHhhccCCCC-ceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhC----CCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~-~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~----G~~v~~~~ 208 (302)
.|- . |- ...+.| -|+.+.++.|..+. ..|++++++ |+.....-|...|.+. |+.|+.+.
T Consensus 130 ----~l~-~------~~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 130 ----RLM-I------GGDEVKFLP--CTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred ----HHh-c------CCCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 111 1 21 122444 36777777776543 268888777 7777777788899887 67776543
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 209 TYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
-.. ....+. ..+.|+|+-..
T Consensus 197 s~T-----~~l~~~---~~~ADIvVsAv 216 (297)
T PRK14168 197 TRS-----KNLARH---CQRADILIVAA 216 (297)
T ss_pred CCC-----cCHHHH---HhhCCEEEEec
Confidence 221 111222 34668777654
No 389
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=38.61 E-value=2.5e+02 Score=26.19 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=74.2
Q ss_pred CCccEEEEeCh-HHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCce-ec-c-CC-CccHHHHHHhcccCC
Q 022128 101 TIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV-AF-S-PS-KATGKILASELPKNG 175 (302)
Q Consensus 101 ~~~d~IifTS~-~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~-~~-~-p~-~~~~e~L~~~L~~~~ 175 (302)
.+.+.||=... .........+.+ .++.++..+..+.. +... |... .+ + |. ...+..+++.+.+..
T Consensus 77 ~~V~~vvG~~~S~~~~a~~~v~~~---~~i~~i~p~st~~~-~~~~------~~~~~vfr~~~~~~~q~~~~~~~l~~~~ 146 (366)
T COG0683 77 DGVDAVVGPTTSGVALAASPVAEE---AGVPLISPSATAPQ-LTGR------GLKPNVFRTGPTDNQQAAAAADYLVKKG 146 (366)
T ss_pred cCceEEEEeccCcccccchhhHhh---cCceEEeecCCCCc-cccc------ccccceEEecCChHHHHHHHHHHHHHhc
Confidence 55666664332 222223333433 24556666554444 4444 4432 12 2 22 234555777776654
Q ss_pred CCCCEEEEeCCC-----cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhh
Q 022128 176 KKKCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 176 ~~~~~vL~~rg~-----~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~ 249 (302)
.+ +++.++..+ ...+.+.+.|++.|.++.....|.....+ ....+.+.. .++|+|++++...--..|++.+.
T Consensus 147 ~~-k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~ 224 (366)
T COG0683 147 GK-KRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYAPGDTD-FSALVAKIKAAGPDAVLVGGYGPDAALFLRQAR 224 (366)
T ss_pred CC-cEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeCCCCCC-hHHHHHHHHhcCCCEEEECCCCccchHHHHHHH
Confidence 33 577777654 34678999999999984444566555443 222222222 57887777654332215667666
Q ss_pred ccc
Q 022128 250 DTE 252 (302)
Q Consensus 250 ~~~ 252 (302)
+..
T Consensus 225 ~~G 227 (366)
T COG0683 225 EQG 227 (366)
T ss_pred HcC
Confidence 643
No 390
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.50 E-value=1.2e+02 Score=22.85 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=24.4
Q ss_pred CCceeccCCCcc-HHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCe
Q 022128 152 SLDVAFSPSKAT-GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (302)
Q Consensus 152 G~~~~~~p~~~~-~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~ 203 (302)
|+.+.. -.-.+ +..+++.|.+. ..++++.++.++ .+.+.|++.|++
T Consensus 55 Gi~~~~-~~i~ts~~~~~~~l~~~-~~~~~v~vlG~~----~l~~~l~~~G~e 101 (101)
T PF13344_consen 55 GIPVDE-DEIITSGMAAAEYLKEH-KGGKKVYVLGSD----GLREELREAGFE 101 (101)
T ss_dssp TTT--G-GGEEEHHHHHHHHHHHH-TTSSEEEEES-H----HHHHHHHHTTEE
T ss_pred CcCCCc-CEEEChHHHHHHHHHhc-CCCCEEEEEcCH----HHHHHHHHcCCC
Confidence 776532 11233 34444555553 246788887665 467778888753
No 391
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=38.45 E-value=52 Score=29.37 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=28.7
Q ss_pred CccEEEEeChHHHHHH----HHHHHHcCCCCceEEEEChhh----HHHHHHHhhccCCCCceeccC
Q 022128 102 IFDWIIITSPEAGSVF----LEAWKEAGTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSP 159 (302)
Q Consensus 102 ~~d~IifTS~~av~~f----~~~l~~~~~~~~~i~aVG~~T----a~~l~~~~~~~~~G~~~~~~p 159 (302)
+.|.+||.|||++.-- -+.|.. .+++.++||... .+.+++. |+--.+++
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~kd~l~~~------g~GYIivk 115 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKKAKDALEEE------GFGYIIVK 115 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGGGHHHHHHT------T-EEEEET
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchhhHHHHHhc------CCcEEEEe
Confidence 5799999999997653 333333 467888887665 6677776 77555554
No 392
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=38.43 E-value=1.2e+02 Score=25.32 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=39.4
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
..+.|++|+|.-..+- ...+++.|.+.|+++..+- ...+++.+. +.++|.||-+++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~-------r~~~~l~~~---l~~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH-------SKTKNLKEH---TKQADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE-------CCchhHHHH---HhhCCEEEEcCCCC
Confidence 5788999999988654 4558999999998754322 112344443 46788888766654
No 393
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=38.40 E-value=2e+02 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.039 Sum_probs=15.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+|++.........+...++..|+++..+++
T Consensus 73 ~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 105 (356)
T cd06451 73 PGDKVLVGVNGVFGDRWADMAERYGADVDVVEK 105 (356)
T ss_pred CCCEEEEecCCchhHHHHHHHHHhCCCeEEeec
Confidence 445565554322222233445555666555554
No 394
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=38.32 E-value=3.6e+02 Score=27.62 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=29.7
Q ss_pred ccHHHHHHhcccCCCCCCEEEEeCCCcc-hhhHHHHHHhC-CC
Q 022128 162 ATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNR-GF 202 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~~~L~~~-G~ 202 (302)
.+-.+|.+.+.....+.++|++..|+.. ...|.+.|.+. |+
T Consensus 574 aD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~ 616 (630)
T TIGR03675 574 SDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNI 616 (630)
T ss_pred CCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCC
Confidence 4667787777765445578999999865 57888888754 53
No 395
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.27 E-value=2.4e+02 Score=24.42 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=24.6
Q ss_pred CeEEEeCCCC--ChHHHHHHHHhCCCcEEEeceE
Q 022128 51 PKVVVTRERG--KNGKLIKALAKHRIDCLELPLI 82 (302)
Q Consensus 51 ~~IlitR~~~--~~~~l~~~L~~~G~~v~~~P~~ 82 (302)
+-|.|.|..+ +..+..+.|.+.|+.++++++-
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~ 38 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEITLR 38 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 4466777654 4557889999999999998874
No 396
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=38.10 E-value=1.7e+02 Score=25.15 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=33.2
Q ss_pred CeEEEeC-CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 51 PKVVVTR-ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 51 ~~IlitR-~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
|+|.|.. ..+.-..+.+.|++.|+++ ++..+. +.+ ++.++|.||++-..+..
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~---~v~~~~---~~~-------~l~~~d~lIlpG~~~~~ 54 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGA---DVVVTA---DPD-------AVAAADRVVLPGVGAFA 54 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCc---cEEEEC---CHH-------HhcCCCEEEECCCCcHH
Confidence 4555554 4556678999999999965 222222 212 34789999999865433
No 397
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.10 E-value=66 Score=30.50 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcH---HHHHHc--CCCCEE
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVV 232 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~~--~~~d~i 232 (302)
.+.|.+.+.++ ++|++++.+... .+.+.+.|++.|+++. +|.....+...+ +..+.+ .++|+|
T Consensus 17 ~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~D~I 90 (382)
T cd08187 17 ESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV---ELGGVEPNPRLETVREGIELCKEEKVDFI 90 (382)
T ss_pred HHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE---EECCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34454555443 478988877532 3578889999987653 454333222222 222222 578887
Q ss_pred E-EECcHHHH
Q 022128 233 A-VASPSAVR 241 (302)
Q Consensus 233 v-ftS~s~v~ 241 (302)
+ +-..+..+
T Consensus 91 IaiGGGS~iD 100 (382)
T cd08187 91 LAVGGGSVID 100 (382)
T ss_pred EEeCChHHHH
Confidence 7 66666665
No 398
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=37.91 E-value=1e+02 Score=27.49 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=22.9
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.+.++|+.++-..+..+.+++.+.|+.++.++..+..
T Consensus 206 ~~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~~ 242 (295)
T PRK10653 206 PDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 (295)
T ss_pred CCcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCCC
Confidence 3466777766666666666666666655555555543
No 399
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=37.85 E-value=2.1e+02 Score=22.76 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=43.7
Q ss_pred CCCCC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC---------------CccEEEEeC
Q 022128 47 SNSNP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---------------IFDWIIITS 110 (302)
Q Consensus 47 ~l~g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~---------------~~d~IifTS 110 (302)
+-+|- |.++.|| ++-...|++.|+.|-.-.++-++.......|...++-++ +-.+++|.+
T Consensus 40 ~dFGIiRmvV~~~----d~A~~~Lee~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r 115 (142)
T COG4747 40 GDFGIIRMVVDRP----DEAHSVLEEAGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVR 115 (142)
T ss_pred cCcceEEEEcCCh----HHHHHHHHHCCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEE
Confidence 44443 5556555 556788999999999888888775322233333332222 123456666
Q ss_pred hHHHHHHHHHHHHcC
Q 022128 111 PEAGSVFLEAWKEAG 125 (302)
Q Consensus 111 ~~av~~f~~~l~~~~ 125 (302)
.+-++.....|++.|
T Consensus 116 ~ed~d~~~~aLed~g 130 (142)
T COG4747 116 VEDIDRAIKALEDAG 130 (142)
T ss_pred hhHHHHHHHHHHHcC
Confidence 666666665555543
No 400
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=37.82 E-value=51 Score=30.41 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEe--CCCCChHHHHHHHHhCCCcEEEec
Q 022128 52 KVVVT--RERGKNGKLIKALAKHRIDCLELP 80 (302)
Q Consensus 52 ~Ilit--R~~~~~~~l~~~L~~~G~~v~~~P 80 (302)
+|++| ||..+...+++.|++.|++++.++
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~ 177 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVIV 177 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEEe
Confidence 67777 566667778888888887766543
No 401
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.72 E-value=2.5e+02 Score=24.78 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 92 ~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+...|..-.+.++|+.++-..+....+.+.+.++.++.++..|..+.
T Consensus 176 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~~~ 223 (294)
T cd06316 176 IANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLGLN 223 (294)
T ss_pred HHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCCcH
Confidence 344555433567888888777777788888888877788888876654
No 402
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=37.70 E-value=3e+02 Score=27.37 Aligned_cols=165 Identities=13% Similarity=0.115 Sum_probs=85.4
Q ss_pred eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCCce
Q 022128 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPNVR 130 (302)
Q Consensus 52 ~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~~~~~~~~ 130 (302)
+|+++.+- .+...+.|++.++++...+ ..+.+++.+ .+.++|.++..+..-+. .+++ . .+++|
T Consensus 1 ~vli~~~~--~~~~~~~l~~~~~~~~~~~------~~~~~~~~~---~~~~~d~li~~~~~~~~~~~l~---~--~~~Lk 64 (525)
T TIGR01327 1 KVLIADPI--SPDGIDILEDVGVEVDVQT------GLSREELLE---IIPDYDALIVRSATKVTEEVIA---A--APKLK 64 (525)
T ss_pred CEEEeCCC--CHHHHHHHHhcCcEEEeCC------CCCHHHHHH---HhcCCCEEEEcCCCCcCHHHHh---h--CCCce
Confidence 37787764 3455677777776665322 112233433 45789988775542222 1222 2 24566
Q ss_pred EE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cc-------------cC--------CCC
Q 022128 131 IG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-------------KN--------GKK 177 (302)
Q Consensus 131 i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~-------------~~--------~~~ 177 (302)
++ ..|.++ .+++.+. |+.+.-.|. .++...++. +. .| ...
T Consensus 65 ~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 137 (525)
T TIGR01327 65 VIGRAGVGVDNIDIEAATAR------GILVVNAPT-GNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELY 137 (525)
T ss_pred EEEECCcccchhcHHHHHHC------CCEEEeCCC-cChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccC
Confidence 54 333333 2455666 988866654 222222211 00 01 115
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecC----CCC-cHHHHHHcCCCCEEEEECcHH
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV----HHV-DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~----~~~-~~~~~~~~~~~d~ivftS~s~ 239 (302)
|+++.++.-..-...+...|+..|.+|..+.-|..... ... ...+.+.+...|+|++.-|.+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt 204 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLT 204 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCC
Confidence 67888887666666789999999987654433311100 000 001122235778888877754
No 403
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.64 E-value=1.2e+02 Score=26.20 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 92 ~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
.+.+.++...+.|+|+.++......+...+.+.++ .++.+++.+..
T Consensus 173 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~~ 221 (270)
T cd06294 173 ALKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNS 221 (270)
T ss_pred HHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCCh
Confidence 34444533345788888887666677777777775 35666666654
No 404
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=37.60 E-value=2.5e+02 Score=23.67 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=47.2
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCC-C-chHHHHHHhcCCCccEEEEeChHHHHHHHHH
Q 022128 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGP-D-TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (302)
Q Consensus 50 g~~IlitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~-~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~ 120 (302)
.++|++..+... ...+.+.+++.|.++...-.+...... + ...+.+.+..-.+.|+|+.++......+.++
T Consensus 116 ~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~a 195 (264)
T cd06267 116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAANDLMAIGALRA 195 (264)
T ss_pred CceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHH
Confidence 456776643321 234556777777533221111111101 1 1234455544445899988877666677788
Q ss_pred HHHcCCC---CceEEEEChh
Q 022128 121 WKEAGTP---NVRIGVVGAG 137 (302)
Q Consensus 121 l~~~~~~---~~~i~aVG~~ 137 (302)
+.+.++. ++.+++.+..
T Consensus 196 l~~~g~~~~~~i~i~~~d~~ 215 (264)
T cd06267 196 LRELGLRVPEDVSVVGFDDI 215 (264)
T ss_pred HHHhCCCCCCceEEEeeCCC
Confidence 8887753 5666666543
No 405
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=37.52 E-value=90 Score=29.37 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=40.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
.|.+|+++.|.- ..+....+..|+++..+|+-. ....|.+.+.+.+ ...+.+.|++++|+-
T Consensus 126 ~gd~Vlv~~P~y--~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~-~~~~~~~v~l~~P~N 186 (380)
T PLN03026 126 PGDKIIDCPPTF--GMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAV-ETHKPKLLFLTSPNN 186 (380)
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHH-hccCCcEEEEeCCCC
Confidence 477899988853 456666777899999988721 1112445565555 234678899998874
No 406
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.50 E-value=1.3e+02 Score=26.12 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=43.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~-~~~i~aVG~~ 137 (302)
.-+.+.|+++|.++.. .... ..+. +.+.+.|..-.+.++|+..+-.......+++++.++. ++.++. |..
T Consensus 146 ~gf~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~~~~ivg-~d~ 220 (274)
T cd06311 146 DAFDAAIAKYPIKILD--RQYA--NWNRDDAFSVMQDLLTKFPKIDAVWAHDDDMAVGVLAAIKQAGRTDIKFVVG-GAG 220 (274)
T ss_pred HHHHHHHhhCCcEEEe--ccCC--CCcHHHHHHHHHHHHHhCCCcCEEEECCCcHHHHHHHHHHHcCCCCCceEEE-eCC
Confidence 3455667777754432 1111 1121 2344555444568899888877777788888888765 344443 355
Q ss_pred hHHHHHH
Q 022128 138 TASIFEE 144 (302)
Q Consensus 138 Ta~~l~~ 144 (302)
+...++.
T Consensus 221 ~~~~~~~ 227 (274)
T cd06311 221 SKDMIKM 227 (274)
T ss_pred CHHHHHH
Confidence 6666554
No 407
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=37.41 E-value=4.3e+02 Score=26.35 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=84.5
Q ss_pred CeEEEeCCCCChHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022128 51 PKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~~~~~~ 128 (302)
|+|+++.+- .+...+.|++. |+++...+ ..+.+++.+ .+.++|.++..+...+. .+++ . .++
T Consensus 1 m~ili~~~~--~~~~~~~l~~~~~~~v~~~~------~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~---~--~~~ 64 (526)
T PRK13581 1 MKVLVSDPI--SPAGLEILKDAPGVEVDVKT------GLDKEELLE---IIGDYDALIVRSATKVTAEVLE---A--AKN 64 (526)
T ss_pred CeEEEeCCC--CHHHHHHHhccCCeEEEeCC------CCCHHHHHH---HhcCCCEEEEcCCCCCCHHHHh---h--CCC
Confidence 468888764 34455677765 55554322 112233333 45788988765432222 1222 2 245
Q ss_pred ceEE-EEChhhH----HHHHHHhhccCCCCceeccCCCccHHHHHH-------hcc-------------cCC--------
Q 022128 129 VRIG-VVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILAS-------ELP-------------KNG-------- 175 (302)
Q Consensus 129 ~~i~-aVG~~Ta----~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~-------~L~-------------~~~-------- 175 (302)
+|++ ..|.++- +++.+. |+.+.-.|.. ++...++ .+. .|.
T Consensus 65 Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~p~~-~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~ 137 (526)
T PRK13581 65 LKVIGRAGVGVDNVDVPAATRR------GIIVVNAPTG-NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE 137 (526)
T ss_pred CeEEEECCcccccccHHHHHHC------CCEEEeCCCC-ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc
Confidence 6654 3333332 445566 8887666542 2222221 000 010
Q ss_pred CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecC----CCCcHHHHHHcCCCCEEEEECcHH
Q 022128 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV----HHVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 176 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~----~~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
..|+++.++.-..-...+...|+..|.+|..+.-|..... ......+.+.+...|+|++.-|.+
T Consensus 138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t 205 (526)
T PRK13581 138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLT 205 (526)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCC
Confidence 1477888887666666789999999987654433321100 000001112235778888877764
No 408
>PLN02522 ATP citrate (pro-S)-lyase
Probab=37.31 E-value=4.7e+02 Score=26.75 Aligned_cols=204 Identities=16% Similarity=0.087 Sum_probs=106.9
Q ss_pred CCCcEEEeceEEeeeCCCchHHHHHHhcCCCc-cEEEEeCh-HHHHHHHHHHHHcCCCCceEEEECh------hhHHHHH
Q 022128 72 HRIDCLELPLIQHAQGPDTDRLSSVLNADTIF-DWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGA------GTASIFE 143 (302)
Q Consensus 72 ~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~-d~IifTS~-~av~~f~~~l~~~~~~~~~i~aVG~------~Ta~~l~ 143 (302)
.|-++..+|+|.++. ++.+.-.+. -.|||.++ .+.+..++.+...+.+.+-+++=|= .-.+.++
T Consensus 56 ~g~~~~~iPVf~tv~--------eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar 127 (608)
T PLN02522 56 FGQEEIAIPVHGSIE--------AACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYAR 127 (608)
T ss_pred cCCEeeCccccchHH--------HHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHH
Confidence 588888899988763 233233233 35667766 4557777777765544333333231 1223333
Q ss_pred HHhhccCCCCceeccCCCc---cHHH---------HHHhcccCCCCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeee
Q 022128 144 EVIQSSKCSLDVAFSPSKA---TGKI---------LASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~---~~e~---------L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (302)
+. |... +.|... +... +...+.....+.++|-++ ++..-...+.+.+...|.-+..+.-.
T Consensus 128 ~~------g~rl-IGPNc~Gii~p~~~kig~~~~~~~~~~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~Vsi 200 (608)
T PLN02522 128 AN------NKVV-IGPATVGGIQAGAFKIGDTAGTLDNIIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAI 200 (608)
T ss_pred Hc------CCEE-ECCCCCeeEccCcccccccccccccccCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 44 7764 344310 1100 000111111123456555 44444567788899999877777666
Q ss_pred eeecCCC-CcHHHHHHc---CCCCEEEEE---CcHHHHHHHHHhhhcccCCCceEE--EECHH-----------------
Q 022128 211 TTEPVHH-VDQTVLKQA---LSIPVVAVA---SPSAVRSSWVNLISDTEQWSNSVA--CIGET----------------- 264 (302)
Q Consensus 211 ~~~~~~~-~~~~~~~~~---~~~d~ivft---S~s~v~~~~~~~l~~~~~~~~~i~--~IG~~----------------- 264 (302)
=..+... +..+.++.+ .+-.+|++. +...-+ .|++.+++.. .+++|+ ..|.+
T Consensus 201 Gnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~-~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAia 278 (608)
T PLN02522 201 GGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEY-SLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKS 278 (608)
T ss_pred CCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHH-HHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccc
Confidence 6655422 223444433 345567766 556666 6777666532 122333 22332
Q ss_pred ---------HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 265 ---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 265 ---------Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
--++++++|+.++ .+.++|.+.+++.+.
T Consensus 279 g~~~~ta~~k~aAlr~aGv~vv-----~s~~El~~~~~~~~~ 315 (608)
T PLN02522 279 GGDMESAQAKNKALKDAGAIVP-----TSFEALEAAIKETFE 315 (608)
T ss_pred cCCCccHHHHHHHHHHCCCeEe-----CCHHHHHHHHHHHHH
Confidence 2345777887542 467778887777664
No 409
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=37.15 E-value=94 Score=28.56 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
.|.+|+++.+..-...+...++..|+++..+|+-.. ...|.+.+.+.+.. .+.+.|+++++
T Consensus 73 ~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~l~~~i~~-~~~~~v~i~~~ 133 (356)
T cd06451 73 PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPWG-EAVSPEEIAEALEQ-HDIKAVTLTHN 133 (356)
T ss_pred CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCCC-CCCCHHHHHHHHhc-cCCCEEEEecc
Confidence 588999998654443466778889999999986321 12245667766632 35678888776
No 410
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=37.15 E-value=66 Score=30.25 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEE-EE
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VA 235 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~iv-ft 235 (302)
.+.|.+.+.++ ..++++++.+.... +.+.+.|++.|+++..+.-.+..+......+..+.+ .++|.|+ +-
T Consensus 11 l~~l~~~l~~~--~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiG 88 (370)
T cd08551 11 IEKLGEEIKNL--GGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVG 88 (370)
T ss_pred HHHHHHHHHHc--CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 44555555543 23688888876543 478889998887764332222222211112222222 4788777 55
Q ss_pred CcHHHH
Q 022128 236 SPSAVR 241 (302)
Q Consensus 236 S~s~v~ 241 (302)
..+..+
T Consensus 89 GGs~~D 94 (370)
T cd08551 89 GGSVLD 94 (370)
T ss_pred CchHHH
Confidence 555555
No 411
>PRK12742 oxidoreductase; Provisional
Probab=36.99 E-value=2.1e+02 Score=24.26 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.0
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEE
Q 022128 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (302)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (302)
++.|++||||-... =...+++.|.+.|++++.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 46789999998643 356788899999998763
No 412
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=36.96 E-value=44 Score=29.04 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=28.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
+..+.+.+++.|+.++.+|... +.+.++..+ +..|.|+||-..
T Consensus 26 ~~~Yv~~i~~aG~~pv~ip~~~-----~~~~~~~~l---~~idGlll~GG~ 68 (217)
T PF07722_consen 26 AASYVKAIEAAGGRPVPIPYDA-----DDEELDELL---DRIDGLLLPGGG 68 (217)
T ss_dssp EHHHHHHHHHTT-EEEEE-SS-------HHHHHHHH---HCSSEEEE---S
T ss_pred hHHHHHHHHHcCCEEEEEccCC-----CHHHHHHHH---hhcCEEEEcCCc
Confidence 4678999999999999998876 234566655 468999999998
No 413
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=36.83 E-value=54 Score=27.85 Aligned_cols=71 Identities=13% Similarity=0.225 Sum_probs=43.6
Q ss_pred HHHHHHhC-CCcEEEeceEEeeeCCCc-----h----HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022128 65 LIKALAKH-RIDCLELPLIQHAQGPDT-----D----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 65 l~~~L~~~-G~~v~~~P~~~~~~~~~~-----~----~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aV 134 (302)
....|... |..+.---++|+-.+... . .+...+ ...+++|++||....++..+..+ ++....+
T Consensus 70 iE~~l~~~~g~~v~R~~IvEvGnLAs~~~g~~~~l~~~l~~~L-~~~g~~w~vfTaT~~lr~~~~rl------gl~~~~L 142 (179)
T PF12261_consen 70 IEQLLSRRFGRPVSRSQIVEVGNLASFSPGAARLLFAALAQLL-AQQGFEWVVFTATRQLRNLFRRL------GLPPTVL 142 (179)
T ss_pred HHHHHHhhcCCCcchhheeEeechhhcCcccHHHHHHHHHHHH-HHCCCCEEEEeCCHHHHHHHHHc------CCCceec
Confidence 44444443 555555556665543211 1 122333 33689999999999999988754 4566777
Q ss_pred ChhhHHHH
Q 022128 135 GAGTASIF 142 (302)
Q Consensus 135 G~~Ta~~l 142 (302)
|++..+.|
T Consensus 143 a~Ad~~rl 150 (179)
T PF12261_consen 143 ADADPSRL 150 (179)
T ss_pred cccCHhHc
Confidence 77777776
No 414
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=36.40 E-value=2.1e+02 Score=24.46 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEC
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG 135 (302)
..+.+.|+++|..+......... .+. +.+.+.++.-.+.++|+..+-.....+.+.+.+.+. .++.+++.+
T Consensus 136 ~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d 213 (268)
T cd01575 136 EGFRAALRAAGLDPPLVVTTPEP--SSFALGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFG 213 (268)
T ss_pred HHHHHHHHHcCCCCCceeEeccC--CCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecC
Confidence 34566777777643222111111 111 234444533346788888887777778888887764 356667666
Q ss_pred hhh
Q 022128 136 AGT 138 (302)
Q Consensus 136 ~~T 138 (302)
...
T Consensus 214 ~~~ 216 (268)
T cd01575 214 DLE 216 (268)
T ss_pred Cch
Confidence 543
No 415
>PRK10307 putative glycosyl transferase; Provisional
Probab=36.37 E-value=3.7e+02 Score=25.20 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=86.7
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhh------------HHHHHHHhhccCCCCceeccCC---CccH
Q 022128 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT------------ASIFEEVIQSSKCSLDVAFSPS---KATG 164 (302)
Q Consensus 100 l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~T------------a~~l~~~~~~~~~G~~~~~~p~---~~~~ 164 (302)
+...|.|+.+|....+.+.+ .+.+..++.++.... ...+++.++-....+...++.. ...-
T Consensus 169 ~~~ad~ii~~S~~~~~~~~~----~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~ 244 (412)
T PRK10307 169 LRRFDNVSTISRSMMNKARE----KGVAAEKVIFFPNWSEVARFQPVADADVDALRAQLGLPDGKKIVLYSGNIGEKQGL 244 (412)
T ss_pred HhhCCEEEecCHHHHHHHHH----cCCCcccEEEECCCcCHhhcCCCCccchHHHHHHcCCCCCCEEEEEcCccccccCH
Confidence 35689999999988887643 233334455443221 1123322210000111222221 2244
Q ss_pred HHHHHhcccCCC-CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHH--
Q 022128 165 KILASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVR-- 241 (302)
Q Consensus 165 e~L~~~L~~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~-- 241 (302)
+.|++++..... ++-+++++.....++.+.+..++.|.. .+...-. . ..+++...+...|+.+++|-....
T Consensus 245 ~~li~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~--~v~f~G~--~--~~~~~~~~~~~aDi~v~ps~~e~~~~ 318 (412)
T PRK10307 245 ELVIDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLP--NVHFLPL--Q--PYDRLPALLKMADCHLLPQKAGAADL 318 (412)
T ss_pred HHHHHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCC--ceEEeCC--C--CHHHHHHHHHhcCEeEEeeccCcccc
Confidence 667776654322 234566554434456677667766653 2222111 1 112233334567887777653221
Q ss_pred ---HHHHHhhhcccCCCceEEEE---CHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 242 ---SSWVNLISDTEQWSNSVACI---GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 242 ---~~~~~~l~~~~~~~~~i~~I---G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+.+++.+. .++++++. |....+.++..| ..+ +.-+.+++.++|.+.+.
T Consensus 319 ~~p~kl~eama----~G~PVi~s~~~g~~~~~~i~~~G---~~~-~~~d~~~la~~i~~l~~ 372 (412)
T PRK10307 319 VLPSKLTNMLA----SGRNVVATAEPGTELGQLVEGIG---VCV-EPESVEALVAAIAALAR 372 (412)
T ss_pred cCcHHHHHHHH----cCCCEEEEeCCCchHHHHHhCCc---EEe-CCCCHHHHHHHHHHHHh
Confidence 01222221 25667664 222445554222 233 44578999999987654
No 416
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=36.28 E-value=1.1e+02 Score=28.64 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=60.3
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCc
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSN 256 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~ 256 (302)
...||+++.+..-..++.-.++..|.+|.-+.=|..-|..+. ...-.+|-.+.+.+++ +..+..+.+ +-+
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~APAmqV-------Ahrs~Vi~MlD~~al~-avv~rekPd--~IV 80 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-------AHRSYVIDMLDGDALR-AVVEREKPD--YIV 80 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCChhhhh-------hhheeeeeccCHHHHH-HHHHhhCCC--eee
Confidence 356899998877778889999999999999999977664432 1244566677777777 666654432 111
Q ss_pred -eEEEECHHHHHHHHHcCCCe
Q 022128 257 -SVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 257 -~i~~IG~~Ta~~l~~~G~~~ 276 (302)
.+-+|---+-..+++.|+.+
T Consensus 81 pEiEAI~td~L~elE~~G~~V 101 (394)
T COG0027 81 PEIEAIATDALVELEEEGYTV 101 (394)
T ss_pred ehhhhhhHHHHHHHHhCCceE
Confidence 13355555566667777763
No 417
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=36.16 E-value=4.4e+02 Score=26.05 Aligned_cols=186 Identities=9% Similarity=0.049 Sum_probs=88.5
Q ss_pred HhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceec----cCCCccHHHHHHhcc
Q 022128 97 LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF----SPSKATGKILASELP 172 (302)
Q Consensus 97 l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~----~p~~~~~e~L~~~L~ 172 (302)
+.....+|.||..|....+.+.+.+.+.+....+++++..++-..+.... .......+.+ .|.+ .-+.|++++.
T Consensus 265 ~~~~~~~D~iI~~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~-~~r~~~~il~vGrl~~~K-g~~~li~A~~ 342 (500)
T TIGR02918 265 FSNADYIDFFITATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE-QERKPFSIITASRLAKEK-HIDWLVKAVV 342 (500)
T ss_pred HhchhhCCEEEECCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc-cccCCeEEEEEecccccc-CHHHHHHHHH
Confidence 44556789999999888777766665543333455555444322111000 0000111222 2223 3455666654
Q ss_pred cCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhc
Q 022128 173 KNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 173 ~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
... .++-++.+..+...++.|.+..++.|.. ....+.- .. +..+. ....|+.+++|-. + .|--.+-+
T Consensus 343 ~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~--~~V~f~G--~~-~~~~~---~~~adv~v~pS~~--E-gfgl~~lE 411 (500)
T TIGR02918 343 KAKKSVPELTFDIYGEGGEKQKLQKIINENQAQ--DYIHLKG--HR-NLSEV---YKDYELYLSASTS--E-GFGLTLME 411 (500)
T ss_pred HHHhhCCCeEEEEEECchhHHHHHHHHHHcCCC--CeEEEcC--CC-CHHHH---HHhCCEEEEcCcc--c-cccHHHHH
Confidence 322 1344555554434446666666666542 1111111 11 22222 3567999999842 3 33111111
Q ss_pred ccCCCceEEEEC--HHHHHHHHHcCCCeEEecC---CCC----hHHHHHHHHHHH
Q 022128 251 TEQWSNSVACIG--ETTASAAKRLGLKNVYYPT---HPG----LEGWVDSILEAL 296 (302)
Q Consensus 251 ~~~~~~~i~~IG--~~Ta~~l~~~G~~~~~v~~---~~~----~~~ll~~i~~~~ 296 (302)
....++++++-- -...+.+ +-|..-.+++. ..+ .++|.++|.+.+
T Consensus 412 Ama~G~PVI~~dv~~G~~eiI-~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 412 AVGSGLGMIGFDVNYGNPTFI-EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYF 465 (500)
T ss_pred HHHhCCCEEEecCCCCCHHHc-cCCCCEEEEeCCccccchhHHHHHHHHHHHHHh
Confidence 112256777632 1233444 34666555542 123 667777776655
No 418
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.14 E-value=2.1e+02 Score=26.12 Aligned_cols=125 Identities=13% Similarity=0.046 Sum_probs=67.5
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--H--HHHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--G--SVFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v--~~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+.. ..+++.+.+. .....|.|++--|-- . +..++.+.-. ..+++.-+-.|.
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~- 127 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEAT---TQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGR- 127 (282)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHH-
Confidence 34566778887655443221 2234444443 446789999987732 2 1122222110 112222211111
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEe
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
|. . |-. .+.| .|+.+..+.|..+.. .|++++++ |++....-|...|..+|+.|+.+.
T Consensus 128 ----l~-~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtich 187 (282)
T PRK14169 128 ----LW-A------NEP-TVVA--STPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAH 187 (282)
T ss_pred ----Hh-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEC
Confidence 11 1 211 1333 467777776665432 68888777 777777788999999999887553
No 419
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=36.13 E-value=1.6e+02 Score=25.57 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEC
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG 135 (302)
.-+.+.++++|..+.....+.. ..+. ..+.+.++.-.++++|++++-.....+.+.+.+.++ .++.+++.+
T Consensus 145 ~gf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d 222 (275)
T cd06295 145 EGYREALAEAGLPLDPRLVAPG--DFTEESGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFD 222 (275)
T ss_pred HHHHHHHHHcCCCCChhhEEec--cCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeC
Confidence 3466677777754432212111 1111 234455544446889988887666667777777765 367788887
Q ss_pred hhhH
Q 022128 136 AGTA 139 (302)
Q Consensus 136 ~~Ta 139 (302)
....
T Consensus 223 ~~~~ 226 (275)
T cd06295 223 DIPL 226 (275)
T ss_pred CchH
Confidence 6543
No 420
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=36.03 E-value=3.5e+02 Score=24.92 Aligned_cols=213 Identities=18% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~--- 126 (302)
+.+|-..-+--.+....+.|++.|+.++.- .+ ++.+-+.|||.+=-.-....+.+.+.++
T Consensus 30 ~~~iytlG~iIHN~~vv~~L~~~GV~~v~~----------~~-------~v~~~~~ViirAHGv~~~~~~~~~~~g~~vi 92 (298)
T PRK01045 30 GAPIYVRHEIVHNRYVVERLEKKGAIFVEE----------LD-------EVPDGAIVIFSAHGVSPAVREEAKERGLTVI 92 (298)
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCEEecC----------cc-------cCCCCCEEEEeCCCCCHHHHHHHHHCCCeEE
Confidence 455766677777888999999999987741 00 1122234444443222333333443332
Q ss_pred -------------------CCceEEEEChhhHHHHHHHhhccCCCCc---eeccCCCccHHHHHHhcccCCCCCCEEEEe
Q 022128 127 -------------------PNVRIGVVGAGTASIFEEVIQSSKCSLD---VAFSPSKATGKILASELPKNGKKKCTVLYP 184 (302)
Q Consensus 127 -------------------~~~~i~aVG~~Ta~~l~~~~~~~~~G~~---~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~ 184 (302)
++-.++.+|+.-.-..+-.+ |+. ..++ .+.+.+ +.|.. ...+++.++
T Consensus 93 DaTCP~V~k~~~~v~~~~~~Gy~vvi~G~~~HpEv~gi~-----g~~~~~~~vv---~~~~e~-~~l~~--~~~~~v~vv 161 (298)
T PRK01045 93 DATCPLVTKVHKEVARMSREGYEIILIGHKGHPEVEGTM-----GQAPGGVYLV---ESPEDV-AKLEV--KDPDKLALV 161 (298)
T ss_pred eCCCccchHHHHHHHHHHhCCCEEEEEeCCCCCeeeeec-----cCcCCCEEEE---cCHHHH-hhccc--CCCCcEEEE
Confidence 34566666766555444433 221 1111 234444 34421 123566665
Q ss_pred CCCc----chhhHHHHHHhCCCeeEEEee--eeeecCCCCcH-HHHHH-cCCCCEEEEE----CcHHHHHHHHHhhhccc
Q 022128 185 ASAK----ASNEIEEGLSNRGFEVVRLNT--YTTEPVHHVDQ-TVLKQ-ALSIPVVAVA----SPSAVRSSWVNLISDTE 252 (302)
Q Consensus 185 rg~~----~~~~L~~~L~~~G~~v~~~~v--Y~~~~~~~~~~-~~~~~-~~~~d~ivft----S~s~v~~~~~~~l~~~~ 252 (302)
.=-. .-..+.+.|++.. .++.+ +.+.+..-... +.... ....|++++- |+++-+ +++..++..
T Consensus 162 sQTT~~~~~~~~i~~~l~~~~---~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~SsNT~k--L~~i~~~~~ 236 (298)
T PRK01045 162 TQTTLSVDDTAEIIAALKERF---PEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSSNSNR--LREVAEEAG 236 (298)
T ss_pred EcCCCcHHHHHHHHHHHHHhC---cCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCccHHH--HHHHHHHHC
Confidence 4322 2235777777654 33455 66666543332 12222 3679987764 555555 566665431
Q ss_pred CCCceEEEECHHHHHHHHH---cCCCeE-EecCCCChHHHHHHHHHHHHccC
Q 022128 253 QWSNSVACIGETTASAAKR---LGLKNV-YYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 253 ~~~~~i~~IG~~Ta~~l~~---~G~~~~-~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
.+.+-|. +++.|.. .|...+ +.+.-.+++.+++.+..++...+
T Consensus 237 ---~~t~~Ie--~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~~ 283 (298)
T PRK01045 237 ---APAYLID--DASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKELG 283 (298)
T ss_pred ---CCEEEEC--ChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC
Confidence 1222221 2233322 355555 55777899999999998887643
No 421
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=35.76 E-value=1.6e+02 Score=25.24 Aligned_cols=74 Identities=16% Similarity=0.017 Sum_probs=40.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
-+.+.++++|+++............+ ...+.+.+..-...|+|+.+|......+..++.+.++ .++.+++++..
T Consensus 136 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 136 GYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred HHHHHHHHcCCCCCcceEEeCCCChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 34567777775543222221111101 1234445533345788888887777777788877765 35666666544
No 422
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=35.65 E-value=96 Score=28.90 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f 117 (302)
.++.|++|+..-.-+..+.+.+.|++.|+++. ....=+...-. ...+..........++|+.|-+-+|+.-
T Consensus 223 ~~l~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~yt-~~dl~~l~~~a~~~~~iltTeKDaVKl~ 294 (326)
T PF02606_consen 223 EPLKGKPVLAFSGIGNPERFFDTLESLGIEVVGTLAFPDHHRYT-EQDLEKLEAEAKAAGIILTTEKDAVKLP 294 (326)
T ss_pred hhccCCeeEEEEEcCChHHHHHHHHHcCCeEEEeeECCCCCCCC-HHHHHHHHHhhcccceEEecHHHHhhCh
Confidence 45788999888888889999999999999988 34443333222 2344444322233338999999999853
No 423
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=35.62 E-value=82 Score=26.03 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=33.4
Q ss_pred HHHHhcccCCCCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 166 ILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 166 ~L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.+++.+.+...+|+++++. .+..+...+.+.|++.|++++.+.-|..-
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence 3444444555567776665 44444788899999999999888887653
No 424
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=35.48 E-value=1.2e+02 Score=28.16 Aligned_cols=62 Identities=16% Similarity=0.212 Sum_probs=40.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
.|.+|+++.+......+...++..|+++..+|+-.- ...|.+.+.+.+..-.+.+.|.++.+
T Consensus 79 ~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~ 140 (368)
T PRK13479 79 RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED-EPPDAAEVEAALAADPRITHVALVHC 140 (368)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC-CCCCHHHHHHHHHhCCCCcEEEEEcc
Confidence 456788887655445556777889999999886421 12345667776643345667777776
No 425
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=35.48 E-value=79 Score=28.68 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC---CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aV 134 (302)
+-+.+.+..+.|+++|..++.+.=-... ..+.+.+.|..+ +-..--|+||..+...++... .+..++|+|
T Consensus 25 ~ipga~e~l~~L~~~g~~~iflTNn~~~---s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~----~~~~kv~vi 97 (269)
T COG0647 25 AIPGAAEALKRLKAAGKPVIFLTNNSTR---SREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQ----KPGKKVYVI 97 (269)
T ss_pred cCchHHHHHHHHHHcCCeEEEEeCCCCC---CHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhh----CCCCEEEEE
Confidence 3457888999999999988865322222 223355555542 122334669999888776532 134799999
Q ss_pred ChhhH-HHHHHHhhccCCCCcee
Q 022128 135 GAGTA-SIFEEVIQSSKCSLDVA 156 (302)
Q Consensus 135 G~~Ta-~~l~~~~~~~~~G~~~~ 156 (302)
|..-- +.|+.. |+...
T Consensus 98 G~~~l~~~l~~~------G~~~~ 114 (269)
T COG0647 98 GEEGLKEELEGA------GFELV 114 (269)
T ss_pred CCcchHHHHHhC------CcEEe
Confidence 98765 667777 87653
No 426
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=35.40 E-value=1.9e+02 Score=25.87 Aligned_cols=90 Identities=13% Similarity=0.178 Sum_probs=55.7
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-HHHHHHHHhhhcccC----
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-AVRSSWVNLISDTEQ---- 253 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-~v~~~~~~~l~~~~~---- 253 (302)
++||++.|-.....|.+.|.+.|. |..-.+|..-.. ... -.....-+..-.. ..+ .+.+++.+...
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v~~sv~t~~g~~------~~~-~~~~~~~v~~G~lg~~~-~l~~~l~~~~i~~vI 71 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-VIVSVATSYGGE------LLK-PELPGLEVRVGRLGDEE-GLAEFLRENGIDAVI 71 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-EEEEEEhhhhHh------hhc-cccCCceEEECCCCCHH-HHHHHHHhCCCcEEE
Confidence 479999999999999999999997 443333332211 110 0112233455554 666 67677765421
Q ss_pred -CCceEE-EECHHHHHHHHHcCCCeE
Q 022128 254 -WSNSVA-CIGETTASAAKRLGLKNV 277 (302)
Q Consensus 254 -~~~~i~-~IG~~Ta~~l~~~G~~~~ 277 (302)
-..+++ -|+.+..+++++.|+..+
T Consensus 72 DATHPfA~~is~na~~a~~~~~ipyl 97 (249)
T PF02571_consen 72 DATHPFAAEISQNAIEACRELGIPYL 97 (249)
T ss_pred ECCCchHHHHHHHHHHHHhhcCcceE
Confidence 112222 378999999999999743
No 427
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=35.27 E-value=3.2e+02 Score=24.27 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHH
Q 022128 91 DRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILA 168 (302)
Q Consensus 91 ~~l~~~l~~l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~ 168 (302)
..+++.+ .-.+.+.||..+... .......+.+ .+++++.++......-... .+-....+.. ..++.++
T Consensus 56 ~~~~~li-~~~~v~~vig~~~s~~~~~~~~~~~~---~~vP~v~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 125 (312)
T cd06333 56 TNARKLI-EEDKVDAIIGPSTTPATMAVAPVAEE---AKTPMISLAPAAAIVEPKR------KWVFKTPQNDRLMAEAIL 125 (312)
T ss_pred HHHHHHH-hhCCeEEEECCCCCHHHHHHHHHHHh---cCCCEEEccCCccccCCCC------CcEEEcCCCcHHHHHHHH
Q ss_pred HhcccCCCCCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC-cHHHHH
Q 022128 169 SELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-PSAVRS 242 (302)
Q Consensus 169 ~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS-~s~v~~ 242 (302)
+.+..... ++|.++.++.. ...+.+.+++.|..+.....|.....+.......-...++|+|++.+ ...+-
T Consensus 126 ~~l~~~g~--~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~- 202 (312)
T cd06333 126 ADMKKRGV--KTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAA- 202 (312)
T ss_pred HHHHHcCC--CEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHH-
Q ss_pred HHHHhhhcccCCCceEEEECHHHHHHHHHcC
Q 022128 243 SWVNLISDTEQWSNSVACIGETTASAAKRLG 273 (302)
Q Consensus 243 ~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G 273 (302)
.+++.+.+.......+..-|......++..|
T Consensus 203 ~~~~~l~~~g~~~p~~~~~~~~~~~~~~~~g 233 (312)
T cd06333 203 LPAKNLRERGYKGPIYQTHGVASPDFLRLAG 233 (312)
T ss_pred HHHHHHHHcCCCCCEEeecCcCcHHHHHHhh
No 428
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.21 E-value=2e+02 Score=25.50 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=46.7
Q ss_pred CCCCEEEEECcHHH-----HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 227 LSIPVVAVASPSAV-----RSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 227 ~~~d~ivftS~s~v-----~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
.++|+|++...++- + .+.+.+... ..+.++..-.....++|+.+|.+++.+... =.+++-+.+.+++.+++
T Consensus 70 a~~dvi~~~cTsgs~~~G~~-~~~~~i~~~-~~g~p~tt~~~A~~~AL~alg~~RIalvTP-Y~~~v~~~~~~~l~~~G 145 (239)
T TIGR02990 70 EELDVVAYSCTSASVVIGDD-EVTRAINAA-KPGTPVVTPSSAAVDGLAALGVRRISLLTP-YTPETSRPMAQYFAVRG 145 (239)
T ss_pred CCCCEEEEccchhheecCHH-HHHHHHHhc-CCCCCeeCHHHHHHHHHHHcCCCEEEEECC-CcHHHHHHHHHHHHhCC
Confidence 37888887654442 2 333333321 124677777888888999999998766543 44567788888887765
No 429
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.12 E-value=3.6e+02 Score=24.79 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhhhccc--CCCceEEEEC------HHHHHHHHHcCCCeEEe-cCCCChHH
Q 022128 237 PSAVRSSWVNLISDTE--QWSNSVACIG------ETTASAAKRLGLKNVYY-PTHPGLEG 287 (302)
Q Consensus 237 ~s~v~~~~~~~l~~~~--~~~~~i~~IG------~~Ta~~l~~~G~~~~~v-~~~~~~~~ 287 (302)
|-+.+ +.+++++... ..+.++++|| ...+..|.+.|..+.+. ...++.++
T Consensus 139 PcTp~-ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e 197 (296)
T PRK14188 139 PCTPL-GCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPA 197 (296)
T ss_pred CCCHH-HHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 34455 5555555432 3355666665 78888898899987554 23344433
No 430
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=35.03 E-value=1.6e+02 Score=26.44 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=14.2
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+|.+|++.+..... ....+...|+.+..+.
T Consensus 98 ~gd~Vlv~~~~h~s--~~~~~~~~g~~~~~v~ 127 (294)
T cd00615 98 PGDKILIDRNCHKS--VINGLVLSGAVPVYLK 127 (294)
T ss_pred CCCEEEEeCCchHH--HHHHHHHCCCEEEEec
Confidence 34556665543322 3344455555554443
No 431
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=34.88 E-value=58 Score=24.39 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=23.7
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 291 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~ 291 (302)
-||+.....|++.|++++..+..-+.++.++.
T Consensus 69 ~iG~~a~~~L~~~GI~v~~~~~~~~v~eal~~ 100 (102)
T cd00853 69 AIGGPAAARLVRAGIHPIKVPEGEPIAELLEE 100 (102)
T ss_pred hcChhHHHHHHHcCCEEEEcCCCCcHHHHHHh
Confidence 59999999999999998544443456665554
No 432
>PLN02306 hydroxypyruvate reductase
Probab=34.78 E-value=4.1e+02 Score=25.36 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-hHHHHHHHHHHHHc
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKEA 124 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS-~~av~~f~~~l~~~ 124 (302)
.|-..++|+++.+-. .+...+.|++.|+++.... ......+.+++.+.+ ..++|.++..+ ..--+.+++.+.+.
T Consensus 11 ~~~~~~~v~~~~~~~-~~~~~~~L~~~~~~v~~~~--~~~~~~~~~~~~~~~--~~~~d~vi~~~~~~i~~~~l~~~~~l 85 (386)
T PLN02306 11 NPNGKYRVVSTKPMP-GTRWINLLVDQDCRVEICT--EKKTILSVEDIIALI--GDKCDGVIGQLTEDWGETLFSALSKA 85 (386)
T ss_pred CCCCCceEEEeCCCC-cHHHHHHHHhcCceEEecC--CcCCCCCHHHHHHHh--hcCCcEEEEcCCCCcCHHHHHhCCcC
Q ss_pred CCCCceEEEEChh--hHHHHHHHhhccCCCCceeccCCCccHHHHH-------------------------------Hhc
Q 022128 125 GTPNVRIGVVGAG--TASIFEEVIQSSKCSLDVAFSPSKATGKILA-------------------------------SEL 171 (302)
Q Consensus 125 ~~~~~~i~aVG~~--Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~-------------------------------~~L 171 (302)
+++-+..+.+|-. --+++++. |+.+.-.| ...++.++ ...
T Consensus 86 ~lk~I~~~~~G~D~iD~~aa~~~------gI~V~n~p-g~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~ 158 (386)
T PLN02306 86 GGKAFSNMAVGYNNVDVEAANKY------GIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLF 158 (386)
T ss_pred CceEEEECCcccccccHHHHHHC------CCEEEECC-CcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccc
Q ss_pred ccCCCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEEEeeeeeecCC--------------------CCcHHHHHHcCCCC
Q 022128 172 PKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTYTTEPVH--------------------HVDQTVLKQALSIP 230 (302)
Q Consensus 172 ~~~~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~~vY~~~~~~--------------------~~~~~~~~~~~~~d 230 (302)
......|+++.++.-..-...+.+.|. ..|.+|..+.-|...... .....+-+.+.+.|
T Consensus 159 ~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sD 238 (386)
T PLN02306 159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREAD 238 (386)
T ss_pred CCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCC
Q ss_pred EEEEECc
Q 022128 231 VVAVASP 237 (302)
Q Consensus 231 ~ivftS~ 237 (302)
+|++.-|
T Consensus 239 iV~lh~P 245 (386)
T PLN02306 239 VISLHPV 245 (386)
T ss_pred EEEEeCC
No 433
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=34.78 E-value=2e+02 Score=27.44 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=29.4
Q ss_pred CccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeee
Q 022128 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 161 ~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
....++|...+.....+|..||++...= +......+-.|+.+..++++..
T Consensus 96 ~Ga~~al~~~~~a~~~pGDeVlip~P~Y--~~y~~~~~~~gg~~v~v~l~~~ 145 (393)
T COG0436 96 AGAKEALFLAFLALLNPGDEVLIPDPGY--PSYEAAVKLAGGKPVPVPLDEE 145 (393)
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEeCCCC--cCHHHHHHhcCCEEEEEeCCcC
Confidence 3455666555555555666777776432 3345556667777777766543
No 434
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=34.75 E-value=2.4e+02 Score=23.75 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=46.2
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH--H------HHHHH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--F------LEAWK 122 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~--f------~~~l~ 122 (302)
|+|.|.--.+........|+..|+++..++. + + .+.+||.||++....-.. . .+.++
T Consensus 2 m~~~i~~~~g~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~dgiii~GG~~~~~~~~~~~~~~~~~i~ 66 (189)
T PRK13525 2 MKIGVLALQGAVREHLAALEALGAEAVEVRR------P--E-------DLDEIDGLILPGGESTTMGKLLRDFGLLEPLR 66 (189)
T ss_pred CEEEEEEcccCHHHHHHHHHHCCCEEEEeCC------h--h-------HhccCCEEEECCCChHHHHHHHHhccHHHHHH
Confidence 4555555445566777889999999887762 1 1 346799999998754221 1 01111
Q ss_pred HcCCCCceEEEEChhhHHHHHHH
Q 022128 123 EAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
+.-..+++++.|--+- +.|.+.
T Consensus 67 ~~~~~g~PilGIC~G~-QlL~~~ 88 (189)
T PRK13525 67 EFIASGLPVFGTCAGM-ILLAKE 88 (189)
T ss_pred HHHHCCCeEEEECHHH-HHHHhh
Confidence 1111366777766655 444444
No 435
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=34.71 E-value=1.1e+02 Score=28.32 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=41.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
.|.+|++..|.- ..+....+..|++++.+|+-+- ...|.+.+.+.+. -.+.+.|++++|+-
T Consensus 104 ~gd~vlv~~P~y--~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~~~-~~~~~~v~l~~p~N 164 (356)
T PRK04870 104 PGATVLAPEPGF--VMYRMSAKLAGLEFVGVPLTAD-FTLDLPAMLAAIA-EHRPALVFLAYPNN 164 (356)
T ss_pred CCCEEEECCCCH--HHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhh-cCCCCEEEEcCCCC
Confidence 477899888753 4567778889999999997421 1234566666652 23567888886654
No 436
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.68 E-value=2.4e+02 Score=25.84 Aligned_cols=153 Identities=17% Similarity=0.047 Sum_probs=78.3
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+..++.|+++..+-+-+.. ..+++.+.+ +.....|+|+.--|---..-...+.+.--+..-+=.+.+.-...|
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 128 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATT---TQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGAL 128 (282)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcCCCCHhHHHHH
Confidence 45567779888765542221 223344444 344678899988773211111111111001111111111111111
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~ 219 (302)
+. |-...+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.+.|+.|+.+.-+. ...
T Consensus 129 --~~-----g~~~~~~P--cTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-----~nl 194 (282)
T PRK14182 129 --SI-----GIAGVPRP--CTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-----ADL 194 (282)
T ss_pred --hC-----CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-----CCH
Confidence 11 21111333 46777777776543 268888777 777778889999999999887664432 111
Q ss_pred HHHHHHcCCCCEEEEECcH
Q 022128 220 QTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 220 ~~~~~~~~~~d~ivftS~s 238 (302)
.+. ..+.|+++..-+.
T Consensus 195 ~~~---~~~ADIvI~AvGk 210 (282)
T PRK14182 195 AGE---VGRADILVAAIGK 210 (282)
T ss_pred HHH---HhhCCEEEEecCC
Confidence 222 3466877766653
No 437
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=34.57 E-value=1.1e+02 Score=28.61 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=40.7
Q ss_pred CCC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH
Q 022128 49 SNP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~ 112 (302)
.|. +|++..|.- ..+...++..|++++.+|+-.-....|.+.+.+.+... .+.+.|++++|+
T Consensus 114 ~g~~~Vlv~~P~y--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~ 178 (374)
T PRK02610 114 GGEGSILVAEPTF--SMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN 178 (374)
T ss_pred CCCCeEEEcCCCh--HHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCC
Confidence 343 688888863 45677778889999999863211123456676666321 467888888874
No 438
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.50 E-value=1.4e+02 Score=25.73 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
..+.+.++++|..+............+ .+.+.+.+......++|+..+-..+..+.+.+.+.+. .++.+++.+..
T Consensus 137 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~ 216 (270)
T cd06296 137 DGYRAALAEAGIPVDPALVREGDFSTESGFRAAAELLALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDL 216 (270)
T ss_pred HHHHHHHHHcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECCh
Confidence 445667777776543222222111111 1234455544456788888888877778888888775 36667776543
No 439
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=34.50 E-value=2.7e+02 Score=23.16 Aligned_cols=63 Identities=5% Similarity=0.003 Sum_probs=39.6
Q ss_pred HHHHHHhhccCCCCceeccCCCccHHHHHHhcccC-CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN-GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~-~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+.|... |+++.......+.+-.++.+.-. ...-..++++.|+..=..|.+.|++.|..|..+-
T Consensus 73 ~~l~~~------Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 73 EAVVNQ------GFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIG 136 (160)
T ss_pred HHHHHC------CceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEe
Confidence 455565 88875442223333333333221 1123578999999999999999999998875444
No 440
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=34.47 E-value=34 Score=27.44 Aligned_cols=62 Identities=16% Similarity=0.199 Sum_probs=43.3
Q ss_pred EEChhhHHHHHHHhhccCCC--CceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCe
Q 022128 133 VVGAGTASIFEEVIQSSKCS--LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (302)
Q Consensus 133 aVG~~Ta~~l~~~~~~~~~G--~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~ 203 (302)
.||..|-+.++++ . |++.-.....+.+.|.+.+.++. -+.+++..+...+.|.+.|...+..
T Consensus 9 SIG~qtLdVi~~~------~d~f~v~~Lsa~~n~~~L~~q~~~f~---p~~v~i~~~~~~~~l~~~~~~~~~~ 72 (129)
T PF02670_consen 9 SIGTQTLDVIRKH------PDKFEVVALSAGSNIEKLAEQAREFK---PKYVVIADEEAYEELKKALPSKGPG 72 (129)
T ss_dssp HHHHHHHHHHHHC------TTTEEEEEEEESSTHHHHHHHHHHHT----SEEEESSHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhC------CCceEEEEEEcCCCHHHHHHHHHHhC---CCEEEEcCHHHHHHHHHHhhhcCCC
Confidence 3688888888887 5 66654445667888877777764 2567777777778888888655543
No 441
>PRK08105 flavodoxin; Provisional
Probab=34.42 E-value=1.9e+02 Score=23.47 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=36.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCc-cEEEEeChH-------HHHHHHHHHHHc--CCCCceE
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF-DWIIITSPE-------AGSVFLEAWKEA--GTPNVRI 131 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~-d~IifTS~~-------av~~f~~~l~~~--~~~~~~i 131 (302)
+..+.+.|++.|+++..+++..... + .+.++ -+|++||.. .+..|+..+.+. .+.++++
T Consensus 19 A~~l~~~l~~~g~~~~~~~~~~~~~----------~-~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~ 87 (149)
T PRK08105 19 AEEAEAILTAQGHEVTLFEDPELSD----------W-QPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRY 87 (149)
T ss_pred HHHHHHHHHhCCCceEEechhhCCc----------h-hcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEE
Confidence 3455667778899887776533211 1 11222 355556653 245566666654 4556676
Q ss_pred EEEChhh
Q 022128 132 GVVGAGT 138 (302)
Q Consensus 132 ~aVG~~T 138 (302)
++.|-+-
T Consensus 88 avfGlGd 94 (149)
T PRK08105 88 GVIALGD 94 (149)
T ss_pred EEEeeec
Confidence 6655543
No 442
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=34.41 E-value=1.6e+02 Score=25.23 Aligned_cols=74 Identities=16% Similarity=0.069 Sum_probs=42.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEC
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG 135 (302)
..+.+.++++|........+.. ..+. +.+.+.++.-...|+|+..+-.....+.+.+.+.++ +++.+++.+
T Consensus 140 ~gf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d 217 (268)
T cd06271 140 AGYRRALAEAGLPLDPALIVSG--DMTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFD 217 (268)
T ss_pred HHHHHHHHHhCCCCCCceEEeC--CCChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEec
Confidence 3455677777765422112221 1121 234455533345788888887777677788888775 367777777
Q ss_pred hhh
Q 022128 136 AGT 138 (302)
Q Consensus 136 ~~T 138 (302)
...
T Consensus 218 ~~~ 220 (268)
T cd06271 218 DSP 220 (268)
T ss_pred Cch
Confidence 653
No 443
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=34.33 E-value=4.4e+02 Score=25.54 Aligned_cols=219 Identities=13% Similarity=0.141 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCCCceEEEECh-
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA- 136 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~~~~i~aVG~- 136 (302)
..+.+++.+.|++.|+++...- ......+++ .++.+...-|..++.......+.|++. +.+-+.+--+|-
T Consensus 203 ~~d~~el~~lL~~~Gl~v~~~~----~~~~t~eei----~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~ 274 (443)
T TIGR01862 203 GGDAWVMRIYLEEMGIQVVATF----TGDGTYDEI----RLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFFGFT 274 (443)
T ss_pred cccHHHHHHHHHHcCCeEEEEE----CCCCCHHHH----HhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHH
Confidence 4567899999999999997411 111122333 355666666666766656666666543 443222222454
Q ss_pred hhHHHHHHHhhccCCCCcee---ccCCCccHHHHHHhcccC--CCCCCEEEEeCCCcchhhHHH-HHHhCCCeeEEEeee
Q 022128 137 GTASIFEEVIQSSKCSLDVA---FSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEE-GLSNRGFEVVRLNTY 210 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~---~~p~~~~~e~L~~~L~~~--~~~~~~vL~~rg~~~~~~L~~-~L~~~G~~v~~~~vY 210 (302)
.|.+.|++... .-|++.. ++++. -+...+.|... ...|+++.+..+....-.+.. .|.+.|.+|..+..+
T Consensus 275 ~t~~~l~~la~--~~gi~~~~e~~i~~~--~~~~~~~l~~~~~~l~gkrvai~~~~~~~~~~~~~ll~elGm~v~~~~~~ 350 (443)
T TIGR01862 275 YTAESLRAIAA--FFGIEKRAEEVIAEE--KAKWKPELDYYKERLQGKRVCLYIGGSRLWHWIGSAEEDLGMEVVAVGYE 350 (443)
T ss_pred HHHHHHHHHHH--HhCCcHHHHHHHHHH--HHHHHHHHHHHHHHhcCCeEEEECCchhHHHHHHHHHHHCCCEEEEeccc
Confidence 35555554410 0043221 01100 01111222221 115788888655544445666 888999998777443
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecC---CC--Ch
Q 022128 211 TTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT---HP--GL 285 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~---~~--~~ 285 (302)
... .......++.+ ..+.+++-...-.+ +.+.+.+. +..++.-+..-...++++|+..+.+.. .| ..
T Consensus 351 ~~~--~~~~~~~l~~l-~~~~~~v~~~~~~e--~~~~i~~~---~pdllig~s~~~~~A~~lgip~~~~~~~~~~~~~Gy 422 (443)
T TIGR01862 351 FAH--EDDYEKTMKRM-GEGTLLIDDPNELE--FEEILEKL---KPDIIFSGIKEKFVAQKLGVPYRQMHSYDNGPYHGF 422 (443)
T ss_pred ccc--HHHHHHHHHhC-CCceEEecCCCHHH--HHHHHHhc---CCCEEEEcCcchhhhhhcCCCeEecCCccccCccch
Confidence 211 11111122222 22234444433333 33333332 223444444555667777876543322 12 45
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
++.++.+.+..+
T Consensus 423 ~G~~~l~~~i~n 434 (443)
T TIGR01862 423 EGFVNFARDMYN 434 (443)
T ss_pred hHHHHHHHHHHH
Confidence 666666655543
No 444
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=34.28 E-value=4.5e+02 Score=25.67 Aligned_cols=209 Identities=11% Similarity=-0.001 Sum_probs=102.7
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeeeC----------CCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCC
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQHAQG----------PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPN 128 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~----------~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~ 128 (302)
++..++.+.|++.|+++..+|-+..-.. .....+++ +.+..+...-|..++..-....+.|++ .+.+-
T Consensus 182 ~D~~elk~lL~~~Gl~v~~l~d~~s~d~~~~~~~~~~~~gg~tlee-i~~~~~A~lniv~~~~~g~~~A~~Lee~~giP~ 260 (461)
T TIGR02931 182 GDVKELKHLLEEMDIEANVLFEIESFDSPLMPDKSAVSHGSTTIED-LTDTANAKGTIALNRYEGMKAADYLQKKFDVPA 260 (461)
T ss_pred hhHHHHHHHHHHcCCceEEeeccccccCCCCCcccccCCCCCcHHH-HHhhccCcEEEEEcHhhHHHHHHHHHHHhCCCe
Confidence 4678999999999999998876431100 00112333 234555555555555444455566654 34432
Q ss_pred ceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccC---CCCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 129 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 129 ~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~---~~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
+.+ .-+|- .|.+.|++...- -|.+. |+... -+.+.+.+.+. ...|+|+.+..+..-.--+.+.|.+.|
T Consensus 261 ~~~~~piGi~~T~~fl~~l~~~--~g~~~---~e~i~~er~~~~~~~~d~~~~~l~Gkrvai~~~~~~~~~l~~~l~elG 335 (461)
T TIGR02931 261 IIGPTPIGIRNTDTFLQNLKKM--TGKPI---PESLVKERGIAIDAIADLTHMFLADKRVAIYGNPDLVIGLAEFCLDLE 335 (461)
T ss_pred eccCCCcchHHHHHHHHHHHHH--HCCCC---CHHHHHHHHHHHHHHHhhhhHHhCCCeEEEEeCHHHHHHHHHHHHHCC
Confidence 222 33443 354445444110 04322 22111 11133333221 126889877776555566888899999
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHHc-C--CCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQA-L--SIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~-~--~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
..+.-+.+....+.... .+.++.+ . .++..++......+ +.+.+.+. .....++.-+..-...++++|+..+.
T Consensus 336 m~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~vv~~~d~~~--l~~~i~~~-~~~~Dliig~s~~~~~a~k~gip~~~ 411 (461)
T TIGR02931 336 MKPVLLLLGDDNSGYVD-DPRIKALQENVDYDMEIVTNADFWE--LESRIKNQ-GLELDLILGHSKGRFISIDYNIPMVR 411 (461)
T ss_pred CEEEEEEECCCCcccch-hHHHHHHHhhCCCCceEEeCCCHHH--HHHHHHhc-CCCCCEEEECcchHHHHHHcCCCEEE
Confidence 99876555432222111 2223222 2 12344444433322 33444321 01234554555556667778876543
No 445
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=34.27 E-value=3.6e+02 Score=26.26 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=62.9
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceecc--CCCccHHHHHHhcccCCCCCCEEEEeCC
Q 022128 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS--PSKATGKILASELPKNGKKKCTVLYPAS 186 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~--p~~~~~e~L~~~L~~~~~~~~~vL~~rg 186 (302)
.++.+|+..-+..+.++..+ -.|..|..-.-..+..-+ ...+..++ |...-.+.+++.|.+.. .++|+|+.=
T Consensus 323 i~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~---~~~d~VvvDPPR~G~~~~~lk~l~~~~--p~~IvYVSC 396 (432)
T COG2265 323 ISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEG---YKPDVVVVDPPRAGADREVLKQLAKLK--PKRIVYVSC 396 (432)
T ss_pred cCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhcccc---CCCCEEEECCCCCCCCHHHHHHHHhcC--CCcEEEEeC
Confidence 47788888777777777777 556666654333322100 03344333 33444557778887764 468899865
Q ss_pred Ccc--hhhHHHHHHhCCCeeEEEeeeeeecCCC
Q 022128 187 AKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (302)
Q Consensus 187 ~~~--~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (302)
+.. ..+ ...|.+.|..+.++...++-|...
T Consensus 397 NP~TlaRD-l~~L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 397 NPATLARD-LAILASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred CHHHHHHH-HHHHHhCCeEEEEEEEeccCCCcc
Confidence 443 233 345778888888888888777654
No 446
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=34.22 E-value=2.2e+02 Score=27.08 Aligned_cols=123 Identities=4% Similarity=-0.090 Sum_probs=61.8
Q ss_pred HHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH---
Q 022128 164 GKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--- 238 (302)
Q Consensus 164 ~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s--- 238 (302)
-+.|++.+..... .+-++.++.....++.+.+..++.|..- .+...- .. +.+++.+.+...|+.+++|-.
T Consensus 237 ~~~ll~a~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~-~V~~~G--~~--~~~el~~~l~~aDv~v~pS~~~~~ 311 (406)
T PRK15427 237 LHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLED-VVEMPG--FK--PSHEVKAMLDDADVFLLPSVTGAD 311 (406)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCC-eEEEeC--CC--CHHHHHHHHHhCCEEEECCccCCC
Confidence 3445555543221 2235555554444567777777776431 111111 11 112333345678999998853
Q ss_pred ----HHHHHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 239 ----AVRSSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 239 ----~v~~~~~~~l~~~~~~~~~i~~IG-~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
++-..+++.+. .++++++-. ....+.++ .|..-..+ +..+.++|.++|.+.+.
T Consensus 312 g~~Eg~p~~llEAma----~G~PVI~t~~~g~~E~v~-~~~~G~lv-~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 312 GDMEGIPVALMEAMA----VGIPVVSTLHSGIPELVE-ADKSGWLV-PENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCccCccHHHHHHHh----CCCCEEEeCCCCchhhhc-CCCceEEe-CCCCHHHHHHHHHHHHh
Confidence 22102333332 256666642 22233333 24444344 44589999999988776
No 447
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=34.13 E-value=1.8e+02 Score=26.33 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=27.8
Q ss_pred EEEECcHHHHHHHHHhhhcccCCCceEEEECHHHH-HHHHHcCCCe
Q 022128 232 VAVASPSAVRSSWVNLISDTEQWSNSVACIGETTA-SAAKRLGLKN 276 (302)
Q Consensus 232 ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta-~~l~~~G~~~ 276 (302)
-++||..+.. .+++.... ..++++||+.-- +.++.+|+..
T Consensus 73 ~i~TS~~at~-~~l~~~~~----~~kv~viG~~~l~~~l~~~G~~~ 113 (269)
T COG0647 73 DIVTSGDATA-DYLAKQKP----GKKVYVIGEEGLKEELEGAGFEL 113 (269)
T ss_pred HeecHHHHHH-HHHHhhCC----CCEEEEECCcchHHHHHhCCcEE
Confidence 4789988888 56543221 268888886554 7788889864
No 448
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=34.04 E-value=2e+02 Score=21.49 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=61.5
Q ss_pred CccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH--cCCCCEEEEECcH
Q 022128 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS 238 (302)
Q Consensus 161 ~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~ivftS~s 238 (302)
...+..+++.|.+. +.+++++..+... .+.+++.|+. ++.- +....+.++. +.+.+.++.+++.
T Consensus 7 g~~~~~i~~~L~~~---~~~vvvid~d~~~---~~~~~~~~~~-----~i~g---d~~~~~~l~~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 7 GRIGREIAEQLKEG---GIDVVVIDRDPER---VEELREEGVE-----VIYG---DATDPEVLERAGIEKADAVVILTDD 72 (116)
T ss_dssp SHHHHHHHHHHHHT---TSEEEEEESSHHH---HHHHHHTTSE-----EEES----TTSHHHHHHTTGGCESEEEEESSS
T ss_pred CHHHHHHHHHHHhC---CCEEEEEECCcHH---HHHHHhcccc-----cccc---cchhhhHHhhcCccccCEEEEccCC
Confidence 34466777777762 3578888765543 6677888844 2222 2222334444 3678888888777
Q ss_pred HHHHHHHH--hhhcccCCCceEE--EECHHHHHHHHHcCCCeEEec
Q 022128 239 AVRSSWVN--LISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 239 ~v~~~~~~--~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~ 280 (302)
-.. ++.- .+++. ....+++ +-.+.-++.+++.|...++.|
T Consensus 73 d~~-n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 73 DEE-NLLIALLAREL-NPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHH-HHHHHHHHHHH-TTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHH-HHHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 666 5432 22221 1224444 457888999999999987643
No 449
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=34.02 E-value=1.1e+02 Score=29.15 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=37.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT 109 (302)
.|..|++..|.- ..+...++..|++++.+|+-+ ..-|.+.+++.+. .+.+.++++
T Consensus 164 pgd~Vlv~~P~y--~~~~~~~~~~g~~~~~v~~~~--~g~~~~~l~~~~~--~~~k~i~~~ 218 (431)
T PRK15481 164 PGDSVAVEDPCF--LSSINMLRYAGFSASPVSVDA--EGMQPEKLERALA--QGARAVILT 218 (431)
T ss_pred CCCEEEEeCCCc--HHHHHHHHHcCCeEEeeccCC--CCCCHHHHHHHHh--cCCCEEEEC
Confidence 477888888853 557778888999999999722 1234566666663 245677776
No 450
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=33.97 E-value=3.2e+02 Score=24.51 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=83.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-----CCceEEEEChhhH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-----PNVRIGVVGAGTA 139 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~-----~~~~i~aVG~~Ta 139 (302)
....+++.|.+..+.|+ ++.+ .+...+.+.+.. .++..+-+|-|.=...+ +.+.+... -.+..+..
T Consensus 24 hn~~~~~~gl~~~y~~~-~v~~-~~l~~~~~~~~~-~~~~G~nVT~P~K~~~~-~~~d~~~~~A~~igavNtv~~----- 94 (278)
T PRK00258 24 HNAAFKQLGLDGVYLAI-LVPP-EDLEDAVKGFFA-LGGRGANVTVPFKEAAF-ALADELSERARLIGAVNTLVL----- 94 (278)
T ss_pred HHHHHHHcCCCcEEEEE-ecCH-HHHHHHHHHHHh-CCCCEEEECcCCHHHHH-HHhhcCCHHHHHhCCceEEEe-----
Confidence 45577899999888765 4432 222222233323 36899999999877653 44433210 01111111
Q ss_pred HHHHHHhhccCCCCceeccCCCccHHHHHHhcccC---CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~---~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
+- | .+....-+..+++..|... ...+++++++.+.+....+...|...|+ .++.++.+....
T Consensus 95 ----~~------g---~l~G~NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~~~~ 159 (278)
T PRK00258 95 ----ED------G---RLIGDNTDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGV--AEITIVNRTVER 159 (278)
T ss_pred ----eC------C---EEEEEcccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 00 1 0122345677777777632 2357789999877777888888988883 234454443211
Q ss_pred CC-c-HH------------HHHHcCCCCEEEEECcHHHH
Q 022128 217 HV-D-QT------------VLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 217 ~~-~-~~------------~~~~~~~~d~ivftS~s~v~ 241 (302)
.. . +. ....+...|+|+-+.|....
T Consensus 160 a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~ 198 (278)
T PRK00258 160 AEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS 198 (278)
T ss_pred HHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC
Confidence 00 0 00 00112467888888877664
No 451
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.97 E-value=3.5e+02 Score=24.23 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=45.4
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-hHHHHHHHHHHHH
Q 022128 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKE 123 (302)
Q Consensus 50 g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS-~~av~~f~~~l~~ 123 (302)
.++|.+...... ...+.+.+++.|+++...-.+... ..|.......+. -.+.|.|++.+ +.....|++++.+
T Consensus 137 ~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~ 214 (312)
T cd06346 137 YKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEG-KSSYSSEVAAAA-AGGPDALVVIGYPETGSGILRSAYE 214 (312)
T ss_pred CCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCC-CCCHHHHHHHHH-hcCCCEEEEecccchHHHHHHHHHH
Confidence 467766554332 245677888899988753222211 124433333332 25678887763 4456667788888
Q ss_pred cCCCCceEE
Q 022128 124 AGTPNVRIG 132 (302)
Q Consensus 124 ~~~~~~~i~ 132 (302)
.++ +.+++
T Consensus 215 ~G~-~~~~~ 222 (312)
T cd06346 215 QGL-FDKFL 222 (312)
T ss_pred cCC-CCceE
Confidence 777 33443
No 452
>PRK07206 hypothetical protein; Provisional
Probab=33.88 E-value=3.7e+02 Score=25.44 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEe
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~ 79 (302)
+++||+.-+......+.+.+++.|++++.+
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~G~~~v~v 31 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKRGIEPIAV 31 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHcCCeEEEE
Confidence 367888887766778899999999988755
No 453
>PF02547 Queuosine_synth: Queuosine biosynthesis protein; InterPro: IPR003699 This entry represents the queuosine biosynthesis proteins QueA. Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine. The hypermodified nucleoside is found in bacteria and eukaryotes []. Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (QueA) catalyses the formation of the 2,3-epoxy-4,5-dihydroxycyclopentane ring of the Q precursor epoxyqueuosine (oQ). S-adenosyl-L-methionine (AdoMet) reacts with 7-aminomethyl-7-deazaguanine of tRNA at position 34 to yield adenine, methionine, and a modified tRNA with oQ at position 34. QueA consists of two domains: domain 1 has 3 layers alpha/beta/alpha, while domain 2 is a closed beta-barrel with Greek-key topology [].; GO: 0016740 transferase activity, 0016853 isomerase activity, 0008616 queuosine biosynthetic process; PDB: 1WDI_A 1VKY_B 1YY3_A.
Probab=33.73 E-value=1.8e+02 Score=27.44 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=44.2
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCc-HHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCC
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWS 255 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~ 255 (302)
.+.|.-|.+... .+.|.+.|++.|+++..+...-=.-.-.+. .+-++...-..=...-+.++++ .+-+.-. .+
T Consensus 173 ~GSvAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHVG~GTF~pV~~e~i~~H~mh~E~~~I~~~ta~-~i~~ak~----~G 247 (341)
T PF02547_consen 173 PGSVAAPTAGLHFTEELLERLKAKGVEIAFVTLHVGLGTFRPVRVEDIEEHKMHSEYYEIPEETAE-AINKAKA----EG 247 (341)
T ss_dssp -------SGGGG--HHHHHHHHHHTEEEEEEEEEECGGGG---------------EEEEE-HHHHH-HHHHHHH----TT
T ss_pred CCeEeCCCCCCCCCHHHHHHHHHCCCeEEEEEEEeccCcccccCcCcccCCCCcceEEEECHHHHH-HHHHHHH----hC
Confidence 345666655433 678999999999988776654322110000 0111111111223555677777 6544322 25
Q ss_pred ceEEEECHHHHHHHHHc
Q 022128 256 NSVACIGETTASAAKRL 272 (302)
Q Consensus 256 ~~i~~IG~~Ta~~l~~~ 272 (302)
-+|+|+|-++..+|+..
T Consensus 248 ~RViAVGTT~vRaLEsa 264 (341)
T PF02547_consen 248 GRVIAVGTTVVRALESA 264 (341)
T ss_dssp --EEEESHHHHHHHHHH
T ss_pred CcEEEEccHHHHHHhhh
Confidence 68999999999999985
No 454
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=33.72 E-value=1.3e+02 Score=26.96 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=40.4
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
..|.|++|.+++.......+...|++.|+++..+.+.. ... .+....+ .-++.|+++...|..
T Consensus 96 ~DLkGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~---~~~-~~~~~al-~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 96 EDLKGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILN---LKP-PQIVAAW-QRGDIDAAYVWPPAL 158 (300)
T ss_pred hHcCCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEe---cCc-HHHHHHH-HcCCcCEEEEecHHH
Confidence 47889999998766555567778888998765433222 221 2233444 347788888777643
No 455
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=33.63 E-value=3.3e+02 Score=26.70 Aligned_cols=95 Identities=11% Similarity=0.073 Sum_probs=57.6
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
.-+.|+++++.-...+..-+...|++.|.+++..-. +... .+.+...++.+.. +.+++..++-.+ +.+.+.+.
T Consensus 331 ~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~-~~~~---~~~~~~~~~~~~~-~~~i~~~~d~~e-l~~~i~~~- 403 (466)
T TIGR01282 331 PRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY-EFAH---NDDYERTTKYMKD-GTLIYDDVTHYE-FEEFVEKL- 403 (466)
T ss_pred HhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee-ecCC---HHHHHHHHHhcCC-CeEEeeCCCHHH-HHHHHHHh-
Confidence 578899999887666778888999999999973322 1111 2334444434443 667766655444 33444443
Q ss_pred CCCceEEEEChhhHHHHHHHhhccCCCCce
Q 022128 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (302)
Q Consensus 126 ~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~ 155 (302)
+..++.-|.+-....++. |+..
T Consensus 404 --~pDl~ig~~~~~~~a~k~------gIP~ 425 (466)
T TIGR01282 404 --KPDLVGSGIKEKYVFQKM------GVPF 425 (466)
T ss_pred --CCCEEEecCCccceeeec------CCCc
Confidence 344666666655555565 7765
No 456
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=33.50 E-value=45 Score=31.84 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=36.3
Q ss_pred CCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEE-EECcHHHH
Q 022128 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVR 241 (302)
Q Consensus 178 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~iv-ftS~s~v~ 241 (302)
.+|+|++.+... .+.+.+.|++.|+++..+.-++..|......+..+.+ .++|+|+ +-..+..+
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD 92 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMD 92 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHH
Confidence 368998887642 3467888999998764333232222222222222222 4789877 66555555
No 457
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.44 E-value=2.4e+02 Score=25.87 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=67.1
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChHH--HH--HHHHHHHHc-CCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~a--v~--~f~~~l~~~-~~~~~~i~aVG~~ 137 (302)
.+..++.|+++..+-+-+. ...+++.+.+. .....|+|++--|-- .+ ..++.+... ..+++.-+-.|.
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~- 128 (284)
T PRK14170 53 QKRTEEAGMKSVLIELPEN---VTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGN- 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhH-
Confidence 3456677888765443222 12234444443 446788999887632 21 122221110 112222222221
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhCCCeeEEEe
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
|- . |-. .+.| -|+.+.++.|..+. ..|++++++ ||.....-|...|.++|+.|+.+.
T Consensus 129 ----l~-~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich 188 (284)
T PRK14170 129 ----LF-I------GKD-SFVP--CTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH 188 (284)
T ss_pred ----Hh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 11 1 322 1343 45777777776543 268888777 777777888999999999886553
No 458
>COG1841 RpmD Ribosomal protein L30/L7E [Translation, ribosomal structure and biogenesis]
Probab=33.42 E-value=74 Score=21.49 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=30.0
Q ss_pred ECHHHHHHHHHcCCC----eEEecCCCChHHHHHHHHHHH
Q 022128 261 IGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 261 IG~~Ta~~l~~~G~~----~~~v~~~~~~~~ll~~i~~~~ 296 (302)
.-+...+.++.+|++ .+++.+.|..-+|++.+..++
T Consensus 12 ~~~~~r~tl~~LgL~kin~~v~~~dtp~irGMi~kV~~lV 51 (55)
T COG1841 12 RPPKIRKTLRLLGLRKINHTVIVEDTPAVRGMLNKVKHLV 51 (55)
T ss_pred CChHHHHHHHHhCCCccCCEEEEcCCHHHHHHHHHHHhhe
Confidence 457788889999997 367889999999999998875
No 459
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.38 E-value=2e+02 Score=26.37 Aligned_cols=81 Identities=12% Similarity=0.024 Sum_probs=46.5
Q ss_pred CeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-ChHHHHHHHHHHHHc
Q 022128 51 PKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAWKEA 124 (302)
Q Consensus 51 ~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT-S~~av~~f~~~l~~~ 124 (302)
++|.+.-... ..+.+...+++.|+++...-.+... ..|+..+...+. -.+.|.|++. +......|++++.+.
T Consensus 145 ~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~i~~l~-~~~~d~v~~~~~~~~~~~~~~~~~~~ 222 (347)
T cd06340 145 KTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPAN-ARDLTSEVLKLK-AANPDAILPASYTNDAILLVRTMKEQ 222 (347)
T ss_pred ceEEEEecCchHhHHHHHHHHHHHHHcCCEEEEeeccCCC-CcchHHHHHHHH-hcCCCEEEEcccchhHHHHHHHHHHc
Confidence 5666555432 2244556788899998864444432 234443333442 2457777765 445556688888888
Q ss_pred CCCCceEEE
Q 022128 125 GTPNVRIGV 133 (302)
Q Consensus 125 ~~~~~~i~a 133 (302)
++....++.
T Consensus 223 G~~~~~~~~ 231 (347)
T cd06340 223 RVEPKAVYS 231 (347)
T ss_pred CCCCcEEEe
Confidence 775444433
No 460
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=33.37 E-value=1e+02 Score=28.30 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=36.1
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
| +|+++.|. -..+...++..|+++..+| |.+.+.+.+ .+.+.|++++|+
T Consensus 87 g-~vl~~~p~--y~~~~~~~~~~g~~~~~~~--------d~~~l~~~~---~~~~~v~i~~p~ 135 (330)
T TIGR01140 87 G-RVLVLAPT--YSEYARAWRAAGHEVVELP--------DLDRLPAAL---EELDVLVLCNPN 135 (330)
T ss_pred C-eEEEeCCC--cHHHHHHHHHcCCEEEEeC--------CHHHHHhhc---ccCCEEEEeCCC
Confidence 5 79998775 3457778889999998887 455566554 346788889875
No 461
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=33.34 E-value=3.5e+02 Score=24.07 Aligned_cols=185 Identities=13% Similarity=0.078 Sum_probs=84.5
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHh--hccCCCCceeccCC---CccHHHHHHhcccC
Q 022128 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVI--QSSKCSLDVAFSPS---KATGKILASELPKN 174 (302)
Q Consensus 100 l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~--~~~~~G~~~~~~p~---~~~~e~L~~~L~~~ 174 (302)
+...|.++.+|....+.+.+.. +....++.++....-...-... ......+...++.. ...-+.+++.+...
T Consensus 128 ~~~~~~vi~~s~~~~~~l~~~~---~~~~~~~~vi~~~~d~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l 204 (355)
T cd03799 128 LARADFVVAISEYNRQQLIRLL---GCDPDKIHVVHCGVDLERFPPRPPPPPGEPLRILSVGRLVEKKGLDYLLEALALL 204 (355)
T ss_pred HhhCCEEEECCHHHHHHHHHhc---CCCcccEEEEeCCcCHHHcCCccccccCCCeEEEEEeeeccccCHHHHHHHHHHH
Confidence 3568899999988877765532 2222233333322211100000 00000122222211 12345555655443
Q ss_pred CC--CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-------HHHHHHH
Q 022128 175 GK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSSWV 245 (302)
Q Consensus 175 ~~--~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-------~v~~~~~ 245 (302)
.. ++-++.+..+....+.+.+.+++.|..- .+..+-.. + .+++...+...|+.+++|.. +.-..++
T Consensus 205 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~-~v~~~g~~--~--~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~ 279 (355)
T cd03799 205 KDRGIDFRLDIVGDGPLRDELEALIAELGLED-RVTLLGAK--S--QEEVRELLRAADLFVLPSVTAADGDREGLPVVLM 279 (355)
T ss_pred hhcCCCeEEEEEECCccHHHHHHHHHHcCCCC-eEEECCcC--C--hHHHHHHHHhCCEEEecceecCCCCccCccHHHH
Confidence 22 2345555555455566666666654321 12222211 1 22333334678888887764 1111223
Q ss_pred HhhhcccCCCceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 246 NLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+.+. .++++++.... ..+.+++ |-.. ++.+..+.++++++|.+.+..
T Consensus 280 Ea~a----~G~Pvi~~~~~~~~~~i~~-~~~g-~~~~~~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 280 EAMA----MGLPVISTDVSGIPELVED-GETG-LLVPPGDPEALADAIERLLDD 327 (355)
T ss_pred HHHH----cCCCEEecCCCCcchhhhC-CCce-EEeCCCCHHHHHHHHHHHHhC
Confidence 3332 24566654322 2233333 3233 333445889999999887643
No 462
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=33.22 E-value=1.6e+02 Score=21.35 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=32.2
Q ss_pred CccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 161 ~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
..++..+++.|.... ++.+++++.+........+.+ +.| +.-|-.+|.
T Consensus 55 ~~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~~~~~~-~~g-----~~~~l~kp~ 102 (112)
T PF00072_consen 55 DGDGLELLEQIRQIN-PSIPIIVVTDEDDSDEVQEAL-RAG-----ADDYLSKPF 102 (112)
T ss_dssp SSBHHHHHHHHHHHT-TTSEEEEEESSTSHHHHHHHH-HTT-----ESEEEESSS
T ss_pred ccccccccccccccc-ccccEEEecCCCCHHHHHHHH-HCC-----CCEEEECCC
Confidence 467778888887655 567888888777766666666 566 344555443
No 463
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=33.18 E-value=1.8e+02 Score=24.07 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=32.9
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC---CCccEEEEeChHHH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD---TIFDWIIITSPEAG 114 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l---~~~d~IifTS~~av 114 (302)
..-+...|++.|+++... .+++ .|.+.+.+.+++. .++|.||.|-..++
T Consensus 24 ~~~l~~~L~~~G~~v~~~---~iv~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 24 GQYLVERLTEAGHRLADR---AIVK-DDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred HHHHHHHHHHCCCeEEEE---EEcC-CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 346777899999986553 3333 3456666666553 46999998877665
No 464
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.06 E-value=4e+02 Score=24.61 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-ChHHHHHHHHHH
Q 022128 48 NSNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAW 121 (302)
Q Consensus 48 l~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT-S~~av~~f~~~l 121 (302)
...++|.+...... ...+.+.+++.|++++....+..- ..|+......+ ...+.|.|++. .......|++++
T Consensus 138 ~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~D~~~~v~~i-~~~~pd~V~~~~~~~~~~~~~~~~ 215 (351)
T cd06334 138 LKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPG-PNDQKAQWLQI-RRSGPDYVILWGWGVMNPVAIKEA 215 (351)
T ss_pred CCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCC-cccHHHHHHHH-HHcCCCEEEEecccchHHHHHHHH
Q ss_pred HHcCCCCceEEEEChhhHHHHHHHhhccCCC
Q 022128 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCS 152 (302)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G 152 (302)
.+.+++..-+..-+-.....++.. |
T Consensus 216 ~~~G~~~~~~~~~~~~~~~~~~~~------g 240 (351)
T cd06334 216 KRVGLDDKFIGNWWSGDEEDVKPA------G 240 (351)
T ss_pred HHcCCCceEEEeeccCcHHHHHHh------h
No 465
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=33.04 E-value=70 Score=25.34 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=26.0
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
=||+...+.|+++|++. +..+.-+.++.++++.
T Consensus 73 ~iG~~a~~~l~~~GIkv-~~~~~~~V~e~i~~~~ 105 (121)
T COG1433 73 NIGPNAYNALKAAGIKV-YVAPGGTVEEAIKAFL 105 (121)
T ss_pred ccCHHHHHHHHHcCcEE-EecCCCCHHHHHHHHh
Confidence 38999999999999987 4555577777776654
No 466
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=33.03 E-value=1.8e+02 Score=25.50 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=85.8
Q ss_pred EEEeChHHHHHHHHHHHHcCCC---CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEE
Q 022128 106 IIITSPEAGSVFLEAWKEAGTP---NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVL 182 (302)
Q Consensus 106 IifTS~~av~~f~~~l~~~~~~---~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL 182 (302)
++-|...-.+.+.+.+.+++.. .++.-..|..+.++++..+ ...+...+.+.+..+..+... +.+-
T Consensus 21 lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~---------~~~~dp~s~ee~~~e~~~~~~--~~~~ 89 (222)
T KOG2914|consen 21 LVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFV---------KKLPDPVSREEFNKEEEEILD--RLFM 89 (222)
T ss_pred EEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHH---------hhcCCCCCHHHHHHHHHHHHH--Hhcc
Confidence 3445555566667777777642 4556699999999998872 122344455555444432211 1222
Q ss_pred EeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH----cCCCCEEEEECcHHHHHH-------HHHhhhcc
Q 022128 183 YPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSS-------WVNLISDT 251 (302)
Q Consensus 183 ~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~----~~~~d~ivftS~s~v~~~-------~~~~l~~~ 251 (302)
....-.|...|.+.|...|+.+- +-.+..... .+..... ...++.+++-....++ . |+..++..
T Consensus 90 ~~~~~PGa~kLv~~L~~~gip~a---lat~s~~~~-~~~k~~~~~~~~~~f~~~v~~d~~~v~-~gKP~Pdi~l~A~~~l 164 (222)
T KOG2914|consen 90 NSILMPGAEKLVNHLKNNGIPVA---LATSSTSAS-FELKISRHEDIFKNFSHVVLGDDPEVK-NGKPDPDIYLKAAKRL 164 (222)
T ss_pred ccccCCcHHHHHHHHHhCCCCee---EEecCCccc-HHHHHHHhhHHHHhcCCCeecCCcccc-CCCCCchHHHHHHHhc
Confidence 22233378889999999996552 222221111 1111111 1345555554433444 2 22222221
Q ss_pred cCCC-ceEEE--ECHHHHHHHHHcCCCeEEecC
Q 022128 252 EQWS-NSVAC--IGETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 252 ~~~~-~~i~~--IG~~Ta~~l~~~G~~~~~v~~ 281 (302)
.... -+.++ =.+..-+++...|++++.+++
T Consensus 165 ~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 165 GVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVAT 197 (222)
T ss_pred CCCCccceEEECCCHHHHHHHHhcCCeEEEecC
Confidence 1111 23333 367788899999999998887
No 467
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=33.02 E-value=3.5e+02 Score=24.04 Aligned_cols=118 Identities=17% Similarity=0.072 Sum_probs=66.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC-----CCceEEEEChhhH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-----PNVRIGVVGAGTA 139 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~-----~~~~i~aVG~~Ta 139 (302)
....+++.|.+..+.|+ ++.+ .+...+.+.+.. .++..+-+|-|.=...+ +.+.+... -.+..+..
T Consensus 19 hn~~~~~~g~~~~y~~~-~v~~-~~l~~~~~~~~~-~~~~G~nVT~P~K~~~~-~~~d~~~~~A~~~gavNti~~----- 89 (270)
T TIGR00507 19 HNAFFKQLGLEGPYIAF-LVPP-DDLEDALSGFFA-LGFKGANVTSPFKEEAF-QFLDEIDERAKLAGAVNTLKL----- 89 (270)
T ss_pred HHHHHHHcCCCcEEEEE-ecCH-HHHHHHHHHHHh-cCCCEEEECcCCHHHHH-HHhhhCCHHHHHhCCceEEEe-----
Confidence 44577889999888776 3322 122333333323 36899999999887754 44433210 01111111
Q ss_pred HHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
+- |- +....-+..+++..|.... .++++++++.+......+...|.+.|++|
T Consensus 90 ----~~------g~---l~g~NTD~~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v 143 (270)
T TIGR00507 90 ----ED------GK---LVGYNTDGIGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNV 143 (270)
T ss_pred ----eC------CE---EEEEcCCHHHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEE
Confidence 00 10 1223456777777775422 24678888887666777888888888654
No 468
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.92 E-value=3.3e+02 Score=23.68 Aligned_cols=187 Identities=16% Similarity=0.169 Sum_probs=101.0
Q ss_pred eEEEeCCCCChHHHHHHHHhCCCcEEEeceEE---------------eeeC-CCchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQ---------------HAQG-PDTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 52 ~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~---------------~~~~-~~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
+|+|.--..-...+++.|.+.|.+++.+-.-+ +... .+.+.|.++ .+.++|.+|..+.+-..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a--gi~~aD~vva~t~~d~~ 79 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA--GIDDADAVVAATGNDEV 79 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc--CCCcCCEEEEeeCCCHH
Confidence 44444443344556666666666655432111 1111 122333332 45789999998888444
Q ss_pred HH-HHHHH--HcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC------C--CCEEEEe
Q 022128 116 VF-LEAWK--EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------K--KCTVLYP 184 (302)
Q Consensus 116 ~f-~~~l~--~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~------~--~~~vL~~ 184 (302)
.+ +-.+. ..+.+.+-.=+-.+.-.+.+++. |+...+.|+...+..|+..+..... . ...++..
T Consensus 80 N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~ 153 (225)
T COG0569 80 NSVLALLALKEFGVPRVIARARNPEHEKVLEKL------GADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIEE 153 (225)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc------CCcEEECHHHHHHHHHHHHhcCCChheEEeecCCcceEEEE
Confidence 43 33332 24555565667777778888888 9877788887777777776653221 1 1222222
Q ss_pred CC----CcchhhHHHHHHhCCCeeEEEeeeeeec--CCCCcHHHHHHcCCCC-EEEEECcHHHHHHHHHhhhc
Q 022128 185 AS----AKASNEIEEGLSNRGFEVVRLNTYTTEP--VHHVDQTVLKQALSIP-VVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 185 rg----~~~~~~L~~~L~~~G~~v~~~~vY~~~~--~~~~~~~~~~~~~~~d-~ivftS~s~v~~~~~~~l~~ 250 (302)
.- .-....|.+.=-.....+..+.+|+... ........ +..-| .+++.++..++ .|.+.+..
T Consensus 154 ~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~---l~~gD~l~v~~~~~~i~-~~~~~~~~ 222 (225)
T COG0569 154 KVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTT---LEAGDRLIVIGAPEALR-EVEELLGG 222 (225)
T ss_pred EecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCE---ecCCCEEEEEEcHHHHH-HHHHHhcc
Confidence 21 2223333332212235667788888752 11111111 23334 67788888888 88777653
No 469
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=32.91 E-value=2.9e+02 Score=25.13 Aligned_cols=60 Identities=10% Similarity=0.084 Sum_probs=39.9
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR 241 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~ 241 (302)
+|++|.++.+......+...|++.|.+...+.... .. ..+....+ +++|+++...|...+
T Consensus 121 kGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv~~v~---~~--~~~~~~Al~~G~VDAa~~~~p~~~~ 182 (320)
T PRK11480 121 IGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVN---LQ--PPAIIAAWQRGDIDGAYVWAPAVNA 182 (320)
T ss_pred CCCEEecCCCCchHHHHHHHHHHcCCCHhheEEEE---CC--cHHHHHHHHcCCcCEEEEcchHHHH
Confidence 58999998777666678889999998776544322 22 12222222 689998888776544
No 470
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=32.89 E-value=4.5e+02 Score=25.16 Aligned_cols=188 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEE-EChhhH-
Q 022128 63 GKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV-VGAGTA- 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~a-VG~~Ta- 139 (302)
.++...|++.|+++. .+|-.++...+ .......++..++.+-...-..-++.+.+-+.+-. +|-...
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e~~----------~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~PiGi~~T~ 237 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTELP----------VIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPFGPDGTR 237 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcchhh----------hcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCcCHHHHH
Q ss_pred ---HHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 140 ---SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 140 ---~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
+.+.+.+ |.++.-.... ...+.+.|..... .|+|+.+..+..-.--+...|.+.|.++ +.+-....
T Consensus 238 ~~l~~la~~~-----g~~~~~~~~e--~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~--v~~~t~~~ 308 (407)
T TIGR01279 238 RFLEAIAAEF-----GIEVDKLSER--EAQAWRALEPHTQLLRGKKIFFFGDNLLELPLARFLKRCGMEV--VECGTPYI 308 (407)
T ss_pred HHHHHHHHHh-----CcCHHHHHHH--HHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHCCCEE--EEecCCCC
Q ss_pred CCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCC
Q 022128 215 VHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 275 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~ 275 (302)
.....+...+.+.. +..+.....-.+ +.+.+.+. +.-++.-|....-.+.+.|+.
T Consensus 309 ~~~~~~~~~~~l~~-~~~v~~~~d~~~--l~~~i~~~---~pDllig~~~~~~pl~r~GfP 363 (407)
T TIGR01279 309 HRRFHAAELALLEG-GVRIVEQPDFHR--QLQRIRAT---RPDLVVTGLGTANPLEAQGFT 363 (407)
T ss_pred ChHHHHHHHhhcCC-CCeEEeCCCHHH--HHHHHHhc---CCCEEecCccCCCcHhhCCcc
No 471
>PRK09492 treR trehalose repressor; Provisional
Probab=32.85 E-value=2e+02 Score=25.68 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=41.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-C--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP-D--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.-+.+.|+++|+++... ..... + ...+.+.+. .+.|+|+..+-..+..+.+.+.+.|++++.++..+..
T Consensus 196 ~Gf~~al~~~g~~~~~~----~~~~~~~~~~~~~~~~l~--~~~~ai~~~~D~~A~g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 196 QAYLAFCKQHKLTPVAA----LGGLSMQSGYELVAKVLT--PETTALVCATDTLALGASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred HHHHHHHHHcCCCceee----cCCCCchHHHHHHHHHhh--cCCCEEEEcCcHHHHHHHHHHHHcCCCceEEEeeCch
Confidence 34667788888765421 11111 0 122334442 3578888888777777788888888876666666553
No 472
>PRK09082 methionine aminotransferase; Validated
Probab=32.66 E-value=4.2e+02 Score=24.75 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=14.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+|++.... -..+...++..|.++..+++
T Consensus 114 ~gd~Vli~~p~--y~~~~~~~~~~g~~~~~~~~ 144 (386)
T PRK09082 114 PGDEVIVFDPS--YDSYAPAIELAGGRAVRVAL 144 (386)
T ss_pred CCCEEEEeCCC--chhhHHHHHHcCCEEEEEec
Confidence 34555555432 22234444555555555554
No 473
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=32.49 E-value=2e+02 Score=26.91 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=78.5
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCch-------HHHHHHhcCCCccEEEEeChH-HHHHHHH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-------RLSSVLNADTIFDWIIITSPE-AGSVFLE 119 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-------~l~~~l~~l~~~d~IifTS~~-av~~f~~ 119 (302)
..+++.+.+-|..-.+...+++.. |.+....+.-.+ .++..++....+..+|=+|.. +.++++-
T Consensus 15 ~p~~~L~gPGPsnl~~~V~~A~~~--------~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 15 VPVRTLLGPGPSNLSGRVQEAMSR--------PSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALV 86 (385)
T ss_pred CCcceeecCCCcCCCHHHHHhhcC--------CccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHH
Confidence 345667777777766666655532 333332211111 122233233445555555543 4455544
Q ss_pred HHHHcCCCCceEEEEC---hhhHHHHHHHhhccCCCCceeccCCC----ccHHHHHHhcccCCCCCCEEEEeCCCcchhh
Q 022128 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSK----ATGKILASELPKNGKKKCTVLYPASAKASNE 192 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG---~~Ta~~l~~~~~~~~~G~~~~~~p~~----~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~ 192 (302)
.+-+.| +++-++.+| ...+..++++ |.+++.++.+ .+-|.+.+.|.++. .+-|.+..|+.....
T Consensus 87 N~lePg-d~vLv~~~G~wg~ra~D~~~r~------ga~V~~v~~~~G~~~~le~i~~~lsqh~--p~~vfv~hgdsSTgV 157 (385)
T KOG2862|consen 87 NLLEPG-DNVLVVSTGTWGQRAADCARRY------GAEVDVVEADIGQAVPLEEITEKLSQHK--PKAVFVTHGDSSTGV 157 (385)
T ss_pred hhcCCC-CeEEEEEechHHHHHHHHHHhh------CceeeEEecCcccCccHHHHHHHHHhcC--CceEEEEecCccccc
Confidence 433322 344444444 4556777888 9999998653 45677877787753 456788888887776
Q ss_pred HHHHHHhCCCee
Q 022128 193 IEEGLSNRGFEV 204 (302)
Q Consensus 193 L~~~L~~~G~~v 204 (302)
+.+.+...|.-.
T Consensus 158 ~q~~~~~~g~lc 169 (385)
T KOG2862|consen 158 LQDLLAISGELC 169 (385)
T ss_pred cchHHHHHHHHh
Confidence 666555555333
No 474
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.48 E-value=3.6e+02 Score=24.00 Aligned_cols=192 Identities=14% Similarity=0.081 Sum_probs=98.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-HHHHHHHHHHHcCCC-
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTP- 127 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-av~~f~~~l~~~~~~- 127 (302)
.++||+.-...+..++++.|.+.|+.++..-.-+... ......-+.+-+- ..+.+.+.+.+.+++
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~-------------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~ 68 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGG-------------PADLPGPVRVGGFGGAEGLAAYLREEGIDL 68 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCC-------------cccCCceEEECCCCCHHHHHHHHHHCCCCE
Confidence 4679999888889999999998998665432222110 0111222223222 333333334444331
Q ss_pred ----CceEEEE-ChhhHHHHHHHhhccCCCCceec-c-C------C-----CccHHHHHHhcccCCCCCCEEEEeCCCcc
Q 022128 128 ----NVRIGVV-GAGTASIFEEVIQSSKCSLDVAF-S-P------S-----KATGKILASELPKNGKKKCTVLYPASAKA 189 (302)
Q Consensus 128 ----~~~i~aV-G~~Ta~~l~~~~~~~~~G~~~~~-~-p------~-----~~~~e~L~~~L~~~~~~~~~vL~~rg~~~ 189 (302)
.-++++. -+...++.++. |++-.- . | . -.+.+++++.+.+. ++|++..|.+.
T Consensus 69 VIDATHPfA~~is~~a~~ac~~~------~ipyiR~eR~~~~~~~~~~~~~v~s~~~a~~~l~~~----~~vllttGsk~ 138 (248)
T PRK08057 69 VIDATHPYAAQISANAAAACRAL------GIPYLRLERPSWLPQPGDRWIEVDDIEEAAEALAPF----RRVLLTTGRQP 138 (248)
T ss_pred EEECCCccHHHHHHHHHHHHHHh------CCcEEEEeCCCcCCCCCCCEEEECCHHHHHHHhhcc----CCEEEecCcch
Confidence 2333322 22222333443 543210 0 0 0 12566676666543 58999998887
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEE---C----
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACI---G---- 262 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~I---G---- 262 (302)
-..+...+ ....+|-++.+.... +--+..-++|...-|-+.+ .=..++++. ++.+++- |
T Consensus 139 l~~f~~~~-------~~~r~~~RvLP~~~s---~~g~~~~~iiam~gPfs~e-~n~aL~~~~---~i~~lVtK~SG~~g~ 204 (248)
T PRK08057 139 LAHFAAIL-------PEHRLLVRVLPPPEV---LLGLPRAEIIALRGPFSLE-LERALLRQH---RIDVVVTKNSGGAGT 204 (248)
T ss_pred HHHHhhcC-------CCCEEEEEECCCchh---cCCCChhhEEEeeCCCCHH-HHHHHHHHc---CCCEEEEcCCCchhh
Confidence 65554321 123566666544321 1112355778888877766 444445432 3333221 2
Q ss_pred -HHHHHHHHHcCCCeEEe
Q 022128 263 -ETTASAAKRLGLKNVYY 279 (302)
Q Consensus 263 -~~Ta~~l~~~G~~~~~v 279 (302)
++. ++++++|+..+++
T Consensus 205 ~eKi-~AA~~lgi~vivI 221 (248)
T PRK08057 205 EAKL-EAARELGIPVVMI 221 (248)
T ss_pred HHHH-HHHHHcCCeEEEE
Confidence 222 6678899997655
No 475
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=32.40 E-value=5.8e+02 Score=27.92 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCEEEEeCCCcch-----------hhHHHHHHhCCCeeEEEeeeeeecC------------CCCcHHHHHHc--CCCCE
Q 022128 177 KKCTVLYPASAKAS-----------NEIEEGLSNRGFEVVRLNTYTTEPV------------HHVDQTVLKQA--LSIPV 231 (302)
Q Consensus 177 ~~~~vL~~rg~~~~-----------~~L~~~L~~~G~~v~~~~vY~~~~~------------~~~~~~~~~~~--~~~d~ 231 (302)
..++||++.+...+ -.+...|++.|+++.-+........ +...+.+.+.. .++|.
T Consensus 553 ~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dg 632 (1066)
T PRK05294 553 DRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKG 632 (1066)
T ss_pred CCceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCE
Q ss_pred EEE-ECcHHHHHHHHHhhhcccCCCceEEEECHHHHHH----------HHHcCCCeEEecCCCChHHHHHHHHH
Q 022128 232 VAV-ASPSAVRSSWVNLISDTEQWSNSVACIGETTASA----------AKRLGLKNVYYPTHPGLEGWVDSILE 294 (302)
Q Consensus 232 ivf-tS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~----------l~~~G~~~~~v~~~~~~~~ll~~i~~ 294 (302)
|+. +.....- .+...+.+. +++++..++.+... |+++|+..--.-.-.+.+++.+.+.+
T Consensus 633 Vi~~~g~~~~~-~la~~le~~---Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~ 702 (1066)
T PRK05294 633 VIVQFGGQTPL-KLAKALEAA---GVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEE 702 (1066)
T ss_pred EEEEeCchhHH-HHHHHHHHC---CCceeCCCHHHHHHhCCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHh
No 476
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=32.27 E-value=1.9e+02 Score=26.49 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=13.8
Q ss_pred EEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 180 TVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 180 ~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+|++... .-..+...++..|+++..++
T Consensus 88 ~vl~~~p--~y~~~~~~~~~~g~~~~~~~ 114 (330)
T TIGR01140 88 RVLVLAP--TYSEYARAWRAAGHEVVELP 114 (330)
T ss_pred eEEEeCC--CcHHHHHHHHHcCCEEEEeC
Confidence 5555532 33345555666666554443
No 477
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=32.25 E-value=80 Score=24.23 Aligned_cols=58 Identities=17% Similarity=0.141 Sum_probs=42.7
Q ss_pred CEEEEECcHHHHHHHHHhhhcccC--CCceEEEECHHHHHHHHHcCCCeEEecCCCChHHH
Q 022128 230 PVVAVASPSAVRSSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGW 288 (302)
Q Consensus 230 d~ivftS~s~v~~~~~~~l~~~~~--~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~l 288 (302)
..+-|-+++.+. .+...++..+. ....++.+.|.+++.++..|+..+++....+.+..
T Consensus 52 s~v~~~dS~gl~-~L~~~~~~~~~~g~~~~l~~i~p~v~~~~~~~gl~~~~~~~~~~~~~~ 111 (117)
T COG1366 52 SGVDFMDSAGLG-VLVALLKSARLRGVELVLVGIQPEVARTLELTGLDKSFIITPTELEAA 111 (117)
T ss_pred CCCceechHHHH-HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCchhhcccccchHHHH
Confidence 456788889999 89888776432 24678889999999999999997654444444433
No 478
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=32.22 E-value=3.6e+02 Score=24.50 Aligned_cols=139 Identities=17% Similarity=0.093 Sum_probs=70.2
Q ss_pred CccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCcee--ccCC-CccHHHHHHhcccCCCC
Q 022128 102 IFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA--FSPS-KATGKILASELPKNGKK 177 (302)
Q Consensus 102 ~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~--~~p~-~~~~e~L~~~L~~~~~~ 177 (302)
+.+.|+=. +.....+....+.+ .+++++..|..+ ..+... .+.+-. ..|. ...+..+++.+....
T Consensus 66 ~v~~viG~~~s~~~~a~~~~~~~---~~ip~i~~~~~~-~~l~~~-----~~~~~~~r~~p~~~~~~~a~~~~~~~~~-- 134 (350)
T cd06366 66 PVVAIIGPQCSSVAEFVAEVANE---WNVPVLSFAATS-PSLSSR-----LQYPYFFRTTPSDSSQNPAIAALLKKFG-- 134 (350)
T ss_pred CceEEECCCcHHHHHHHHHHhhc---CCeeEEeccCCC-cccccc-----ccCCceEEcccchHhHHHHHHHHHHHCC--
Confidence 56666542 33333333443333 356777766544 233111 011111 2232 234455666665432
Q ss_pred CCEEEEeCC-----CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE-ECcHHHHHHHHHhhh
Q 022128 178 KCTVLYPAS-----AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLIS 249 (302)
Q Consensus 178 ~~~vL~~rg-----~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf-tS~s~v~~~~~~~l~ 249 (302)
-+++.++.. ....+.+.+.+++.|++|.....|.......+....+..+ .+.|+|++ .++..+. .|++.+.
T Consensus 135 ~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~~~~~-~~~~~a~ 213 (350)
T cd06366 135 WRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSPDLAR-RVFCEAY 213 (350)
T ss_pred CcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECChHHHH-HHHHHHH
Confidence 256666643 3335678889999999887666565431111222223333 46787665 4555566 6777776
Q ss_pred ccc
Q 022128 250 DTE 252 (302)
Q Consensus 250 ~~~ 252 (302)
+..
T Consensus 214 ~~g 216 (350)
T cd06366 214 KLG 216 (350)
T ss_pred HcC
Confidence 643
No 479
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=32.16 E-value=1.2e+02 Score=27.71 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=42.0
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
..|.||+|.++.......-+...|++.|.+...+ +++... .......+ .-++.|+++...|..
T Consensus 118 ~DLkGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv---~~v~~~-~~~~~~Al-~~G~VDAa~~~~p~~ 180 (320)
T PRK11480 118 EDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQV---EIVNLQ-PPAIIAAW-QRGDIDGAYVWAPAV 180 (320)
T ss_pred HHcCCCEEecCCCCchHHHHHHHHHHcCCCHhhe---EEEECC-cHHHHHHH-HcCCcCEEEEcchHH
Confidence 5788999999876554556778899999987543 333333 23344455 346789888777654
No 480
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=32.12 E-value=1.3e+02 Score=25.95 Aligned_cols=48 Identities=17% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhhHH
Q 022128 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTAS 140 (302)
Q Consensus 93 l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~Ta~ 140 (302)
+...+.+-...|+|+.++-.....+...+.+.++ +++.+++.+.....
T Consensus 163 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~ 213 (261)
T cd06272 163 AKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQM 213 (261)
T ss_pred HHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHH
Confidence 3344433344788888877766667777777775 47778888775443
No 481
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=32.07 E-value=1e+02 Score=27.76 Aligned_cols=59 Identities=8% Similarity=0.188 Sum_probs=32.2
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCcH---HHHHHc--CCCCEEEEECcHHHHHHHHHhhhc
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
..-+.+.|++.|... +-..|+......+.. ...+.+ .++|.|+-+...++. .+.+.+..
T Consensus 17 ~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~-~~~~~~~~ 80 (294)
T PF04392_consen 17 VRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQ-ALAKHLKD 80 (294)
T ss_dssp HHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHH-HHHHH-SS
T ss_pred HHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHH-HHHHhcCC
Confidence 345788899998876 223333333333332 233333 579988888888888 77766554
No 482
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.05 E-value=1.7e+02 Score=25.14 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=27.2
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChh
Q 022128 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 93 l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~ 137 (302)
+.+.++.-.+.|+|+.++..-+..+.+.+.+.++ +++.+++.+..
T Consensus 167 ~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~~ 214 (265)
T cd06290 167 VEELLQRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDDL 214 (265)
T ss_pred HHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeecCc
Confidence 4444433334678777777666666777777664 35666666644
No 483
>PRK05939 hypothetical protein; Provisional
Probab=31.97 E-value=2.9e+02 Score=26.32 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=46.0
Q ss_pred ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeee
Q 022128 135 GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 135 G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
|.-|.+.|++.+.+=++|-.....+.. ...+...+.....+|.+|++....-+ ...+.+.++..|+++..+++.
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG--~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~~--- 119 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATG--MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDAT--- 119 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCH--HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECCC---
Confidence 555555555544332223333233222 23333333323335678888766433 223445677788877666541
Q ss_pred cCCCCcHHHHHHc-CCCCEEEEECcH
Q 022128 214 PVHHVDQTVLKQA-LSIPVVAVASPS 238 (302)
Q Consensus 214 ~~~~~~~~~~~~~-~~~d~ivftS~s 238 (302)
+.+++.+.+ .+..+|++.+++
T Consensus 120 ----d~e~l~~~l~~~tklV~vesp~ 141 (397)
T PRK05939 120 ----DVQNVAAAIRPNTRMVFVETIA 141 (397)
T ss_pred ----CHHHHHHhCCCCCeEEEEECCC
Confidence 223333223 345667776643
No 484
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=31.96 E-value=1.2e+02 Score=28.60 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=40.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
|.+|+++-|. =..+....+..|+++..+|.-. ...|.+.+...+. ++.+.|++.+||-
T Consensus 99 gd~vl~~~Pt--f~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~--~~~~lv~i~nPNN 156 (356)
T COG0079 99 GDTVLIPEPT--FSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIR--DKTKLVFLCNPNN 156 (356)
T ss_pred CCEEEEcCCC--hHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhh--cCCCEEEEeCCCC
Confidence 4578888875 3566677778899999999877 2234444544442 2689999998874
No 485
>PRK06490 glutamine amidotransferase; Provisional
Probab=31.94 E-value=3.6e+02 Score=23.76 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=32.6
Q ss_pred CCEEEEeCCC--cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEE
Q 022128 178 KCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (302)
Q Consensus 178 ~~~vL~~rg~--~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivft 235 (302)
..+|+++.-. ..-..+.+.|++.|.++..+..|.-.+.+. .+.++|.++++
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~-------~l~~~dgvii~ 59 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD-------TLEDHAGAVIF 59 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC-------cccccCEEEEE
Confidence 4678887433 445679999999998887666654332221 13467876666
No 486
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=31.92 E-value=4.2e+02 Score=24.54 Aligned_cols=167 Identities=10% Similarity=0.126 Sum_probs=84.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCce
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~ 130 (302)
++|+++.+-. +...+.|++. +++...+. ....+.+++.+ .+.++|.++..+..--+.+++ . .+++|
T Consensus 3 ~~vl~~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~~~~---~~~~ad~li~~~~~~~~~~l~---~--~p~Lk 68 (323)
T PRK15409 3 PSVILYKALP--DDLLQRLEEH-FTVTQVAN---LSPETVEQHAA---AFAEAEGLLGSGEKVDAALLE---K--MPKLR 68 (323)
T ss_pred ceEEEeCCCC--HHHHHHHHhc-CcEEEcCC---CCCCCHHHHHH---HhcCCeEEEEcCCCCCHHHHh---h--CCCCe
Confidence 5799998753 4556677654 45443221 10112223333 457788877432211122222 1 24566
Q ss_pred EE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh--------cc------------cC-----------
Q 022128 131 IG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------LP------------KN----------- 174 (302)
Q Consensus 131 i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~--------L~------------~~----------- 174 (302)
++ +.|.++ .+++.+. |+.+.-.|. .+++.+++. .. .|
T Consensus 69 ~I~~~g~G~d~id~~~~~~~------gI~V~n~~~-~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~ 141 (323)
T PRK15409 69 AASTISVGYDNFDVDALTAR------KILLMHTPT-VLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGT 141 (323)
T ss_pred EEEECceecccccHHHHHHC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccC
Confidence 54 444444 3566666 998866654 222222221 00 00
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHH-hCCCeeEEEeeeeeecCCCC-------cHHHHHHcCCCCEEEEECcHHHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~-~~G~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
...|+++.++.-..-...+.+.|+ ..|.+|. .|.+...+.. ...+-+.+...|+|++.-|.+-+
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~---~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~ 213 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL---YNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDE 213 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE---EECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChH
Confidence 115678888866555666788887 7777664 3433221110 00111223578988888776654
No 487
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=31.87 E-value=3.4e+02 Score=23.50 Aligned_cols=24 Identities=21% Similarity=0.016 Sum_probs=13.7
Q ss_pred ccEEEEeChHHHHHHHHHHHHcCC
Q 022128 103 FDWIIITSPEAGSVFLEAWKEAGT 126 (302)
Q Consensus 103 ~d~IifTS~~av~~f~~~l~~~~~ 126 (302)
...|..||.|...++.......++
T Consensus 51 ~~vv~~ssGN~g~alA~~a~~~g~ 74 (244)
T cd00640 51 GVIIESTGGNTGIALAAAAARLGL 74 (244)
T ss_pred CEEEEeCCcHHHHHHHHHHHHcCC
Confidence 345555666777666655555443
No 488
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=31.85 E-value=4.3e+02 Score=24.65 Aligned_cols=168 Identities=11% Similarity=0.062 Sum_probs=84.0
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH----------HHHHHHhhccCCCCce-----eccCCC---c
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA----------SIFEEVIQSSKCSLDV-----AFSPSK---A 162 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta----------~~l~~~~~~~~~G~~~-----~~~p~~---~ 162 (302)
...|.++..|....+.+. +.+.+.-++.++|..+. ..+++.+ |+.. -+++.. .
T Consensus 149 ~~~d~~~~~s~~~~~~l~----~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~-----gl~~~~~~il~~Gg~~g~~ 219 (382)
T PLN02605 149 KGVTRCFCPSEEVAKRAL----KRGLEPSQIRVYGLPIRPSFARAVRPKDELRREL-----GMDEDLPAVLLMGGGEGMG 219 (382)
T ss_pred CCCCEEEECCHHHHHHHH----HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHc-----CCCCCCcEEEEECCCcccc
Confidence 568899988877655443 44555445666664442 2233333 5542 223221 1
Q ss_pred cHHHHHHhcccCC------CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 163 TGKILASELPKNG------KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 163 ~~e~L~~~L~~~~------~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
..+.+++.+.... .++-++++++|.+. .+.+.|++..... .+.+.- ..+ . +.+.+...|+++..|
T Consensus 220 ~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~--~~~~~L~~~~~~~-~v~~~G--~~~-~---~~~l~~aaDv~V~~~ 290 (382)
T PLN02605 220 PLEETARALGDSLYDKNLGKPIGQVVVICGRNK--KLQSKLESRDWKI-PVKVRG--FVT-N---MEEWMGACDCIITKA 290 (382)
T ss_pred cHHHHHHHHHHhhccccccCCCceEEEEECCCH--HHHHHHHhhcccC-CeEEEe--ccc-c---HHHHHHhCCEEEECC
Confidence 2344555554321 13346777887652 4455565432110 111111 111 1 222234678877644
Q ss_pred cHHHHHHHHHhhhcccCCCceEEEEC------HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 237 PSAVRSSWVNLISDTEQWSNSVACIG------ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 237 ~s~v~~~~~~~l~~~~~~~~~i~~IG------~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
.. - ...+.+. .++++++.. ...+..+.+.|.-. . + .+.+++.++|.+.+.
T Consensus 291 g~--~-ti~EAma----~g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~-~--~~~~~la~~i~~ll~ 346 (382)
T PLN02605 291 GP--G-TIAEALI----RGLPIILNGYIPGQEEGNVPYVVDNGFGA-F-S--ESPKEIARIVAEWFG 346 (382)
T ss_pred Cc--c-hHHHHHH----cCCCEEEecCCCccchhhHHHHHhCCcee-e-c--CCHHHHHHHHHHHHc
Confidence 31 1 2233332 256777765 24456677777643 2 2 578888888887764
No 489
>PRK05967 cystathionine beta-lyase; Provisional
Probab=31.85 E-value=4.5e+02 Score=25.12 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=51.5
Q ss_pred EChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchh--hHHHHHHhCCCeeEEEeeee
Q 022128 134 VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASN--EIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 134 VG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~--~L~~~L~~~G~~v~~~~vY~ 211 (302)
.|.-|.+.|++.+..-++|-...+.+. ..+++...+.....+|.+|+++...-+.. .+.+.++..|++|..+..
T Consensus 61 ~gnPt~~~Le~~la~le~~~~~v~~sS--G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~vd~-- 136 (395)
T PRK05967 61 RGTPTTDALCKAIDALEGSAGTILVPS--GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYYDP-- 136 (395)
T ss_pred CCChHHHHHHHHHHHHhCCCCEEEECc--HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEeCC--
Confidence 455666666665532222333333333 23444434434445778899886654432 344677888887766531
Q ss_pred eecCCCCcHHHHHHc-CCCCEEEEECcH
Q 022128 212 TEPVHHVDQTVLKQA-LSIPVVAVASPS 238 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~-~~~d~ivftS~s 238 (302)
. ..+.+.+.+ .+...|++.||+
T Consensus 137 ----~-~~e~l~~al~~~TklV~lesPs 159 (395)
T PRK05967 137 ----E-IGAGIAKLMRPNTKVVHTEAPG 159 (395)
T ss_pred ----C-CHHHHHHhcCcCceEEEEECCC
Confidence 1 112232223 356789999876
No 490
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=31.82 E-value=2.8e+02 Score=24.70 Aligned_cols=123 Identities=11% Similarity=0.083 Sum_probs=59.4
Q ss_pred cHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHH
Q 022128 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRS 242 (302)
Q Consensus 163 ~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~ 242 (302)
..+.+++.+.... +-++++.......+.+.+..++.+..- .+..+... + .+++.+-....|+.+++|....+
T Consensus 205 ~~~~li~a~~~l~--~~~l~i~G~g~~~~~~~~~~~~~~~~~-~V~~~g~v--~--~~~~~~~~~~ad~~i~ps~~~~e- 276 (357)
T cd03795 205 GLDVLLEAAAALP--DAPLVIVGEGPLEAELEALAAALGLLD-RVRFLGRL--D--DEEKAALLAACDVFVFPSVERSE- 276 (357)
T ss_pred CHHHHHHHHHhcc--CcEEEEEeCChhHHHHHHHHHhcCCcc-eEEEcCCC--C--HHHHHHHHHhCCEEEeCCccccc-
Confidence 3455666665443 345555544333445555554444221 12222211 1 12223333568999998854322
Q ss_pred H----HHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 243 S----WVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 243 ~----~~~~l~~~~~~~~~i~~IG-~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
. +++.+. .++++++-. +...+.+.+.|-.-. +.+.-+.++++++|.+.+..
T Consensus 277 ~~g~~~~Ea~~----~g~Pvi~~~~~~~~~~i~~~~~~g~-~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 277 AFGIVLLEAMA----FGKPVISTEIGTGGSYVNLHGVTGL-VVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred ccchHHHHHHH----cCCCEEecCCCCchhHHhhCCCceE-EeCCCCHHHHHHHHHHHHHC
Confidence 2 223322 256666643 222334443233332 33445899999999888754
No 491
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=31.62 E-value=2.2e+02 Score=21.18 Aligned_cols=64 Identities=19% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG~~T 138 (302)
.++.+.++++|.++ ++... +..++.. ...++| +|+++|.-...+ +.+++ ....++++..|.+..
T Consensus 17 ~ki~~~~~~~~~~~------~v~~~-~~~~~~~---~~~~~D-iil~~Pqv~~~~-~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 17 KKMKKAAEKRGIDA------EIEAV-PESELEE---YIDDAD-VVLLGPQVRYML-DEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHHHCCCce------EEEEe-cHHHHHH---hcCCCC-EEEEChhHHHHH-HHHHHHhccCCCcEEEcChHh
Confidence 46677788889872 33322 1223332 346788 667777765544 44443 333577788877643
No 492
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=31.60 E-value=79 Score=25.44 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=34.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeChHHH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG 114 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IifTS~~av 114 (302)
..-+.+.|++.|+++....... .|.+.+.+.++.. .++|.||.|...++
T Consensus 29 ~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 29 GPLLAALLEEAGFNVSRLGIVP----DDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred HHHHHHHHHHCCCeEEEEeecC----CCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 4568888999998877643322 2345666666543 57999999987776
No 493
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.55 E-value=1.2e+02 Score=26.30 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhh
Q 022128 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 92 ~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~T 138 (302)
.+.+.+..-...++|+.++-..+..+.+.+.+.++ +++.+++.+...
T Consensus 162 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~~ 211 (263)
T cd06280 162 ALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDNDP 211 (263)
T ss_pred HHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCChh
Confidence 34444433235677777777766667777777664 356666666543
No 494
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=31.52 E-value=2.1e+02 Score=24.81 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEECh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~ 136 (302)
.+.+.++++|.++............+ .+.+.+.+..-...|+|+.+|-..+..+.+.+.+.++ +++.+++.+.
T Consensus 141 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~ 220 (273)
T cd01541 141 GFIKAYREHGIPFNPSNVITYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDD 220 (273)
T ss_pred HHHHHHHHcCCCCChHHEEeccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCC
Confidence 35667777776543222211111111 1234444433346899998888888878888888775 3667777755
Q ss_pred h
Q 022128 137 G 137 (302)
Q Consensus 137 ~ 137 (302)
.
T Consensus 221 ~ 221 (273)
T cd01541 221 S 221 (273)
T ss_pred c
Confidence 4
No 495
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.43 E-value=1.9e+02 Score=28.43 Aligned_cols=97 Identities=11% Similarity=0.083 Sum_probs=57.3
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhc----CCCccEEEEeChHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNA----DTIFDWIIITSPEAGSVFLEAW 121 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~----l~~~d~IifTS~~av~~f~~~l 121 (302)
-+.||++.++-.....-.+.+.|.+.|.+|+.+-. .. ...++ ....+.+.. ....+.++...++-.+ +.+.+
T Consensus 311 ~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt-~~-~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~e-l~~~i 387 (457)
T CHL00073 311 LVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGI-PY-MDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYN-QIQRI 387 (457)
T ss_pred HHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEe-CC-CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHH-HHHHH
Confidence 56899999888877888899999999999998811 11 11121 111222322 1223456666666444 45555
Q ss_pred HHcCCCCceEEEEChhhHHHHHHHhhccCCCCce
Q 022128 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (302)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~ 155 (302)
.+.+ ..++.-|-..+.-|.+. |+..
T Consensus 388 ~~~~---pDLlIgG~~~~~Pl~~~------G~p~ 412 (457)
T CHL00073 388 RELQ---PDLAITGMAHANPLEAR------GINT 412 (457)
T ss_pred hhCC---CCEEEccccccCchhhc------CCcc
Confidence 5432 33444444566666776 7654
No 496
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.38 E-value=2.5e+02 Score=25.86 Aligned_cols=126 Identities=14% Similarity=0.157 Sum_probs=67.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeChH--HHH--HHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~l~~~d~IifTS~~--av~--~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+..++.|+++..+-+-+ ....+++.+.+. .....|+|+.--|- .+. .+++.+.. ...+++.-+-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~---~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 128 (297)
T PRK14167 52 KQRDCEEVGIEAIDVEIDP---DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGR 128 (297)
T ss_pred HHHHHHHcCCEEEEEECCC---CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhHH
Confidence 3455677798887543322 112334444443 44668899988772 221 12222211 1112222221111
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC--CCCCEEEEe-CCCcchhhHHHHHHhC----CCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~--~~~~~vL~~-rg~~~~~~L~~~L~~~----G~~v~~~~ 208 (302)
|- . |- ..+.| -|+.+.++.|..+. ..|++++++ |++.-..-|...|.++ |+.|+.+.
T Consensus 129 -----l~-~------g~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (297)
T PRK14167 129 -----LV-A------GD-ARFKP--CTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH 192 (297)
T ss_pred -----Hh-C------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC
Confidence 11 1 32 22444 36788777776543 268888877 6777777788888877 78776653
No 497
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=31.32 E-value=5e+02 Score=25.30 Aligned_cols=210 Identities=10% Similarity=-0.013 Sum_probs=102.4
Q ss_pred CChHHHHHHHHhCCCcEEEeceEEeee----------CCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCC
Q 022128 60 GKNGKLIKALAKHRIDCLELPLIQHAQ----------GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPN 128 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~----------~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~ 128 (302)
.+-.++.+.|++.|+++..+|-+..-. ......+++ +++..+...-+..++.....+.+.+++ .+.+-
T Consensus 175 ~D~~ei~~lL~~~Gl~v~~~~d~~~~d~~~~~~~~~~~~g~~~~~~-i~~~~~A~~niv~~~~~~~~~A~~Le~~fGiPy 253 (454)
T cd01973 175 GDVVELKHYLSEMDVEANILMDTEDFDSPMLPDKSAVTHGNTTIED-IADSANAIATIALARYEGGKAAEFLQKKFDVPA 253 (454)
T ss_pred HHHHHHHHHHHHcCCCEEEeeccccccCCCCCcccccCCCCCCHHH-HHHhhhCcEEEEEChhhhHHHHHHHHHHHCCCe
Confidence 456889999999999999887553110 000112222 234555555555565444455566654 33332
Q ss_pred ceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCccH--HHHHHhcccC---CCCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 129 ~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~--e~L~~~L~~~---~~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
+.+ .-+| ..|.+.|++.... -|..+ |+..-. +.+.+.+.+. ...|+|+.+..+..----+.+.|.+.|
T Consensus 254 i~~~~P~G~~~T~~~l~~ia~~--~g~~~---~e~i~~er~~~~~~~~~~~~~~l~Gkrv~i~g~~~~~~~l~~fl~elG 328 (454)
T cd01973 254 ILGPTPIGIKNTDAFLQNIKEL--TGKPI---PESLVRERGIAIDALADLAHMFFANKKVAIFGHPDLVIGLAEFCLEVE 328 (454)
T ss_pred eccCCCcChHHHHHHHHHHHHH--HCCCC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHHHHHHHHHHCC
Confidence 211 2344 3466666554110 04322 222111 1133333321 125789887754444455677777899
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
..+..+.+....+.. .....++.+ ...+..++..+...+ +.+.+.+.. ....++.-|..-...++++|+..+.
T Consensus 329 m~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~vi~~~d~~e--~~~~i~~~~-~~~dliig~s~~~~~A~~~gip~~~ 404 (454)
T cd01973 329 MKPVLLLLGDDNSKY-KKDPRIKALKEKADYDMEIVTNADLWE--LEKRIKNKG-LELDLILGHSKGRYIAIDNNIPMVR 404 (454)
T ss_pred CeEEEEEECCCCccc-chhHHHHHHHhhcCCCceEEECCCHHH--HHHHHHhcC-CCCCEEEECCccHHHHHHcCCCEEE
Confidence 988765554432222 112222222 122333344444333 334443311 0234555555666777788887543
Q ss_pred e
Q 022128 279 Y 279 (302)
Q Consensus 279 v 279 (302)
+
T Consensus 405 ~ 405 (454)
T cd01973 405 V 405 (454)
T ss_pred e
Confidence 3
No 498
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=31.23 E-value=2.4e+02 Score=25.54 Aligned_cols=29 Identities=24% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCC--CcEEEe
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHR--IDCLEL 79 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G--~~v~~~ 79 (302)
+++||||-..... .+.+.|++.| ++++.+
T Consensus 1 ~~~vLv~g~~~~~-~~~~~l~~~~~g~~vi~~ 31 (326)
T PRK12767 1 MMNILVTSAGRRV-QLVKALKKSLLKGRVIGA 31 (326)
T ss_pred CceEEEecCCccH-HHHHHHHHhccCCEEEEE
Confidence 4789999876555 7889998884 888766
No 499
>PRK08912 hypothetical protein; Provisional
Probab=31.22 E-value=1.3e+02 Score=28.23 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=38.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
.|.+|++..|.- ..+...++..|++++.+|+-......+.+.+.+.+. .+.+.|++++|
T Consensus 110 ~gd~Vlv~~p~y--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p 168 (387)
T PRK08912 110 PGDEVVLFQPLY--DAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS--PRTKAVLLNNP 168 (387)
T ss_pred CCCEEEEeCCCc--hhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC--ccceEEEEeCC
Confidence 477899998864 456677888999999988732111124456666552 35678887764
No 500
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=31.16 E-value=3.8e+02 Score=24.20 Aligned_cols=72 Identities=7% Similarity=0.085 Sum_probs=37.2
Q ss_pred HHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 222 VLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 222 ~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
+.+.+...|+.+++|.+..-...++.+. .++++++.... ..+.+.+ |..-..+ +..+.+++.++|.+.++..
T Consensus 255 ~~~~~~~ad~~v~ps~e~~g~~~~Eama----~G~Pvi~~~~~~~~e~i~~-~~~G~~~-~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 255 LRDLYARARAFLFPAEEDFGIVPVEAMA----SGTPVIAYGKGGALETVID-GVTGILF-EEQTVESLAAAVERFEKNE 327 (351)
T ss_pred HHHHHHhCCEEEECCcCCCCchHHHHHH----cCCCEEEeCCCCCcceeeC-CCCEEEe-CCCCHHHHHHHHHHHHhCc
Confidence 3333467888888876222101122221 25677765322 2222322 3233333 3457888999998877643
Done!