Query 022128
Match_columns 302
No_of_seqs 205 out of 1415
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 14:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022128.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022128hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 1.1E-47 3.7E-52 343.3 25.6 243 46-295 2-253 (254)
2 3re1_A Uroporphyrinogen-III sy 100.0 6.1E-48 2.1E-52 347.9 18.5 245 46-297 10-263 (269)
3 3d8t_A Uroporphyrinogen-III sy 100.0 5.4E-47 1.8E-51 344.6 22.5 251 26-298 17-283 (286)
4 1jr2_A Uroporphyrinogen-III sy 100.0 5.5E-46 1.9E-50 337.9 24.0 251 42-301 13-285 (286)
5 3mw8_A Uroporphyrinogen-III sy 100.0 8.1E-46 2.8E-50 328.4 23.2 233 50-293 1-239 (240)
6 1wcw_A Uroporphyrinogen III sy 100.0 4E-45 1.4E-49 327.5 24.0 239 46-298 4-258 (261)
7 3p9z_A Uroporphyrinogen III co 100.0 1.5E-37 5.2E-42 273.7 18.4 202 75-295 17-224 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 4.1E-16 1.4E-20 136.7 11.6 117 48-174 108-224 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.7 2.8E-16 9.4E-21 142.1 10.4 122 48-175 155-280 (286)
10 3re1_A Uroporphyrinogen-III sy 99.6 3.3E-16 1.1E-20 140.5 8.9 123 47-176 138-263 (269)
11 4es6_A Uroporphyrinogen-III sy 99.6 1.2E-15 4E-20 135.6 10.3 120 47-173 130-252 (254)
12 1wcw_A Uroporphyrinogen III sy 99.6 8E-16 2.7E-20 137.0 7.2 118 50-174 130-255 (261)
13 3d8t_A Uroporphyrinogen-III sy 99.6 1.9E-15 6.5E-20 136.6 9.5 118 50-174 155-280 (286)
14 3mw8_A Uroporphyrinogen-III sy 99.6 2.7E-15 9.4E-20 132.0 9.4 113 178-293 1-114 (240)
15 3gbv_A Putative LACI-family tr 96.6 0.043 1.5E-06 47.9 13.6 194 64-275 30-246 (304)
16 3gv0_A Transcriptional regulat 96.1 0.015 5E-07 51.0 7.9 190 64-275 31-237 (288)
17 3egc_A Putative ribose operon 95.9 0.037 1.3E-06 48.3 9.5 182 63-265 28-225 (291)
18 3l49_A ABC sugar (ribose) tran 95.8 0.15 5.1E-06 44.2 13.2 191 50-264 5-226 (291)
19 3g1w_A Sugar ABC transporter; 95.8 0.14 4.8E-06 44.7 12.7 204 50-271 4-232 (305)
20 3h75_A Periplasmic sugar-bindi 95.7 0.22 7.5E-06 44.6 14.2 220 50-279 3-260 (350)
21 3g85_A Transcriptional regulat 95.5 0.069 2.4E-06 46.4 9.7 182 63-265 32-229 (289)
22 3k4h_A Putative transcriptiona 95.4 0.038 1.3E-06 48.1 7.8 181 64-265 34-231 (292)
23 3qk7_A Transcriptional regulat 95.4 0.054 1.9E-06 47.4 8.6 181 64-265 31-226 (294)
24 2q5c_A NTRC family transcripti 95.3 0.8 2.7E-05 38.2 15.1 132 127-297 50-182 (196)
25 3d8u_A PURR transcriptional re 95.1 0.052 1.8E-06 46.7 7.5 177 64-265 24-220 (275)
26 2yxb_A Coenzyme B12-dependent 95.0 0.34 1.2E-05 39.1 11.7 113 177-297 17-144 (161)
27 2pju_A Propionate catabolism o 95.0 0.51 1.8E-05 40.4 13.2 129 129-297 64-193 (225)
28 3tb6_A Arabinose metabolism tr 94.8 0.19 6.3E-06 43.6 10.2 194 51-265 16-240 (298)
29 3kke_A LACI family transcripti 94.7 0.16 5.4E-06 44.6 9.7 179 63-265 35-236 (303)
30 2fep_A Catabolite control prot 94.7 0.22 7.4E-06 43.4 10.4 180 64-265 37-234 (289)
31 2fvy_A D-galactose-binding per 94.3 1.7 5.7E-05 37.6 15.4 185 64-264 23-238 (309)
32 3dbi_A Sugar-binding transcrip 94.3 0.16 5.3E-06 45.4 8.7 179 64-264 84-280 (338)
33 3gyb_A Transcriptional regulat 94.2 0.13 4.6E-06 44.2 7.9 175 64-265 26-215 (280)
34 3k9c_A Transcriptional regulat 94.1 0.13 4.5E-06 44.8 7.7 176 64-264 32-223 (289)
35 2rir_A Dipicolinate synthase, 94.1 0.15 5.2E-06 45.3 8.2 211 47-277 4-265 (300)
36 3brq_A HTH-type transcriptiona 94.1 0.27 9.4E-06 42.4 9.7 181 64-265 42-239 (296)
37 3rot_A ABC sugar transporter, 94.1 0.15 5E-06 44.6 7.9 204 50-274 3-238 (297)
38 3c3k_A Alanine racemase; struc 93.9 0.8 2.7E-05 39.5 12.5 175 64-264 29-222 (285)
39 3o74_A Fructose transport syst 93.9 0.16 5.4E-06 43.4 7.7 178 63-264 22-217 (272)
40 1dbq_A Purine repressor; trans 93.9 0.13 4.4E-06 44.5 7.1 178 65-265 29-226 (289)
41 2vk2_A YTFQ, ABC transporter p 93.8 0.91 3.1E-05 39.6 12.8 213 65-297 24-264 (306)
42 3bbl_A Regulatory protein of L 93.8 0.36 1.2E-05 41.8 9.9 182 64-265 29-227 (287)
43 2rgy_A Transcriptional regulat 93.6 0.32 1.1E-05 42.2 9.3 192 51-264 9-227 (290)
44 3e3m_A Transcriptional regulat 93.6 0.26 9E-06 44.3 8.9 177 64-265 91-289 (355)
45 3jy6_A Transcriptional regulat 93.5 0.46 1.6E-05 40.8 10.0 175 64-264 28-219 (276)
46 3huu_A Transcription regulator 93.4 0.18 6.1E-06 44.2 7.2 177 64-265 48-241 (305)
47 3d4o_A Dipicolinate synthase s 93.3 0.5 1.7E-05 41.8 10.1 207 48-276 3-262 (293)
48 3hcw_A Maltose operon transcri 93.1 0.41 1.4E-05 41.7 9.2 178 63-265 32-231 (295)
49 2o20_A Catabolite control prot 92.9 0.52 1.8E-05 41.8 9.6 175 65-264 85-277 (332)
50 3ksm_A ABC-type sugar transpor 92.7 0.42 1.4E-05 40.8 8.5 181 63-265 20-224 (276)
51 3e61_A Putative transcriptiona 92.7 1.4 4.8E-05 37.6 11.9 174 63-264 28-215 (277)
52 3clk_A Transcription regulator 92.5 0.58 2E-05 40.4 9.3 179 64-266 29-225 (290)
53 3l6u_A ABC-type sugar transpor 92.4 1.4 4.8E-05 37.8 11.6 178 63-264 28-230 (293)
54 3jvd_A Transcriptional regulat 91.9 0.37 1.3E-05 43.0 7.3 187 50-265 64-270 (333)
55 1ccw_A Protein (glutamate muta 91.9 0.74 2.5E-05 36.0 8.2 101 189-297 19-135 (137)
56 2hsg_A Glucose-resistance amyl 91.7 0.36 1.2E-05 42.8 7.1 179 64-264 81-277 (332)
57 2h0a_A TTHA0807, transcription 91.7 0.74 2.5E-05 39.3 8.8 181 64-266 20-220 (276)
58 3hs3_A Ribose operon repressor 91.6 0.24 8.1E-06 42.8 5.6 168 63-264 30-216 (277)
59 3kjx_A Transcriptional regulat 91.5 0.13 4.6E-06 46.0 4.0 179 64-264 89-285 (344)
60 1qpz_A PURA, protein (purine n 91.4 0.42 1.4E-05 42.6 7.1 177 65-264 80-276 (340)
61 3k5p_A D-3-phosphoglycerate de 90.9 2.4 8.4E-05 39.5 11.9 172 46-239 11-219 (416)
62 3cs3_A Sugar-binding transcrip 90.8 1 3.4E-05 38.6 8.8 172 64-265 29-216 (277)
63 1ccw_A Protein (glutamate muta 90.8 2.4 8.1E-05 33.0 10.2 110 50-172 3-131 (137)
64 1mio_B Nitrogenase molybdenum 90.7 7.9 0.00027 36.3 15.6 201 61-278 183-408 (458)
65 3fwz_A Inner membrane protein 90.6 1.9 6.6E-05 33.2 9.5 63 227-291 70-136 (140)
66 2dri_A D-ribose-binding protei 90.5 1.3 4.5E-05 37.8 9.2 176 65-264 23-217 (271)
67 2yxb_A Coenzyme B12-dependent 90.3 2.1 7.1E-05 34.4 9.7 100 49-160 17-129 (161)
68 3lft_A Uncharacterized protein 89.9 3.8 0.00013 35.4 11.9 186 63-264 21-222 (295)
69 2h3h_A Sugar ABC transporter, 89.7 3.8 0.00013 35.6 11.8 178 65-265 22-219 (313)
70 3miz_A Putative transcriptiona 89.6 0.4 1.4E-05 41.8 5.2 179 64-264 35-235 (301)
71 4dik_A Flavoprotein; TM0755, e 89.4 2.2 7.5E-05 39.7 10.4 84 190-276 283-382 (410)
72 2qu7_A Putative transcriptiona 89.3 0.23 7.9E-06 43.0 3.4 177 65-266 29-227 (288)
73 2x7x_A Sensor protein; transfe 89.0 4.4 0.00015 35.5 11.8 175 66-264 28-224 (325)
74 3m9w_A D-xylose-binding peripl 89.0 1.6 5.4E-05 38.1 8.7 179 63-263 22-223 (313)
75 2ioy_A Periplasmic sugar-bindi 88.8 2.7 9.4E-05 35.9 10.1 175 65-263 23-217 (283)
76 2iks_A DNA-binding transcripti 88.8 2.5 8.4E-05 36.4 9.8 175 64-265 41-236 (293)
77 3c85_A Putative glutathione-re 88.6 3.4 0.00011 33.2 9.9 69 227-296 104-175 (183)
78 1byk_A Protein (trehalose oper 87.8 1.7 5.9E-05 36.5 7.9 173 64-268 23-211 (255)
79 4gx0_A TRKA domain protein; me 87.7 7.8 0.00027 37.2 13.4 115 49-172 126-257 (565)
80 2qh8_A Uncharacterized protein 87.7 7.5 0.00026 33.6 12.3 187 64-264 28-229 (302)
81 3aek_A Light-independent proto 87.5 3 0.0001 39.1 10.0 192 63-276 198-398 (437)
82 4fe7_A Xylose operon regulator 87.1 1.6 5.6E-05 40.0 7.9 161 65-250 46-224 (412)
83 1lss_A TRK system potassium up 86.9 7.9 0.00027 28.9 10.8 115 50-172 4-135 (140)
84 2rjo_A Twin-arginine transloca 86.9 1.4 4.9E-05 38.8 7.2 182 64-265 26-234 (332)
85 3llv_A Exopolyphosphatase-rela 86.8 5.7 0.00019 30.2 9.8 119 157-290 11-133 (141)
86 3bil_A Probable LACI-family tr 86.4 7.7 0.00026 34.4 11.9 175 65-265 88-280 (348)
87 3d02_A Putative LACI-type tran 86.4 3.3 0.00011 35.6 9.1 191 64-275 25-238 (303)
88 2g1u_A Hypothetical protein TM 86.1 2.7 9.2E-05 32.9 7.7 113 178-292 19-149 (155)
89 2hmt_A YUAA protein; RCK, KTN, 85.8 4.4 0.00015 30.5 8.7 65 227-293 69-137 (144)
90 2hqb_A Transcriptional activat 85.6 7.1 0.00024 33.9 10.9 167 64-250 28-202 (296)
91 2pln_A HP1043, response regula 85.5 9.3 0.00032 28.3 12.0 110 177-300 17-135 (137)
92 5nul_A Flavodoxin; electron tr 85.4 7.1 0.00024 29.6 9.7 94 191-297 17-133 (138)
93 3llv_A Exopolyphosphatase-rela 85.3 8.4 0.00029 29.2 10.1 116 49-172 5-136 (141)
94 2fn9_A Ribose ABC transporter, 85.1 6.6 0.00023 33.4 10.4 177 64-264 23-226 (290)
95 2hmt_A YUAA protein; RCK, KTN, 84.8 3 0.0001 31.5 7.2 114 48-171 4-136 (144)
96 3h5o_A Transcriptional regulat 84.7 1.4 4.7E-05 39.1 5.9 175 64-263 83-276 (339)
97 1id1_A Putative potassium chan 84.5 6.1 0.00021 30.6 9.1 53 226-280 69-125 (153)
98 2xij_A Methylmalonyl-COA mutas 84.4 8.2 0.00028 38.8 11.7 112 178-297 604-730 (762)
99 2g1u_A Hypothetical protein TM 84.3 3.3 0.00011 32.3 7.4 117 46-172 15-150 (155)
100 1y80_A Predicted cobalamin bin 84.0 5.1 0.00017 33.2 8.8 109 49-169 87-206 (210)
101 3h5t_A Transcriptional regulat 83.9 1.5 5.1E-05 39.4 5.8 160 100-278 126-318 (366)
102 2wm8_A MDP-1, magnesium-depend 83.5 1.9 6.7E-05 34.7 5.8 56 243-298 125-182 (187)
103 1jx6_A LUXP protein; protein-l 83.2 9.1 0.00031 33.5 10.7 193 64-271 65-278 (342)
104 1lss_A TRK system potassium up 83.1 11 0.00038 28.0 9.9 57 226-282 67-124 (140)
105 1gud_A ALBP, D-allose-binding 83.0 13 0.00046 31.6 11.5 183 65-265 23-230 (288)
106 2wm8_A MDP-1, magnesium-depend 82.4 9.5 0.00032 30.4 9.7 105 58-173 69-178 (187)
107 1tjy_A Sugar transport protein 82.0 8.6 0.0003 33.5 10.0 186 65-273 25-234 (316)
108 3gl9_A Response regulator; bet 81.4 13 0.00045 27.0 12.9 107 179-297 3-121 (122)
109 2i2x_B MTAC, methyltransferase 81.4 9.6 0.00033 32.8 9.8 111 49-172 122-242 (258)
110 3aek_B Light-independent proto 81.4 38 0.0013 32.3 18.5 195 60-278 170-372 (525)
111 3c85_A Putative glutathione-re 81.3 8.3 0.00028 30.8 8.9 118 47-172 36-172 (183)
112 3gt7_A Sensor protein; structu 80.3 17 0.00058 27.6 14.1 110 178-299 7-128 (154)
113 3npg_A Uncharacterized DUF364 80.2 1.8 6.2E-05 37.5 4.7 142 133-294 83-232 (249)
114 2fp4_A Succinyl-COA ligase [GD 80.1 31 0.0011 30.4 14.7 241 47-298 10-301 (305)
115 1sc6_A PGDH, D-3-phosphoglycer 80.1 28 0.00096 32.1 13.1 168 50-239 4-208 (404)
116 4eyg_A Twin-arginine transloca 79.2 14 0.00046 32.5 10.4 158 101-272 71-241 (368)
117 3brs_A Periplasmic binding pro 79.0 3.7 0.00013 35.0 6.4 182 63-262 27-222 (289)
118 2cuk_A Glycerate dehydrogenase 78.8 30 0.001 30.6 12.4 165 51-239 1-204 (311)
119 2fqx_A Membrane lipoprotein TM 78.5 17 0.00057 31.9 10.7 165 64-250 28-209 (318)
120 3fwz_A Inner membrane protein 78.5 16 0.00054 27.8 9.4 113 50-171 7-137 (140)
121 1qgu_B Protein (nitrogenase mo 78.3 7.8 0.00027 37.1 8.9 141 61-209 232-391 (519)
122 1xrs_B D-lysine 5,6-aminomutas 78.3 14 0.00047 32.1 9.7 128 164-299 106-259 (262)
123 3ezx_A MMCP 1, monomethylamine 78.2 8.4 0.00029 32.3 8.1 110 48-169 90-212 (215)
124 2iuf_A Catalase; oxidoreductas 77.8 4.4 0.00015 40.2 7.0 121 177-301 528-680 (688)
125 2amj_A Modulator of drug activ 77.7 3.3 0.00011 34.3 5.4 65 178-247 12-95 (204)
126 3kp1_A D-ornithine aminomutase 77.4 16 0.00056 35.9 10.6 127 162-299 589-736 (763)
127 3ctp_A Periplasmic binding pro 77.4 8 0.00027 33.9 8.2 173 64-265 81-270 (330)
128 1jye_A Lactose operon represso 77.1 20 0.00069 31.6 10.9 172 65-263 83-275 (349)
129 4dad_A Putative pilus assembly 77.1 20 0.00069 26.6 10.1 113 177-301 19-144 (146)
130 1id1_A Putative potassium chan 76.4 24 0.00081 27.1 10.8 114 50-172 3-138 (153)
131 2pln_A HP1043, response regula 76.4 20 0.00069 26.3 9.7 113 46-174 14-130 (137)
132 3f2v_A General stress protein 76.0 2.2 7.4E-05 35.4 3.7 59 190-249 19-85 (192)
133 1e5d_A Rubredoxin\:oxygen oxid 76.0 44 0.0015 29.9 13.9 104 178-287 252-381 (402)
134 4evq_A Putative ABC transporte 75.9 40 0.0014 29.5 13.0 149 101-262 81-239 (375)
135 2xij_A Methylmalonyl-COA mutas 75.3 23 0.00079 35.5 11.5 111 49-172 603-726 (762)
136 3l9w_A Glutathione-regulated p 74.7 25 0.00085 32.5 11.1 108 157-280 9-122 (413)
137 3pdi_B Nitrogenase MOFE cofact 74.2 57 0.002 30.4 16.5 203 50-277 169-397 (458)
138 2q9u_A A-type flavoprotein; fl 73.8 43 0.0015 30.3 12.5 103 179-287 257-388 (414)
139 3lkv_A Uncharacterized conserv 73.5 25 0.00086 30.5 10.4 197 50-263 8-228 (302)
140 3rht_A (gatase1)-like protein; 73.1 7 0.00024 33.9 6.4 75 179-265 5-90 (259)
141 3f6r_A Flavodoxin; FMN binding 72.6 29 0.00099 26.3 9.9 76 191-276 20-119 (148)
142 4e5n_A Thermostable phosphite 72.6 52 0.0018 29.3 12.4 165 50-238 2-210 (330)
143 3fni_A Putative diflavin flavo 72.3 33 0.0011 26.8 10.1 93 191-288 23-133 (159)
144 4dgs_A Dehydrogenase; structur 71.6 30 0.001 31.1 10.5 166 48-239 28-233 (340)
145 2q62_A ARSH; alpha/beta, flavo 71.0 10 0.00036 32.4 7.0 72 178-250 34-126 (247)
146 3hut_A Putative branched-chain 70.9 52 0.0018 28.5 12.3 146 100-261 70-226 (358)
147 3hdv_A Response regulator; PSI 70.7 28 0.00096 25.4 10.4 110 178-299 7-128 (136)
148 2fzv_A Putative arsenical resi 70.7 7.2 0.00025 34.3 6.0 72 178-250 58-151 (279)
149 5nul_A Flavodoxin; electron tr 70.7 2.9 9.8E-05 31.9 3.1 61 63-135 17-86 (138)
150 1req_A Methylmalonyl-COA mutas 70.6 26 0.00089 35.0 10.5 113 178-298 596-723 (727)
151 1j4a_A D-LDH, D-lactate dehydr 70.6 30 0.001 30.9 10.3 167 51-239 2-210 (333)
152 1sqs_A Conserved hypothetical 70.3 12 0.0004 31.6 7.2 57 192-249 23-106 (242)
153 3i42_A Response regulator rece 70.1 27 0.00091 25.1 8.5 111 179-301 4-125 (127)
154 3nrc_A Enoyl-[acyl-carrier-pro 69.8 41 0.0014 28.6 10.8 85 46-135 22-112 (280)
155 4dik_A Flavoprotein; TM0755, e 69.6 11 0.00038 34.8 7.4 83 50-136 265-360 (410)
156 2vzf_A NADH-dependent FMN redu 69.3 5.6 0.00019 32.5 4.7 70 180-250 4-97 (197)
157 1fs0_G ATP synthase gamma subu 68.7 15 0.00052 31.0 7.5 69 228-297 57-143 (230)
158 3l5o_A Uncharacterized protein 68.4 11 0.00038 32.9 6.6 109 177-293 140-252 (270)
159 3td9_A Branched chain amino ac 68.0 61 0.0021 28.2 13.0 145 101-261 80-236 (366)
160 3kht_A Response regulator; PSI 67.8 34 0.0012 25.2 13.3 112 178-299 5-129 (144)
161 3grc_A Sensor protein, kinase; 67.4 34 0.0012 25.0 13.4 110 178-299 6-128 (140)
162 2i2x_B MTAC, methyltransferase 67.3 58 0.002 27.7 12.4 109 177-297 122-243 (258)
163 2xdq_B Light-independent proto 67.0 19 0.00064 34.3 8.5 197 60-278 183-395 (511)
164 2h1q_A Hypothetical protein; Z 66.9 11 0.00037 33.0 6.2 110 177-294 140-253 (270)
165 2xdq_A Light-independent proto 66.9 27 0.00092 32.5 9.5 140 51-208 197-347 (460)
166 3rht_A (gatase1)-like protein; 66.8 8.7 0.0003 33.3 5.6 74 50-136 4-87 (259)
167 3d64_A Adenosylhomocysteinase; 66.8 65 0.0022 30.5 12.1 36 44-79 69-105 (494)
168 3l4b_C TRKA K+ channel protien 66.7 37 0.0013 27.7 9.5 68 99-172 62-132 (218)
169 1p9l_A Dihydrodipicolinate red 66.2 61 0.0021 27.6 10.9 94 180-286 2-108 (245)
170 3s2u_A UDP-N-acetylglucosamine 65.4 58 0.002 29.0 11.2 104 179-298 212-324 (365)
171 2yq5_A D-isomer specific 2-hyd 65.2 6.8 0.00023 35.5 4.8 170 50-238 1-210 (343)
172 3hly_A Flavodoxin-like domain; 64.7 48 0.0016 25.8 10.7 91 192-288 20-128 (161)
173 3eod_A Protein HNR; response r 64.4 37 0.0013 24.4 11.4 113 46-173 3-122 (130)
174 2aef_A Calcium-gated potassium 64.3 23 0.00078 29.4 7.8 112 50-171 9-137 (234)
175 3tem_A Ribosyldihydronicotinam 64.2 3.6 0.00012 34.9 2.6 69 179-248 2-118 (228)
176 3hg7_A D-isomer specific 2-hyd 64.1 39 0.0013 30.1 9.6 169 47-239 2-205 (324)
177 3f6r_A Flavodoxin; FMN binding 63.8 6.6 0.00022 30.2 3.9 63 63-136 20-93 (148)
178 3hzh_A Chemotaxis response reg 63.7 43 0.0015 25.3 8.8 107 179-297 37-156 (157)
179 3hdv_A Response regulator; PSI 63.5 40 0.0014 24.5 10.5 113 49-174 6-124 (136)
180 3u7q_A Nitrogenase molybdenum- 63.2 1E+02 0.0035 29.1 16.3 217 58-297 231-465 (492)
181 1rtt_A Conserved hypothetical 62.7 15 0.00053 29.5 6.2 70 179-250 7-100 (193)
182 2qip_A Protein of unknown func 62.7 4.1 0.00014 32.6 2.6 83 62-146 63-153 (165)
183 2q1w_A Putative nucleotide sug 62.7 18 0.00062 31.6 7.1 74 36-110 7-97 (333)
184 2qh8_A Uncharacterized protein 62.4 66 0.0022 27.4 10.7 15 227-241 68-82 (302)
185 3f2v_A General stress protein 61.6 2.9 9.8E-05 34.6 1.5 50 62-112 19-68 (192)
186 1y80_A Predicted cobalamin bin 61.5 43 0.0015 27.4 8.9 107 178-295 88-208 (210)
187 3l4b_C TRKA K+ channel protien 61.5 29 0.00098 28.4 7.8 54 226-280 63-119 (218)
188 3k1y_A Oxidoreductase; structu 60.8 13 0.00044 30.5 5.4 71 179-250 12-113 (191)
189 1mio_A Nitrogenase molybdenum 60.8 1.2E+02 0.004 29.0 15.4 142 59-211 218-368 (533)
190 1rli_A Trp repressor binding p 60.5 11 0.00036 30.0 4.8 58 190-249 19-98 (184)
191 1req_A Methylmalonyl-COA mutas 60.5 47 0.0016 33.1 10.2 110 49-171 595-717 (727)
192 3fni_A Putative diflavin flavo 59.7 18 0.00063 28.4 6.0 67 64-136 24-95 (159)
193 4a26_A Putative C-1-tetrahydro 59.6 11 0.00039 33.4 5.1 150 66-238 59-220 (300)
194 1pea_A Amidase operon; gene re 59.6 38 0.0013 30.0 8.9 147 101-261 74-232 (385)
195 3pk0_A Short-chain dehydrogena 59.2 79 0.0027 26.5 10.8 74 46-123 6-84 (262)
196 3eaf_A ABC transporter, substr 59.2 94 0.0032 27.4 11.5 146 100-261 74-231 (391)
197 4fs3_A Enoyl-[acyl-carrier-pro 59.1 34 0.0012 28.9 8.1 74 46-123 2-82 (256)
198 3kto_A Response regulator rece 59.1 49 0.0017 24.1 10.5 109 178-299 6-127 (136)
199 3snr_A Extracellular ligand-bi 59.1 48 0.0016 28.6 9.3 145 101-261 68-222 (362)
200 3gt7_A Sensor protein; structu 59.0 54 0.0019 24.5 11.0 112 48-173 5-123 (154)
201 3k5i_A Phosphoribosyl-aminoimi 58.9 84 0.0029 28.5 11.2 34 177-211 23-56 (403)
202 3rpe_A MDAB, modulator of drug 58.9 11 0.00037 31.8 4.7 65 179-248 26-109 (218)
203 3fro_A GLGA glycogen synthase; 58.9 82 0.0028 27.8 11.1 176 101-297 187-394 (439)
204 3lkb_A Probable branched-chain 58.8 27 0.00092 31.0 7.7 148 101-261 74-230 (392)
205 3l9w_A Glutathione-regulated p 58.3 44 0.0015 30.7 9.2 101 50-159 4-122 (413)
206 3kp1_A D-ornithine aminomutase 58.1 25 0.00087 34.6 7.5 112 50-173 602-731 (763)
207 2zay_A Response regulator rece 58.0 53 0.0018 24.1 12.4 110 178-299 8-129 (147)
208 2j48_A Two-component sensor ki 57.6 34 0.0012 23.7 6.8 108 179-297 2-117 (119)
209 3gbv_A Putative LACI-family tr 57.3 46 0.0016 28.0 8.7 75 63-138 159-235 (304)
210 3hly_A Flavodoxin-like domain; 57.2 26 0.00088 27.5 6.4 67 63-136 19-90 (161)
211 1rtt_A Conserved hypothetical 57.2 20 0.00068 28.8 5.9 84 51-135 7-115 (193)
212 3lua_A Response regulator rece 56.8 54 0.0019 23.9 12.5 110 178-299 4-128 (140)
213 2gk3_A Putative cytoplasmic pr 56.5 3.5 0.00012 35.6 1.2 48 57-110 37-85 (256)
214 4gx0_A TRKA domain protein; me 56.3 46 0.0016 31.7 9.2 61 220-282 182-246 (565)
215 3njr_A Precorrin-6Y methylase; 56.0 44 0.0015 27.0 8.0 101 109-217 85-187 (204)
216 3mwd_B ATP-citrate synthase; A 55.9 1.1E+02 0.0039 27.3 11.9 71 178-250 168-247 (334)
217 3r6w_A FMN-dependent NADH-azor 55.9 10 0.00035 31.2 4.0 56 192-248 24-113 (212)
218 2yxd_A Probable cobalt-precorr 55.8 66 0.0023 24.6 9.1 100 104-213 59-160 (183)
219 1p90_A NAFY protein, hypotheti 55.7 13 0.00044 29.1 4.3 41 260-300 75-115 (145)
220 1fs0_G ATP synthase gamma subu 55.7 13 0.00046 31.4 4.7 48 102-155 57-115 (230)
221 1oi7_A Succinyl-COA synthetase 55.4 1E+02 0.0035 26.7 14.5 179 50-237 7-208 (288)
222 1xdw_A NAD+-dependent (R)-2-hy 55.4 89 0.0031 27.6 10.5 168 51-239 1-209 (331)
223 3cg4_A Response regulator rece 55.2 27 0.00091 25.6 6.0 109 178-298 7-127 (142)
224 4g2n_A D-isomer specific 2-hyd 55.2 1.2E+02 0.004 27.2 13.8 169 48-239 26-238 (345)
225 4gi5_A Quinone reductase; prot 55.0 8 0.00027 34.0 3.2 70 178-248 22-138 (280)
226 2fz5_A Flavodoxin; alpha/beta 55.0 9.4 0.00032 28.6 3.3 60 64-135 19-87 (137)
227 2aef_A Calcium-gated potassium 54.9 16 0.00055 30.4 5.1 54 226-281 69-126 (234)
228 4e4t_A Phosphoribosylaminoimid 54.8 25 0.00084 32.4 6.8 32 177-208 34-65 (419)
229 3jtm_A Formate dehydrogenase, 54.7 50 0.0017 29.7 8.7 153 64-238 31-230 (351)
230 3m3p_A Glutamine amido transfe 54.7 11 0.00038 32.4 4.1 55 49-112 2-58 (250)
231 1t0i_A YLR011WP; FMN binding p 54.1 17 0.00057 29.1 5.0 57 192-249 22-111 (191)
232 1dxy_A D-2-hydroxyisocaproate 54.1 46 0.0016 29.6 8.3 167 51-239 1-208 (333)
233 3oet_A Erythronate-4-phosphate 54.1 14 0.00047 34.0 4.8 162 50-239 3-181 (381)
234 3pp8_A Glyoxylate/hydroxypyruv 54.0 1.2E+02 0.0039 26.8 12.5 60 177-239 138-204 (315)
235 3t6k_A Response regulator rece 54.0 61 0.0021 23.6 13.4 110 178-299 4-125 (136)
236 2qr3_A Two-component system re 53.9 60 0.002 23.5 12.4 108 179-299 4-127 (140)
237 1xrs_B D-lysine 5,6-aminomutas 53.8 26 0.00088 30.4 6.3 111 49-172 119-253 (262)
238 3lte_A Response regulator; str 53.7 58 0.002 23.3 12.7 110 178-299 6-126 (132)
239 2g76_A 3-PGDH, D-3-phosphoglyc 53.6 1.2E+02 0.0041 26.9 12.7 164 50-239 26-230 (335)
240 1q7r_A Predicted amidotransfer 53.3 24 0.0008 29.3 5.9 51 48-113 21-71 (219)
241 3n0w_A ABC branched chain amin 53.2 70 0.0024 28.1 9.5 137 101-251 72-220 (379)
242 4gi5_A Quinone reductase; prot 52.9 8.5 0.00029 33.8 3.1 37 48-84 20-64 (280)
243 1sqs_A Conserved hypothetical 52.8 18 0.00063 30.3 5.2 57 65-121 24-105 (242)
244 2ekl_A D-3-phosphoglycerate de 52.5 1.2E+02 0.0041 26.5 12.8 165 49-239 4-207 (313)
245 3ipc_A ABC transporter, substr 52.5 84 0.0029 27.1 9.8 159 91-262 60-226 (356)
246 4imr_A 3-oxoacyl-(acyl-carrier 52.2 35 0.0012 29.1 7.0 95 25-125 10-108 (275)
247 3to5_A CHEY homolog; alpha(5)b 52.1 74 0.0025 24.0 9.8 110 177-297 11-132 (134)
248 2hpv_A FMN-dependent NADH-azor 52.0 15 0.00051 29.9 4.3 58 191-249 24-121 (208)
249 2qxy_A Response regulator; reg 51.5 67 0.0023 23.3 13.9 110 178-299 4-122 (142)
250 3okp_A GDP-mannose-dependent a 50.7 69 0.0024 27.9 9.0 19 279-297 325-343 (394)
251 3lte_A Response regulator; str 50.4 66 0.0023 23.0 10.2 112 49-174 5-122 (132)
252 3h1g_A Chemotaxis protein CHEY 50.0 68 0.0023 23.0 9.3 115 47-173 2-123 (129)
253 3tl3_A Short-chain type dehydr 49.9 38 0.0013 28.3 6.8 71 46-125 5-78 (257)
254 3l5o_A Uncharacterized protein 49.9 44 0.0015 29.0 7.2 114 46-172 137-252 (270)
255 3uce_A Dehydrogenase; rossmann 49.8 10 0.00034 31.3 3.0 63 47-109 3-66 (223)
256 3o38_A Short chain dehydrogena 49.8 79 0.0027 26.3 8.9 75 46-124 18-98 (266)
257 3i09_A Periplasmic branched-ch 49.7 1.2E+02 0.0041 26.4 10.4 137 101-251 70-218 (375)
258 3lft_A Uncharacterized protein 49.4 95 0.0032 26.2 9.4 15 227-241 61-75 (295)
259 2fzv_A Putative arsenical resi 49.2 32 0.0011 30.0 6.2 86 49-135 57-168 (279)
260 2ywj_A Glutamine amidotransfer 48.6 35 0.0012 27.2 6.1 70 51-138 1-78 (186)
261 1ykg_A SIR-FP, sulfite reducta 48.5 79 0.0027 24.6 8.1 50 226-276 54-127 (167)
262 2vzf_A NADH-dependent FMN redu 48.4 6.7 0.00023 32.0 1.6 67 69-135 30-109 (197)
263 3sg0_A Extracellular ligand-bi 48.4 61 0.0021 28.3 8.2 144 101-260 88-245 (386)
264 1cyd_A Carbonyl reductase; sho 48.3 66 0.0023 26.2 8.0 34 46-79 3-37 (244)
265 2hna_A Protein MIOC, flavodoxi 48.3 25 0.00084 26.9 4.9 62 63-137 20-91 (147)
266 3c48_A Predicted glycosyltrans 48.1 1.3E+02 0.0046 26.6 10.7 64 226-297 323-390 (438)
267 3l7n_A Putative uncharacterize 48.0 15 0.00052 30.9 3.9 86 51-146 1-101 (236)
268 1p77_A Shikimate 5-dehydrogena 47.7 64 0.0022 27.6 8.0 127 61-213 15-151 (272)
269 3tem_A Ribosyldihydronicotinam 47.5 9.6 0.00033 32.2 2.5 35 50-84 1-43 (228)
270 1lnq_A MTHK channels, potassiu 47.5 65 0.0022 28.2 8.2 112 50-171 115-243 (336)
271 3lop_A Substrate binding perip 47.4 36 0.0012 29.8 6.5 161 101-273 72-241 (364)
272 2xw6_A MGS, methylglyoxal synt 47.3 29 0.00099 26.8 5.0 87 128-250 31-124 (134)
273 1usg_A Leucine-specific bindin 47.0 1.3E+02 0.0046 25.5 12.2 145 101-260 68-224 (346)
274 3h5i_A Response regulator/sens 47.0 71 0.0024 23.3 7.3 110 48-172 3-119 (140)
275 3ddh_A Putative haloacid dehal 46.9 33 0.0011 27.2 5.7 90 59-160 107-203 (234)
276 1e5d_A Rubredoxin\:oxygen oxid 46.7 38 0.0013 30.4 6.6 79 50-135 252-343 (402)
277 2xok_G ATP synthase subunit ga 46.6 92 0.0031 27.6 8.9 66 228-296 104-184 (311)
278 2nv0_A Glutamine amidotransfer 46.5 32 0.0011 27.7 5.6 47 51-112 2-48 (196)
279 3lcm_A SMU.1420, putative oxid 46.5 11 0.00039 30.7 2.7 50 199-249 28-100 (196)
280 1t5b_A Acyl carrier protein ph 46.2 25 0.00085 28.1 4.8 57 192-249 24-113 (201)
281 4e7p_A Response regulator; DNA 46.1 87 0.003 23.1 10.4 117 46-175 16-138 (150)
282 3h75_A Periplasmic sugar-bindi 46.1 1.5E+02 0.005 25.7 10.3 85 51-138 146-244 (350)
283 3u7q_B Nitrogenase molybdenum- 46.0 27 0.00091 33.4 5.6 140 61-209 236-395 (523)
284 1req_B Methylmalonyl-COA mutas 46.0 52 0.0018 32.3 7.7 96 190-296 527-633 (637)
285 2dr1_A PH1308 protein, 386AA l 45.9 22 0.00074 31.3 4.8 75 49-124 94-175 (386)
286 3ixl_A Amdase, arylmalonate de 45.9 36 0.0012 28.8 5.9 70 227-300 65-142 (240)
287 3cg0_A Response regulator rece 45.8 81 0.0028 22.7 10.6 108 178-298 9-128 (140)
288 1dih_A Dihydrodipicolinate red 45.4 82 0.0028 27.1 8.3 57 227-287 71-133 (273)
289 3ej6_A Catalase-3; heme, hydro 45.3 1.3E+02 0.0044 29.8 10.4 116 177-300 536-675 (688)
290 4evq_A Putative ABC transporte 45.2 73 0.0025 27.7 8.2 87 49-138 150-242 (375)
291 3uug_A Multiple sugar-binding 45.1 58 0.002 27.9 7.4 67 64-138 24-94 (330)
292 3hdg_A Uncharacterized protein 43.9 87 0.003 22.5 11.2 107 179-298 8-125 (137)
293 3l6u_A ABC-type sugar transpor 43.8 30 0.001 29.1 5.2 82 52-137 137-230 (293)
294 1d4a_A DT-diaphorase, quinone 43.7 15 0.0005 31.8 3.1 69 180-249 4-120 (273)
295 3h5l_A Putative branched-chain 43.5 62 0.0021 28.9 7.6 92 49-143 163-262 (419)
296 3l4e_A Uncharacterized peptida 43.4 34 0.0012 28.3 5.2 72 47-126 24-102 (206)
297 3rd5_A Mypaa.01249.C; ssgcid, 43.3 1E+02 0.0035 26.1 8.7 34 46-79 12-46 (291)
298 1rli_A Trp repressor binding p 43.3 14 0.00047 29.3 2.7 70 51-121 4-97 (184)
299 1wwk_A Phosphoglycerate dehydr 43.2 1.7E+02 0.0057 25.5 12.6 164 50-239 3-207 (307)
300 2ohh_A Type A flavoprotein FPR 43.2 39 0.0013 30.3 6.1 111 178-295 256-394 (404)
301 3o74_A Fructose transport syst 43.0 1.2E+02 0.0041 24.8 8.9 62 138-207 24-88 (272)
302 2fz5_A Flavodoxin; alpha/beta 42.9 41 0.0014 24.9 5.3 49 192-250 19-76 (137)
303 3e48_A Putative nucleoside-dip 42.8 1.5E+02 0.005 24.8 10.0 73 51-126 1-98 (289)
304 3h1g_A Chemotaxis protein CHEY 42.7 90 0.0031 22.3 10.4 109 179-298 6-127 (129)
305 2dr1_A PH1308 protein, 386AA l 42.7 1.2E+02 0.004 26.3 9.2 59 177-237 94-155 (386)
306 4b79_A PA4098, probable short- 42.6 82 0.0028 26.7 7.7 32 48-79 9-41 (242)
307 2k6g_A Replication factor C su 42.6 35 0.0012 25.3 4.7 32 46-77 31-64 (109)
308 3lec_A NADB-rossmann superfami 42.4 55 0.0019 27.6 6.5 93 109-208 53-147 (230)
309 3i45_A Twin-arginine transloca 42.4 1.7E+02 0.0059 25.5 10.4 188 102-300 73-282 (387)
310 2ohh_A Type A flavoprotein FPR 42.3 27 0.00091 31.4 4.8 66 63-135 275-350 (404)
311 3hv2_A Response regulator/HD d 42.0 1E+02 0.0035 22.8 10.0 112 46-172 10-128 (153)
312 3rot_A ABC sugar transporter, 41.8 1.5E+02 0.0053 24.7 12.9 66 137-208 24-93 (297)
313 2gk3_A Putative cytoplasmic pr 41.6 64 0.0022 27.4 6.9 48 186-236 38-85 (256)
314 3gl9_A Response regulator; bet 41.6 92 0.0031 22.1 9.7 109 51-173 3-118 (122)
315 1xg5_A ARPG836; short chain de 41.5 1.5E+02 0.0053 24.7 10.4 33 47-79 29-62 (279)
316 4fgs_A Probable dehydrogenase 41.4 82 0.0028 27.2 7.6 85 26-123 11-99 (273)
317 2iss_D Glutamine amidotransfer 41.4 46 0.0016 27.1 5.8 52 46-112 16-67 (208)
318 3snr_A Extracellular ligand-bi 41.3 94 0.0032 26.6 8.2 82 49-133 134-221 (362)
319 2yvq_A Carbamoyl-phosphate syn 41.2 1.1E+02 0.0037 23.5 7.7 37 112-158 37-73 (143)
320 1vjo_A Alanine--glyoxylate ami 41.0 92 0.0032 27.3 8.2 33 177-209 108-140 (393)
321 2jba_A Phosphate regulon trans 40.7 93 0.0032 21.9 10.3 111 179-301 3-125 (127)
322 3dzz_A Putative pyridoxal 5'-p 40.5 1.1E+02 0.0039 26.5 8.7 73 49-124 108-192 (391)
323 3uif_A Sulfonate ABC transport 40.3 1.5E+02 0.0053 25.6 9.6 139 65-237 35-175 (348)
324 3t4x_A Oxidoreductase, short c 40.2 1.1E+02 0.0039 25.5 8.4 34 46-79 6-40 (267)
325 3evz_A Methyltransferase; NYSG 40.1 31 0.0011 28.1 4.5 46 165-210 159-206 (230)
326 3rpe_A MDAB, modulator of drug 40.1 18 0.0006 30.4 3.0 57 50-112 25-93 (218)
327 2f9f_A First mannosyl transfer 40.1 31 0.0011 26.9 4.4 121 166-299 40-163 (177)
328 2q62_A ARSH; alpha/beta, flavo 40.1 22 0.00077 30.3 3.7 65 47-112 31-108 (247)
329 3ib6_A Uncharacterized protein 40.0 58 0.002 25.7 6.1 95 58-161 35-144 (189)
330 3orq_A N5-carboxyaminoimidazol 39.8 54 0.0018 29.4 6.4 35 177-211 11-45 (377)
331 3m6m_D Sensory/regulatory prot 39.7 1.1E+02 0.0038 22.4 10.4 116 46-175 10-134 (143)
332 3g85_A Transcriptional regulat 39.6 37 0.0012 28.6 5.0 71 63-135 147-224 (289)
333 3tb6_A Arabinose metabolism tr 39.5 31 0.0011 29.0 4.6 74 64-137 157-239 (298)
334 3u7r_A NADPH-dependent FMN red 39.4 55 0.0019 26.6 5.9 26 224-250 63-95 (190)
335 3hv2_A Response regulator/HD d 39.2 1.1E+02 0.0039 22.5 13.3 109 177-298 13-133 (153)
336 4hs4_A Chromate reductase; tri 39.1 30 0.001 28.3 4.2 27 223-250 68-101 (199)
337 3nhm_A Response regulator; pro 39.0 1E+02 0.0035 21.9 9.9 109 179-300 5-124 (133)
338 3fvw_A Putative NAD(P)H-depend 38.8 33 0.0011 27.7 4.4 68 180-250 4-95 (192)
339 4id9_A Short-chain dehydrogena 38.7 1.6E+02 0.0056 25.2 9.4 64 44-110 13-85 (347)
340 2ch1_A 3-hydroxykynurenine tra 38.5 1.1E+02 0.0037 26.8 8.3 33 177-209 92-124 (396)
341 3p2o_A Bifunctional protein fo 38.5 79 0.0027 27.7 7.0 147 66-237 55-212 (285)
342 2bkw_A Alanine-glyoxylate amin 38.4 34 0.0012 30.0 4.8 75 49-124 85-166 (385)
343 3ksm_A ABC-type sugar transpor 38.3 38 0.0013 28.1 4.9 84 50-138 127-224 (276)
344 3gv0_A Transcriptional regulat 38.2 42 0.0014 28.3 5.2 87 50-138 127-227 (288)
345 3nbm_A PTS system, lactose-spe 38.1 96 0.0033 22.7 6.5 79 178-267 6-90 (108)
346 3lkb_A Probable branched-chain 38.1 1.4E+02 0.0049 26.1 9.0 84 49-135 142-231 (392)
347 1ka9_H Imidazole glycerol phos 38.1 64 0.0022 26.0 6.1 48 51-113 3-51 (200)
348 2a5l_A Trp repressor binding p 38.0 52 0.0018 26.1 5.5 56 192-249 25-98 (200)
349 3nav_A Tryptophan synthase alp 38.0 1.6E+02 0.0054 25.4 8.9 29 191-219 37-65 (271)
350 3l07_A Bifunctional protein fo 38.0 90 0.0031 27.3 7.3 148 65-237 55-213 (285)
351 4fs3_A Enoyl-[acyl-carrier-pro 38.0 42 0.0014 28.3 5.1 35 164-201 21-56 (256)
352 2jgn_A DBX, DDX3, ATP-dependen 38.0 74 0.0025 25.3 6.4 41 164-204 33-73 (185)
353 3ph3_A Ribose-5-phosphate isom 38.0 1.6E+02 0.0053 23.7 9.3 113 179-296 21-143 (169)
354 1kjq_A GART 2, phosphoribosylg 37.9 1.3E+02 0.0046 26.5 8.8 32 178-209 11-42 (391)
355 3eod_A Protein HNR; response r 37.7 1.1E+02 0.0037 21.7 12.4 109 177-298 6-126 (130)
356 3f9i_A 3-oxoacyl-[acyl-carrier 37.7 1.2E+02 0.004 24.9 7.9 34 46-79 10-44 (249)
357 2ebu_A Replication factor C su 37.7 44 0.0015 24.9 4.6 32 46-77 21-54 (112)
358 3m3p_A Glutamine amido transfe 37.6 42 0.0014 28.6 5.0 53 178-237 3-57 (250)
359 3qhp_A Type 1 capsular polysac 37.6 1.1E+02 0.0039 22.8 7.4 119 164-298 17-140 (166)
360 2ag5_A DHRS6, dehydrogenase/re 37.5 1.1E+02 0.0039 25.0 7.8 33 47-79 3-36 (246)
361 3jte_A Response regulator rece 37.4 1.2E+02 0.0039 22.0 12.0 109 179-297 4-122 (143)
362 1f0k_A MURG, UDP-N-acetylgluco 37.3 88 0.003 27.0 7.4 60 227-294 253-321 (364)
363 1wdi_A Hypothetical protein TT 37.3 2.3E+02 0.0077 25.5 9.8 73 190-271 190-266 (345)
364 2gcg_A Glyoxylate reductase/hy 37.3 2.1E+02 0.0072 25.0 10.6 144 47-212 5-186 (330)
365 3g1w_A Sugar ABC transporter; 37.3 1.3E+02 0.0043 25.3 8.3 74 63-138 146-224 (305)
366 2q9u_A A-type flavoprotein; fl 37.3 54 0.0019 29.6 6.1 79 50-135 256-348 (414)
367 2hpv_A FMN-dependent NADH-azor 37.3 13 0.00043 30.4 1.6 20 63-82 24-45 (208)
368 1a4i_A Methylenetetrahydrofola 37.2 90 0.0031 27.5 7.2 147 67-238 58-218 (301)
369 3f6p_A Transcriptional regulat 37.2 1.1E+02 0.0036 21.6 13.5 106 179-298 3-119 (120)
370 3n75_A LDC, lysine decarboxyla 37.2 1.9E+02 0.0064 28.7 10.3 79 51-138 2-86 (715)
371 2ark_A Flavodoxin; FMN, struct 37.2 37 0.0013 27.1 4.4 49 192-250 24-80 (188)
372 3h9u_A Adenosylhomocysteinase; 37.1 2.6E+02 0.0088 25.9 14.2 36 43-78 36-72 (436)
373 2hqr_A Putative transcriptiona 37.0 1.6E+02 0.0053 23.4 11.2 106 180-298 2-115 (223)
374 3ek2_A Enoyl-(acyl-carrier-pro 36.7 97 0.0033 25.7 7.3 75 46-124 10-89 (271)
375 2yv2_A Succinyl-COA synthetase 36.7 2.1E+02 0.0072 24.8 10.7 175 52-237 15-215 (297)
376 2z9v_A Aspartate aminotransfer 36.5 28 0.00096 30.7 3.9 75 49-124 82-163 (392)
377 3ezx_A MMCP 1, monomethylamine 36.4 1.8E+02 0.0061 23.9 8.7 106 177-293 91-212 (215)
378 2dri_A D-ribose-binding protei 36.3 43 0.0015 27.9 4.9 83 51-137 124-217 (271)
379 1l7b_A DNA ligase; BRCT, autos 36.2 40 0.0014 24.1 4.0 33 45-77 5-38 (92)
380 1ydg_A Trp repressor binding p 36.2 24 0.00083 28.6 3.2 70 179-249 7-105 (211)
381 3m6m_D Sensory/regulatory prot 36.2 1.3E+02 0.0043 22.1 13.5 110 178-299 14-137 (143)
382 2huf_A Alanine glyoxylate amin 36.1 1.4E+02 0.0046 26.1 8.5 15 258-272 216-230 (393)
383 2amj_A Modulator of drug activ 36.0 20 0.00068 29.5 2.6 43 64-112 38-80 (204)
384 3inp_A D-ribulose-phosphate 3- 35.9 2E+02 0.0068 24.3 10.3 156 129-298 67-245 (246)
385 1qv9_A F420-dependent methylen 35.9 24 0.00083 30.2 3.1 52 102-159 64-120 (283)
386 3s5p_A Ribose 5-phosphate isom 35.8 1.7E+02 0.0057 23.4 11.3 110 180-296 23-144 (166)
387 1t0i_A YLR011WP; FMN binding p 35.8 31 0.0011 27.5 3.8 19 94-112 76-94 (191)
388 1u7z_A Coenzyme A biosynthesis 35.6 29 0.001 29.3 3.6 34 46-79 4-54 (226)
389 3d3w_A L-xylulose reductase; u 35.4 1.4E+02 0.0049 24.1 8.1 33 47-79 4-37 (244)
390 1ygy_A PGDH, D-3-phosphoglycer 35.3 92 0.0031 29.6 7.5 164 50-239 4-207 (529)
391 2cok_A Poly [ADP-ribose] polym 35.0 48 0.0016 24.7 4.4 33 45-77 8-41 (113)
392 3u62_A Shikimate dehydrogenase 34.8 31 0.0011 29.5 3.8 151 61-240 14-178 (253)
393 3ej6_A Catalase-3; heme, hydro 34.5 81 0.0028 31.2 7.0 91 46-145 533-646 (688)
394 4e4t_A Phosphoribosylaminoimid 34.4 1.6E+02 0.0053 26.9 8.8 35 46-80 31-65 (419)
395 1lnq_A MTHK channels, potassiu 34.4 74 0.0025 27.8 6.4 54 226-281 175-232 (336)
396 4eyg_A Twin-arginine transloca 34.4 90 0.0031 27.0 6.9 93 49-143 138-239 (368)
397 1nyt_A Shikimate 5-dehydrogena 34.0 70 0.0024 27.3 6.0 117 65-204 20-145 (271)
398 2fn9_A Ribose ABC transporter, 34.0 38 0.0013 28.5 4.2 44 93-136 182-225 (290)
399 3ly1_A Putative histidinol-pho 33.9 72 0.0024 27.5 6.2 62 49-113 91-152 (354)
400 3q2o_A Phosphoribosylaminoimid 33.8 77 0.0026 28.4 6.5 35 177-211 13-47 (389)
401 3eul_A Possible nitrate/nitrit 33.8 1.4E+02 0.0048 21.9 12.6 113 177-299 14-136 (152)
402 3egc_A Putative ribose operon 33.6 1E+02 0.0035 25.7 7.0 89 50-138 125-225 (291)
403 1ycg_A Nitric oxide reductase; 33.6 46 0.0016 29.8 4.9 65 64-135 271-342 (398)
404 3r6w_A FMN-dependent NADH-azor 33.6 24 0.00082 28.9 2.8 21 64-84 24-46 (212)
405 1qv9_A F420-dependent methylen 33.4 55 0.0019 28.1 4.8 52 228-283 64-123 (283)
406 2gkg_A Response regulator homo 33.3 1.2E+02 0.0041 21.0 11.2 108 179-298 6-125 (127)
407 1qkk_A DCTD, C4-dicarboxylate 33.3 1.4E+02 0.0049 21.9 12.6 107 178-297 3-120 (155)
408 3ruf_A WBGU; rossmann fold, UD 33.3 2.3E+02 0.0079 24.3 10.7 62 47-111 22-109 (351)
409 3rqi_A Response regulator prot 33.1 1.7E+02 0.0057 22.6 10.5 112 47-173 4-121 (184)
410 2vsy_A XCC0866; transferase, g 33.0 37 0.0013 31.9 4.3 109 178-297 406-521 (568)
411 2z61_A Probable aspartate amin 32.9 69 0.0023 28.0 5.9 53 49-112 112-164 (370)
412 1t0b_A THUA-like protein; treh 32.8 70 0.0024 27.2 5.7 64 64-138 36-107 (252)
413 2ywd_A Glutamine amidotransfer 32.8 67 0.0023 25.4 5.4 79 51-145 3-90 (191)
414 3i1j_A Oxidoreductase, short c 32.6 1.3E+02 0.0045 24.5 7.4 75 46-124 10-91 (247)
415 3gyb_A Transcriptional regulat 32.6 53 0.0018 27.3 4.9 86 50-138 118-215 (280)
416 2iw1_A Lipopolysaccharide core 32.6 2.3E+02 0.008 24.1 13.7 174 102-298 136-337 (374)
417 1f4p_A Flavodoxin; electron tr 32.6 31 0.0011 26.1 3.1 61 65-136 21-92 (147)
418 4dim_A Phosphoribosylglycinami 32.5 97 0.0033 27.7 7.0 78 48-126 5-96 (403)
419 3to5_A CHEY homolog; alpha(5)b 32.5 1.6E+02 0.0054 22.1 8.6 102 103-216 13-119 (134)
420 3nnk_A Ureidoglycine-glyoxylat 32.4 29 0.001 30.8 3.4 62 49-112 87-148 (411)
421 4a5o_A Bifunctional protein fo 32.3 72 0.0025 27.9 5.7 147 65-237 56-213 (286)
422 3qi7_A Putative transcriptiona 32.2 2E+02 0.0069 26.0 8.9 184 100-300 85-294 (371)
423 3flh_A Uncharacterized protein 32.1 81 0.0028 23.1 5.4 38 165-203 59-99 (124)
424 4iin_A 3-ketoacyl-acyl carrier 32.1 46 0.0016 28.1 4.5 75 46-123 25-103 (271)
425 3k5i_A Phosphoribosyl-aminoimi 31.7 2.7E+02 0.0094 24.9 10.0 34 47-80 21-54 (403)
426 3g89_A Ribosomal RNA small sub 31.6 45 0.0015 28.1 4.2 105 102-210 104-212 (249)
427 1vjo_A Alanine--glyoxylate ami 31.5 38 0.0013 29.9 3.9 62 49-112 108-169 (393)
428 1vm6_A DHPR, dihydrodipicolina 31.5 1.6E+02 0.0054 24.8 7.5 94 180-287 14-114 (228)
429 3he8_A Ribose-5-phosphate isom 31.4 1.9E+02 0.0064 22.6 9.4 101 190-296 15-123 (149)
430 3exc_X Uncharacterized protein 31.4 1.4E+02 0.0048 21.1 6.3 50 49-98 2-55 (91)
431 3en0_A Cyanophycinase; serine 31.3 55 0.0019 28.7 4.8 68 178-249 56-129 (291)
432 1k68_A Phytochrome response re 31.2 1.4E+02 0.0048 21.1 13.1 111 178-298 2-131 (140)
433 3don_A Shikimate dehydrogenase 31.1 36 0.0012 29.6 3.5 154 61-241 14-188 (277)
434 3p0r_A Azoreductase; structura 31.0 54 0.0018 26.9 4.6 69 180-249 6-119 (211)
435 4id3_A DNA repair protein REV1 31.0 68 0.0023 22.0 4.5 33 45-77 5-38 (92)
436 1xdz_A Methyltransferase GIDB; 30.7 1.3E+02 0.0044 24.6 7.0 99 109-211 102-203 (240)
437 3ctl_A D-allulose-6-phosphate 30.7 2.3E+02 0.008 23.5 8.6 154 130-298 40-219 (231)
438 3gnl_A Uncharacterized protein 30.6 84 0.0029 26.7 5.8 90 109-206 53-145 (244)
439 1o1y_A Conserved hypothetical 30.6 45 0.0015 28.1 4.0 52 50-110 12-65 (239)
440 2xok_G ATP synthase subunit ga 30.6 49 0.0017 29.4 4.4 41 102-144 104-153 (311)
441 1d4a_A DT-diaphorase, quinone 30.5 32 0.0011 29.6 3.2 35 50-84 2-44 (273)
442 3hn0_A Nitrate transport prote 30.5 82 0.0028 26.8 5.8 122 102-246 34-160 (283)
443 2yv1_A Succinyl-COA ligase [AD 30.4 2.7E+02 0.0091 24.1 12.1 174 52-237 15-214 (294)
444 3vot_A L-amino acid ligase, BL 30.3 3E+02 0.01 24.6 10.0 80 47-126 2-99 (425)
445 3bul_A Methionine synthase; tr 30.3 1.6E+02 0.0056 28.4 8.3 87 49-142 97-193 (579)
446 1oi4_A Hypothetical protein YH 30.3 2E+02 0.007 22.7 9.1 96 46-145 19-134 (193)
447 3b6i_A Flavoprotein WRBA; flav 30.2 86 0.0029 24.7 5.6 56 192-249 21-95 (198)
448 2h3h_A Sugar ABC transporter, 30.2 75 0.0026 27.0 5.6 84 51-138 124-219 (313)
449 2qr3_A Two-component system re 30.0 1.5E+02 0.0051 21.1 10.2 110 50-174 3-123 (140)
450 3hs3_A Ribose operon repressor 29.8 81 0.0028 26.3 5.6 86 49-137 121-216 (277)
451 3nnk_A Ureidoglycine-glyoxylat 29.8 1.6E+02 0.0054 25.8 7.9 15 257-271 209-223 (411)
452 8abp_A L-arabinose-binding pro 29.7 1.2E+02 0.0042 25.3 6.8 74 63-138 153-235 (306)
453 3i6i_A Putative leucoanthocyan 29.6 1.3E+02 0.0046 25.9 7.3 33 47-79 7-40 (346)
454 2hiy_A Hypothetical protein; C 29.6 2.2E+02 0.0075 22.9 8.0 114 52-209 7-133 (183)
455 1kjq_A GART 2, phosphoribosylg 29.4 1.1E+02 0.0036 27.2 6.6 32 49-80 10-41 (391)
456 3cnb_A DNA-binding response re 29.3 1.6E+02 0.0053 21.1 14.3 111 178-300 8-132 (143)
457 1obo_A Flavodoxin; electron tr 29.3 61 0.0021 25.1 4.4 38 99-136 43-88 (169)
458 3svl_A Protein YIEF; E. coli C 29.2 66 0.0023 26.0 4.7 28 222-250 66-100 (193)
459 2iuf_A Catalase; oxidoreductas 29.2 81 0.0028 31.2 6.0 92 46-145 525-648 (688)
460 3kke_A LACI family transcripti 29.1 95 0.0032 26.2 6.0 76 63-138 151-236 (303)
461 2hqr_A Putative transcriptiona 29.0 2.1E+02 0.0073 22.6 10.3 110 51-175 1-113 (223)
462 3nra_A Aspartate aminotransfer 29.0 1.4E+02 0.0048 26.2 7.4 74 49-126 125-213 (407)
463 4g65_A TRK system potassium up 29.0 3.5E+02 0.012 25.0 10.9 126 164-292 221-365 (461)
464 1d2f_A MALY protein; aminotran 28.9 1.9E+02 0.0066 25.1 8.3 73 49-124 110-194 (390)
465 3snk_A Response regulator CHEY 28.9 1.6E+02 0.0054 21.0 9.9 108 178-298 14-133 (135)
466 1rpn_A GDP-mannose 4,6-dehydra 28.8 1.4E+02 0.0048 25.5 7.1 34 46-79 10-44 (335)
467 2ch1_A 3-hydroxykynurenine tra 28.6 46 0.0016 29.3 4.0 62 49-112 92-153 (396)
468 2nu8_A Succinyl-COA ligase [AD 28.6 2.8E+02 0.0096 23.8 11.4 228 50-296 7-287 (288)
469 2huf_A Alanine glyoxylate amin 28.5 47 0.0016 29.2 4.0 62 49-112 93-154 (393)
470 3td9_A Branched chain amino ac 28.5 1.7E+02 0.0057 25.3 7.7 81 49-133 148-235 (366)
471 3rfq_A Pterin-4-alpha-carbinol 28.5 64 0.0022 26.2 4.5 49 62-114 51-101 (185)
472 4eu1_A Mitochondrial aspartate 28.2 2.7E+02 0.0091 24.5 9.2 74 49-124 130-215 (409)
473 4gud_A Imidazole glycerol phos 28.1 1.4E+02 0.0047 24.0 6.6 48 51-113 3-51 (211)
474 3get_A Histidinol-phosphate am 28.1 34 0.0012 29.9 3.0 60 49-113 105-164 (365)
475 2vk2_A YTFQ, ABC transporter p 28.1 1.7E+02 0.0058 24.6 7.5 46 93-138 179-230 (306)
476 2rjn_A Response regulator rece 28.0 1.8E+02 0.0061 21.3 12.2 112 47-173 4-122 (154)
477 3tnl_A Shikimate dehydrogenase 27.9 1.1E+02 0.0038 27.0 6.3 62 47-111 151-235 (315)
478 2pjk_A 178AA long hypothetical 27.9 88 0.003 25.1 5.2 48 63-114 43-93 (178)
479 1m32_A 2-aminoethylphosphonate 27.8 49 0.0017 28.5 4.0 63 49-112 79-141 (366)
480 3grc_A Sensor protein, kinase; 27.8 1.7E+02 0.0057 20.9 10.0 111 49-173 5-123 (140)
481 1b0a_A Protein (fold bifunctio 27.7 92 0.0031 27.3 5.6 68 162-237 141-211 (288)
482 3l4e_A Uncharacterized peptida 27.7 1.3E+02 0.0045 24.6 6.3 67 177-250 26-99 (206)
483 2qe7_G ATP synthase subunit ga 27.5 21 0.00071 31.3 1.4 69 228-297 75-161 (286)
484 3ek2_A Enoyl-(acyl-carrier-pro 27.4 78 0.0027 26.3 5.1 28 177-204 13-43 (271)
485 3qk7_A Transcriptional regulat 27.3 1.2E+02 0.0042 25.4 6.4 75 64-138 147-226 (294)
486 1c7n_A Cystalysin; transferase 27.3 2.6E+02 0.0088 24.3 8.9 73 49-124 112-196 (399)
487 3hcw_A Maltose operon transcri 27.3 2.7E+02 0.0092 23.1 11.7 62 138-208 34-98 (295)
488 3cz5_A Two-component response 27.3 1.8E+02 0.0063 21.2 9.6 114 48-175 3-123 (153)
489 3dhn_A NAD-dependent epimerase 27.2 2.3E+02 0.0079 22.4 10.2 82 50-136 4-112 (227)
490 1yb1_A 17-beta-hydroxysteroid 27.2 75 0.0026 26.7 5.0 97 20-123 4-104 (272)
491 3l7n_A Putative uncharacterize 27.2 76 0.0026 26.4 4.9 50 180-236 2-53 (236)
492 3zrp_A Serine-pyruvate aminotr 27.0 44 0.0015 29.1 3.6 62 49-112 76-137 (384)
493 2ayx_A Sensor kinase protein R 26.9 2.6E+02 0.009 22.9 11.6 110 177-299 128-248 (254)
494 3a2b_A Serine palmitoyltransfe 26.9 1.4E+02 0.0047 26.2 6.9 56 49-112 126-183 (398)
495 1o2d_A Alcohol dehydrogenase, 26.8 1.7E+02 0.0057 26.2 7.4 64 178-241 40-112 (371)
496 2pke_A Haloacid delahogenase-l 26.8 83 0.0028 25.6 5.1 51 103-159 154-207 (251)
497 1y5e_A Molybdenum cofactor bio 26.6 72 0.0025 25.2 4.4 49 62-114 33-84 (169)
498 3ha2_A NADPH-quinone reductase 26.5 1.3E+02 0.0044 24.0 5.9 51 192-248 20-77 (177)
499 3isl_A Purine catabolism prote 26.5 1.6E+02 0.0053 25.9 7.2 33 177-209 85-117 (416)
500 3e8x_A Putative NAD-dependent 26.5 63 0.0022 26.3 4.2 34 46-79 17-51 (236)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.1e-47 Score=343.28 Aligned_cols=243 Identities=18% Similarity=0.176 Sum_probs=214.4
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
+|+.|++||+|||..+++++.+.|+++|++++.+|+|++++.++...+.+.+.++.+||||||||+|||++|++.+.+.+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999987777888887788999999999999999999988765
Q ss_pred C--CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc--c-CCCCCCEEEEeCCCcchhhHHHHHHhC
Q 022128 126 T--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (302)
Q Consensus 126 ~--~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~--~-~~~~~~~vL~~rg~~~~~~L~~~L~~~ 200 (302)
. .+++++|||++|+++|+++ |+.++++|+.+++++|++.+. . ...++++||++||+.+++.|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 4 3589999999999999999 999999998899999998886 3 234689999999999999999999999
Q ss_pred CCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCe
Q 022128 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~--~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
|++|+++++|++++.+.....+.+.+ ..+|+|+|||+++++ +|++.+.+. ...+++++||||+|+++++++|+++
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~ 234 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQ-NLYQLAAADWPEIGRLPLFVPSPRVAEMARELGAQR 234 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHH-HHHHHHGGGHHHHTTSCEEESSHHHHHHHHHTTCSS
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHhhHHHHHHhCCeEEEECHHHHHHHHHcCCCc
Confidence 99999999999999887655443333 689999999999999 999988753 1346889999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHH
Q 022128 277 VYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 277 ~~v~~~~~~~~ll~~i~~~ 295 (302)
++++++|+.++|+++|.++
T Consensus 235 ~~~a~~~~~~~l~~ai~~a 253 (254)
T 4es6_A 235 VIDCRGASAPALLAALTSA 253 (254)
T ss_dssp EEECSSSSHHHHHHHHHHC
T ss_pred eEECCCCCHHHHHHHHHhh
Confidence 9999999999999999863
No 2
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=6.1e-48 Score=347.94 Aligned_cols=245 Identities=20% Similarity=0.197 Sum_probs=209.3
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
..+.|++||||||.++++++.+.|+++|++++.+|+|++++.++...+.+.+.++.+||||||||+|||++|++.+.+.+
T Consensus 10 ~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~ 89 (269)
T 3re1_A 10 MDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVW 89 (269)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999887667888887788999999999999999999998765
Q ss_pred C--CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc--c-CCCCCCEEEEeCCCcchhhHHHHHHhC
Q 022128 126 T--PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (302)
Q Consensus 126 ~--~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~--~-~~~~~~~vL~~rg~~~~~~L~~~L~~~ 200 (302)
. .+++++|||++|+++|+++ |+.++++|+.+++|+|++.+. . ...++++||++||+.+++.|.+.|+++
T Consensus 90 ~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~ 163 (269)
T 3re1_A 90 PQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRER 163 (269)
T ss_dssp SSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHC
Confidence 4 3589999999999999999 999999988899999998875 3 133689999999999999999999999
Q ss_pred CCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcc--cCCCceEEEECHHHHHHHHHcCCCe
Q 022128 201 GFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 201 G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~--~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
|++|+++++|++++.+.....+.+.+ +.+|+|+|||+++++ +|++.+.+. ...+.+++||||+|+++++++|+++
T Consensus 164 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~ 242 (269)
T 3re1_A 164 GVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFE-HLLQLAGDSWPDLAGLPLFVPSPRVASLAQAAGARN 242 (269)
T ss_dssp TCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHT-TTHHHHGGGHHHHTTSCEEESSHHHHHHHHHHTCSS
T ss_pred CCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHH-HHHHHhhHHHHHHhCCeEEEECHHHHHHHHHCCCCc
Confidence 99999999999999876544333222 689999999999999 999988653 1346889999999999999999999
Q ss_pred EEecCCCChHHHHHHHHHHHH
Q 022128 277 VYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 277 ~~v~~~~~~~~ll~~i~~~~~ 297 (302)
++++++|+.++|+++|.+++.
T Consensus 243 ~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 243 VIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp EEECSSSSHHHHHHHHHHSCC
T ss_pred eEECCCCCHHHHHHHHHHHhc
Confidence 999999999999999998774
No 3
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=5.4e-47 Score=344.63 Aligned_cols=251 Identities=18% Similarity=0.127 Sum_probs=206.4
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCcc
Q 022128 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFD 104 (302)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d 104 (302)
+.-+.+++|||. +|+.|++|||||+.. ++++.+.|+++|++++.+|+|++++. +.+.+.+.+.++ ++||
T Consensus 17 ~~~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~d 86 (286)
T 3d8t_A 17 GLDSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGVD 86 (286)
T ss_dssp ------------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCCS
T ss_pred hccCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCCC
Confidence 455678999999 999999999999987 99999999999999999999999987 666677777666 4799
Q ss_pred EEEEeChHHHHHHHHHHHHcCCC------CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCC
Q 022128 105 WIIITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKK 178 (302)
Q Consensus 105 ~IifTS~~av~~f~~~l~~~~~~------~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~ 178 (302)
||||||+|||++|++.+.+.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.. +
T Consensus 87 ~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~----g 155 (286)
T 3d8t_A 87 LFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----G 155 (286)
T ss_dssp EEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----C
T ss_pred EEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----C
Confidence 99999999999999998876543 689999999999999999 99999999 8999999998865 6
Q ss_pred C-EEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc---
Q 022128 179 C-TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE--- 252 (302)
Q Consensus 179 ~-~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~--- 252 (302)
+ +||++||+.+++.|.+.|+++|++|.++++|++++......++.+.+ ..+|+|+|||+++|+ +|++.+.+..
T Consensus 156 ~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~-~~~~~~~~~~~~~ 234 (286)
T 3d8t_A 156 RGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVE-FLFEGAKDPKALR 234 (286)
T ss_dssp CSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHH-HHHHHCSCHHHHH
T ss_pred CceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHHhccchh
Confidence 8 99999999999999999999999999999999995432223333333 579999999999999 9999876421
Q ss_pred --CC-CceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 253 --QW-SNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 253 --~~-~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
.. +.+++|||++|+++++++|+++++++++|+.++|+++|.+++.+
T Consensus 235 ~~l~~~~~i~aIG~~TA~al~~~G~~~~~~a~~~~~~~L~~~l~~~~~~ 283 (286)
T 3d8t_A 235 EALNTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKRALQK 283 (286)
T ss_dssp HHHTTTSEEEEESHHHHHHHHHTTCCCSEEECSSCHHHHHHHHHHHHHH
T ss_pred hHhhcCCEEEEECHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHHHHhh
Confidence 23 57899999999999999999988899999999999999998754
No 4
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=5.5e-46 Score=337.91 Aligned_cols=251 Identities=19% Similarity=0.229 Sum_probs=208.9
Q ss_pred cccCCCCCCCeEEEeCCC-CCh---HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHH
Q 022128 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (302)
Q Consensus 42 ~~~~~~l~g~~IlitR~~-~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f 117 (302)
+|-..++.||+|++||+. +++ +++.+.|+++|++++.+|++++++.+ .+.+.+.+..+.+||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 566799999999999997 777 99999999999999999999999864 4567777766788999999999999999
Q ss_pred HHHHHHcCC------------CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeC
Q 022128 118 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 185 (302)
Q Consensus 118 ~~~l~~~~~------------~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~r 185 (302)
++.+.+.+. .+.+++|||++|+++|+++ |+.+ ++|..+++++|++.+.....++++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998876543 3689999999999999999 9988 78889999999999886655688999999
Q ss_pred CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEECcHHHHHHHHHhhhcc---cCCCceEE
Q 022128 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSSWVNLISDT---EQWSNSVA 259 (302)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~---~~~~~~i~ 259 (302)
|+.+++.|.+.|++.|++|.++++|++++.+.....+.+.+ ..+|+|+|||+++|+ +|++.+.+. ...+.+++
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~-~f~~~~~~~~~~~l~~~~i~ 243 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLT-YSLKHIQELSGDNIDQIKFA 243 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHH-HHHHHHHHHHGGGGGGSEEE
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHH-HHHHHHhhhccccccCCEEE
Confidence 99999999999999999999999999998765433332222 579999999999999 999888651 12357899
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccCC
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
||||+|+++++++|++++++++.|+.++|+++|.+++.+++.
T Consensus 244 aIG~~Ta~~l~~~G~~~~~va~~~~~~~ll~al~~~~~~~~~ 285 (286)
T 1jr2_A 244 AIGPTTARALAAQGLPVSCTAESPTPQALATGIRKALQPHGC 285 (286)
T ss_dssp ESSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHHTC----
T ss_pred EECHHHHHHHHHcCCCceEecCCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999998899999999999999999988764
No 5
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=8.1e-46 Score=328.40 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=202.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~ 129 (302)
||+||||||..+++++.+.|+++|++++.+|+|++++.++.+ ..+..+++||||||||+|||++|++.+.. .+++.
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~---~~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQ---AQLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCH---HHHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHH---HHHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 899999999999999999999999999999999999987543 33334578999999999999999998763 45679
Q ss_pred eEEEEChhhHHHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 130 ~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+++|||++|+++|+++ |+.++++|+.+ ++|+|++.+......+++||++||+.+++.|.+.|+++|++|++++
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999887 9999998776544578999999999999999999999999999999
Q ss_pred eeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc---CCCceEEEECHHHHHHHHHcCCCeEEecCCC
Q 022128 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~---~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~ 283 (302)
+|++.+.+.....+.+.+ .++|+|+|||+++++ +|++.+.+.. ..+.+++||||+|+++++++|+++++++++|
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~-~~~~~~~~~~~~~l~~~~~~aiG~~ta~~l~~~G~~~~~va~~p 229 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLE-NLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAA 229 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHH-HHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSS
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHH-HHHHHcchHHHHHHhCCCEEEECHHHHHHHHHcCCCceEeCCCC
Confidence 999999887665544333 589999999999999 9999886531 1257899999999999999999999999999
Q ss_pred ChHHHHHHHH
Q 022128 284 GLEGWVDSIL 293 (302)
Q Consensus 284 ~~~~ll~~i~ 293 (302)
+.++|+++|+
T Consensus 230 ~~~~ll~al~ 239 (240)
T 3mw8_A 230 NQAAVLDALG 239 (240)
T ss_dssp SHHHHHHHHT
T ss_pred CHHHHHHHhh
Confidence 9999999874
No 6
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=4e-45 Score=327.55 Aligned_cols=239 Identities=19% Similarity=0.153 Sum_probs=206.3
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeChHHHHHHHHHHHHc
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKEA 124 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~~d~IifTS~~av~~f~~~l~~~ 124 (302)
+|+.|++||+||+.. ++++.+.|+++|++++++|+|++++. +.+.+.+.+.++ ++||||||||+|||++|++.+.+.
T Consensus 4 ~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~ 81 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKAL 81 (261)
T ss_dssp ----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHh
Confidence 799999999999987 89999999999999999999999998 666777777666 579999999999999999998876
Q ss_pred CCC------CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCC-EEEEeCCCcchhhHHHHH
Q 022128 125 GTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEGL 197 (302)
Q Consensus 125 ~~~------~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~-~vL~~rg~~~~~~L~~~L 197 (302)
+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.. ++ +||++||+.+++.|.+.|
T Consensus 82 ~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~L 150 (261)
T 1wcw_A 82 GLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENAL 150 (261)
T ss_dssp TCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHHH
T ss_pred CchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHHH
Confidence 543 589999999999999999 99999999 8999999998865 68 999999999999999999
Q ss_pred HhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhccc-----CC-CceEEEECHHHHHHH
Q 022128 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTE-----QW-SNSVACIGETTASAA 269 (302)
Q Consensus 198 ~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~-----~~-~~~i~~IG~~Ta~~l 269 (302)
+++|++|.++++|++.+......++.+.+ ..+|+|+|||+++|+ +|++.+.+.. .. +.+++|||++|++++
T Consensus 151 ~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~-~~~~~~~~~~~~~~~l~~~~~~~aIG~~Ta~~l 229 (261)
T 1wcw_A 151 AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVE-FLFEGAKDPKALREALNTRVKALAVGRVTADAL 229 (261)
T ss_dssp HHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHH-HHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHH
T ss_pred HHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHH-HHHHHHhhccchhHHhhcCCEEEEECHHHHHHH
Confidence 99999999999999995432223333333 689999999999999 9999876421 22 578999999999999
Q ss_pred HHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 270 KRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 270 ~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+++|+++++++++|+.++|+++|.+++.+
T Consensus 230 ~~~G~~~~~~a~~~~~~~l~~~l~~~~~~ 258 (261)
T 1wcw_A 230 REWGVKPFYVDETERLGSLLQGFKRALQK 258 (261)
T ss_dssp HHTTCCCSEEECSCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCceecCCCCHHHHHHHHHHHhhh
Confidence 99999988889999999999999998753
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=100.00 E-value=1.5e-37 Score=273.69 Aligned_cols=202 Identities=21% Similarity=0.226 Sum_probs=167.0
Q ss_pred cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC----CCCceEEEEChhhHHHHHHHhhccC
Q 022128 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (302)
Q Consensus 75 ~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~----~~~~~i~aVG~~Ta~~l~~~~~~~~ 150 (302)
.++.+|+++|++.+.. .++++||||||||+|||++|++.+.+.+ +.+++++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 6889999999998642 2678999999999999999998775322 35789999999999999999
Q ss_pred CCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CC
Q 022128 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS 228 (302)
Q Consensus 151 ~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~ 228 (302)
|+.++++|+.+++|+|++.|.... ++++||++||+.+++.|.+.|+++|++|+++++|++++.+.... ..+.+ +.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLS-EQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHH-HHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHH-HHHHHhcCC
Confidence 999999999999999999887533 57899999999999999999999999999999999999876543 33333 57
Q ss_pred CCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHH
Q 022128 229 IPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 229 ~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~ 295 (302)
+|+|+|||+++++ +|++.+.. ..+.+++||||+|+++++++|+++ .++++|+.++|+++|++.
T Consensus 162 ~d~v~ftS~s~v~-~~~~~~~~--~~~~~~~aIG~~Ta~~l~~~G~~v-~va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 162 KSILIFTAISHAK-AFLHYFEF--LENYTAISIGNTTALYLQEQGIPS-YIAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEECSHHHHH-HHHHHSCC--CTTCEEEESSHHHHHHHHHTTCCE-EECSSSSHHHHHHHHHHT
T ss_pred CeEEEEECHHHHH-HHHHHhCc--ccCCEEEEECHHHHHHHHHcCCCc-eeCCCCCHHHHHHHHHHH
Confidence 9999999999999 99998752 235789999999999999999985 589999999999999875
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.66 E-value=4.1e-16 Score=136.69 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=102.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~ 127 (302)
+.|++||++|+....+.+.+.|+++|+++..+|+|++++.++...+.+.+ ..+.+|+|+|||+++|+.|++.+. +..
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 36899999999999999999999999999999999999887544455555 457899999999999999998763 346
Q ss_pred CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 128 ~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
+++++|||+.|+++++++ |++++ +|+.++.++|++.+.+.
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHT
T ss_pred CCEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHH
Confidence 899999999999999999 99975 78999999999988765
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.66 E-value=2.8e-16 Score=142.13 Aligned_cols=122 Identities=20% Similarity=0.205 Sum_probs=105.1
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc--
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-- 124 (302)
..|++||++|+....+.+.+.|++.|++|..+|+|++++.++. +.+.+.+...+.+|+|+|||+++|+.|++.+.+.
T Consensus 155 ~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 155 SSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred cCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 4589999999998899999999999999999999999987653 2455555444679999999999999999988652
Q ss_pred -CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
.+.+++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+..
T Consensus 235 ~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 235 DNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 345789999999999999999 999988899999999999887654
No 10
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.64 E-value=3.3e-16 Score=140.47 Aligned_cols=123 Identities=13% Similarity=0.129 Sum_probs=106.1
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~- 124 (302)
...|++||++|+....+.+.+.|++.|++|..+|+|++++... .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRV-EVERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHH-HHTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHH-HcCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998753 34454555 33679999999999999999987643
Q ss_pred -CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC
Q 022128 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK 176 (302)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~ 176 (302)
.+.+++++|||+.|+++++++ |++++++|+.++.++|++.|.+...
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~~ 263 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQPQ 263 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSCC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHhc
Confidence 346889999999999999999 9999888999999999999987654
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.2e-15 Score=135.60 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=104.4
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~- 124 (302)
...|++||++|+....+.+.+.|+++|++|..+++|++++.++ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4679999999999999999999999999999999999998763 34555555 34679999999999999999987643
Q ss_pred -CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
.+.+++++|||+.|+++++++ |++++++|+.++.++|++.|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 246889999999999999999 9999888999999999988754
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.60 E-value=8e-16 Score=136.98 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=98.3
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---
Q 022128 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (302)
Q Consensus 50 g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~--- 124 (302)
|+ +||++|+....+.+.+.|++.|+++..+|+|++++..+ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAL-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHH-HHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 88 99999999999999999999999999999999996432 23333334 23679999999999999999876431
Q ss_pred --CCC-CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 125 --~~~-~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
.+. +++++|||+.|+++++++ |+.++++|+.++.++|++.|.++
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 124 689999999999999999 99998889899999999887653
No 13
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.60 E-value=1.9e-15 Score=136.63 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=99.1
Q ss_pred CC-eEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc---
Q 022128 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (302)
Q Consensus 50 g~-~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~--- 124 (302)
|+ +||++|+....+.+.+.|++.|++|..+|+|++++..+ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999996432 23333444 34679999999999999999876431
Q ss_pred --CCC-CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 125 --~~~-~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
.+. +++++|||+.|+++++++ |+.++++|+.++.++|++.|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 134 789999999999999999 99998889899999999888653
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.59 E-value=2.7e-15 Score=132.02 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=96.1
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCce
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNS 257 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~ 257 (302)
|++||+.|+......|.+.|++.|+++..+++|+.++.+.. .+....+.++|+|+|||+++|+ +|++.+... ..+.+
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~-~~~~~~l~~~d~viftS~~aV~-~~~~~l~~~-l~~~~ 77 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVT-QAQLDELSRADILIFISTSAVS-FATPWLKDQ-WPKAT 77 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCC-HHHHHHHTTCSEEEECSHHHHH-HHHHHHTTC-CCSSE
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccH-HHHHHHhcCCCEEEEECHHHHH-HHHHHHHhh-CcCCe
Confidence 57899999999999999999999999999999999998743 3344456889999999999999 999987632 22579
Q ss_pred EEEECHHHHHHHHHcCCCeEEecCCC-ChHHHHHHHH
Q 022128 258 VACIGETTASAAKRLGLKNVYYPTHP-GLEGWVDSIL 293 (302)
Q Consensus 258 i~~IG~~Ta~~l~~~G~~~~~v~~~~-~~~~ll~~i~ 293 (302)
++|||+.|+++|+++|+.++++|+.+ +.++|++.+.
T Consensus 78 ~~aVG~~Ta~~L~~~G~~~~~~p~~~~~~e~L~~~~~ 114 (240)
T 3mw8_A 78 YYAVGDATADALALQGITAERSPADSQATEGLLTLPS 114 (240)
T ss_dssp EEESSHHHHHHHHHTTCCCEECC---CCGGGGGGCGG
T ss_pred EEEECHHHHHHHHHcCCCCccCCCCcCCHHHHHHhhh
Confidence 99999999999999999998999888 9999998654
No 15
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.56 E-value=0.043 Score=47.90 Aligned_cols=194 Identities=10% Similarity=0.013 Sum_probs=110.7
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.++++ |+.+.......-. .+.+...+.++. -.++|+||+.... +...+++.+.+. ++++++++...
T Consensus 30 gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~~ 104 (304)
T 3gbv_A 30 GIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSCC
T ss_pred HHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 355667777 8888765543221 222222222322 3679999998754 445555655553 67899998654
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeC----CCcc-------hhhHHHHHHhCCCeeEE
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~r----g~~~-------~~~L~~~L~~~G~~v~~ 206 (302)
... . .+.. +..+. ..+..+++.|.+....+++|+++. |... ..-+.+.|++.|..+..
T Consensus 105 ~~~---~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~~ 174 (304)
T 3gbv_A 105 KDA---P------PLAF-FGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACNI 174 (304)
T ss_dssp TTS---C------CSEE-EECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred CCC---C------ceEE-EecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcEE
Confidence 210 0 1221 22232 234445566665543347999998 4322 23466788888888776
Q ss_pred EeeeeeecCCCCcHHHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHH--HHHHHHcCCC
Q 022128 207 LNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETT--ASAAKRLGLK 275 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~T--a~~l~~~G~~ 275 (302)
..++..........+.... -.++++|+..+-. +. .+++.+.+....++.++.++... .+.+. -|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~-g~~~al~~~g~~di~vig~d~~~~~~~~~~-~~~~ 246 (304)
T 3gbv_A 175 LELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VY-IIGEYLQQRRKSDFSLIGYDLLERNVTCLK-EGTV 246 (304)
T ss_dssp EEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-TH-HHHHHHHHTTCCSCEEEEESCCHHHHHHHH-HTSE
T ss_pred EEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hH-HHHHHHHHcCCCCcEEEEeCCCHHHHHHHH-cCce
Confidence 6665544333333222222 2478999998887 66 66677766544457888886554 34444 4654
No 16
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.13 E-value=0.015 Score=50.98 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=106.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++.+..-.-. .....+.+.+ .-.++|+||+.+...-...++.+.+ .+++++++|....
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~---- 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYIL-ETGSADGVIISKIEPNDPRVRFMTE---RNMPFVTHGRSDM---- 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHH-HHTCCSEEEEESCCTTCHHHHHHHH---TTCCEEEESCCCS----
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHH-HcCCccEEEEecCCCCcHHHHHHhh---CCCCEEEECCcCC----
Confidence 3445667789988766432211 1122333333 2267999999875543344555554 3678999987531
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.. ++..........+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++.. .
T Consensus 101 ~~------~~~~V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~---~ 169 (288)
T 3gv0_A 101 GI------EHAFHDFDNEAYAYEAVERLAQCG--RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI---E 169 (288)
T ss_dssp SC------CCEEEEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT---T
T ss_pred CC------CCcEEEeCcHHHHHHHHHHHHHCC--CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecc---c
Confidence 11 332211111223444556666543 4689999887543 3456778888877654333321 2
Q ss_pred CCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCC
Q 022128 217 HVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLK 275 (302)
Q Consensus 217 ~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~ 275 (302)
...+ +.... + ..+++|+..+-..+. .+++.+.+... .++.+++++..-......-++.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~d~~~~~~~~~p~lt 237 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTI-ALVAGFEAAGVKIGEDVDIVSKQSAEFLNWIKPQIH 237 (288)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHH-HHHHHHHTTTCCTTTSCEEEEEESSTTHHHHCTTSE
T ss_pred cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEEecChHHHhccCCCce
Confidence 2221 22222 2 358999999988887 77777776542 3577888776543333333443
No 17
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.92 E-value=0.037 Score=48.30 Aligned_cols=182 Identities=9% Similarity=-0.003 Sum_probs=101.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+.......++ .....+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 98 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT-----AEDIVREREAVGQFFERRVDGLILAPSEGEHDYLR---TELPKTFPIVAVNRELR- 98 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHH---HSSCTTSCEEEESSCCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH---HhhccCCCEEEEecccC-
Confidence 3455667788998876532 1122222222222 25799999988765333333 33335789999997652
Q ss_pred HHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++..........+..+++.|.+.. .++|+++.+.... .-+.+.|++.|..+....++...
T Consensus 99 ---~~------~~~~V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 99 ---IP------GCGAVLSENVRGARTAVEYLIARG--HTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp ---CT------TCEEEEECHHHHHHHHHHHHHHTT--CCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHcC--CCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 12 342222211223444556666543 4689999887642 34667788888775432222222
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+.... + .++++|+..+-..+. .+++.+.+... .++.++.++..-
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSHRITE-GAMQALNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSHHHHH-HHHHHHHHHTCCBTTTBEEEEESCCG
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEecCch
Confidence 222222222222 2 468999999988887 77777776532 357788877544
No 18
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.84 E-value=0.15 Score=44.19 Aligned_cols=191 Identities=10% Similarity=0.057 Sum_probs=102.9
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH--HHHHHH
Q 022128 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFL 118 (302)
Q Consensus 50 g~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~--av~~f~ 118 (302)
.++|.+.-|...+ ..+.+.++++|++++.... ..+.+...+.++.+ .++|+||+.... .....+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 3455555443322 3455667788998876532 12222222222222 579999988654 555556
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------- 190 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------- 190 (302)
+.+.+ .++++++++.... . ++.. +..+. ..+..+++.|.+.....++|+++.|....
T Consensus 80 ~~~~~---~~iPvV~~~~~~~-----~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~ 144 (291)
T 3l49_A 80 QKIND---AGIPLFTVDTATP-----H------AINN-TTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRY 144 (291)
T ss_dssp HHHHH---TTCCEEEESCCCT-----T------CSEE-EEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHH
T ss_pred HHHHH---CCCcEEEecCCCC-----C------cCce-EecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHH
Confidence 65655 3678999987541 1 3322 22222 23444555665521234689999876543
Q ss_pred hhHHHHHHhC-CCeeEE-EeeeeeecCCCCcH---H----HHHHcC---CCCEEEEECcHHHHHHHHHhhhcccCCCceE
Q 022128 191 NEIEEGLSNR-GFEVVR-LNTYTTEPVHHVDQ---T----VLKQAL---SIPVVAVASPSAVRSSWVNLISDTEQWSNSV 258 (302)
Q Consensus 191 ~~L~~~L~~~-G~~v~~-~~vY~~~~~~~~~~---~----~~~~~~---~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i 258 (302)
.-+.+.|++. |+.+.. ..++. .....+ + +++... ++++|+..+-..+. .+++.+.+....++.+
T Consensus 145 ~gf~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~di~v 220 (291)
T 3l49_A 145 DQMKYVLEAFPDVKIIEPELRDV---IPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMI-GATQALQAAGRTDIRT 220 (291)
T ss_dssp HHHHHHHHTCTTEEECSSCBCCC---SSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHH-HHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHCCCCEEEeeeccCC---CCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHH-HHHHHHHHcCCCCeEE
Confidence 2355677777 454211 11111 111111 1 122224 68999888888877 7777777654336777
Q ss_pred EEECHH
Q 022128 259 ACIGET 264 (302)
Q Consensus 259 ~~IG~~ 264 (302)
+.++..
T Consensus 221 vg~d~~ 226 (291)
T 3l49_A 221 YGVDGS 226 (291)
T ss_dssp EEEECC
T ss_pred EEecCC
Confidence 777543
No 19
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.75 E-value=0.14 Score=44.72 Aligned_cols=204 Identities=8% Similarity=-0.020 Sum_probs=110.2
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH--HHHHHH
Q 022128 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFL 118 (302)
Q Consensus 50 g~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~--av~~f~ 118 (302)
+++|.+.-+...+ ..+.+.++++|++++.+- ....+.+...+.++.+ .++|+||+.+.. +....+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 5566555444332 344556677899887531 1112322222222221 479999997543 334455
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch------h
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------N 191 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~ 191 (302)
+.+.+ .++++++++..... . ..+.. +..+. ..+..+++.|.+.....++|+++.+.... .
T Consensus 80 ~~~~~---~~iPvV~~~~~~~~----~-----~~~~~-V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~ 146 (305)
T 3g1w_A 80 NKAVD---AGIPIVLFDSGAPD----S-----HAHSF-LGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTT 146 (305)
T ss_dssp HHHHH---TTCCEEEESSCCTT----S-----CCSCE-EECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHH
T ss_pred HHHHH---CCCcEEEECCCCCC----C-----ceeEE-ECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHH
Confidence 55555 36789999875421 1 01222 22222 23344555555542234689999876432 2
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH-
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT- 265 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T- 265 (302)
-+.+.|++.|..+....++..........+.... + .++++|+..+-..+. .+++.+.+... .++.++.++..-
T Consensus 147 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~di~vig~d~~~~ 225 (305)
T 3g1w_A 147 GFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGV-GVGDAVRLESRAGEIQIISFDTDKG 225 (305)
T ss_dssp HHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEESCCHH
T ss_pred HHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchh-hHHHHHHhcCCCCCeEEEEeCCCHH
Confidence 3677788888877766655432211111112222 2 468888888877777 67777766543 357888887644
Q ss_pred -HHHHHH
Q 022128 266 -ASAAKR 271 (302)
Q Consensus 266 -a~~l~~ 271 (302)
...+..
T Consensus 226 ~~~~~~~ 232 (305)
T 3g1w_A 226 TLDLVDE 232 (305)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 444444
No 20
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.73 E-value=0.22 Score=44.64 Aligned_cols=220 Identities=11% Similarity=0.015 Sum_probs=111.4
Q ss_pred CCeEEEeCCCCCh--------HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCh-HHHHH
Q 022128 50 NPKVVVTRERGKN--------GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSV 116 (302)
Q Consensus 50 g~~IlitR~~~~~--------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~l~~~d~IifTS~-~av~~ 116 (302)
.++|.+.-|...+ ..+.+.++++|+++..+.. ..+.. .+...+..-.++|+||++.. .....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~ 77 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQ 77 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHH
Confidence 3455555544332 2345566778998876521 12222 23333321147999999862 34444
Q ss_pred HHHHHHHcCCCCceEEEEChhhHHHHHHHhhcc---CCCCceeccCCC-ccHHHHHHhcccCC----CCC-CEEEEeCCC
Q 022128 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSS---KCSLDVAFSPSK-ATGKILASELPKNG----KKK-CTVLYPASA 187 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~---~~G~~~~~~p~~-~~~e~L~~~L~~~~----~~~-~~vL~~rg~ 187 (302)
+++.+. ..++++++++......-....+.. .......+..+. ..+..+++.|.+.. ... ++|+++.|.
T Consensus 78 ~~~~~~---~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~ 154 (350)
T 3h75_A 78 ILRLSQ---GSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGL 154 (350)
T ss_dssp HHHHHT---TSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESC
T ss_pred HHHHHH---hCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCC
Confidence 444433 357899999876532211000000 000011122222 22334445554433 112 589999887
Q ss_pred cch-------hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---
Q 022128 188 KAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ--- 253 (302)
Q Consensus 188 ~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~--- 253 (302)
... .-+.+.|++.|. +....++..........+.... + .++++|+..+-..+. ..++.+.+...
T Consensus 155 ~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~-g~~~al~~~G~~vP 232 (350)
T 3h75_A 155 KVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMAL-GAMQAARELGRKPG 232 (350)
T ss_dssp TTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCCBT
T ss_pred CCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHH-HHHHHHHHcCCCCC
Confidence 542 346778888886 3333333222111111111222 2 467888888877777 67777766542
Q ss_pred CCceEEEECHHHHH--HHHHcCCCeEEe
Q 022128 254 WSNSVACIGETTAS--AAKRLGLKNVYY 279 (302)
Q Consensus 254 ~~~~i~~IG~~Ta~--~l~~~G~~~~~v 279 (302)
.++.++.++..... .+..-.+..+..
T Consensus 233 ~di~vvg~d~~~~~l~~~~~~~lttv~~ 260 (350)
T 3h75_A 233 TDLLFSGVNSSPEALQALIDGKLSVLEA 260 (350)
T ss_dssp TTBEEEEESCCHHHHHHHHHTSSCEEEE
T ss_pred CCeEEEecCCCHHHHHHHHcCCeeEEEc
Confidence 35778888755443 666656665443
No 21
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.51 E-value=0.069 Score=46.37 Aligned_cols=182 Identities=12% Similarity=0.045 Sum_probs=100.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
..+.+.++++|+++..+..-.- ......+.+.+ .-.++|+||+.+...-.. . +.+....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~-~~~~~~~~iPvV~~~~~~---- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--E-YLNKASLTLPIILFNRLS---- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--H-HHHHCCCSSCEEEESCCC----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--H-HHHhccCCCCEEEECCCC----
Confidence 3455677788998876543221 11111111222 125799999987654331 1 222223578999999742
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
- ++..........+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++.....
T Consensus 102 --~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~ 171 (289)
T 3g85_A 102 --N------KYSSVNVDNYKMGEKASLLFAKKR--YKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENS 171 (289)
T ss_dssp --S------SSEEEEECHHHHHHHHHHHHHHTT--CCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSS
T ss_pred --C------CCCEEEeCHHHHHHHHHHHHHHcC--CCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCC
Confidence 1 332222222233455666666643 4679988876532 3466778888877654333322111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEEC--HHH
Q 022128 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIG--ETT 265 (302)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG--~~T 265 (302)
.....+.... + ..+++|+.++-..+. .+++.+.+... .++.+++++ ...
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d~~~~~ 229 (289)
T 3g85_A 172 IHGGVDAAKKLMKLKNTPKALFCNSDSIAL-GVISVLNKRQISIPDDIEIVAIGMNDRE 229 (289)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECSCHH
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEcCCHHHH-HHHHHHHHcCCCCCCceEEEEeCCCCcc
Confidence 1111122222 2 368999999888887 77777776542 357788887 544
No 22
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.44 E-value=0.038 Score=48.05 Aligned_cols=181 Identities=7% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|+++.....- .+.+...+.++ .-.++|+||+.+...-....+.+.+ .+++++.+|......
T Consensus 34 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~~ 105 (292)
T 3k4h_A 34 GISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHE---QNFPFVLIGKPYDRK 105 (292)
T ss_dssp HHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHH---TTCCEEEESCCSSCT
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHH---CCCCEEEECCCCCCC
Confidence 4556778889988754321 11121122222 2367999999776544445555555 367899998754210
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. ++.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++...
T Consensus 106 ---~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 173 (292)
T 3k4h_A 106 ---D------EITY-VDNDNYTAAREVAEYLISLG--HKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFD 173 (292)
T ss_dssp ---T------TSCE-EECCHHHHHHHHHHHHHHTT--CCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred ---C------CCCE-EEECcHHHHHHHHHHHHHCC--CceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecC
Confidence 0 1222 22222 23444556666543 3689999887542 34667888888776443333221
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+.... + ..+++|+.++-..+. .+++.+.+... .++.+++++..-
T Consensus 174 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d~~~ 231 (292)
T 3k4h_A 174 FSRESGQQAVEELMGLQQPPTAIMATDDLIGL-GVLSALSKKGFVVPKDVSIVSFNNAL 231 (292)
T ss_dssp SSHHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEcChHHHH-HHHHHHHHhCCCCCCeEEEEEecCcc
Confidence 111111112222 2 368999999888887 77777776532 457788887653
No 23
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.40 E-value=0.054 Score=47.44 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=102.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++.+..-. ......+.+.+ .-.+.|+||+.+...-...++.+.+ .+++++++|....
T Consensus 31 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 99 (294)
T 3qk7_A 31 WIGIELGKRGLDLLLIPDEP---GEKYQSLIHLV-ETRRVDALIVAHTQPEDFRLQYLQK---QNFPFLALGRSHL---- 99 (294)
T ss_dssp HHHHHHHHTTCEEEEEEECT---TCCCHHHHHHH-HHTCCSEEEECSCCSSCHHHHHHHH---TTCCEEEESCCCC----
T ss_pred HHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHH-HcCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCCCC----
Confidence 45567778999998776432 12233344444 2257999999876433334444544 3678999987521
Q ss_pred HHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
.. ++... ..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.....
T Consensus 100 ~~------~~~~V-~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 170 (294)
T 3qk7_A 100 PK------PYAWF-DFDNHAGASLAVKRLLELG--HQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPT 170 (294)
T ss_dssp SS------CCEEE-EECHHHHHHHHHHHHHHTT--CCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSS
T ss_pred CC------CCCEE-EcChHHHHHHHHHHHHHCC--CceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCC
Confidence 11 33322 2222 23344555565543 3689999876532 3466778888877643333332211
Q ss_pred CCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.....+..+. + ..+++|+.++-..+- .+++.+.+... .++.++.++..-
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 171 RPGGYLAASRLLALEVPPTAIITDCNMLGD-GVASALDKAGLLGGEGISLIAYDGLP 226 (294)
T ss_dssp HHHHHHHHHHHHHSSSCCSEEEESSHHHHH-HHHHHHHHTTCSSTTSCEEEEETCSC
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEeecCcc
Confidence 1111112222 2 468999988877777 67777766532 356777776543
No 24
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=95.28 E-value=0.8 Score=38.16 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEE
Q 022128 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 127 ~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~ 206 (302)
.+..++.-..+|++.|++.+ ++++.-+ ..++-++.+.|......+.+|.++.
T Consensus 50 ~~~dVIISRGgta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg--------------------- 101 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIA--------------------- 101 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEE---------------------
T ss_pred CCCeEEEECChHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEe---------------------
Confidence 34556666677999999885 6666444 4567777777765443345666653
Q ss_pred EeeeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCCh
Q 022128 207 LNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 285 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~ 285 (302)
|..... ....+.+.+ .++....+.|+..++ ..++.+.+. +..+++=|-.+.+.++++|++.+.+ ..+.
T Consensus 102 ---~~~~~~--~~~~~~~ll~~~i~~~~~~~~~e~~-~~i~~l~~~---G~~vvVG~~~~~~~A~~~Gl~~vli--~sg~ 170 (196)
T 2q5c_A 102 ---YKHSIV--DKHEIEAMLGVKIKEFLFSSEDEIT-TLISKVKTE---NIKIVVSGKTVTDEAIKQGLYGETI--NSGE 170 (196)
T ss_dssp ---ESSCSS--CHHHHHHHHTCEEEEEEECSGGGHH-HHHHHHHHT---TCCEEEECHHHHHHHHHTTCEEEEC--CCCH
T ss_pred ---Ccchhh--HHHHHHHHhCCceEEEEeCCHHHHH-HHHHHHHHC---CCeEEECCHHHHHHHHHcCCcEEEE--ecCH
Confidence 322211 112222223 356677888888888 666666553 5678777889999999999997654 3468
Q ss_pred HHHHHHHHHHHH
Q 022128 286 EGWVDSILEALR 297 (302)
Q Consensus 286 ~~ll~~i~~~~~ 297 (302)
+++.+++.++.+
T Consensus 171 eSI~~Ai~eA~~ 182 (196)
T 2q5c_A 171 ESLRRAIEEALN 182 (196)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888764
No 25
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=95.13 E-value=0.052 Score=46.74 Aligned_cols=177 Identities=10% Similarity=0.037 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.+.|+||+.+...-...++.+.+. ++++++++....
T Consensus 24 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGYS-----DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS---NTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEEC-----TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH---TCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEeeccC--
Confidence 345667788988764321 1222222222222 2578999987653223344444443 578888886432
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+....++..
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 161 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQG--FKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE- 161 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTTT--CCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSS-
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHCC--CCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeC-
Confidence 11 3322 22222 22344556666542 3689999876432 2466788888876644333321
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
....+ +..+. + ..+++|+.++-..+. .+++.+.+... .++.++.++..-
T Consensus 162 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 220 (275)
T 3d8u_A 162 --APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAI-GALFECHRRVLKVPTDIAIICLEGSS 220 (275)
T ss_dssp --CCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEESSCCH
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHH-HHHHHHHHcCCCCCCceEEEecCCch
Confidence 22221 12222 2 358999888888777 67777766432 356788887643
No 26
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=95.01 E-value=0.34 Score=39.11 Aligned_cols=113 Identities=15% Similarity=0.254 Sum_probs=71.0
Q ss_pred CCCEEEEeCCC-----cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHH
Q 022128 177 KKCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSW 244 (302)
Q Consensus 177 ~~~~vL~~rg~-----~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~ 244 (302)
+..+|++.+.. .+...+...|+..|++|..+-.. .+.+++.+.+ .++|+|.+++.. .++ .+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~-~~ 89 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMK-RL 89 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHH-HH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHH-HH
Confidence 34577766433 24467888899999988665543 2233333332 588988888753 344 45
Q ss_pred HHhhhcccCCCceEEEECHHHHH---HHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 245 VNLISDTEQWSNSVACIGETTAS---AAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 245 ~~~l~~~~~~~~~i~~IG~~Ta~---~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
.+.+++....++++++-|....+ .+++.|...++ .+..+.++.++.+++.+.
T Consensus 90 i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~-~~~~~~~~~~~~~~~~~~ 144 (161)
T 2yxb_A 90 MAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIF-LPGTSLGEIIEKVRKLAE 144 (161)
T ss_dssp HHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEE-CTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEE-CCCCCHHHHHHHHHHHHH
Confidence 55555533335788887854432 37889998654 555577777787777764
No 27
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=94.95 E-value=0.51 Score=40.35 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=87.2
Q ss_pred ceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 129 ~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
..++.-..+|++.|++.+ ++++.-+ ..++-++.+.|......+++|.++.-...-..
T Consensus 64 ~dVIISRGgta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~---------------- 120 (225)
T 2pju_A 64 CDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPA---------------- 120 (225)
T ss_dssp CSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHH----------------
T ss_pred CeEEEeCChHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhH----------------
Confidence 556666677999999875 6666444 45677777888765544566666633222111
Q ss_pred eeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHH
Q 022128 209 TYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 287 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ 287 (302)
...+.+.+ .++....+.|+..++ ..++.+.+. +..+++=|-.+.+.++++|++.+.+- +.++
T Consensus 121 ----------~~~i~~ll~~~i~~~~~~~~ee~~-~~i~~l~~~---G~~vVVG~~~~~~~A~~~Gl~~vlI~---s~eS 183 (225)
T 2pju_A 121 ----------LVAFQKTFNLRLDQRSYITEEDAR-GQINELKAN---GTEAVVGAGLITDLAEEAGMTGIFIY---SAAT 183 (225)
T ss_dssp ----------HHHHHHHHTCCEEEEEESSHHHHH-HHHHHHHHT---TCCEEEESHHHHHHHHHTTSEEEESS---CHHH
T ss_pred ----------HHHHHHHhCCceEEEEeCCHHHHH-HHHHHHHHC---CCCEEECCHHHHHHHHHcCCcEEEEC---CHHH
Confidence 11122222 356678888888888 776666653 56787778899999999999987654 3688
Q ss_pred HHHHHHHHHH
Q 022128 288 WVDSILEALR 297 (302)
Q Consensus 288 ll~~i~~~~~ 297 (302)
+.+++.++++
T Consensus 184 I~~Ai~eA~~ 193 (225)
T 2pju_A 184 VRQAFSDALD 193 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888864
No 28
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.76 E-value=0.19 Score=43.59 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=105.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH-----HHHH
Q 022128 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSV 116 (302)
Q Consensus 51 ~~IlitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~-----av~~ 116 (302)
++|.+.-+... ...+.+.++++|++++.+..- .+.+...+.++. -.++|+||+.... ....
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-----NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 55655544332 234566777889988765321 222222222222 2679999997653 2233
Q ss_pred HHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------h
Q 022128 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------S 190 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~ 190 (302)
.++.+.+ .+++++.++.... .. ++..........+..+++.|.+.. .++|.++.+... .
T Consensus 91 ~~~~~~~---~~iPvV~~~~~~~----~~------~~~~V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~R~ 155 (298)
T 3tb6_A 91 YYLNLEK---NGIPFAMINASYA----EL------AAPSFTLDDVKGGMMAAEHLLSLG--HTHMMGIFKADDTQGVKRM 155 (298)
T ss_dssp HHHHHHH---TTCCEEEESSCCT----TC------SSCEEEECHHHHHHHHHHHHHHTT--CCSEEEEEESSSHHHHHHH
T ss_pred HHHHHHh---cCCCEEEEecCcC----CC------CCCEEEeCcHHHHHHHHHHHHHCC--CCcEEEEcCCCCccHHHHH
Confidence 4444554 3678999987542 11 222211211223445556666543 357888876544 2
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCC-C--c---HHHHHHcCC--CCEEEEECcHHHHHHHHHhhhcccC---CCceEE
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHH-V--D---QTVLKQALS--IPVVAVASPSAVRSSWVNLISDTEQ---WSNSVA 259 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~-~--~---~~~~~~~~~--~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~ 259 (302)
.-+.+.|++.|..+....++....... . . .++++...+ +++|+..+-..+. .+++.+.+... .++.++
T Consensus 156 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 156 NGFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIAL-KVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHH-HHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHH-HHHHHHHHcCCCCCCceEEE
Confidence 346778889887764333322211111 1 1 112222245 8999998888887 77777776532 356777
Q ss_pred EECHHH
Q 022128 260 CIGETT 265 (302)
Q Consensus 260 ~IG~~T 265 (302)
+++..-
T Consensus 235 g~d~~~ 240 (298)
T 3tb6_A 235 GYDDSH 240 (298)
T ss_dssp CSBCCT
T ss_pred ecCCcH
Confidence 776543
No 29
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.73 E-value=0.16 Score=44.58 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=99.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHH-HHHHHHHcCCCCceEEEEChhhH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~-f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
..+.+.++++|++++.+..- .+.+...+.++. -.++|+||+.+...-.. .++.+.+ +++++.+|....
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~~ 105 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQID-----APPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRVP 105 (303)
T ss_dssp HHHHHHHHHTTCCEEEEECC-----STTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCCT
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcCC
Confidence 34556777899998754321 122222222222 36799999987544333 4444433 678999997653
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
. . +.. +..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.
T Consensus 106 ~---~--------~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 171 (303)
T 3kke_A 106 G---R--------VGS-VILDDQKGGGIATEHLITLG--HSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD 171 (303)
T ss_dssp T---C--------CCE-EEECHHHHHHHHHHHHHHTT--CCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred C---C--------CCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 2 1 111 11222 23344555665543 3689999886542 346677888998765322332
Q ss_pred eecCCCCcHH-HHHH-----c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 212 TEPVHHVDQT-VLKQ-----A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 212 ~~~~~~~~~~-~~~~-----~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.........+ +.+. + ..+++|+.++-..+- .+++.+.+... .++.++.++..-
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D~~~ 236 (303)
T 3kke_A 172 AGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAV-GALSTALRLGLRVPEDLSIVGINTTW 236 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEESCCH
T ss_pred cCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEEcChh
Confidence 2111111111 2222 3 358999998888777 67777766542 357788887653
No 30
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.66 E-value=0.22 Score=43.39 Aligned_cols=180 Identities=8% Similarity=0.028 Sum_probs=96.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++..+. ..+.+...+.++. -.+.|+||+.+...-...++.+.+ .++++++++....
T Consensus 37 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSNS-----DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR---SPVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH---SSSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEccccC--
Confidence 345567788998765321 1222222222222 257999999764322333444444 4678999987542
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc-ch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-AS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~-~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|.++.|.. .. .-+.+.|++.|..+....++..
T Consensus 107 --~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 175 (289)
T 2fep_A 107 --QE------ETPS-VAIDYEQAIYDAVKLLVDKG--HTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEG 175 (289)
T ss_dssp --TC------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEECcHHHHHHHHHHHHHCC--CCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeC
Confidence 11 3322 22222 23444556666543 46899998865 32 2467788889977643223322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
........+..+. + ..+++|+..+-..+. .+++.+.+... .++.++.++...
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~di~vvg~D~~~ 234 (289)
T 2fep_A 176 DYTYDSGLEALQHLMSLDKKPTAILSATDEMAL-GIIHAAQDQGLSIPEDLDIIGFDNTR 234 (289)
T ss_dssp CSCHHHHHHHHHHHTTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECCG
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEEECChH
Confidence 1111111122222 2 358999888888777 67777765432 356777776543
No 31
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=94.29 E-value=1.7 Score=37.61 Aligned_cols=185 Identities=11% Similarity=0.062 Sum_probs=95.2
Q ss_pred HHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.++++|+ +++.... ..+.+...+.++. -.++|+||+.... .....++.+.+ .++++++++...
T Consensus 23 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 94 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMNDS-----QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNKEP 94 (309)
T ss_dssp HHHHHHHTCTTEEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESSCC
T ss_pred HHHHHHHhcCCeEEEEecC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecCCC
Confidence 34566778897 6654321 1232222222222 2579999997643 33444555543 467899998754
Q ss_pred HHH-HHHHhhccCCCCceeccCCC-ccHHHHHHhcccC----------CCCCCEEEEeCCCcch-------hhHHHHHHh
Q 022128 139 ASI-FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN----------GKKKCTVLYPASAKAS-------NEIEEGLSN 199 (302)
Q Consensus 139 a~~-l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~----------~~~~~~vL~~rg~~~~-------~~L~~~L~~ 199 (302)
... +... .++.. +..+. ..+..+++.|.+. ....++|+++.|.... .-+.+.|++
T Consensus 95 ~~~~~~~~-----~~~~~-V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 168 (309)
T 2fvy_A 95 SRKALDSY-----DKAYY-VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 168 (309)
T ss_dssp CHHHHHTC-----TTEEE-EECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHH
T ss_pred Cccccccc-----CccEE-EecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHh
Confidence 321 1101 01211 22222 2233344444441 1123478888876432 246678889
Q ss_pred CCCeeEEEeeeeeecCCCCcHHHHHH-cC-----CCCEEEEECcHHHHHHHHHhhhcccCC-CceEEEECHH
Q 022128 200 RGFEVVRLNTYTTEPVHHVDQTVLKQ-AL-----SIPVVAVASPSAVRSSWVNLISDTEQW-SNSVACIGET 264 (302)
Q Consensus 200 ~G~~v~~~~vY~~~~~~~~~~~~~~~-~~-----~~d~ivftS~s~v~~~~~~~l~~~~~~-~~~i~~IG~~ 264 (302)
.|..+....++..........+..+. +. .+++|+..+-..+. .+++.+.+.. . ++.++.++..
T Consensus 169 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~g-~~di~vig~d~~ 238 (309)
T 2fvy_A 169 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM-GAVEALKAHN-KSSIPVFGVDAL 238 (309)
T ss_dssp TTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHH-HHHHHHHHTT-CTTSCEECSBCC
T ss_pred cCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHH-HHHHHHHHcC-CCCceEEecCCC
Confidence 99887655444321111111112222 22 57898888887777 6777776644 3 5677777543
No 32
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=94.28 E-value=0.16 Score=45.41 Aligned_cols=179 Identities=9% Similarity=0.004 Sum_probs=96.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+.. ....+.+.+.+. +++++++|.....
T Consensus 84 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAH---SQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHC---SSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcC---CCCEEEEcCCCCC
Confidence 355677789998876541 1222221222222 2579999997643 223344444442 5788998865421
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. ++.. +..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 156 ----~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 222 (338)
T 3dbi_A 156 ----N------SSHS-VWCDHKQTSFNAVAELINAG--HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 222 (338)
T ss_dssp ----S------GGGE-ECBCHHHHHHHHHHHHHHTT--CCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEChHHHHHHHHHHHHHCC--CCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeC
Confidence 1 2211 12222 23344555665543 3689999886442 2466778889877643333322
Q ss_pred ecCCCCcHHHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
........+..+. ..++++|+.++-..+- .+++.+.+... .++.++.++..
T Consensus 223 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vvg~D~~ 280 (338)
T 3dbi_A 223 KWTPASGAEGVEMLLERGAKFSALVASNDDMAI-GAMKALHERGVAVPEQVSVIGFDDI 280 (338)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHH-HHHHHHHHcCCCCCCCeEEEEECCh
Confidence 1111111112222 2468999888887777 67777766532 35677777644
No 33
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=94.22 E-value=0.13 Score=44.25 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++.+..- .+......++. + .-.++|+|| .+...-...+. . .+++++.+|.... .
T Consensus 26 gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~-l-~~~~vdgiI-~~~~~~~~~~~---~---~~iPvV~~~~~~~---~ 91 (280)
T 3gyb_A 26 SLSDVLTPKGYRLSVIDSL--TSQAGTDPITS-A-LSMRPDGII-IAQDIPDFTVP---D---SLPPFVIAGTRIT---Q 91 (280)
T ss_dssp HHHHHHGGGTCEEEEECSS--SSCSSSCHHHH-H-HTTCCSEEE-EESCC--------------CCCEEEESCCCS---S
T ss_pred HHHHHHHHCCCEEEEEeCC--CchHHHHHHHH-H-HhCCCCEEE-ecCCCChhhHh---h---cCCCEEEECCCCC---C
Confidence 3456677889998877655 21112223333 3 236799999 44433222222 2 5788999987641 0
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 218 (302)
.. ++..........+..+++.|.+.. .++|+++.+... ..-+.+.|++.|..+....++ ....
T Consensus 92 ~~------~~~~V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~----~~~~ 159 (280)
T 3gyb_A 92 AS------THDSVANDDFRGAEIATKHLIDLG--HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL----GPAV 159 (280)
T ss_dssp SC------STTEEEECHHHHHHHHHHHHHHTT--CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC----SCCC
T ss_pred CC------CCCEEEechHHHHHHHHHHHHHCC--CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccccc----CCCC
Confidence 11 332212211223444556666543 468999998754 234667888999876543221 1222
Q ss_pred cH---HHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 219 DQ---TVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 219 ~~---~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.+ +.... ...+++|+.++-..+. .+++.+.+... .++.++.++..-
T Consensus 160 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 160 EHAGYTETLALLKEHPEVTAIFSSNDITAI-GALGAARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEEEESCCH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCeeEEEEECCch
Confidence 21 11222 2468999999888887 77777766542 357788887644
No 34
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.11 E-value=0.13 Score=44.80 Aligned_cols=176 Identities=11% Similarity=0.065 Sum_probs=99.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++....-.- .+.....+.+ .-.+.|+||+.+...-...++.+. .+++++.+|....
T Consensus 32 gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~~----~~iPvV~i~~~~~---- 99 (289)
T 3k9c_A 32 QIYAAATRRGYDVMLSAVAPS---RAEKVAVQAL-MRERCEAAILLGTRFDTDELGALA----DRVPALVVARASG---- 99 (289)
T ss_dssp HHHHHHHHTTCEEEEEEEBTT---BCHHHHHHHH-TTTTEEEEEEETCCCCHHHHHHHH----TTSCEEEESSCCS----
T ss_pred HHHHHHHHCCCEEEEEeCCCC---HHHHHHHHHH-HhCCCCEEEEECCCCCHHHHHHHH----cCCCEEEEcCCCC----
Confidence 455677889998886553211 1111122222 225799999987543333444443 2688999997542
Q ss_pred HHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeecCCC
Q 022128 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (302)
.. ++..........+...++.|.+.. .++|.++.+... ..-+.+.|++.|..+... ++.. ..
T Consensus 100 ~~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~---~~ 167 (289)
T 3k9c_A 100 LP------GVGAVRGDDVAGITLAVDHLTELG--HRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTG---GT 167 (289)
T ss_dssp ST------TSEEEEECHHHHHHHHHHHHHHTT--CCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECC---CS
T ss_pred CC------CCCEEEeChHHHHHHHHHHHHHCC--CCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEEC---CC
Confidence 12 343222211223444556666543 368999988653 234677889999876542 2221 22
Q ss_pred CcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 218 VDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 218 ~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
..+ +..+. + .++++|+.++-..+- ..++.+.+... .++.++.++..
T Consensus 168 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~D~~ 223 (289)
T 3k9c_A 168 TETEGAEGMHTLLEMPTPPTAVVAFNDRCAT-GVLDLLVRSGRDVPADISVVGYDDS 223 (289)
T ss_dssp SHHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEECCH
Confidence 221 12222 2 468999988888777 67777766532 35677777654
No 35
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=94.09 E-value=0.15 Score=45.30 Aligned_cols=211 Identities=15% Similarity=0.137 Sum_probs=113.7
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEE----eC----------h
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIII----TS----------P 111 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~l~~~d~Iif----TS----------~ 111 (302)
.+.||+|++...........+.|.+.|+++.....-+...... .....+..+.+.++|.|+. .. .
T Consensus 4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 3678999999887677788899999999987552111000000 0000011123457888886 21 1
Q ss_pred HH--H-HHHHHHHHHcCCCCceEEEEChhhHH---HHHHHhhccCCCCceeccCCCccHHHHHHhc-------------c
Q 022128 112 EA--G-SVFLEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASEL-------------P 172 (302)
Q Consensus 112 ~a--v-~~f~~~l~~~~~~~~~i~aVG~~Ta~---~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L-------------~ 172 (302)
.- + +.+++. .++.+++++|-..-. ++.+. |+.+...|... +-.++..+ .
T Consensus 84 ~~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~~-~v~~~r~~~~~~g~~~~~~~~~ 151 (300)
T 2rir_A 84 EEVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFERD-DIAIYNSIPTVEGTIMLAIQHT 151 (300)
T ss_dssp SCEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGSH-HHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCCC-ceEEEcCccHHHHHHHHHHHhc
Confidence 11 1 222222 245666668866544 56666 99887666431 11222211 1
Q ss_pred cCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC--------C---cHHHHHHcCCCCEEEEECcHHH-
Q 022128 173 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPSAV- 240 (302)
Q Consensus 173 ~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~~~~~d~ivftS~s~v- 240 (302)
.....+++++++........+...|+..|++| .+|.+.+... . ...+.+.+...|+|+.+.|..+
T Consensus 152 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~i 228 (300)
T 2rir_A 152 DYTIHGSQVAVLGLGRTGMTIARTFAALGANV---KVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSMIL 228 (300)
T ss_dssp SSCSTTSEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSCCB
T ss_pred CCCCCCCEEEEEcccHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChhhh
Confidence 12236889999987777777888999999865 4555432110 0 0112223468899999888533
Q ss_pred -HHHHHHhhhcccCCCceEEEECH----HHHHHHHHcCCCeE
Q 022128 241 -RSSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNV 277 (302)
Q Consensus 241 -~~~~~~~l~~~~~~~~~i~~IG~----~Ta~~l~~~G~~~~ 277 (302)
+ ..++.++. +..++-++. ...+.+++.|...+
T Consensus 229 ~~-~~~~~mk~----g~~lin~a~g~~~~~~~~a~~~G~~~i 265 (300)
T 2rir_A 229 NQ-TVLSSMTP----KTLILDLASRPGGTDFKYAEKQGIKAL 265 (300)
T ss_dssp CH-HHHTTSCT----TCEEEECSSTTCSBCHHHHHHHTCEEE
T ss_pred CH-HHHHhCCC----CCEEEEEeCCCCCcCHHHHHHCCCEEE
Confidence 2 22333322 223333322 11256677788653
No 36
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=94.09 E-value=0.27 Score=42.43 Aligned_cols=181 Identities=10% Similarity=0.008 Sum_probs=95.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+...-...++.+.+. .++++++++.....
T Consensus 42 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~--~~iPvV~~~~~~~~- 113 (296)
T 3brq_A 42 HAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA--HSQPIMVLNRRLRK- 113 (296)
T ss_dssp HHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHT--CSSCEEEESCCCSS-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhc--CCCCEEEEccccCC-
Confidence 345567788998764321 1222222222222 2579999987653222334444441 36789999865321
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. ++.. +..+.+ .+..+++.|.+.. .++|.++.+.... .-+.+.|++.|..+....++...
T Consensus 114 ---~------~~~~-V~~d~~~~~~~a~~~l~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 181 (296)
T 3brq_A 114 ---N------SSHS-VWCDHKQTSFNAVAELINAG--HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGK 181 (296)
T ss_dssp ---S------GGGE-ECCCHHHHHHHHHHHHHHTT--CCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCC
T ss_pred ---C------CCCE-EEEchHHHHHHHHHHHHHCC--CceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 1 2211 222222 2344556665542 4689999887532 24667788888776433233221
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.......+..+. + .++|+|+..+-..+. .+++.+.+... .++.++.++...
T Consensus 182 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 239 (296)
T 3brq_A 182 WTPASGAEGVEMLLERGAKFSALVASNDDMAI-GAMKALHERGVAVPEQVSVIGFDDIA 239 (296)
T ss_dssp SSHHHHHHHHHHHHTC--CCSEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEEEESCCT
T ss_pred CChhHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEeecCch
Confidence 110001112222 2 368999988888777 67777765432 356677776543
No 37
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=94.05 E-value=0.15 Score=44.62 Aligned_cols=204 Identities=15% Similarity=0.120 Sum_probs=110.3
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHH
Q 022128 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (302)
Q Consensus 50 g~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~ 118 (302)
+.+|.+.-+...+ ..+.+.++++|+++.....-.. .+.+...+.++. ..++|+||+.... +....+
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~ 79 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA---NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSL 79 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHH
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc---CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 3455555554322 3345566778988875542100 122222222222 2579999987543 335555
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------- 190 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------- 190 (302)
+.+.+. ++++++++......-... .+.. +..+. ..+..+++.|.+.....++|+++.|....
T Consensus 80 ~~~~~~---giPvV~~~~~~~~~~~~~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~ 149 (297)
T 3rot_A 80 QRANKL---NIPVIAVDTRPKDKTKNP------YLVF-LGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRA 149 (297)
T ss_dssp HHHHHH---TCCEEEESCCCSCTTTSC------CSCE-EECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHH
T ss_pred HHHHHC---CCCEEEEcCCCccccccC------cceE-EccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHH
Confidence 555553 678888886542100000 1211 22222 23344555565554335789999876542
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcH---HHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC----CCceEE
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ----WSNSVA 259 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~---~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~----~~~~i~ 259 (302)
.-+.+.|++.|+.+.... .....+ +.... ..++++|+..+-..+. ..++.+.+... .++.++
T Consensus 150 ~Gf~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~~dv~vi 222 (297)
T 3rot_A 150 YGIKTILQDKGIFFEELD------VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALD-PLGQMLLHPDRYDFNYQPQVY 222 (297)
T ss_dssp HHHHHHHHHTTCEEEEEE------CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHSHHHHTCCCCCEEE
T ss_pred HHHHHHHHhcCCeEEEee------cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchH-HHHHHHHhcCCccCCCceEEE
Confidence 346788899998775432 111211 11222 2468999998888877 77777776532 268888
Q ss_pred EECHHHH--HHHHHcCC
Q 022128 260 CIGETTA--SAAKRLGL 274 (302)
Q Consensus 260 ~IG~~Ta--~~l~~~G~ 274 (302)
.++..-. ..+.. |.
T Consensus 223 g~D~~~~~~~~i~~-~~ 238 (297)
T 3rot_A 223 SFDKTPNTVSLIHK-KL 238 (297)
T ss_dssp EECCCHHHHHHHHT-TS
T ss_pred EeCCCHHHHHHHHc-CC
Confidence 8876443 44443 44
No 38
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=93.95 E-value=0.8 Score=39.51 Aligned_cols=175 Identities=12% Similarity=0.030 Sum_probs=93.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+...-...++.+. .++++++++.....
T Consensus 29 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~~- 98 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCNT-----ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDPL- 98 (285)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCTT-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccCC-
Confidence 345567788998765421 1222222222222 25799999976433223344443 46789999865321
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
. ++.. +..+.+ .+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+. ++...
T Consensus 99 ---~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~ 163 (285)
T 3c3k_A 99 ---S------TVSS-VSIDDVAASEYVVDQLVKSG--KKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYA 163 (285)
T ss_dssp ---S------SSCE-EECCHHHHHHHHHHHHHHTT--CCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEEC
T ss_pred ---C------CCCE-EEEChHHHHHHHHHHHHHcC--CCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecC
Confidence 1 3322 222322 2344555666542 3689999886532 236677888887765 33222
Q ss_pred cCCCCcHHHHHH---c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 214 PVHHVDQTVLKQ---A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 214 ~~~~~~~~~~~~---~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.......+..+. + .++++|+..+-..+. .+++.+.+... .++.++.++..
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vvg~d~~ 222 (285)
T 3c3k_A 164 ENLDYMAGKLATFSLLKSAVKPDAIFAISDVLAA-GAIQALTESGLSIPQDVAVVGFDGV 222 (285)
T ss_dssp SSSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEeCCh
Confidence 212111222222 2 258999988887777 67777765432 24566666543
No 39
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=93.91 E-value=0.16 Score=43.45 Aligned_cols=178 Identities=9% Similarity=0.035 Sum_probs=97.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
..+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+.. .....++.+.+ .+++++++|....
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASS-----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD---KGLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH---TTCCEEEESSCCC
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH---cCCCEEEEccCCC
Confidence 3455677788998876532 1222222222222 2579999998654 11334444544 3678999987542
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+.. ++.
T Consensus 94 ----~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~ 158 (272)
T 3o74_A 94 ----PA------HFCS-VISDDRDASRQLAASLLSSA--PRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQG 158 (272)
T ss_dssp ----TT------TCEE-EEECHHHHHHHHHHHHHTTC--CSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEE
T ss_pred ----cc------ccCE-EEEchHHHHHHHHHHHHHCC--CcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eec
Confidence 11 3322 12222 23444556666543 3689999876542 3456778888865432 221
Q ss_pred eecCCCCcHH----HHHHcC-CCCEEEEECcHHHHHHHHHhhhcccC--CCceEEEECHH
Q 022128 212 TEPVHHVDQT----VLKQAL-SIPVVAVASPSAVRSSWVNLISDTEQ--WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~~----~~~~~~-~~d~ivftS~s~v~~~~~~~l~~~~~--~~~~i~~IG~~ 264 (302)
.........+ ++.... .+++|+.++-..+. .+++.+.+... .++.++.++..
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~vp~di~vvg~d~~ 217 (272)
T 3o74_A 159 EAFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQ-GVFDTLQARPVDSRQLQLGTFGDN 217 (272)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHH-HHHHHHHTSCGGGCCCEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHH-HHHHHHHHcCCCccceEEEEeCCh
Confidence 1111111111 122224 68999998888877 77777766542 45778888754
No 40
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=93.86 E-value=0.13 Score=44.52 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=93.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|+++.... . ..+.+...+.++. -.++|+||+.+...-....+.+.+ ..++++++++....
T Consensus 29 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~--- 98 (289)
T 1dbq_A 29 VEKNCFQKGYTLILGN---A--WNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA--- 98 (289)
T ss_dssp HHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH--TTTSCEEEEECSSC---
T ss_pred HHHHHHHcCCeEEEEc---C--CCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh--ccCCCEEEEccCCC---
Confidence 4456677898876532 1 1232222222222 257999998765422233444443 14678998886431
Q ss_pred HHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. ++...+..+. ..+..+++.|.+.. .++|+++.+... ..-+.+.|++.|..+....++..
T Consensus 99 -~~------~~~~~V~~d~~~~~~~~~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~-- 167 (289)
T 1dbq_A 99 -KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG-- 167 (289)
T ss_dssp -CS------SSCEEEEECHHHHHHHHHHHHHHTT--CCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCC--
T ss_pred -cc------CcCCEEEeCcHHHHHHHHHHHHHCC--CCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeC--
Confidence 11 2111122222 22444556666543 468999987643 23467788888876543222221
Q ss_pred CCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 215 VHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 215 ~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
+...+ +..+. + .++++|+..+-..+. .+++.+.+... .++.++.++...
T Consensus 168 -~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~vP~di~vvg~d~~~ 226 (289)
T 1dbq_A 168 -DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAM-GALCAADEMGLRVPQDVSLIGYDNVR 226 (289)
T ss_dssp -CSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHH-HHHHHHHHTTCCTTTTCEEEEEECCT
T ss_pred -CCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeeCCch
Confidence 11211 12222 2 368999988877777 67777765432 356787776543
No 41
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=93.84 E-value=0.91 Score=39.59 Aligned_cols=213 Identities=12% Similarity=0.039 Sum_probs=107.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|++++.... ..+.+...+.++.+ .+.|+||+.+... ....++.+.+ .++++++++.....
T Consensus 24 i~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 95 (306)
T 2vk2_A 24 AKSEAEKRGITLKIADG-----QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD---AEIPVFLLDRSIDV 95 (306)
T ss_dssp HHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHH---TTCCEEEESSCCCC
T ss_pred HHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHH---CCCCEEEecCCCCC
Confidence 45567788998765421 12222222222222 4689999976542 2334454544 36789998864311
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCC-CCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKK-KCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~-~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
.-... .+.. +..+.+ .+..+++.|.+.... .++|.++.|.... .-+.+.|++.|. +..+.++.
T Consensus 96 ~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~ 167 (306)
T 2vk2_A 96 KDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQS 167 (306)
T ss_dssp SCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEE
T ss_pred CCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEecc
Confidence 00000 1211 222222 234445555544211 3689999876432 235667777775 32222222
Q ss_pred eecCCCCcH---H----HHHHc---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHH--HHHHcCCCe
Q 022128 212 TEPVHHVDQ---T----VLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTAS--AAKRLGLKN 276 (302)
Q Consensus 212 ~~~~~~~~~---~----~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~--~l~~~G~~~ 276 (302)
. ....+ + +++.. ..+++|+.++-..+. .+++.+.+... .++.++.++..-.. .+..-.+..
T Consensus 168 ~---~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~di~vig~D~~~~~~~~~~~p~ltt 243 (306)
T 2vk2_A 168 G---DFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI-GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANA 243 (306)
T ss_dssp C---TTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHTTCCCE
T ss_pred C---CCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHH-HHHHHHHHcCCCCCCCeEEEeecCCHHHHHHHHcCCceE
Confidence 1 22211 1 22222 358999888887777 67777765432 35677777654322 445445555
Q ss_pred EEecCCCChHHHHHHHHHHHH
Q 022128 277 VYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 277 ~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+..+..---...++.+.+.++
T Consensus 244 v~~~~~~~g~~a~~~l~~~i~ 264 (306)
T 2vk2_A 244 SVELTPNMAGPAFDALEKYKK 264 (306)
T ss_dssp EEECCSCCHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHHc
Confidence 444443333444555555554
No 42
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=93.76 E-value=0.36 Score=41.80 Aligned_cols=182 Identities=8% Similarity=0.041 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++....-. .......+.+.+ .-.++|+||+.+...-...++.+.+ .++++++++....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 98 (287)
T 3bbl_A 29 SMVREAGAVNYFVLPFPFSE--DRSQIDIYRDLI-RSGNVDGFVLSSINYNDPRVQFLLK---QKFPFVAFGRSNP---- 98 (287)
T ss_dssp HHHHHHHHTTCEEEECCCCS--STTCCHHHHHHH-HTTCCSEEEECSCCTTCHHHHHHHH---TTCCEEEESCCST----
T ss_pred HHHHHHHHcCCEEEEEeCCC--chHHHHHHHHHH-HcCCCCEEEEeecCCCcHHHHHHHh---cCCCEEEECCcCC----
Confidence 34566778899887654211 011112222333 2367999999764322233444444 3678999987542
Q ss_pred HHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.....
T Consensus 99 ~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~ 169 (287)
T 3bbl_A 99 DW------DFAW-VDIDGTAGTRQAVEYLIGRG--HRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGT 169 (287)
T ss_dssp TC------CCCE-EEECHHHHHHHHHHHHHHHT--CCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSS
T ss_pred CC------CCCE-EEeccHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCC
Confidence 11 3322 22222 22344555565543 3689999876432 2466778888876543223322111
Q ss_pred CCCcHHHHHH-cC-----CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 HHVDQTVLKQ-AL-----SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~~~~~~~~~~-~~-----~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.....+..+. +. .+++|+..+-..+. .+++.+.+... .++.++.++...
T Consensus 170 ~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~vP~di~vig~d~~~ 227 (287)
T 3bbl_A 170 FEVGRAMTLHLLDLSPERRPTAIMTLNDTMAI-GAMAAARERGLTIGTDLAIIGFDDAP 227 (287)
T ss_dssp HHHHHHHHHHHHTSCTTTSCSEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEESCCT
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCCEEEEEECCch
Confidence 1101112222 23 57898888887777 67777765432 356788776543
No 43
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=93.62 E-value=0.32 Score=42.22 Aligned_cols=192 Identities=9% Similarity=0.010 Sum_probs=100.4
Q ss_pred CeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHH---HHhc--CCCccEEEEeChHHHHHHH
Q 022128 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSS---VLNA--DTIFDWIIITSPEAGSVFL 118 (302)
Q Consensus 51 ~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~---~l~~--l~~~d~IifTS~~av~~f~ 118 (302)
.+|.+.-+...+ ..+.+.++++|++++.... . .+.+...+ .++. -.++|+||+.+...-...+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~ 83 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---C--GESTPREQALEAVRFLIGRDCDGVVVISHDLHDEDL 83 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSCHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCCHHHH
Confidence 355555544332 3345567788998765432 1 12111112 2222 2579999997643223334
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------- 190 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------- 190 (302)
+.+.+. ++++++++..... . ++.. +..+. ..+..+++.|.+.. .++|.++.|....
T Consensus 84 ~~l~~~---~iPvV~~~~~~~~----~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~ 147 (290)
T 2rgy_A 84 DELHRM---HPKMVFLNRAFDA----L------PDAS-FCPDHRRGGELAAATLIEHG--HRKLAVISGPFTASDNVERL 147 (290)
T ss_dssp HHHHHH---CSSEEEESSCCTT----S------GGGE-ECCCHHHHHHHHHHHHHHTT--CCSEEEEESCTTCHHHHHHH
T ss_pred HHHhhc---CCCEEEEccccCC----C------CCCE-EEeCcHHHHHHHHHHHHHCC--CceEEEEeCCCCCccHHHHH
Confidence 444443 5789999865421 1 2211 22222 22344556666543 4689999886432
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECH
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGE 263 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~ 263 (302)
.-+.+.|++.|..+....++..........+..+. -..+++|+..+-..+. .+++.+.+... .++.++.++.
T Consensus 148 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~di~vvg~D~ 226 (290)
T 2rgy_A 148 DGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTMAV-SALARFQQLGISVPGDVSVIGYDD 226 (290)
T ss_dssp HHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEeCC
Confidence 23567788888765432233221111101111222 2468999988888777 67777765432 3566777765
Q ss_pred H
Q 022128 264 T 264 (302)
Q Consensus 264 ~ 264 (302)
.
T Consensus 227 ~ 227 (290)
T 2rgy_A 227 D 227 (290)
T ss_dssp C
T ss_pred c
Confidence 4
No 44
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.61 E-value=0.26 Score=44.32 Aligned_cols=177 Identities=8% Similarity=0.049 Sum_probs=95.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.....-....+.+.+ .+++++++|....
T Consensus 91 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~-- 160 (355)
T 3e3m_A 91 SLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQR---ASIPIVEIWEKPA-- 160 (355)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHH---CCSCEEEESSCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEECCccC--
Confidence 455677788998865421 1122222222222 257899999865433344454544 3678888875421
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch--------hhHHHHHHhCCCeeEE-Eeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS--------NEIEEGLSNRGFEVVR-LNTYT 211 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~--------~~L~~~L~~~G~~v~~-~~vY~ 211 (302)
.. ... .+..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+.. +.++.
T Consensus 161 --~~------~~~-~V~~D~~~~~~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 229 (355)
T 3e3m_A 161 --HP------IGH-TVGFSNERAAYDMTNALLARG--FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGA 229 (355)
T ss_dssp --SC------SSE-EEECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESC
T ss_pred --CC------CCC-EEEeChHHHHHHHHHHHHHCC--CCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEec
Confidence 11 221 122232 23344555666543 3679888775432 2366788899987653 22221
Q ss_pred eecCCCCcH---H----HHHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 212 TEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 212 ~~~~~~~~~---~----~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
. ....+ + ++.....+++|+.++-..+- .+++.+.+... .++.++.++..-
T Consensus 230 ~---~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvigfD~~~ 289 (355)
T 3e3m_A 230 P---PLSIEDGVAAAELILQEYPDTDCIFCVSDMPAF-GLLSRLKSIGVAVPEQVSVVGFGNFE 289 (355)
T ss_dssp S---SCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCTTTTCEEECSSCCH
T ss_pred C---CCCHHHHHHHHHHHHcCCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEECChH
Confidence 1 11111 1 12222478999988887777 66677765432 356677666543
No 45
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=93.49 E-value=0.46 Score=40.77 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=92.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|+++..+.. ..+.+...+.++. -.++|+||+.+... ...++.+.+ .+++++.+|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~l~~---~~iPvV~i~~~~~-- 96 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-----NADIEREKTLLRAIGSRGFDGLILQSFSN-PQTVQEILH---QQMPVVSVDREMD-- 96 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCSEEEEESSCC-HHHHHHHHT---TSSCEEEESCCCT--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCCc-HHHHHHHHH---CCCCEEEEecccC--
Confidence 355567788998876432 1222222222222 36799999998776 555555554 4788999987542
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc-hhhHH---HHHHhCCCeeEEEeeeeeecCC
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-SNEIE---EGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~-~~~L~---~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|.++.|... ..... +.+++. + .+...+......
T Consensus 97 --~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~gf~~~-l--~~~~~~~~~~~~ 162 (276)
T 3jy6_A 97 --AC------PWPQ-VVTDNFEAAKAATTAFRQQG--YQHVVVLTSELELSRTRQERYRGILAA-A--QDVDVLEVSESS 162 (276)
T ss_dssp --TC------SSCE-EECCHHHHHHHHHHHHHTTT--CCEEEEEEECSTTCHHHHHHHHHHHTT-C--SEEEEEEECSSS
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHcC--CCeEEEEecCCCCCchHHHHHHHHHHH-H--HhCCcEEEeccc
Confidence 11 3322 22222 23444556666543 468999988764 22222 222221 1 111212111111
Q ss_pred CCc----HHHHHHc---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 217 HVD----QTVLKQA---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 217 ~~~----~~~~~~~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
... ..+.+.+ ..+++|+.++-..+. .+++.+.+... .++.++.++..
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d~~ 219 (276)
T 3jy6_A 163 YNHSEVHQRLTQLITQNDQKTVAFALKERWLL-EFFPNLIISGLIDNQTVTATGFADT 219 (276)
T ss_dssp CCHHHHHHHHHHHHHSSSSCEEEEESSHHHHH-HHSHHHHHSSSCCSSSEEEEEBCCC
T ss_pred cCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHH-HHHHHHHHcCCCCCCcEEEEEECCh
Confidence 111 1122222 468899888888777 67777766532 34567776653
No 46
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.36 E-value=0.18 Score=44.23 Aligned_cols=177 Identities=9% Similarity=-0.018 Sum_probs=97.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.+..- .+.+...+.++ .-.+.|+||+.+...-...++.+.+ .+++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNE---FKVPYLIVGKSL--- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHH---TTCCEEEESCCC---
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHH---cCCCEEEECCCC---
Confidence 3455667789988764321 11111122222 2367999999865433334454544 367899999764
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
... ++.. +..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+.. ++...
T Consensus 117 -~~~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~ 184 (305)
T 3huu_A 117 -NYE------NIIH-IDNDNIDAAYQLTQYLYHLG--HRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS 184 (305)
T ss_dssp -SST------TCCE-EECCHHHHHHHHHHHHHHTT--CCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS
T ss_pred -ccc------CCcE-EEeCHHHHHHHHHHHHHHCC--CCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC
Confidence 111 2322 22232 23444556666543 3679999876542 3466788899988765 33222
Q ss_pred cCCCCc---HHH-HHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHHVD---QTV-LKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~~~---~~~-~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
... .. .++ ++....+++|+..+-..+- ..++.+.+... .++.++.++..-
T Consensus 185 ~~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~vP~di~vig~D~~~ 241 (305)
T 3huu_A 185 MND-LRDFIKQYCIDASHMPSVIITSDVMLNM-QLLNVLYEYQLRIPEDIQTATFNTSF 241 (305)
T ss_dssp HHH-HHHHC--------CCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEESCSH
T ss_pred cHH-HHHHHHHhhhcCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCcceEEEEECCcc
Confidence 111 11 112 2222468999988887777 67777766532 457788887653
No 47
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=93.30 E-value=0.5 Score=41.76 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=115.4
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeC----CCchHHHHHHhcCCCccEEEEe--------------
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNADTIFDWIIIT-------------- 109 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~~~~~l~~~l~~l~~~d~IifT-------------- 109 (302)
+.||+|++.........+.+.|++.|+++.....-..... ...+++. +.+.++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDE---VDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGG---CCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchH---HHHhcCCEEEeccccccCCceeeccc
Confidence 6789999998777777888999999999876532110000 0001121 234578888863
Q ss_pred --ChHHH-HHHHHHHHHcCCCCceEEEEChhhH---HHHHHHhhccCCCCceeccCC-----CccH----HHHHHhc-cc
Q 022128 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATG----KILASEL-PK 173 (302)
Q Consensus 110 --S~~av-~~f~~~l~~~~~~~~~i~aVG~~Ta---~~l~~~~~~~~~G~~~~~~p~-----~~~~----e~L~~~L-~~ 173 (302)
++.-+ +.+++. .++++++++|-..- +++++. |+.+.-.|. ..++ |..+..+ ..
T Consensus 80 ~~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11111 222222 24667777886554 456777 998876653 2222 2222211 11
Q ss_pred --CCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC--------C---cHHHHHHcCCCCEEEEECcHHH
Q 022128 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPSAV 240 (302)
Q Consensus 174 --~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--------~---~~~~~~~~~~~d~ivftS~s~v 240 (302)
....+++++++........+...|+..|++| .+|.+.+... . ...+.+.+...|+|+.+.|...
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~ 225 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALV 225 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCC
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHH
Confidence 1236889999987777778899999999865 4555432110 0 0112222468899999988533
Q ss_pred --HHHHHHhhhcccCCCceEEEEC--H--HHHHHHHHcCCCe
Q 022128 241 --RSSWVNLISDTEQWSNSVACIG--E--TTASAAKRLGLKN 276 (302)
Q Consensus 241 --~~~~~~~l~~~~~~~~~i~~IG--~--~Ta~~l~~~G~~~ 276 (302)
+ ..++.++. +..++-++ + ..-+.+++.|+..
T Consensus 226 i~~-~~l~~mk~----~~~lin~ar~~~~~~~~~a~~~Gv~~ 262 (293)
T 3d4o_A 226 VTA-NVLAEMPS----HTFVIDLASKPGGTDFRYAEKRGIKA 262 (293)
T ss_dssp BCH-HHHHHSCT----TCEEEECSSTTCSBCHHHHHHHTCEE
T ss_pred hCH-HHHHhcCC----CCEEEEecCCCCCCCHHHHHHCCCEE
Confidence 2 23344432 22333332 1 1125667778754
No 48
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.13 E-value=0.41 Score=41.68 Aligned_cols=178 Identities=8% Similarity=0.051 Sum_probs=96.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
..+.+.++++|++++.+..- .+.+ .+.+.+ .-.+.|+||+.....-....+.+.+ .+++++++|....
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMI-KQRMVDAFILLYSKENDPIKQMLID---ESMPFIVIGKPTS 102 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCSEEEESCCCTTCHHHHHHHH---TTCCEEEESCCCS
T ss_pred HHHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHH-HhCCcCEEEEcCcccChHHHHHHHh---CCCCEEEECCCCc
Confidence 34556777889988754321 1111 122222 2367999999765433344454544 3678999986542
Q ss_pred HHHHHHhhccCCCCceecc-CCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeee
Q 022128 140 SIFEEVIQSSKCSLDVAFS-PSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~-p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (302)
.. +.....+ .+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+. ++
T Consensus 103 ~~----------~~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~ 167 (295)
T 3hcw_A 103 DI----------DHQFTHIDNDNILASENLTRHVIEQG--VDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ---II 167 (295)
T ss_dssp SG----------GGGSCEEEECHHHHHHHHHHHHHHHC--CSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE---EE
T ss_pred cc----------cCCceEEecCcHHHHHHHHHHHHHcC--CccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee---EE
Confidence 11 0011122 122 22344555565543 4689999876442 346677889998765 22
Q ss_pred eeecCCCCcHHHHHH----cC---CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 211 TTEPVHHVDQTVLKQ----AL---SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~----~~---~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
..........+..+. .. .+++|+..+-..+. ..++.+.+... .++.++.++..-
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~D~~~ 231 (295)
T 3hcw_A 168 ETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHL-AILSVLYELNIEIPKDVMTATFNDSY 231 (295)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHH-HHHHHHHHTTCCTTTTEEEEEECCSH
T ss_pred eccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEeCChh
Confidence 221111111111222 22 67888877777666 66677766432 356777776543
No 49
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=92.86 E-value=0.52 Score=41.83 Aligned_cols=175 Identities=9% Similarity=0.070 Sum_probs=93.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|++++.... ..+.+...+.++. -.+.|+||+.+...-...++.+.+ .+++++.+|....
T Consensus 85 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 153 (332)
T 2o20_A 85 VDDIASMYKYNMILANS-----DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN---SRTPVVLVGTIDG--- 153 (332)
T ss_dssp HHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHH---HCCCEEEESCCCT---
T ss_pred HHHHHHHcCCEEEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEccccC---
Confidence 44566788998765421 1222222222222 257999999764221223444443 2578999986532
Q ss_pred HHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. ++.. +..+.+ .+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 154 -~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-- 221 (332)
T 2o20_A 154 -DK------EIPS-VNIDYHLAAYQSTKKLIDSG--NKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG-- 221 (332)
T ss_dssp -TS------CSCE-EECCHHHHHHHHHHHHHHTT--CSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECS--
T ss_pred -CC------CCCE-EEeChHHHHHHHHHHHHHCC--CCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC--
Confidence 12 3322 222322 2344556666543 3689999887432 2456788888976643223321
Q ss_pred CCCCcH---HHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQ---TVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~---~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
....+ +..+. + ..+++|+..+-..+- .+++.+.+... .++.++.++..
T Consensus 222 -~~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~disvig~D~~ 277 (332)
T 2o20_A 222 -NYSYEQGKALAERLLERGATSAVVSHDTVAV-GLLSAMMDKGVKVPEDFEIISGANS 277 (332)
T ss_dssp -CCSHHHHHHHHHHHHHTTCCEEEESCHHHHH-HHHHHHHHTTCCTTTTCEEEESSCC
T ss_pred -CCCHHHHHHHHHHHhccCCCEEEECChHHHH-HHHHHHHHcCCCCccCEEEEEeCCh
Confidence 11211 11222 2 278999888887777 67777765432 34567666543
No 50
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=92.73 E-value=0.42 Score=40.76 Aligned_cols=181 Identities=12% Similarity=0.056 Sum_probs=98.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CC-ccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~-~d~IifTS~--~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..+.+.++++|+++.....- ...+.+...+.++.+ .+ +|+||+... ......++.+.+. +++++.+|..
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~---~ipvV~~~~~ 93 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRAR---NIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHC---CCcEEEEecC
Confidence 34556677889988755321 111222212222221 35 999999873 3445555656553 6789999865
Q ss_pred hHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCC--CCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEE
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~--~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~ 206 (302)
.. .. +....+..+. ..+..+++.|.+... ..++|+++.|.... .-+.+.|++. |+.+..
T Consensus 94 ~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 163 (276)
T 3ksm_A 94 LA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA 163 (276)
T ss_dssp CS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE
Confidence 42 11 2212122332 233445555554422 24689999886432 3466777777 766542
Q ss_pred EeeeeeecCCCCcH---HHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 207 LNTYTTEPVHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 207 ~~vY~~~~~~~~~~---~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
++. .....+ +.... ..++++|+.++-..+. .+++.+.+... .++.++.++..-
T Consensus 164 --~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 164 --APY---AGDDRGAARSEMLRLLKETPTIDGLFTPNESTTI-GALVAIRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp --CCB---CCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHH-HHHHHHHHTTCTTSSEEEEESCCH
T ss_pred --Eec---CCCcHHHHHHHHHHHHHhCCCceEEEECCchhhh-HHHHHHHHcCCCCCeEEEEeCCCH
Confidence 111 122221 11222 2478999999888877 77777766543 457788887543
No 51
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=92.71 E-value=1.4 Score=37.58 Aligned_cols=174 Identities=11% Similarity=0.013 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHH-HHHHcCCCCceEEEEChhhH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~-~l~~~~~~~~~i~aVG~~Ta 139 (302)
..+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+.. ...++ .+.+ .+++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~---~~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTD---HHIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHH---C-CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHc---CCCCEEEEeccCC
Confidence 4455677888999875322 1122222222222 2579999998743 22344 4554 3678999987653
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
..- + +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+.. ++.
T Consensus 98 ~~~--~-----------V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~ 160 (277)
T 3e61_A 98 EHN--G-----------ISTNHFKGGQLQAEVVRKGK--GKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM--LEA 160 (277)
T ss_dssp ---------------------HHHHHHHHHHHHHHTT--CCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE--EEG
T ss_pred CCC--e-----------EEechHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--eec
Confidence 221 2 11121 23445556666543 3689999876542 3466788888887765 222
Q ss_pred eecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
.........+.+..-.++++|+..+-..+. .+++.+.+... .++.++.++..
T Consensus 161 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vig~d~~ 215 (277)
T 3e61_A 161 TLLDNDKKFIDLIKELSIDSIICSNDLLAI-NVLGIVQRYHFKVPAEIQIIGYDNI 215 (277)
T ss_dssp GGGGSHHHHHHHHHHHTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCCHHHHHHHhhcCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEeeCCc
Confidence 221111111112222478999999988877 77777766532 34566666543
No 52
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=92.55 E-value=0.58 Score=40.45 Aligned_cols=179 Identities=11% Similarity=0.041 Sum_probs=91.8
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
.+.+.++++|++++.. ..-. .+....+.++..+ -.++|+||+.+...-...++.+.+ .++++++++.....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~-- 100 (290)
T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFDD-- 100 (290)
T ss_dssp HHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC--C--
T ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCCC--
Confidence 3455677889988765 3211 1101112233332 357999998765432333444433 46789999875321
Q ss_pred HHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.+. .+..+. ..+..+++.|.+.. .++|.++.+.... .-+.+.|++.|..+....++..
T Consensus 101 ---------~~~-~V~~D~~~~g~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~-- 166 (290)
T 3clk_A 101 ---------DRP-FISSDDEDIGYQATNLLINEG--HRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPG-- 166 (290)
T ss_dssp ---------CSC-EEECCHHHHHHHHHHHHHTTT--CCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECC--
T ss_pred ---------CCC-EEEeChHHHHHHHHHHHHHcC--CCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcC--
Confidence 111 122222 22344556666542 4689999876432 2466778888876543222221
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
+...+ +..+. + ..+|+|+.++-..+. .+++.+.+... .++.++.++....
T Consensus 167 -~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~~ 225 (290)
T 3clk_A 167 -DYSYTSGEQAMKAFGKNTDLTGIIAASDMTAI-GILNQASSFGIEVPKDLSIVSIDGTEM 225 (290)
T ss_dssp -CSSHHHHHHHHHHHCTTCCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECCTH
T ss_pred -CCChhhHHHHHHHHhccCCCcEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEeCChHH
Confidence 11211 12222 2 368999988888777 67777766432 3567888866543
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=92.37 E-value=1.4 Score=37.84 Aligned_cols=178 Identities=11% Similarity=0.081 Sum_probs=96.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.... .....++.+.+ .+++++++|...
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 99 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATS-----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK---AGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHH---TTCCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---cCCCEEEecCCC
Confidence 3355667788998876532 1222222222222 2579999997543 32244555554 367899998654
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccC--CC---CCCEEEEeCCCcch-------hhHHHHHHhC-CCee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKN--GK---KKCTVLYPASAKAS-------NEIEEGLSNR-GFEV 204 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~--~~---~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v 204 (302)
... . ++.. +..+. ..+..+++.|.+. .. ..++|+++.|.... .-+.+.|++. |+.+
T Consensus 100 ~~~---~------~~~~-V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~ 169 (293)
T 3l6u_A 100 RSD---A------VVSS-ITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSI 169 (293)
T ss_dssp CCT---T------CSEE-EEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred CCC---c------ceeE-EecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEE
Confidence 210 0 2222 22222 2233344445442 21 12389999876542 3566778888 8766
Q ss_pred EEEeeeeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 205 VRLNTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 205 ~~~~vY~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
... +. .....+ +.... + .++++|+.++-..+- .+++.+.+....++.++.++..
T Consensus 170 ~~~--~~---~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 170 VDS--VS---GNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAM-GVLEALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp EEE--EE---CTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCCCEEEEEECC
T ss_pred eee--cc---CCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHH-HHHHHHHhCCCCCeEEEEecCC
Confidence 442 21 122221 11222 2 468999999888887 7777777654336777777544
No 54
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=91.87 E-value=0.37 Score=43.02 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=98.7
Q ss_pred CCeEEEeCCCCCh-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH
Q 022128 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (302)
Q Consensus 50 g~~IlitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~ 122 (302)
.++|.+.-+...+ ..+.+.++++|++++.+..-. . .....+.+.+ .-.++|+||+.+. +.
T Consensus 64 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~--~~~~~~~~~l-~~~~vdGiIi~~~---------~~ 130 (333)
T 3jvd_A 64 SALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-V--QAQDVVMESL-ISIQAAGIIHVPV---------VG 130 (333)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-H--HHHHHHHHHH-HHHTCSEEEECCC---------TT
T ss_pred CCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-h--HHHHHHHHHH-HhCCCCEEEEcch---------HH
Confidence 3456555444332 334456677899887654322 1 0011111222 1247899999887 22
Q ss_pred HcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHH
Q 022128 123 EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEE 195 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~ 195 (302)
.....+++++.+|..... . ++..........+..+++.|.+.. .++|.++.|.... .-+.+
T Consensus 131 ~~~~~~iPvV~~~~~~~~----~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~ 198 (333)
T 3jvd_A 131 SIAPEGIPMVQLTRGELG----P------GFPRVLCDDEAGFFQLTESVLGGS--GMNIAALVGEESLSTTQERMRGISH 198 (333)
T ss_dssp CCC-CCSCEEEECC--------C------CSCEEEECHHHHHHHHHHHHCCSS--SCEEEEEESCTTSHHHHHHHHHHHH
T ss_pred HHhhCCCCEEEECccCCC----C------CCCEEEEChHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHH
Confidence 222357899999975421 2 343222211223445566666543 4689999887542 24567
Q ss_pred HHHhCCCeeEEEeeeeeecCCCCcHHHHHH-c--CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A--LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 196 ~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~--~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.|++.|.. +.++..........+.... + ..+++|+..+-..+- ..++.+.+... .++.++.++..-
T Consensus 199 al~~~g~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvig~D~~~ 270 (333)
T 3jvd_A 199 AASIYGAE---VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMA-GVMRAFTRLNVRVPHDVVIGGYDDPE 270 (333)
T ss_dssp HHHHTTCE---EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHH-HHHHHHHHTTCCTTTTCEEEEESCCG
T ss_pred HHHHCCCC---EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEECChH
Confidence 78888876 2211011111111112222 2 238999998887777 67777766532 357788877554
No 55
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=91.86 E-value=0.74 Score=35.97 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=65.0
Q ss_pred chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHH-----HHHHHHHhhhcccCCCceEEEE
Q 022128 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 189 ~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~-----v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+...+...|+..|++|..+-.. .+. +++.+.. .++|+|.+.+..+ ++ .+.+.+++....++++++=
T Consensus 19 G~~~v~~~l~~~G~~Vi~lG~~--~p~----e~~v~~a~~~~~d~v~lS~~~~~~~~~~~-~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 19 GNKILDHAFTNAGFNVVNIGVL--SPQ----ELFIKAAIETKADAILVSSLYGQGEIDCK-GLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEE--ECH----HHHHHHHHHHTCSEEEEEECSSTHHHHHT-THHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHHHHCCCEEEECCCC--CCH----HHHHHHHHhcCCCEEEEEecCcCcHHHHH-HHHHHHHhcCCCCCEEEEE
Confidence 3456778899999998766552 222 2233222 4788888877543 23 3344454433335778777
Q ss_pred CHH---------HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 262 GET---------TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 262 G~~---------Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
|.. ..+.+++.|+..+ ..+..+..++++.+.+.+.
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~-~~~g~~~~~~~~~l~~~~~ 135 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRV-YAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEE-CCTTCCHHHHHHHHHHHHT
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEE-ECCCCCHHHHHHHHHHHhC
Confidence 753 2556999999874 4666788889988887664
No 56
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=91.75 E-value=0.36 Score=42.83 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=94.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.+.. ..+.+...+.++.+ .++|+||+.+...-...++.+. ..+++++.++....
T Consensus 81 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~---~~~iPvV~~~~~~~-- 150 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSNS-----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELK---KSPVPVVLAASIES-- 150 (332)
T ss_dssp HHHHHHHHHTCEEEEEEC-----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHT---TSSSCEEEESCCCS--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---hCCCCEEEEccccC--
Confidence 344556678998765421 11222222333333 5799999976432222333332 24788999987532
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc-ch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-AS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~-~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|.++.|.. .. .-+.+.|++.|..+....++..
T Consensus 151 --~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 219 (332)
T 2hsg_A 151 --TN------QIPS-VTIDYEQAAFDAVQSLIDSG--HKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG 219 (332)
T ss_dssp --CT------TSCE-EEECHHHHHHHHHHHHHTTT--CSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHCC--CCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 11 2322 12222 22344556666543 36899998875 32 3467788899976643223322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
........+..+. + ..+++|+..+-..+- .+++.+.+... .++.++.++..
T Consensus 220 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvvg~D~~ 277 (332)
T 2hsg_A 220 DYTYDSGIEAVEKLLEEDEKPTAIFVGTDEMAL-GVIHGAQDRGLNVPNDLEIIGFDNT 277 (332)
T ss_dssp CSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHH-HHHHHHHHTTCCHHHHCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCeEEEECChHHHH-HHHHHHHHcCCCCCCCeEEEEECCh
Confidence 1110101112222 2 368999888887777 67677665432 23567777553
No 57
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=91.69 E-value=0.74 Score=39.27 Aligned_cols=181 Identities=12% Similarity=0.062 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++....-.- +....+.++..+ -.++|+||+.+...-...+ ......++++++++....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~---~~~~~~~iPvV~~~~~~~---- 89 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILSL-ARLKRYLENTTL--AYLTDGLILASYDLTERFE---EGRLPTERPVVLVDAQNP---- 89 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCSC-CCCC-----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCT----
T ss_pred HHHHHHHHCCCEEEEEeCCCc-hhhHHHHHHHHH--hCCCCEEEEecCCCCHHHH---HHHhhcCCCEEEEeccCC----
Confidence 345566788998876543110 000111122221 2579999997654322222 222224789999987542
Q ss_pred HHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc-c---h--------hhHHHHHHhCCCeeEEEeee
Q 022128 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A---S--------NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~-~---~--------~~L~~~L~~~G~~v~~~~vY 210 (302)
++. .+..+. ..+..+++.|.+.. .++|.++.|.. . . .-+.+.|++.|..+....++
T Consensus 90 --------~~~-~V~~d~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~ 158 (276)
T 2h0a_A 90 --------RYD-SVYLDNRLGGRLAGAYLARFP--GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLY 158 (276)
T ss_dssp --------TSE-EEEECSHHHHHHHHHHHTTSS--SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEE
T ss_pred --------CCC-EEEEccHHHHHHHHHHHHHcC--CCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHee
Confidence 211 112222 23445666666543 46899998764 3 1 23557788888765432233
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
..........+..+. + ..+++|+..+-..+. .+++.+.+... .++.++.++....
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~~ 220 (276)
T 2h0a_A 159 ITRHSQEGGRLALRHFLEKASPPLNVFAGADQVAL-GVLEEAVRLGLTPGRDVRVLGFDGHPF 220 (276)
T ss_dssp EECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHH-HHHHHHHTTSCTTTTSEEEEEESCCTH
T ss_pred ecCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHH-HHHHHHHHcCCCCCCCeEEEEeCCCch
Confidence 221111111112222 2 247888888877777 67777766432 3466777765543
No 58
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=91.60 E-value=0.24 Score=42.81 Aligned_cols=168 Identities=8% Similarity=-0.005 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh-h
Q 022128 63 GKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-T 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~-T 138 (302)
..+.+.++++|++ ++..+.- .+.+...+.++. -.++|+||+.+ ..+......+++++.+|.. .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~ 96 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANI 96 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCC
T ss_pred HHHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEccccc
Confidence 3455667788998 6543221 122221222222 25799999998 1122222357899999876 3
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeee
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (302)
. .. ++ . +..+. ..+...++.|. . ..++|.++.|.... .-+.+.|++.|..+... ++
T Consensus 97 ~----~~------~~-~-V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~ 160 (277)
T 3hs3_A 97 N----DD------IV-R-IVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ET 160 (277)
T ss_dssp C----SS------SE-E-EEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-EC
T ss_pred C----CC------CE-E-EEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Cc
Confidence 2 11 33 2 22222 23455666666 3 34689999887532 34667889999887665 43
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
..... .+.... + .++++|+..+-..+- ..++.+.+... .++.++.++..
T Consensus 161 ~~~~~----~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 161 PENNP----YISAQSALNKSNQFDAIITVNDLYAA-EIIKEAKRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp CSSCH----HHHHHHHHHTGGGCSEEECSSHHHHH-HHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred cCCch----HHHHHHHHcCCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEeeCCc
Confidence 32211 222222 2 468999888887777 67777766432 34666666543
No 59
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.53 E-value=0.13 Score=46.00 Aligned_cols=179 Identities=10% Similarity=0.053 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.....-....+.+.+ .+++++++|....
T Consensus 89 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~-- 158 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGVT-----DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA---AGIPVVEIMDSDG-- 158 (344)
T ss_dssp HHHHHHTSSSSEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH---CSSCEEEEEECSS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh---CCCCEEEEeCCCC--
Confidence 455566778998854321 1122222222222 257999999865433344455554 3678888864210
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc--c------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~--~------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. +.. .+..+. ..+..+++.|.+.. .++|.++.+.. . ..-+.+.|++.|..+....+|..
T Consensus 159 --~~------~~~-~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 159 --KP------VDA-MVGISHRRAGREMAQAILKAG--YRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp --CC------SSE-EEEECHHHHHHHHHHHHHHHT--CCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred --CC------CCC-EEEECcHHHHHHHHHHHHHCC--CCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 11 221 122222 23344555565543 35788887764 1 12466788899987765555432
Q ss_pred ecCCCCcHH----HHHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 213 EPVHHVDQT----VLKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~~----~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
........+ +++...++++|+.++-..+- ..++.+.+... .++.++.++..
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~vP~disvvg~D~~ 285 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSNDMIAA-GGLLYLLEQGIDIPGQIGLAGFNNV 285 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSBCC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHH-HHHHHHHHcCCCCCCceEEEEECCh
Confidence 111111111 12222478999988887777 66677766432 34566665543
No 60
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=91.37 E-value=0.42 Score=42.63 Aligned_cols=177 Identities=10% Similarity=0.020 Sum_probs=93.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|++++... ...+.+...+.++. -.++|+||+.+...-....+.+.+ ..+++++++|....
T Consensus 80 i~~~a~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~--- 149 (340)
T 1qpz_A 80 VEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA--- 149 (340)
T ss_dssp HHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC---
T ss_pred HHHHHHHcCCEEEEEe-----CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC---
Confidence 4456678899876421 11232222222222 257999999764322223344432 24688999986431
Q ss_pred HHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
.. ++...+..+.+ .+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 150 -~~------~~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-- 218 (340)
T 1qpz_A 150 -KA------DFTDAVIDNAFEGGYMAGRYLIERG--HREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG-- 218 (340)
T ss_dssp -CC------SSSEEEECCHHHHHHHHHHHHHHHT--CCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCC--
T ss_pred -CC------CCCCEEEECHHHHHHHHHHHHHHCC--CCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeC--
Confidence 11 21111222322 2344555565543 3689999886432 2366778888876543222221
Q ss_pred CCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 215 VHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 215 ~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
+...+ +..+. + ..+++|+..+-..+- .+++.+.+... .++.++.++..
T Consensus 219 -~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~-g~~~al~~~G~~vP~disvig~D~~ 276 (340)
T 1qpz_A 219 -DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAM-GALCAADEMGLRVPQDVSLIGYDNV 276 (340)
T ss_dssp -CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECC
T ss_pred -CCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEeECCc
Confidence 11211 12222 2 368999888877777 66777765432 34667776543
No 61
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=90.85 E-value=2.4 Score=39.53 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=97.5
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKE 123 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~ 123 (302)
.+...++||++.+-. +...+.|++.|+ ++...+- . .+.+++.+. +.++|.|++.|..-+. .+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~~---~~~~d~l~v~~~~~i~~~~l~~~-- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIKA---ISSAHIIGIRSRTQLTEEIFAAA-- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHHH---HTTCSEEEECSSCCBCHHHHHHC--
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHHH---ccCCEEEEEcCCCCCCHHHHHhC--
Confidence 344467899998653 556678999998 6654431 1 123444443 4678999887754332 222222
Q ss_pred cCCCCceEE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHH-------hcc-------------cC----
Q 022128 124 AGTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILAS-------ELP-------------KN---- 174 (302)
Q Consensus 124 ~~~~~~~i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~-------~L~-------------~~---- 174 (302)
++++++ +.|-++ -+++++. |+.+.-.|. .+++..++ .+. .|
T Consensus 79 ---p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 79 ---NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp ---TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred ---CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 355554 445555 5677888 998876664 33333222 111 01
Q ss_pred ----CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC--cHHHHHHcCCCCEEEEECcHH
Q 022128 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ----~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~ivftS~s~ 239 (302)
...|+++.++.-..-...+...|+..|.+|..+..+........ ...+-+.+...|+|++.-|.+
T Consensus 149 ~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 12578899997666667789999999987754443322111100 011111234678888877764
No 62
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=90.85 E-value=1 Score=38.62 Aligned_cols=172 Identities=11% Similarity=0.014 Sum_probs=90.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~ 143 (302)
.+.+.++++|++++.+.. . .+.+.. . .. ++|+||+.+...-...++.+.+ .+++++++|....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~--~~~~~~---~-~~-~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~---- 91 (277)
T 3cs3_A 29 GIKKGLALFDYEMIVCSG---K--KSHLFI---P-EK-MVDGAIILDWTFPTKEIEKFAE---RGHSIVVLDRTTE---- 91 (277)
T ss_dssp HHHHHHHTTTCEEEEEES---T--TTTTCC---C-TT-TCSEEEEECTTSCHHHHHHHHH---TTCEEEESSSCCC----
T ss_pred HHHHHHHHCCCeEEEEeC---C--CCHHHH---h-hc-cccEEEEecCCCCHHHHHHHHh---cCCCEEEEecCCC----
Confidence 345567788998764322 1 111100 0 12 7899998765322223344444 4688999986432
Q ss_pred HHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 144 EVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 144 ~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|+++.|.... .-+.+.|++.|..+. ++.....
T Consensus 92 ~~------~~~~-V~~D~~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~ 159 (277)
T 3cs3_A 92 HR------NIRQ-VLLDNRGGATQAIEQFVNVG--SKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFT 159 (277)
T ss_dssp ST------TEEE-EEECHHHHHHHHHHHHHHTT--CSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSS
T ss_pred CC------CCCE-EEeCcHHHHHHHHHHHHHcC--CceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCC
Confidence 11 2221 12222 22344556665543 3689999876432 235677888897765 3321111
Q ss_pred CCCcHHHHHH-cC----CCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 HHVDQTVLKQ-AL----SIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~~~~~~~~~~-~~----~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.....+.... +. .+++|+.++-..+. .+++.+.+... .++.++.++...
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 216 (277)
T 3cs3_A 160 EPSGYAAAKKILSQPQTEPVDVFAFNDEMAI-GVYKYVAETNYQMGKDIRIIGFDNSE 216 (277)
T ss_dssp HHHHHHHHHHHTTSCCCSSEEEEESSHHHHH-HHHHHHTTSSCCBTTTEEEECSSCCH
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEcChHHHH-HHHHHHHHcCCCCCCcEEEEEeCCcH
Confidence 1111112222 22 47888888888777 77777766532 245566665443
No 63
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=90.80 E-value=2.4 Score=33.01 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHH
Q 022128 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-----v~~f~~ 119 (302)
.++|++..+.++ ..-....|+..|++|+++-.. +|. +++.+.... .+.|.|.+++..+ +..+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p~---e~~v~~a~~-~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SPQ---ELFIKAAIE-TKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--ECH---HHHHHHHHH-HTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHh-cCCCEEEEEecCcCcHHHHHHHHH
Confidence 456777665432 234567889999999988662 222 334444422 4578887776432 445566
Q ss_pred HHHHcCCCCceEEEEChhh---------HHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 120 AWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T---------a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.+++.+.+++++++=|..+ .+.+++. |+...+.| ..+....++.|.
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~~~~-g~~~~~~~~~l~ 131 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRVYAP-GTPPEVGIADLK 131 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEECCT-TCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEEECC-CCCHHHHHHHHH
Confidence 7777777678988877642 4458888 99876654 345555555553
No 64
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=90.68 E-value=7.9 Score=36.35 Aligned_cols=201 Identities=11% Similarity=0.069 Sum_probs=112.7
Q ss_pred ChHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTP 127 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~ 127 (302)
+..++.+.|++.|+++..+|=+. ..+..+ ..+.+ +.++.+.+.-+..++.+-....+.|++. +.+
T Consensus 183 d~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP 260 (458)
T 1mio_B 183 DMREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIED-LKDTGNSDLTLSLGSYASDLGAKTLEKKCKVP 260 (458)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHHH-HHTTSSCSEEEEESHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHHH-HHhhccCCEEEEEchhhHHHHHHHHHHHhCCC
Confidence 45789999999999999887432 222111 12333 3467788888888888767777777654 333
Q ss_pred CceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 128 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 128 ~~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
-+.. .-+| ..|.+.|++..+.- |.. +|.... -+.+.+.+.+.. ..|+++++..+..-.-.|...|.+.|
T Consensus 261 ~~~~~~p~G~~~T~~~l~~la~~~--g~~---~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~elG 335 (458)
T 1mio_B 261 FKTLRTPIGVSATDEFIMALSEAT--GKE---VPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELG 335 (458)
T ss_dssp EEEECCCBHHHHHHHHHHHHHHHH--CCC---CCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTT
T ss_pred EEecCCCcCHHHHHHHHHHHHHHH--CCC---chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHCC
Confidence 3333 3445 67777777652111 432 121111 111223332221 16789998888766678889999999
Q ss_pred CeeEEEeeeeeecCCCCcHHHHHH-cCC---CC-EEEEE-CcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCC
Q 022128 202 FEVVRLNTYTTEPVHHVDQTVLKQ-ALS---IP-VVAVA-SPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 275 (302)
Q Consensus 202 ~~v~~~~vY~~~~~~~~~~~~~~~-~~~---~d-~ivft-S~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~ 275 (302)
+++..+.+.. ..+.. .+.++. +.. .+ -|++. ....++ .+ +.+. +..+++-|..-...+++.|+.
T Consensus 336 ~~vv~v~~~~--~~~~~-~~~~~~ll~~~~~~~~~v~~~~d~~~l~-~~---i~~~---~pDl~ig~~~~~~~a~k~gip 405 (458)
T 1mio_B 336 AIPKYVVTGT--PGMKF-QKEIDAMLAEAGIEGSKVKVEGDFFDVH-QW---IKNE---GVDLLISNTYGKFIAREENIP 405 (458)
T ss_dssp CEEEEEEESS--CCHHH-HHHHHHHHHTTTCCSCEEEESCBHHHHH-HH---HHHS---CCSEEEESGGGHHHHHHHTCC
T ss_pred CEEEEEEeCC--CCHHH-HHHHHHHHHhcCCCCCEEEECCCHHHHH-HH---HHhc---CCCEEEeCcchHHHHHHcCCC
Confidence 9886655433 11111 111222 222 34 45554 555455 33 3322 234565666666667778887
Q ss_pred eEE
Q 022128 276 NVY 278 (302)
Q Consensus 276 ~~~ 278 (302)
.+.
T Consensus 406 ~~~ 408 (458)
T 1mio_B 406 FVR 408 (458)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 65
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=90.64 E-value=1.9 Score=33.22 Aligned_cols=63 Identities=6% Similarity=-0.041 Sum_probs=39.5
Q ss_pred CCCCEEEEECcHHHHHHH--HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEecCCCChHHHHHH
Q 022128 227 LSIPVVAVASPSAVRSSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDS 291 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~~~--~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~ 291 (302)
.+.|+++.+.+.... .. ...+++. ....+++ +-++.-.+.++++|...++.|+.-....+++.
T Consensus 70 ~~ad~vi~~~~~~~~-n~~~~~~a~~~-~~~~~iiar~~~~~~~~~l~~~G~d~vi~p~~~~a~~i~~~ 136 (140)
T 3fwz_A 70 ECAKWLILTIPNGYE-AGEIVASARAK-NPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLEL 136 (140)
T ss_dssp GGCSEEEECCSCHHH-HHHHHHHHHHH-CSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHH
T ss_pred ccCCEEEEECCChHH-HHHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHCCCCEEECchHHHHHHHHHH
Confidence 578999988776655 43 2233332 1234444 45888999999999998776655444444443
No 66
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=90.45 E-value=1.3 Score=37.80 Aligned_cols=176 Identities=10% Similarity=0.080 Sum_probs=93.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|++++.... ..+.+.-.+.++. ..+.|+||+.+.. .....++.+.+ .+++++.++....
T Consensus 23 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~i~~~~~- 93 (271)
T 2dri_A 23 AQKEADKLGYNLVVLDS-----QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRQAT- 93 (271)
T ss_dssp HHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS-
T ss_pred HHHHHHHcCcEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEecCCCC-
Confidence 45567778988775321 1222221222222 2569999997643 22233444444 3678999986431
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. +....+..+.+ .+...++.|.+.....++|+++.|.... .-+.+.|++.|+.+... +.
T Consensus 94 ---~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~- 161 (271)
T 2dri_A 94 ---KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QP- 161 (271)
T ss_dssp ---SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EE-
T ss_pred ---CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cC-
Confidence 11 11111222222 2333445555543223689999876432 23667788888765331 11
Q ss_pred ecCCCCcH---HHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 213 EPVHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 213 ~~~~~~~~---~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
.....+ +..+. ...+++|+.++-..+- ..++.+.+....++.++.++..
T Consensus 162 --~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 162 --ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMAL-GALRALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHHTCCSCEEEEEECC
T ss_pred --CCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHH-HHHHHHHHcCCCCcEEEEecCC
Confidence 122221 11222 2468999999988777 7777776654446778877643
No 67
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=90.34 E-value=2.1 Score=34.39 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=67.4
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~ 118 (302)
++++|++..+.++ ..-+...|+..|++|+.+.... + .+.+.+.... .+.|.|.+++. ..+..+.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~--p---~e~lv~aa~~-~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQ--T---PEQVAMAAVQ-EDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBC--C---HHHHHHHHHH-TTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCC--C---HHHHHHHHHh-cCCCEEEEEeechhhHHHHHHHH
Confidence 4667887765432 2456678899999999887652 1 2345555523 56788888775 3456677
Q ss_pred HHHHHcCCCCceEEEEChhhHHH---HHHHhhccCCCCceeccCC
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASI---FEEVIQSSKCSLDVAFSPS 160 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~---l~~~~~~~~~G~~~~~~p~ 160 (302)
+.+++.+.+++++++=|....+. +++. |....+.|.
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~ 129 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPG 129 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTT
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCC
Confidence 77877776679999988766543 5666 987656554
No 68
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=89.89 E-value=3.8 Score=35.43 Aligned_cols=186 Identities=9% Similarity=0.030 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCC---cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 63 GKLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~---~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
..+.+.++++|+ ++... .... ..+.+...+.++. -.+.|.||+++..+...+.. . ..+++++.+|..
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 92 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKID-FMNS--EGDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS----A-TKDLPVIMAAIT 92 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEE-EEEC--TTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH----H-CSSSCEEEESCS
T ss_pred HHHHHHHHHcCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH----c-CCCCCEEEEecc
Confidence 345567888999 65432 1111 1233333333332 35799999998776554322 1 257889888742
Q ss_pred hHHH---HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEe
Q 022128 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 138 Ta~~---l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~ 208 (302)
--.. .... ...+-....+.........++.|.+....-++|.++.+... ...+.+.|++.|+.+....
T Consensus 93 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 169 (295)
T 3lft_A 93 DPIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFA 169 (295)
T ss_dssp CTTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1100 0000 00011111111111233344455444222378998876542 2456778889999887665
Q ss_pred eeeeecCCCCcHHHHHHc-CCCCEEEEECcHHHHHHHHHhhhcc-cCCCceEEEECHH
Q 022128 209 TYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSSWVNLISDT-EQWSNSVACIGET 264 (302)
Q Consensus 209 vY~~~~~~~~~~~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~-~~~~~~i~~IG~~ 264 (302)
++.. ....+..+.+ .++|+|+..+-..+- ..++.+.+. ...+++++.....
T Consensus 170 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~-g~~~~l~~~~~~~~i~vig~d~~ 222 (295)
T 3lft_A 170 VPST----NEIASTVTVMTSKVDAIWVPIDNTIA-SGFPTVVSSNQSSKKPIYPSATA 222 (295)
T ss_dssp ESSG----GGHHHHHHHHTTTCSEEEECSCHHHH-HTHHHHHHHTTTTCCCEEESSHH
T ss_pred cCCH----HHHHHHHHHHHhcCCEEEECCchhHH-HHHHHHHHHHHHcCCCEEeCCHH
Confidence 5431 1222233333 678998888765554 333333222 1235677777653
No 69
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=89.68 E-value=3.8 Score=35.62 Aligned_cols=178 Identities=9% Similarity=0.046 Sum_probs=93.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|+++..+.. ...+.+...+.++. -.++|+||+.... ++...++.+.+ .++++++++.....
T Consensus 22 i~~~~~~~g~~~~~~~~----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 94 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVP----QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE---MGIPVVTLDTDSPD 94 (313)
T ss_dssp HHHHHHHHTCEEEEECC----SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCTT
T ss_pred HHHHHHHcCCEEEEECC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 34556778988764321 01122222222222 1579999986543 22234444444 36789998875321
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. .+.. +..+.. .+..+++.|.+.....++|.++.|.... .-+.+.|++.|+.+.. ++..
T Consensus 95 ---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~ 162 (313)
T 2h3h_A 95 ---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILND 162 (313)
T ss_dssp ---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEEC
T ss_pred ---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecC
Confidence 01 2221 222222 2334445555431124689999886432 3466778888887654 2211
Q ss_pred ecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 213 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
....+ +.... + ..+++|+..+-..+. .+++.+.+... .++.++.++...
T Consensus 163 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 163 ---EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGP-AQALVVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp ---SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHH-HHHHHHHHTTCTTTSEEEEECCCH
T ss_pred ---CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccH-HHHHHHHHcCCCCCeEEEEeCCCH
Confidence 22211 11222 2 367999998877777 66677665432 357788876543
No 70
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=89.61 E-value=0.4 Score=41.76 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+...-. . +......+++++++|......
T Consensus 35 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~---~~~~~~~~iPvV~~~~~~~~~ 105 (301)
T 3miz_A 35 GIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-V---DPESGDVSIPTVMINCRPQTR 105 (301)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-C---CCCCTTCCCCEEEEEEECSST
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH-H---HHHHHhCCCCEEEECCCCCCC
Confidence 356677888998876442 1222222222222 2579999988754322 1 111222478999998654210
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee-
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT- 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~- 212 (302)
. ++.. +..+. ..+...++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++..
T Consensus 106 ---~------~~~~-V~~D~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 106 ---E------LLPS-IEPDDYQGARDLTRYLLERG--HRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp ---T------SSCE-EEECHHHHHHHHHHHHHTTT--CCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred ---C------CCCE-EeeChHHHHHHHHHHHHHcC--CCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 0 1211 12222 23444556666543 3689999876543 3456778888887654444443
Q ss_pred --ecCCCCcH--HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHH
Q 022128 213 --EPVHHVDQ--TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGET 264 (302)
Q Consensus 213 --~~~~~~~~--~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~ 264 (302)
........ +.... + ..+++|+..+-..+. .+++.+.+... .++.++.++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~-g~~~al~~~g~~vP~di~vig~D~~ 235 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAI-QIYIAAMALGLRIPQDVSIVGFDDF 235 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHH-HHHHHHHTTTCCHHHHCEEECSBCC
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHH-HHHHHHHHcCCCCCCCeeEEEeCCc
Confidence 22222212 22222 2 368999998888777 77777776532 23556666543
No 71
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=89.41 E-value=2.2 Score=39.70 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=57.2
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-------HHHHHHHHhhhcccCCCceEEEEC
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSSWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-------~v~~~~~~~l~~~~~~~~~i~~IG 262 (302)
.+.+.+.|.+.|..+..+.+|.... ....++...+.+.+.|+|.||. .+. .|+..+......+.++.++|
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~--~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~-~~l~~l~~~~~~~K~~~~FG 359 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEER--PAISEILKDIPDSEALIFGVSTYEAEIHPLMR-FTLLEIIDKANYEKPVLVFG 359 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCC--CCHHHHHHHSTTCSEEEEEECCTTSSSCHHHH-HHHHHHHHHCCCCCEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCC--CCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHH-HHHHHHHhcccCCCEEEEEE
Confidence 4578889999998886666665432 2334566667899999999985 455 55555544333455666666
Q ss_pred ---------HHHHHHHHHcCCCe
Q 022128 263 ---------ETTASAAKRLGLKN 276 (302)
Q Consensus 263 ---------~~Ta~~l~~~G~~~ 276 (302)
+...+.|++.|++.
T Consensus 360 SyGWsg~a~~~~~~~l~~~~~~~ 382 (410)
T 4dik_A 360 VHGWAPSAERTAGELLKETKFRI 382 (410)
T ss_dssp ECCCCCTTSCCHHHHHTTSSCEE
T ss_pred CCCCCcHHHHHHHHHHHHCCCEE
Confidence 46678888899874
No 72
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=89.31 E-value=0.23 Score=42.97 Aligned_cols=177 Identities=11% Similarity=0.065 Sum_probs=92.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+...-...++.+ .++++++++.....
T Consensus 29 i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~~-- 96 (288)
T 2qu7_A 29 ISHECQKHHLHVAVASS-----EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELES-- 96 (288)
T ss_dssp HHHHHGGGTCEEEEEEC-----TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCSS--
T ss_pred HHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccCC--
Confidence 34456678988764321 1222222222222 2579999997654321111212 46789999865321
Q ss_pred HHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 143 EEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. ++.. +..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+....++.. .
T Consensus 97 --~------~~~~-V~~d~~~~g~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~-~ 164 (288)
T 2qu7_A 97 --T------SLPS-ITVDNEEAAYIATKRVLEST--CKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYS-D 164 (288)
T ss_dssp --C------CCCE-EEECHHHHHHHHHHHHHTSS--CCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEEC-C
T ss_pred --C------CCCE-EEECcHHHHHHHHHHHHHcC--CCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEec-c
Confidence 1 2221 12222 23444556666542 4689999876432 2456778888876543223210 1
Q ss_pred CCC----CcH---HHHHH-c-CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHH
Q 022128 215 VHH----VDQ---TVLKQ-A-LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTA 266 (302)
Q Consensus 215 ~~~----~~~---~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta 266 (302)
.+. ..+ +..+. + .++|+|+.++-..+. .+++.+.+... .++.++.++..-.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~~ 227 (288)
T 2qu7_A 165 QQLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLL-GALQAIKESEKEIKKDVIIVGFDDSYW 227 (288)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHH-HHHHHHHHSSCCBTTTBEEEEESCCTH
T ss_pred CCccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHH-HHHHHHHHhCCCCCCceEEEEeCChHH
Confidence 111 111 11111 2 278999988887777 67777766432 3567888766543
No 73
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=89.05 E-value=4.4 Score=35.50 Aligned_cols=175 Identities=10% Similarity=0.058 Sum_probs=89.9
Q ss_pred HHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 66 IKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 66 ~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.++++ |++++.... ..+.....+.++. -.++|+||+.+.. ++...++.+.+ .++++++++.....
T Consensus 28 ~~~a~~~~g~~l~i~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 99 (325)
T 2x7x_A 28 LREAMFYNGVSVEIRSA-----GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQ---KGIPVILVDRKILS 99 (325)
T ss_dssp HHHHTTSSSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCCSS
T ss_pred HHHHHHcCCcEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 3445567 887764321 1222221122222 2579999997643 22334444444 36789999865311
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY~ 211 (302)
.. .+.. +..+. ..+..+++.|.+.....++|+++.|.... .-+.+.|++. |+.+.. ++.
T Consensus 100 ---~~------~~~~-V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~--~~~ 167 (325)
T 2x7x_A 100 ---DK------YTAY-IGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID--KAD 167 (325)
T ss_dssp ---SC------SSEE-EEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE--EEE
T ss_pred ---cc------eeEE-EecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eec
Confidence 00 1211 22222 23344555555532123689999876432 2356677777 766543 221
Q ss_pred eecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH
Q 022128 212 TEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET 264 (302)
Q Consensus 212 ~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~ 264 (302)
.....+ +.... + ..+++|+.++-..+- .+++.+.+... .++.++.++..
T Consensus 168 ---~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~-g~~~al~~~Gip~dv~vig~D~~ 224 (325)
T 2x7x_A 168 ---AAWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAP-GAYQAAKMAGREKEMIFVGIDAL 224 (325)
T ss_dssp ---CTTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHH-HHHHHHHHTTCTTSSEEEEEECC
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCCCEEEECCCchHH-HHHHHHHHcCCCCCeEEEEECCC
Confidence 122211 11222 2 368999988887777 66666665432 34667776543
No 74
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=88.99 E-value=1.6 Score=38.08 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
..+.+.++++|++++.... ..+.+...+.++. -.++|+||+..... ....++.+.+ .++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ---EGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEECCcC
Confidence 3456677889998876532 1222222222222 25799999987543 2344554544 478999998765
Q ss_pred HHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcc-cCCCCCCEEEEeCCCcch-------hhHHHHHHhC----CCeeE
Q 022128 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELP-KNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVV 205 (302)
Q Consensus 139 a~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~-~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~----G~~v~ 205 (302)
.. . ++...+..+. ..+..+++.|. .. ..++|+++.|.... .-+.+.|++. |+.+.
T Consensus 94 ~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~--G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~ 161 (313)
T 3m9w_A 94 ND----A------DIDFYISFDNEKVGELQAKALVDIV--PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVV 161 (313)
T ss_dssp TT----S------CCSEEEEECHHHHHHHHHHHHHHHC--SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CC----C------CceEEEecCHHHHHHHHHHHHHHhC--CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEE
Confidence 21 2 4422222232 23444556665 33 23589999876543 2345566665 44432
Q ss_pred EEeeeeeecCCCCcH----HHHHHc-CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECH
Q 022128 206 RLNTYTTEPVHHVDQ----TVLKQA-LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGE 263 (302)
Q Consensus 206 ~~~vY~~~~~~~~~~----~~~~~~-~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~ 263 (302)
... |.......... +++... .++++|+.++-..+. .+++.+.+... .++.++.++.
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 162 GDQ-WVDGWLPENALKIMENALTANNNKIDAVVASNDATAG-GAIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp EEE-ECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHH-HHHHHHHTTTCTTTSEECCCSC
T ss_pred eec-cCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHH-HHHHHHHHcCCCCCcEEEecCC
Confidence 221 11111111111 122222 478999999888887 77777776533 2466776653
No 75
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=88.85 E-value=2.7 Score=35.95 Aligned_cols=175 Identities=11% Similarity=0.094 Sum_probs=90.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|++++... ...+.+.-.+.++. -.+.|+||+.+.. .+...++.+.+ .+++++.++....
T Consensus 23 i~~~~~~~g~~~~~~~-----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~- 93 (283)
T 2ioy_A 23 AEEKAKELGYKIIVED-----SQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANS---KNIPVITIDRSAN- 93 (283)
T ss_dssp HHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS-
T ss_pred HHHHHHhcCcEEEEec-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHH---CCCeEEEecCCCC-
Confidence 4456677899876542 11222211122222 2578999987542 22233444444 3578888886421
Q ss_pred HHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEEeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYT 211 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~~vY~ 211 (302)
.. .....+..+.+ .+..+++.|.+.....++|+++.|.... .-+.+.|++. |+.+.. ++.
T Consensus 94 ---~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~--~~~ 162 (283)
T 2ioy_A 94 ---GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA--KQA 162 (283)
T ss_dssp ---SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEE
T ss_pred ---Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--ecc
Confidence 00 11111222222 2344555555542123689999876432 2356777777 765432 221
Q ss_pred eecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 212 TEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 212 ~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
.....+ +..+. + ..+++|+..+-..+- ..++.+.+....++.++.++.
T Consensus 163 ---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 163 ---ADFDRSKGLSVMENILQAQPKIDAVFAQNDEMAL-GAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp ---CTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHH-HHHHHHHHTTCCCCEEEEEEC
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCccEEEECCchHHH-HHHHHHHHCCCCCcEEEEeCC
Confidence 112211 11222 2 368899888877777 677777664434577888764
No 76
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=88.80 E-value=2.5 Score=36.41 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=92.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av-~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
.+.+.++++|++++.... ..+.+...+.++. -.++|+||+.+...- ...++.+ ...++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~---~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIACS-----EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW---ANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT---TTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH---HhCCCCEEEECCccC-
Confidence 344566788998764321 1222222222222 257999999765321 1122222 224788999986432
Q ss_pred HHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.. ++.. +..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|.+.. .++..
T Consensus 112 ---~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~--~~~~~ 177 (293)
T 2iks_A 112 ---RE------HFTS-VVGADQDDAEMLAEELRKFP--AETVLYLGALPELSVSFLREQGFRTAWKDDPREVH--FLYAN 177 (293)
T ss_dssp ---TT------TCEE-EEECHHHHHHHHHHHHHTSC--CSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEE--EEEES
T ss_pred ---cC------CCCE-EEecCHHHHHHHHHHHHHCC--CCEEEEEecCcccccHHHHHHHHHHHHHHcCCCcc--EEEcC
Confidence 12 3322 22222 23344556666543 3689998876432 236677888886322 22221
Q ss_pred ecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 213 EPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 213 ~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
....+ +..+. + ..+++|+.++-..+. .+++.+.+... .++.++.++...
T Consensus 178 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~vP~di~vvg~d~~~ 236 (293)
T 2iks_A 178 ---SYEREAAAQLFEKWLETHPMPQALFTTSFALLQ-GVMDVTLRRDGKLPSDLAIATFGDNE 236 (293)
T ss_dssp ---SSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHH-HHHHHHHHHHSSCCSSCEEEEESCCG
T ss_pred ---CCChhhHHHHHHHHHhcCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCceEEEEECCHH
Confidence 12221 22222 2 258999888888777 66676665431 357788887654
No 77
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.62 E-value=3.4 Score=33.19 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=42.3
Q ss_pred CCCCEEEEECcHHHH-HHHHHhhhcccCCCceE--EEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHH
Q 022128 227 LSIPVVAVASPSAVR-SSWVNLISDTEQWSNSV--ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 227 ~~~d~ivftS~s~v~-~~~~~~l~~~~~~~~~i--~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
.+.|+|+.+.+.... ......++... ....+ .+.++...+.+++.|...++.+..-....|.+.+...+
T Consensus 104 ~~ad~vi~~~~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~~~~a~~l~~~~~~~~ 175 (183)
T 3c85_A 104 GHVKLVLLAMPHHQGNQTALEQLQRRN-YKGQIAAIAEYPDQLEGLLESGVDAAFNIYSEAGSGFARHVCKQL 175 (183)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHcCCCEEEchHHHHHHHHHHHHHHhc
Confidence 578999887764322 03334444322 12333 35678888999999999876666555556666665544
No 78
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=87.80 E-value=1.7 Score=36.50 Aligned_cols=173 Identities=9% Similarity=0.047 Sum_probs=93.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++..+. ..+.+...+.++. -.+.|+||+.+..... .+.+.+ .+++++.+|...
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~--~~~l~~---~~~pvV~~~~~~--- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES-----QFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT--EEMLAH---WQSSLVLLARDA--- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHTTTCCEEEEECCTTCC--TTTSGG---GSSSEEEESSCC---
T ss_pred HHHHHHHHcCCEEEEEeC-----CCcHHHHHHHHHHHHhcCCCEEEEecCcccc--HHHHHh---cCCCEEEEcccc---
Confidence 345567788998775432 1122221222222 3579999998743211 111222 256788888642
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCc-c-------hhhHHHHHHhCCCeeEEEeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~-~-------~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
. ++.. +..+. ..+..+++.|.+.. .++|.++.|.. . ..-+.+.|++.|..+.. ++
T Consensus 90 ---~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~-- 153 (255)
T 1byk_A 90 ---K------GFAS-VCYDDEGAIKILMQRLYDQG--HRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--AL-- 153 (255)
T ss_dssp ---S------SCEE-EEECHHHHHHHHHHHHHHTT--CCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--EC--
T ss_pred ---C------CCCE-EEEccHHHHHHHHHHHHHcC--CCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--ee--
Confidence 1 3322 22222 23444556666543 36899998752 2 12366788889976531 11
Q ss_pred ecCCCCcHH---HHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHH
Q 022128 213 EPVHHVDQT---VLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASA 268 (302)
Q Consensus 213 ~~~~~~~~~---~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~ 268 (302)
.....+. ..+.+ .++++|+.++-..+. .+++.+.+....++.++.++......
T Consensus 154 --~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~-g~~~al~~~g~~di~vig~d~~~~~~ 211 (255)
T 1byk_A 154 --PGLAMKQGYENVAKVITPETTALLCATDTLAL-GASKYLQEQRIDTLQLASVGNTPLMK 211 (255)
T ss_dssp --CCSCHHHHHHHSGGGCCTTCCEEEESSHHHHH-HHHHHHHHTTCCSCEEEEECCCHHHH
T ss_pred --cCCccchHHHHHHHHhcCCCCEEEEeChHHHH-HHHHHHHHcCCCcEEEEEeCCchhhh
Confidence 1222221 11222 368899888887777 67777766544467888887654433
No 79
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=87.67 E-value=7.8 Score=37.17 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEece-------------EEeeeCC--CchHHHHHHhcCCCccEEEEeChHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~--~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
..++|+|.--..-...+++.|.+.|.+++.+.. +...... +.+.|.+ . .+.+++.+|.|....
T Consensus 126 ~~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~-a-~i~~a~~vi~t~~D~ 203 (565)
T 4gx0_A 126 TRGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAG-L-RVAAARSIIANLSDP 203 (565)
T ss_dssp CCSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHH-T-TGGGCSEEEECSCHH
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHh-c-CcccCCEEEEeCCcH
Confidence 356788887666677888888888887765521 1111111 1222322 2 456889999988777
Q ss_pred HHHHHHHHHHcCCCCceEEEEC--hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 114 GSVFLEAWKEAGTPNVRIGVVG--AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 114 v~~f~~~l~~~~~~~~~i~aVG--~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
...+.-...+.-. +.++++.- +...+.|++. |.+..+.|....+..|++.+.
T Consensus 204 ~n~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~ 257 (565)
T 4gx0_A 204 DNANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRAT 257 (565)
T ss_dssp HHHHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhc
Confidence 6654433322222 66776654 5677888888 988666776666666666554
No 80
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=87.65 E-value=7.5 Score=33.64 Aligned_cols=187 Identities=8% Similarity=-0.027 Sum_probs=90.2
Q ss_pred HHHHHHHhCCC----cEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh
Q 022128 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.+.+.++++|+ ++..+ +... ..+.+...+.++.+ .+.|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~---~--~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTA--QGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS---A--TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEEC--TTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH---H--CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh---c--CCCcCEEEEecC
Confidence 35567788898 54321 1111 12333222333222 5799999998776554332 1 357888888742
Q ss_pred hHHHHHHHhhc-cCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeee
Q 022128 138 TASIFEEVIQS-SKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 138 Ta~~l~~~~~~-~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY 210 (302)
--... ....+ ...+-...-+.........++.|.+....-++|.++.+... ...+.+.|++.|+.+....++
T Consensus 100 ~~~~~-~~v~~~~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~ 178 (302)
T 2qh8_A 100 DPVGA-KLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATAL 178 (302)
T ss_dssp CTTTT-TSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CHhhc-CccccccCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEecC
Confidence 11000 00000 00000111111111233333444443223468999877642 245677888999988766554
Q ss_pred eeecCCCCcHHHHHH-cCCCCEEEEECcHHHHHHHHHhhhcc-cCCCceEEEECHH
Q 022128 211 TTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSSWVNLISDT-EQWSNSVACIGET 264 (302)
Q Consensus 211 ~~~~~~~~~~~~~~~-~~~~d~ivftS~s~v~~~~~~~l~~~-~~~~~~i~~IG~~ 264 (302)
.. ....+..+. +.++|+|++.+-..+- ..++.+.+. ...+++++.....
T Consensus 179 ~~----~~~~~~~~~l~~~~dai~~~~D~~a~-g~~~~l~~~~~~~~i~vig~d~~ 229 (302)
T 2qh8_A 179 KS----ADVQSATQAIAEKSDVIYALIDNTVA-SAIEGMIVAANQAKTPVFGAATS 229 (302)
T ss_dssp SG----GGHHHHHHHHGGGCSEEEECSCHHHH-TTHHHHHHHHHHTTCCEEESSHH
T ss_pred Ch----HHHHHHHHHHhccCCEEEECCcHhHH-HHHHHHHHHHHHcCCCEEECCHH
Confidence 21 112222333 3578998888765543 222222211 0135677777654
No 81
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=87.47 E-value=3 Score=39.06 Aligned_cols=192 Identities=9% Similarity=0.066 Sum_probs=106.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceE-EEEC-hhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVG-AGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i-~aVG-~~Ta~ 140 (302)
.++.+.|++.|+++..+|... ..+ .+.++.+.+.-+..++.. ....+.+++.+.+-+.. +-+| ..|.+
T Consensus 198 ~eik~lL~~~Gi~v~~~~~~~-----~~~----ei~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~i~~~~P~G~~~T~~ 267 (437)
T 3aek_A 198 DQCLSLLTQLGVGPVRMLPAR-----RSD----IEPAVGPNTRFILAQPFL-GETTGALERRGAKRIAAPFPFGEEGTTL 267 (437)
T ss_dssp HHHHHHHHHTTCCCEEEESCS-----SGG----GCCCBCTTCEEEESSTTC-HHHHHHHHHTTCEECCCCCSCHHHHHHH
T ss_pred HHHHHHHHHcCCceEEEcCCC-----CHH----HHHhhhcCcEEEEECccH-HHHHHHHHHcCCCeEecCCCcCHHHHHH
Confidence 689999999999999776433 122 133567777777777766 45556665555443333 2366 56777
Q ss_pred HHHHHhhccCCCCceeccCCCc---cHHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHH-HhCCCeeEEEee-eeee
Q 022128 141 IFEEVIQSSKCSLDVAFSPSKA---TGKILASELPKNGK--KKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNT-YTTE 213 (302)
Q Consensus 141 ~l~~~~~~~~~G~~~~~~p~~~---~~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~~~~v-Y~~~ 213 (302)
.|++..+. -|.+.... +.. --+.+...+..... .|+|+.+..+..-.--|...| .+.|++|..+-+ |...
T Consensus 268 ~l~~la~~--~g~~~~~~-e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~elG~~vv~~~~~~~~~ 344 (437)
T 3aek_A 268 WLKAVADA--YGVSAEKF-EAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLARECGMKTTEIATPFLHK 344 (437)
T ss_dssp HHHHHHHH--TTCCHHHH-HHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTTCCEEEEEEESCCCH
T ss_pred HHHHHHHH--HCCChhhH-HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHcCCEEEEEEecCCCH
Confidence 77765211 03322100 000 01112233332211 578999888877777889999 999999877665 2221
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 276 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~ 276 (302)
....+.++.+ ..+..+...+...+ +.+.+.+. +..++.-|...+..+...|+..
T Consensus 345 ---~~~~~~l~~l-~~~~~v~~~~d~~e--~~~~i~~~---~pDliig~~~~~~p~~~~G~P~ 398 (437)
T 3aek_A 345 ---AIMAPDLALL-PSNTALTEGQDLEA--QLDRHEAI---NPDLTVCGLGLANPLEAKGHAT 398 (437)
T ss_dssp ---HHHHHHHTTS-BTTCEEEEECCHHH--HHHHHHHH---CCSEEEECHHHHHHHHTTTCCE
T ss_pred ---HHHHHHHHhc-CCCCEEEeCCCHHH--HHHHHhcc---CCCEEEeCCccccHHHHCCCCE
Confidence 1111122222 23444444433322 22444432 2345556666777888889874
No 82
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=87.11 E-value=1.6 Score=40.01 Aligned_cols=161 Identities=11% Similarity=0.009 Sum_probs=81.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+.+.++++|+++..+..- .+.+.+. .+ .-.+.|+||+.... ....+.+. ..+++++.+|......-..
T Consensus 46 i~~~a~~~g~~~~i~~~~-----~~~~~i~-~l-~~~~vDGiIi~~~~--~~~~~~l~---~~~iPvV~i~~~~~~~~~~ 113 (412)
T 4fe7_A 46 VGEYLQASQSEWDIFIEE-----DFRARID-KI-KDWLGDGVIADFDD--KQIEQALA---DVDVPIVGVGGSYHLAESY 113 (412)
T ss_dssp HHHHHHHHTCCEEEEECC------CC----------CCCSEEEEETTC--HHHHHHHT---TCCSCEEEEEECCSSGGGS
T ss_pred HHHHHHhcCCCeEEEecC-----Cccchhh-hH-hcCCCCEEEEecCC--hHHHHHHh---hCCCCEEEecCCccccccC
Confidence 445566779988766421 1112222 22 22579999995432 22333333 2478899998754211000
Q ss_pred HhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch---------hhHHHHHHhCCCeeEEEeeeeeec
Q 022128 145 VIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 145 ~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~---------~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. ++.. +..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|.....+ ....
T Consensus 114 ~------~~~~-V~~D~~~~g~~a~~~L~~~G--~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~---~~~~ 181 (412)
T 4fe7_A 114 P------PVHY-IATDNYALVESAFLHLKEKG--VNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVY---QGLE 181 (412)
T ss_dssp C------SSEE-EEECHHHHHHHHHHHHHHTT--CCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEE---CCSC
T ss_pred C------CCCE-EEeCHHHHHHHHHHHHHHcC--CceEEEecccccccccHHHHHHHHHHHHHHHcCCCcccc---cccc
Confidence 1 2322 12222 23444556666543 4689999886542 23667788888765322 2111
Q ss_pred C-CCCcH---HH----HHHcCCCCEEEEECcHHHHHHHHHhhhc
Q 022128 215 V-HHVDQ---TV----LKQALSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 215 ~-~~~~~---~~----~~~~~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
. ..... +. +.....+++|+.++-..+. .+++.+.+
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~-g~~~al~~ 224 (412)
T 4fe7_A 182 TAPENWQHAQNRLADWLQTLPPQTGIIAVTDARAR-HILQVCEH 224 (412)
T ss_dssp SSCSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHH-HHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHhCCCCeEEEEEecHHHH-HHHHHHHH
Confidence 1 11111 11 1222578999888887776 66665554
No 83
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=86.93 E-value=7.9 Score=28.89 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=63.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-------------EeeeC--CCchHHHHHHhcCCCccEEEEeChHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~-------------~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av 114 (302)
+|+|+|+-...-...++..|.+.|.++..+-.- ..... .+.+.+.+. .+.++|.|+.+.+..-
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA--GIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT--TTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc--CcccCCEEEEeeCCch
Confidence 567777765444556777777777766544210 01111 111112111 2467899998876542
Q ss_pred -H-HHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 115 -S-VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 115 -~-~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
. .+.......+...+-+.+-++...+.+++. |+...+.|....+..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~~ 135 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLIE 135 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHhc
Confidence 2 223334444433344445667777888887 887667776666666665553
No 84
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=86.92 E-value=1.4 Score=38.82 Aligned_cols=182 Identities=13% Similarity=0.049 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CC--ccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TI--FDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~--~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~ 137 (302)
.+.+.++++|++++.+.. ..+.+...+.++.+ .+ +|+||+..... ....++.+.+ .++++++++..
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 97 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSK---AGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH---HTCEEEEESCC
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEECCC
Confidence 345566788998765421 12222211222221 35 89999876433 3234454544 36789999865
Q ss_pred hHHH-HHHHhhccCCC-Cceec-cCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeE
Q 022128 138 TASI-FEEVIQSSKCS-LDVAF-SPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVV 205 (302)
Q Consensus 138 Ta~~-l~~~~~~~~~G-~~~~~-~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~ 205 (302)
.... ..++ + ..... ..+. ..+..+++.|.+.....++|+++.|.... .-+.+.|++. |+.+.
T Consensus 98 ~~~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 98 PKDLHPWDY------NPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp CTTCCGGGG------TTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCcccchhc------ccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 4210 0000 1 11112 2222 22344555555521123689999876432 2366788888 87765
Q ss_pred EEeeeeeecCCCCcH-------HHHHH-cCCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 206 RLNTYTTEPVHHVDQ-------TVLKQ-ALSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 206 ~~~vY~~~~~~~~~~-------~~~~~-~~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
.. +.. ....+ +++.. ...+++|+.++-..+. .+++.+.+... .++.++.++...
T Consensus 172 ~~--~~~---~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~-g~~~al~~~G~~~di~vvg~D~~~ 234 (332)
T 2rjo_A 172 DF--QVA---DWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMAL-GAIEALRAEGLAGQIPVTGMDGTQ 234 (332)
T ss_dssp EE--EEC---TTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHH-HHHHHHHHTTCBTTBCEECSBCCH
T ss_pred ee--ccC---CCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHH-HHHHHHHHcCCCCCCEEEeecCCH
Confidence 42 211 22211 12222 2257888888887777 67777766432 256677665543
No 85
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=86.84 E-value=5.7 Score=30.21 Aligned_cols=119 Identities=17% Similarity=0.175 Sum_probs=59.3
Q ss_pred ccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE
Q 022128 157 FSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV 234 (302)
Q Consensus 157 ~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf 234 (302)
++....-+..+++.|.+. |.+|.++.-+ +.-.+.+.+.|+.+. . -+....+.++.+ .+.|+|++
T Consensus 11 I~G~G~iG~~la~~L~~~---g~~V~~id~~---~~~~~~~~~~~~~~~-----~---gd~~~~~~l~~~~~~~~d~vi~ 76 (141)
T 3llv_A 11 VIGSEAAGVGLVRELTAA---GKKVLAVDKS---KEKIELLEDEGFDAV-----I---ADPTDESFYRSLDLEGVSAVLI 76 (141)
T ss_dssp EECCSHHHHHHHHHHHHT---TCCEEEEESC---HHHHHHHHHTTCEEE-----E---CCTTCHHHHHHSCCTTCSEEEE
T ss_pred EECCCHHHHHHHHHHHHC---CCeEEEEECC---HHHHHHHHHCCCcEE-----E---CCCCCHHHHHhCCcccCCEEEE
Confidence 333444555666666543 3445544322 222344455553321 1 122223334333 57899888
Q ss_pred ECcHHHHHHH--HHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHH
Q 022128 235 ASPSAVRSSW--VNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVD 290 (302)
Q Consensus 235 tS~s~v~~~~--~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~ 290 (302)
+.++... .. ...+++.....+.+.+-++.-.+.+++.|...++.|..-....+.+
T Consensus 77 ~~~~~~~-n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~~~~~~~l~~ 133 (141)
T 3llv_A 77 TGSDDEF-NLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFMD 133 (141)
T ss_dssp CCSCHHH-HHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHH
T ss_pred ecCCHHH-HHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECHHHHHHHHHHH
Confidence 8775433 22 2223332211223334577778899999999877665443343433
No 86
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=86.44 E-value=7.7 Score=34.39 Aligned_cols=175 Identities=11% Similarity=0.054 Sum_probs=89.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+.++++|++++.+.. ..+.+...+.++. -.++|+||+.+...-...++.+.+ .++++++++.....
T Consensus 88 i~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~-- 157 (348)
T 3bil_A 88 IQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK---QGMPVVLVDRELPG-- 157 (348)
T ss_dssp HHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH---C-CCEEEESSCCSC--
T ss_pred HHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEEcccCCC--
Confidence 44566788998875432 1222222222222 257899998765433334444544 36789999864321
Q ss_pred HHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeeecC
Q 022128 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (302)
Q Consensus 143 ~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~~~ 215 (302)
.. ++..........+..+++.|.+.. .++|.++.|.... .-+.+.|++.|.+.. + ++. .
T Consensus 158 -~~------~~~~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~-v~~---~ 223 (348)
T 3bil_A 158 -DS------TIPTATSNPQPGIAAAVELLAHNN--ALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQ-L-VFL---G 223 (348)
T ss_dssp -C-------CCCEEEEECHHHHHHHHHHHHHTT--CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCC-E-EEC---C
T ss_pred -CC------CCCEEEeChHHHHHHHHHHHHHCC--CCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCcc-E-EEc---C
Confidence 01 232211111122344556666543 3689999887432 246677888886322 1 221 1
Q ss_pred CCCcH---HHHHH-c--CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 216 HHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 216 ~~~~~---~~~~~-~--~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
+...+ +..+. + ..+ +|+..+-..+- .+++.+.+... .++.++.++..-
T Consensus 224 ~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~-g~~~al~~~G~~vP~disvvG~D~~~ 280 (348)
T 3bil_A 224 GYEQSVGFEGATKLLDQGAK-TLFAGDSMMTI-GVIEACHKAGLVIGKDVSVIGFDTHP 280 (348)
T ss_dssp CSSHHHHHHHHHHHHHTTCS-EEEESSHHHHH-HHHHHHHHTTCCBTTTBEEEEESCCG
T ss_pred CCCHHHHHHHHHHHHcCCCC-EEEEcChHHHH-HHHHHHHHcCCCCCCCeEEEEeCCcH
Confidence 12211 12222 2 236 77666766666 66666665432 356677776543
No 87
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=86.37 E-value=3.3 Score=35.59 Aligned_cols=191 Identities=9% Similarity=0.020 Sum_probs=94.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|+++..+- . ...+.+...+.++.+ .++|+||+.+.. .....++.+.+ .++++++++....
T Consensus 25 g~~~~~~~~g~~~~~~~---~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~ 97 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG---P-SSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD---AGIVVLTNESPGQ 97 (303)
T ss_dssp HHHHHHHHTTEEEEEEC---C-SSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHH---TTCEEEEESCTTC
T ss_pred HHHHHHHHcCCEEEEEC---C-CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 34556778897765321 0 111222222222222 579999987543 33334444444 3688999986510
Q ss_pred HHHHHHhhccCCCCceeccCCC-ccHHHHHHhccc-CCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeee
Q 022128 140 SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPK-NGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~-~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY 210 (302)
... ++.. +..+. ..+..+++.|.+ .. ..++++++.|.... .-+.+.|++.|..+..+..+
T Consensus 98 ---~~~------~~~~-v~~d~~~~g~~a~~~l~~~~g-~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~ 166 (303)
T 3d02_A 98 ---PSA------NWDV-EIIDNEKFAAEYVEHMAKRMG-GKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTRR 166 (303)
T ss_dssp ---TTC------SEEE-ESSCHHHHHHHHHHHHHHHTT-TCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSSC
T ss_pred ---CCC------ceEE-EecCHHHHHHHHHHHHHHHhC-cCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEee
Confidence 111 2221 12222 233445556655 32 11289988876432 23456666655333322211
Q ss_pred eeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHH--HHHHHHHcCCC
Q 022128 211 TTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGET--TASAAKRLGLK 275 (302)
Q Consensus 211 ~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~--Ta~~l~~~G~~ 275 (302)
. ......+ +.... + .++++|+.++-..+. .+++.+++... .++.++.++.. ..+.+.+-.+.
T Consensus 167 ~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~lt 238 (303)
T 3d02_A 167 M--PVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPI-GAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDIT 238 (303)
T ss_dssp B--SCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHH-HHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTSSC
T ss_pred c--CCCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchh-HHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCCeE
Confidence 0 1112211 11222 2 357888888866666 66676665433 25778888653 45666644454
No 88
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=86.12 E-value=2.7 Score=32.89 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=58.7
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeec-------------CCCCcHHHHHH--cCCCCEEEEECcHHHH-
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-------------VHHVDQTVLKQ--ALSIPVVAVASPSAVR- 241 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~-------------~~~~~~~~~~~--~~~~d~ivftS~s~v~- 241 (302)
+.+|+++.+..-...+...|.+.|++|.-+.--.... .+....+.+.. +...|+|+.+.+....
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~ 98 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTN 98 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHH
Confidence 4677777665555667777777777654332211000 00011122222 3468888888765332
Q ss_pred HHHHHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEecCCCChHHHHHHH
Q 022128 242 SSWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSI 292 (302)
Q Consensus 242 ~~~~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i 292 (302)
......++... ....++ +-++...+.++++|.. ++.|.......+.+.|
T Consensus 99 ~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~~~~a~~l~~~l 149 (155)
T 2g1u_A 99 FFISMNARYMF-NVENVIARVYDPEKIKIFEENGIK-TICPAVLMIEKVKEFI 149 (155)
T ss_dssp HHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTTTCE-EECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCc-EEcHHHHHHHHHHHHH
Confidence 02333333311 123333 4577888889999998 6655544444444333
No 89
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=85.84 E-value=4.4 Score=30.50 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=37.2
Q ss_pred CCCCEEEEECcHH--HHHHHHHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 227 LSIPVVAVASPSA--VRSSWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 227 ~~~d~ivftS~s~--v~~~~~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
.+.|+|+.+.+.. ........+++... . +++ +-++...+.++++|...++.|.......|.+.+.
T Consensus 69 ~~~d~vi~~~~~~~~~~~~~~~~~~~~~~-~-~ii~~~~~~~~~~~l~~~g~~~vi~p~~~~~~~l~~~~~ 137 (144)
T 2hmt_A 69 RNFEYVIVAIGANIQASTLTTLLLKELDI-P-NIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLS 137 (144)
T ss_dssp GGCSEEEECCCSCHHHHHHHHHHHHHTTC-S-EEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHHHHHcCC-C-eEEEEeCCHHHHHHHHHcCCCEEECccHHHHHHHHHHHh
Confidence 5789988888753 22022233333222 2 444 4467777889999998876555444444544443
No 90
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=85.57 E-value=7.1 Score=33.94 Aligned_cols=167 Identities=10% Similarity=-0.010 Sum_probs=82.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
-+.+.++++|++++.+.. ..+.+...+.++.+ .++|.||+++..--..+.+ +. ...++++++.++....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~-~~~p~~p~v~id~~~~-- 98 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEEG-----VNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IH-NQYPDVHFVSFNGEVK-- 98 (296)
T ss_dssp HHHHHHHHSCCEEEEECC-----CCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TT-TSCTTSEEEEESCCCC--
T ss_pred HHHHHHHHhCCeEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HH-HHCCCCEEEEEecCcC--
Confidence 455667788988764321 11212222233222 5799999998654333222 11 1235789999986421
Q ss_pred HHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcc---hhhHHHHHHhCCCeeEEEeeeeeecCCCC
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~---~~~L~~~L~~~G~~v~~~~vY~~~~~~~~ 218 (302)
.. .+.. +..+.+.+.-++-.+..+..+.++|.++.|... ..-+.+.+++.|.+ ....+|........
T Consensus 99 --~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 99 --GE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp --SS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred --CC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 11 2222 222333333333222211112478999987542 23466788888876 44444532211111
Q ss_pred -cHHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhc
Q 022128 219 -DQTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 219 -~~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
..+..+. + ..+|+|+..+-..+- ..++.+++
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~-Gv~~a~~e 202 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHV-PVVEAIKD 202 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHH-HHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCH-HHHHHHHH
Confidence 1112222 2 368988887776655 45555544
No 91
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=85.45 E-value=9.3 Score=28.26 Aligned_cols=110 Identities=22% Similarity=0.218 Sum_probs=66.6
Q ss_pred CCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccC
Q 022128 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQ 253 (302)
Q Consensus 177 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~ 253 (302)
.+.+||++..+.. +..|.+.|...|+.|. .+. ...+.+..+ ..+|+|++......+ +++.+.+.
T Consensus 17 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~al~~l~~~~~dlvi~~~~~g~~--~~~~l~~~-- 83 (137)
T 2pln_A 17 GSMRVLLIEKNSVLGGEIEKGLNVKGFMAD---VTE------SLEDGEYLMDIRNYDLVMVSDKNALS--FVSRIKEK-- 83 (137)
T ss_dssp TCSEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------CHHHHHHHHHHSCCSEEEECSTTHHH--HHHHHHHH--
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCcEEE---EeC------CHHHHHHHHHcCCCCEEEEcCccHHH--HHHHHHhc--
Confidence 4578999877654 5778888998887553 111 112222222 478988833333333 44555443
Q ss_pred C-CceEEEECH----HHHHHHHHcCCCeEEecCCC-ChHHHHHHHHHHHHccC
Q 022128 254 W-SNSVACIGE----TTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALREHG 300 (302)
Q Consensus 254 ~-~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~-~~~~ll~~i~~~~~~~~ 300 (302)
. ..++++++. .....+.+.|... ++.+.. +.+.|.+.|...++.+.
T Consensus 84 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~~l~~~i~~~~~~~~ 135 (137)
T 2pln_A 84 HSSIVVLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRFWG 135 (137)
T ss_dssp STTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCSCHHHHHHHHHHHTC---
T ss_pred CCCccEEEEeCCCCHHHHHHHHHcCCce-eeeCCCCCHHHHHHHHHHHHhhhc
Confidence 3 466666643 3455566788875 556666 89999999988876543
No 92
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=85.41 E-value=7.1 Score=29.59 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH---------HHHHHHHHhhhcccCCCceEEEE
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS---------AVRSSWVNLISDTEQWSNSVACI 261 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s---------~v~~~~~~~l~~~~~~~~~i~~I 261 (302)
+.+.+.|.+.|++|+.+.+-+. .. ..+.+.|.|+|-||. .++ .|++.+... ..+.+++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~-----~~----~~l~~~d~iiig~pty~~g~~p~~~~~-~fl~~l~~~-l~~k~~~~f 85 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV-----NI----DELLNEDILILGCSAMTDEVLEESEFE-PFIEEISTK-ISGKKVALF 85 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC-----CH----HHHTTCSEEEEEECCBTTTBCCTTTHH-HHHHHHGGG-CTTCEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC-----CH----HHHhhCCEEEEEcCccCCCCCChHHHH-HHHHHHHhh-cCCCEEEEE
Confidence 3566677788877654444221 11 134678888888772 578 788777542 223344433
Q ss_pred C----------HHHHHHHHHcCCCe----EEecCCCChHHHHHHHHHHHH
Q 022128 262 G----------ETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 262 G----------~~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~~~ 297 (302)
| ....+.|++.|++. +.+-..|+.++ +.+.++.+
T Consensus 86 ~t~g~~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d--~~~~~~~~ 133 (138)
T 5nul_A 86 GSYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAE--QDCIEFGK 133 (138)
T ss_dssp EEESSSCSHHHHHHHHHHHHTTCEECSCCEEEESSCGGGH--HHHHHHHH
T ss_pred EecCCCCChHHHHHHHHHHHCCCEEECCceEEecCCCHHH--HHHHHHHH
Confidence 2 33445566778864 33446677776 66666543
No 93
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=85.32 E-value=8.4 Score=29.21 Aligned_cols=116 Identities=14% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeC--CCchHHHHHHhcCCCccEEEEeChHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQG--PDTDRLSSVLNADTIFDWIIITSPEAG 114 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av 114 (302)
.+++|+|+-...-...+++.|.+.|++++.+-.- ..... .+.+.+.+ . .+.++|.||.+.++--
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRS-L-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHH-S-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHh-C-CcccCCEEEEecCCHH
Confidence 3567888876545667888888888887755321 11111 12222222 1 3467899999887532
Q ss_pred HH--HHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 115 SV--FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 115 ~~--f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.. ....+++.+...+-.-+-++.-.+.+++. |.+..+.|....+..++..+.
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 22 22334444422222334455556788888 988767777667777766553
No 94
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=85.12 E-value=6.6 Score=33.44 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.+.++++|++++.... ..+.+...+.++. ..++|+||+.+.. .....++.+.+ .++++++++....
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 94 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIFDS-----QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKE---AGIPVFCVDRGIN 94 (290)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEeCC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 345567788998764321 1222221122222 2579999987543 22233444444 3678999986532
Q ss_pred HHHHHHhhccCCCCcee-ccCCCc-cHHHHHHhcccCCC----CCCE--EEEeCCCcch-------hhHHHHHHhC-CCe
Q 022128 140 SIFEEVIQSSKCSLDVA-FSPSKA-TGKILASELPKNGK----KKCT--VLYPASAKAS-------NEIEEGLSNR-GFE 203 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~-~~p~~~-~~e~L~~~L~~~~~----~~~~--vL~~rg~~~~-------~~L~~~L~~~-G~~ 203 (302)
.. +.... +..+.+ .+..+++.|.+... .-++ |+++.|.... .-+.+.|++. |..
T Consensus 95 ----~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~ 164 (290)
T 2fn9_A 95 ----AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK 164 (290)
T ss_dssp ----CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE
T ss_pred ----CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE
Confidence 11 21111 222222 23444455554310 1245 8888775432 2356677777 766
Q ss_pred eEEEeeeeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH
Q 022128 204 VVRLNTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET 264 (302)
Q Consensus 204 v~~~~vY~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~ 264 (302)
+.. ++.. ....+ +..+. + .++++|+..+-..+. .+++.+.+....++.++.++..
T Consensus 165 ~~~--~~~~---~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~-g~~~al~~~g~~dv~vig~d~~ 226 (290)
T 2fn9_A 165 MVA--QQSA---EFDRDTAYKVTEQILQAHPEIKAIWCGNDAMAL-GAMKACEAAGRTDIYIFGFDGA 226 (290)
T ss_dssp EEE--EEEC---TTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCTTCEEECCBCC
T ss_pred EEE--eccC---CCCHHHHHHHHHHHHHhCCCCcEEEECCchHHH-HHHHHHHHCCCCCeEEEEeCCC
Confidence 533 2221 12211 12222 2 368999988888777 6777776643335677776543
No 95
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=84.76 E-value=3 Score=31.48 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhc--CCCccEEEEeChHH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA 113 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a 113 (302)
+.+++|+|+-...-...++..|.+.|+++..+-.- ..... |.... +.+.. +.++|.||.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~-d~~~~-~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIA-NATEE-NELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEEC-CTTCH-HHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEe-CCCCH-HHHHhcCCCCCCEEEECCCCc
Confidence 34677888887555667888888888876654210 11111 11111 12222 35688998888753
Q ss_pred --HH-HHHHHHHHcCCCCceEE--EEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 114 --GS-VFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 114 --v~-~f~~~l~~~~~~~~~i~--aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
.. .....+.+.+.. +++ +-++...+.+++. |....+.|....+..|++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHH
Confidence 22 233344455543 444 4445555677777 88766666666666666554
No 96
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=84.68 E-value=1.4 Score=39.11 Aligned_cols=175 Identities=11% Similarity=0.022 Sum_probs=90.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.... ..+.+...+.++. -.+.|+||+.+...-....+.+.+ .+++++.+|....
T Consensus 83 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 152 (339)
T 3h5o_A 83 GIETVLDAAGYQMLIGNS-----HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ---HALPVVYMMDLAD-- 152 (339)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH---TTCCEEEEESCCS--
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeecCC--
Confidence 455677888998764321 1222222222222 257999999875443344444544 3577888875321
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
. +.. .+..+. ..+..+++.|.+.. .++|.++.+... ..-+.+.|++.|.......++. .
T Consensus 153 ---~------~~~-~V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~--~ 218 (339)
T 3h5o_A 153 ---D------GRC-CVGFSQEDAGAAITRHLLSRG--KRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLD--P 218 (339)
T ss_dssp ---S------SCC-EEECCHHHHHHHHHHHHHHTT--CCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEE--C
T ss_pred ---C------CCe-EEEECHHHHHHHHHHHHHHCC--CCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEe--c
Confidence 1 111 122232 22344555665543 367988877642 1236677888887321111111 1
Q ss_pred CCCCcH---HHHHH----cCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECH
Q 022128 215 VHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGE 263 (302)
Q Consensus 215 ~~~~~~---~~~~~----~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~ 263 (302)
.....+ +..+. ...+++|+..+-..+- ..++.+.+... .++.++.++.
T Consensus 219 ~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvvgfD~ 276 (339)
T 3h5o_A 219 QPSSMQMGADMLDRALAERPDCDALFCCNDDLAI-GALARSQQLGIAVPERLAIAGFND 276 (339)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSBC
T ss_pred CCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHH-HHHHHHHHcCCCCCCCEEEEEECC
Confidence 122211 12222 2478999888877777 66677665432 3455665543
No 97
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=84.47 E-value=6.1 Score=30.62 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=32.0
Q ss_pred cCCCCEEEEECcHHHHHHH-H-HhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEec
Q 022128 226 ALSIPVVAVASPSAVRSSW-V-NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 226 ~~~~d~ivftS~s~v~~~~-~-~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~ 280 (302)
+.+.|+|+.+.+.... +. . ...++. ....+++ +-++.-.+.++++|...++.|
T Consensus 69 i~~ad~vi~~~~~d~~-n~~~~~~a~~~-~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p 125 (153)
T 1id1_A 69 IDRCRAILALSDNDAD-NAFVVLSAKDM-SSDVKTVLAVSDSKNLNKIKMVHPDIILSP 125 (153)
T ss_dssp TTTCSEEEECSSCHHH-HHHHHHHHHHH-TSSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred hhhCCEEEEecCChHH-HHHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHcCCCEEEcH
Confidence 4688988888765443 32 2 222222 1123444 457888888999999876543
No 98
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=84.40 E-value=8.2 Score=38.78 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=71.5
Q ss_pred CCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHHH
Q 022128 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~~ 245 (302)
..+|++-+-.. +...+...|+..|++|..+.+ ...++++.+.. .+.|+|.+.|.. .+. .+.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~-~vi 676 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL------FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVP-ELI 676 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT------TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHH-HHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHH-HHH
Confidence 34676654433 345677899999998854322 23344444443 589999998844 233 344
Q ss_pred HhhhcccCCCceEEEEC--HHH-HHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 246 NLISDTEQWSNSVACIG--ETT-ASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~IG--~~T-a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+.+++....++++++=| |.. .+.+++.|+..++ ....+..++++.+.+.+.
T Consensus 677 ~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f-~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 677 KELNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVF-GPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEE-CTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEe-CCCCCHHHHHHHHHHHHH
Confidence 55554433356666655 443 7789999999865 444588888888888774
No 99
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=84.30 E-value=3.3 Score=32.33 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=68.6
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-------------EeeeCCCchHHHHHHhc--CCCccEEEEeC
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQGPDTDRLSSVLNA--DTIFDWIIITS 110 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~-------------~~~~~~~~~~l~~~l~~--l~~~d~IifTS 110 (302)
....+++|+|.-...-...++..|.+.|+++..+-.- .... .+.... ..+.. +.++|.||.+.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~-~d~~~~-~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVV-GDAAEF-ETLKECGMEKADMVFAFT 92 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEE-SCTTSH-HHHHTTTGGGCSEEEECS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEE-ecCCCH-HHHHHcCcccCCEEEEEe
Confidence 5677899999987555677889999999887765211 0110 111111 12222 45689999887
Q ss_pred hHHH--HHHHHHHHHcCCCCceE--EEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 111 PEAG--SVFLEAWKEAGTPNVRI--GVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 111 ~~av--~~f~~~l~~~~~~~~~i--~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
++.. ......+.... ...++ .+-++...+.+++. |.. .+.|....+..|++.|.
T Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 93 NDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFII 150 (155)
T ss_dssp SCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHh
Confidence 7532 22233333312 23344 34566777788887 888 67777666777766654
No 100
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=84.00 E-value=5.1 Score=33.25 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=67.3
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~ 118 (302)
.+.+|++.-+.++ ..-+...|+.+|++|+.+..- .| .+.+.+.+.. .+.|.|.+++.. .++.+.
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~--vp---~~~l~~~~~~-~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVD--IE---PGKFVEAVKK-YQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSS--BC---HHHHHHHHHH-HCCSEEEEECCSGGGTHHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEeccccccHHHHHHHH
Confidence 3557777765543 244667889999999988741 21 2445555522 467888887743 356667
Q ss_pred HHHHHcCC-CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHH
Q 022128 119 EAWKEAGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (302)
Q Consensus 119 ~~l~~~~~-~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~ 169 (302)
+.+++.+. +++++++-|....+.+.+.+ |... +.++...+-.+++
T Consensus 161 ~~l~~~~~~~~~~v~vGG~~~~~~~~~~~-----gad~-~~~da~~av~~~~ 206 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGAPLSQDFADEI-----GADG-YAPDAASATELCR 206 (210)
T ss_dssp HHHHHTTCGGGCEEEEESTTCCHHHHHHH-----TCSE-ECSSHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHc-----CCeE-EECCHHHHHHHHH
Confidence 77777665 47999999987766554443 6543 3433333333433
No 101
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=83.91 E-value=1.5 Score=39.36 Aligned_cols=160 Identities=12% Similarity=0.074 Sum_probs=87.0
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCC
Q 022128 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (302)
Q Consensus 100 l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 178 (302)
-.++|+||+.+...-...++.+.+. +++++++|.... .. ++... ..+. ..+...++.|.+.. .
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~~----~~------~~~~V-~~D~~~~~~~a~~~L~~~G--~ 189 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRAR---GLPAVIADQPAR----EE------GMPFI-APNNRKAIAPAAQALIDAG--H 189 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHH---TCCEEEESSCCS----CT------TCCEE-EECHHHHTHHHHHHHHHTT--C
T ss_pred hCCCCEEEEecCCCChHHHHHHHHC---CCCEEEECCccC----CC------CCCEE-EeChHHHHHHHHHHHHHCC--C
Confidence 3679999998764433444545443 578999987431 11 33221 2222 22344555666543 3
Q ss_pred CEEEEeCCC---------c---------------chhhHHHHHHhCCCeeEEEeeeeeecCCCC-cHHHHHH----cCCC
Q 022128 179 CTVLYPASA---------K---------------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQ----ALSI 229 (302)
Q Consensus 179 ~~vL~~rg~---------~---------------~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~~----~~~~ 229 (302)
++|.++.+. . ...-+.+.|++.|..+....++........ ..+..+. ...+
T Consensus 190 r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 269 (366)
T 3h5t_A 190 RKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDL 269 (366)
T ss_dssp CSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTC
T ss_pred CcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCC
Confidence 578888721 1 123467788888887654333332111111 1112222 2468
Q ss_pred CEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHHHHHHHHcCCCeEE
Q 022128 230 PVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 230 d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
++|+.++-..+- ..++.+.+... .++.++.++..-... ..++..+.
T Consensus 270 ~ai~~~nD~~A~-g~~~al~~~G~~vP~disvigfD~~~~~~--~~~lttv~ 318 (366)
T 3h5t_A 270 TAVLCTVDALAF-GVLEYLKSVGKSAPADLSLTGFDGTHMAL--ARDLTTVI 318 (366)
T ss_dssp CEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEEEEECCHHHH--HTTCCEEE
T ss_pred cEEEECCcHHHH-HHHHHHHHcCCCCCCceEEEEECCChhhc--CCCccEEE
Confidence 999998887777 67777766542 357788876543332 44555443
No 102
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=83.45 E-value=1.9 Score=34.68 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=38.7
Q ss_pred HHHHhhhcccCCCceEEEECHHHHH--HHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 243 SWVNLISDTEQWSNSVACIGETTAS--AAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 243 ~~~~~l~~~~~~~~~i~~IG~~Ta~--~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
.|...+++.....-.++.||..... +++..|+..+.+....+.+.+.+.+.++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~l~~~~~~ 182 (187)
T 2wm8_A 125 HFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNGMNLQTLSQGLETFAKA 182 (187)
T ss_dssp HHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHEEEEeCCccChHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 4444444322222357788877654 5788999988888888899999888887654
No 103
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=83.23 E-value=9.1 Score=33.52 Aligned_cols=193 Identities=13% Similarity=0.067 Sum_probs=94.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEE-ChhhH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAGTA 139 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aV-G~~Ta 139 (302)
.+.+.++++|+++..+.. ......+.+...+.++. -.++|+||+.+.. .....++.+.+. +++++++ +....
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~~~ 140 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNITTP 140 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCCSC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCCCc
Confidence 345667788988764321 11100122211122222 1579999994322 223344445443 4566666 54210
Q ss_pred -HHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch------hhHHHHHHhCCCeeEEEeeee
Q 022128 140 -SIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 140 -~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~------~~L~~~L~~~G~~v~~~~vY~ 211 (302)
..+... .++.. +..+. ..+..+++.|.+.....++|+++.|.... .-+.+.|++.|. +....++.
T Consensus 141 ~~~~~~~-----~~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~ 213 (342)
T 1jx6_A 141 VREWDKH-----QPFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYY 213 (342)
T ss_dssp BGGGTTS-----CCSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEEC
T ss_pred ccccccC-----CCceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEec
Confidence 000001 02221 22232 22344555565531114789999887542 235667777775 33333332
Q ss_pred eecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHH--HHHHHH
Q 022128 212 TEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETT--ASAAKR 271 (302)
Q Consensus 212 ~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~T--a~~l~~ 271 (302)
. ....+ +..+. + ..+++|+..+-..+- .+++.+.+....++.++.++... ...+..
T Consensus 214 ~---~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~-g~~~al~~~g~~di~vvg~D~~~~~~~~~~~ 278 (342)
T 1jx6_A 214 T---KATKQSGYDAAKASLAKHPDVDFIYACSTDVAL-GAVDALAELGREDIMINGWGGGSAELDAIQK 278 (342)
T ss_dssp C---CSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHH-HHHHHHHHHTCTTSEEBCSBCCHHHHHHHHH
T ss_pred C---CCCHHHHHHHHHHHHHhCCCccEEEECCChhHH-HHHHHHHHcCCCCcEEEEeCCCHHHHHHHHc
Confidence 1 12211 12222 2 468999998888777 67777765433356777776554 444443
No 104
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=83.11 E-value=11 Score=28.01 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=33.0
Q ss_pred cCCCCEEEEECcHHHH-HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCC
Q 022128 226 ALSIPVVAVASPSAVR-SSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTH 282 (302)
Q Consensus 226 ~~~~d~ivftS~s~v~-~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~ 282 (302)
+.+.|+|+.+.+.... ..+....+......+.+.+-++...+.+++.|...++.|+.
T Consensus 67 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~v~~p~~ 124 (140)
T 1lss_A 67 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL 124 (140)
T ss_dssp TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred cccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHcCCCEEECHHH
Confidence 3578988888765432 02223333322222333355778888999999987654444
No 105
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=83.02 E-value=13 Score=31.57 Aligned_cols=183 Identities=9% Similarity=0.037 Sum_probs=95.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHH--HHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~a--v~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
+.+.++++|++++.... ....+.+...+.++. -.+.|+||+.+... ....++.+.+ .++++++++.....
T Consensus 23 i~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 96 (288)
T 1gud_A 23 IEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKIDM 96 (288)
T ss_dssp HHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCCH
T ss_pred HHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEECCCCCc
Confidence 45567788988775421 011122211122222 25799999976532 2223444444 36899999875322
Q ss_pred -HHHHHhhccCCCCce-ec-cCCCc-cHHHHHHhcccC-CCCCCEEEEeCCCcch-------hhHHHHHHhC-CCeeEEE
Q 022128 141 -IFEEVIQSSKCSLDV-AF-SPSKA-TGKILASELPKN-GKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRL 207 (302)
Q Consensus 141 -~l~~~~~~~~~G~~~-~~-~p~~~-~~e~L~~~L~~~-~~~~~~vL~~rg~~~~-------~~L~~~L~~~-G~~v~~~ 207 (302)
..++. |... .+ ..+.+ .+...++.|.+. ....++|.++.|.... .-+.+.|++. |+.+..
T Consensus 97 ~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~- 169 (288)
T 1gud_A 97 DNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA- 169 (288)
T ss_dssp HHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE-
T ss_pred cccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE-
Confidence 22333 3322 22 22322 233344555443 2012689999886432 2356778777 765432
Q ss_pred eeeeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC-CCceEEEECHHH
Q 022128 208 NTYTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ-WSNSVACIGETT 265 (302)
Q Consensus 208 ~vY~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~-~~~~i~~IG~~T 265 (302)
++. .....+ +..+. + ..+++|+.++-..+- ..++.+.+... .++.++.++..-
T Consensus 170 -~~~---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~~dv~vvGfD~~~ 230 (288)
T 1gud_A 170 -SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAM-GVAQAVANAGKTGKVLVVGTDGIP 230 (288)
T ss_dssp -EEE---CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHH-HHHHHHHHTTCTTTSEEEEESCCH
T ss_pred -eec---CCccHHHHHHHHHHHHHhCCCceEEEECCCchHH-HHHHHHHhcCCCCCeEEEEeCCCH
Confidence 211 122221 11222 2 468999998887777 67777766432 357788886544
No 106
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=82.41 E-value=9.5 Score=30.43 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l-~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aV 134 (302)
+.+...++.+.|++.|+.+..+.-- +........++. + ..+|.++..+..-.+.|...+++.+.+.-.++.|
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT~~-----~~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAASRT-----SEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEECC-----SCHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEeCC-----CChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 3456788889999999876543211 101223333333 3 3477776666666777888788877766778999
Q ss_pred ChhhHH--HHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 135 GAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 135 G~~Ta~--~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
|..... ++++. |+.+..+...++.+.+.+.|..
T Consensus 144 gD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~ 178 (187)
T 2wm8_A 144 DDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLET 178 (187)
T ss_dssp ESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHH
T ss_pred eCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHH
Confidence 988654 34555 9988777777777766665543
No 107
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=82.00 E-value=8.6 Score=33.50 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=91.8
Q ss_pred HHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhc--CCCccEEEEeCh--HHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 65 LIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 65 l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~--~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
+.+.++++|++++.. +. ..+.....+.++. -.+.|.||+.+. .++...++.+.+ .++++++++....
T Consensus 25 ~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~---~gipvV~~d~~~~ 96 (316)
T 1tjy_A 25 AQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ---RGVKILTWDSDTK 96 (316)
T ss_dssp HHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCC
T ss_pred HHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHH---CcCEEEEecCCCC
Confidence 445667789877643 21 1122211122222 257999998754 333444555544 4688999886432
Q ss_pred HHHHHHhhccCCCCceec-cCCCc-cHHHHHHhcccCCC-CCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEee
Q 022128 140 SIFEEVIQSSKCSLDVAF-SPSKA-TGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~-~p~~~-~~e~L~~~L~~~~~-~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~v 209 (302)
. . +....+ ..+.. .+..+++.|.+... ..++|.++.|.... .-+.+.|++.+..+..+..
T Consensus 97 ~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~ 166 (316)
T 1tjy_A 97 P----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTT 166 (316)
T ss_dssp G----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred C----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 1 1 111112 22222 23334444444211 24689999886442 2345667655323332332
Q ss_pred eeeecCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHH--HHHHHHHcC
Q 022128 210 YTTEPVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGET--TASAAKRLG 273 (302)
Q Consensus 210 Y~~~~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~--Ta~~l~~~G 273 (302)
+.. ....+ +..+. + .++++|+..+-..+. ..++.+++....++.++.++.. ..+.+.. |
T Consensus 167 ~~~---~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~-g~~~al~~~G~~dv~VvG~D~~~~~~~~i~~-g 234 (316)
T 1tjy_A 167 QFG---YNDATKSLQTAEGIIKAYPDLDAIIAPDANALP-AAAQAAENLKRNNLAIVGFSTPNVMRPYVQR-G 234 (316)
T ss_dssp EEC---TTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHH-HHHHHHHHTTCCSCEEEEBCCHHHHHHHHHH-T
T ss_pred ccC---CCCHHHHHHHHHHHHHhCCCCCEEEECCCccHH-HHHHHHHHcCCCCEEEEEeCCCHHHHHHHHC-C
Confidence 211 22221 11222 2 468998888877776 6666666543124667777653 3444443 5
No 108
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=81.42 E-value=13 Score=26.95 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=66.6
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEE----CcHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivft----S~s~v~~~~~~~l~~~ 251 (302)
++||++-.+. .+..+...|+..|++|... . ...+.++.+ ..+|.|+.- ..+..+ +.+.+++.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~-~~~~al~~l~~~~~dlvllD~~~p~~~g~~--~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------E-NGQIALEKLSEFTPDLIVLXIMMPVMDGFT--VLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------S-SHHHHHHHHTTBCCSEEEECSCCSSSCHHH--HHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------C-CHHHHHHHHHhcCCCEEEEeccCCCCcHHH--HHHHHHhc
Confidence 5788887654 4677888899999765321 1 122233333 468877763 223344 33444432
Q ss_pred c-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 252 E-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 252 ~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
. ..+.+++.++ +.....+.+.|... ++.+..+.+.|.+.|...++
T Consensus 72 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 72 EEWKRIPVIVLTAKGGEEDESLALSLGARK-VMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp TTTTTSCEEEEESCCSHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC
T ss_pred ccccCCCEEEEecCCchHHHHHHHhcChhh-hccCCCCHHHHHHHHHHHhc
Confidence 2 2346666654 45566677889875 67788899999999988764
No 109
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.41 E-value=9.6 Score=32.82 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~ 118 (302)
.+++|++..+.++ ..-+...|+.+|++|+.+..- +|. +.+.+.+.. .+.|.|.+++. ..+..+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp~---e~l~~~~~~-~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQK-EKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHH-HCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CCH---HHHHHHHHH-cCCCEEEEEeeccCCHHHHHHHH
Confidence 4667887766543 234666889999999988763 232 344444422 46788888773 3455667
Q ss_pred HHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
+.+++.+.+ +++++-|....+.+.+.+ |... +.++...+-.++..+.
T Consensus 196 ~~l~~~~~~-~~v~vGG~~~~~~~~~~i-----gad~-~~~da~~av~~~~~l~ 242 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGGAVNQDFVSQF-----ALGV-YGEEAADAPKIADAII 242 (258)
T ss_dssp HHHHTTTCC-CCEEEESTTCCHHHHHTS-----TTEE-ECSSTTHHHHHHHHHH
T ss_pred HHHHhcCCC-CcEEEECccCCHHHHHHc-----CCeE-EECCHHHHHHHHHHHH
Confidence 777776654 999999987665554443 6432 4454445555555543
No 110
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=81.39 E-value=38 Score=32.30 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=109.2
Q ss_pred CChHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-h
Q 022128 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG-~ 136 (302)
++..++.+.|++.|+++..+ | .....+++ .++.+.+.-+..++..-....+.|++ .+.+-+...-+| .
T Consensus 170 gD~~eikrlL~~~Gi~v~~~~p-----gg~t~~ei----~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~ 240 (525)
T 3aek_B 170 DDVAEVTKLLATMGIKVNVCAP-----LGASPDDL----RKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVG 240 (525)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEE-----TTCCHHHH----HTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHH
T ss_pred hhHHHHHHHHHHCCCeEEEEeC-----CCCCHHHH----HhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHH
Confidence 35578999999999999874 3 12223333 35667778888888766677777755 455545556778 6
Q ss_pred hhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHH-HhCCCeeEEEeeeeeec
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~~~~vY~~~~ 214 (302)
.|.+.|++..+.- |.++ ..-. ..-..-+...+......|+++++..+..-.--|...| .+.|++|..+-.|...
T Consensus 241 ~T~~~Lr~ia~~~--g~~~-~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~~~- 316 (525)
T 3aek_B 241 ATRDFLAEVSKIT--GLPV-VTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYNRE- 316 (525)
T ss_dssp HHHHHHHHHHHHH--CCCC-CCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESCGG-
T ss_pred HHHHHHHHHHHHH--CCCH-HHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCchh-
Confidence 6777777652111 5443 2211 1111111111211112678999886555556788889 7999998665554321
Q ss_pred CCCCcHH---HHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 215 VHHVDQT---VLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 215 ~~~~~~~---~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
.... .++.. ..++++......++ +.+.+. +..++.-|..-...+++.|+..+.
T Consensus 317 ---~~~~~~~~~~~~-~~~v~i~~D~~el~----~~i~~~---~pDL~ig~~~~~~~a~~~giP~~~ 372 (525)
T 3aek_B 317 ---MARPLRTAAAEY-GLEALITDDYLEVE----KAIEAA---APELILGTQMERNIAKKLGLPCAV 372 (525)
T ss_dssp ---GHHHHHHHHHHT-TCCCEECSCHHHHH----HHHHHH---CCSEEEECHHHHHHHHHHTCCEEE
T ss_pred ---HHHHHHHHHHhc-CCcEEEeCCHHHHH----HHHhhc---CCCEEEecchhHHHHHHcCCCEEE
Confidence 1111 12222 22344444444444 333332 223554556666677888887544
No 111
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=81.29 E-value=8.3 Score=30.76 Aligned_cols=118 Identities=14% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhC-CCcEEEece------------EEeeeC--CCchHHHHHHhcCCCccEEEEeCh
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPL------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~------------~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
++.+++|+|.-...-...+++.|.+. |++++.+-. ...... .+.+.+.+. ..+.++|.||.+++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~-~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERI-LDTGHVKLVLLAMP 114 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTB-CSCCCCCEEEECCS
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhc-cCCCCCCEEEEeCC
Confidence 45688899997655567788899988 998876521 111111 111112111 02467899999877
Q ss_pred HH--HHHHHHHHHHcCCCCceEE--EEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 112 EA--GSVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 112 ~a--v~~f~~~l~~~~~~~~~i~--aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
+. .......++..+ +..+++ +.++...+.+++. |....+.|....+..+++.+.
T Consensus 115 ~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 115 HHQGNQTALEQLQRRN-YKGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp SHHHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHH
Confidence 43 233344445544 244554 4455667778887 887766676656666665543
No 112
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=80.34 E-value=17 Score=27.57 Aligned_cols=110 Identities=5% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~~ 250 (302)
..+||++..+. .+..|.+.|+..|+.|... ....+.++.+ ..+|+|++--. ...+ +++.+++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~---------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~--~~~~lr~ 75 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHV---------RNGREAVRFLSLTRPDLIISDVLMPEMDGYA--LCRWLKG 75 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE---------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHH--HHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 46899997765 4678889999988765321 1222333333 46888887532 3333 4444444
Q ss_pred cc-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 TE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.. ...+++++++ +.....+.+.|... ++.+..+.+.|++.|...++..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLECGADD-FITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHHCCSE-EEESSCCHHHHHHHHHHHHHHT
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 32 2346666654 44455566789875 5677789999999999887643
No 113
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=80.24 E-value=1.8 Score=37.48 Aligned_cols=142 Identities=6% Similarity=0.048 Sum_probs=83.9
Q ss_pred EEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeee
Q 022128 133 VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 133 aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
++|=+|.+++.+++ + +..+.. ..++.+.+. . ..+++|.++..-.. +.+.|++. + ++.+++.
T Consensus 83 algiAaiNAv~~~~-----~---~~~~~~--~~d~~~~~~-~-~~~~kV~vIG~~p~---l~~~l~~~-~---~v~V~d~ 143 (249)
T 3npg_A 83 TLGVAAINAVSQYY-----I---DLREAK--WIDVTELIQ-Q-DEIKRIAIIGNMPP---VVRTLKEK-Y---EVYVFER 143 (249)
T ss_dssp HHHHHHHHHHHHHH-----C---CCTTCB--CCCHHHHHH-T-SCCSEEEEESCCHH---HHHHHTTT-S---EEEEECC
T ss_pred HHHHHHHHHhhhhc-----c---ccCCcc--ccCHHHHHh-h-cCCCEEEEECCCHH---HHHHHhcc-C---CEEEEEC
Confidence 55667778877663 2 111211 222334443 1 24579998876553 67778775 4 5677887
Q ss_pred ecCCC---C-cHHHH-HHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHHHHH---HHHcCCCeEEecCCCC
Q 022128 213 EPVHH---V-DQTVL-KQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETTASA---AKRLGLKNVYYPTHPG 284 (302)
Q Consensus 213 ~~~~~---~-~~~~~-~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~---l~~~G~~~~~v~~~~~ 284 (302)
.+... . +.... ..+...|+++.|.+.-+...+-.++.... ....++.+||+|.-. +.++|+..+.-..-.+
T Consensus 144 ~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~-~~~~vvl~GPS~~~~P~~~~~~Gv~~l~g~~v~d 222 (249)
T 3npg_A 144 NMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAK-KAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTN 222 (249)
T ss_dssp SGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCS-SCSEEEEESGGGCSCGGGGTTSSCCEEEEEEESC
T ss_pred CCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhCc-ccCeEEEEecCchhhHHHHhhCCccEEEEEEecC
Confidence 77521 1 11111 23568999999999988833444443322 134578899998743 4456887643333457
Q ss_pred hHHHHHHHHH
Q 022128 285 LEGWVDSILE 294 (302)
Q Consensus 285 ~~~ll~~i~~ 294 (302)
.+.+++.|++
T Consensus 223 ~~~~l~~i~~ 232 (249)
T 3npg_A 223 IEKALVKLKL 232 (249)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888888765
No 114
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=80.13 E-value=31 Score=30.45 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=124.7
Q ss_pred CCCCCeEEEe-CC-CCChHHHHHHHHhCCCcEE-Ee-ceE---EeeeCCCchHHHHHHhcCCCccE-EEEeChHHHHHHH
Q 022128 47 SNSNPKVVVT-RE-RGKNGKLIKALAKHRIDCL-EL-PLI---QHAQGPDTDRLSSVLNADTIFDW-IIITSPEAGSVFL 118 (302)
Q Consensus 47 ~l~g~~Ilit-R~-~~~~~~l~~~L~~~G~~v~-~~-P~~---~~~~~~~~~~l~~~l~~l~~~d~-IifTS~~av~~f~ 118 (302)
-+..++|++. -. ........+.|.+.|++++ .+ |-. ++...+-+..+.+..+.. ..|. +||+.+..+....
T Consensus 10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~-~vD~avI~vP~~~~~~~~ 88 (305)
T 2fp4_A 10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQT-GATASVIYVPPPFAAAAI 88 (305)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHH-CCCEEEECCCHHHHHHHH
T ss_pred HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcC-CCCEEEEecCHHHHHHHH
Confidence 4456666666 43 2225566778888998843 22 321 211111122344444211 3454 4666677777777
Q ss_pred HHHHHcCCCCceEEEEChhhHH--HHHHHhhccCC-CCceeccCCCc---cH-HHHHHhcccCCCCCCEEEEeC-CCcch
Q 022128 119 EAWKEAGTPNVRIGVVGAGTAS--IFEEVIQSSKC-SLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPA-SAKAS 190 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~--~l~~~~~~~~~-G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~r-g~~~~ 190 (302)
+.+.+.+.+.+-+++-|-...+ .+.+.. ... |+.+ +.|... +. ..+...++....+.++|-++. +..-.
T Consensus 89 ~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a--~~~~gi~l-iGPnc~Gii~p~~~~~~~~~~~~~~~G~va~vSqSG~l~ 165 (305)
T 2fp4_A 89 NEAIDAEVPLVVCITEGIPQQDMVRVKHRL--LRQGKTRL-IGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLT 165 (305)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHHHHH--TTCSSCEE-ECSSSCEEEETTTEEEESSCGGGCCEEEEEEEESCSHHH
T ss_pred HHHHHCCCCEEEEECCCCChHHHHHHHHHH--HhcCCcEE-EeCCCCeEecccccceeeccccCCCCCCEEEEecchHHH
Confidence 7777766544344555543333 444443 334 5654 334321 11 111111222212335666553 33334
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecC-CCCcHHHHHHc---CCCCEEEEECcH------HHHHHHHHhhhcccCCCceEE-
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASPS------AVRSSWVNLISDTEQWSNSVA- 259 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~ivftS~s------~v~~~~~~~l~~~~~~~~~i~- 259 (302)
..+.+.+.++|.-+..+.-.=..+. .....++++.+ .+-++|++.... ..+ .|++...+ ...+++++
T Consensus 166 ~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~-~f~~~~~~-~~~~KPVv~ 243 (305)
T 2fp4_A 166 YEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAA-EFLKQHNS-GPKSKPVVS 243 (305)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHH-HHHHHHSC-STTCCCEEE
T ss_pred HHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHH-HHHHHHHH-hcCCCCEEE
Confidence 5677788888988877777666653 33334455443 456788887763 377 77776543 11123333
Q ss_pred -EECHHH-----------------------HHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 260 -CIGETT-----------------------ASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 260 -~IG~~T-----------------------a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
..|.+. ..++++.|+-++ .+.++|.+.++..+++
T Consensus 244 ~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v-----~~~~el~~~~~~~~~~ 301 (305)
T 2fp4_A 244 FIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVS-----MSPAQLGTTIYKEFEK 301 (305)
T ss_dssp EEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEEC-----SSTTCHHHHHHHHHHH
T ss_pred EEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEe-----CCHHHHHHHHHHHHHh
Confidence 345433 346888887542 2455677776666653
No 115
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=80.12 E-value=28 Score=32.08 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=93.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTP 127 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~~~~~ 127 (302)
.++|+++.+- .+...+.|++.|+ ++...+- ..+.+++.+ .+.++|.+++.|..-+. .+++.+ +
T Consensus 4 ~~kil~~~~~--~~~~~~~l~~~~~~~v~~~~~-----~~~~~~l~~---~~~~~d~l~~~~~~~~~~~~l~~~-----~ 68 (404)
T 1sc6_A 4 KIKFLLVEGV--HQKALESLRAAGYTNIEFHKG-----ALDDEQLKE---SIRDAHFIGLRSRTHLTEDVINAA-----E 68 (404)
T ss_dssp SCCEEECSCC--CHHHHHHHHHTTCCCEEECSS-----CCCHHHHHH---HTTSCSEEEECSSCCBCHHHHHHC-----S
T ss_pred ceEEEEeCCC--CHHHHHHHHhCCCcEEEEcCC-----CCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 4689998764 3445678888887 6665431 112344433 46789999887754332 222221 3
Q ss_pred CceEE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cc-------------cC--------
Q 022128 128 NVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-------------KN-------- 174 (302)
Q Consensus 128 ~~~i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~-------------~~-------- 174 (302)
+++++ +.|-++ -+++.+. |+.+.-.|. .+++..++. +. .|
T Consensus 69 ~Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~ 141 (404)
T 1sc6_A 69 KLVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 141 (404)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC
T ss_pred CCcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCcc
Confidence 55554 334443 3567777 998876664 333322210 00 01
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC--cHHHHHHcCCCCEEEEECcHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~~~~d~ivftS~s~ 239 (302)
...|+++.++.-..-...+...|+..|.+|..+..+........ ...+-+.+...|+|++.-|.+
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 12678898887666667789999999988754433222111100 001112234678888887764
No 116
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=79.15 E-value=14 Score=32.55 Aligned_cols=158 Identities=16% Similarity=0.026 Sum_probs=85.3
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~Iif-TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 178 (302)
.+.+.||- .+..........+.+. +++++..+..+. .+.... ..-..+.|.. ..+..+++.+.+. ..
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~--g~ 139 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGTS-IITERS-----PYIVRTSFTLAQSSIIIGDWAAKN--GI 139 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCG-GGGGGC-----TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCCh-hhccCC-----CCEEEecCChHHHHHHHHHHHHHc--CC
Confidence 57888884 4455555566666554 466777664332 111110 1111123332 2344566666654 34
Q ss_pred CEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE-ECcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf-tS~s~v~~~~~~~l~~ 250 (302)
++|.++..+.. ...+.+.|++.|..+.....|..... +....+..+ .++|+|++ .+...+. .+++.+.+
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~~~ 216 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANP--DFAPFLQRMKDAKPDAMFVFVPAGQGG-NFMKQFAE 216 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSC--CCHHHHHHHHHHCCSEEEEECCTTCHH-HHHHHHHH
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCC--cHHHHHHHHHhcCCCEEEEeccchHHH-HHHHHHHH
Confidence 68877764432 35678889999998866655544322 222223332 47898887 5666666 67777765
Q ss_pred ccCC--CceEEEECH-HHHHHHHHc
Q 022128 251 TEQW--SNSVACIGE-TTASAAKRL 272 (302)
Q Consensus 251 ~~~~--~~~i~~IG~-~Ta~~l~~~ 272 (302)
.... +++++..+. .....++..
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~~~~~~ 241 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDDLLNSM 241 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHHHHTTC
T ss_pred cCCCcCCceEEecCcccCHHHHHhh
Confidence 4321 256766552 333444443
No 117
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=78.96 E-value=3.7 Score=34.97 Aligned_cols=182 Identities=13% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~ 140 (302)
..+.+.++++|+++..+..- ...+.+...+.++.+ .++|+||+.+... ..+.+.+......+++++.++.....
T Consensus 27 ~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~-~~~~~~~~~~~~~~iPvV~~~~~~~~ 102 (289)
T 3brs_A 27 EGAQMAAKEYEIKLEFMAPE---KEEDYLVQNELIEEAIKRKPDVILLAAADY-EKTYDAAKEIKDAGIKLIVIDSGMKQ 102 (289)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHTCCSEEEECCSCT-TTTHHHHTTTGGGTCEEEEESSCCSS
T ss_pred HHHHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHHHhCCCEEEEeCCCh-HHhHHHHHHHHHCCCcEEEECCCCCC
Q ss_pred HHHHHhhccCCC-CceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhh-------HHHHHHhCCCeeEEEeeeee
Q 022128 141 IFEEVIQSSKCS-LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNE-------IEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 141 ~l~~~~~~~~~G-~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~-------L~~~L~~~G~~v~~~~vY~~ 212 (302)
. + +..........+..+++.|.+.....++|+++.|...... +.+.|++.|..+.. ++..
T Consensus 103 ----~------~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~ 170 (289)
T 3brs_A 103 ----D------IADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IYYC 170 (289)
T ss_dssp ----C------CCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EEEC
T ss_pred ----C------cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--eecC
Q ss_pred ecCCCCcHHHHHHc----CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEEC
Q 022128 213 EPVHHVDQTVLKQA----LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 213 ~~~~~~~~~~~~~~----~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG 262 (302)
........+....+ ..+++|+.++-..+. .+++.+.+.... -.+.++|
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~-g~~~al~~~G~~-~di~vvg 222 (289)
T 3brs_A 171 DSNYDKAYDGTVELLTKYPDISVMVGLNQYSAT-GAARAIKDMSLE-AKVKLVC 222 (289)
T ss_dssp TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHH-HHHHHHHHTTCT-TTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEECCCcchH-HHHHHHHhcCCC-CCEEEEE
No 118
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=78.76 E-value=30 Score=30.59 Aligned_cols=165 Identities=13% Similarity=0.056 Sum_probs=87.9
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCCc
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~~ 129 (302)
++|+++.+-. ++..+.|++.|+++...+.- ..+.+++.+. +.++|.++..+...+ +.+++.+ +++
T Consensus 1 ~~vl~~~~~~--~~~~~~l~~~g~~v~~~~~~----~~~~~~~~~~---~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLP--GKALDRLRERGLEVEVHRGL----FLPKAELLKR---VEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCS--SSTTHHHHHTTCEEEECCSS----CCCHHHHHHH---HTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCC--HHHHHHHHhcCCeEEEecCC----CCCHHHHHHH---hcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 4688877543 22356678887776543211 1123444443 467898886543211 1223322 345
Q ss_pred eEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cc-------------cC----------
Q 022128 130 RIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-------------KN---------- 174 (302)
Q Consensus 130 ~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~-------------~~---------- 174 (302)
|+++ .|.++ .+++.+. |+.+...|. ++++.+++. +. .|
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 5543 22222 3556677 888766654 233332221 00 01
Q ss_pred -CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC--CcHHHHHHcCCCCEEEEECcHH
Q 022128 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 -~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~--~~~~~~~~~~~~d~ivftS~s~ 239 (302)
...+++|.++....-...+...|+..|.+| .+|.+.+... ......+.+...|+|++.-|..
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V---~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRV---VYHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEE---EEECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 125788999977666778899999999876 4555543221 1111112234679888886664
No 119
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=78.50 E-value=17 Score=31.90 Aligned_cols=165 Identities=11% Similarity=0.090 Sum_probs=83.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
-+.+.++++|+++..+.. . .+.+ ..+.++.+ .++|.||+++..--..+.+...+ .++++++.++.....
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~--~~~~-~~~~l~~l~~~~~dgIi~~~~~~~~~~~~~a~~--~p~~p~v~id~~~~~- 98 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---S--TDAE-YVPSLSAFADENMGLVVACGSFLVEAVIETSAR--FPKQKFLVIDAVVQD- 98 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---C--SGGG-HHHHHHHHHHTTCSEEEEESTTTHHHHHHHHHH--CTTSCEEEESSCCCS-
T ss_pred HHHHHHHHhCCeEEEEeC---C--CHHH-HHHHHHHHHHcCCCEEEECChhHHHHHHHHHHH--CCCCEEEEEcCccCC-
Confidence 445567788988765432 1 1111 12223222 56999999986543443333332 357889999863210
Q ss_pred HHHHhhccCCCCceeccCCCccHHHH----HHhcccCCCCC--CEEEEeCCCcc------hhhHHHHHHhCCCeeEEEee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKATGKIL----ASELPKNGKKK--CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~~~e~L----~~~L~~~~~~~--~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~v 209 (302)
.. .+.. +..+.+.+.-+ +..|.+ .| ++|.++.|... ..-+.+.+++.|.++....+
T Consensus 99 --~~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~ 166 (318)
T 2fqx_A 99 --RD------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVE 166 (318)
T ss_dssp --CT------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred --CC------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 01 2221 22233223223 244443 34 48999987532 12355677787877665555
Q ss_pred eeeecCCCCc-HHHHHH-c-CCCCEEEEECcHHHHHHHHHhhhc
Q 022128 210 YTTEPVHHVD-QTVLKQ-A-LSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 210 Y~~~~~~~~~-~~~~~~-~-~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
|......... .+..+. + ..+|+|+..+-..+- ..++.+++
T Consensus 167 ~~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~-Gv~~a~~e 209 (318)
T 2fqx_A 167 VANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGN-GVIKEARD 209 (318)
T ss_dssp ECSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHH-HHHHHHHH
T ss_pred EccCccCHHHHHHHHHHHHHCCCcEEEECCCCCch-HHHHHHHh
Confidence 5432111011 112222 2 468998888766555 44444443
No 120
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=78.48 E-value=16 Score=27.77 Aligned_cols=113 Identities=11% Similarity=0.128 Sum_probs=68.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece------------EEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~------------~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
.++|+|.-...-...+++.|.+.|++++.+-. +..... .+.+.+.+ . .+.++|++|.+.++...
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~-a-~i~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQL-A-HLECAKWLILTIPNGYE 84 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHH-T-TGGGCSEEEECCSCHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHh-c-CcccCCEEEEECCChHH
Confidence 34677776655567788888888887776532 111111 11122222 1 34678999998876554
Q ss_pred HH--HHHHHHcCCCCceEEEE--ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 116 VF--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 116 ~f--~~~l~~~~~~~~~i~aV--G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
.. ...+++.. ++.++++. .+...+.|++. |.+..+.|....++.+++.+
T Consensus 85 n~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l 137 (140)
T 3fwz_A 85 AGEIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELL 137 (140)
T ss_dssp HHHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHh
Confidence 32 23333332 35566644 55677788887 99877778777777776654
No 121
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=78.30 E-value=7.8 Score=37.12 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=82.1
Q ss_pred ChHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CCC
Q 022128 61 KNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTP 127 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~~ 127 (302)
+..++.+.|++.|+++..+|-+ ...+.. ..+.+ +.++.+...-+..++.......+.|++. +.+
T Consensus 232 D~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg--~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP 308 (519)
T 1qgu_B 232 NFRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGG--TTQQE-MKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQP 308 (519)
T ss_dssp HHHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCC--BCHHH-HHHGGGEEEEEESSTTTCHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHcCCeEEEecCccccccCcccCcccccCCC--CCHHH-HHhhhcCCEEEEECHHHHHHHHHHHHHHcCCC
Confidence 3478999999999999988754 222211 12322 3356677777777776545566666664 555
Q ss_pred CceE-EEEC-hhhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCC
Q 022128 128 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (302)
Q Consensus 128 ~~~i-~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G 201 (302)
-+.. +-+| ..|.+.|++..+.- |.. +|.... -..+.+.+.+.. ..|+++++..+..-.--|...|.+.|
T Consensus 309 ~i~~~~PiG~~~T~~~L~~la~~~--g~~---~~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElG 383 (519)
T 1qgu_B 309 ATEVAIPLGLAATDELLMTVSQLS--GKP---IADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELG 383 (519)
T ss_dssp CCCCCCCBSHHHHHHHHHHHHHHH--CCC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTT
T ss_pred eEecCCCcchHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCC
Confidence 4444 3477 66777777652111 432 121110 112333333211 16789998865444456677899999
Q ss_pred CeeEEEee
Q 022128 202 FEVVRLNT 209 (302)
Q Consensus 202 ~~v~~~~v 209 (302)
++|..+.+
T Consensus 384 m~vv~v~~ 391 (519)
T 1qgu_B 384 CEPTVILS 391 (519)
T ss_dssp CEEEEEEE
T ss_pred CEEEEEEe
Confidence 98865554
No 122
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=78.28 E-value=14 Score=32.14 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=72.0
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcchh-----hHHHH--------HHhC-CCeeEEEeeeeeecCCCCcHHHHHHc--C
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKASN-----EIEEG--------LSNR-GFEVVRLNTYTTEPVHHVDQTVLKQA--L 227 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~-----~L~~~--------L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~--~ 227 (302)
.+.+...+........+|++-+-..... .+... |+.. |++|..+-. . .+.+++.+.. .
T Consensus 106 ~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--~----vp~e~iv~aa~e~ 179 (262)
T 1xrs_B 106 MEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--Q----VANEDFIKKAVEL 179 (262)
T ss_dssp HHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--S----BCHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--C----CCHHHHHHHHHHc
Confidence 3444444443333345777665443332 23333 7777 877644333 2 2233333332 5
Q ss_pred CCCEEEEECcHH-----HHHH---HHHhhhcccCC-CceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 228 SIPVVAVASPSA-----VRSS---WVNLISDTEQW-SNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 228 ~~d~ivftS~s~-----v~~~---~~~~l~~~~~~-~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
++|+|.+.+..+ .. . +.+.+++.... ++++++=|.. +.+.+++.|... +..+......+++.+.+.+.
T Consensus 180 ~~d~VglS~l~t~~~~~~~-~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~iGad~-~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 180 EADVLLVSQTVTQKNVHIQ-NMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDA-GFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp TCSEEEEECCCCTTSHHHH-HHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeecCCccchHH-HHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHcCCeE-EECCchHHHHHHHHHHHHHH
Confidence 889988877443 33 3 44445443222 3677777754 455677789876 45666788888888887766
Q ss_pred cc
Q 022128 298 EH 299 (302)
Q Consensus 298 ~~ 299 (302)
+.
T Consensus 258 ~~ 259 (262)
T 1xrs_B 258 DR 259 (262)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 123
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=78.18 E-value=8.4 Score=32.31 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=65.1
Q ss_pred CCCCeEEEeCCCCCh-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE--eChHH-----HH
Q 022128 48 NSNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GS 115 (302)
Q Consensus 48 l~g~~IlitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Iif--TS~~a-----v~ 115 (302)
..+.+|++.-+.++. .-....|+.+|++|+.+..- +| .+.+.+.... .+.|.|.+ ++-.. ++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~--vp---~e~iv~~~~~-~~~d~v~l~~S~l~~~~~~~~~ 163 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVD--VL---NENVVEEAAK-HKGEKVLLVGSALMTTSMLGQK 163 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSS--CC---HHHHHHHHHH-TTTSCEEEEEECSSHHHHTHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCC--CC---HHHHHHHHHH-cCCCEEEEEchhcccCcHHHHH
Confidence 345678777655432 34666889999999987642 11 2344444423 45787777 55333 45
Q ss_pred HHHHHHHHcCC-CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHH
Q 022128 116 VFLEAWKEAGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (302)
Q Consensus 116 ~f~~~l~~~~~-~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~ 169 (302)
.+.+.+++.+. +++++++-|....+.+.+.+ |-.. +.++...+-.+++
T Consensus 164 ~~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~i-----Gad~-~~~dA~~av~~a~ 212 (215)
T 3ezx_A 164 DLMDRLNEEKLRDSVKCMFGGAPVSDKWIEEI-----GADA-TAENAAEAAKVAL 212 (215)
T ss_dssp HHHHHHHHTTCGGGSEEEEESSSCCHHHHHHH-----TCCB-CCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHh-----CCeE-EECCHHHHHHHHH
Confidence 56667777775 47999999986666555554 6432 3443334444443
No 124
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=77.75 E-value=4.4 Score=40.21 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=73.1
Q ss_pred CCCEEEEeCC--Ccc----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-H----------
Q 022128 177 KKCTVLYPAS--AKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-A---------- 239 (302)
Q Consensus 177 ~~~~vL~~rg--~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-~---------- 239 (302)
.+++|+++-+ ++. -..+.+.|++.|+.|+.+-.-.-...+...... ....+|+|++.... .
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~--~s~~fDAVvlPGG~~g~~~~~~~~~~ 605 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSAS--DAVQFDAVVVADGAEGLFGADSFTVE 605 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTC--CGGGCSEEEECTTCGGGCCTTTTTCC
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcC--CccccCeEEecCCCcccccccccccc
Confidence 5789999988 432 346889999999999877763221111110100 01468999998773 2
Q ss_pred ------HH-----HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCC----eEEecCCCChHHHHHHHHHHHHccCC
Q 022128 240 ------VR-----SSWVNLISDTEQWSNSVACIGETTASAAKRLGLK----NVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 240 ------v~-----~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~----~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
.. ....+++.+...+...|.+||.... .|.+.|+. -++.+..+ .++.++.+.+.+.+|+.
T Consensus 606 ~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~-vL~~aGi~~~d~GVvts~~~-~~~f~~~fi~~la~hR~ 680 (688)
T 2iuf_A 606 PSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSD-ALESGQISSERQGVYTGKNA-GDAFAKDIKSGLSTFKF 680 (688)
T ss_dssp CCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHH-HHHHTTCCTTSTTEEEESSS-SHHHHHHHHHHHHHCSC
T ss_pred cccccchhhcccChHHHHHHHHHHHcCCEEEEECchHH-HHHHcCCCCCCCCEEEcCCc-cHHHHHHHHHHHHhCCC
Confidence 11 0122233222123567778876554 78888884 35556655 56788888888887763
No 125
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=77.68 E-value=3.3 Score=34.33 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCEEEEeCCCcc------------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC-------cH
Q 022128 178 KCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PS 238 (302)
Q Consensus 178 ~~~vL~~rg~~~------------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS-------~s 238 (302)
..+||++-|... .+.+.+.+++.|.+|+.+.+|+ ..+..+..+.+...|.|+|.+ |.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~----~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADS----DYDVKAEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSS----CCCHHHHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCc----cccHHHHHHHHHhCCEEEEECCccccCCCH
Confidence 457777755433 1245667777799999999986 233344455567889999988 56
Q ss_pred HHHHHHHHh
Q 022128 239 AVRSSWVNL 247 (302)
Q Consensus 239 ~v~~~~~~~ 247 (302)
.++ .|++.
T Consensus 88 ~LK-~~iDr 95 (204)
T 2amj_A 88 TVK-KYIDD 95 (204)
T ss_dssp HHH-HHHHH
T ss_pred HHH-HHHHH
Confidence 888 88885
No 126
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=77.44 E-value=16 Score=35.95 Aligned_cols=127 Identities=13% Similarity=0.161 Sum_probs=79.0
Q ss_pred ccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHH---------HHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCC
Q 022128 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEE---------GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIP 230 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~---------~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d 230 (302)
.+.+.+-..+.+. ..+|++-+-....-++.. .|+..|++|..+-+ ..+.+++.+.+ .++|
T Consensus 589 ls~eEi~~~i~e~---kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGv------dVPpEeIVeAA~EedAD 659 (763)
T 3kp1_A 589 LSEDEIREDIEKT---PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGT------SVPVEKLVDAAIELKAD 659 (763)
T ss_dssp CCHHHHHHHHHHS---CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCS------SBCHHHHHHHHHHTTCS
T ss_pred CCHHHHHhhhhcc---CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCC------CCCHHHHHHHHHHcCCC
Confidence 4556665555543 358888776655444444 58999988755543 22334444433 5899
Q ss_pred EEEEECcHHH--------HHHHHHhhhcccCC-CceEEEECH-HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 231 VVAVASPSAV--------RSSWVNLISDTEQW-SNSVACIGE-TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 231 ~ivftS~s~v--------~~~~~~~l~~~~~~-~~~i~~IG~-~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
+|.+++-.+- + .+.+.+++.... ++++++=|. .+.+.+++.|... +..+......+++.|.+.+.+.
T Consensus 660 VVGLSsLLTt~dihL~~Mk-evIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa-~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 660 AILASTIISHDDIHYKNMK-RIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDA-GFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp EEEEECCCCGGGHHHHHHH-HHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSE-EECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCchhhHHHHH-HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcE-EECCcchHHHHHHHHHHHHHHh
Confidence 9999864443 4 455556554433 367877775 4556677789876 4456667778888887776543
No 127
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=77.40 E-value=8 Score=33.86 Aligned_cols=173 Identities=8% Similarity=0.069 Sum_probs=89.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
.+.+.++++|++++.+.. ..+.+...+.++. -.++|+|| .+...-. +.+. ..+++++.++.....
T Consensus 81 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l~---~~~iPvV~~~~~~~~- 147 (330)
T 3ctp_A 81 VIEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEYA---NIDIPVVAFENHILD- 147 (330)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGGT---TCCSCEEEESSCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHHH---hcCCCEEEEeccCCC-
Confidence 345566788998765421 1222222222222 25789999 5432111 1121 247889999865321
Q ss_pred HHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. . . +..+. ..+..+++.|.+.. .++|.++.|.... .-+.+.|++.|..+. ..+|...
T Consensus 148 --~~------~--~-V~~D~~~~~~~a~~~L~~~G--~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~ 213 (330)
T 3ctp_A 148 --NI------I--T-ISSDNYNGGRMAFDHLYEKG--CRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHD 213 (330)
T ss_dssp --TS------C--E-EEECHHHHHHHHHHHHHHTT--CCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSS
T ss_pred --CC------C--E-EEeCHHHHHHHHHHHHHHCC--CCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCC
Confidence 11 1 1 11222 22344556665543 3689999876432 235677889998775 3333221
Q ss_pred cCCC----CcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECHHH
Q 022128 214 PVHH----VDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGETT 265 (302)
Q Consensus 214 ~~~~----~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~~T 265 (302)
.... ...+++.. ..+++|+..+-..+- .+++.+.+... .++.++.++..-
T Consensus 214 ~~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~-g~~~al~~~G~~vP~disvvg~D~~~ 270 (330)
T 3ctp_A 214 FQVKMLEEDINSMKDI-VNYDGIFVFNDIAAA-TVMRALKKRGVSIPQEVQIIGFDNSF 270 (330)
T ss_dssp CCGGGGGCCCTTGGGG-GGSSEEEESSHHHHH-HHHHHHHHTTCCTTTTCEEECSBCCT
T ss_pred CCHHHHHHHHHHHhcC-CCCcEEEECCHHHHH-HHHHHHHHcCCCCCCCeEEEEECChH
Confidence 1110 01112222 368999988887777 67777765432 345666665443
No 128
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=77.15 E-value=20 Score=31.55 Aligned_cols=172 Identities=10% Similarity=0.045 Sum_probs=86.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhhHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--l~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (302)
+.+.++++|++++.... . ..+.+...+.++. -.++|+||+.++. .-......+. ..++++++++...
T Consensus 83 i~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~---~~~iPvV~i~~~~--- 152 (349)
T 1jye_A 83 ILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAA---CTNVPALFLDVSD--- 152 (349)
T ss_dssp HHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHH---TTTSCEEESSSCT---
T ss_pred HHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHh---hCCCCEEEEcccC---
Confidence 45566788998875321 1 1111221222222 2578999987432 2122222222 2468899998532
Q ss_pred HHHHhhccCCCCceeccCCCc-cHHHHHHhcccCCCCCCEEEEeCCCcch-------hhHHHHHHhCCCeeEEEeeeeee
Q 022128 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 142 l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~~~~~~vL~~rg~~~~-------~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.. ++.. +..+.+ .+...++.|.+.. .++|.++.|.... .-+.+.|++.|+.+.. ++..
T Consensus 153 --~~------~~~~-V~~d~~~~~~~a~~~L~~~G--~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~- 218 (349)
T 1jye_A 153 --QT------PINS-IIFSHEDGTRLGVEHLVALG--HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--EREG- 218 (349)
T ss_dssp --TS------SSCE-EEECHHHHHHHHHHHHHHHT--CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEEC-
T ss_pred --CC------CCCE-EEEchHHHHHHHHHHHHHCC--CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--cccC-
Confidence 12 3322 122222 2333445555543 3689999886432 2466788888875432 2211
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEECcHHHHHHHHHhhhcccC---CCceEEEECH
Q 022128 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSSWVNLISDTEQ---WSNSVACIGE 263 (302)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~ivftS~s~v~~~~~~~l~~~~~---~~~~i~~IG~ 263 (302)
....+ +.... + ..+++|+..+-..+- .+++.+.+.+. .++.++.++.
T Consensus 219 --~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~-g~~~al~~~G~~vP~disvvGfD~ 275 (349)
T 1jye_A 219 --DWSAMSGFQQTMQMLNEGIVPTAMLVANDQMAL-GAMRAITESGLRVGADISVVGYDD 275 (349)
T ss_dssp --CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHH-HHHHHHHHTTCCBTTTBEEECSBC
T ss_pred --CCChHHHHHHHHHHHhCCCCCCEEEECChHHHH-HHHHHHHHcCCCCCCcEEEEEECC
Confidence 22211 11122 2 358898888877776 66666665432 2345555443
No 129
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=77.11 E-value=20 Score=26.63 Aligned_cols=113 Identities=10% Similarity=0.100 Sum_probs=68.1
Q ss_pred CCCEEEEeCCCc-chhhHHHHHHhCC-CeeEEEeeeeeecCCCCcHHH--HHHc-CCCCEEEEECc----HHHHHHHHHh
Q 022128 177 KKCTVLYPASAK-ASNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTV--LKQA-LSIPVVAVASP----SAVRSSWVNL 247 (302)
Q Consensus 177 ~~~~vL~~rg~~-~~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~--~~~~-~~~d~ivftS~----s~v~~~~~~~ 247 (302)
++.+||++..+. .+..|.+.|+..| +.|.... ...+.+ +... ..+|+|++--. ...+ +++.
T Consensus 19 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~--~~~~ 88 (146)
T 4dad_A 19 GMINILVASEDASRLAHLARLVGDAGRYRVTRTV--------GRAAQIVQRTDGLDAFDILMIDGAALDTAELA--AIEK 88 (146)
T ss_dssp GGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC--------CCHHHHTTCHHHHTTCSEEEEECTTCCHHHHH--HHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC--------CHHHHHHHHHhcCCCCCEEEEeCCCCCccHHH--HHHH
Confidence 457899997765 4678888999888 6653321 111111 1112 47888877432 2333 3444
Q ss_pred hhcccCCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccCC
Q 022128 248 ISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 248 l~~~~~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
+.+.. ...++++++. .....+.+.|... ++.+..+.+.|.+.|...++.+.+
T Consensus 89 l~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~L~~~i~~~~~~~~~ 144 (146)
T 4dad_A 89 LSRLH-PGLTCLLVTTDASSQTLLDAMRAGVRD-VLRWPLEPRALDDALKRAAAQCAQ 144 (146)
T ss_dssp HHHHC-TTCEEEEEESCCCHHHHHHHHTTTEEE-EEESSCCHHHHHHHHHHHHHTCCC
T ss_pred HHHhC-CCCcEEEEeCCCCHHHHHHHHHhCCce-eEcCCCCHHHHHHHHHHHHhhhcc
Confidence 44322 2456666643 3444455678764 667778999999999999876543
No 130
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=76.43 E-value=24 Score=27.09 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=65.6
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece----------------EEeeeCC--CchHHHHHHhcCCCccEEEEeCh
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL----------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~----------------~~~~~~~--~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
+++|+|.-...-...+.+.|.+.|+++..+-. +.+.... +.+.+.+. .+.+.|+||.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEecC
Confidence 45677776554566788888888887765522 1111111 12223322 3678999999876
Q ss_pred HHHHH-HHH-HHHHcCCCCceEEE--EChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 112 EAGSV-FLE-AWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 112 ~av~~-f~~-~l~~~~~~~~~i~a--VG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
+--.. ... .+++.. +..++++ -++...+.+++. |....+.|....++.|+..+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 54322 222 223321 3445554 466777788887 887666666666666766554
No 131
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=76.41 E-value=20 Score=26.28 Aligned_cols=113 Identities=13% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022128 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (302)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~ 124 (302)
....+++|||.-... ....+...|+..|+++..+ .+..+....+.. ..+|.|+....++.+ +++.+.+.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~~~ 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIKEK 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHHHH
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHHhc
Confidence 455678899887654 3456778888888764321 233334444433 468999944445554 55666665
Q ss_pred CCC-CceEEEEChh-hHHHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccC
Q 022128 125 GTP-NVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (302)
Q Consensus 125 ~~~-~~~i~aVG~~-Ta~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~ 174 (302)
. +++++++... ......+.+.. |.. ++..+.. +.+.|...+...
T Consensus 84 --~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 --HSSIVVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp --STTSEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred --CCCccEEEEeCCCCHHHHHHHHHc---CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 4 6777766543 33333333221 654 3566677 888887776543
No 132
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=75.97 E-value=2.2 Score=35.38 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=43.4
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCC-CcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~-~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
...+.+.+++.|.+|+.+.+|+..+... +.....+.+...|.|+|.|| ..++ .|++.+-
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK-~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLK-QWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHH-HHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHH-HHHHHHh
Confidence 4557788888899999999998876432 22334445678899999885 7788 8888763
No 133
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=75.96 E-value=44 Score=29.95 Aligned_cols=104 Identities=14% Similarity=0.108 Sum_probs=57.1
Q ss_pred CCEEEEeCC-Ccch-----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-------HHHHHH
Q 022128 178 KCTVLYPAS-AKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSSW 244 (302)
Q Consensus 178 ~~~vL~~rg-~~~~-----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-------~v~~~~ 244 (302)
+++++++-+ ..++ +.+.+.|.+.|++++.+.+. .....++...+...|.|+|.||. .++ .|
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~-~~ 325 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVA-GT 325 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHH-HH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHHCCEEEEECCccCCCchHHHH-HH
Confidence 456666543 3332 34566777778766444432 22233344445689999999963 577 77
Q ss_pred HHhhhcccCCCceEEEEC---------HHHHHHHHHcCCCeE----EecCCCChHH
Q 022128 245 VNLISDTEQWSNSVACIG---------ETTASAAKRLGLKNV----YYPTHPGLEG 287 (302)
Q Consensus 245 ~~~l~~~~~~~~~i~~IG---------~~Ta~~l~~~G~~~~----~v~~~~~~~~ 287 (302)
++.+......+.+++++| ....+.+.++|+..+ .+...|+.++
T Consensus 326 l~~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~ 381 (402)
T 1e5d_A 326 LQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHAD 381 (402)
T ss_dssp HHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHH
T ss_pred HHHhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecCceEEeeCCCHHH
Confidence 777654222233333322 234556677788642 3345566543
No 134
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=75.90 E-value=40 Score=29.46 Aligned_cols=149 Identities=15% Similarity=0.054 Sum_probs=82.1
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 178 (302)
++.|.||.. +........+.+.+. +++++..+..+. .+.... . ...-..+.|.. .-+..+++.|.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGAD-IITRAM--C-APNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCCG-GGGTTT--C-CTTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCCh-hhcccC--C-CCCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 368999875 344445555656554 466777664332 222210 0 01111122332 2344566666654 34
Q ss_pred CEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE-ECcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf-tS~s~v~~~~~~~l~~ 250 (302)
++|.++..+.. .+.+.+.|++.|..+.....|.... .+....+..+ .++|+|++ .+...+. .+++.+.+
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~dai~~~~~~~~a~-~~~~~~~~ 228 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPD--VEFQSALAEIASLKPDCVYAFFSGGGAL-KFIKDYAA 228 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--CCCHHHHHHHHHHCCSEEEEECCTHHHH-HHHHHHHH
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCC--ccHHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHH
Confidence 68888754432 3567888999999876555554321 2222223322 37898888 7777777 77777776
Q ss_pred ccCCCceEEEEC
Q 022128 251 TEQWSNSVACIG 262 (302)
Q Consensus 251 ~~~~~~~i~~IG 262 (302)
.. ...+++..|
T Consensus 229 ~g-~~vp~~~~~ 239 (375)
T 4evq_A 229 AN-LGIPLWGPG 239 (375)
T ss_dssp TT-CCCCEEEEG
T ss_pred cC-CCceEEecC
Confidence 43 246777665
No 135
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=75.33 E-value=23 Score=35.54 Aligned_cols=111 Identities=14% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-----HHHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-----~av~~f~ 118 (302)
..++|++....++ ..-....|+..|++|+..+.... .+++.+.. .-.+.|.|.++|- ..+..+.
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA-~e~~adiVglSsl~~~~~~~~~~vi 676 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT-----PREVAQQA-VDADVHAVGVSTLAAGHKTLVPELI 676 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC-----HHHHHHHH-HHTTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCC-----HHHHHHHH-HHcCCCEEEEeeecHHHHHHHHHHH
Confidence 4567888775442 23455688999999998665422 23333333 2256888888873 3456677
Q ss_pred HHHHHcCCCCceEEEEC--hhh-HHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 119 EAWKEAGTPNVRIGVVG--AGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG--~~T-a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
+.|++.+.+++++++=| +.. .+.+++. |+...+.|.. +....++.+.
T Consensus 677 ~~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pgt-d~~e~~~~i~ 726 (762)
T 2xij_A 677 KELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPGT-RIPKAAVQVL 726 (762)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTTC-CHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCCC-CHHHHHHHHH
Confidence 77888888778877766 333 6778888 9987666543 5555444443
No 136
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=74.75 E-value=25 Score=32.47 Aligned_cols=108 Identities=11% Similarity=0.071 Sum_probs=56.9
Q ss_pred ccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE
Q 022128 157 FSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV 234 (302)
Q Consensus 157 ~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf 234 (302)
++.-+..+..+++.|... |.+|+++--+. +..+.++..|+.+ |.- +....++++.+ .+.++|++
T Consensus 9 IiG~Gr~G~~va~~L~~~---g~~vvvId~d~---~~v~~~~~~g~~v-----i~G---Dat~~~~L~~agi~~A~~viv 74 (413)
T 3l9w_A 9 IAGFGRFGQITGRLLLSS---GVKMVVLDHDP---DHIETLRKFGMKV-----FYG---DATRMDLLESAGAAKAEVLIN 74 (413)
T ss_dssp EECCSHHHHHHHHHHHHT---TCCEEEEECCH---HHHHHHHHTTCCC-----EES---CTTCHHHHHHTTTTTCSEEEE
T ss_pred EECCCHHHHHHHHHHHHC---CCCEEEEECCH---HHHHHHHhCCCeE-----EEc---CCCCHHHHHhcCCCccCEEEE
Confidence 344444455555555542 34455553332 2234455555322 221 22223344443 67898888
Q ss_pred ECcHHHHHHH--HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEec
Q 022128 235 ASPSAVRSSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 235 tS~s~v~~~~--~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~ 280 (302)
+.+.... +. ...+++.. .+.+++ +-.+.-+..|+++|...++.+
T Consensus 75 ~~~~~~~-n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 75 AIDDPQT-NLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp CCSSHHH-HHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHTTCSSCEET
T ss_pred CCCChHH-HHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHCCCCEEECc
Confidence 8776554 43 23333322 234454 458899999999999986543
No 137
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=74.16 E-value=57 Score=30.45 Aligned_cols=203 Identities=12% Similarity=0.090 Sum_probs=108.5
Q ss_pred CCeEEEe-CC---CCChHHHHHHHHhCCCcEEEeceEE-----------e--eeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-----------H--AQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 50 g~~Ilit-R~---~~~~~~l~~~L~~~G~~v~~~P~~~-----------~--~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
..+|-|. -. ..+..++.+.|++.|+++..+|-+. . .+..+ ..+.+ +.++.+.+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAE-LATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHH-HGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHH-HHhhhhCcEEEEecHH
Confidence 4455554 32 3456789999999999999986441 1 11111 12333 3356666666677887
Q ss_pred HHHHHHHHHHHcCCCCceEEEEC-----hhhHHHHHHHhhccCCCCceeccCCCccH--HHHHHhcccCC--CCCCEEEE
Q 022128 113 AGSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKATG--KILASELPKNG--KKKCTVLY 183 (302)
Q Consensus 113 av~~f~~~l~~~~~~~~~i~aVG-----~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~--e~L~~~L~~~~--~~~~~vL~ 183 (302)
. ....+.|++. -+++++.++ ..|.+.|++..+.- |.+ +|+.... ..+.+.+.+.. ..|+|+.+
T Consensus 247 ~-~~~A~~Le~~--~GiP~~~~~~p~G~~~T~~~l~~la~~~--g~~---~~~~i~~er~r~~~~~~d~~~~l~Gkrv~i 318 (458)
T 3pdi_B 247 L-AGAADALAER--TGVPDRRFGMLYGLDAVDAWLMALAEIS--GNP---VPDRYKRQRAQLQDAMLDTHFMLSSARTAI 318 (458)
T ss_dssp G-HHHHHHHHHH--SCCCEEEECCSCHHHHHHHHHHHHHHHH--SSC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHH--HCCCEEecCCCcCHHHHHHHHHHHHHHH--CCc---hHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 6 4456666553 134455443 45666666542110 442 1221111 11333333211 15889998
Q ss_pred eCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH
Q 022128 184 PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE 263 (302)
Q Consensus 184 ~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~ 263 (302)
..+..-.--+...|.+.|++|..+.++.... .. .. . ..+-|+..-...++ +.+.+. +..++.-|.
T Consensus 319 ~~~~~~~~~l~~~L~elGm~vv~~~~~~~~~--~~-~~----~-~~~~v~~~D~~~le----~~i~~~---~pDllig~~ 383 (458)
T 3pdi_B 319 AADPDLLLGFDALLRSMGAHTVAAVVPARAA--AL-VD----S-PLPSVRVGDLEDLE----HAARAG---QAQLVIGNS 383 (458)
T ss_dssp ECCHHHHHHHHHHHHTTTCEEEEEEESSCCS--CC-TT----T-TSSCEEESHHHHHH----HHHHHH---TCSEEEECT
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEEECCCCh--hh-hh----C-ccCcEEeCCHHHHH----HHHHhc---CCCEEEECh
Confidence 7665545568899999999998887776322 11 10 1 12334443333333 333332 233554555
Q ss_pred HHHHHHHHcCCCeE
Q 022128 264 TTASAAKRLGLKNV 277 (302)
Q Consensus 264 ~Ta~~l~~~G~~~~ 277 (302)
.-...++++|+.-+
T Consensus 384 ~~~~~a~k~gip~~ 397 (458)
T 3pdi_B 384 HALASARRLGVPLL 397 (458)
T ss_dssp THHHHHHHTTCCEE
T ss_pred hHHHHHHHcCCCEE
Confidence 56667778888754
No 138
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=73.84 E-value=43 Score=30.27 Aligned_cols=103 Identities=16% Similarity=0.097 Sum_probs=58.0
Q ss_pred CEEEEeCCCc-c-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc-------HHHHHHHH
Q 022128 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSSWV 245 (302)
Q Consensus 179 ~~vL~~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~ 245 (302)
.+++++-+.. + .+.+.+.|.+.|++++.+.+.+. ....+.+.+...|.|+|.|| ..++ .|+
T Consensus 257 ~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k-~fl 330 (414)
T 2q9u_A 257 KKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVA-AAL 330 (414)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHH-HHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHH-HHH
Confidence 4666654432 2 23466777778877655554322 12233334568999999987 4678 788
Q ss_pred HhhhcccC-CCceEEEEC---------HHHHHHHHH-cCCCeE-----EecCCCChHH
Q 022128 246 NLISDTEQ-WSNSVACIG---------ETTASAAKR-LGLKNV-----YYPTHPGLEG 287 (302)
Q Consensus 246 ~~l~~~~~-~~~~i~~IG---------~~Ta~~l~~-~G~~~~-----~v~~~~~~~~ 287 (302)
+.+..... .+.+++++| ....+.++. .|+..+ .+...|+.+.
T Consensus 331 d~l~~~~~~~~K~~~~~~t~g~~~~a~~~l~~~l~~~~g~~~~~~~~~~~~~~p~~~~ 388 (414)
T 2q9u_A 331 NYVRGLTLIKGKPAFAFGAFGWSNRAVPDIVAELRDGCKADVYDEKGITFKFNYTEEL 388 (414)
T ss_dssp HHHHHHTTTTTSBEEEEEEESSSCCHHHHHHHHHHHTSCCBCCCSSCEEEESCCCHHH
T ss_pred HHHHhhcccCCCEEEEEEecCCCchhHHHHHHHHHhhcCcEEccCccEEEeeCCCHHH
Confidence 77653222 233444332 345556777 787642 2234566554
No 139
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=73.50 E-value=25 Score=30.47 Aligned_cols=197 Identities=10% Similarity=0.015 Sum_probs=94.9
Q ss_pred CCeEEEeCCCCC------hHHHHHHHHhCCCc----EEEeceEEeee-CCCchHHHHHHhcC--CCccEEEEeChHHHHH
Q 022128 50 NPKVVVTRERGK------NGKLIKALAKHRID----CLELPLIQHAQ-GPDTDRLSSVLNAD--TIFDWIIITSPEAGSV 116 (302)
Q Consensus 50 g~~IlitR~~~~------~~~l~~~L~~~G~~----v~~~P~~~~~~-~~~~~~l~~~l~~l--~~~d~IifTS~~av~~ 116 (302)
-.+|-|+.-.+. .+-+.+.|++.|+. +.. ...- ..|...+.+..+++ .++|.||-.+..+.++
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~----~~~~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a 83 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF----DYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQA 83 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE----EEEECTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE----EEEeCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHH
Confidence 345777653321 23477888988864 332 2221 12444343333332 6789888777777665
Q ss_pred HHHHHHHcCCCCceEEEECh--hh-HHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCc--c--
Q 022128 117 FLEAWKEAGTPNVRIGVVGA--GT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK--A-- 189 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG~--~T-a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~--~-- 189 (302)
.... ..+++++..|- -. +...... +..|-.+.-+......+.-++.+.+.....++|.++.... .
T Consensus 84 ~~~~-----~~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 84 LVSA-----TKTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHH-----CSSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHhh-----cCCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 5432 13455554432 11 1111111 0002222212222223343455555444557887774432 2
Q ss_pred --hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-cCCCCEEEEECcHHHHHHHHHhhhcc-cCCCceEEEECH
Q 022128 190 --SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSSWVNLISDT-EQWSNSVACIGE 263 (302)
Q Consensus 190 --~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~ivftS~s~v~~~~~~~l~~~-~~~~~~i~~IG~ 263 (302)
.+.+.+.++..|+++.+..+... ....+.... ..+.|+++...-..+. ...+.+... ...++++++...
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~~~l~~~~d~i~~~~d~~~~-~~~~~i~~~~~~~~iPv~~~~~ 228 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATALKS----ADVQSATQAIAEKSDVIYALIDNTVA-SAIEGMIVAANQAKTPVFGAAT 228 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSSG----GGHHHHHHHHHTTCSEEEECSCHHHH-HTHHHHHHHHHHTTCCEEESSH
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCh----HHHHHHHHhccCCeeEEEEeCCcchh-hHHHHHHHHHhhcCCceeeccc
Confidence 34567778889988765544322 122222322 3688988877666555 333332221 123566766554
No 140
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=73.07 E-value=7 Score=33.93 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=46.0
Q ss_pred CEEEEeCCC---cchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC-------cHHHHHHHHHhh
Q 022128 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSSWVNLI 248 (302)
Q Consensus 179 ~~vL~~rg~---~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS-------~s~v~~~~~~~l 248 (302)
+++|++.|. .+...|.+.|++.|++|+.+..-+. ....+ .+.++|+||+.. +...+ .+.+.+
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~---~~~~~----~L~~yDvIIl~d~~~~~l~~~~~~-~L~~yV 76 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG---LDVGE----LLAKQDLVILSDYPAERMTAQAID-QLVTMV 76 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC---BCSSH----HHHTCSEEEEESCCGGGBCHHHHH-HHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc---ccChh----HHhcCCEEEEcCCccccCCHHHHH-HHHHHH
Confidence 579999764 5668899999999999977664321 11112 256899999974 33444 555555
Q ss_pred hcccCCCceEEEE-CHHH
Q 022128 249 SDTEQWSNSVACI-GETT 265 (302)
Q Consensus 249 ~~~~~~~~~i~~I-G~~T 265 (302)
++ +.-++++ |+..
T Consensus 77 ~~----GGgLi~~gG~~s 90 (259)
T 3rht_A 77 KA----GCGLVMLGGWES 90 (259)
T ss_dssp HT----TCEEEEECSTTS
T ss_pred Hh----CCeEEEecCccc
Confidence 43 3345555 4433
No 141
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=72.60 E-value=29 Score=26.34 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=43.4
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcC-CCCEEEEECc----------HHHHHHHHHhhhcccCCCceEE
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASP----------SAVRSSWVNLISDTEQWSNSVA 259 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~-~~d~ivftS~----------s~v~~~~~~~l~~~~~~~~~i~ 259 (302)
+.+.+.|.+.|++|+.+.+.+.... .+. +.|.|+|-+| ..++ .|++.+......+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~~---------~l~~~~d~ii~g~pty~~~~G~~p~~~~-~fl~~l~~~~l~~k~~~ 89 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASAE---------NLADGYDAVLFGCSAWGMEDLEMQDDFL-SLFEEFDRIGLAGRKVA 89 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCCT---------TTTTTCSEEEEEECEECSSSCEECHHHH-HHHTTGGGTCCTTCEEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCHh---------HhcccCCEEEEEecccCCCCCCCcHHHH-HHHHHhhccCCCCCEEE
Confidence 3566667778877655544332111 134 6787777664 3567 67776654323344444
Q ss_pred EE--C-----------HHHHHHHHHcCCCe
Q 022128 260 CI--G-----------ETTASAAKRLGLKN 276 (302)
Q Consensus 260 ~I--G-----------~~Ta~~l~~~G~~~ 276 (302)
++ | ....+.|++.|++.
T Consensus 90 vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~ 119 (148)
T 3f6r_A 90 AFASGDQEYEHFCGAVPAIEERAKELGATI 119 (148)
T ss_dssp EEEEECTTSSSTTTHHHHHHHHHHHTTCEE
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 44 2 44566677888874
No 142
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=72.60 E-value=52 Score=29.26 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=89.7
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~ 128 (302)
.++||++.+- .++..+.|++.| ++...+. ....+.+++.+. +.++|.++..+..-+ +.+++.+ ++
T Consensus 2 ~~kvlv~~~~--~~~~~~~l~~~~-~v~~~~~---~~~~~~~~~~~~---~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRV--HEEILQLLAPHC-ELITNQT---DSTLTREEILRR---CRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCC--CHHHHHHHTTTC-EEECCCS---SSCCCHHHHHHH---HTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCC--CHHHHHHHHhCC-eEEEecC---CCCCCHHHHHHH---hCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 4689999875 356778888776 5443221 001122344443 467899887544322 1233322 45
Q ss_pred ceEEEE-Chhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-----c--c-------------cC---------
Q 022128 129 VRIGVV-GAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--P-------------KN--------- 174 (302)
Q Consensus 129 ~~i~aV-G~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~-------------~~--------- 174 (302)
+|+++. |.++ .+++.+. |+.+..+|. ++++.+++. | . ++
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 665443 3332 3567777 998876664 333332221 1 0 00
Q ss_pred -CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcH--------HHHHHcCCCCEEEEECcH
Q 022128 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--------TVLKQALSIPVVAVASPS 238 (302)
Q Consensus 175 -~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--------~~~~~~~~~d~ivftS~s 238 (302)
...|++|.++.-..-...+...|+..|.+|. .|.+.+...... .+-+.+...|+|++.-|.
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~ 210 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQ---YHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPL 210 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEE---EECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCC
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCC
Confidence 1157889999776667778999999998764 454433111000 011112457888888774
No 143
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=72.32 E-value=33 Score=26.84 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=52.4
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHH-----HHHHHHhhhcccCCCceEEEEC---
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV-----RSSWVNLISDTEQWSNSVACIG--- 262 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v-----~~~~~~~l~~~~~~~~~i~~IG--- 262 (302)
+.+.+.|.+.|++|..+.+.+. ....++...+..+|.|+|-||.-. . .|++.+......+.+++++|
T Consensus 23 ~~ia~~l~~~g~~v~~~~~~~~----~~~~~~~~~~~~~d~ii~Gspty~g~~p~~-~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 23 QAIINGITKTGVGVDVVDLGAA----VDLQELRELVGRCTGLVIGMSPAASAASIQ-GALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp HHHHHHHHHTTCEEEEEESSSC----CCHHHHHHHHHTEEEEEEECCBTTSHHHHH-HHHHHHHHHCCTTSEEEEECCSS
T ss_pred HHHHHHHHHCCCeEEEEECcCc----CCHHHHHHHHHhCCEEEEEcCcCCCCccHH-HHHHHHHhhcccCCEEEEEEcCC
Confidence 3567778888876654443221 023334444567899999998422 3 44444433222345555554
Q ss_pred ------HHHHHHHHHcCCCeE----EecCCCChHHH
Q 022128 263 ------ETTASAAKRLGLKNV----YYPTHPGLEGW 288 (302)
Q Consensus 263 ------~~Ta~~l~~~G~~~~----~v~~~~~~~~l 288 (302)
....+.+++.|+..+ .+-..|+.+++
T Consensus 98 ~~~~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 133 (159)
T 3fni_A 98 GDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTENTY 133 (159)
T ss_dssp SCBCCHHHHHHHHHHTTCEESSSCBCCSSCCCHHHH
T ss_pred CCcHHHHHHHHHHHHCCCEEecCceEEEeCCCHHHH
Confidence 345667788898742 33455776653
No 144
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=71.58 E-value=30 Score=31.12 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=87.6
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCC
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGT 126 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~ 126 (302)
...++||++++-. ++..+.|++ ++++...+- ..+.+++.+ .+.++|.|+..+...+ +.+++.+
T Consensus 28 ~~~~~vl~~~~~~--~~~~~~L~~-~~~v~~~~~-----~~~~~~~~~---~~~~~d~li~~~~~~i~~~~l~~~----- 91 (340)
T 4dgs_A 28 NVKPDLLLVEPMM--PFVMDELQR-NYSVHRLYQ-----AADRPALEA---ALPSIRAVATGGGAGLSNEWMEKL----- 91 (340)
T ss_dssp -----CEECSCCC--HHHHHTHHH-HSCCEETTC-----GGGHHHHHH---HGGGCCEEEEETTTCBCHHHHHHC-----
T ss_pred CCCCEEEEECCCC--HHHHHHHhc-CCcEEEeCC-----CCCHHHHHH---HhCCcEEEEEcCCCCCCHHHHhhC-----
Confidence 3456799999753 556667754 455543321 112233333 3467899987664333 2223322
Q ss_pred CCceEE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------ccc---------------------
Q 022128 127 PNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK--------------------- 173 (302)
Q Consensus 127 ~~~~i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~--------------------- 173 (302)
+++|++ ..|.++ .+++++. |+.+.-.|. .+++..++. +.+
T Consensus 92 p~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~ 164 (340)
T 4dgs_A 92 PSLGIIAINGVGTDKVDLARARRR------NIDVTTTPG-VLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLP 164 (340)
T ss_dssp SSCCEEEEESSCCTTBCHHHHHHT------TCEEECCCS-SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------C
T ss_pred CCCEEEEECCCCccccCHHHHHhC------CEEEEECCC-CCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcC
Confidence 345553 334443 3566777 998877764 333322221 100
Q ss_pred --CCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc----HHHHHHcCCCCEEEEECcHH
Q 022128 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD----QTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 174 --~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~----~~~~~~~~~~d~ivftS~s~ 239 (302)
....|++|.++.-..-...+...|+..|.+|. +|.+.+..... ..+.+.+...|+|++.-|.+
T Consensus 165 ~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t 233 (340)
T 4dgs_A 165 LGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVR---YWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233 (340)
T ss_dssp CCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE---EECSSCCTTSCCEECSSHHHHHHTCSEEEECC---
T ss_pred ccccccCCEEEEECCCHHHHHHHHHHHHCCCEEE---EEcCCcccccCceecCCHHHHHhcCCEEEEeCCCC
Confidence 01257889988776667788999999998764 55554332110 11222245789999887743
No 145
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=71.02 E-value=10 Score=32.44 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=47.6
Q ss_pred CCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCCCC------cHHHHHHcCCCCEEEEECc------
Q 022128 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------ 237 (302)
Q Consensus 178 ~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------~~~~~~~~~~~d~ivftS~------ 237 (302)
..+||++.|... .+.+.+.+++.|++|+.+.+++....... ..++.+.+...|+|||.||
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~si 113 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAM 113 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSC
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCc
Confidence 358888877542 13456677778999988888764221111 1233444568899999995
Q ss_pred -HHHHHHHHHhhhc
Q 022128 238 -SAVRSSWVNLISD 250 (302)
Q Consensus 238 -s~v~~~~~~~l~~ 250 (302)
..++ +|++.+..
T Consensus 114 pa~LK-n~iD~l~~ 126 (247)
T 2q62_A 114 TGIMK-AQIDWIPL 126 (247)
T ss_dssp CHHHH-HHHHTSCS
T ss_pred cHHHH-HHHHHhhh
Confidence 6789 89988854
No 146
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=70.86 E-value=52 Score=28.53 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=80.7
Q ss_pred CCCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCC-CceeccCCC-ccHHHHHHhcccCCC
Q 022128 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGK 176 (302)
Q Consensus 100 l~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G-~~~~~~p~~-~~~e~L~~~L~~~~~ 176 (302)
-.+.|.||.. +..........+.+. +++++.++... ..+... + .-..+.|.. ..+..+++.|.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAAH-PDYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCC-GGGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCCC-cccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 3678888875 344445555555554 46677765433 222221 2 101122332 3355566666655
Q ss_pred CCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-HHHHHHHHhh
Q 022128 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSSWVNLI 248 (302)
Q Consensus 177 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-~v~~~~~~~l 248 (302)
..++|.++..+. ....+.+.|++.|+.+.....|... .......+..+ .++|+|++.+.. .+. .+++.+
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~-~~~~~~ 214 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAA-PFLRAL 214 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHH-HHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHH-HHHHHH
Confidence 346888875332 2346778899999988665555432 12222233332 478988887766 666 677777
Q ss_pred hcccCCCceEEEE
Q 022128 249 SDTEQWSNSVACI 261 (302)
Q Consensus 249 ~~~~~~~~~i~~I 261 (302)
.+... +.+++..
T Consensus 215 ~~~g~-~~p~~~~ 226 (358)
T 3hut_A 215 RARGS-ALPVYGS 226 (358)
T ss_dssp HHTTC-CCCEEEC
T ss_pred HHcCC-CCcEEec
Confidence 66432 4566544
No 147
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=70.70 E-value=28 Score=25.35 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CC-CCEEEEEC----cHHHHHHHHHhhh
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LS-IPVVAVAS----PSAVRSSWVNLIS 249 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~-~d~ivftS----~s~v~~~~~~~l~ 249 (302)
..+||++..+. .+..+.+.|+..|++|... .. ..+....+ .. +|+|++-- .+..+ +++.++
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~-~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~--~~~~l~ 75 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DG-AEEARLYLHYQKRIGLMITDLRMQPESGLD--LIRTIR 75 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SS-HHHHHHHHHHCTTEEEEEECSCCSSSCHHH--HHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CC-HHHHHHHHHhCCCCcEEEEeccCCCCCHHH--HHHHHH
Confidence 46899988765 4678889999988765321 11 11122222 33 78776632 22333 444454
Q ss_pred cccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 250 DTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 250 ~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
+......++++++ ......+.+.|... ++.+..+.+.|.+.|.+....+
T Consensus 76 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 76 ASERAALSIIVVSGDTDVEEAVDVMHLGVVD-FLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp TSTTTTCEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHC--
T ss_pred hcCCCCCCEEEEeCCCChHHHHHHHhCCcce-EEeCCCCHHHHHHHHHHHhcCc
Confidence 4312346666654 33455666789875 5677789999999999887644
No 148
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=70.69 E-value=7.2 Score=34.26 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=48.1
Q ss_pred CCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCCC----C---cHHHHHHcCCCCEEEEECc-----
Q 022128 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----V---DQTVLKQALSIPVVAVASP----- 237 (302)
Q Consensus 178 ~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~----~---~~~~~~~~~~~d~ivftS~----- 237 (302)
..+||++.|... .+.+.+.+++.|++|+.+.+++...... . ..++.+.+...|+|||.||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~s 137 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ 137 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccC
Confidence 358888877542 1345667778899998888876432111 1 1223444567899999995
Q ss_pred --HHHHHHHHHhhhc
Q 022128 238 --SAVRSSWVNLISD 250 (302)
Q Consensus 238 --s~v~~~~~~~l~~ 250 (302)
..++ +|++.+..
T Consensus 138 ipg~LK-n~IDrl~~ 151 (279)
T 2fzv_A 138 ITSVMK-AQIDHLPL 151 (279)
T ss_dssp ECHHHH-HHHHHSCS
T ss_pred cCHHHH-HHHHHHhh
Confidence 6889 99998864
No 149
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=70.66 E-value=2.9 Score=31.93 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---------HHHHHHHHHHHcCCCCceEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLEAWKEAGTPNVRIGV 133 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---------av~~f~~~l~~~~~~~~~i~a 133 (302)
+.+.+.|++.|+++..+++-+. +.. ++.++|.|||-||. .+..|++.+... +.+.++++
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~----~~~-------~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~ 84 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDV----NID-------ELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVAL 84 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC----CHH-------HHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEEEhhhC----CHH-------HHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEE
Confidence 4455667778887665443222 111 34679999998873 477888877654 67788888
Q ss_pred EC
Q 022128 134 VG 135 (302)
Q Consensus 134 VG 135 (302)
+|
T Consensus 85 f~ 86 (138)
T 5nul_A 85 FG 86 (138)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 150
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=70.61 E-value=26 Score=34.97 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHH-----HHHHHH
Q 022128 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSA-----VRSSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~-----v~~~~~ 245 (302)
..+|++-+-.. +.+.+...|+..|++|..+.+ ...++++.+.. .+.|+|.+.|..+ +. .+.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~-~vi 668 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL------FQTPEETARQAVEADVHVVGVSSLAGGHLTLVP-ALR 668 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT------TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHH-HHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHH-HHH
Confidence 35677654432 345677789999998855333 23334444433 5899999988442 33 344
Q ss_pred HhhhcccCCCceEEEEC--HH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 246 NLISDTEQWSNSVACIG--ET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 246 ~~l~~~~~~~~~i~~IG--~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+.+++....++++++=| +. -.+.+++.|+..++ .+..+...+++.+.+.+.+
T Consensus 669 ~~L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f-~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 669 KELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIY-TPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEE-CTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEE-cCCccHHHHHHHHHHHHHH
Confidence 55544433345666554 22 35778999998754 5556888888888777653
No 151
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=70.59 E-value=30 Score=30.85 Aligned_cols=167 Identities=11% Similarity=0.073 Sum_probs=88.5
Q ss_pred CeEEEeCCCCChHHHHHHHHh-C-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCC
Q 022128 51 PKVVVTRERGKNGKLIKALAK-H-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~-~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~ 127 (302)
|+|+++..........+.|++ . |+++...+-. .. +++ .+.+.++|.++..+..-+ +.+++.+.+.
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~--- 69 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PET---VALAKGADGVVVYQQLDYIAETLQALADN--- 69 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TTT---GGGGTTCSEEEECCSSCBCHHHHHHHHHT---
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HHH---HHHhcCCcEEEEcCCCCCCHHHHHhcccc---
Confidence 678887654445556666665 3 6666544321 11 112 223577898887542111 2344555442
Q ss_pred CceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-----c--c-------------cC--------
Q 022128 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--P-------------KN-------- 174 (302)
Q Consensus 128 ~~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~-------------~~-------- 174 (302)
++|+++ .|.++ .+++++. |+.+..+|. ++++.+++. | . .|
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 70 GITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred CCeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 244433 23322 3556777 998877664 333332221 0 0 01
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC------CcHHHHHHcCCCCEEEEECcHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~------~~~~~~~~~~~~d~ivftS~s~ 239 (302)
...+++|.++.-..-...+.+.|+..|++|. +|.+.+... .....-+.+...|+|++.-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 210 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI---TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDV 210 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCC
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEE---EECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCc
Confidence 1157889999776667778999999998764 454432210 0001111134678888887743
No 152
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=70.35 E-value=12 Score=31.58 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=37.7
Q ss_pred hHHHHHHhC-CCeeEEEeeeeeecC-----------------C--CCcHHHHHHcCCCCEEEEECc-------HHHHHHH
Q 022128 192 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSSW 244 (302)
Q Consensus 192 ~L~~~L~~~-G~~v~~~~vY~~~~~-----------------~--~~~~~~~~~~~~~d~ivftS~-------s~v~~~~ 244 (302)
.+.+.|++. |.+|+.+.+++.... . ....++.+.+...|+|+|.|| ..++ .|
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK-~~ 101 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTK-NF 101 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHH-HH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHH-HH
Confidence 455566666 888888877754221 1 222334445568899999996 6888 88
Q ss_pred HHhhh
Q 022128 245 VNLIS 249 (302)
Q Consensus 245 ~~~l~ 249 (302)
++.+.
T Consensus 102 iDr~~ 106 (242)
T 1sqs_A 102 IERIG 106 (242)
T ss_dssp HHHTG
T ss_pred HHHHH
Confidence 88873
No 153
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=70.12 E-value=27 Score=25.11 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=63.7
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~~ 251 (302)
.+||++..+. .+..+.+.|+..|+.|... . ...+.++.+ ..+|+|++-- ....+ +++.+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~-~~~~a~~~l~~~~~dlii~D~~l~~~~g~~--~~~~l~~~ 72 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYV--------M-SGTDALHAMSTRGYDAVFIDLNLPDTSGLA--LVKQLRAL 72 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------S-SHHHHHHHHHHSCCSEEEEESBCSSSBHHH--HHHHHHHS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------C-CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH--HHHHHHhh
Confidence 5788887765 4678899999998654321 1 122222222 5789888752 22333 44444443
Q ss_pred c-CCCceEEEECHHHH---HHHHHcCCCeEEecCCCChHHHHHHHHHHHHccCC
Q 022128 252 E-QWSNSVACIGETTA---SAAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 252 ~-~~~~~i~~IG~~Ta---~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
. ....++++++.... ..+...|... ++.+..+.+.|.+.+..+.+.+.+
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACELFDF-YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHHHCSE-EEESSCCHHHHHHHHHHHC-----
T ss_pred hccCCCCEEEEECCcchhHHHHHHHhhHH-heeCCCCHHHHHHHHHHhhccCCC
Confidence 1 23566766643221 3344567654 677888999999999988775543
No 154
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=69.83 E-value=41 Score=28.63 Aligned_cols=85 Identities=9% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--fTS~~av~~f~~~ 120 (302)
..+.|++||||-.. +-...+++.|.+.|++++.+-.-. ..+.+.+......+..++. +++..+++.+++.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-----~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-----FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-----CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-----HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 46779999999854 246779999999999876542211 1123333322233333332 4788899998887
Q ss_pred HHHc-CCCCceEEEEC
Q 022128 121 WKEA-GTPNVRIGVVG 135 (302)
Q Consensus 121 l~~~-~~~~~~i~aVG 135 (302)
+.+. +.-++-|.+.|
T Consensus 97 ~~~~~g~id~li~nAg 112 (280)
T 3nrc_A 97 LGKVWDGLDAIVHSIA 112 (280)
T ss_dssp HHHHCSSCCEEEECCC
T ss_pred HHHHcCCCCEEEECCc
Confidence 7654 22234444444
No 155
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=69.63 E-value=11 Score=34.85 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCeEEEeCCCC------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHH
Q 022128 50 NPKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (302)
Q Consensus 50 g~~IlitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-------av~~ 116 (302)
..+|+|....- -++.+++.|++.|++++.+-+..... .+ +...+..+.++|.|+|-||. .+..
T Consensus 265 ~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~-~~---~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~ 340 (410)
T 4dik_A 265 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER-PA---ISEILKDIPDSEALIFGVSTYEAEIHPLMRF 340 (410)
T ss_dssp TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC-CC---HHHHHHHSTTCSEEEEEECCTTSSSCHHHHH
T ss_pred ccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC-CC---HHHHHHHHHhCCeEEEEeCCcCCcCCHHHHH
Confidence 34566654321 24667778889999988665555442 22 33445567899999998885 6677
Q ss_pred HHHHHHHcCCCCceEEEECh
Q 022128 117 FLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG~ 136 (302)
|+..+......+.++++.|.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHHhcccCCCEEEEEEC
Confidence 77777776667888888884
No 156
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=69.26 E-value=5.6 Score=32.50 Aligned_cols=70 Identities=7% Similarity=0.181 Sum_probs=40.8
Q ss_pred EEEEeCCCc---c-hh----hHHHH-HHhCCCeeEEEeeeeeec--------CCCCcHHHHHHcCCCCEEEEECc-----
Q 022128 180 TVLYPASAK---A-SN----EIEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP----- 237 (302)
Q Consensus 180 ~vL~~rg~~---~-~~----~L~~~-L~~~G~~v~~~~vY~~~~--------~~~~~~~~~~~~~~~d~ivftS~----- 237 (302)
+|+++.|.. + .. .+.+. |.+.|.+++.+.+++... .+.......+.+...|.|+|.||
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~ 83 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKAS 83 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTB
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCC
Confidence 566665542 2 22 34555 666788887777655321 01111223334567899999986
Q ss_pred --HHHHHHHHHhhhc
Q 022128 238 --SAVRSSWVNLISD 250 (302)
Q Consensus 238 --s~v~~~~~~~l~~ 250 (302)
..++ .|++.+..
T Consensus 84 ~p~~lK-~~ld~l~~ 97 (197)
T 2vzf_A 84 YTGLLK-AFLDILPQ 97 (197)
T ss_dssp CCHHHH-HHHTTSCT
T ss_pred CCHHHH-HHHHhccc
Confidence 4678 78887754
No 157
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=68.75 E-value=15 Score=31.01 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=45.3
Q ss_pred CCCEEEEEC---------cHHHHHHHHHhhhccc--CCCceEEEECHHHHHHHHHcCCCeE--E--ecCCCChH---HHH
Q 022128 228 SIPVVAVAS---------PSAVRSSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV--Y--YPTHPGLE---GWV 289 (302)
Q Consensus 228 ~~d~ivftS---------~s~v~~~~~~~l~~~~--~~~~~i~~IG~~Ta~~l~~~G~~~~--~--v~~~~~~~---~ll 289 (302)
+..+|++|| .+.++ ...+.+.+.. ..+..+++||.+....+++.|...+ + +.+.|+.+ .+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k-~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~ 135 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFK-KLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPV 135 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHH-HHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCSHHHHHHH
T ss_pred cEEEEEEeCCccccccccHHHHH-HHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHH
Confidence 345899999 77777 6666654421 1246799999999999999888743 1 23456655 444
Q ss_pred HHHHHHHH
Q 022128 290 DSILEALR 297 (302)
Q Consensus 290 ~~i~~~~~ 297 (302)
+.+.+.+.
T Consensus 136 ~~i~~~~~ 143 (230)
T 1fs0_G 136 KVMLQAYD 143 (230)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44544443
No 158
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=68.43 E-value=11 Score=32.93 Aligned_cols=109 Identities=13% Similarity=-0.013 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc-HHHHH-HcCCCCEEEEECcHHHHHHHHHhhhcccCC
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QTVLK-QALSIPVVAVASPSAVRSSWVNLISDTEQW 254 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~-~~~~~d~ivftS~s~v~~~~~~~l~~~~~~ 254 (302)
+|+||.++..- +. .+.+.+.+++ +.+.++.|.+... ....+ .+...|++++|...-+...+-.++...+ .
T Consensus 140 ~g~kV~vIG~f---P~-i~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~-~ 211 (270)
T 3l5o_A 140 KGKKVGVVGHF---PH-LESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSR-N 211 (270)
T ss_dssp TTSEEEEESCC---TT-HHHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-T
T ss_pred CCCEEEEECCc---hh-HHHHHhcCCC---EEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCC-C
Confidence 57899998643 33 3456666655 4666777655432 22222 3578899999999888722333333221 1
Q ss_pred CceEEEECHHHHH--HHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 255 SNSVACIGETTAS--AAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 255 ~~~i~~IG~~Ta~--~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
...++.+||+|-- .+-++|+..+.-..-.+.+.+++.+.
T Consensus 212 a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 212 ARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVA 252 (270)
T ss_dssp SSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHT
T ss_pred CCEEEEECCCchhhHHHHhcCcCEEEEEEEcCHHHHHHHHh
Confidence 2467789998742 25567888643333356777777664
No 159
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=67.99 E-value=61 Score=28.21 Aligned_cols=145 Identities=11% Similarity=-0.019 Sum_probs=80.3
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCC-CceeccCCC-ccHHHHHHhcccCCCC
Q 022128 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPSK-ATGKILASELPKNGKK 177 (302)
Q Consensus 101 ~~~d~Iif-TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G-~~~~~~p~~-~~~e~L~~~L~~~~~~ 177 (302)
++.+.||- .+........+.+.+. +++++..+.... .+... + .-..+.|.. ..+..+++.+.+.. .
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~~~-~~~~~------~~~~f~~~~~~~~~~~~~~~~l~~~~-g 148 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPASTNP-LVTQG------RKFVSRVCFIDPFQGAAMAVFAYKNL-G 148 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCCCG-GGTTT------CSSEEESSCCHHHHHHHHHHHHHHTS-C
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCCCc-cccCC------CCCEEEEeCCcHHHHHHHHHHHHHhc-C
Confidence 45889984 4555566666666654 567777665332 22111 1 111122322 23445666664432 2
Q ss_pred CCEEEEeCC-Cc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE-ECcHHHHHHHHHhh
Q 022128 178 KCTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLI 248 (302)
Q Consensus 178 ~~~vL~~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf-tS~s~v~~~~~~~l 248 (302)
.++|.++.+ +. ..+.+.+.|++.|..+.... |... ..+....+..+ .++|+|++ .+...+. .++..+
T Consensus 149 ~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~ 224 (366)
T 3td9_A 149 AKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIA-LISRQA 224 (366)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHH-HHHHHH
T ss_pred CcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHH-HHHHHH
Confidence 368887743 11 12467788999999886655 6542 22222223333 57899888 7777777 777777
Q ss_pred hcccCCCceEEEE
Q 022128 249 SDTEQWSNSVACI 261 (302)
Q Consensus 249 ~~~~~~~~~i~~I 261 (302)
.+... +.+++..
T Consensus 225 ~~~g~-~~~~~~~ 236 (366)
T 3td9_A 225 RQLGF-TGYILAG 236 (366)
T ss_dssp HHTTC-CSEEEEC
T ss_pred HHcCC-CceEEee
Confidence 66432 4565543
No 160
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=67.81 E-value=34 Score=25.21 Aligned_cols=112 Identities=8% Similarity=0.057 Sum_probs=67.8
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~~ 250 (302)
..+||++..+. .+..+.+.|+..|+.+....+ . ...+..+.+ ..+|+|++--. ...+ +++.+++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~------~-~~~~a~~~l~~~~~dlii~D~~l~~~~g~~--~~~~lr~ 75 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFV------D-NGAKALYQVQQAKYDLIILDIGLPIANGFE--VMSAVRK 75 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEE------S-SHHHHHHHHTTCCCSEEEECTTCGGGCHHH--HHHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEE------C-CHHHHHHHhhcCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 35889887765 467888899999876321111 1 112233333 46888777422 2233 4455554
Q ss_pred c-cCCCceEEEEC----HHHHHHHHHcCCCeEEecCCC-ChHHHHHHHHHHHHcc
Q 022128 251 T-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~-~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~-~~~~ll~~i~~~~~~~ 299 (302)
. ....+++++++ +.....+.+.|... ++.+.. +.+.|.+.|...++.+
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAAGASS-VVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHTTCSE-EEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCcHHHHHHHHHHHHHHH
Confidence 2 12356677665 44555666789875 566777 8999999998887643
No 161
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=67.44 E-value=34 Score=25.03 Aligned_cols=110 Identities=10% Similarity=0.133 Sum_probs=67.0
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~ 250 (302)
..+||++..+.. +..+.+.|...|++|... . ...+.++.+ ..+|+|++-- ....+ +++.+++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~--~~~~l~~ 74 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV---H------SAAQALEQVARRPYAAMTVDLNLPDQDGVS--LIRALRR 74 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE---C------SHHHHHHHHHHSCCSEEEECSCCSSSCHHH--HHHHHHT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 468999977654 577888899999765221 1 122223222 5788887742 22333 4444544
Q ss_pred c-cCCCceEEEECHHHHH-H----HHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 T-EQWSNSVACIGETTAS-A----AKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~-~~~~~~i~~IG~~Ta~-~----l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
. ....+++++++..... . +.+.|... ++.+..+.+.|.+.|...++.+
T Consensus 75 ~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 75 DSRTRDLAIVVVSANAREGELEFNSQPLAVST-WLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp SGGGTTCEEEEECTTHHHHHHHHCCTTTCCCE-EECSSCCHHHHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEecCCChHHHHHHhhhcCCCE-EEeCCCCHHHHHHHHHHHHHhc
Confidence 2 1235777777654433 2 22356654 5677789999999999988654
No 162
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=67.34 E-value=58 Score=27.74 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHH
Q 022128 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSW 244 (302)
Q Consensus 177 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~ 244 (302)
.+.+|++.+..+ +...+...|+..|++|..+-. ..+. +++.+.. .++|+|.+++.. .++ .+
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~--~vp~----e~l~~~~~~~~~d~V~lS~l~~~~~~~~~-~~ 194 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGR--DVPA----EEVLAAVQKEKPIMLTGTALMTTTMYAFK-EV 194 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEE--ECCS----HHHHHHHHHHCCSEEEEECCCTTTTTHHH-HH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCH----HHHHHHHHHcCCCEEEEEeeccCCHHHHH-HH
Confidence 456888877653 456778889999998866655 2222 2333322 488999888732 344 45
Q ss_pred HHhhhcccCCCceEEEECHHHHHH-HHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 245 VNLISDTEQWSNSVACIGETTASA-AKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 245 ~~~l~~~~~~~~~i~~IG~~Ta~~-l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
.+.+++... ++++++-|..+... .++.|. +..+. +..+.++.+.+.+.
T Consensus 195 i~~l~~~~~-~~~v~vGG~~~~~~~~~~iga--d~~~~--da~~av~~~~~l~~ 243 (258)
T 2i2x_B 195 NDMLLENGI-KIPFACGGGAVNQDFVSQFAL--GVYGE--EAADAPKIADAIIA 243 (258)
T ss_dssp HHHHHTTTC-CCCEEEESTTCCHHHHHTSTT--EEECS--STTHHHHHHHHHHT
T ss_pred HHHHHhcCC-CCcEEEECccCCHHHHHHcCC--eEEEC--CHHHHHHHHHHHHc
Confidence 555655333 48888888655443 445564 33333 44566677666654
No 163
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=67.03 E-value=19 Score=34.29 Aligned_cols=197 Identities=14% Similarity=0.080 Sum_probs=101.6
Q ss_pred CChHHHHHHHHhCCCcEEE-eceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHH-HcCCCCceEEEEC-h
Q 022128 60 GKNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK-EAGTPNVRIGVVG-A 136 (302)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~-~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~-~~~~~~~~i~aVG-~ 136 (302)
++..++.+.|++.|+++.. +|. ....+++. ++.+.+.-+..++..-....+.|+ +.+.+-+...=+| .
T Consensus 183 gD~~eik~lL~~~Gi~v~~~~~g-----g~~~~ei~----~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~ 253 (511)
T 2xdq_B 183 HDCRELKQLMADLGIQVNLVIPA-----AATVHDLQ----RLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVV 253 (511)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEET-----TCCTTTGG----GGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHH
T ss_pred cHHHHHHHHHHHCCCeEEEEECC-----cCcHHHHH----hhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHH
Confidence 3457899999999999983 221 11223232 444555555555543344445553 3455544445677 6
Q ss_pred hhHHHHHHHhhccCCCCceeccCC-CccHHH--H-------HHhcccCCCCCCEEEEeCCCcchhhHHHHH-HhCCCeeE
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPS-KATGKI--L-------ASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVV 205 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~--L-------~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L-~~~G~~v~ 205 (302)
.|.+.|++..+.- |..-.-.|. ..-.+. + ...+......|+++++..+..-.--+...| .+.|++|.
T Consensus 254 ~T~~~L~~ia~~~--g~~~~~~~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm~vv 331 (511)
T 2xdq_B 254 ETARCIRAIQGVL--NAQGAGVNYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVV 331 (511)
T ss_dssp HHHHHHHHHHHHH--HTTTCCCCCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHh--CCCcCCCChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCCEEE
Confidence 7887777762100 210000111 111111 1 101111222678999886666667788999 79999986
Q ss_pred EEeeeeeecCCCCcHHHHHHcC-CCCEEEEE-CcHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEE
Q 022128 206 RLNTYTTEPVHHVDQTVLKQAL-SIPVVAVA-SPSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 278 (302)
Q Consensus 206 ~~~vY~~~~~~~~~~~~~~~~~-~~d~ivft-S~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~ 278 (302)
.+-.|... ......+.+. ..+-+++. ....++ .+++.. +..++.-|..-...+++.|+..+.
T Consensus 332 ~~gt~~~~----~~~~~~~~l~~~~~~v~~~~D~~el~-~~i~~~------~pDl~ig~~~~r~~a~k~gip~~~ 395 (511)
T 2xdq_B 332 WAGTYCKY----DADWFRAEVAGFCDEVLITDDHTVVG-DAIARV------EPAAIFGTQMERHVGKRLNIPCGV 395 (511)
T ss_dssp EEEESCGG----GHHHHHHHHTTTSSEEEECCCHHHHH-HHHHHH------CCSEEEECHHHHHHHHHHTCCEEE
T ss_pred EeecCCCC----chHHHHHHHHhcCCcEEEeCCHHHHH-HHHHhc------CCCEEEeccchHHHHHhcCCCeEe
Confidence 55554322 1111122222 22344444 555555 443333 234555566666667888887544
No 164
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=66.92 E-value=11 Score=33.01 Aligned_cols=110 Identities=14% Similarity=-0.003 Sum_probs=69.0
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-cHHHHH-HcCCCCEEEEECcHHHHHHHHHhhhcccCC
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLK-QALSIPVVAVASPSAVRSSWVNLISDTEQW 254 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~-~~~~~d~ivftS~s~v~~~~~~~l~~~~~~ 254 (302)
++++|.++... +.+.+.|+ .|+ ++.+++..+.+.. +....+ .+...|+|+.|.+.-+...+-.++.... .
T Consensus 140 ~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~-~ 211 (270)
T 2h1q_A 140 KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSR-N 211 (270)
T ss_dssp TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTT-T
T ss_pred CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCc-c
Confidence 57899988874 45666664 455 4577787775432 222222 3578999999999888733444443322 2
Q ss_pred CceEEEECHHHHHH--HHHcCCCeEEecCCCChHHHHHHHHH
Q 022128 255 SNSVACIGETTASA--AKRLGLKNVYYPTHPGLEGWVDSILE 294 (302)
Q Consensus 255 ~~~i~~IG~~Ta~~--l~~~G~~~~~v~~~~~~~~ll~~i~~ 294 (302)
...++.+||+|.-. +-++|+..+.-..--+.+.+++.|.+
T Consensus 212 a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~D~~~~~~~i~~ 253 (270)
T 2h1q_A 212 ARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp SSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTT
T ss_pred CCeEEEEecChhhhHHHHhcCcCEEEEeEecCHHHHHHHHHc
Confidence 34788899987432 44578886533333577777777654
No 165
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=66.86 E-value=27 Score=32.55 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=80.9
Q ss_pred CeEEEeCCCCCh--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCC
Q 022128 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (302)
Q Consensus 51 ~~IlitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~ 128 (302)
++|-+.-.-... .++.+.|++.|+++..++.- ...++ +.++...+..+..++..- ...+.|++.. +
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~~-----~~~~e----l~~~~~A~~ni~~~~~~~-~~A~~Le~~~--g 264 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLPA-----KRYTE----LPVIDEGYYVAGVNPFLS-RTATTLIRRR--K 264 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEESC-----SSGGG----CCCCCTTCEEEESSTTCH-HHHHHHHHTT--C
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeCC-----CCHHH----HHccccCcEEEEcCHhHH-HHHHHHHHHc--C
Confidence 345444433322 46899999999999874222 22232 235666677777777653 4455554431 3
Q ss_pred ceEEE----EC-hhhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHh
Q 022128 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (302)
Q Consensus 129 ~~i~a----VG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~ 199 (302)
++.+. +| ..|.+.|++..+. -|.+ |+... ...+...+.... ..|+|+++..+..-.-.+...|.+
T Consensus 265 iP~~~~~~P~G~~~T~~~Lr~ia~~--~g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~e 338 (460)
T 2xdq_A 265 CQLITAPFPIGPDGTRTWIEQICAT--FGIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIR 338 (460)
T ss_dssp CEEECCCCSBHHHHHHHHHHHHHHH--TTCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHH
T ss_pred CCceecCcCccHHHHHHHHHHHHHH--HCcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHH
Confidence 33333 55 7788777766211 1433 22111 122333343221 168899998777767788999999
Q ss_pred CCCeeEEEe
Q 022128 200 RGFEVVRLN 208 (302)
Q Consensus 200 ~G~~v~~~~ 208 (302)
.|++|..+-
T Consensus 339 lGm~vv~~g 347 (460)
T 2xdq_A 339 CGMRVLEIG 347 (460)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEeC
Confidence 999987643
No 166
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=66.84 E-value=8.7 Score=33.32 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=45.4
Q ss_pred CCeEEEeCC---CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-------hHHHHHHHH
Q 022128 50 NPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-------PEAGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~---~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS-------~~av~~f~~ 119 (302)
+++||+.-. ......+.+.|++.|++|..++.-++-. +.+ .+.+||.||+.. +..++.+.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~-------~L~~yDvIIl~d~~~~~l~~~~~~~L~~ 74 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGE-------LLAKQDLVILSDYPAERMTAQAIDQLVT 74 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSH-------HHHTCSEEEEESCCGGGBCHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccccc--Chh-------HHhcCCEEEEcCCccccCCHHHHHHHHH
Confidence 467888853 2456778899999999998877554321 212 356899999974 233344444
Q ss_pred HHHHcCCCCceEEEECh
Q 022128 120 AWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (302)
... .+--++++|.
T Consensus 75 yV~----~GGgLi~~gG 87 (259)
T 3rht_A 75 MVK----AGCGLVMLGG 87 (259)
T ss_dssp HHH----TTCEEEEECS
T ss_pred HHH----hCCeEEEecC
Confidence 333 2455666654
No 167
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=66.80 E-value=65 Score=30.54 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.8
Q ss_pred cCCCCCCCeEEEeCCC-CChHHHHHHHHhCCCcEEEe
Q 022128 44 ASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 44 ~~~~l~g~~IlitR~~-~~~~~l~~~L~~~G~~v~~~ 79 (302)
.++||.|.+|...-.. .+...+.+.|.+.|++|...
T Consensus 69 ~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~ 105 (494)
T 3d64_A 69 AQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWA 105 (494)
T ss_dssp TTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4689999999995543 46677999999999999643
No 168
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=66.75 E-value=37 Score=27.68 Aligned_cols=68 Identities=12% Similarity=0.139 Sum_probs=43.8
Q ss_pred cCCCccEEEEeChHHHHHHHH-HHHHcCCCCceEE--EEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 99 ADTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 99 ~l~~~d~IifTS~~av~~f~~-~l~~~~~~~~~i~--aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.+.++|.||.+.++......- ...+......+++ +-++...+.+++. |....+.|....+..|+..+.
T Consensus 62 ~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 62 EVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp TCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred CcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 467899999988766544322 2222222344555 4577888889888 998667776666777766553
No 169
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=66.21 E-value=61 Score=27.55 Aligned_cols=94 Identities=7% Similarity=0.052 Sum_probs=52.2
Q ss_pred EEEEeC--CCcchhhHHHHHHhC-CCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEE-EECcHHHHHHHHHhhhcccCCC
Q 022128 180 TVLYPA--SAKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSSWVNLISDTEQWS 255 (302)
Q Consensus 180 ~vL~~r--g~~~~~~L~~~L~~~-G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~iv-ftS~s~v~~~~~~~l~~~~~~~ 255 (302)
||.+.. |.-++. +.+.+.+. |+++. .++++. .+.+++.. ..+|+++ ||+|+++. ..+..+.+. +
T Consensus 2 kV~V~Ga~G~mG~~-i~~~~~~~~~~elv--a~~d~~---~dl~~~~~--~~~DvvIDfT~p~a~~-~~~~~a~~~---g 69 (245)
T 1p9l_A 2 RVGVLGAKGKVGTT-MVRAVAAADDLTLS--AELDAG---DPLSLLTD--GNTEVVIDFTHPDVVM-GNLEFLIDN---G 69 (245)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHCTTCEEE--EEECTT---CCTHHHHH--TTCCEEEECSCTTTHH-HHHHHHHHT---T
T ss_pred EEEEECCCCHHHHH-HHHHHHhCCCCEEE--EEEccC---CCHHHHhc--cCCcEEEEccChHHHH-HHHHHHHHc---C
Confidence 566665 444444 55556544 76653 344431 22333322 3789999 99999999 666655442 3
Q ss_pred ceEEE----ECHHHHHHHHHc-----CCCeEEecCCCChH
Q 022128 256 NSVAC----IGETTASAAKRL-----GLKNVYYPTHPGLE 286 (302)
Q Consensus 256 ~~i~~----IG~~Ta~~l~~~-----G~~~~~v~~~~~~~ 286 (302)
+++++ ..+.-.+.++++ +.. ++++.+.+..
T Consensus 70 ~~~VigTTG~~~e~~~~l~~aa~~~~~~~-vv~a~N~siG 108 (245)
T 1p9l_A 70 IHAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNFAIG 108 (245)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTSTTCE-EEECSCCCHH
T ss_pred CCEEEcCCCCCHHHHHHHHHHHHhCCCCC-EEEECCccHH
Confidence 45544 344434444443 554 4567776665
No 170
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=65.44 E-value=58 Score=28.99 Aligned_cols=104 Identities=11% Similarity=0.010 Sum_probs=54.8
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceE
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSV 258 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i 258 (302)
..|++.+|+...+.+.+.+++.+.++... -| -.+..+. +...|.++--|. .- .+.+.+.- +++.
T Consensus 212 ~~vi~~~G~~~~~~~~~~~~~~~~~~~v~-~f-----~~dm~~~---l~~aDlvI~raG--~~-Tv~E~~a~----G~P~ 275 (365)
T 3s2u_A 212 PAIRHQAGRQHAEITAERYRTVAVEADVA-PF-----ISDMAAA---YAWADLVICRAG--AL-TVSELTAA----GLPA 275 (365)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCCCEEE-SC-----CSCHHHH---HHHCSEEEECCC--HH-HHHHHHHH----TCCE
T ss_pred eEEEEecCccccccccceecccccccccc-cc-----hhhhhhh---hccceEEEecCC--cc-hHHHHHHh----CCCe
Confidence 35566666655555566666655543221 11 1111222 234577665443 23 33343322 3454
Q ss_pred EEE-------CHH--HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 259 ACI-------GET--TASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 259 ~~I-------G~~--Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+.| +.. -|+.+.+.|.-.++..+..+.+.|.++|.+.+..
T Consensus 276 Ilip~p~~~~~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d 324 (365)
T 3s2u_A 276 FLVPLPHAIDDHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMH 324 (365)
T ss_dssp EECC-----CCHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC
T ss_pred EEeccCCCCCcHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCC
Confidence 443 222 2567888888654333446889999999887754
No 171
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=65.19 E-value=6.8 Score=35.49 Aligned_cols=170 Identities=11% Similarity=0.009 Sum_probs=88.6
Q ss_pred CCeEEEeCCCCChHHHHH-HHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HH-HHHHHHHcCC
Q 022128 50 NPKVVVTRERGKNGKLIK-ALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SV-FLEAWKEAGT 126 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~-~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~-f~~~l~~~~~ 126 (302)
+|+|+++...+...++.+ .+++.|+++...+-. .. ++ .++.+.++|.|+..+..-+ +. +++.+...
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~--~~---~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~-- 69 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA----LT--SA---TVDLAEGCSSVSLKPLGPVDEEVVYQKLSEY-- 69 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC----CS--TT---GGGGGTTCSEEEECCSSCBCCHHHHHHHHHT--
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCC----CC--HH---HHHHhcCCcEEEEcCCCCcCHHHHHHhcccc--
Confidence 378999886655555544 456779888766631 11 11 2335678999987653322 22 55555442
Q ss_pred CCceEE-EEChhhH----HHHHHHhhccCCCCceeccCCCccHHHHHHh-----c-------------c---c--C----
Q 022128 127 PNVRIG-VVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L-------------P---K--N---- 174 (302)
Q Consensus 127 ~~~~i~-aVG~~Ta----~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L-------------~---~--~---- 174 (302)
++|++ ..|.++- +++++. |+.+.-+|. ++++.+++. | . + +
T Consensus 70 -~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~ 141 (343)
T 2yq5_A 70 -GVKCIGLRIVGFNTINFDWTKKY------NLLVTNVPV-YSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNL 141 (343)
T ss_dssp -TCCEEEESSSCCTTBCSSTTCC--------CEEECCSC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGG
T ss_pred -CceEEEECceeecccchhHHHhC------CEEEEECCC-CCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCC
Confidence 23332 2232221 233344 666655543 222222110 0 0 0 1
Q ss_pred ---CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc--HHHHHHcCCCCEEEEECcH
Q 022128 175 ---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 175 ---~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~~~~d~ivftS~s 238 (302)
...|++|.++.-..-...+...|+..|.+|..+..|......... ..+-+.+...|+|++.-|.
T Consensus 142 ~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Pl 210 (343)
T 2yq5_A 142 ISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPL 210 (343)
T ss_dssp CBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCC
Confidence 114788999976666677899999999887555444322111100 0111123467888888874
No 172
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=64.70 E-value=48 Score=25.81 Aligned_cols=91 Identities=14% Similarity=0.203 Sum_probs=48.2
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHH-----HHHHHHhhhcccCCCceEEEEC----
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAV-----RSSWVNLISDTEQWSNSVACIG---- 262 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v-----~~~~~~~l~~~~~~~~~i~~IG---- 262 (302)
.+.+.|.+.|++|..+.+- .....++...+.++|.|+|-||.-. + .|++.+......+.+++++|
T Consensus 20 ~ia~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~-~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 20 AIGRGLVKTGVAVEMVDLR-----AVDPQELIEAVSSARGIVLGTPPSQPSEAVA-TALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHTTCCEEEEETT-----TCCHHHHHHHHHHCSEEEEECCBSSCCHHHH-HHHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHhCCEEEEEcCCcCCchhHH-HHHHHHHhhhhCCCEEEEEEcCCC
Confidence 4566677778765433321 1222333333456788888887311 3 45554433222334555443
Q ss_pred -----HHHHHHHHHcCCCeE----EecCCCChHHH
Q 022128 263 -----ETTASAAKRLGLKNV----YYPTHPGLEGW 288 (302)
Q Consensus 263 -----~~Ta~~l~~~G~~~~----~v~~~~~~~~l 288 (302)
....+.+++.|+..+ .+-..|+.+++
T Consensus 94 ~g~a~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl 128 (161)
T 3hly_A 94 DDEPIDALLAQFRNLGLHTAFPPIRVKDQPTEAIY 128 (161)
T ss_dssp SBCCHHHHHHHHHHTTCEESSSCBCCCSSCCHHHH
T ss_pred CcHHHHHHHHHHHHCCCEEecCceEEeeCCCHHHH
Confidence 345667777888742 33455777654
No 173
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.37 E-value=37 Score=24.41 Aligned_cols=113 Identities=9% Similarity=0.036 Sum_probs=61.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS----~~av~~f~~~ 120 (302)
.+..+++||+.-.... ...+...|++.|+.+... .+..+..+.+ .-..+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLK-LLEH 72 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHH-HHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHH
Confidence 4567889999986543 456778899999876431 2334444455 335688888753 23444 4455
Q ss_pred HHHcCCCCceEEEEC-hhhHHHHHHHhhccCCCCceeccCCCc-cHHHHHHhccc
Q 022128 121 WKEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (302)
Q Consensus 121 l~~~~~~~~~i~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~ 173 (302)
+.+.+ ++.+++++. ........+.++. |... +..+.. +.+.|...+..
T Consensus 73 l~~~~-~~~~ii~~t~~~~~~~~~~~~~~---g~~~-~l~KP~~~~~~l~~~i~~ 122 (130)
T 3eod_A 73 IRNRG-DQTPVLVISATENMADIAKALRL---GVED-VLLKPVKDLNRLREMVFA 122 (130)
T ss_dssp HHHTT-CCCCEEEEECCCCHHHHHHHHHH---CCSE-EEESCC---CHHHHHHHH
T ss_pred HHhcC-CCCCEEEEEcCCCHHHHHHHHHc---CCCE-EEeCCCCcHHHHHHHHHH
Confidence 65543 456665554 4333333322221 6543 555555 56666665543
No 174
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=64.34 E-value=23 Score=29.36 Aligned_cols=112 Identities=12% Similarity=0.125 Sum_probs=60.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~~ 116 (302)
.++|+|.-...-...+++.|.+.|+ ++.+-. +.+... .+.+.|.+. .+.+.|.||.+.++-...
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHHT--TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHhc--CcchhcEEEEcCCCcHHH
Confidence 4466666654445556666766665 443311 111111 122223221 467899999988764332
Q ss_pred H--HHHHHHcCCCCceEEEE--ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 117 F--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 117 f--~~~l~~~~~~~~~i~aV--G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
. ...+++.+ ++.++++. .+...+.+++. |....+.|....+..|++.+
T Consensus 86 ~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~ 137 (234)
T 2aef_A 86 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 137 (234)
T ss_dssp HHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHHH
Confidence 2 22334433 34566654 55667888888 99876776655555555444
No 175
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=64.17 E-value=3.6 Score=34.92 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=44.3
Q ss_pred CEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCCCC------------------------------cH
Q 022128 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------------------------------DQ 220 (302)
Q Consensus 179 ~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~------------------------------~~ 220 (302)
+|||++-|... .+.+.+.|++.|.+|+.+.+|+....+.. ..
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 57777755432 13467778888999999999985421110 11
Q ss_pred H---HHHHcCCCCEEEEECc-------HHHHHHHHHhh
Q 022128 221 T---VLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (302)
Q Consensus 221 ~---~~~~~~~~d~ivftS~-------s~v~~~~~~~l 248 (302)
+ ..+.+...|.|+|.+| ..++ .|++.+
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK-~~iD~~ 118 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILK-GWMDRV 118 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHH-HHHHHH
Confidence 1 2222457899999886 5678 888775
No 176
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=64.07 E-value=39 Score=30.09 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=88.5
Q ss_pred CCCCCeEEEeCCCCChHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcC
Q 022128 47 SNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~ 125 (302)
++.+|+|+++.+. .+.+.+.| ++...++.. ....+.+++.+ .+.++|.++- .+.-.. +.+..
T Consensus 2 ~~~~mkili~~~~--~~~~~~~L~~~~~p~~~~------~~~~~~~~~~~---~~~~ad~li~-~~~~~~---~~l~~-- 64 (324)
T 3hg7_A 2 SLSQRTLLLLSQD--NAHYERLLKAAHLPHLRI------LRADNQSDAEK---LIGEAHILMA-EPARAK---PLLAK-- 64 (324)
T ss_dssp --CCEEEEEESTT--HHHHHHHHHHSCCTTEEE------EECSSHHHHHH---HGGGCSEEEE-CHHHHG---GGGGG--
T ss_pred CccccEEEEecCC--CHHHHHHHhhccCCCeEE------EeCCChhHHHH---HhCCCEEEEE-CCCCCH---HHHhh--
Confidence 3456899999775 57788899 666544432 22223333444 3467787764 332111 11221
Q ss_pred CCCceEEEE-ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHh-------cc-------------cC------CCCC
Q 022128 126 TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LP-------------KN------GKKK 178 (302)
Q Consensus 126 ~~~~~i~aV-G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~-------------~~------~~~~ 178 (302)
.+++|+++. |.++-....+.+ ..|+.+.-.|. ++++.+++. +. .| ...|
T Consensus 65 ~~~Lk~I~~~~~G~d~id~~~~---~~gI~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g 140 (324)
T 3hg7_A 65 ANKLSWFQSTYAGVDVLLDARC---RRDYQLTNVRG-IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKG 140 (324)
T ss_dssp CTTCCEEEESSSCCGGGSCTTS---CCSSEEECCCS-CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTT
T ss_pred CCCceEEEECCCCCCccChHHH---hCCEEEEECCC-cChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCccccc
Confidence 246666543 444422211111 11676655553 334333221 10 01 1257
Q ss_pred CEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-------cHHHHHHcCCCCEEEEECcHH
Q 022128 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 179 ~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~ivftS~s~ 239 (302)
++|.++.-..-...+...|+..|.+|. .|.+.+.... ...+-+.+...|+|++.-|.+
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt 205 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVL---GVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPAT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCC
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEE---EEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCC
Confidence 899999776667778999999998765 4544332111 111222245789888887644
No 177
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=63.84 E-value=6.6 Score=30.21 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeChH----------HHHHHHHHHHHcCCCCceE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRI 131 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~IifTS~~----------av~~f~~~l~~~~~~~~~i 131 (302)
+.+.+.|++.|+++..+++-+..+ ..+. ++|.|||-+|. .+..|++.+....+.+.++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~-----------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~ 88 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASA-----------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKV 88 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCC-----------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCH-----------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEE
Confidence 334555667787765544332211 1345 88998888753 4556666554444567777
Q ss_pred EEECh
Q 022128 132 GVVGA 136 (302)
Q Consensus 132 ~aVG~ 136 (302)
+++|-
T Consensus 89 ~vfg~ 93 (148)
T 3f6r_A 89 AAFAS 93 (148)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77754
No 178
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=63.69 E-value=43 Score=25.26 Aligned_cols=107 Identities=12% Similarity=0.182 Sum_probs=64.7
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--C--CCCEEEEEC----cHHHHHHHHHhhh
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L--SIPVVAVAS----PSAVRSSWVNLIS 249 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~--~~d~ivftS----~s~v~~~~~~~l~ 249 (302)
.+||++..+. .+..|.+.|+..|++|. ..+. ...+.++.+ . .+|+|++-- ....+ +++.++
T Consensus 37 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~--~~~~------~~~~al~~l~~~~~~~dliilD~~l~~~~g~~--~~~~lr 106 (157)
T 3hzh_A 37 FNVLIVDDSVFTVKQLTQIFTSEGFNII--DTAA------DGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT--CLSNIM 106 (157)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE--EEES------SHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH--HHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEE--EEEC------CHHHHHHHHHhcCCCCCEEEEeccCCCccHHH--HHHHHH
Confidence 5899997765 46788899999987652 1111 112222222 2 678877642 12333 334444
Q ss_pred cccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 250 DTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 250 ~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+.. ...++++++ +.....+.+.|... ++.+..+.+.|++.|...++
T Consensus 107 ~~~-~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 107 EFD-KNARVIMISALGKEQLVKDCLIKGAKT-FIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHC-TTCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTTC
T ss_pred hhC-CCCcEEEEeccCcHHHHHHHHHcCCCE-EEeCCCCHHHHHHHHHHHhc
Confidence 322 245666554 45566677889875 56777899999999987654
No 179
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=63.48 E-value=40 Score=24.46 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (302)
Q Consensus 49 ~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~ 123 (302)
.+++||+.-.... ...+...|++.|+++... .+..+....+.....+|.|++- ..++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 4678999887543 456778899999876532 2233333344343448888774 234555 5556665
Q ss_pred cCCCCceEEEECh-hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 124 AGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 124 ~~~~~~~i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
...++++++++.. ...+...+.++. |.. ++..+..+.+.|...+.+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHL---GVV-DFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhC---Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 4345677766654 333333333221 654 4666778899988887654
No 180
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=63.23 E-value=1e+02 Score=29.06 Aligned_cols=217 Identities=11% Similarity=0.071 Sum_probs=116.5
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEECh
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
...+..++.+.|++.|+++..+.. .....+++. ++.+.+.-+..++.......+.|++ .+.+-+.+--+|.
T Consensus 231 ~~gD~~eik~lL~~~Gi~v~~~~~----g~~t~~ei~----~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~ 302 (492)
T 3u7q_A 231 IGGDAWSSRILLEEMGLRCVAQWS----GDGSISEIE----LTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGP 302 (492)
T ss_dssp BTTTTHHHHHHHHHTTCEEEEEEE----TTCCHHHHH----HGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSH
T ss_pred ChhhHHHHHHHHHHCCCeEEEEeC----CCCCHHHHH----hhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCH
Confidence 345678999999999999986531 112233333 4566777777787666666666654 3443222222553
Q ss_pred -hhHHHHHHHhhccCCCCceeccCCC---ccH---HHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 137 -GTASIFEEVIQSSKCSLDVAFSPSK---ATG---KILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 137 -~Ta~~l~~~~~~~~~G~~~~~~p~~---~~~---e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
.|.+.|++..+ .-|.. .|+. .-. ..+...+.... ..|+|+.+..+..-.-.+...|.+.|++|...
T Consensus 303 ~~T~~~L~~ia~--~~g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~ElGm~vv~~ 377 (492)
T 3u7q_A 303 TKTIESLRAIAA--KFDES---IQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAYEDLGMEVVGT 377 (492)
T ss_dssp HHHHHHHHHHHT--TSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHH--HhCCc---chHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHCCCEEEEE
Confidence 46677776621 00210 1111 000 11222232211 16889998776655567888999999998764
Q ss_pred eeeeeecCCCCcHHHHHHcCCCCEEEEEC--cHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEec----C
Q 022128 208 NTYTTEPVHHVDQTVLKQALSIPVVAVAS--PSAVRSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP----T 281 (302)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~~~~d~ivftS--~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~----~ 281 (302)
-.+... ....+.+.+ ....+.+++.. ...++ .+++.. +..++.-|......++++|+.-+.+. .
T Consensus 378 gt~~~~--~~d~~~l~~-~~~~~~~i~~~~d~~el~-~~i~~~------~pDL~ig~~~~~~ia~k~gIP~~~~~~~d~~ 447 (492)
T 3u7q_A 378 GYEFAH--NDDYDRTMK-EMGDSTLLYDDVTGYEFE-EFVKRI------KPDLIGSGIKEKFIFQKMGIPFREMHSWDYS 447 (492)
T ss_dssp EESSCC--HHHHHHHHT-TSCTTCEEEESCBHHHHH-HHHHHH------CCSEEEECHHHHHHHHHTTCCEEESSSGGGC
T ss_pred eCCCCC--HHHHHHHHH-hCCCCcEEEcCCCHHHHH-HHHHhc------CCcEEEeCcchhHHHHHcCCCEEeccccccC
Confidence 443221 111111111 12345566654 44444 333322 23455567777778888998754321 1
Q ss_pred C--CChHHHHHHHHHHHH
Q 022128 282 H--PGLEGWVDSILEALR 297 (302)
Q Consensus 282 ~--~~~~~ll~~i~~~~~ 297 (302)
. ...++.+..+.+..+
T Consensus 448 ~p~~GY~Ga~~l~~~i~n 465 (492)
T 3u7q_A 448 GPYHGFDGFAIFARDMDM 465 (492)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCcEehhhHHHHHHHHHH
Confidence 2 235676666665543
No 181
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=62.70 E-value=15 Score=29.52 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=41.2
Q ss_pred CEEEEeCCCc----chhhHHHHHHh---CCCeeEEEeeeeeecC----------CCCcHHHHHHcCCCCEEEEECc----
Q 022128 179 CTVLYPASAK----ASNEIEEGLSN---RGFEVVRLNTYTTEPV----------HHVDQTVLKQALSIPVVAVASP---- 237 (302)
Q Consensus 179 ~~vL~~rg~~----~~~~L~~~L~~---~G~~v~~~~vY~~~~~----------~~~~~~~~~~~~~~d~ivftS~---- 237 (302)
.+||++.|.. ....+.+.+.+ .|.+|+.+.+++ .+. +....+..+.+...|.|+|.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 3677776543 23445555433 367777777765 111 0011223334567899999995
Q ss_pred ---HHHHHHHHHhhhc
Q 022128 238 ---SAVRSSWVNLISD 250 (302)
Q Consensus 238 ---s~v~~~~~~~l~~ 250 (302)
..++ .|++.+..
T Consensus 86 ~~p~~lK-~~iD~~~~ 100 (193)
T 1rtt_A 86 SMAGVLK-NAIDWASR 100 (193)
T ss_dssp EECHHHH-HHHHHHTC
T ss_pred CcCHHHH-HHHHHhcc
Confidence 6788 88888764
No 182
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=62.68 E-value=4.1 Score=32.57 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=50.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeC---CCch--HHHHHHhcCCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEC
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQG---PDTD--RLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~---~~~~--~l~~~l~~l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG 135 (302)
...+.+.|+..|+++...|+.+.... .+.+ -....+...+.+|.+|+.|.-+ .....+.+++. -++++..+|
T Consensus 63 ~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~~--~G~~V~v~g 140 (165)
T 2qip_A 63 QRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQR--YNKKVTVYG 140 (165)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHHH--HCCEEEEEE
T ss_pred HHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHHH--cCcEEEEEe
Confidence 46688999999999999998754221 1222 1123332236788888888766 22233344442 046777777
Q ss_pred h--hhHHHHHHHh
Q 022128 136 A--GTASIFEEVI 146 (302)
Q Consensus 136 ~--~Ta~~l~~~~ 146 (302)
. .|...|++.+
T Consensus 141 ~~~~~s~~L~~~a 153 (165)
T 2qip_A 141 VPRLTSQTLIDCA 153 (165)
T ss_dssp CGGGSCHHHHHHS
T ss_pred CCCcChHHHHHhC
Confidence 4 3678887773
No 183
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=62.68 E-value=18 Score=31.61 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=38.2
Q ss_pred cccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEec--------------eEEeeeC--CCchHHHHHHh
Q 022128 36 QASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELP--------------LIQHAQG--PDTDRLSSVLN 98 (302)
Q Consensus 36 ~~~~~~~~~~~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P--------------~~~~~~~--~~~~~l~~~l~ 98 (302)
|..+|+.+-...+.||+||||-..+. ...+++.|.+.|++|+.+- -+++... .|.+.+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~ 86 (333)
T 2q1w_A 7 HHHHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIG 86 (333)
T ss_dssp --------------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHH
T ss_pred cccccCceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHh
Confidence 44556666777788999999987653 5668888888999887652 1222222 23344555553
Q ss_pred cCCCccEEEEeC
Q 022128 99 ADTIFDWIIITS 110 (302)
Q Consensus 99 ~l~~~d~IifTS 110 (302)
. .+.|.||...
T Consensus 87 ~-~~~D~vih~A 97 (333)
T 2q1w_A 87 D-LQPDAVVHTA 97 (333)
T ss_dssp H-HCCSEEEECC
T ss_pred c-cCCcEEEECc
Confidence 2 2478888754
No 184
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=62.35 E-value=66 Score=27.41 Aligned_cols=15 Identities=7% Similarity=-0.002 Sum_probs=8.8
Q ss_pred CCCCEEEEECcHHHH
Q 022128 227 LSIPVVAVASPSAVR 241 (302)
Q Consensus 227 ~~~d~ivftS~s~v~ 241 (302)
.++|.|++.+..+..
T Consensus 68 ~~vDgII~~~~~~~~ 82 (302)
T 2qh8_A 68 ENPDVLVGIATPTAQ 82 (302)
T ss_dssp TCCSEEEEESHHHHH
T ss_pred CCCCEEEECChHHHH
Confidence 467777666654444
No 185
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=61.63 E-value=2.9 Score=34.61 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=35.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
+..+.+.+++.|.++..+-+++..+..+ +.+.+..+.+..+|.|||.||.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~-~dv~~~~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGK-IDVAAEQKLIETHDSLVWQFPI 68 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCC-CCHHHHHHHHHTSSSEEEEEEC
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCc-hhHHHHHHHHHhCCEEEEEcCh
Confidence 4556777788899999888887654321 2344445556789999999974
No 186
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=61.53 E-value=43 Score=27.43 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=63.5
Q ss_pred CCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-----HHHHHHH
Q 022128 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSSWV 245 (302)
Q Consensus 178 ~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-----~v~~~~~ 245 (302)
+.+|++.+.++ +...+...|+..|++|..+-. ..+.+++.+.. .++|+|.+++.. .++ .+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~------~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~-~~i 160 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV------DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMK-STI 160 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS------SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHH-HHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHcCCCEEEEeccccccHHHHH-HHH
Confidence 45787776553 456778889999998866553 22233333332 488999888743 244 455
Q ss_pred HhhhcccC-CCceEEEECHHHHHH-HHHcCCCeEEecCCCChHHHHHHHHHH
Q 022128 246 NLISDTEQ-WSNSVACIGETTASA-AKRLGLKNVYYPTHPGLEGWVDSILEA 295 (302)
Q Consensus 246 ~~l~~~~~-~~~~i~~IG~~Ta~~-l~~~G~~~~~v~~~~~~~~ll~~i~~~ 295 (302)
+.+++... .++++++-|+.+... +++.|... ++ .+..+.++.+++.
T Consensus 161 ~~l~~~~~~~~~~v~vGG~~~~~~~~~~~gad~--~~--~da~~av~~~~~l 208 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGAPLSQDFADEIGADG--YA--PDAASATELCRQL 208 (210)
T ss_dssp HHHHHTTCGGGCEEEEESTTCCHHHHHHHTCSE--EC--SSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEECCCCCHHHHHHcCCeE--EE--CCHHHHHHHHHHH
Confidence 55554322 247888888765444 45567653 23 3555556555544
No 187
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=61.47 E-value=29 Score=28.42 Aligned_cols=54 Identities=13% Similarity=0.117 Sum_probs=33.4
Q ss_pred cCCCCEEEEECcHHHHHHH-HHhhhcccCCCceEE--EECHHHHHHHHHcCCCeEEec
Q 022128 226 ALSIPVVAVASPSAVRSSW-VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 280 (302)
Q Consensus 226 ~~~~d~ivftS~s~v~~~~-~~~l~~~~~~~~~i~--~IG~~Ta~~l~~~G~~~~~v~ 280 (302)
+.+.|+++.+.+.... +. ....-+......+++ +-++...+.++++|...++.|
T Consensus 63 i~~ad~vi~~~~~d~~-n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p 119 (218)
T 3l4b_C 63 VSKNDVVVILTPRDEV-NLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNL 119 (218)
T ss_dssp CCTTCEEEECCSCHHH-HHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCH
T ss_pred cccCCEEEEecCCcHH-HHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECH
Confidence 4688988887776655 43 222222111233444 458888999999999875544
No 188
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=60.79 E-value=13 Score=30.49 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=42.7
Q ss_pred CEEEEeCCCcch----hhH----HH----HHHhC--CCeeEEEeeeeeecC-------CCCc---HHHHHHcCCCCEEEE
Q 022128 179 CTVLYPASAKAS----NEI----EE----GLSNR--GFEVVRLNTYTTEPV-------HHVD---QTVLKQALSIPVVAV 234 (302)
Q Consensus 179 ~~vL~~rg~~~~----~~L----~~----~L~~~--G~~v~~~~vY~~~~~-------~~~~---~~~~~~~~~~d~ivf 234 (302)
+||+++.|.... ..| .+ .|++. |++++.+.+++.... .... .++.+.+...|.|+|
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 577777665432 223 33 34444 788888877665421 0111 233444568899999
Q ss_pred ECc-------HHHHHHHHHhhhc
Q 022128 235 ASP-------SAVRSSWVNLISD 250 (302)
Q Consensus 235 tS~-------s~v~~~~~~~l~~ 250 (302)
.|| ..++ +|++.+..
T Consensus 92 ~sP~Y~~~~~~~lK-~~iD~~~~ 113 (191)
T 3k1y_A 92 ATPVFKASYTGLFK-MFFDILDT 113 (191)
T ss_dssp EEECBTTBSCHHHH-HHHHHSCT
T ss_pred EcCccCCcCcHHHH-HHHHHhhh
Confidence 987 4678 88888764
No 189
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=60.76 E-value=1.2e+02 Score=28.97 Aligned_cols=142 Identities=11% Similarity=0.076 Sum_probs=82.9
Q ss_pred CCChHHHHHHHHhCCCcEEEeceEEeeeC-CCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH-cCCCCceEEEEC-
Q 022128 59 RGKNGKLIKALAKHRIDCLELPLIQHAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG- 135 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~-~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~-~~~~~~~i~aVG- 135 (302)
.++..++.+.|++.|+++..+ .+. ...+ .+.++.+.+.-+..++.......+.|++ .+.+-+.+.-+|
T Consensus 218 ~gD~~eikrlL~~~Gi~v~~~-----~~gg~t~~----ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~ 288 (533)
T 1mio_A 218 GGDAWEMDRVLEKIGYHVNAT-----LTGDATYE----KVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGV 288 (533)
T ss_dssp TSHHHHHHHHHHHHTCEEEEE-----EETTCCHH----HHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSH
T ss_pred hhhHHHHHHHHHHCCCeEEEE-----eCCCCCHH----HHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCH
Confidence 345689999999999998862 121 2223 2347788888888888777777777755 354433333466
Q ss_pred hhhHHHHHHHhhccCCCCce--eccCCCccH--HHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 136 AGTASIFEEVIQSSKCSLDV--AFSPSKATG--KILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 136 ~~Ta~~l~~~~~~~~~G~~~--~~~p~~~~~--e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
..|.+.|++..+. -|... .-++..... ..+...|.+.. ..|+++.+..+..-.-.+...|.+.|++|..+-+
T Consensus 289 ~~T~~~Lr~ia~~--~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t 366 (533)
T 1mio_A 289 DGIVETLRDMAKC--FDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGF 366 (533)
T ss_dssp HHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHHHHHH--hCCCcccccchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEe
Confidence 4577777765210 03200 001110000 01222222111 1678988877766666788899999999877654
Q ss_pred ee
Q 022128 210 YT 211 (302)
Q Consensus 210 Y~ 211 (302)
+.
T Consensus 367 ~~ 368 (533)
T 1mio_A 367 EF 368 (533)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 190
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=60.53 E-value=11 Score=29.99 Aligned_cols=58 Identities=14% Similarity=0.300 Sum_probs=31.9
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeec---------------CCCCcHHHHHHcCCCCEEEEECc-------HHHHHHHHHh
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEP---------------VHHVDQTVLKQALSIPVVAVASP-------SAVRSSWVNL 247 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~---------------~~~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~ 247 (302)
...+.+.+.+ |++++.+.+|+... ......+..+.+...|.|+|.|| ..++ .|++.
T Consensus 19 t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y~~~~p~~lK-~~iD~ 96 (184)
T 1rli_A 19 TDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIYWFGMSGTLK-LFIDR 96 (184)
T ss_dssp HHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHT
T ss_pred HHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCccccCCcHHHH-HHHHH
Confidence 3455555543 45666566555422 11222334445678999999995 6788 88887
Q ss_pred hh
Q 022128 248 IS 249 (302)
Q Consensus 248 l~ 249 (302)
+.
T Consensus 97 ~~ 98 (184)
T 1rli_A 97 WS 98 (184)
T ss_dssp HH
T ss_pred hH
Confidence 63
No 191
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=60.45 E-value=47 Score=33.12 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=68.9
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~ 118 (302)
..++|++....++ ..-....|+..|++|+..+.... .+++.+.. .-.+.|.|.++|-. .+....
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA-~e~~adiVglSsl~~~~~~~~~~vi 668 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQT-----PEETARQA-VEADVHVVGVSSLAGGHLTLVPALR 668 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBC-----HHHHHHHH-HHTTCSEEEEEECSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCC-----HHHHHHHH-HHcCCCEEEEeeecHhHHHHHHHHH
Confidence 4567888775533 23455588999999998765432 13333333 22568888888733 456667
Q ss_pred HHHHHcCCCCceEEEEC-hhh--HHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 119 EAWKEAGTPNVRIGVVG-AGT--ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG-~~T--a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
+.|++.+.+++++++=| .-+ .+.+++. |+...+.|. .+...++..+
T Consensus 669 ~~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~g-t~~~e~a~~l 717 (727)
T 1req_A 669 KELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTPG-TVIPESAISL 717 (727)
T ss_dssp HHHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECTT-CCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcCC-ccHHHHHHHH
Confidence 77888888777777766 223 4667887 998766554 3454444444
No 192
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=59.66 E-value=18 Score=28.39 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-----HHHHHHHHHHcCCCCceEEEECh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a-----v~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
.+++.|++.|+++..+.+-+. .+...+ +..+.++|.|||-||.= ...|+..+....+.+.++++.|.
T Consensus 24 ~ia~~l~~~g~~v~~~~~~~~---~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDLGAA---VDLQEL---RELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHHTTCEEEEEESSSC---CCHHHH---HHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHCCCeEEEEECcCc---CCHHHH---HHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEc
Confidence 355566777887654333221 022322 33456799999999841 13555556555567788888874
No 193
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=59.63 E-value=11 Score=33.36 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=79.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IifTS~~a--v--~~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|-- + +..++++.. ...+++. +.
T Consensus 59 ~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~~-----~~ 130 (300)
T 4a26_A 59 HKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALL-----PV 130 (300)
T ss_dssp HHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGGGCTTCCS-----HH
T ss_pred HHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcccccccCC-----cc
Confidence 45667889988766543221 223444444 3456799999988722 1 222222211 1112221 21
Q ss_pred hHHHHHHHhhccCCCC-ceeccCCCccHHHHHHhcccCCC--CCCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 138 TASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNGK--KKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~-~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
-.-.| .. |- ...+.| -|+.+..+.|..... .|++++++. |+....-+...|...|+.|+.+.-+..
T Consensus 131 N~G~l--~~-----g~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~- 200 (300)
T 4a26_A 131 NVGLL--HY-----KGREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS- 200 (300)
T ss_dssp HHHHH--HC-----TTCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-
T ss_pred eEEEe--ec-----CCCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-
Confidence 11111 11 21 222343 467777777765432 789999986 454566788899999998865543211
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
... +.+.+.+.|+|+-+-+.
T Consensus 201 ----~l~-l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 201 ----TED-MIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp ----HHH-HHHHHHTCSEEEECSCC
T ss_pred ----Cch-hhhhhccCCEEEECCCC
Confidence 111 00234577888776653
No 194
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=59.62 E-value=38 Score=29.98 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=77.2
Q ss_pred CCccEEEEeChH-HHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~IifTS~~-av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~ 178 (302)
.+.|.||..... ......+.+.+. +++++.++..+. .... ..-..+.+. ...+..+++.|.+.. .
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVERA---DALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHHT---TCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHhc---CceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 578999886443 344455555553 577877765310 0000 111112232 234556667776554 4
Q ss_pred CEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC-cHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS-~s~v~~~~~~~l~~ 250 (302)
++|.++.++.. ...+.+.|++.|..+.....|............+..+ .++|+|++.+ ...+. .+++.+.+
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~-~~~~~~~~ 219 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTA-ELYRAIAR 219 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHH-HHHHHHHH
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHH-HHHHHHHH
Confidence 78888876432 2456788899998876433332100111111222222 3789998887 45666 67677665
Q ss_pred ccCC--CceEEEE
Q 022128 251 TEQW--SNSVACI 261 (302)
Q Consensus 251 ~~~~--~~~i~~I 261 (302)
.... ..+++..
T Consensus 220 ~G~~~~~~~~~~~ 232 (385)
T 1pea_A 220 RYGDGRRPPIASL 232 (385)
T ss_dssp HHCSSCCCCEEES
T ss_pred cCCCcCCceEEec
Confidence 4322 2445543
No 195
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=59.24 E-value=79 Score=26.48 Aligned_cols=74 Identities=14% Similarity=-0.001 Sum_probs=44.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----fTS~~av~~f~~~ 120 (302)
..+.|++||||-.... ...+++.|.+.|++|+.+- ......+.+.+.+......+..+ +++..+++.+++.
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~----r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG----RSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGR 81 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe----CCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHH
Confidence 3578999999986543 5678899999999876541 10011122333333332122333 3688889888876
Q ss_pred HHH
Q 022128 121 WKE 123 (302)
Q Consensus 121 l~~ 123 (302)
+.+
T Consensus 82 ~~~ 84 (262)
T 3pk0_A 82 AVE 84 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 196
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=59.23 E-value=94 Score=27.38 Aligned_cols=146 Identities=7% Similarity=-0.084 Sum_probs=80.7
Q ss_pred CCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCC
Q 022128 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (302)
Q Consensus 100 l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~ 178 (302)
-.+.+.||-.+..........+.+. +++++..+... . +... .......|. ...+..+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~~-~-~~~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYSA-K-LLVK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCCG-G-GTTS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccch-h-hcCC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 3578899886666666666666654 56676654332 2 1111 221122333 233455666655421 23
Q ss_pred CEEEEeCC-Cc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH--c--CCCCEEEEECc-HHHHHHHHHh
Q 022128 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSSWVNL 247 (302)
Q Consensus 179 ~~vL~~rg-~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~--~--~~~d~ivftS~-s~v~~~~~~~ 247 (302)
++|.++.+ +. ..+.+.+.|++.|+.+.....|... ..+....+.. + .++|+|++.+. ..+. .+++.
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~-~~~~~ 218 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCS-LLGRA 218 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHH-HHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHH-HHHHH
Confidence 68888876 32 2456778888999887655555431 1111222333 3 57899888776 5666 67776
Q ss_pred hhcccCCCceEEEE
Q 022128 248 ISDTEQWSNSVACI 261 (302)
Q Consensus 248 l~~~~~~~~~i~~I 261 (302)
+.+.. .+.+++..
T Consensus 219 ~~~~g-~~~~~~~~ 231 (391)
T 3eaf_A 219 MAKVG-LDAFLLTN 231 (391)
T ss_dssp HHHHT-CCCEEEEC
T ss_pred HHHCC-CCceEEEe
Confidence 66543 24566544
No 197
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=59.10 E-value=34 Score=28.86 Aligned_cols=74 Identities=12% Similarity=-0.046 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeChHHHHHHH
Q 022128 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFL 118 (302)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii----fTS~~av~~f~ 118 (302)
..|.||++|||-.. +=....++.|.+.|++|+..-. - ....+++.+.++.....+... +|+..+++.++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r--~--~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 77 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYR--K--ERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGF 77 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEES--S--GGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEEC--C--HHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHH
Confidence 36889999999843 4467899999999999875421 1 112345556665554434443 37899998888
Q ss_pred HHHHH
Q 022128 119 EAWKE 123 (302)
Q Consensus 119 ~~l~~ 123 (302)
+...+
T Consensus 78 ~~~~~ 82 (256)
T 4fs3_A 78 EQIGK 82 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 198
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=59.10 E-value=49 Score=24.08 Aligned_cols=109 Identities=10% Similarity=0.078 Sum_probs=65.7
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC------cHHHHHHHHHhh
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS------PSAVRSSWVNLI 248 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS------~s~v~~~~~~~l 248 (302)
..+||++..+. .+..|.+.|+..|++|.... ...+.++.+ ..+|+|++-- .+..+ +++.+
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---------~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~--~~~~l 74 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA---------SAESFMRQQISDDAIGMIIEAHLEDKKDSGIE--LLETL 74 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES---------SHHHHTTSCCCTTEEEEEEETTGGGBTTHHHH--HHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC---------CHHHHHHHHhccCCCEEEEeCcCCCCCccHHH--HHHHH
Confidence 35899887765 46778888998887653211 112222222 3577777642 23333 44444
Q ss_pred hcccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 249 SDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 249 ~~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
++.. ...++++++ +.....+.+.|... ++.+..+.+.|.+.|...+...
T Consensus 75 ~~~~-~~~~ii~~s~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 75 VKRG-FHLPTIVMASSSDIPTAVRAMRASAAD-FIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp HHTT-CCCCEEEEESSCCHHHHHHHHHTTCSE-EEESSBCHHHHHHHHHHHHHHH
T ss_pred HhCC-CCCCEEEEEcCCCHHHHHHHHHcChHH-heeCCCCHHHHHHHHHHHHhcc
Confidence 4432 345666654 33345566789875 5677789999999999887643
No 199
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=59.10 E-value=48 Score=28.63 Aligned_cols=145 Identities=12% Similarity=0.072 Sum_probs=77.9
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHHHhcccCCCCC
Q 022128 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (302)
Q Consensus 101 ~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~~~L~~~~~~~ 178 (302)
++.|.||-. +..........+.+. +++++..+.. . +.... . ..-..+.|.. ..+..+++.|.+. ..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 135 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPER---A-KWSVVMPQPIPIMGKVLYEHMKKN--NV 135 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTTT---T-TTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccCC---C-CcEEecCCChHHHHHHHHHHHHhc--CC
Confidence 468999864 344444555555554 4566666543 1 11110 0 1111122322 2345566666554 24
Q ss_pred CEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC-cHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS-~s~v~~~~~~~l~~ 250 (302)
++|.++..+.. ...+.+.|++.|+.+.....|.... ......+..+ .++|+|++.+ ...+- .+++.+.+
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~l~~~~~dav~~~~~~~~a~-~~~~~~~~ 212 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPD--TSVAGQALKLVAANPDAILVGASGTAAA-LPQTTLRE 212 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC--SCCHHHHHHHHHHCCSEEEEECCHHHHH-HHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCC--CCHHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHH
Confidence 68887754332 3467788999999876555554321 2222222222 4789998887 66666 67777766
Q ss_pred ccCCCceEEEE
Q 022128 251 TEQWSNSVACI 261 (302)
Q Consensus 251 ~~~~~~~i~~I 261 (302)
... ..+++.+
T Consensus 213 ~g~-~~p~i~~ 222 (362)
T 3snr_A 213 RGY-NGLIYQT 222 (362)
T ss_dssp TTC-CSEEEEC
T ss_pred cCC-CccEEec
Confidence 432 4455543
No 200
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=58.99 E-value=54 Score=24.55 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=65.3
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHH
Q 022128 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (302)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS----~~av~~f~~~l~ 122 (302)
..+++|||.-... ....+...|++.|+++..+ .+..+..+.+ .-..+|.|++-- .++.+ +++.+.
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr 74 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFL-SLTRPDLIISDVLMPEMDGYA-LCRWLK 74 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHH-TTCCCSEEEEESCCSSSCHHH-HHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHH
Confidence 3467899987654 3456788888888765422 2334444455 335689888853 34555 455566
Q ss_pred HcC-CCCceEEEEC-hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 123 EAG-TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 123 ~~~-~~~~~i~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
+.. .++++++++. ....+...+.++. |.. ++.++..+.+.|...+..
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 123 (154)
T 3gt7_A 75 GQPDLRTIPVILLTILSDPRDVVRSLEC---GAD-DFITKPCKDVVLASHVKR 123 (154)
T ss_dssp HSTTTTTSCEEEEECCCSHHHHHHHHHH---CCS-EEEESSCCHHHHHHHHHH
T ss_pred hCCCcCCCCEEEEECCCChHHHHHHHHC---CCC-EEEeCCCCHHHHHHHHHH
Confidence 543 3567776554 3443433333222 664 466677788888776653
No 201
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=58.93 E-value=84 Score=28.47 Aligned_cols=34 Identities=12% Similarity=0.040 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
++++|+++.|......+...+++.|++|..+. +.
T Consensus 23 ~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~ 56 (403)
T 3k5i_A 23 NSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-AD 56 (403)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-ST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CC
Confidence 46899999887777788999999999987776 53
No 202
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=58.91 E-value=11 Score=31.77 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=42.8
Q ss_pred CEEEEeCCCcc--------h----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc-------HH
Q 022128 179 CTVLYPASAKA--------S----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SA 239 (302)
Q Consensus 179 ~~vL~~rg~~~--------~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~-------s~ 239 (302)
.+||++-|-.. + +.+.+.|++.|.+|+.+.+++ ..+..+..+.+...|.|+|.+| ..
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~----~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~ 101 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ----GYDIESEIENYLWADTIIYQMPAWWMGEPWI 101 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG----CCCHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC----ccCHHHHHHHHHhCCEEEEECChHhccCCHH
Confidence 46777765431 1 245666777899999888876 2233334444567899999876 56
Q ss_pred HHHHHHHhh
Q 022128 240 VRSSWVNLI 248 (302)
Q Consensus 240 v~~~~~~~l 248 (302)
++ .|++.+
T Consensus 102 lK-~~iD~v 109 (218)
T 3rpe_A 102 LK-KYIDEV 109 (218)
T ss_dssp HH-HHHHHH
T ss_pred HH-HHHHHH
Confidence 77 777665
No 203
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=58.86 E-value=82 Score=27.83 Aligned_cols=176 Identities=11% Similarity=-0.007 Sum_probs=87.9
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChh-----------------hHHHHHHHhhccCCCCc----eeccC
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-----------------TASIFEEVIQSSKCSLD----VAFSP 159 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~-----------------Ta~~l~~~~~~~~~G~~----~~~~p 159 (302)
...|.|++.|....+.....+. ....++.+|... ....+++.+ |+. ..++.
T Consensus 187 ~~ad~ii~~S~~~~~~~~~~~~---~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~G 258 (439)
T 3fro_A 187 YIADIVTTVSRGYLIDEWGFFR---NFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKF-----GMDEGVTFMFIG 258 (439)
T ss_dssp HHCSEEEESCHHHHHHTHHHHG---GGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHH-----TCCSCEEEEEEC
T ss_pred hhccEEEecCHHHHHHHhhhhh---hcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHc-----CCCCCcEEEEEc
Confidence 3579999999988877433221 122334444321 234444443 432 22222
Q ss_pred C----CccHHHHHHhcccCCC----CCCEEEEeCCCcch--hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCC
Q 022128 160 S----KATGKILASELPKNGK----KKCTVLYPASAKAS--NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSI 229 (302)
Q Consensus 160 ~----~~~~e~L~~~L~~~~~----~~~~vL~~rg~~~~--~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~ 229 (302)
. .-.-+.|++++..... ++-++++....... +.+.+..++.| ++..+.= ....+++...+...
T Consensus 259 ~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g------~~~~~~~~~~~~~a 331 (439)
T 3fro_A 259 RFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITE------MLSREFVRELYGSV 331 (439)
T ss_dssp CSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECS------CCCHHHHHHHHTTC
T ss_pred ccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcC------CCCHHHHHHHHHHC
Confidence 1 1235566666654432 23455555443333 55666666666 3322111 01223344445788
Q ss_pred CEEEEECcHHH-HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 230 PVVAVASPSAV-RSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 230 d~ivftS~s~v-~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
|+++++|...- -..+++.+. .++++++-.-.....+-+.| ....+ +..+.+++.++|.+.+.
T Consensus 332 dv~v~ps~~e~~~~~~~EAma----~G~Pvi~s~~~~~~e~~~~~-~g~~~-~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 332 DFVIIPSYFEPFGLVALEAMC----LGAIPIASAVGGLRDIITNE-TGILV-KAGDPGELANAILKALE 394 (439)
T ss_dssp SEEEECBSCCSSCHHHHHHHH----TTCEEEEESSTHHHHHCCTT-TCEEE-CTTCHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCccHHHHHHHH----CCCCeEEcCCCCcceeEEcC-ceEEe-CCCCHHHHHHHHHHHHh
Confidence 99999985310 001222222 25677765332222222234 43333 44589999999998887
No 204
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=58.76 E-value=27 Score=31.02 Aligned_cols=148 Identities=8% Similarity=0.018 Sum_probs=81.0
Q ss_pred CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCC-CccHHHHHHhcccCCCCCC
Q 022128 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKC 179 (302)
Q Consensus 101 ~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~-~~~~e~L~~~L~~~~~~~~ 179 (302)
++.+.||-.+..........+.+. +++++..+. +....... . ...-..+.|. ...+..+++.|.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~---~-~~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP---N-NDYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS---S-CTTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC---C-CCceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 478888886666666666666664 456665433 22211111 0 0111112333 223445666665532 247
Q ss_pred EEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE-ECcHHHHHHHHHhhhcc
Q 022128 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSSWVNLISDT 251 (302)
Q Consensus 180 ~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf-tS~s~v~~~~~~~l~~~ 251 (302)
+|.++..+.. ...+.+.|++.|..+.....|... ..+....+..+ .++|+|++ .+...+. .+++.+.+.
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~-~~~~~~~~~ 221 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVA-NILKDAKRL 221 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHH-HHHHHHHHT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHH-HHHHHHHHc
Confidence 8888765432 346788899999987655555432 12222223322 57898885 6667777 777777664
Q ss_pred cCCCceEEEE
Q 022128 252 EQWSNSVACI 261 (302)
Q Consensus 252 ~~~~~~i~~I 261 (302)
. .+.+++..
T Consensus 222 g-~~~~~~~~ 230 (392)
T 3lkb_A 222 G-LKMRHLGA 230 (392)
T ss_dssp T-CCCEEEEC
T ss_pred C-CCceEEEe
Confidence 3 34566654
No 205
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=58.30 E-value=44 Score=30.74 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=61.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE------------EeeeCC--CchHHHHHHhcCCCccEEEEeChHHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGS 115 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~--~~~~l~~~l~~l~~~d~IifTS~~av~ 115 (302)
+++|+|.--..-...+++.|.+.|++++.+-.= .+.... +.+.|.+ . .+.+.|.||.+.++...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~-a-gi~~A~~viv~~~~~~~ 81 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLES-A-GAAKAEVLINAIDDPQT 81 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHH-T-TTTTCSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHh-c-CCCccCEEEECCCChHH
Confidence 567888876555677888888888887765421 111111 2222322 2 46789999998876544
Q ss_pred HH--HHHHHHcCCCCceEEEE--ChhhHHHHHHHhhccCCCCceeccC
Q 022128 116 VF--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSP 159 (302)
Q Consensus 116 ~f--~~~l~~~~~~~~~i~aV--G~~Ta~~l~~~~~~~~~G~~~~~~p 159 (302)
.. ...+++.+ +++++++. ...-...|++. |....+.|
T Consensus 82 n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~ 122 (413)
T 3l9w_A 82 NLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERE 122 (413)
T ss_dssp HHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEET
T ss_pred HHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECc
Confidence 33 33334443 45666644 56677788887 88765544
No 206
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=58.14 E-value=25 Score=34.63 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=69.1
Q ss_pred CCeEEEeCCCCChHHHH---------HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh--------H
Q 022128 50 NPKVVVTRERGKNGKLI---------KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------E 112 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~---------~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~--------~ 112 (302)
..+|++.-..++.-.+- ..|+..|++|+.+..-.. .+.+.+.... .+.|.|.+++- .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVP-----pEeIVeAA~E-edADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVP-----VEKLVDAAIE-LKADAILASTIISHDDIHYK 675 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBC-----HHHHHHHHHH-TTCSEEEEECCCCGGGHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHH-cCCCEEEEeccccCchhhHH
Confidence 45677776554433333 368999999998876522 1334444322 56789888753 3
Q ss_pred HHHHHHHHHHHcCCC-CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 113 AGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 113 av~~f~~~l~~~~~~-~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
.+..+.+.+++.+.. ++++++=|....+.+.+.+ |....+ ++...+..+++.|..
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI-----GADa~f-~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ-----GVDAGF-GRGSKGIHVATFLVK 731 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT-----TCSEEE-CTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc-----CCcEEE-CCcchHHHHHHHHHH
Confidence 446667788888875 4888888865554444443 887644 444556666666543
No 207
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=57.98 E-value=53 Score=24.12 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=66.9
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~ 250 (302)
..+||++..+. .+..+...|...|++|. .+. ...+..+.+ ..+|+|++-- ....+ +++.+.+
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~--~~~~l~~ 76 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDII---QCG------NAIEAVPVAVKTHPHLIITEANMPKISGMD--LFNSLKK 76 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEE---EES------SHHHHHHHHHHHCCSEEEEESCCSSSCHHH--HHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEE---EeC------CHHHHHHHHHcCCCCEEEEcCCCCCCCHHH--HHHHHHc
Confidence 46889887765 46788889998886543 111 112222222 3688888752 23333 4455544
Q ss_pred c-cCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 T-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~-~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
. ....+++++++ ......+.+.|... ++.+..+.+.|.+.|...++..
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQLLDMGFID-FIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHHHHHTCSE-EEESSCCHHHHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHhCCCCE-EEeCCCCHHHHHHHHHHHHHHH
Confidence 2 12346666663 34445556789875 5677779999999998887643
No 208
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=57.63 E-value=34 Score=23.71 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=60.3
Q ss_pred CEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc---HHHHHHHHHhhhccc
Q 022128 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSSWVNLISDTE 252 (302)
Q Consensus 179 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~---s~v~~~~~~~l~~~~ 252 (302)
.+||++..+.. +..+.+.|+..|++|.. +. ...+..+.+ ..+|+|++--. .... .+++.+.+..
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~---~~------~~~~~~~~l~~~~~dlii~d~~~~~~~~~-~~~~~l~~~~ 71 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIW---LV------DGSTALDQLDLLQPIVILMAWPPPDQSCL-LLLQHLREHQ 71 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEE---ES------CHHHHHHHHHHHCCSEEEEECSTTCCTHH-HHHHHHHHTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEE---ec------CHHHHHHHHHhcCCCEEEEecCCCCCCHH-HHHHHHHhcc
Confidence 57888876654 57888889988875532 11 112222222 36888876532 1222 3444454432
Q ss_pred -CCCceEEEECHHHH-HHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 253 -QWSNSVACIGETTA-SAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 253 -~~~~~i~~IG~~Ta-~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
....++++++.... ..+.+.|... ++.+..+.+.+.+.+...++
T Consensus 72 ~~~~~~ii~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 72 ADPHPPLVLFLGEPPVDPLLTAQASA-ILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCSSCCCEEEESSCCSSHHHHHHCSE-ECSSCSTTHHHHHHHHTTCC
T ss_pred ccCCCCEEEEeCCCCchhhhhcCHHH-hccCCCCHHHHHHHHHHHhc
Confidence 12455555533211 1555678875 56666788888888876543
No 209
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.30 E-value=46 Score=28.01 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=50.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.-+.+.|+++|..+.....+......+ ...+.+.|..-.+.|+|+.++-. +..+.+++.+.++.++.++..+...
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~ 235 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLE 235 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 446778888887765444433222111 23456666555678999999888 6667888888888778888887655
No 210
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=57.17 E-value=26 Score=27.46 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---HH--HHHHHHHHHcCCCCceEEEECh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---AG--SVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---av--~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
+.+++.|++.|+++..+.+-+ .+...+ +..+.++|.|||-||. .+ ..|++.+....+.+.+++++|.
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQEL---IEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHHH---HHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHHH---HHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEc
Confidence 345556677788765443221 122222 2234578999999873 11 3566666554567788888873
No 211
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=57.16 E-value=20 Score=28.80 Aligned_cols=84 Identities=7% Similarity=-0.032 Sum_probs=48.2
Q ss_pred CeEEEeCCC----CChHHHHHHHHhC---CCcEEEeceEEeeeCCC--------chHHHHHHhcCCCccEEEEeCh----
Q 022128 51 PKVVVTRER----GKNGKLIKALAKH---RIDCLELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSP---- 111 (302)
Q Consensus 51 ~~IlitR~~----~~~~~l~~~L~~~---G~~v~~~P~~~~~~~~~--------~~~l~~~l~~l~~~d~IifTS~---- 111 (302)
|+||+.-.. +....+++.+.+. |+++..+.+.++ |..+ .+.+....+.+..+|.|||.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~-p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~ 85 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGI-PLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNY 85 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTC-CCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHC-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccccc
Confidence 566665432 4456666666442 667766665542 1111 1234444445678999999996
Q ss_pred ---HHHHHHHHHHHHc---CCCCceEEEEC
Q 022128 112 ---EAGSVFLEAWKEA---GTPNVRIGVVG 135 (302)
Q Consensus 112 ---~av~~f~~~l~~~---~~~~~~i~aVG 135 (302)
..++.|++.+... .+.+.++++++
T Consensus 86 ~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~ 115 (193)
T 1rtt_A 86 SMAGVLKNAIDWASRPPEQPFSGKPAAILG 115 (193)
T ss_dssp EECHHHHHHHHHHTCSSSCTTTTCEEEEEE
T ss_pred CcCHHHHHHHHHhccccCcccCCCeEEEEE
Confidence 5678888876542 24455555443
No 212
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=56.83 E-value=54 Score=23.87 Aligned_cols=110 Identities=12% Similarity=0.085 Sum_probs=67.4
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHh-CCCeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEEC-----cHHHHHHHHHh
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVAS-----PSAVRSSWVNL 247 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivftS-----~s~v~~~~~~~ 247 (302)
..+||++..+.. +..|.+.|+. .|++|.... ...+.++.+ ..+|+|++-- .+..+ +++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~---------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~--~~~~ 72 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVE---------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLE--VLSA 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEEC---------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHH--HHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEEC---------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHH--HHHH
Confidence 368999877654 5778888988 887654211 112223222 3578877642 22333 4444
Q ss_pred hhcc-cCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 248 ISDT-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 248 l~~~-~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
+++. .....++++++ +.....+.+.|... ++.+..+.+.|.+.|...++.+
T Consensus 73 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 73 IRNNSRTANTPVIIATKSDNPGYRHAALKFKVSD-YILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSE-EEESSCCTTHHHHHHHHHHCC-
T ss_pred HHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCE-EEECCCCHHHHHHHHHHHHHhc
Confidence 5441 12356666664 34555666789875 5677789999999999987654
No 213
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=56.47 E-value=3.5 Score=35.61 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCCChHHHHHHHHhCCCcEEEeceEEee-eCCCchHHHHHHhcCCCccEEEEeC
Q 022128 57 RERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (302)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~-~~~~~~~l~~~l~~l~~~d~IifTS 110 (302)
.+......+.++|+..|+++..+|.-+.. ..++. ++.+.+||.|||..
T Consensus 37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred CccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 34456778999999999999988643111 11111 11356899999986
No 214
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=56.26 E-value=46 Score=31.71 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=37.8
Q ss_pred HHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEE--ECHHHHHHHHHcCCCeEEecCC
Q 022128 220 QTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPTH 282 (302)
Q Consensus 220 ~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~--IG~~Ta~~l~~~G~~~~~v~~~ 282 (302)
++.++.+ .+.+.++.|...... .+.-..-+... +.++++ -.+...+.+++.|...++.++.
T Consensus 182 ~~~L~~a~i~~a~~vi~t~~D~~n-~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~Gad~vi~p~~ 246 (565)
T 4gx0_A 182 AHVLAGLRVAAARSIIANLSDPDN-ANLCLTVRSLC-QTPIIAVVKEPVHGELLRLAGANQVVPLTR 246 (565)
T ss_dssp HHHHHHTTGGGCSEEEECSCHHHH-HHHHHHHHTTC-CCCEEEECSSGGGHHHHHHHTCSEEECHHH
T ss_pred HHHHHhcCcccCCEEEEeCCcHHH-HHHHHHHHHhc-CceEEEEECCHHHHHHHHHcCCCEEEChHH
Confidence 3344443 578888888777666 44333222212 555555 3677888899999998665443
No 215
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=56.05 E-value=44 Score=27.03 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=63.2
Q ss_pred eChHHHHHHHHHHHHcCCC-CceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCC-
Q 022128 109 TSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS- 186 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~~-~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg- 186 (302)
.|+.+++...+.+...+.+ ++.+ ..|.... .+... ..++..+.....+.+ +.+.+.+...+|+++++...
T Consensus 85 ~s~~~~~~a~~~~~~~g~~~~v~~-~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 85 PRADRIENIQKNIDTYGLSPRMRA-VQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCHHHHHHHHHHHHHTTCTTTEEE-EESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCHHHHHHHHHHHHHcCCCCCEEE-EeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecC
Confidence 4677777776666666665 4443 4455432 12211 145555543334455 66666665556778776544
Q ss_pred CcchhhHHHHHHhCCCeeEEEeeeeeecCCC
Q 022128 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (302)
Q Consensus 187 ~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~ 217 (302)
......+.+.|++.|+++..+.+++..+...
T Consensus 157 ~~~~~~~~~~l~~~g~~i~~i~~~~~~~~~~ 187 (204)
T 3njr_A 157 LESETLLTQLHARHGGQLLRIDIAQAEPLGR 187 (204)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEEEEEEEETT
T ss_pred cccHHHHHHHHHhCCCcEEEEEeecccccCc
Confidence 4455678888999999999999988887654
No 216
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=55.94 E-value=1.1e+02 Score=27.26 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=41.5
Q ss_pred CCEEEEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-cHHHHHHc---CCCCEEEEE----CcHHHHHHHHHhh
Q 022128 178 KCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQA---LSIPVVAVA----SPSAVRSSWVNLI 248 (302)
Q Consensus 178 ~~~vL~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-~~~~~~~~---~~~d~ivft----S~s~v~~~~~~~l 248 (302)
.++|-++ ++..-...+.+.+..+|.-+..+.-.=..+.... ..++++.+ .+-++|++. +... + .|++.+
T Consensus 168 ~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-~-~~~~~~ 245 (334)
T 3mwd_B 168 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-Y-KICRGI 245 (334)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-H-HHHHHH
T ss_pred CCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-H-HHHHHH
Confidence 3466555 4433345677778888877776666555543332 24455443 356678877 3333 5 677777
Q ss_pred hc
Q 022128 249 SD 250 (302)
Q Consensus 249 ~~ 250 (302)
++
T Consensus 246 r~ 247 (334)
T 3mwd_B 246 KE 247 (334)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 217
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=55.90 E-value=10 Score=31.23 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=37.7
Q ss_pred hHHHHHHhC--CCeeEEEeeeeeecCCCC-------------------------cHHHHHHcCCCCEEEEECc-------
Q 022128 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 237 (302)
Q Consensus 192 ~L~~~L~~~--G~~v~~~~vY~~~~~~~~-------------------------~~~~~~~~~~~d~ivftS~------- 237 (302)
.+.+.|++. |.+|+.+.+|+...+... ..++.+.+...|.|+|.||
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 456777766 899999999876422111 0112233467899999886
Q ss_pred HHHHHHHHHhh
Q 022128 238 SAVRSSWVNLI 248 (302)
Q Consensus 238 s~v~~~~~~~l 248 (302)
..++ .|++.+
T Consensus 104 a~lK-~~iD~~ 113 (212)
T 3r6w_A 104 SGLK-AWIDQI 113 (212)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHHHH
Confidence 5788 898887
No 218
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=55.82 E-value=66 Score=24.56 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=60.5
Q ss_pred cEEEE-eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEE
Q 022128 104 DWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVL 182 (302)
Q Consensus 104 d~Iif-TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL 182 (302)
..+.+ .|+..++...+.+...+.+++.+. .|.... .+... .++..+.....+.+.+.+.+.+. +++.++
T Consensus 59 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~ 128 (183)
T 2yxd_A 59 FVYAIDYLDGAIEVTKQNLAKFNIKNCQII-KGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIV 128 (183)
T ss_dssp EEEEEECSHHHHHHHHHHHHHTTCCSEEEE-ESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCCcEEEE-ECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEE
Confidence 34333 477788777777776666555543 444443 33332 45554432224566666777666 566766
Q ss_pred EeC-CCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 183 YPA-SAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 183 ~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
+.. .......+.+.|++.|+++..+......
T Consensus 129 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 160 (183)
T 2yxd_A 129 ANTIVLENAAKIINEFESRGYNVDAVNVFISY 160 (183)
T ss_dssp EEESCHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEecccccHHHHHHHHHHcCCeEEEEEeeeeh
Confidence 654 4455677899999999888776554443
No 219
>1p90_A NAFY protein, hypothetical protein; ribonuclease H motif, protein binding; 1.80A {Azotobacter vinelandii} SCOP: c.55.5.2
Probab=55.74 E-value=13 Score=29.10 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=32.7
Q ss_pred EECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 260 CIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 260 ~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
-||+...+.|++.|++++.....-+.++.++.+...++..+
T Consensus 75 ~iG~~a~~~L~~~GI~v~~~~~~~~i~eal~~l~~~L~~~~ 115 (145)
T 1p90_A 75 SIGGPAAAKVVRAGIHPLKKPKGCAAQEAIAELQTVMAGSP 115 (145)
T ss_dssp BCCHHHHHHHHHTTCEEEECTTCEEHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHhcCCC
Confidence 48999999999999998665456688999988877765443
No 220
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=55.70 E-value=13 Score=31.37 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=34.9
Q ss_pred CccEEEEeC---------hHHHHHHHHHHHHc--CCCCceEEEEChhhHHHHHHHhhccCCCCce
Q 022128 102 IFDWIIITS---------PEAGSVFLEAWKEA--GTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (302)
Q Consensus 102 ~~d~IifTS---------~~av~~f~~~l~~~--~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~ 155 (302)
+..+||||| .|-++...+.+.+. .-.++++++||.+....+++. |..+
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i 115 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNV 115 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCce
Confidence 356999999 66677665555432 113578999999999999987 7655
No 221
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=55.43 E-value=1e+02 Score=26.68 Aligned_cols=179 Identities=14% Similarity=0.094 Sum_probs=91.5
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceE------EeeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHHHHHH
Q 022128 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAW 121 (302)
Q Consensus 50 g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~------~~~~~~~~~~l~~~l~~l~~~d~I-ifTS~~av~~f~~~l 121 (302)
.++|+|.-..++ .....+.+.+.|++++ .|+- ++...+-+..+.+.... ...|.+ +||.+..+....+.+
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v-~~VnP~~~g~~i~G~~vy~sl~el~~~-~~~Dv~Ii~vp~~~~~~~~~ea 84 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIV-AGVTPGKGGMEVLGVPVYDTVKEAVAH-HEVDASIIFVPAPAAADAALEA 84 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHH-SCCSEEEECCCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEE-EEECCCCCCceECCEEeeCCHHHHhhc-CCCCEEEEecCHHHHHHHHHHH
Confidence 467888875433 4556677777898843 2321 11001112234444421 145654 578888888777777
Q ss_pred HHcCCCCceEEEECh------hhHHHHHHHhhccCCCCceeccCCCc---cH-HHHHHhcccCCCCCCEEEEeC-CCcch
Q 022128 122 KEAGTPNVRIGVVGA------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPA-SAKAS 190 (302)
Q Consensus 122 ~~~~~~~~~i~aVG~------~Ta~~l~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~r-g~~~~ 190 (302)
.+.+.+.+-+++-|- .-.+.+++. |+.+ +.|... +. ..+.-.++....+.++|-++. +..-.
T Consensus 85 ~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~------gi~v-igPNc~Gii~~~~~~~~~~~~~~~~~G~va~vsqSG~l~ 157 (288)
T 1oi7_A 85 AHAGIPLIVLITEGIPTLDMVRAVEEIKAL------GSRL-IGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLT 157 (288)
T ss_dssp HHTTCSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-EESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EeCCCCeEEcCCCceeEEcccCCCCCCCEEEEECCHHHH
Confidence 776543222333231 233444455 7754 334311 11 111111222212335666554 33334
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecC-CCCcHHHHHHc---CCCCEEEEECc
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASP 237 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~ivftS~ 237 (302)
..+.+.+..+|.-+..+.-.=..+. .....++++.+ .+-++|++...
T Consensus 158 ~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E 208 (288)
T 1oi7_A 158 YEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGE 208 (288)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 5677788888888877776666653 22334455544 35667777755
No 222
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=55.42 E-value=89 Score=27.64 Aligned_cols=168 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred CeEEEeCCCCChHHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022128 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~ 128 (302)
|+|+++..........+.|. ..|+++...+- .. +.+++. +.+.++|.++..+...+ +.+++.+.+. +
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~-~~~~~~---~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----YL-NTKETA---EMAAGFDAVILRGNCFANKQNLDIYKKL---G 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----CS-CSHHHH---HTTTTCSEEEECTTCCBCHHHHHHHHHH---T
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----CC-CHHHHH---HHhcCCeEEEEeCCCCCCHHHHhhCccc---C
Confidence 57888754444455555564 35666544321 11 113232 34678999887542222 2344555442 2
Q ss_pred ceEEEE-Chh----hHHHHHHHhhccCCCCceeccCCCccHHHHHH----hc---c-------------c--C-------
Q 022128 129 VRIGVV-GAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILAS----EL---P-------------K--N------- 174 (302)
Q Consensus 129 ~~i~aV-G~~----Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~----~L---~-------------~--~------- 174 (302)
+|+++. |.+ -.+++++. |+.+.-+|. ++++.+++ .+ . . +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 444432 222 23566777 988876664 22222111 11 0 0 1
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-----cHHHHHHcCCCCEEEEECcHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~~~~~d~ivftS~s~ 239 (302)
...+++|.++.-..-...+.+.|+..|++|. +|.+.+.... ...+-+.+...|+|++.-|.+
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t 209 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVI---GEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYI 209 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCccHHHHhccccCCHHHHHhhCCEEEEecCCc
Confidence 0157789888766666778999999998864 4444332210 001111234678888875543
No 223
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=55.17 E-value=27 Score=25.64 Aligned_cols=109 Identities=11% Similarity=0.042 Sum_probs=63.3
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~ 250 (302)
..+||++..+.. +..|...|+..|++|. .+. ...+..+.+ ..+|+|++-- ....+ +++.+++
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~--~~~~l~~ 75 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHII---SAD------SGGQCIDLLKKGFSGVVLLDIMMPGMDGWD--TIRAILD 75 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEE---EES------SHHHHHHHHHTCCCEEEEEESCCSSSCHHH--HHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEE---EeC------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 468998877654 5788889998886542 111 112222222 4678777642 12333 4444443
Q ss_pred c-cCCCceEEEECHHH----HHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 251 T-EQWSNSVACIGETT----ASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 251 ~-~~~~~~i~~IG~~T----a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
. .....++++++... ...+.+.|... ++.+..+.+.|.+.|...++.
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 76 NSLEQGIAIVMLTAKNAPDAKMIGLQEYVVD-YITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp TTCCTTEEEEEEECTTCCCCSSTTGGGGEEE-EEESSCCHHHHHHHHHHHHHH
T ss_pred hcccCCCCEEEEECCCCHHHHHHHHhcCccE-EEeCCCCHHHHHHHHHHHHHH
Confidence 2 12346777765432 23344556654 566777999999998887653
No 224
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=55.15 E-value=1.2e+02 Score=27.20 Aligned_cols=169 Identities=12% Similarity=0.085 Sum_probs=91.8
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCC
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGT 126 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~ 126 (302)
...++||++.+-. ++..+.|++. +++...+.- . ..+.+++.+ .+.++|.++..+..-+ +.+++.+ .
T Consensus 26 ~~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~~--~-~~~~~~l~~---~~~~~d~li~~~~~~i~~~~l~~~----~ 92 (345)
T 4g2n_A 26 HPIQKAFLCRRFT--PAIEAELRQR-FDLEVNLED--T-VLTPSGIAS---RAHGAEVLFVTATEAITAEVIRKL----Q 92 (345)
T ss_dssp -CCCEEEESSCCC--HHHHHHHHHH-SEEEECTTC--C-CCCHHHHHH---HTTTCSEEEECTTSCBCHHHHHHT----T
T ss_pred CCCCEEEEeCCCC--HHHHHHHHcc-CCEEEecCC--C-CCCHHHHHH---HhcCCeEEEEeCCCCCCHHHHHhh----c
Confidence 3467899998754 4566677665 455432210 1 112233433 4578999987653322 2223322 1
Q ss_pred CCceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-----c--c-------------cC-------
Q 022128 127 PNVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L--P-------------KN------- 174 (302)
Q Consensus 127 ~~~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L--~-------------~~------- 174 (302)
+++|+++ .|.++ .+++++. |+.+.-.|. .+++..++. | . .|
T Consensus 93 ~~Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~ 165 (345)
T 4g2n_A 93 PGLKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQ 165 (345)
T ss_dssp TTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTT
T ss_pred CCceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccc
Confidence 3556553 23322 3667777 998877764 333333221 0 0 01
Q ss_pred ----CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCC-----C--cHHHHHHcCCCCEEEEECcHH
Q 022128 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----V--DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ----~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~-----~--~~~~~~~~~~~d~ivftS~s~ 239 (302)
...|++|.++.-..-...+...|+..|.+|.. |.+.+.+. . ...+-+.+...|+|++.-|.+
T Consensus 166 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~---~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt 238 (345)
T 4g2n_A 166 LLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY---HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGR 238 (345)
T ss_dssp TCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE---ECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCC
T ss_pred ccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE---ECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCC
Confidence 12578899997766677889999999987644 54432110 0 001112235778888887743
No 225
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=55.03 E-value=8 Score=33.97 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=46.9
Q ss_pred CCEEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCCCC-----------------------------c-
Q 022128 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----------------------------D- 219 (302)
Q Consensus 178 ~~~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------------------------~- 219 (302)
.-|||++-|-.. .+.+.+.|++.|.+|+.+.+|+....+.. .
T Consensus 22 ~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (280)
T 4gi5_A 22 SMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSA 101 (280)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcH
Confidence 457888866322 24577889999999999999986543211 0
Q ss_pred --HHHHHHcCCCCEEEEEC-------cHHHHHHHHHhh
Q 022128 220 --QTVLKQALSIPVVAVAS-------PSAVRSSWVNLI 248 (302)
Q Consensus 220 --~~~~~~~~~~d~ivftS-------~s~v~~~~~~~l 248 (302)
....+.+...|.|||.+ |..++ .|++.+
T Consensus 102 dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK-~~iDrv 138 (280)
T 4gi5_A 102 DIVAEQEKLLWADTVIFQFPLWWFSMPAIMK-GWIDRV 138 (280)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEeccccccCcHHHH-HHHHHh
Confidence 11122234678888876 57889 888776
No 226
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=54.97 E-value=9.4 Score=28.60 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-------H--HHHHHHHHHHcCCCCceEEEE
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-------a--v~~f~~~l~~~~~~~~~i~aV 134 (302)
.+.+.+++.|+++..+.+ .+.+ . . ++.++|.|||-||. . ++.|++.+.. .+.+.+++++
T Consensus 19 ~i~~~l~~~g~~v~~~~~------~~~~-~-~---~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~ 86 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRF------EDTN-V-D---DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLF 86 (137)
T ss_dssp HHHHHHHHTTCCEEEEET------TSCC-H-H---HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEE
T ss_pred HHHHHHHhCCCeEEEEEc------ccCC-H-H---HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEE
Confidence 344556667887765442 2211 1 1 23578999999876 2 7788877643 3567777777
Q ss_pred C
Q 022128 135 G 135 (302)
Q Consensus 135 G 135 (302)
|
T Consensus 87 ~ 87 (137)
T 2fz5_A 87 G 87 (137)
T ss_dssp E
T ss_pred E
Confidence 6
No 227
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=54.92 E-value=16 Score=30.35 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=33.2
Q ss_pred cCCCCEEEEECcHHHHHHHH--HhhhcccCCCceEEE--ECHHHHHHHHHcCCCeEEecC
Q 022128 226 ALSIPVVAVASPSAVRSSWV--NLISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 226 ~~~~d~ivftS~s~v~~~~~--~~l~~~~~~~~~i~~--IG~~Ta~~l~~~G~~~~~v~~ 281 (302)
+.+.|.|+++.+.... +.. ..+++.. .+.++++ -.+...+.++++|...++.|.
T Consensus 69 i~~ad~vi~~~~~d~~-n~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~G~~~vi~p~ 126 (234)
T 2aef_A 69 VRGARAVIVDLESDSE-TIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 126 (234)
T ss_dssp CTTCSEEEECCSCHHH-HHHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHHTCSEEECHH
T ss_pred cchhcEEEEcCCCcHH-HHHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHCCCCEEECHH
Confidence 4678988888776544 332 2233221 2335554 467778889999999765544
No 228
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=54.85 E-value=25 Score=32.43 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=25.5
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
++++|+++.|..-...+...+++.|++|..+.
T Consensus 34 ~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d 65 (419)
T 4e4t_A 34 PGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLD 65 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 67899999876656678889999999876554
No 229
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=54.68 E-value=50 Score=29.73 Aligned_cols=153 Identities=11% Similarity=0.010 Sum_probs=86.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH--H-HHHHHHHHHcCCCCceEEE-EChhh-
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV-VGAGT- 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a--v-~~f~~~l~~~~~~~~~i~a-VG~~T- 138 (302)
.+.+.|++.|++++..+--.. +.+++.+ .+.++|.|+.++-.. + +.+++ . .+++|+++ .|-++
T Consensus 31 ~~~~~L~~~g~ev~~~~~~~~----~~~~~~~---~~~~ad~li~~~~~~~~~~~~~l~---~--~p~Lk~i~~~g~G~d 98 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDKEG----PDCELEK---HIPDLHVLISTPFHPAYVTAERIK---K--AKNLKLLLTAGIGSD 98 (351)
T ss_dssp GCHHHHHHTTCEEEEESCCSS----TTSHHHH---HTTTCSEEEECTTSCCCBCHHHHH---H--CSSCCEEEESSSCCT
T ss_pred HHHHHHHHCCCEEEEeCCCCC----CHHHHHH---HhCCCEEEEEccCCCCCCCHHHHh---h--CCCCeEEEEeCeeec
Confidence 578899999999886653221 2233444 457889888654211 1 11222 2 24566654 23222
Q ss_pred ---HHHHHHHhhccCCCCceeccCCCccHHHHHH-------hcc-----------------------cCCCCCCEEEEeC
Q 022128 139 ---ASIFEEVIQSSKCSLDVAFSPSKATGKILAS-------ELP-----------------------KNGKKKCTVLYPA 185 (302)
Q Consensus 139 ---a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~-------~L~-----------------------~~~~~~~~vL~~r 185 (302)
.+++.+. |+.+.-+|.. +++..++ .+. .....|++|.++.
T Consensus 99 ~id~~~a~~~------gI~V~n~~g~-~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG 171 (351)
T 3jtm_A 99 HIDLQAAAAA------GLTVAEVTGS-NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVG 171 (351)
T ss_dssp TBCHHHHHHT------TCEEEECTTT-THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC
T ss_pred ccCHHHHHhc------CeeEEECCCc-CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEE
Confidence 3567777 9988776642 2322222 111 0112578999997
Q ss_pred CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCc---------HHHHHHcCCCCEEEEECcH
Q 022128 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD---------QTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~---------~~~~~~~~~~d~ivftS~s 238 (302)
-..-...+...|+..|++| ..|.+.+.+... ..+-+.+...|+|++.-|.
T Consensus 172 ~G~IG~~vA~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Pl 230 (351)
T 3jtm_A 172 AGRIGKLLLQRLKPFGCNL---LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPL 230 (351)
T ss_dssp CSHHHHHHHHHHGGGCCEE---EEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCC
T ss_pred eCHHHHHHHHHHHHCCCEE---EEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCC
Confidence 7666778899999999875 455543311100 0111223578999988875
No 230
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=54.67 E-value=11 Score=32.37 Aligned_cols=55 Identities=15% Similarity=0.028 Sum_probs=37.8
Q ss_pred CCCeEEEeCC--CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.+|+|++.+. .+....+...|++.|+++..+.+..-.+.++ .+.++|.||++-..
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GGp 58 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGGP 58 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCCC
Confidence 3678888863 3556778899999999988776654332221 24568999998543
No 231
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=54.15 E-value=17 Score=29.14 Aligned_cols=57 Identities=7% Similarity=0.180 Sum_probs=36.0
Q ss_pred hHHHHHHhC------CCeeEEEeeeeeecCCC-----------------Cc---HHHHHHcCCCCEEEEECc-------H
Q 022128 192 EIEEGLSNR------GFEVVRLNTYTTEPVHH-----------------VD---QTVLKQALSIPVVAVASP-------S 238 (302)
Q Consensus 192 ~L~~~L~~~------G~~v~~~~vY~~~~~~~-----------------~~---~~~~~~~~~~d~ivftS~-------s 238 (302)
.+.+.|++. |.+|+.+.+++...... .. ....+.+...|.|+|.|| .
T Consensus 22 ~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iI~~sP~y~~~~p~ 101 (191)
T 1t0i_A 22 YVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRIVNALDIIVFVTPQYNWGYPA 101 (191)
T ss_dssp HHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHHHHTCSEEEEEEECBTTBCCH
T ss_pred HHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHHHHhCCEEEEEeceECCCCCH
Confidence 445556655 68888888876422110 01 123344578999999995 6
Q ss_pred HHHHHHHHhhh
Q 022128 239 AVRSSWVNLIS 249 (302)
Q Consensus 239 ~v~~~~~~~l~ 249 (302)
.++ .|++.+.
T Consensus 102 ~lK-~~iD~~~ 111 (191)
T 1t0i_A 102 ALK-NAIDRLY 111 (191)
T ss_dssp HHH-HHHHTCS
T ss_pred HHH-HHHHHHH
Confidence 788 8888764
No 232
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=54.15 E-value=46 Score=29.63 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=87.2
Q ss_pred CeEEEeCCCCChHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022128 51 PKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~ 128 (302)
|+|+++..........+.| +..|+++...+-. .. +++ .+.+.++|.++..+...+ +.+++.+.+. +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--ENT---VEWAKGFDGINSLQTTPYAAGVFEKMHAY---G 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TTG---GGGGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HHH---HHHhcCCeEEEEcCCCCCCHHHHHhCccc---C
Confidence 5688865433344445555 3457776554321 11 112 223578899887542221 2344555442 2
Q ss_pred ceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHH----h-c--cc----------------------C
Q 022128 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILAS----E-L--PK----------------------N 174 (302)
Q Consensus 129 ~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~----~-L--~~----------------------~ 174 (302)
+|+++ .|.++ .+++++. |+.+.-+|. ++++.+++ . | .+ .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 44432 23222 3556777 998877664 23222211 1 1 00 0
Q ss_pred CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-----cHHHHHHcCCCCEEEEECcHH
Q 022128 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 175 ~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-----~~~~~~~~~~~d~ivftS~s~ 239 (302)
...|++|.++.-..-...+.+.|+..|++|. +|.+.+.... ...+-+.+...|+|++.-|.+
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVI---AYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 1157889999776667778999999998875 4444332110 001111234678888887754
No 233
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=54.14 E-value=14 Score=33.97 Aligned_cols=162 Identities=11% Similarity=0.094 Sum_probs=88.0
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~~~~~~ 128 (302)
+|+|+++...+. ..+.|++.| ++...|--.+ . .+ .+.++|.++..|..-+. .+++ . .+
T Consensus 3 mmkIl~~~~~p~---~~~~~~~~~-~v~~~~~~~~----~----~~---~l~~ad~li~~~~~~v~~~ll~-----~-~~ 61 (381)
T 3oet_A 3 AMKILVDENMPY---ARELFSRLG-EVKAVPGRPI----P----VE---ELNHADALMVRSVTKVNESLLS-----G-TP 61 (381)
T ss_dssp CCEEEEETTSTT---HHHHHTTSS-EEEEECC-------C----HH---HHTTCSEEEECTTSCBSHHHHT-----T-SC
T ss_pred ceEEEECCCCcH---HHHHHhhCC-cEEEeCCCCC----C----HH---HHCCCEEEEECCCCCCCHHHHc-----C-CC
Confidence 489999876543 345666666 5554332111 1 11 24678999887643222 2222 1 23
Q ss_pred ceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------ccc---CCCCCCEEEEeCCCcchhhH
Q 022128 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------LPK---NGKKKCTVLYPASAKASNEI 193 (302)
Q Consensus 129 ~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L~~---~~~~~~~vL~~rg~~~~~~L 193 (302)
+|+++ .|.++ .+++++. |+.+...|. .+++.+++. +.+ ....|++|.++.-..-...+
T Consensus 62 Lk~I~~~~~G~D~iD~~~~~~~------gI~v~n~pg-~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~v 134 (381)
T 3oet_A 62 INFVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRL 134 (381)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHH
T ss_pred CEEEEEccccccccCHHHHHhC------CEEEEECCC-cCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHH
Confidence 56543 33333 3567777 998876664 333333221 111 11268899999776667778
Q ss_pred HHHHHhCCCeeEEEeeeeeecCC-CCcHHHHHHcCCCCEEEEECcHH
Q 022128 194 EEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 194 ~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~ivftS~s~ 239 (302)
...|+..|.+|..+..+...... .....+-+.+...|+|++.-|.+
T Consensus 135 A~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 181 (381)
T 3oet_A 135 QTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLY 181 (381)
T ss_dssp HHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCC
T ss_pred HHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCC
Confidence 99999999887655443221100 01111111234678888877644
No 234
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=54.03 E-value=1.2e+02 Score=26.80 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC--c-----HHHHHHcCCCCEEEEECcHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--D-----QTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~-----~~~~~~~~~~d~ivftS~s~ 239 (302)
.|++|.++.-..-...+...|+..|++|. .|.+.+.... . ..+-+.+...|+|++.-|.+
T Consensus 138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt 204 (315)
T 3pp8_A 138 EEFSVGIMGAGVLGAKVAESLQAWGFPLR---CWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNT 204 (315)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCCEE---EEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCc
Confidence 57889999776667778999999998774 4544332211 0 12222245789998886643
No 235
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=53.98 E-value=61 Score=23.62 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~ 250 (302)
..+||++-.+. .+..+...|+..|+.|... . ...+.++.+ ..+|+|++-- .+..+ +++.+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~-~~~~al~~~~~~~~dlvl~D~~lp~~~g~~--~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------A-SGEEALQQIYKNLPDALICDVLLPGIDGYT--LCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------S-SHHHHHHHHHHSCCSEEEEESCCSSSCHHH--HHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------C-CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH--HHHHHHc
Confidence 35788887655 4678888899988765321 1 122222222 5788877742 12333 3344443
Q ss_pred cc-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 TE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.. ....++++++ ......+.+.|... ++.+..+.+.|++.|...+...
T Consensus 73 ~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 73 HPLTKTLPILMLTAQGDISAKIAGFEAGAND-YLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHHTCSE-EEETTCCHHHHHHHHHHHHHC-
T ss_pred CCCcCCccEEEEecCCCHHHHHHHHhcCcce-EEeCCCCHHHHHHHHHHHHhcc
Confidence 21 2245666554 33445566779875 6778889999999999887643
No 236
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=53.87 E-value=60 Score=23.46 Aligned_cols=108 Identities=14% Similarity=0.127 Sum_probs=64.4
Q ss_pred CEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC---------cHHHHHHHHH
Q 022128 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS---------PSAVRSSWVN 246 (302)
Q Consensus 179 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS---------~s~v~~~~~~ 246 (302)
.+||++..+.. +..+.+.|+..|+.|... . ...+..+.+ ..+|+|++-- ....+ +++
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~--~~~ 72 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITL---S------SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLF--WLH 72 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEE---C------CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHH--HHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEe---C------CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHH--HHH
Confidence 57888876654 567888898888765321 1 112222222 4678877642 22333 334
Q ss_pred hhhcccCCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 247 LISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 247 ~l~~~~~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.+.+. ....++++++. .....+.+.|... ++.+..+.+.|.+.|...++.+
T Consensus 73 ~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 73 EIKRQ-YRDLPVVLFTAYADIDLAVRGIKEGASD-FVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp HHHHH-CTTCCEEEEEEGGGHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTCC
T ss_pred HHHhh-CcCCCEEEEECCCCHHHHHHHHHcCchh-eeeCCCCHHHHHHHHHHHHHhc
Confidence 44432 22456666542 2445566678875 5567778999999999887644
No 237
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=53.80 E-value=26 Score=30.41 Aligned_cols=111 Identities=14% Similarity=0.105 Sum_probs=65.1
Q ss_pred CCCeEEEeCCCCChHHH----HH-H--------HHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH-
Q 022128 49 SNPKVVVTRERGKNGKL----IK-A--------LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA- 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l----~~-~--------L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a- 113 (302)
.+.+|++..+.++.-.+ .. . |+.+ |++|+.+-.- +| .+.+.+.... .+.|.|.+++...
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~--vp---~e~iv~aa~e-~~~d~VglS~l~t~ 192 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQ--VA---NEDFIKKAVE-LEADVLLVSQTVTQ 192 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSS--BC---HHHHHHHHHH-TTCSEEEEECCCCT
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCC--CC---HHHHHHHHHH-cCCCEEEEEeecCC
Confidence 35678877655432222 22 2 7888 9999987652 22 2344444422 4678888766332
Q ss_pred -------HHHHHHHHHHcCCC-CceEEEEChhhHH-HHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 114 -------GSVFLEAWKEAGTP-NVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 114 -------v~~f~~~l~~~~~~-~~~i~aVG~~Ta~-~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
+..+.+.+++.+.. ++++++=|..+.. .+++. |....+ ++...+..+++.|.
T Consensus 193 ~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~i------Gad~~~-~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 193 KNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKEL------GYDAGF-GPGRFADDVATFAV 253 (262)
T ss_dssp TSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHc------CCeEEE-CCchHHHHHHHHHH
Confidence 34456677776653 5888888875544 44444 877644 44455666665554
No 238
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.68 E-value=58 Score=23.28 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=66.0
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~~ 250 (302)
+.+||++..+.. +..+.+.|++.|+.|.. +. ...+..+.+ ..+|+|++--. ...+ +++.+++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~--~~~~l~~ 74 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEI---AH------NGFDAGIKLSTFEPAIMTLDLSMPKLDGLD--VIRSLRQ 74 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHTCCSEEEEESCBTTBCHHH--HHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEE---eC------CHHHHHHHHHhcCCCEEEEecCCCCCCHHH--HHHHHHh
Confidence 468999977654 57788899998876532 11 112222222 57888777532 2333 4455544
Q ss_pred ccC-CCceEEEECH---HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 TEQ-WSNSVACIGE---TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~~~-~~~~i~~IG~---~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
... ...+++.++. .....+.+.|... ++.+..+.+.|++.|......+
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTEGADD-YLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHHTCCE-EECSSCCHHHHHHHHHHHHC--
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHhChHH-HhhCCCCHHHHHHHHHHHcCCC
Confidence 322 2355665543 2444556678875 6678889999999999887644
No 239
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}
Probab=53.63 E-value=1.2e+02 Score=26.92 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=90.2
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~ 128 (302)
.++|+++.+. .+...+.|++.|+++...+ ..+.+++.+ .+.++|.++..+..-+ +.+++. .++
T Consensus 26 ~~~vli~~~~--~~~~~~~l~~~~~~v~~~~------~~~~~~~~~---~~~~~d~li~~~~~~~~~~~l~~-----~~~ 89 (335)
T 2g76_A 26 LRKVLISDSL--DPCCRKILQDGGLQVVEKQ------NLSKEELIA---ELQDCEGLIVRSATKVTADVINA-----AEK 89 (335)
T ss_dssp CCEEEECSCC--CHHHHHHHHHHTCEEEECC------SCCHHHHHH---HGGGCSEEEECSSSCBCHHHHHH-----CSS
T ss_pred ceEEEEcCCC--CHHHHHHHHhCCCEEEECC------CCCHHHHHH---HhcCceEEEEcCCCCCCHHHHhh-----CCC
Confidence 4579998764 3556778888787765432 112334433 3467898887543211 112222 245
Q ss_pred ceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHH-------hcc-------------cC--------C
Q 022128 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILAS-------ELP-------------KN--------G 175 (302)
Q Consensus 129 ~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~-------~L~-------------~~--------~ 175 (302)
+|+++ .|.++ -+++++. |+.+...|. ++++.+++ .+. .| .
T Consensus 90 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~ 162 (335)
T 2g76_A 90 LQVVGRAGTGVDNVDLEAATRK------GILVMNTPN-GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 162 (335)
T ss_dssp CCEEEESSSSCTTBCHHHHHHH------TCEEECCSS-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCC
T ss_pred CcEEEECCCCcchhChHHHHhC------CeEEEECCC-ccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcC
Confidence 56543 23322 3566777 998876664 23333222 110 01 1
Q ss_pred CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-------cHHHHHHcCCCCEEEEECcHH
Q 022128 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 176 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~ivftS~s~ 239 (302)
..|++|.++.-..-...+.+.|+..|.+|. +|.+.+.... ...+.+.+...|+|++.-|.+
T Consensus 163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t 230 (335)
T 2g76_A 163 LNGKTLGILGLGRIGREVATRMQSFGMKTI---GYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLL 230 (335)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCEEE---EECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCC
T ss_pred CCcCEEEEEeECHHHHHHHHHHHHCCCEEE---EECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCC
Confidence 267889998766666778999999998764 4544322100 001112235778888887765
No 240
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=53.29 E-value=24 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=36.0
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
..+++|+|..-...-....+.|++.|+++..++.. + .+..+|.||++-...
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~~--------~-------~l~~~Dglil~GG~~ 71 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKKS--------E-------QLEGLDGLVLPGGES 71 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECSG--------G-------GGTTCSEEEECCCCH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECCH--------H-------HHhhCCEEEECCCCh
Confidence 44688999975443455678999999988877631 1 245799999997643
No 241
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=53.17 E-value=70 Score=28.07 Aligned_cols=137 Identities=13% Similarity=0.024 Sum_probs=75.6
Q ss_pred CCccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCce--eccCCC-ccHHHHHHhcccCCC
Q 022128 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (302)
Q Consensus 101 ~~~d~Iif-TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~L~~~~~ 176 (302)
.+.+.||= .+..........+.+. +++++..+..+. .+... ...+- .+.|.. ..+..+++.+.+.
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~-~~~~~-----~~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAAD-QIGGT-----ECNGYGIGFLYNFTSIVKTVVQAQLAK-- 140 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCCT-TTTTT-----TCCSSEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCch-hhhcc-----cCCCcEEEEeCChHHHHHHHHHHHHHc--
Confidence 57888883 4445555556666554 567777665432 22211 01111 122322 2245566666654
Q ss_pred CCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc-HHHHHHHHHhh
Q 022128 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSSWVNLI 248 (302)
Q Consensus 177 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~-s~v~~~~~~~l 248 (302)
..++|.++..+.. .+.+.+.|++.|.+|.....|.... .+. ...+..+ .++|+|++.+. ..+. .+++.+
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~-~~~l~~i~~~~~d~v~~~~~~~~~~-~~~~~~ 217 (379)
T 3n0w_A 141 GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET-QDF-SSYLLQAKASGAQLIVSTSGGAANI-NIMKQA 217 (379)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC-CCC-HHHHHHHHHHTCSEEEECCCHHHHH-HHHHHH
T ss_pred CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CCH-HHHHHHHHHCCCCEEEEecccchHH-HHHHHH
Confidence 3468877765432 4567888899999886666664332 122 2223322 47898887665 5566 677776
Q ss_pred hcc
Q 022128 249 SDT 251 (302)
Q Consensus 249 ~~~ 251 (302)
.+.
T Consensus 218 ~~~ 220 (379)
T 3n0w_A 218 REF 220 (379)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 242
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=52.90 E-value=8.5 Score=33.78 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCCC--------hHHHHHHHHhCCCcEEEeceEEe
Q 022128 48 NSNPKVVVTRERGK--------NGKLIKALAKHRIDCLELPLIQH 84 (302)
Q Consensus 48 l~g~~IlitR~~~~--------~~~l~~~L~~~G~~v~~~P~~~~ 84 (302)
...|+|||.-..+. .+.+.+.|++.|.+|..+-+++.
T Consensus 20 m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~ 64 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAM 64 (280)
T ss_dssp --CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred hhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcccc
Confidence 34678887754332 35567788899999988877653
No 243
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=52.80 E-value=18 Score=30.34 Aligned_cols=57 Identities=19% Similarity=0.139 Sum_probs=34.3
Q ss_pred HHHHHHhC-CCcEEEeceEEeeeCC--C-------------c--hHHHHHHhcCCCccEEEEeCh-------HHHHHHHH
Q 022128 65 LIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (302)
Q Consensus 65 l~~~L~~~-G~~v~~~P~~~~~~~~--~-------------~--~~l~~~l~~l~~~d~IifTS~-------~av~~f~~ 119 (302)
+.+.+++. |+++..+.+.+....+ . . +.+...++.+..+|.|||.|| ..+..|++
T Consensus 24 i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~iD 103 (242)
T 1sqs_A 24 LSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFIE 103 (242)
T ss_dssp HHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHHH
Confidence 34455555 8888777665432110 0 0 234444445677999999996 56677777
Q ss_pred HH
Q 022128 120 AW 121 (302)
Q Consensus 120 ~l 121 (302)
.+
T Consensus 104 r~ 105 (242)
T 1sqs_A 104 RI 105 (242)
T ss_dssp HT
T ss_pred HH
Confidence 65
No 244
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=52.47 E-value=1.2e+02 Score=26.54 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=89.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCC
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~ 127 (302)
..|+|+++.+- .+...+.|++.|+++.. ....+.+++.+ .+.++|.++..+..-+ ..+++.+ +
T Consensus 4 ~~mkil~~~~~--~~~~~~~l~~~~~~v~~------~~~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~~-----~ 67 (313)
T 2ekl_A 4 YTVKALITDPI--DEILIKTLREKGIQVDY------MPEISKEELLN---IIGNYDIIVVRSRTKVTKDVIEKG-----K 67 (313)
T ss_dssp CCCEEEECSCC--CHHHHHHHHHTTCEEEE------CTTCCHHHHHH---HGGGCSEEEECSSSCBCHHHHHHC-----T
T ss_pred cceEEEEECCC--CHHHHHHHHhCCcEEEe------CCCCCHHHHHH---HhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 35789998764 34567788888876532 11112334444 3467898887542211 1122222 3
Q ss_pred CceEE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHH----h---cc-------------cC------CC
Q 022128 128 NVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILAS----E---LP-------------KN------GK 176 (302)
Q Consensus 128 ~~~i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~----~---L~-------------~~------~~ 176 (302)
++|++ ..|.++ .+++.+. |+.+...|.. +++.+++ . +. .| ..
T Consensus 68 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g~-~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l 140 (313)
T 2ekl_A 68 KLKIIARAGIGLDNIDTEEAEKR------NIKVVYAPGA-STDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLEL 140 (313)
T ss_dssp TCCEEEECSSCCTTBCHHHHHHT------TCEEECCTTT-THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCeEEEEcCCCCCccCHHHHHhC------CeEEEeCCCC-CchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCC
Confidence 55554 333333 3466777 9988766642 3333222 1 10 01 12
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-------cHHHHHHcCCCCEEEEECcHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~ivftS~s~ 239 (302)
.|++|.++.-..-...+...|+..|++|. +|.+.+.... .....+.+...|+|++.-|.+
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~ 207 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKVL---AYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVS 207 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCC
Confidence 67899999776667788999999998764 5544332100 000111124568888877743
No 245
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=52.47 E-value=84 Score=27.11 Aligned_cols=159 Identities=8% Similarity=0.013 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCC-ccHHHHH
Q 022128 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILA 168 (302)
Q Consensus 91 ~~l~~~l~~l~~~d~Ii-fTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~-~~~e~L~ 168 (302)
..+.+.+. .+.+.|| ..+........+.+.+ .+++++..+......-.+.. ..-..+.|.. ..+..++
T Consensus 60 ~~~~~l~~--~~v~~iig~~~s~~~~~~~~~~~~---~~ip~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 129 (356)
T 3ipc_A 60 SVANKFVA--DGVKFVVGHANSGVSIPASEVYAE---NGILEITPAATNPVFTERGL-----WNTFRTCGRDDQQGGIAG 129 (356)
T ss_dssp HHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHT---TTCEEEESSCCCGGGGSSCC-----TTEEESSCCHHHHHHHHH
T ss_pred HHHHHHHH--CCCcEEEcCCCcHHHHHHHHHHHh---CCCeEEecCCCCcHhhcCCC-----CcEEEecCChHHHHHHHH
Q ss_pred HhcccCCCCCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEE-EECcHHHHH
Q 022128 169 SELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRS 242 (302)
Q Consensus 169 ~~L~~~~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~iv-ftS~s~v~~ 242 (302)
+.|.+.. ..++|.++.++. ....+.+.|++.|..+.....|.....+.......-...++|+|+ +.+...+.
T Consensus 130 ~~l~~~~-g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~- 207 (356)
T 3ipc_A 130 KYLADHF-KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAG- 207 (356)
T ss_dssp HHHHHHC-TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHH-
T ss_pred HHHHHhc-CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHH-
Q ss_pred HHHHhhhcccCCCceEEEEC
Q 022128 243 SWVNLISDTEQWSNSVACIG 262 (302)
Q Consensus 243 ~~~~~l~~~~~~~~~i~~IG 262 (302)
.+++.+.+... ..+++...
T Consensus 208 ~~~~~~~~~g~-~~~~~~~~ 226 (356)
T 3ipc_A 208 LIIRQAADQGL-KAKLVSGD 226 (356)
T ss_dssp HHHHHHHHHTC-CCEEEECG
T ss_pred HHHHHHHHCCC-CCcEEEec
No 246
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=52.21 E-value=35 Score=29.09 Aligned_cols=95 Identities=12% Similarity=0.048 Sum_probs=50.8
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-C
Q 022128 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (302)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~ 102 (302)
.++.+.+.-++.... ......+.|+++|||-.... ...+++.|.+.|++|+.+-. .....+.+.+.+.... .
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r----~~~~~~~~~~~~~~~~~~ 83 (275)
T 4imr_A 10 GVDLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGV----KPGSTAAVQQRIIASGGT 83 (275)
T ss_dssp --------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES----STTTTHHHHHHHHHTTCC
T ss_pred ccCcccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC----CHHHHHHHHHHHHhcCCe
Confidence 344455554544421 11224688999999986543 56789999999998875321 1122333444443322 2
Q ss_pred ccEEE--EeChHHHHHHHHHHHHcC
Q 022128 103 FDWII--ITSPEAGSVFLEAWKEAG 125 (302)
Q Consensus 103 ~d~Ii--fTS~~av~~f~~~l~~~~ 125 (302)
...+. +++...++.+++.+.+.+
T Consensus 84 ~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 84 AQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp EEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred EEEEEecCCCHHHHHHHHHHHHHhC
Confidence 22221 467888888888776654
No 247
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=52.11 E-value=74 Score=24.04 Aligned_cols=110 Identities=14% Similarity=0.103 Sum_probs=66.5
Q ss_pred CCCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEE----CcHHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivft----S~s~v~~~~~~~l~ 249 (302)
++-|||++--+. .+..+...|+..|+.+.. .. . ...+.++.+ ..+|.|+.= --+.++ +.+.++
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~----~a---~-~g~~al~~~~~~~~DlillD~~MP~mdG~e--l~~~ir 80 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQ----EA---D-DGLTALPMLKKGDFDFVVTDWNMPGMQGID--LLKNIR 80 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEE----EE---S-SHHHHHHHHHHHCCSEEEEESCCSSSCHHH--HHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEE----EE---C-CHHHHHHHHHhCCCCEEEEcCCCCCCCHHH--HHHHHH
Confidence 346899996544 577888999999975321 11 1 112222222 478877652 223344 233443
Q ss_pred ccc-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 250 DTE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 250 ~~~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
... ..+++++.+. +.....+.+.|... ++.+..+.+.|.+.|.+.++
T Consensus 81 ~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~-yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 81 ADEELKHLPVLMITAEAKREQIIEAAQAGVNG-YIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HSTTTTTCCEEEEESSCCHHHHHHHHHTTCCE-EEESSCCHHHHHHHHHHHCC
T ss_pred hCCCCCCCeEEEEECCCCHHHHHHHHHCCCCE-EEECCCCHHHHHHHHHHHHh
Confidence 321 2346666553 44556677789975 67788899999999988764
No 248
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=52.04 E-value=15 Score=29.94 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=39.1
Q ss_pred hhHHHHHHhCC--CeeEEEeee--eeecCCCCc-----------------------------HHHHHHcCCCCEEEEEC-
Q 022128 191 NEIEEGLSNRG--FEVVRLNTY--TTEPVHHVD-----------------------------QTVLKQALSIPVVAVAS- 236 (302)
Q Consensus 191 ~~L~~~L~~~G--~~v~~~~vY--~~~~~~~~~-----------------------------~~~~~~~~~~d~ivftS- 236 (302)
+.+.+.|++.| .+|+.+.+| +........ .++.+.+...|.|+|.|
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P 103 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANP 103 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEec
Confidence 35677788877 899999999 654322110 11222346789999999
Q ss_pred ------cHHHHHHHHHhhh
Q 022128 237 ------PSAVRSSWVNLIS 249 (302)
Q Consensus 237 ------~s~v~~~~~~~l~ 249 (302)
|..++ .|++.+.
T Consensus 104 ~y~~~~pa~lK-~~iD~~~ 121 (208)
T 2hpv_A 104 MWNLNVPTRLK-AWVDTIN 121 (208)
T ss_dssp CBTTBCCHHHH-HHHHHHC
T ss_pred cccCCCCHHHH-HHHHHHh
Confidence 57889 8988864
No 249
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=51.55 E-value=67 Score=23.35 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC--cHHHHHHHHHhhhccc
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSSWVNLISDTE 252 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS--~s~v~~~~~~~l~~~~ 252 (302)
..+||++..+.. +..+.+.|...|++|. .+. ...+.++.+ ..+|+|++-- ....- .++..+.+.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~l~~~~~dlvi~d~~~~~~g~-~~~~~l~~~- 72 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVI---WAK------NEQEAFTFLRREKIDLVFVDVFEGEESL-NLIRRIREE- 72 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEE---EES------SHHHHHHHHTTSCCSEEEEECTTTHHHH-HHHHHHHHH-
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEE---EEC------CHHHHHHHHhccCCCEEEEeCCCCCcHH-HHHHHHHHH-
Confidence 357888877654 5778889998887653 111 122233333 4688887753 11222 234444432
Q ss_pred CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 253 QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 253 ~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
....++++++ ......+.+.|... ++.+..+.+.|.+.|...++.+
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 73 FPDTKVAVLSAYVDKDLIINSVKAGAVD-YILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHHHTCSC-EEESSCCHHHHHHHHHHHHHC-
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCcce-eEeCCCCHHHHHHHHHHHHhhc
Confidence 2246777664 33455566788875 5667779999999999887654
No 250
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=50.66 E-value=69 Score=27.89 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=14.2
Q ss_pred ecCCCChHHHHHHHHHHHH
Q 022128 279 YPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 279 v~~~~~~~~ll~~i~~~~~ 297 (302)
+.+..+.+++.++|.+.+.
T Consensus 325 ~~~~~d~~~l~~~i~~l~~ 343 (394)
T 3okp_A 325 VVEGSDVDKLSELLIELLD 343 (394)
T ss_dssp ECCTTCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHh
Confidence 3444588999999988765
No 251
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=50.37 E-value=66 Score=22.96 Aligned_cols=112 Identities=7% Similarity=0.073 Sum_probs=66.3
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (302)
Q Consensus 49 ~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS----~~av~~f~~~l~~ 123 (302)
.+++||+.-.... ...+...|++.|+++... .+..+..+.+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLST-FEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-TCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 4678998876543 456778888888865432 233333344422 4688887753 23444 5556665
Q ss_pred cCC-CCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 124 AGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 124 ~~~-~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
... ...+++.++........+.++. |.. ++..+..+.+.|...+...
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE---GAD-DYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH---TCC-EEECSSCCHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh---ChH-HHhhCCCCHHHHHHHHHHH
Confidence 443 4677777766544443333222 664 4667788899998887654
No 252
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=49.96 E-value=68 Score=22.99 Aligned_cols=115 Identities=10% Similarity=0.107 Sum_probs=61.2
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (302)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l 121 (302)
++.+++||+.-... ....+...|++.|+..+ ... .+..+....+.....+|.|+.- ..++.+ +++.+
T Consensus 2 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v----~~~---~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~-~~~~l 73 (129)
T 3h1g_A 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDV----LEA---EHGVEAWEKLDANADTKVLITDWNMPEMNGLD-LVKKV 73 (129)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCCCE----EEE---SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHH-HHHHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHcCCcEE----EEe---CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 34567899887654 34567778899998521 111 1222222333233467877752 334555 45556
Q ss_pred HHcC-CCCceEEEEChh-hHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 122 KEAG-TPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 122 ~~~~-~~~~~i~aVG~~-Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
++.. .++++++++... ......+.++. |.. ++..+..+.+.|.+.+..
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKA---GVN-NYIVKPFTPQVLKEKLEV 123 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHH---TCC-EEEESCCCHHHHHHHHHH
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHc---Ccc-EEEeCCCCHHHHHHHHHH
Confidence 5532 356777665543 33322222211 664 466778888888877654
No 253
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}
Probab=49.94 E-value=38 Score=28.33 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=41.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--fTS~~av~~f~~~l~ 122 (302)
..+.|+++|||-.... ...+++.|.+.|++++.+-. ..+.+.+.+ -....++. +++..+++.+++...
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-------~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDI-------RGEDVVADL--GDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEES-------SCHHHHHHT--CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC-------chHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999986543 56788999999999876532 122232322 11222221 378888888888776
Q ss_pred HcC
Q 022128 123 EAG 125 (302)
Q Consensus 123 ~~~ 125 (302)
+.+
T Consensus 76 ~~g 78 (257)
T 3tl3_A 76 TMG 78 (257)
T ss_dssp HHS
T ss_pred HhC
Confidence 543
No 254
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=49.87 E-value=44 Score=29.03 Aligned_cols=114 Identities=18% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCC-Cc-hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGP-DT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~-~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~ 123 (302)
....|++|.+.--- .+.+.+.+.+.++..+ +..|.+ +. +...+. -+...|+|++|...=+..-++.+-+
T Consensus 137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~V~---E~~p~~g~~p~~~~~~--~lp~~D~viiTgstlvN~Tl~~lL~ 207 (270)
T 3l5o_A 137 NEVKGKKVGVVGHF----PHLESLLEPICDLSIL---EWSPEEGDYPLPASEF--ILPECDYVYITCASVVDKTLPRLLE 207 (270)
T ss_dssp TTTTTSEEEEESCC----TTHHHHHTTTSEEEEE---ESSCCTTCEEGGGHHH--HGGGCSEEEEETHHHHHTCHHHHHH
T ss_pred cccCCCEEEEECCc----hhHHHHHhcCCCEEEE---ECCCCCCCCChhHHHH--hhccCCEEEEEeehhhcCCHHHHHh
Confidence 45568999988643 2445566667665443 434433 21 222222 2577999999999988777776666
Q ss_pred cCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.......++.+||.|- .+-..|.+ |++..-.-..-+.+.+.+.+.
T Consensus 208 ~~~~a~~vvl~GPStp-~~P~lf~~---Gv~~laG~~V~d~~~~~~~i~ 252 (270)
T 3l5o_A 208 LSRNARRITLVGPGTP-LAPVLFEH---GLQELSGFMVKDNARAFRIVA 252 (270)
T ss_dssp HTTTSSEEEEESTTCC-CCGGGGGT---TCSEEEEEEESCHHHHHHHHT
T ss_pred hCCCCCEEEEECCCch-hhHHHHhc---CcCEEEEEEEcCHHHHHHHHh
Confidence 5445567889999873 33344422 665422211235666666665
No 255
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=49.83 E-value=10 Score=31.29 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT 109 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT 109 (302)
.+.|+++|||-.... ...+++.|.+.|++++..---.-....|.+.+.+.++.+++.|.+|..
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~n 66 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVT 66 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEEC
Confidence 467899999986543 567888999999988754322111222334444444444555655543
No 256
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=49.82 E-value=79 Score=26.33 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=45.9
Q ss_pred CCCCCCeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEE--EeChHHHHHHHH
Q 022128 46 ASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWII--ITSPEAGSVFLE 119 (302)
Q Consensus 46 ~~l~g~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~Ii--fTS~~av~~f~~ 119 (302)
..+.|++||||-.. +=...+++.|.+.|++++.+-. .. ...+.+.+.+.... +..++. +++...++.+++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r---~~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDY---HE-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEES---CH-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecC---CH-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 45779999999874 3567899999999998764311 10 11122333332222 222222 378889988888
Q ss_pred HHHHc
Q 022128 120 AWKEA 124 (302)
Q Consensus 120 ~l~~~ 124 (302)
.+.+.
T Consensus 94 ~~~~~ 98 (266)
T 3o38_A 94 QTVEK 98 (266)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76553
No 257
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=49.70 E-value=1.2e+02 Score=26.41 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=74.7
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCce--eccCCC-ccHHHHHHhcccCCC
Q 022128 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (302)
Q Consensus 101 ~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~--~~~p~~-~~~e~L~~~L~~~~~ 176 (302)
.+.+.||-. +..........+.+. +++++..+..+ ..+... . ..+- .+.+.. ..+..+++.+.+.
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~-~~~~~~---~--~~~~~f~~~~~~~~~~~~~~~~l~~~-- 138 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAGA-DTLTNE---Q--CTPYTVHYAYDTMALAKGTGSAVVKQ-- 138 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCCC-GGGGTT---T--CCTTEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCCc-hhhhcc---c--CCCcEEEeeCChHHHHHHHHHHHHHc--
Confidence 578888854 444445555655553 56777776433 222211 0 1111 122322 2345566666654
Q ss_pred CCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcH-HHHHHHHHhh
Q 022128 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSSWVNLI 248 (302)
Q Consensus 177 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s-~v~~~~~~~l 248 (302)
..++|.++..+.. .+.+.+.|++.|..|.....|.... .+. ...+..+ .++|+|++.+.. .+. .+++.+
T Consensus 139 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d~-~~~l~~i~~~~~d~v~~~~~~~~~~-~~~~~~ 215 (375)
T 3i09_A 139 GGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSA-SDF-SSFLLQAQSSKAQILGLANAGGDTV-NAIKAA 215 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SCC-HHHHHHHHHTCCSEEEEECCHHHHH-HHHHHH
T ss_pred CCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC-ccH-HHHHHHHHhCCCCEEEEecCchhHH-HHHHHH
Confidence 3468877755432 3567888999999886655554322 122 2223332 578988766543 566 677766
Q ss_pred hcc
Q 022128 249 SDT 251 (302)
Q Consensus 249 ~~~ 251 (302)
.+.
T Consensus 216 ~~~ 218 (375)
T 3i09_A 216 KEF 218 (375)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 258
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=49.36 E-value=95 Score=26.21 Aligned_cols=15 Identities=13% Similarity=0.018 Sum_probs=9.1
Q ss_pred CCCCEEEEECcHHHH
Q 022128 227 LSIPVVAVASPSAVR 241 (302)
Q Consensus 227 ~~~d~ivftS~s~v~ 241 (302)
.++|.|++.+..+..
T Consensus 61 ~~vDgII~~~~~~~~ 75 (295)
T 3lft_A 61 NGNDLVVGIATPAAQ 75 (295)
T ss_dssp SSCSEEEEESHHHHH
T ss_pred cCCCEEEECCcHHHH
Confidence 367777776654444
No 259
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=49.22 E-value=32 Score=30.04 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=50.8
Q ss_pred CCCeEEEeCCC----CChH----HHHHHHHhCCCcEEEeceEEeeeCCC------chHHHHHHhcCCCccEEEEeCh---
Q 022128 49 SNPKVVVTRER----GKNG----KLIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSP--- 111 (302)
Q Consensus 49 ~g~~IlitR~~----~~~~----~l~~~L~~~G~~v~~~P~~~~~~~~~------~~~l~~~l~~l~~~d~IifTS~--- 111 (302)
..++||+.-.. +.+. .+.+.+++.|+++..+-+.+.- ..+ .+.+.+..+.+...|.|||.||
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlp-l~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLP-LPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCC-CTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCC-CCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc
Confidence 45777766433 2233 3445566779998887766542 211 1234455555677999999996
Q ss_pred ----HHHHHHHHHHHHc-----CCCCceEEEEC
Q 022128 112 ----EAGSVFLEAWKEA-----GTPNVRIGVVG 135 (302)
Q Consensus 112 ----~av~~f~~~l~~~-----~~~~~~i~aVG 135 (302)
..++.|++.+... .+.+.++++++
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ 168 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQ 168 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEE
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEE
Confidence 4677777766432 13455555544
No 260
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=48.64 E-value=35 Score=27.16 Aligned_cols=70 Identities=21% Similarity=0.168 Sum_probs=44.7
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHH--------HHHHHH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~--------f~~~l~ 122 (302)
|+|+|..-.+.-..+.+.|++.|+++..+|. + + .+.++|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~------~--~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR------V--E-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS------G--G-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC------h--H-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 5788887555566788999999998876652 1 1 346789999998744221 122222
Q ss_pred HcCCCCceEEEEChhh
Q 022128 123 EAGTPNVRIGVVGAGT 138 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~T 138 (302)
..+++++.|.-+-
T Consensus 66 ---~~~~PilGIC~G~ 78 (186)
T 2ywj_A 66 ---NSNLPILGTCAGM 78 (186)
T ss_dssp ---TCCCCEEEETHHH
T ss_pred ---hcCCcEEEECHHH
Confidence 2356777666554
No 261
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=48.46 E-value=79 Score=24.59 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=28.0
Q ss_pred cCCCCEEEEECcHH--------HHHHHHHhhhcc---cCCCceEEEEC-------------HHHHHHHHHcCCCe
Q 022128 226 ALSIPVVAVASPSA--------VRSSWVNLISDT---EQWSNSVACIG-------------ETTASAAKRLGLKN 276 (302)
Q Consensus 226 ~~~~d~ivftS~s~--------v~~~~~~~l~~~---~~~~~~i~~IG-------------~~Ta~~l~~~G~~~ 276 (302)
+.+.|.|+|-+|.- ++ .|++.+... ...+.+++++| ....+.|++.|.+.
T Consensus 54 l~~~d~ii~g~pt~g~G~~p~~~~-~f~~~l~~~~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~ 127 (167)
T 1ykg_A 54 IASEKLLIVVTSTQGEGEPPEEAV-ALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGER 127 (167)
T ss_dssp GGGCSEEEEEEECBGGGBCCGGGH-HHHHHHTSTTCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEE
T ss_pred hccCCeEEEEEcccCCCcCChhHH-HHHHHHHhccccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 34678777766543 56 677776531 12234455443 23445566678874
No 262
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=48.38 E-value=6.7 Score=31.99 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=37.2
Q ss_pred HHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeChH-------HHHHHHHHHHHcCCCCceEEEEC
Q 022128 69 LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 69 L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~l~~~d~IifTS~~-------av~~f~~~l~~~~~~~~~i~aVG 135 (302)
|++.|+++..+.+.+... ....+.+......+..+|.|||.||. .++.|++.+....+.+.+++.++
T Consensus 30 l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 30 LARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp HHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred HHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccccccCCCEEEEEE
Confidence 555687777665543210 00112333444455679999999974 55666655433234566666554
No 263
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=48.38 E-value=61 Score=28.29 Aligned_cols=144 Identities=11% Similarity=0.083 Sum_probs=78.0
Q ss_pred CCccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHH--HHhhccCCCCce--eccCCC-ccHHHHHHhcccC
Q 022128 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE--EVIQSSKCSLDV--AFSPSK-ATGKILASELPKN 174 (302)
Q Consensus 101 ~~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~--~~~~~~~~G~~~--~~~p~~-~~~e~L~~~L~~~ 174 (302)
++.+.||-. +..........+.+. +++++..+... ..+. .. +.+. .+.|.. ..+..+++.|.+.
T Consensus 88 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (386)
T 3sg0_A 88 EKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAAA-ILVAPMDE------RRKWVYKVVPNDDIMAEAIGKYIAKT 157 (386)
T ss_dssp SCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCCG-GGTCSCCT------TGGGEEECSCCHHHHHHHHHHHHHHT
T ss_pred cCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCCC-ccccccCC------CCCcEEecCCCcHHHHHHHHHHHHhc
Confidence 468898853 444455556666554 56777776533 2222 11 1111 122322 2345566666554
Q ss_pred CCCCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc-HHHHHHHHH
Q 022128 175 GKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSSWVN 246 (302)
Q Consensus 175 ~~~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~-s~v~~~~~~ 246 (302)
..++|.++..+. ....+.+.|++.|+++.....|.... .+....+..+ .++|+|++.+. ..+. .+++
T Consensus 158 --g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~~~~~~~dav~~~~~~~~a~-~~~~ 232 (386)
T 3sg0_A 158 --GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSD--ASVTGQVLKIIATKPDAVFIASAGTPAV-LPQK 232 (386)
T ss_dssp --TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTC--SCCHHHHHHHHHTCCSEEEEECCSGGGH-HHHH
T ss_pred --CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--CcHHHHHHHHHhcCCCEEEEecCcchHH-HHHH
Confidence 346888775433 23567788899998875444443321 2222222222 57899887775 6666 6777
Q ss_pred hhhcccCCCceEEE
Q 022128 247 LISDTEQWSNSVAC 260 (302)
Q Consensus 247 ~l~~~~~~~~~i~~ 260 (302)
.+.+... ..+++.
T Consensus 233 ~~~~~g~-~~~~~~ 245 (386)
T 3sg0_A 233 ALRERGF-KGAIYQ 245 (386)
T ss_dssp HHHHTTC-CSEEEC
T ss_pred HHHHcCC-CCcEEe
Confidence 7766432 345553
No 264
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=48.33 E-value=66 Score=26.25 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
.++.|++||||-.... ...+++.|.+.|++|+.+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999987643 567888999999987653
No 265
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=48.27 E-value=25 Score=26.86 Aligned_cols=62 Identities=26% Similarity=0.275 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH--------HHHHHHHHHHc--CCCCceEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 132 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a--------v~~f~~~l~~~--~~~~~~i~ 132 (302)
+.+++.|.+.|+++..+.. .+ ...+.++|.|||-+|.= +..|++.+... .+.+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 4455556667888765432 11 12467799999988754 46788877654 45667777
Q ss_pred EEChh
Q 022128 133 VVGAG 137 (302)
Q Consensus 133 aVG~~ 137 (302)
+.|-+
T Consensus 87 vfg~G 91 (147)
T 2hna_A 87 AIGIG 91 (147)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 77743
No 266
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=48.12 E-value=1.3e+02 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=33.1
Q ss_pred cCCCCEEEEECcH---HHHHHHHHhhhcccCCCceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 226 ALSIPVVAVASPS---AVRSSWVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 226 ~~~~d~ivftS~s---~v~~~~~~~l~~~~~~~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
+...|+++++|.. .. .+++.+. .++++++..-. ..+.+. .|..-.+ .+..+.++|.++|.+.+.
T Consensus 323 ~~~adv~v~ps~~e~~~~--~~~Eama----~G~PvI~~~~~~~~e~i~-~~~~g~~-~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 323 YRAADIVAVPSFNESFGL--VAMEAQA----SGTPVIAARVGGLPIAVA-EGETGLL-VDGHSPHAWADALATLLD 390 (438)
T ss_dssp HHHCSEEEECCSCCSSCH--HHHHHHH----TTCCEEEESCTTHHHHSC-BTTTEEE-ESSCCHHHHHHHHHHHHH
T ss_pred HHhCCEEEECccccCCch--HHHHHHH----cCCCEEecCCCChhHHhh-CCCcEEE-CCCCCHHHHHHHHHHHHc
Confidence 3456777777621 01 1122221 25566665322 222222 2333333 344589999999988775
No 267
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=48.05 E-value=15 Score=30.88 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=51.3
Q ss_pred CeEEEeCCC--CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-------------H
Q 022128 51 PKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-------------S 115 (302)
Q Consensus 51 ~~IlitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-------------~ 115 (302)
|+|++.+.. +....+...|++.|+++..+.++.-...++ ++.++|+||++-...- .
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~GGp~~~~~~~~~~~~~~~~ 71 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMGGPQSPSSTKKEFPYYDAQ 71 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECCCSSCTTCCTTTCTTCCHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECCCCCCcccccccCcccchH
Confidence 567777633 345678899999999998887766443332 2457899999853211 1
Q ss_pred HHHHHHHHcCCCCceEEEEChhhHHHHHHHh
Q 022128 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVI 146 (302)
Q Consensus 116 ~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~ 146 (302)
...+.+++.--.+++++.|--+ .+.|-..+
T Consensus 72 ~~~~~i~~~~~~~~PvLGIClG-~QlL~~~~ 101 (236)
T 3l7n_A 72 AEVKLIQKAAKSEKIIVGVCLG-AQLMGVAY 101 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEETHH-HHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEEchH-HHHHHHHh
Confidence 1222222211136788766555 35666655
No 268
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=47.73 E-value=64 Score=27.55 Aligned_cols=127 Identities=12% Similarity=-0.029 Sum_probs=71.6
Q ss_pred ChHH-HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 61 KNGK-LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 61 ~~~~-l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+.. ....+++.|++..+.++ ++. ..+...+-+.+. ..+++.+.+|-|.=.+. ++.+.+. +
T Consensus 15 ~SP~~hn~~~~~~gl~~~y~~~-~~~-~~~l~~~i~~~~-~~~~~G~nVT~P~K~~v-~~~ld~~-------------~- 76 (272)
T 1p77_A 15 KSPLIQNKLAAQTHQTMEYIAK-LGD-LDAFEQQLLAFF-EEGAKGCNITSPFKERA-YQLADEY-------------S- 76 (272)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEE-ECC-TTTHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE-------------C-
T ss_pred cCHHHHHHHHHHCCcCeEEEEE-EcC-HHHHHHHHHHHH-hCCCCEEEECcCCHHHH-HHHHhhc-------------C-
Confidence 3444 34578999999888877 443 223333323332 24789999999966554 3333221 1
Q ss_pred HHHHHHhhccCCCCceec-------cCCCccHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeee
Q 022128 140 SIFEEVIQSSKCSLDVAF-------SPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 140 ~~l~~~~~~~~~G~~~~~-------~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (302)
...+.. | +++... .....+..++...|.+.. .++++++++.+.+....+...|.+.|.+| .+|
T Consensus 77 ~~A~~i-g----avNti~~~~~g~l~g~NTD~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v---~v~ 148 (272)
T 1p77_A 77 QRAKLA-E----ACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNI---VLA 148 (272)
T ss_dssp HHHHHH-T----CCSEEEECTTSCEEEECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEE---EEE
T ss_pred HHHHHh-C----CceEEEEccCCEEEEecCCHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEE---EEE
Confidence 111222 0 222211 112345778877776532 25788998877665667788888888544 455
Q ss_pred eee
Q 022128 211 TTE 213 (302)
Q Consensus 211 ~~~ 213 (302)
.+.
T Consensus 149 ~R~ 151 (272)
T 1p77_A 149 NRT 151 (272)
T ss_dssp ESS
T ss_pred ECC
Confidence 443
No 269
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=47.50 E-value=9.6 Score=32.18 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=21.1
Q ss_pred CCeEEEeCCCC--C--h----HHHHHHHHhCCCcEEEeceEEe
Q 022128 50 NPKVVVTRERG--K--N----GKLIKALAKHRIDCLELPLIQH 84 (302)
Q Consensus 50 g~~IlitR~~~--~--~----~~l~~~L~~~G~~v~~~P~~~~ 84 (302)
+|+||+.-... . + +.+.+.+++.|.++..+-+++.
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 46776653222 1 2 3355666777999888877653
No 270
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=47.45 E-value=65 Score=28.20 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHHH
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~~ 116 (302)
.++|+|.--..-...+++.|.+.|. ++.+.. +..... .+.+.|.+. .+.+.|.++.+.++-...
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a--~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA--NVRGARAVIVDLESDSET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHT--CSTTEEEEEECCSSHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhc--ChhhccEEEEcCCccHHH
Confidence 4567777654445566667766666 543321 111111 122233321 467899999988765443
Q ss_pred HHHH--HHHcCCCCceEEEE--ChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhc
Q 022128 117 FLEA--WKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (302)
Q Consensus 117 f~~~--l~~~~~~~~~i~aV--G~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L 171 (302)
..-. +++.+ ++.++++. .+...+.+++. |.+..+.|....+..|++.+
T Consensus 192 ~~~~~~ar~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~~ 243 (336)
T 1lnq_A 192 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 243 (336)
T ss_dssp HHHHHHHHTTC-TTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHHH
Confidence 3332 23322 45666655 55667788887 98766666655555555544
No 271
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=47.39 E-value=36 Score=29.76 Aligned_cols=161 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCccEEEE-eChHHHHHHHH--HHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCC
Q 022128 101 TIFDWIII-TSPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK 177 (302)
Q Consensus 101 ~~~d~Iif-TS~~av~~f~~--~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~ 177 (302)
.+.+.||- .+......... .+.+. +++++..+......-..- .+-.........+..+++.|.....
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~~~~~~~~------~~f~~~~~~~~~~~~~~~~l~~~g~- 141 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGASSMTTDP------LVFPIKASYQQEIDKMITALVTIGV- 141 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCCGGGGSCT------TEECCSCCHHHHHHHHHHHHHHTTC-
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCcHhhccCC------cEEEeCCChHHHHHHHHHHHHHcCC-
Q ss_pred CCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEE-ECcHHHHHHHHHhhhcc
Q 022128 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV-ASPSAVRSSWVNLISDT 251 (302)
Q Consensus 178 ~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivf-tS~s~v~~~~~~~l~~~ 251 (302)
++|.++.++.. ...+.+.|++.|..+.....|.....+.......-...++|+|++ .+...+. .+++.+.+.
T Consensus 142 -~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~-~~~~~~~~~ 219 (364)
T 3lop_A 142 -TRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAA-QFVRQYRAR 219 (364)
T ss_dssp -CCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHH-HHHHHHHHT
T ss_pred -ceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHH-HHHHHHHHc
Q ss_pred cCCCceEEEECHHHHHHHHHcC
Q 022128 252 EQWSNSVACIGETTASAAKRLG 273 (302)
Q Consensus 252 ~~~~~~i~~IG~~Ta~~l~~~G 273 (302)
......+..-+-.....++..|
T Consensus 220 g~~~~~i~~~~~~~~~~~~~~g 241 (364)
T 3lop_A 220 GGEAQLLGLSSIDPGILQKVAG 241 (364)
T ss_dssp TCCCEEEECTTSCHHHHHHHHC
T ss_pred CCCCeEEEeccCChHHHHHHhC
No 272
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=47.28 E-value=29 Score=26.85 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=51.4
Q ss_pred CceEEEEChhhHHHHHH-HhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCC-cchhhHHHHHHhCCCeeE
Q 022128 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-KASNEIEEGLSNRGFEVV 205 (302)
Q Consensus 128 ~~~i~aVG~~Ta~~l~~-~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~-~~~~~L~~~L~~~G~~v~ 205 (302)
+.+++|-| .|++.|++ . |+++..+- ++. ++++.+.+.+++..++
T Consensus 31 Gf~l~AT~-gTa~~L~e~~------Gl~v~~v~-------------------------k~~~eG~p~I~d~I~~geId-- 76 (134)
T 2xw6_A 31 RFPLVATG-TTGRRIEEAT------GLTVEKLL-------------------------SGPLGGDQQMGARVAEGRIL-- 76 (134)
T ss_dssp TSCEEECH-HHHHHHHHHH------CCCCEECS-------------------------CGGGTHHHHHHHHHHTTCEE--
T ss_pred CCEEEEcc-HHHHHHHHhh------CceEEEEE-------------------------ecCCCCcchHHHHHHCCCcc--
Confidence 45677764 58888888 6 88664431 112 3566677777665433
Q ss_pred EEeeeeeecC-----CCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhc
Q 022128 206 RLNTYTTEPV-----HHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 206 ~~~vY~~~~~-----~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
+.+..+.|. ..+...+.+.....++-++|+..+++ +++..+..
T Consensus 77 -lVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~-a~v~al~~ 124 (134)
T 2xw6_A 77 -AVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAE-ALIPWLQS 124 (134)
T ss_dssp -EEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHH-HHHHHHHT
T ss_pred -EEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHH-HHHHHHHH
Confidence 223333321 12223333333456778999999999 99888754
No 273
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=47.04 E-value=1.3e+02 Score=25.52 Aligned_cols=145 Identities=9% Similarity=0.075 Sum_probs=78.0
Q ss_pred CCccEEEEeC-hHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCc--eeccCCC-ccHHHHHHhcccCCC
Q 022128 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD--VAFSPSK-ATGKILASELPKNGK 176 (302)
Q Consensus 101 ~~~d~IifTS-~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~--~~~~p~~-~~~e~L~~~L~~~~~ 176 (302)
.+.+.||... ........+.+.+. +++++.++... ..+... +.+ ..+.|.. ..+..+++.|.+..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~- 136 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATN-PELTQR------GYQHIMRTAGLDSSQGPTAAKYILETV- 136 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCC-GGGGSS------CCSSEEECSCCGGGHHHHHHHHHHHTT-
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCC-hHHhcC------CCCcEEeccCChHHHHHHHHHHHHHhc-
Confidence 5788888753 33444455555553 56777776533 122221 111 1123332 33455666664432
Q ss_pred CCCEEEEeCCCcc-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC-cHHHHHHHHHhh
Q 022128 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSSWVNLI 248 (302)
Q Consensus 177 ~~~~vL~~rg~~~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS-~s~v~~~~~~~l 248 (302)
..++|.++.++.. .+.+.+.|++.|+.+.....|... ..+....+..+ .++|+|++.+ ...+. .+++.+
T Consensus 137 g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~-~~~~~~ 213 (346)
T 1usg_A 137 KPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMG-QMLRQA 213 (346)
T ss_dssp CCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHH-HHHHHH
T ss_pred CCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHH-HHHHHH
Confidence 2367888876532 235677888999887654444321 12222223332 5789999888 46666 677777
Q ss_pred hcccCCCceEEE
Q 022128 249 SDTEQWSNSVAC 260 (302)
Q Consensus 249 ~~~~~~~~~i~~ 260 (302)
.+... ..+++.
T Consensus 214 ~~~g~-~~~~~~ 224 (346)
T 1usg_A 214 RSVGL-KTQFMG 224 (346)
T ss_dssp HHTTC-CCEEEE
T ss_pred HHcCC-CCeEEe
Confidence 65432 345554
No 274
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=47.03 E-value=71 Score=23.28 Aligned_cols=110 Identities=11% Similarity=0.107 Sum_probs=60.9
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----hHHHHHHHHHH
Q 022128 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAW 121 (302)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS-----~~av~~f~~~l 121 (302)
..+++||+.-... ....+...|++.|+++..+ .+..+....+..-..+|.|++-- .++.+ +++.+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l 73 (140)
T 3h5i_A 3 LKDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ-TALAI 73 (140)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHH-HHHHH
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHH-HHHHH
Confidence 4578899987654 3456788899999765421 23333334443325689888742 44554 45556
Q ss_pred HHcCCCCceEEEEChhhH-HHHHHHhhccCCCCceeccCCCccHHHHHHhcc
Q 022128 122 KEAGTPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (302)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta-~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~ 172 (302)
.+. ++++++++..... ....+.++ .|.. ++..+..+.+.|...+.
T Consensus 74 ~~~--~~~~ii~ls~~~~~~~~~~~~~---~g~~-~~l~KP~~~~~l~~~i~ 119 (140)
T 3h5i_A 74 QQI--SELPVVFLTAHTEPAVVEKIRS---VTAY-GYVMKSATEQVLITIVE 119 (140)
T ss_dssp HHH--CCCCEEEEESSSSCCCCGGGGG---SCEE-EEEETTCCHHHHHHHHH
T ss_pred HhC--CCCCEEEEECCCCHHHHHHHHh---CCCc-EEEeCCCCHHHHHHHHH
Confidence 554 4667766654332 22222211 1553 45667777877776664
No 275
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=46.95 E-value=33 Score=27.23 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeChHHHHHHHHHHHHcCCCCceEEEE
Q 022128 59 RGKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (302)
Q Consensus 59 ~~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~--l-~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aV 134 (302)
.+...++.+.|++.| +.+..+. ..+...+...+.. + ..+|.++..+....+.|...+...+.+.-.+++|
T Consensus 107 ~~~~~~~l~~l~~~g~~~~~i~t------~~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKYKLVVAT------KGDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp CTTHHHHHHHHHHHCCCEEEEEE------ESCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CccHHHHHHHHHhCCCeEEEEEe------CCchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence 445678888888888 7765432 1122222333322 3 3578888777666777777777777777789999
Q ss_pred Chhh---HHHHHHHhhccCCCCceeccCC
Q 022128 135 GAGT---ASIFEEVIQSSKCSLDVAFSPS 160 (302)
Q Consensus 135 G~~T---a~~l~~~~~~~~~G~~~~~~p~ 160 (302)
|..- -+.++.. |+.+..++.
T Consensus 181 GD~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 181 GNSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp ESCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCCcHHHhHHHHHC------CCeEEEecC
Confidence 9884 4677887 998877654
No 276
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=46.72 E-value=38 Score=30.41 Aligned_cols=79 Identities=15% Similarity=0.058 Sum_probs=45.7
Q ss_pred CCeEEEe-CCCCCh-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-------HHHH
Q 022128 50 NPKVVVT-RERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (302)
Q Consensus 50 g~~Ilit-R~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-------av~~ 116 (302)
+++|++. .+...+ +.+.+.+++.|+++..+. +.. .+...+ ...+.++|.|||.||. .+..
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~---~~~-~~~~~~---~~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMW---CKA-CHHSQI---MSEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEE---TTT-SCHHHH---HHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEE---CCC-CCHHHH---HHHHHHCCEEEEECCccCCCchHHHHH
Confidence 4565555 443332 334456666776554332 221 122223 2344679999999963 5778
Q ss_pred HHHHHHHcCCCCceEEEEC
Q 022128 117 FLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 117 f~~~l~~~~~~~~~i~aVG 135 (302)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8887766556677777666
No 277
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=46.63 E-value=92 Score=27.56 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=43.4
Q ss_pred CCCEEEEEC---------cHHHHHHHHHhhhcccCCCceEEEECHHHHHHHHH-cCCCeEE----ecC-CCChHHHHHHH
Q 022128 228 SIPVVAVAS---------PSAVRSSWVNLISDTEQWSNSVACIGETTASAAKR-LGLKNVY----YPT-HPGLEGWVDSI 292 (302)
Q Consensus 228 ~~d~ivftS---------~s~v~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~-~G~~~~~----v~~-~~~~~~ll~~i 292 (302)
+..+|+||| .+.++ ...+.+.+. .+..+++||.+....+++ .|...+. +.+ .|+.+...+..
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k-~~~~~i~~~--~g~~l~~VG~Kg~~~~~~~~~~~i~~~~~~~~~~~p~~~~a~~i~ 180 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAK-AVRRHLNDQ--PNADIVTIGDKIKMQLLRTHPNNIKLSINGIGKDAPTFQESALIA 180 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHH-HHHHSSSSC--TTCEEEEESHHHHHHHHTTSTTTEEEEEESCTTSCCCHHHHHHHH
T ss_pred ceEEEEEeCCCcccchhhHHHHH-HHHHHHHhc--CCCEEEEechHHHHHHHHhcCCCeEEEecccCCCCCCHHHHHHHH
Confidence 446899999 77788 666655441 122399999999999998 5887532 124 67877555444
Q ss_pred HHHH
Q 022128 293 LEAL 296 (302)
Q Consensus 293 ~~~~ 296 (302)
.+.+
T Consensus 181 ~~i~ 184 (311)
T 2xok_G 181 DKLL 184 (311)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 278
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=46.54 E-value=32 Score=27.68 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=33.4
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
|+|+|..-.+.-....+.|++.|+++..++. . + .+.++|.||++-..
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~d~iil~GG~ 48 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR------P--E-------QLNEVDGLILPGGE 48 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS------G--G-------GGGGCSEEEECCSC
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC------h--H-------HHhhCCEEEECCCC
Confidence 6788886544556677999999998776643 1 1 23568999998764
No 279
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=46.53 E-value=11 Score=30.71 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=33.7
Q ss_pred hCCCeeEEEeeeeeecCC----------------CCcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 199 ~~G~~v~~~~vY~~~~~~----------------~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
+.|.+|+.+.+|+....+ ....+..+.+...|.|+|.+| ..++ .|++.+-
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK-~~iD~v~ 100 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILK-GFIDRVF 100 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHHS
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHH-HHHHHHc
Confidence 468899999888764311 111334444567899999875 6888 8888773
No 280
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=46.22 E-value=25 Score=28.13 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=36.9
Q ss_pred hHHHHHHhCC--CeeEEEeeeeeecCCCC---------------c---------HHHHHHcCCCCEEEEECc-------H
Q 022128 192 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 238 (302)
Q Consensus 192 ~L~~~L~~~G--~~v~~~~vY~~~~~~~~---------------~---------~~~~~~~~~~d~ivftS~-------s 238 (302)
.+.+.|++.| .+|+.+.+|+....... . ....+.+...|.|+|.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4556677765 88888888875322111 0 112233467899999995 6
Q ss_pred HHHHHHHHhhh
Q 022128 239 AVRSSWVNLIS 249 (302)
Q Consensus 239 ~v~~~~~~~l~ 249 (302)
.++ .|++.+.
T Consensus 104 ~lK-~~iD~~~ 113 (201)
T 1t5b_A 104 QLK-NYFDLIA 113 (201)
T ss_dssp HHH-HHHHHHC
T ss_pred HHH-HHHHHhe
Confidence 788 8888875
No 281
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=46.13 E-value=87 Score=23.10 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS----~~av~~f~~~ 120 (302)
....+++||+.-.... ...+...|+..|.. +.+....+..+..+.+ .-..+|.|++-- .++.+ +++.
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~------~~v~~~~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~ 87 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDV------ESVLQAKNGQEAIQLL-EKESVDIAILDVEMPVKTGLE-VLEW 87 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTE------EEEEEESSHHHHHHHH-TTSCCSEEEECSSCSSSCHHH-HHHH
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCc------EEEEEECCHHHHHHHh-hccCCCEEEEeCCCCCCcHHH-HHHH
Confidence 4445678999876543 45567778777621 1222223344444555 335688888742 24444 4555
Q ss_pred HHHcCCCCceEEEECh-hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 121 WKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 121 l~~~~~~~~~i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
+.+.. ++++++++.. ...+...+.++. |.. ++..+..+.+.|...+....
T Consensus 88 l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 88 IRSEK-LETKVVVVTTFKRAGYFERAVKA---GVD-AYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHHTT-CSCEEEEEESCCCHHHHHHHHHT---TCS-EEEETTSCHHHHHHHHHHHH
T ss_pred HHHhC-CCCeEEEEeCCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHHH
Confidence 66543 5677766544 333333333222 664 46677788888887776543
No 282
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=46.08 E-value=1.5e+02 Score=25.65 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=53.7
Q ss_pred CeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 51 PKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 51 ~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
++|++..... +..-+.+.|+++|. +.....+. ...+. +.+.+.|..-.+.|+|+..+-..+....+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~ 222 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVY--GEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQ 222 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEE--CTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEee--CCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHH
Confidence 4666664332 23457778888887 22222221 11122 23556665556789999998888888888
Q ss_pred HHHHcCCC---CceEEEEChhh
Q 022128 120 AWKEAGTP---NVRIGVVGAGT 138 (302)
Q Consensus 120 ~l~~~~~~---~~~i~aVG~~T 138 (302)
++.+.|+. ++.++..+...
T Consensus 223 al~~~G~~vP~di~vvg~d~~~ 244 (350)
T 3h75_A 223 AARELGRKPGTDLLFSGVNSSP 244 (350)
T ss_dssp HHHHTTCCBTTTBEEEEESCCH
T ss_pred HHHHcCCCCCCCeEEEecCCCH
Confidence 99998864 78888887644
No 283
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=46.03 E-value=27 Score=33.43 Aligned_cols=140 Identities=11% Similarity=0.006 Sum_probs=78.6
Q ss_pred ChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc-CC
Q 022128 61 KNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GT 126 (302)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~-~~ 126 (302)
+..++.+.|++.|+++..+|=+. +......+++ .++.+.+.-+..++.......+.|++. +.
T Consensus 236 D~~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~ggtt~~ei----~~~~~A~~niv~~~~~~~~~A~~Le~~~Gi 311 (523)
T 3u7q_B 236 NFRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGGTTQEEM----KDAPNALNTVLLQPWHLEKTKKFVEGTWKH 311 (523)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCCBCHHHH----HHGGGSSEEEESSGGGCHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHcCCeEEEecCchhcccccccccccccCCCCCHHHH----HHhhcCcEEEEEccchHHHHHHHHHHHhCC
Confidence 34789999999999999886321 1111122333 355667777777776555566666553 44
Q ss_pred CCceE-EEECh-hhHHHHHHHhhccCCCCceeccCCCcc--HHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhC
Q 022128 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNR 200 (302)
Q Consensus 127 ~~~~i-~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~--~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~ 200 (302)
+-+.+ .-+|. .|.+.|++....- |..+ |.... -..+.+.+.+.. ..|+|+.+..+..-.--|...|.+.
T Consensus 312 P~i~~~~PiG~~~T~~~l~~la~~~--g~~~---~~~i~~er~r~~~~l~d~~~~l~GKrvaI~gd~~~~~~la~fL~el 386 (523)
T 3u7q_B 312 EVPKLNIPMGLDWTDEFLMKVSEIS--GQPI---PASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLEL 386 (523)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHH--CCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred CeeecCCcCCHHHHHHHHHHHHHHH--CCCh---hHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHc
Confidence 43332 23565 5776666542100 4432 21110 112333332221 1578999885444445688899999
Q ss_pred CCeeEEEee
Q 022128 201 GFEVVRLNT 209 (302)
Q Consensus 201 G~~v~~~~v 209 (302)
|++|..+.+
T Consensus 387 Gm~vv~v~~ 395 (523)
T 3u7q_B 387 GCEPVHILC 395 (523)
T ss_dssp TCEEEEEEE
T ss_pred CCEEEEEEe
Confidence 998865543
No 284
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=45.95 E-value=52 Score=32.32 Aligned_cols=96 Identities=13% Similarity=0.077 Sum_probs=61.6
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHH----HHHHhhhcccCCCceEEEEC-
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRS----SWVNLISDTEQWSNSVACIG- 262 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~----~~~~~l~~~~~~~~~i~~IG- 262 (302)
.+.....|+..|++|.....+.+ +++.+.. .+.|+|++.|..+..- .+.+.+++... .++++-|
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t-------ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~--~~V~vgG~ 597 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT-------AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA--KALYLSGA 597 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH-------HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC--SEEEEESC
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC-------HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC--CeEEEeCC
Confidence 35777899999999988766644 2233322 4789999988776430 23444444332 3455555
Q ss_pred HHH----HHHHHHcCCCeEEecCCCChHHHHHHHHHHH
Q 022128 263 ETT----ASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 263 ~~T----a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
|.+ .+.+++ |+..+ +....+...+++.+.+.+
T Consensus 598 P~~d~~~~~~~~~-G~D~~-~~~g~~~~~~l~~l~~~l 633 (637)
T 1req_B 598 FKEFGDDAAEAEK-LIDGR-LFMGMDVVDTLSSTLDIL 633 (637)
T ss_dssp GGGGGGGHHHHHH-HCCCE-ECTTCCHHHHHHHHHHHT
T ss_pred CCccchhhHHHHh-ccceE-ecCCcCHHHHHHHHHHHh
Confidence 344 467888 99874 566677777777776655
No 285
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=45.94 E-value=22 Score=31.30 Aligned_cols=75 Identities=16% Similarity=0.118 Sum_probs=48.9
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---H----HHHHHHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---a----v~~f~~~l 121 (302)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.+....+...|++++++ + ++.+.+.+
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 172 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVA 172 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHH
Confidence 47789999886433347778888999999888632 1113566787777433467889998764 2 34445545
Q ss_pred HHc
Q 022128 122 KEA 124 (302)
Q Consensus 122 ~~~ 124 (302)
.+.
T Consensus 173 ~~~ 175 (386)
T 2dr1_A 173 KEH 175 (386)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 286
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=45.91 E-value=36 Score=28.80 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=42.6
Q ss_pred CCCCEEEEECcH-HH-------HHHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 227 LSIPVVAVASPS-AV-------RSSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 227 ~~~d~ivftS~s-~v-------~~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
..+|+|++...+ +. + .+.+.+.+. .+++++.+.+.+..+++..|.+++-+-.. ....+-+.+.+++.+
T Consensus 65 ag~d~i~~aCtsas~~~G~~~~~-~~~~~l~~~--~~iPv~~~~~A~~~al~~~g~~rvglltp-y~~~~~~~~~~~l~~ 140 (240)
T 3ixl_A 65 QGAAVVSLMCTSLSFYRGAAFNA-ALTVAMREA--TGLPCTTMSTAVLNGLRALGVRRVALATA-YIDDVNERLAAFLAE 140 (240)
T ss_dssp TTEEEEEECCHHHHHTTCHHHHH-HHHHHHHHH--HSSCEEEHHHHHHHHHHHTTCSEEEEEES-SCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCcHHHHhcccchHH-HHHHHHHhc--cCCCEECHHHHHHHHHHHhCCCEEEEEeC-ChHHHHHHHHHHHHH
Confidence 477888875322 32 3 344555442 25778888888888888888877644432 334455566666665
Q ss_pred cC
Q 022128 299 HG 300 (302)
Q Consensus 299 ~~ 300 (302)
++
T Consensus 141 ~G 142 (240)
T 3ixl_A 141 ES 142 (240)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 287
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=45.83 E-value=81 Score=22.67 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC-----cHHHHHHHHHhhh
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-----PSAVRSSWVNLIS 249 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS-----~s~v~~~~~~~l~ 249 (302)
..+||++..+.. +..+...|+..|+.|.. ++. ...+..+.+ ..+|+|++-- ....+ +++.+.
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~--~~~------~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~--~~~~l~ 78 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLG--VFD------NGEEAVRCAPDLRPDIALVDIMLCGALDGVE--TAARLA 78 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEE--EES------SHHHHHHHHHHHCCSEEEEESSCCSSSCHHH--HHHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEE--EEC------CHHHHHHHHHhCCCCEEEEecCCCCCCCHHH--HHHHHH
Confidence 468998877654 56788889888876521 111 112222222 3688888751 23333 444444
Q ss_pred cccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 250 DTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 250 ~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
.. ...++++++ ......+.+.|... ++.+..+.+.|.+.|...++.
T Consensus 79 ~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~ 128 (140)
T 3cg0_A 79 AG--CNLPIIFITSSQDVETFQRAKRVNPFG-YLAKPVAADTLHRSIEMAIHK 128 (140)
T ss_dssp HH--SCCCEEEEECCCCHHHHHHHHTTCCSE-EEEESCCHHHHHHHHHHHHHH
T ss_pred hC--CCCCEEEEecCCCHHHHHHHHhcCCCE-EEeCCCCHHHHHHHHHHHHhc
Confidence 33 245666653 33344556678875 556777899999999887753
No 288
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=45.39 E-value=82 Score=27.10 Aligned_cols=57 Identities=7% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCCCEEE-EECcHHHHHHHHHhhhcccCCCceEEE----ECHHHHHHHHHcCC-CeEEecCCCChHH
Q 022128 227 LSIPVVA-VASPSAVRSSWVNLISDTEQWSNSVAC----IGETTASAAKRLGL-KNVYYPTHPGLEG 287 (302)
Q Consensus 227 ~~~d~iv-ftS~s~v~~~~~~~l~~~~~~~~~i~~----IG~~Ta~~l~~~G~-~~~~v~~~~~~~~ 287 (302)
..+|+|+ ||+|.++. .....+.+. ++++++ +.+.-.+.+.+..- ..++++.+.+...
T Consensus 71 ~~~DvVIDft~p~~~~-~~~~~a~~~---G~~vVigTtG~~~e~~~~L~~~a~~~~vv~a~N~siGv 133 (273)
T 1dih_A 71 DDFDVFIDFTRPEGTL-NHLAFCRQH---GKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGV 133 (273)
T ss_dssp TSCSEEEECSCHHHHH-HHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHTTTSCEEECSCCCHHH
T ss_pred cCCCEEEEcCChHHHH-HHHHHHHhC---CCCEEEECCCCCHHHHHHHHHhcCCCCEEEEecCcHHH
Confidence 4789999 99999988 666655443 345544 34544556665422 2355666666643
No 289
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=45.31 E-value=1.3e+02 Score=29.78 Aligned_cols=116 Identities=20% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCEEEEeCCCc-ch----hhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHH--------H
Q 022128 177 KKCTVLYPASAK-AS----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAV--------R 241 (302)
Q Consensus 177 ~~~~vL~~rg~~-~~----~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v--------~ 241 (302)
.++||+++-+++ .. ..+.+.|++.|+.|..+..-.-.- ....+... ..+|+|++..+..- .
T Consensus 536 ~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~G----vD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d 611 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASG----VDQTYSAADATAFDAVVVAEGAERVFSGKGAMS 611 (688)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTT----CCEETTTCCGGGCSEEEECTTCCTTTSTTTTCC
T ss_pred cCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCC----cccCcccCChhcCcEEEECCCcccccccccchh
Confidence 678999998876 22 456799999999987765532210 11011111 36899999766311 0
Q ss_pred -----HHHHHhhhcccCCCceEEEECHHHHHHHHHcCCCe----EEecCCCChHHHHHHHHHHHHccC
Q 022128 242 -----SSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN----VYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 242 -----~~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~----~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
....+++.+.....+.|.+|+.. ...|.+.|+.. +++ .+..+.++...+.+..|+
T Consensus 612 ~Lr~~~~a~~fV~e~~~hgKpIAAIchg-p~lL~~AGI~~~~~g~~~---~~~~~~~~~~~~~~~~~r 675 (688)
T 3ej6_A 612 PLFPAGRPSQILTDGYRWGKPVAAVGSA-KKALQSIGVEEKEAGVYA---GAQDEVIKGVEEGLKVFK 675 (688)
T ss_dssp TTSCTTHHHHHHHHHHHTTCCEEEEGGG-HHHHHHTTCCSSSTTEEE---ECHHHHHHHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHHcCCCCCCCeEEe---cCcHHHHHHHHHHHHhcC
Confidence 01222222211234566677643 36677778742 232 234567777777777775
No 290
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=45.20 E-value=73 Score=27.69 Aligned_cols=87 Identities=11% Similarity=0.014 Sum_probs=53.3
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (302)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Iif-TS~~av~~f~~~l~ 122 (302)
..++|.+..+.. ..+.+.+.|+++|+++.....+... ..+.......+.. .+.|.|++ .+......+++++.
T Consensus 150 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~ 227 (375)
T 4evq_A 150 GLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYA 227 (375)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHH
T ss_pred CCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 456777665433 2355778899999987543333211 1244333333322 35788888 77777777888888
Q ss_pred HcCCCCceEEEEChhh
Q 022128 123 EAGTPNVRIGVVGAGT 138 (302)
Q Consensus 123 ~~~~~~~~i~aVG~~T 138 (302)
+.++. ++++..|..+
T Consensus 228 ~~g~~-vp~~~~~~~~ 242 (375)
T 4evq_A 228 AANLG-IPLWGPGFLT 242 (375)
T ss_dssp HTTCC-CCEEEEGGGT
T ss_pred HcCCC-ceEEecCcCC
Confidence 88875 7777776433
No 291
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=45.08 E-value=58 Score=27.85 Aligned_cols=67 Identities=13% Similarity=0.027 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChH--HHHHHHHHHHHcCCCCceEEEEChhh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~--av~~f~~~l~~~~~~~~~i~aVG~~T 138 (302)
.+.+.++++|++++.+. ...+.+...+.++.+ .++|+||+.+.. +....++.+.+ .++++++++...
T Consensus 24 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 94 (330)
T 3uug_A 24 NIVKQLQEAGYKTDLQY-----ADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGE---QGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHH---TTCEEEEESSCC
T ss_pred HHHHHHHHcCCEEEEee-----CCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHH---CCCCEEEECCCC
Confidence 35567788899887554 122322212222221 469999998765 44555555555 368899998754
No 292
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=43.94 E-value=87 Score=22.50 Aligned_cols=107 Identities=12% Similarity=0.028 Sum_probs=65.1
Q ss_pred CEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~~~ 251 (302)
.+||++..+.. +..+.+.|+..|+.|.... ...+..+.+ ..+|+|++--. ...+ +++.+++.
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~---------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~--~~~~l~~~ 76 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAG---------DGEEGERLFGLHAPDVIITDIRMPKLGGLE--MLDRIKAG 76 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEES---------SHHHHHHHHHHHCCSEEEECSSCSSSCHHH--HHHHHHHT
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC---------CHHHHHHHHhccCCCEEEEeCCCCCCCHHH--HHHHHHhc
Confidence 57888877654 5678888888776543221 112222222 36888777532 2333 44444443
Q ss_pred cCCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 252 EQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 252 ~~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
. ...++++++. .....+.+.|... ++.+..+.+.|.+.|.+.++.
T Consensus 77 ~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 77 G-AKPYVIVISAFSEMKYFIKAIELGVHL-FLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp T-CCCEEEECCCCCCHHHHHHHHHHCCSE-ECCSSCCHHHHHHHHHHHHHH
T ss_pred C-CCCcEEEEecCcChHHHHHHHhCCcce-eEcCCCCHHHHHHHHHHHHHH
Confidence 2 3567777653 3455566789875 567778999999999888753
No 293
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.84 E-value=30 Score=29.12 Aligned_cols=82 Identities=13% Similarity=0.228 Sum_probs=51.6
Q ss_pred eEEEeCCCC-------ChHHHHHHHHhC-CCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 52 KVVVTRERG-------KNGKLIKALAKH-RIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 52 ~IlitR~~~-------~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
+|++..... +..-+.+.|+++ |+++... + ....+. ..+.+.+..-.+.|+|+.++-..+..+.+
T Consensus 137 ~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 212 (293)
T 3l6u_A 137 RIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDS--V--SGNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLE 212 (293)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEE--E--ECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEeee--c--cCCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHH
Confidence 676664322 224466677777 7665432 1 111121 23555665546789999999888888889
Q ss_pred HHHHcCCCCceEEEEChh
Q 022128 120 AWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~ 137 (302)
++.+.|+.++.++..+..
T Consensus 213 al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 213 ALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp HHHHTTCCCCEEEEEECC
T ss_pred HHHhCCCCCeEEEEecCC
Confidence 999988776666666544
No 294
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=43.74 E-value=15 Score=31.84 Aligned_cols=69 Identities=16% Similarity=0.224 Sum_probs=43.6
Q ss_pred EEEEeCCCcc--------hhhHHHHHHhCCCeeEEEeeeeeecCC---------------------------------CC
Q 022128 180 TVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVH---------------------------------HV 218 (302)
Q Consensus 180 ~vL~~rg~~~--------~~~L~~~L~~~G~~v~~~~vY~~~~~~---------------------------------~~ 218 (302)
+||++.|... .+.+.+.|++.|.+|+.+.+|+....+ ..
T Consensus 4 kiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd 83 (273)
T 1d4a_A 4 RALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPD 83 (273)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHH
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHH
Confidence 5666654322 134556678889999999999764210 00
Q ss_pred cHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 219 DQTVLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 219 ~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
.....+.+...|.|||.+| ..++ .|++.+.
T Consensus 84 ~~~~~~~l~~AD~IV~~~P~y~~s~Pa~LK-~~iDrv~ 120 (273)
T 1d4a_A 84 IVAEQKKLEAADLVIFQFPLQWFGVPAILK-GWFERVF 120 (273)
T ss_dssp HHHHHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHHS
T ss_pred HHHHHHHHHhCCEEEEECchhhccCCHHHH-HHHHHHH
Confidence 1112223467899999886 7889 8988764
No 295
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=43.51 E-value=62 Score=28.95 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=54.6
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--hHHHHHHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS--~~av~~f~~~l 121 (302)
..++|.+..+... .+.+.+.+++.|+++...-.+... ..|...+...+.. .+.|.|++.+ +.....|++++
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~-~~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP-VSDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS-CSCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC-CccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 4577887765432 345667778889988754433321 1355444444423 4689999874 45677788888
Q ss_pred HHcCCCCceEEEE-ChhhHHHHH
Q 022128 122 KEAGTPNVRIGVV-GAGTASIFE 143 (302)
Q Consensus 122 ~~~~~~~~~i~aV-G~~Ta~~l~ 143 (302)
.+.++ +.+++.. |..+.+.++
T Consensus 241 ~~~g~-~~~~~~~~~~~~~~~~~ 262 (419)
T 3h5l_A 241 MTDPT-NSLVYLQYGASLAAFRD 262 (419)
T ss_dssp TTSCC-SCEEEECSGGGSHHHHH
T ss_pred HHcCC-CceEEecCCCCcHHHHH
Confidence 88777 4444433 444434433
No 296
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=43.39 E-value=34 Score=28.29 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=47.0
Q ss_pred CCCCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 47 SNSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 47 ~l~g~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
.+.|++|++.-... .-....+.|++.|+++..+.+.+ .+.+.+.+.+ .+.|.|+|+-.+... +.+
T Consensus 24 ~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l---~~ad~I~l~GG~~~~-l~~ 95 (206)
T 3l4e_A 24 NLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKL---RKNDFIYVTGGNTFF-LLQ 95 (206)
T ss_dssp CCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHH---HHSSEEEECCSCHHH-HHH
T ss_pred HcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHH---HhCCEEEECCCCHHH-HHH
Confidence 55678888664211 23567889999999877665443 2333343444 468999999988774 667
Q ss_pred HHHHcCC
Q 022128 120 AWKEAGT 126 (302)
Q Consensus 120 ~l~~~~~ 126 (302)
.|.+.++
T Consensus 96 ~L~~~gl 102 (206)
T 3l4e_A 96 ELKRTGA 102 (206)
T ss_dssp HHHHHTH
T ss_pred HHHHCCh
Confidence 7776553
No 297
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=43.29 E-value=1e+02 Score=26.12 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
.++.|++||||-.... ...+++.|.+.|++|+.+
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 5688999999986543 567889999999987653
No 298
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=43.28 E-value=14 Score=29.33 Aligned_cols=70 Identities=19% Similarity=0.320 Sum_probs=34.0
Q ss_pred CeEEEeCCC----CChHHHHHHHHhCCCcEEEeceEEeeeCC-------------CchHHHHHHhcCCCccEEEEeCh--
Q 022128 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSP-- 111 (302)
Q Consensus 51 ~~IlitR~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-------------~~~~l~~~l~~l~~~d~IifTS~-- 111 (302)
|+||+.-.. +....+++.+.+ |+++..+.+.+....+ ..+.+.....++..+|.|||.||
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~y 82 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPIY 82 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEECB
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCcc
Confidence 456654322 446667777754 5655444443321100 01123333445577899999986
Q ss_pred -----HHHHHHHHHH
Q 022128 112 -----EAGSVFLEAW 121 (302)
Q Consensus 112 -----~av~~f~~~l 121 (302)
..++.|++.+
T Consensus 83 ~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 83 WFGMSGTLKLFIDRW 97 (184)
T ss_dssp TTBCCHHHHHHHHTH
T ss_pred ccCCcHHHHHHHHHh
Confidence 3455555543
No 299
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}
Probab=43.19 E-value=1.7e+02 Score=25.51 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=87.9
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHcCCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~~~~~ 128 (302)
.|+|+++.+- .+...+.|++.|+++...+ ..+.+++.+ .+.++|.++..+...+ ..+++. .++
T Consensus 3 ~~~il~~~~~--~~~~~~~l~~~~~~~~~~~------~~~~~~~~~---~~~~~d~~i~~~~~~~~~~~l~~-----~~~ 66 (307)
T 1wwk_A 3 RMKVLVAAPL--HEKAIQVLKDAGLEVIYEE------YPDEDRLVE---LVKDVEAIIVRSKPKVTRRVIES-----APK 66 (307)
T ss_dssp -CEEEECSCC--CHHHHHHHHHTTCEEEECS------SCCHHHHHH---HSTTCSEEEESSCSCBCHHHHTT-----CTT
T ss_pred ceEEEEeCCC--CHHHHHHHHhCCeEEEeCC------CCCHHHHHH---HhcCCEEEEEcCCCCCCHHHHhh-----CCC
Confidence 3689998754 3455677888777664311 112233333 4678999886543211 112221 245
Q ss_pred ceEEE-EChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-----c---c------------cC--------C
Q 022128 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-----L---P------------KN--------G 175 (302)
Q Consensus 129 ~~i~a-VG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-----L---~------------~~--------~ 175 (302)
+|+++ .|.++ .+++.+. |+.+...|. .+++.+++. | . .| .
T Consensus 67 Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 139 (307)
T 1wwk_A 67 LKVIARAGVGLDNIDVEAAKEK------GIEVVNAPA-ASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 139 (307)
T ss_dssp CCEEEESSSCCTTBCHHHHHHH------TCEEECCGG-GGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCC
T ss_pred CeEEEECCccccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcc
Confidence 66553 33222 3567777 998866654 233332221 1 0 01 1
Q ss_pred CCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC-------cHHHHHHcCCCCEEEEECcHH
Q 022128 176 KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 176 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~ivftS~s~ 239 (302)
..+++|.++.-..-...+.+.|+..|.+|. +|.+.+.... ....-+.+...|+|++.-|.+
T Consensus 140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~ 207 (307)
T 1wwk_A 140 LEGKTIGIIGFGRIGYQVAKIANALGMNIL---LYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLV 207 (307)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCS
T ss_pred cCCceEEEEccCHHHHHHHHHHHHCCCEEE---EECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCC
Confidence 257889999776667788999999998764 5554332100 000111123568877776643
No 300
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=43.19 E-value=39 Score=30.29 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=60.4
Q ss_pred CCEEEEeCCCc-c-----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc-------HHHHHHH
Q 022128 178 KCTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSSW 244 (302)
Q Consensus 178 ~~~vL~~rg~~-~-----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~-------s~v~~~~ 244 (302)
..+++++.+.. + .+.+.+.|.+.|++++.+.+.+ .....+...+...|.|+|.|| ..++ .|
T Consensus 256 ~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k-~~ 329 (404)
T 2ohh_A 256 DERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHE-----DDRSEIVKDILESGAIALGAPTIYDEPYPSVG-DL 329 (404)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCEETTEECTHHH-HH
T ss_pred CCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECccccccchHHHH-HH
Confidence 35665554432 2 2356677777787765554432 122333444568999999998 4788 88
Q ss_pred HHhhhcccC---CCceEEEEC---------HHHHHHHHHcCCCeEE---ecCCCChHHHHHHHHHH
Q 022128 245 VNLISDTEQ---WSNSVACIG---------ETTASAAKRLGLKNVY---YPTHPGLEGWVDSILEA 295 (302)
Q Consensus 245 ~~~l~~~~~---~~~~i~~IG---------~~Ta~~l~~~G~~~~~---v~~~~~~~~ll~~i~~~ 295 (302)
++.+..... .+.+++++| ....+.++.+|+..+. +...++.+ .++.+.++
T Consensus 330 ld~l~~~~~~~l~~k~~~~~~~~g~~~~a~~~l~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 394 (404)
T 2ohh_A 330 LMYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVACEEEVYYVPTGD-ELDACFEA 394 (404)
T ss_dssp HHHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEEEEEEESSCCHH-HHHHHHHH
T ss_pred HHHhhhccccccCCCEEEEEEecCCCChhHHHHHHHHHHCCCEEEeEEEEeeCCCHH-HHHHHHHH
Confidence 887653211 233443331 2345566677887532 23445443 33444443
No 301
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=42.96 E-value=1.2e+02 Score=24.78 Aligned_cols=62 Identities=8% Similarity=0.104 Sum_probs=33.6
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHH---HHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEE
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~---L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~ 207 (302)
-.+++++. |+.+.+.....+.+. +++.+..... .-+++...........+.|.+.|+.|..+
T Consensus 24 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dgiIi~~~~~~~~~~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 24 LEQGARAR------GYQLLIASSDDQPDSERQLQQLFRARRC--DALFVASCLPPEDDSYRELQDKGLPVIAI 88 (272)
T ss_dssp HHHHHHHT------TCEEEEEECTTCHHHHHHHHHHHHHTTC--SEEEECCCCCSSCCHHHHHHHTTCCEEEE
T ss_pred HHHHHHHC------CCEEEEEeCCCCHHHHHHHHHHHHHcCC--CEEEEecCccccHHHHHHHHHcCCCEEEE
Confidence 44666777 888777655544443 3333333221 22444433323355667788888876544
No 302
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=42.94 E-value=41 Score=24.85 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=29.9
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-------H--HHHHHHHhhhc
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------A--VRSSWVNLISD 250 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-------~--v~~~~~~~l~~ 250 (302)
.+.+.|.+.|++|+.+.+-+ .... .+...|.|+|.||. . ++ .|++.+..
T Consensus 19 ~i~~~l~~~g~~v~~~~~~~-----~~~~----~l~~~d~vi~g~p~y~~~~~~~~~~~-~fl~~l~~ 76 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRFED-----TNVD----DVASKDVILLGCPAMGSEELEDSVVE-PFFTDLAP 76 (137)
T ss_dssp HHHHHHHHTTCCEEEEETTS-----CCHH----HHHTCSEEEEECCCBTTTBCCHHHHH-HHHHHHGG
T ss_pred HHHHHHHhCCCeEEEEEccc-----CCHH----HHhcCCEEEEEccccCCCCCCHHHHH-HHHHHhhh
Confidence 45566777787765443321 1111 24578999998876 2 88 88887653
No 303
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=42.78 E-value=1.5e+02 Score=24.77 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=44.0
Q ss_pred CeEEEeCCCCC-hHHHHHHHHhC-CCcEEEec------------eEEeeeC--CCchHHHHHHhcCCCccEEEEeCh---
Q 022128 51 PKVVVTRERGK-NGKLIKALAKH-RIDCLELP------------LIQHAQG--PDTDRLSSVLNADTIFDWIIITSP--- 111 (302)
Q Consensus 51 ~~IlitR~~~~-~~~l~~~L~~~-G~~v~~~P------------~~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~--- 111 (302)
|+||||-..+. ...+.+.|.+. |.+|..+- -+++... .|.+.+.+.+ .+.|.||....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~---~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAF---KGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHT---TTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHH---hCCCEEEEeCCCCc
Confidence 56888886553 44566777776 88877651 1223322 2334455544 57899998865
Q ss_pred ------HHHHHHHHHHHHcCC
Q 022128 112 ------EAGSVFLEAWKEAGT 126 (302)
Q Consensus 112 ------~av~~f~~~l~~~~~ 126 (302)
.+.+.+++.+.+.+.
T Consensus 78 ~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHHcCC
Confidence 345566666666553
No 304
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=42.70 E-value=90 Score=22.29 Aligned_cols=109 Identities=13% Similarity=0.117 Sum_probs=64.6
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH---cCCCCEEEEE----CcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ---ALSIPVVAVA----SPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~ivft----S~s~v~~~~~~~l~~ 250 (302)
.+||++-.+. .+..+.+.|+..|+.. ++.. . ...+.+.. ...+|+|++- ..+..+ +++.+++
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~----v~~~---~-~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~--~~~~lr~ 75 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYED----VLEA---E-HGVEAWEKLDANADTKVLITDWNMPEMNGLD--LVKKVRS 75 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCC----EEEE---S-SHHHHHHHHHHCTTCCEEEECSCCSSSCHHH--HHHHHHT
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcE----EEEe---C-CHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 5788887654 4677888899888742 1111 1 11222222 1357877652 223333 4444443
Q ss_pred cc-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 251 TE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 251 ~~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
.. ....+++.++ +.....+.+.|... ++.+..+.+.|.+.|...+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 76 DSRFKEIPIIMITAEGGKAEVITALKAGVNN-YIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp STTCTTCCEEEEESCCSHHHHHHHHHHTCCE-EEESCCCHHHHHHHHHHHHCC
T ss_pred cCCCCCCeEEEEeCCCChHHHHHHHHcCccE-EEeCCCCHHHHHHHHHHHhcc
Confidence 22 2346676664 44455666789875 677888999999999888754
No 305
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=42.68 E-value=1.2e+02 Score=26.33 Aligned_cols=59 Identities=14% Similarity=0.061 Sum_probs=30.8
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc---CCCCEEEEECc
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASP 237 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~ivftS~ 237 (302)
+|.+|+++...-....+...++..|+++..+++-.. -..+.+.+.+.+ .+..+|+++++
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~l~~~~~~~~v~~~~~ 155 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG--KAVKPEDLDDALRKNPDVEAVTITYN 155 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT--CCCCHHHHHHHHHHCTTCCEEEEESE
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCCC--CCCCHHHHHHHHhcCCCCcEEEEEee
Confidence 456777776655443355666677777666554210 011222222222 35667777765
No 306
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=42.63 E-value=82 Score=26.69 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.1
Q ss_pred CCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEe
Q 022128 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 48 l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (302)
+.||++|||-... =....++.|.+.|++|+..
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 4699999998654 3567899999999999864
No 307
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=42.62 E-value=35 Score=25.28 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 022128 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (302)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l~~~L~~~G~~v~ 77 (302)
.++.|++|++|-.-. ..+++.+.++.+|+.|.
T Consensus 31 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 31 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 579999999998653 47889999999999875
No 308
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=42.41 E-value=55 Score=27.60 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=51.7
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeCC
Q 022128 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPAS 186 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~rg 186 (302)
.|+.+++..-+.+...++.+.--+..|..-....... .+++.++ .+..++-+.+.|..... ++...+++.+
T Consensus 53 i~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~------~~D~Ivi-aGmGg~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 53 VVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEAD------NIDTITI-CGMGGRLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp SSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG------CCCEEEE-EEECHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccc------ccCEEEE-eCCchHHHHHHHHHHHHHhCcCCEEEEEC
Confidence 4677777777777766665433344555432111111 2333222 22333333333332111 2345778888
Q ss_pred CcchhhHHHHHHhCCCeeEEEe
Q 022128 187 AKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 187 ~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
..+.+.+.+.|.+.|+.+..-.
T Consensus 126 ~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 126 NNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp SSCHHHHHHHHHHTTEEEEEEE
T ss_pred CCChHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999876543
No 309
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=42.39 E-value=1.7e+02 Score=25.48 Aligned_cols=188 Identities=10% Similarity=-0.073 Sum_probs=0.0
Q ss_pred CccEEEEe-ChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CC
Q 022128 102 IFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KK 178 (302)
Q Consensus 102 ~~d~IifT-S~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~ 178 (302)
+.+.||-. +..........+.+. +++++..+..+...-.+. +.+-.+. -..+.......+.++.. ..
T Consensus 73 ~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~l~~~~------~~~~~f~-~~~~~~~~~~~~~~~l~~~g~ 142 (387)
T 3i45_A 73 GVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTDALTWEK------GNRYTYR-LRPSTYMQAAMLAAEAAKLPI 142 (387)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCGGGTTTT------CCTTEEE-CSCCHHHHHHHHHHHHTTSSC
T ss_pred CCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCchhhhhcc------CCCCEEE-eCCChHHHHHHHHHHHHHcCC
Q ss_pred CEEEEeCCCc-----chhhHHHHHHhC--CCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEE-CcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAK-----ASNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA-SPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~-----~~~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivft-S~s~v~~~~~~~l~~ 250 (302)
++|.++..+. ....+.+.|++. |+++.....|.....+....-..-...++|+|++. +...+. .+++.+.+
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~-~~~~~~~~ 221 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLP-KFVREGRV 221 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHH-HHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHH-HHHHHHHH
Q ss_pred cc-CCCceEEEECHHHHHHHHHcC---CCeEEec-------CCCChHHHHHHHHHHHHccC
Q 022128 251 TE-QWSNSVACIGETTASAAKRLG---LKNVYYP-------THPGLEGWVDSILEALREHG 300 (302)
Q Consensus 251 ~~-~~~~~i~~IG~~Ta~~l~~~G---~~~~~v~-------~~~~~~~ll~~i~~~~~~~~ 300 (302)
.. ..+..++...-.....++.+| ...+++. +.|....+++..++.....+
T Consensus 222 ~g~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p 282 (387)
T 3i45_A 222 RGLFAGRQVVSMLTGEPEYLNPLKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKEDP 282 (387)
T ss_dssp HTSSTTCEEEEEEEESHHHHGGGGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSSCC
T ss_pred cCCCCCCeEEeecCCChHHHHHhhhhccCceEEecccccCCCCHHHHHHHHHHHHHHCCCC
No 310
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=42.34 E-value=27 Score=31.45 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHHHcCC---CCceEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIG 132 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-------~av~~f~~~l~~~~~---~~~~i~ 132 (302)
+.+++.+++.|+++..+.+-+. +...+ ..++.++|.|||-|| ..++.|++.+...+. .+.+++
T Consensus 275 ~~i~~~l~~~g~~v~~~~~~~~----~~~~~---~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~ 347 (404)
T 2ohh_A 275 HAIAEGAMSEGVDVRVYCLHED----DRSEI---VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKAL 347 (404)
T ss_dssp HHHHHHHHTTTCEEEEEETTTS----CHHHH---HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEE
T ss_pred HHHHHHHHhCCCeEEEEECCCC----CHHHH---HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEE
Confidence 3344556666776654432211 12223 224567999999998 468888887765443 566666
Q ss_pred EEC
Q 022128 133 VVG 135 (302)
Q Consensus 133 aVG 135 (302)
++|
T Consensus 348 ~~~ 350 (404)
T 2ohh_A 348 VFG 350 (404)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 311
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=42.00 E-value=1e+02 Score=22.76 Aligned_cols=112 Identities=11% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----hHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS----~~av~~f~~~ 120 (302)
....+++|||.-.... ...+...|++.|+++..+ .+..+....+.. ..+|.|++-- .++.+ +++.
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~-~~~~ 79 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPT-LLAR 79 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHH
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHH-HHHH
Confidence 3455778999886543 455777888888654421 233334444433 4689888742 34554 4455
Q ss_pred HHHcCCCCceEEEEChh-hHHHHHHHhhccCCC-CceeccCCCccHHHHHHhcc
Q 022128 121 WKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCS-LDVAFSPSKATGKILASELP 172 (302)
Q Consensus 121 l~~~~~~~~~i~aVG~~-Ta~~l~~~~~~~~~G-~~~~~~p~~~~~e~L~~~L~ 172 (302)
+.+.. ++++++++... ......+.++. | .. ++..+..+.+.|...+.
T Consensus 80 l~~~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~l~~~i~ 128 (153)
T 3hv2_A 80 IHQQY-PSTTRILLTGDPDLKLIAKAINE---GEIY-RYLSKPWDDQELLLALR 128 (153)
T ss_dssp HHHHC-TTSEEEEECCCCCHHHHHHHHHT---TCCS-EEECSSCCHHHHHHHHH
T ss_pred HHhHC-CCCeEEEEECCCCHHHHHHHHhC---CCcc-eEEeCCCCHHHHHHHHH
Confidence 55543 46777666543 33333333221 5 54 46677788888877664
No 312
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=41.77 E-value=1.5e+02 Score=24.72 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=33.1
Q ss_pred hhHHHHHHHhhccCCCCceeccCCC--ccHHHHHHhcccCCCCCCEEEEeCCC--cchhhHHHHHHhCCCeeEEEe
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKNGKKKCTVLYPASA--KASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~--~~~e~L~~~L~~~~~~~~~vL~~rg~--~~~~~L~~~L~~~G~~v~~~~ 208 (302)
+..+++++. |+.+.+.... .+.+...+.+......+-.-+++.+. .......+.+.+.|+.|..+.
T Consensus 24 gi~~~a~~~------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 24 GAKKAAEEL------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHH------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHh------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEc
Confidence 345667777 8888765433 24443333332211111122333332 222556777888888775443
No 313
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=41.62 E-value=64 Score=27.41 Aligned_cols=48 Identities=10% Similarity=0.151 Sum_probs=29.7
Q ss_pred CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
...+...|.+.|+..|++|+.+..-+. ....+.. .+.+.++|+|||..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~~--~~~fp~~-~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHTV--QIAFPES-IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHHH--HHCCCCS-HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEecccc--hhhCCcC-hhHHhcCCEEEEeC
Confidence 334667899999999998877643110 0111110 12356899999986
No 314
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=41.61 E-value=92 Score=22.07 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=61.8
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHHcC
Q 022128 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (302)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~~~ 125 (302)
++||+.-... ....+...|++.|+++... .+..+..+.+ .-..+|.|+.- ..++.+ +.+.+.+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~-~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFT-VLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHH-HHHHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHH-HHHHHHhcc
Confidence 5788887654 3455777888899876432 2333333444 23568887763 334555 445555432
Q ss_pred -CCCceEEEECh-hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 126 -TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 126 -~~~~~i~aVG~-~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
.++++++++.. ...+...+.+.. |.. ++..+..+.+.|...+..
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSL---GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred cccCCCEEEEecCCchHHHHHHHhc---Chh-hhccCCCCHHHHHHHHHH
Confidence 35677765543 333333322211 664 466777888888776643
No 315
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=41.55 E-value=1.5e+02 Score=24.68 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
.+.|++||||-.... ...+++.|.+.|++|+.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999986653 467888898999988754
No 316
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=41.40 E-value=82 Score=27.16 Aligned_cols=85 Identities=12% Similarity=-0.077 Sum_probs=47.5
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-c
Q 022128 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-F 103 (302)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~ 103 (302)
..+-.++-++..-+ ..|.||.+|||-... =....++.|.+.|++|+..-. +.+.+++..+.++. .
T Consensus 11 ~~~~~~n~~~~~Ms------~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r-------~~~~l~~~~~~~g~~~ 77 (273)
T 4fgs_A 11 VDLGTENLYFQSMT------QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGR-------RKDVLDAAIAEIGGGA 77 (273)
T ss_dssp --------------------CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES-------CHHHHHHHHHHHCTTC
T ss_pred CCccccccchhhhc------chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEEC-------CHHHHHHHHHHcCCCe
Confidence 33444444554433 568999999998654 356789999999999875421 23445555444432 2
Q ss_pred cEEE--EeChHHHHHHHHHHHH
Q 022128 104 DWII--ITSPEAGSVFLEAWKE 123 (302)
Q Consensus 104 d~Ii--fTS~~av~~f~~~l~~ 123 (302)
-.+. +++...++.+++...+
T Consensus 78 ~~~~~Dv~~~~~v~~~~~~~~~ 99 (273)
T 4fgs_A 78 VGIQADSANLAELDRLYEKVKA 99 (273)
T ss_dssp EEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHH
Confidence 1221 4788999988887654
No 317
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=41.38 E-value=46 Score=27.15 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=32.7
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.+...++|+|..-...-..+.+.|++.|+++..++. .+ .+.++|.||++-..
T Consensus 16 ~~~~~~~I~ii~~~~~~~~~~~~l~~~g~~~~~~~~--------~~-------~l~~~d~iil~GG~ 67 (208)
T 2iss_D 16 PRGSHMKIGVLGVQGDVREHVEALHKLGVETLIVKL--------PE-------QLDMVDGLILPGGE 67 (208)
T ss_dssp ----CCEEEEECSSSCHHHHHHHHHHTTCEEEEECS--------GG-------GGGGCSEEEECSSC
T ss_pred CCCCCcEEEEEECCCchHHHHHHHHHCCCEEEEeCC--------hH-------HHhhCCEEEECCCc
Confidence 344567899987533345567889999988776541 11 23468999998653
No 318
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=41.31 E-value=94 Score=26.64 Aligned_cols=82 Identities=13% Similarity=-0.040 Sum_probs=48.4
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-hHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWK 122 (302)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS-~~av~~f~~~l~ 122 (302)
..++|.+..+.. ..+.+.+.|+++|+++.....+... ..+.......+.. .+.|.|++.+ ......+++++.
T Consensus 134 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 211 (362)
T 3snr_A 134 NVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLVA-ANPDAILVGASGTAAALPQTTLR 211 (362)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHHH-HCCSEEEEECCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 346777664332 2345777889999987643333221 1233333333322 4578988887 666677888888
Q ss_pred HcCCCCceEEE
Q 022128 123 EAGTPNVRIGV 133 (302)
Q Consensus 123 ~~~~~~~~i~a 133 (302)
+.++. ++++.
T Consensus 212 ~~g~~-~p~i~ 221 (362)
T 3snr_A 212 ERGYN-GLIYQ 221 (362)
T ss_dssp HTTCC-SEEEE
T ss_pred HcCCC-ccEEe
Confidence 88874 34443
No 319
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=41.23 E-value=1.1e+02 Score=23.47 Aligned_cols=37 Identities=5% Similarity=-0.061 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceecc
Q 022128 112 EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (302)
Q Consensus 112 ~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~ 158 (302)
..+-.+.+.+.+. +.++++-| +|++.|++. |+++..+
T Consensus 37 ~~l~~~a~~l~~l---Gf~i~AT~-GTa~~L~~~------Gi~v~~v 73 (143)
T 2yvq_A 37 PRFLGVAEQLHNE---GFKLFATE-ATSDWLNAN------NVPATPV 73 (143)
T ss_dssp HHHHHHHHHHHTT---TCEEEEEH-HHHHHHHHT------TCCCEEE
T ss_pred HHHHHHHHHHHHC---CCEEEECc-hHHHHHHHc------CCeEEEE
Confidence 3455566666554 56899987 789999998 9987655
No 320
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=41.01 E-value=92 Score=27.27 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+|++....-....+...++..|+++..+++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 140 (393)
T 1vjo_A 108 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISK 140 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEEcCChhHHHHHHHHHHcCCceEEEec
Confidence 445666665544333345555666666655443
No 321
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=40.72 E-value=93 Score=21.87 Aligned_cols=111 Identities=12% Similarity=0.097 Sum_probs=63.4
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~~ 251 (302)
.+||++..+. .+..+...|+..|+.|.... ...+..+.+ ..+|.|+.-- ....+ +++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~---------~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~--~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAE---------DYDSAVNQLNEPWPDLILLAWMLPGGSGIQ--FIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEC---------SHHHHHTTCSSSCCSEEEEESEETTEEHHH--HHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeC---------CHHHHHHHHhccCCCEEEEecCCCCCCHHH--HHHHHHhC
Confidence 4688876654 35678888988887653211 112222222 3578777532 23333 44445442
Q ss_pred c-CCCceEEEECHHHH-H---HHHHcCCCeEEecCCCChHHHHHHHHHHHHccCC
Q 022128 252 E-QWSNSVACIGETTA-S---AAKRLGLKNVYYPTHPGLEGWVDSILEALREHGH 301 (302)
Q Consensus 252 ~-~~~~~i~~IG~~Ta-~---~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~~ 301 (302)
. ....+++.++.... . .+.+.|... ++.+..+.+.+.+.|...++...+
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~-~l~Kp~~~~~l~~~i~~~~~~~~~ 125 (127)
T 2jba_A 72 SMTRDIPVVMLTARGEEEDRVRGLETGADD-CITKPFSPKELVARIKAVMRRISP 125 (127)
T ss_dssp TTTTTSCEEEEEETTHHHHHHTTCCCSCSE-EEEESCCHHHHHHHHHHHHHCCCC
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHHHhcccC
Confidence 2 13466666643322 2 222356654 567778999999999988876544
No 322
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=40.48 E-value=1.1e+02 Score=26.54 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=49.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeee--CCCchHHHHHHhcCCCccEEEEeCh----------HHHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ--GPDTDRLSSVLNADTIFDWIIITSP----------EAGSV 116 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~--~~~~~~l~~~l~~l~~~d~IifTS~----------~av~~ 116 (302)
.|.+|++..+.- ..+...++..|+++..+|+-.-.. ..|.+.+++.+.+ .+...|+++++ .-++.
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~i~~p~nptG~~~~~~~l~~ 184 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT-PSVRMMVFCNPHNPIGYAWSEEEVKR 184 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS-TTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc-cCceEEEEECCCCCCCcccCHHHHHH
Confidence 577899988864 346778888999999999852111 1356778887732 46788888887 34555
Q ss_pred HHHHHHHc
Q 022128 117 FLEAWKEA 124 (302)
Q Consensus 117 f~~~l~~~ 124 (302)
+.+.+.++
T Consensus 185 i~~~~~~~ 192 (391)
T 3dzz_A 185 IAELCAKH 192 (391)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 55555554
No 323
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=40.31 E-value=1.5e+02 Score=25.61 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+.+.+++.|+++..+|. ........+.+.+ .-+++|..+..+...+....+.. ++++++.....
T Consensus 35 l~~~~~~~G~~v~~~~~---~~~g~~~~~~~al-~~G~~D~~~~~~~~~~~~~~~g~------~~~~v~~~~~~------ 98 (348)
T 3uif_A 35 FPEELRKQGIKVEWVPA---AMASVGPVINEGF-ASGKIDFGIYGDLPPIILNASKP------TVQLVAPWGTT------ 98 (348)
T ss_dssp HHHHHHHTTEEEEEEEE---CTTCHHHHHHHHH-HTTCCCEEEEESHHHHHHHHHSC------CEEEEEECCCC------
T ss_pred HHHHHHhcCCeEEEEec---ccCCCcHHHHHHH-HcCCCCEEecCcHHHHHHHhCCC------CEEEEEeccCC------
Q ss_pred HhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHH
Q 022128 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224 (302)
Q Consensus 145 ~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~ 224 (302)
+-...+++....-..+ +.| +|++|.+..|......+...|++.|.+...+..+.. ...+...
T Consensus 99 -------~~~~lvv~~~s~i~s~-~DL-----kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-----~~~~~~~ 160 (348)
T 3uif_A 99 -------SNSYLVVPKNSTAKSI-KDL-----KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-----NPQVGAA 160 (348)
T ss_dssp -------CCCEEEEETTCCCCSG-GGG-----TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-----CHHHHHH
T ss_pred -------CceEEEEECCCCCCCH-HHc-----CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-----CHHHHHH
Q ss_pred Hc--CCCCEEEEECc
Q 022128 225 QA--LSIPVVAVASP 237 (302)
Q Consensus 225 ~~--~~~d~ivftS~ 237 (302)
.+ +.+|+++...+
T Consensus 161 al~~G~vDa~~~~~~ 175 (348)
T 3uif_A 161 ALASGTVDGFFSLFD 175 (348)
T ss_dssp HHHHTSSSEEEESTT
T ss_pred HHHcCCCCEEEechH
No 324
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=40.25 E-value=1.1e+02 Score=25.46 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=26.9
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
..+.|+++|||-.... ...+++.|.+.|++|+.+
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999986543 567889999999988754
No 325
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=40.14 E-value=31 Score=28.12 Aligned_cols=46 Identities=20% Similarity=0.044 Sum_probs=30.7
Q ss_pred HHHHHhcccCCCCCCEEEEe--CCCcchhhHHHHHHhCCCeeEEEeee
Q 022128 165 KILASELPKNGKKKCTVLYP--ASAKASNEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 165 e~L~~~L~~~~~~~~~vL~~--rg~~~~~~L~~~L~~~G~~v~~~~vY 210 (302)
+.+++.+.+...+|+++++. .+......+.+.|++.|+.+..+..+
T Consensus 159 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 159 VKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEec
Confidence 44555555555567777664 34445678889999999988776553
No 326
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=40.13 E-value=18 Score=30.45 Aligned_cols=57 Identities=19% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCeEEEeCCCCC--------h----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 50 NPKVVVTRERGK--------N----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 50 g~~IlitR~~~~--------~----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
+++||+.-.... + +.+.+.+++.|.++..+-+.+ ..|. .+..+.+..+|.|||.+|.
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~---~~Dv---~~~~~~l~~aD~iv~~~P~ 93 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ---GYDI---ESEIENYLWADTIIYQMPA 93 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG---CCCH---HHHHHHHHHCSEEEEEEEC
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC---ccCH---HHHHHHHHhCCEEEEECCh
Confidence 567776653332 2 234455667799888665543 2233 3333445678999999874
No 327
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=40.13 E-value=31 Score=26.94 Aligned_cols=121 Identities=5% Similarity=-0.016 Sum_probs=58.8
Q ss_pred HHHHhcccCCCCCCEEEEeCCCcchhhHHHHHH--hCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-HHHH
Q 022128 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLS--NRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-AVRS 242 (302)
Q Consensus 166 ~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~--~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-~v~~ 242 (302)
.+++.+... ++-++++..+....+.+.+.++ ..|..- .+..... . ..+++...+...|+++++|.. ..-.
T Consensus 40 ~li~a~~~l--~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~-~v~~~g~--~--~~~e~~~~~~~adi~v~ps~~e~~~~ 112 (177)
T 2f9f_A 40 LQLEVFKKL--QDEKLYIVGWFSKGDHAERYARKIMKIAPD-NVKFLGS--V--SEEELIDLYSRCKGLLCTAKDEDFGL 112 (177)
T ss_dssp HHHHHHHHC--TTSCEEEEBCCCTTSTHHHHHHHHHHHSCT-TEEEEES--C--CHHHHHHHHHHCSEEEECCSSCCSCH
T ss_pred HHHHHHHhC--CCcEEEEEecCccHHHHHHHHHhhhcccCC-cEEEeCC--C--CHHHHHHHHHhCCEEEeCCCcCCCCh
Confidence 344444433 2356666665444556666665 433210 0111111 1 112233334567888886631 1100
Q ss_pred HHHHhhhcccCCCceEEEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 243 SWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 243 ~~~~~l~~~~~~~~~i~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.+++.+. .++++++........+-+.|....++ ..+.+++.++|.+.+...
T Consensus 113 ~~~Eama----~G~PvI~~~~~~~~e~i~~~~~g~~~--~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 113 TPIEAMA----SGKPVIAVNEGGFKETVINEKTGYLV--NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp HHHHHHH----TTCCEEEESSHHHHHHCCBTTTEEEE--CSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHH----cCCcEEEeCCCCHHHHhcCCCccEEe--CCCHHHHHHHHHHHHhCH
Confidence 1223332 25677765432222222224444444 568999999999988654
No 328
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=40.11 E-value=22 Score=30.31 Aligned_cols=65 Identities=12% Similarity=0.107 Sum_probs=35.7
Q ss_pred CCCCCeEEEeCCC----CChHH----HHHHHHhCCCcEEEeceEEeeeCCC-----chHHHHHHhcCCCccEEEEeChH
Q 022128 47 SNSNPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQHAQGPD-----TDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 47 ~l~g~~IlitR~~----~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~-----~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
+...++||+.-.. +.+.. +.+.+++.|+++..+.+.+. +..+ .+.+.+..+.+...|.|||.||.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~-pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGL-PLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTC-CCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcC-CCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 3445677765433 22333 44455667998887776553 2111 12234444445667888887763
No 329
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=40.04 E-value=58 Score=25.68 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC---CccEEEEeC---------hHHHHHHHHHHHHcC
Q 022128 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---IFDWIIITS---------PEAGSVFLEAWKEAG 125 (302)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~---~~d~IifTS---------~~av~~f~~~l~~~~ 125 (302)
+.+...++.+.|++.|+.+..+.= .+......+...++.++ .+|.++... +-.-+.|...+.+.+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~Tn---~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 111 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAILSN---TATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQ 111 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEEEC---CSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHT
T ss_pred eCcCHHHHHHHHHHCCCEEEEEEC---CCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcC
Confidence 445678899999999976653321 11101133444444432 356655443 224566777777777
Q ss_pred CCCceEEEEChh-h--HHHHHHHhhccCCCCceeccCCC
Q 022128 126 TPNVRIGVVGAG-T--ASIFEEVIQSSKCSLDVAFSPSK 161 (302)
Q Consensus 126 ~~~~~i~aVG~~-T--a~~l~~~~~~~~~G~~~~~~p~~ 161 (302)
.+.-.++.||.. . ..+.++. |+....+...
T Consensus 112 ~~~~~~l~VGD~~~~Di~~A~~a------G~~~i~v~~~ 144 (189)
T 3ib6_A 112 IDKTEAVMVGNTFESDIIGANRA------GIHAIWLQNP 144 (189)
T ss_dssp CCGGGEEEEESBTTTTHHHHHHT------TCEEEEECCT
T ss_pred CCcccEEEECCCcHHHHHHHHHC------CCeEEEECCc
Confidence 777789999987 3 3556666 9888776543
No 330
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=39.77 E-value=54 Score=29.45 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=28.1
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
++++|+++.+..-...+...+++.|++|..+..+.
T Consensus 11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~ 45 (377)
T 3orq_A 11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSE 45 (377)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 57899999887767778899999999887665543
No 331
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=39.69 E-value=1.1e+02 Score=22.42 Aligned_cols=116 Identities=15% Similarity=0.173 Sum_probs=61.7
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~ 120 (302)
....+++|||.-.... ...+...|++.|+++..+ .+..+..+.+. -..+|.|+.- ..++.+ +++.
T Consensus 10 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~-~~~~ 79 (143)
T 3m6m_D 10 ARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLD-MLKQ 79 (143)
T ss_dssp -----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHH-HSCCSEEEEESCCSSSCHHH-HHHH
T ss_pred cccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHH-HHHH
Confidence 3456789999876543 455777888888765431 23333334442 2568988874 334555 3444
Q ss_pred HHH---cCCCCceEEEEC-hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 121 WKE---AGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 121 l~~---~~~~~~~i~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
+++ .+....+++++. ....+...+.++. |.. ++..+..+.+.|.+.+....
T Consensus 80 lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 80 LRVMQASGMRYTPVVVLSADVTPEAIRACEQA---GAR-AFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHHTTCCCCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHHC
T ss_pred HHhchhccCCCCeEEEEeCCCCHHHHHHHHHc---Chh-heeeCCCCHHHHHHHHHHHH
Confidence 442 233456665554 3344443333211 664 46677888999888876543
No 332
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.59 E-value=37 Score=28.55 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEC
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG 135 (302)
.-+.+.|+++|..+....++... .+. +.+.+.+..-.+.|+|+.++-..+..+.+++.+.|+ .++.++..+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 147 KGFIETCHKNGIKISENHIIAAE--NSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHTTCBCCGGGEEECC--SSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCChhheeccC--CCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 44667788888765432222211 121 234555544456899998888887778888888875 477777776
No 333
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=39.46 E-value=31 Score=29.01 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCC--C--chHHHHHHhcCCC--ccEEEEeChHHHHHHHHHHHHcCC---CCceEEEE
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGP--D--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVV 134 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~--~--~~~l~~~l~~l~~--~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aV 134 (302)
-+.+.|+++|..+...-+....... . ...+.+.|....+ .|+|+.++-..+..+.+++.+.++ +++.++..
T Consensus 157 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~ 236 (298)
T 3tb6_A 157 GFIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGY 236 (298)
T ss_dssp HHHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEec
Confidence 3566777887765432222221111 1 2335555655555 788888887777777788888775 36666666
Q ss_pred Chh
Q 022128 135 GAG 137 (302)
Q Consensus 135 G~~ 137 (302)
+..
T Consensus 237 d~~ 239 (298)
T 3tb6_A 237 DDS 239 (298)
T ss_dssp BCC
T ss_pred CCc
Confidence 554
No 334
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=39.43 E-value=55 Score=26.60 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=20.4
Q ss_pred HHcCCCCEEEEECc-------HHHHHHHHHhhhc
Q 022128 224 KQALSIPVVAVASP-------SAVRSSWVNLISD 250 (302)
Q Consensus 224 ~~~~~~d~ivftS~-------s~v~~~~~~~l~~ 250 (302)
+.+...|.++|.|| ..++ ++++++..
T Consensus 63 ~~i~~aD~~ii~tPeYn~s~pg~LK-n~iDwlsr 95 (190)
T 3u7r_A 63 DRIEHSDAVLAITPEYNRSYPGMIK-NAIDWATR 95 (190)
T ss_dssp HHHHTSSEEEEECCCBTTBCCHHHH-HHHHHHHC
T ss_pred HHHHhCCcEEEechhhcccCCHHHH-HHHHHhcc
Confidence 34578999999997 5788 89998854
No 335
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=39.24 E-value=1.1e+02 Score=22.49 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=66.0
Q ss_pred CCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~ 249 (302)
...+||++..+.. +..|.+.|+..|+.|..+ . ...+.++.+ ..+|+|++--. ...+ +++.++
T Consensus 13 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~-~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~--~~~~l~ 81 (153)
T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------R-DATQALQLLASREVDLVISAAHLPQMDGPT--LLARIH 81 (153)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------S-SHHHHHHHHHHSCCSEEEEESCCSSSCHHH--HHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------C-CHHHHHHHHHcCCCCEEEEeCCCCcCcHHH--HHHHHH
Confidence 3468999987654 678889999888654321 1 112222222 57898887432 2333 334444
Q ss_pred cccCCCceEEEECH----HHHHHHHHcC-CCeEEecCCCChHHHHHHHHHHHHc
Q 022128 250 DTEQWSNSVACIGE----TTASAAKRLG-LKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 250 ~~~~~~~~i~~IG~----~Ta~~l~~~G-~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+. ...+++++++. .....+.+.| ... ++.+..+.+.|...|...++.
T Consensus 82 ~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~-~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 82 QQ-YPSTTRILLTGDPDLKLIAKAINEGEIYR-YLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp HH-CTTSEEEEECCCCCHHHHHHHHHTTCCSE-EECSSCCHHHHHHHHHHHHHH
T ss_pred hH-CCCCeEEEEECCCCHHHHHHHHhCCCcce-EEeCCCCHHHHHHHHHHHHHH
Confidence 32 22466776653 3444555677 765 667778999999999887753
No 336
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=39.07 E-value=30 Score=28.29 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHcCCCCEEEEECc-------HHHHHHHHHhhhc
Q 022128 223 LKQALSIPVVAVASP-------SAVRSSWVNLISD 250 (302)
Q Consensus 223 ~~~~~~~d~ivftS~-------s~v~~~~~~~l~~ 250 (302)
.+.+...|.|+|.|| ..++ +|++.+..
T Consensus 68 ~~~i~~AD~iVi~tP~Y~~s~p~~LK-~~iD~~~~ 101 (199)
T 4hs4_A 68 AQQIATADAVVIVTPEYNYSVPGVLK-NAIDWLSR 101 (199)
T ss_dssp HHHHHHSSEEEEEECCBTTBCCHHHH-HHHHHHTT
T ss_pred HHHHHhCCEEEEEcCccCCCcCHHHH-HHHHHhcc
Confidence 334568899999987 4678 88888865
No 337
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=39.02 E-value=1e+02 Score=21.89 Aligned_cols=109 Identities=12% Similarity=0.007 Sum_probs=62.1
Q ss_pred CEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~~ 251 (302)
.+||++..+.. +..+...|+ .|++|... . ...+.++.+ ..+|+|++-- .+..+ +++.+++.
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~--------~-~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~--~~~~l~~~ 72 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTA--------A-DGASGLQQALAHPPDVLISDVNMDGMDGYA--LCGHFRSE 72 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEE--------S-SHHHHHHHHHHSCCSEEEECSSCSSSCHHH--HHHHHHHS
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEE--------C-CHHHHHHHHhcCCCCEEEEeCCCCCCCHHH--HHHHHHhC
Confidence 58888877654 456677776 77654311 1 112222222 5788877742 12333 44444443
Q ss_pred c-CCCceEEEECHHHH---HHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 252 E-QWSNSVACIGETTA---SAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 252 ~-~~~~~i~~IG~~Ta---~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
. ....++++++.... ..+.+.|... ++.+..+.+.|++.|...++.+.
T Consensus 73 ~~~~~~pii~~s~~~~~~~~~~~~~g~~~-~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 73 PTLKHIPVIFVSGYAPRTEGPADQPVPDA-YLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp TTTTTCCEEEEESCCC-----TTSCCCSE-EEESSCCHHHHHHHHHHHHHHHC
T ss_pred CccCCCCEEEEeCCCcHhHHHHhhcCCce-EEeccCCHHHHHHHHHHHHhhhc
Confidence 2 22466776654321 3344467654 66788899999999999886543
No 338
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=38.82 E-value=33 Score=27.70 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=41.2
Q ss_pred EEEEeCCCcc----hh----hHHHHHHhCCCeeEEEeeeeeecCC-C-----Cc---HHHHHHcCCCCEEEEECc-----
Q 022128 180 TVLYPASAKA----SN----EIEEGLSNRGFEVVRLNTYTTEPVH-H-----VD---QTVLKQALSIPVVAVASP----- 237 (302)
Q Consensus 180 ~vL~~rg~~~----~~----~L~~~L~~~G~~v~~~~vY~~~~~~-~-----~~---~~~~~~~~~~d~ivftS~----- 237 (302)
|||++.|... .. .+.+.++ .|.+|+.+.+|+. |.- . .. .+..+.+...|.|+|.||
T Consensus 4 kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~ 81 (192)
T 3fvw_A 4 RILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYA 81 (192)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTB
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccC
Confidence 6666655431 12 3444454 5788888888752 211 0 01 223444568899999987
Q ss_pred --HHHHHHHHHhhhc
Q 022128 238 --SAVRSSWVNLISD 250 (302)
Q Consensus 238 --s~v~~~~~~~l~~ 250 (302)
..++ .|++.+..
T Consensus 82 ~p~~lK-~~iD~~~~ 95 (192)
T 3fvw_A 82 IPGPVK-NLLDWLSR 95 (192)
T ss_dssp CCHHHH-HHHHHHTS
T ss_pred CCHHHH-HHHHHhhc
Confidence 5788 88888764
No 339
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=38.66 E-value=1.6e+02 Score=25.24 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=37.1
Q ss_pred cCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceE------EeeeC--CCchHHHHHHhcCCCccEEEEeC
Q 022128 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQG--PDTDRLSSVLNADTIFDWIIITS 110 (302)
Q Consensus 44 ~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~~~--~~~~~l~~~l~~l~~~d~IifTS 110 (302)
-+..+.+|+||||-..+ -...+++.|.+.|++|+.+--- +.... .|.+.+.+.+ .+.|.||.+-
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~A 85 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI---MGVSAVLHLG 85 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH---TTCSEEEECC
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH---hCCCEEEECC
Confidence 34678899999998765 3567888999999998876321 11111 2344565655 4789998654
No 340
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=38.52 E-value=1.1e+02 Score=26.81 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=15.7
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+|+++...-..-...+.++..|+++..+++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 124 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEG 124 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecC
Confidence 345566655544432222344555655554443
No 341
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=38.47 E-value=79 Score=27.66 Aligned_cols=147 Identities=16% Similarity=0.120 Sum_probs=80.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEEChh
Q 022128 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGAG 137 (302)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IifTS~~a--v--~~f~~~l~~-~~~~~~~i~aVG~~ 137 (302)
.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|++.-|-- + +..++.+.. ...++.. +.
T Consensus 55 ~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDg~~-----~~ 126 (285)
T 3p2o_A 55 AKACEECGIKSLVYHLNENI---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFH-----PI 126 (285)
T ss_dssp HHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCS-----HH
T ss_pred HHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcccccccCC-----Hh
Confidence 45667789988766543211 223444444 4456899999988722 1 222332211 1122221 11
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeeec
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~~ 214 (302)
-.-.| .. |-...+.| -|+.+..+.|..... .|++++++. |+....-+...|...|+.|+.+.-+
T Consensus 127 N~g~l--~~-----g~~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~---- 193 (285)
T 3p2o_A 127 NVGYL--NL-----GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIK---- 193 (285)
T ss_dssp HHHHH--HT-----TCCSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT----
T ss_pred hhhhh--hc-----CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC----
Confidence 11111 11 32110333 467777777765533 789999886 5545667888999999988765422
Q ss_pred CCCCcHHHHHHcCCCCEEEEECc
Q 022128 215 VHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 215 ~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
... +.+.....|+|+-+-+
T Consensus 194 -t~~---L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 194 -TKD---LSLYTRQADLIIVAAG 212 (285)
T ss_dssp -CSC---HHHHHTTCSEEEECSS
T ss_pred -chh---HHHHhhcCCEEEECCC
Confidence 112 2223467898887765
No 342
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=38.36 E-value=34 Score=29.96 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---H----HHHHHHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---a----v~~f~~~l 121 (302)
.|.+|+++.+......+...++..|+++..+|+..-....|.+.+++.+.. .+...|++++++ + ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 477888886543333334667888999998886211111255677777743 356788888766 3 35555555
Q ss_pred HHc
Q 022128 122 KEA 124 (302)
Q Consensus 122 ~~~ 124 (302)
++.
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 343
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=38.34 E-value=38 Score=28.08 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=52.9
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhC-CCcEEEeceEEeeeCC-Cc----hHHHHHHhcCCCccEEEEeChHHHHH
Q 022128 50 NPKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDWIIITSPEAGSV 116 (302)
Q Consensus 50 g~~IlitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~-~~----~~l~~~l~~l~~~d~IifTS~~av~~ 116 (302)
.++|++...... ..-+.+.|+++ |+++.. +.... +. +.+.+.+..-.+.|+|+.++-..+..
T Consensus 127 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g 201 (276)
T 3ksm_A 127 ERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA-----APYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIG 201 (276)
T ss_dssp CEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE-----CCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHH
T ss_pred CceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE-----EecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhH
Confidence 346776654322 23456667777 665542 11111 21 23455565556789999999888888
Q ss_pred HHHHHHHcCC-CCceEEEEChhh
Q 022128 117 FLEAWKEAGT-PNVRIGVVGAGT 138 (302)
Q Consensus 117 f~~~l~~~~~-~~~~i~aVG~~T 138 (302)
+.+++.+.|+ .++.++..+...
T Consensus 202 ~~~al~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 202 ALVAIRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp HHHHHHHTTCTTSSEEEEESCCH
T ss_pred HHHHHHHcCCCCCeEEEEeCCCH
Confidence 8888998886 578888887644
No 344
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=38.18 E-value=42 Score=28.27 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHH
Q 022128 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (302)
Q Consensus 50 g~~IlitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~ 118 (302)
.++|++...... ..-+.+.|+++|..+.....+.. ..+. +.+.+.+..-.+.|+|+..+-..+..+.
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI--ETPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALV 204 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT--TSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecc--ccchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 457777654322 24466778888886643322211 1122 2345555444578999999988888888
Q ss_pred HHHHHcCC---CCceEEEEChhh
Q 022128 119 EAWKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 119 ~~l~~~~~---~~~~i~aVG~~T 138 (302)
+++.+.|+ .++.++..+...
T Consensus 205 ~al~~~g~~vP~di~vig~d~~~ 227 (288)
T 3gv0_A 205 AGFEAAGVKIGEDVDIVSKQSAE 227 (288)
T ss_dssp HHHHTTTCCTTTSCEEEEEESST
T ss_pred HHHHHcCCCCCCceEEEEecChH
Confidence 88988886 478888877654
No 345
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=38.14 E-value=96 Score=22.75 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=44.7
Q ss_pred CCEEEEeCCCcchh-----hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcc-
Q 022128 178 KCTVLYPASAKASN-----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDT- 251 (302)
Q Consensus 178 ~~~vL~~rg~~~~~-----~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~- 251 (302)
..+||++|+.+... .+.+..+++|.++....+ +.....+ .+.++|+|++ +|.... .++.+++.
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~----~~~~~~~----~~~~~DvvLL-gPQV~y--~~~~ik~~~ 74 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSG----AYGAHYD----IMGVYDLIIL-APQVRS--YYREMKVDA 74 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEE----ETTSCTT----TGGGCSEEEE-CGGGGG--GHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEc----chHHHHh----hccCCCEEEE-ChHHHH--HHHHHHHHh
Confidence 46899999988653 455666678877644331 1111111 1346787554 666443 33444432
Q ss_pred cCCCceEEEECHHHHH
Q 022128 252 EQWSNSVACIGETTAS 267 (302)
Q Consensus 252 ~~~~~~i~~IG~~Ta~ 267 (302)
...++++.+|-+....
T Consensus 75 ~~~~ipV~vI~~~~Yg 90 (108)
T 3nbm_A 75 ERLGIQIVATRGMEYI 90 (108)
T ss_dssp TTTTCEEEECCHHHHH
T ss_pred hhcCCcEEEeCHHHhh
Confidence 2336889999886543
No 346
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=38.11 E-value=1.4e+02 Score=26.07 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=52.4
Q ss_pred CCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (302)
Q Consensus 49 ~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Iif-TS~~av~~f~~~l~ 122 (302)
..++|.+..... ..+.+.+.|++.|+++...-.+... ..|.......+.. .+.|.|++ .+......+++++.
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDAK 219 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 457787765432 2346788899999987643322211 1244333333323 46889885 77777788888898
Q ss_pred HcCCCCceEEEEC
Q 022128 123 EAGTPNVRIGVVG 135 (302)
Q Consensus 123 ~~~~~~~~i~aVG 135 (302)
+.++ +.+++..+
T Consensus 220 ~~g~-~~~~~~~~ 231 (392)
T 3lkb_A 220 RLGL-KMRHLGAH 231 (392)
T ss_dssp HTTC-CCEEEECG
T ss_pred HcCC-CceEEEec
Confidence 8887 45666553
No 347
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=38.08 E-value=64 Score=25.97 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=33.5
Q ss_pred CeEEEeCCC-CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 51 ~~IlitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
++|+|.-.. +.-..+.+.|++.|+++..++. + + .+.++|.||++-+..
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~------~--~-------~l~~~d~lil~G~g~ 51 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD------P--K-------AHEEADLLVLPGQGH 51 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS------T--T-------SCSSCSEEEECCCSC
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC------h--H-------HcccCCEEEECCCCc
Confidence 578888533 3456788999999998886641 1 1 356799999977443
No 348
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=38.04 E-value=52 Score=26.13 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=35.0
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCC-----------cHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHV-----------DQTVLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~-----------~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
.+.+.|.+.|++|+.+.+++.. .+.. +....+.+...|.|+|.|| ..++ .|++.+.
T Consensus 25 ~i~~~l~~~g~~v~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~~~~~lk-~~ld~~~ 98 (200)
T 2a5l_A 25 QIARGVEQGGFEARVRTVPAVS-TECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGNMASPLK-YFLDGTS 98 (200)
T ss_dssp HHHHHHHHTTCEEEEEBCCCEE-C-------------CCBCCHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHTCH
T ss_pred HHHHHHhhCCCEEEEEEhhhcc-chhhhhccccccccCchhhHHHHHHCCEEEEEcChhccCccHHHH-HHHHHHH
Confidence 5667777788888877777652 1110 0001223458899999986 4677 7877764
No 349
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=38.03 E-value=1.6e+02 Score=25.41 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=23.4
Q ss_pred hhHHHHHHhCCCeeEEEeeeeeecCCCCc
Q 022128 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (302)
Q Consensus 191 ~~L~~~L~~~G~~v~~~~vY~~~~~~~~~ 219 (302)
-.+.+.|.+.|+++.|+-+.-..|..+-+
T Consensus 37 ~~~~~~l~~~GaD~iElGiPfSDP~aDGp 65 (271)
T 3nav_A 37 LAIMQTLIDAGADALELGMPFSDPLADGP 65 (271)
T ss_dssp HHHHHHHHHTTCSSEEEECCCCCGGGCCS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCH
Confidence 45677788899999999999888876654
No 350
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=38.00 E-value=90 Score=27.30 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=80.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~l~~~d~IifTS~~a--v--~~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|-- + +..++++.. ...++.. +
T Consensus 55 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~KDVDG~~-----~ 126 (285)
T 3l07_A 55 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFH-----P 126 (285)
T ss_dssp HHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCS-----H
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcccccccCC-----h
Confidence 345667789988766542211 223444444 4456799999998821 1 222332211 1122221 2
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.-.-.|. . |-...+.| -|+.+..+.|..... .|++++++. |+.....+...|...|+.|+.+.-+
T Consensus 127 ~N~G~l~-~------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--- 194 (285)
T 3l07_A 127 TNVGRLQ-L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--- 194 (285)
T ss_dssp HHHHHHH-H------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---
T ss_pred hheeehh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC---
Confidence 1111111 1 32122343 467777777765532 689999986 4545677888999999988655321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECc
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
... +.+.+...|+|+-+.+
T Consensus 195 --t~~---L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 195 --TTD---LKSHTTKADILIVAVG 213 (285)
T ss_dssp --CSS---HHHHHTTCSEEEECCC
T ss_pred --chh---HHHhcccCCEEEECCC
Confidence 112 2223467898887765
No 351
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=37.99 E-value=42 Score=28.31 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHhcccCCCCCCEEEEe-CCCcchhhHHHHHHhCC
Q 022128 164 GKILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRG 201 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~-rg~~~~~~L~~~L~~~G 201 (302)
+..+++.|.+. |.+|++. |.+...+.+.+.+++.|
T Consensus 21 G~aiA~~la~~---Ga~Vvi~~r~~~~~~~~~~~~~~~~ 56 (256)
T 4fs3_A 21 AFGVAKVLDQL---GAKLVFTYRKERSRKELEKLLEQLN 56 (256)
T ss_dssp HHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHGGGT
T ss_pred HHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC
Confidence 44455555542 3455443 33444455555555543
No 352
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=37.96 E-value=74 Score=25.26 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
.+.|.+.|......++-+++.........+.+.|+..|+.+
T Consensus 33 ~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~ 73 (185)
T 2jgn_A 33 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYAC 73 (185)
T ss_dssp HHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCce
Confidence 34455555443223334555555566678888888888665
No 353
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=37.96 E-value=1.6e+02 Score=23.67 Aligned_cols=113 Identities=15% Similarity=0.075 Sum_probs=64.8
Q ss_pred CEEEEeCCCcc----hhhHHHHHHhCCCeeEEEeeeeeecCCCCc--HHHHHHc--CCCCEEEEECcHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~ 250 (302)
-||. +.++.+ .+.|.+.|++.|++|..+-+|.....+++. ..+.+.. ++.|--++-..+.+- ..+...+
T Consensus 21 MkIa-IgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG-~sIaANK- 97 (169)
T 3ph3_A 21 MKIG-IGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLG-ISIAANK- 97 (169)
T ss_dssp CEEE-EEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHH-HHHHHTT-
T ss_pred CEEE-EEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHH-HHHHhhc-
Confidence 4554 555554 456778889999999999888766544322 1122222 456643333333333 2222221
Q ss_pred ccCCCce-EEEECHHHHHHHHHc-CCCeEEecCCCChHHHHHHHHHHH
Q 022128 251 TEQWSNS-VACIGETTASAAKRL-GLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 251 ~~~~~~~-i~~IG~~Ta~~l~~~-G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
..+++ ..|.-+.+|...++. .-+.+....+..-.+++..|.+.+
T Consensus 98 --v~GIRAAlc~d~~sA~~aR~hNnANVL~lG~Rvig~~lA~~Iv~~f 143 (169)
T 3ph3_A 98 --VPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTW 143 (169)
T ss_dssp --STTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHH
T ss_pred --CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHH
Confidence 22444 457788888888886 444555566666666776666554
No 354
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=37.93 E-value=1.3e+02 Score=26.55 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=23.2
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
.++||++.+......+...+++.|++|..+..
T Consensus 11 ~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~ 42 (391)
T 1kjq_A 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR 42 (391)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 46899986654456678889999988765554
No 355
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=37.74 E-value=1.1e+02 Score=21.73 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=62.3
Q ss_pred CCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~ 249 (302)
.+.+||++..+.. +..+.+.|+..|+.+.. + . ...+..+.+ ..+|.|++--. ...+ +++.++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~-----~-~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~--~~~~l~ 74 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVL---A-----A-DGVDALELLGGFTPDLMICDIAMPRMNGLK--LLEHIR 74 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEE---E-----S-CHHHHHHHHTTCCCSEEEECCC-----CHH--HHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEE---e-----C-CHHHHHHHHhcCCCCEEEEecCCCCCCHHH--HHHHHH
Confidence 3578999987654 57888899999976532 1 1 222333333 46888777432 2222 334444
Q ss_pred cccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCC-ChHHHHHHHHHHHHc
Q 022128 250 DTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 298 (302)
Q Consensus 250 ~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~-~~~~ll~~i~~~~~~ 298 (302)
+.. ...++++++ +.....+.+.|... ++.+.. +.+.|.+.+...+..
T Consensus 75 ~~~-~~~~ii~~t~~~~~~~~~~~~~~g~~~-~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 75 NRG-DQTPVLVISATENMADIAKALRLGVED-VLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp HTT-CCCCEEEEECCCCHHHHHHHHHHCCSE-EEESCC---CHHHHHHHHHHC-
T ss_pred hcC-CCCCEEEEEcCCCHHHHHHHHHcCCCE-EEeCCCCcHHHHHHHHHHHhch
Confidence 321 245566553 23344566789875 455555 788888888887653
No 356
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=37.73 E-value=1.2e+02 Score=24.88 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
..+.+++||||-.... ...+++.|.+.|++++.+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 44 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIIS 44 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5677999999987654 567889999999988753
No 357
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.69 E-value=44 Score=24.89 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.0
Q ss_pred CCCCCCeEEEeCCCC--ChHHHHHHHHhCCCcEE
Q 022128 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (302)
Q Consensus 46 ~~l~g~~IlitR~~~--~~~~l~~~L~~~G~~v~ 77 (302)
.++.|++|++|-.-. ..+++.+.++++|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 578999999998653 57889999999999865
No 358
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=37.60 E-value=42 Score=28.65 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=36.9
Q ss_pred CCEEEEeCC--CcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 178 KCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 178 ~~~vL~~rg--~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
.++|+++.. ...-..+.+.|++.|++++.+.+|.....+.. +.++|.|+++-.
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~-------~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAE-------IRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSC-------GGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCc-------cccCCEEEECCC
Confidence 357888854 34567889999999999988888765533321 346788777643
No 359
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=37.60 E-value=1.1e+02 Score=22.82 Aligned_cols=119 Identities=12% Similarity=0.020 Sum_probs=62.7
Q ss_pred HHHHHHhcccCCC-CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHH-HH
Q 022128 164 GKILASELPKNGK-KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-VR 241 (302)
Q Consensus 164 ~e~L~~~L~~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~-v~ 241 (302)
.+.|++.+..... ++-++++.......+.+.+..++.|..+ .+ ...+ .+++.+.+...|+++++|... .-
T Consensus 17 ~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v---~~---g~~~--~~~~~~~~~~adv~v~ps~~e~~~ 88 (166)
T 3qhp_A 17 QSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKA---EF---GFVN--SNELLEILKTCTLYVHAANVESEA 88 (166)
T ss_dssp HHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEE---EC---CCCC--HHHHHHHHTTCSEEEECCCSCCCC
T ss_pred HHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeE---EE---eecC--HHHHHHHHHhCCEEEECCcccCcc
Confidence 4445555554322 2345665554445677888888877622 11 1112 233444457899999988310 00
Q ss_pred HHHHHhhhcccCCCc-eEEEE--CHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 242 SSWVNLISDTEQWSN-SVACI--GETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 242 ~~~~~~l~~~~~~~~-~i~~I--G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
..+++.+. .++ ++++- +....+.+.+.|. .+ ...+.+++.++|.+.+..
T Consensus 89 ~~~~Eama----~G~vPvi~~~~~~~~~~~~~~~~~---~~-~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 89 IACLEAIS----VGIVPVIANSPLSATRQFALDERS---LF-EPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp HHHHHHHH----TTCCEEEECCTTCGGGGGCSSGGG---EE-CTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHh----cCCCcEEeeCCCCchhhhccCCce---EE-cCCCHHHHHHHHHHHHhC
Confidence 01223222 255 78772 2223333333222 23 445899999999888753
No 360
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=37.49 E-value=1.1e+02 Score=25.04 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.0
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
.+.|++||||-.... ...+++.|.+.|++|+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467899999987543 567888999999987754
No 361
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=37.38 E-value=1.2e+02 Score=21.99 Aligned_cols=109 Identities=17% Similarity=0.112 Sum_probs=63.9
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHH-cCCCCEEEEECc----HHHHHHHHHhhhccc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASP----SAVRSSWVNLISDTE 252 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~ivftS~----s~v~~~~~~~l~~~~ 252 (302)
.+||++..+. .+..+.+.|...|+.|.... . ....-..+.. -..+|+|++--. ...+ +++.+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~---~---~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~--~~~~l~~~- 74 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTAS---S---STEGLRIFTENCNSIDVVITDMKMPKLSGMD--ILREIKKI- 74 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---S---HHHHHHHHHHTTTTCCEEEEESCCSSSCHHH--HHHHHHHH-
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeC---C---HHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH--HHHHHHHh-
Confidence 5788887765 46788889999886543211 1 0111111221 146888877532 2333 33444432
Q ss_pred CCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 253 QWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 253 ~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
....++++++. .....+.+.|... ++.+..+.+.|.+.|...++
T Consensus 75 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~l~~~~~ 122 (143)
T 3jte_A 75 TPHMAVIILTGHGDLDNAILAMKEGAFE-YLRKPVTAQDLSIAINNAIN 122 (143)
T ss_dssp CTTCEEEEEECTTCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHHHHHHHhCcce-eEeCCCCHHHHHHHHHHHHH
Confidence 22456666542 3355566789875 56677899999999988765
No 362
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=37.34 E-value=88 Score=27.03 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=33.4
Q ss_pred CCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECH--------HHHHHHHHcCCCeEEecC-CCChHHHHHHHHH
Q 022128 227 LSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGE--------TTASAAKRLGLKNVYYPT-HPGLEGWVDSILE 294 (302)
Q Consensus 227 ~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~--------~Ta~~l~~~G~~~~~v~~-~~~~~~ll~~i~~ 294 (302)
...|+++++|. -. .+++.+.- ++++++..- ..++.+.+.|. -..++. ..+.++|.++|.+
T Consensus 253 ~~ad~~v~~sg--~~-~~~EAma~----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~ 321 (364)
T 1f0k_A 253 AWADVVVCRSG--AL-TVSEIAAA----GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAG 321 (364)
T ss_dssp HHCSEEEECCC--HH-HHHHHHHH----TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHT
T ss_pred HhCCEEEECCc--hH-HHHHHHHh----CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHh
Confidence 45688888886 22 33344332 456665421 12556777776 434432 2347888888764
No 363
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Probab=37.31 E-value=2.3e+02 Score=25.47 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=44.8
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeee----cCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCceEEEECHHH
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSNSVACIGETT 265 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~----~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~~i~~IG~~T 265 (302)
.+.|.+.|+++|+++..+-..-=. |.. +.+.+.-....+ ..-|.++++ .+.+. +. .+.+|+|+|-++
T Consensus 190 t~~Ll~~L~~kGv~~a~vTLHVG~GTF~PV~---e~i~~H~MHsE~-~~V~~~ta~-~in~a-ka---~G~RViAVGTTs 260 (345)
T 1wdi_A 190 TPELLERLREMGVELRFLTLHVGPGTFRPVK---GDPEKHEMHAEP-YAIPEEVAE-AVNRA-KA---EGRRVVAVGTTV 260 (345)
T ss_dssp CHHHHHHHHHTTCEEEEEEEEESGGGCCC------------CCCEE-EEECHHHHH-HHHHH-HH---TTCCEEEESHHH
T ss_pred CHHHHHHHHHCCCeEEEEEEeecCCCCcccc---cchhcCCccceE-EEECHHHHH-HHHHH-HH---cCCeEEEEecch
Confidence 578999999999998776664322 222 111111122333 455777777 55432 22 256899999999
Q ss_pred HHHHHH
Q 022128 266 ASAAKR 271 (302)
Q Consensus 266 a~~l~~ 271 (302)
..+|+.
T Consensus 261 vR~LEs 266 (345)
T 1wdi_A 261 VRALES 266 (345)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 364
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A
Probab=37.30 E-value=2.1e+02 Score=25.03 Aligned_cols=144 Identities=17% Similarity=0.121 Sum_probs=76.3
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHH-HHHHHHHHHc
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEA 124 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av-~~f~~~l~~~ 124 (302)
+...++|+++.+. .+...+.|++. |+++...+- ....+.+++.+. +.++|.++..+...+ ..+++.+
T Consensus 5 ~~~~~~il~~~~~--~~~~~~~l~~~~~~~v~~~~~---~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~l~~~--- 73 (330)
T 2gcg_A 5 PVRLMKVFVTRRI--PAEGRVALARAADCEVEQWDS---DEPIPAKELERG---VAGAHGLLCLLSDHVDKRILDAA--- 73 (330)
T ss_dssp --CCEEEEESSCC--CHHHHHHHHHCTTEEEEECCS---SSCCCHHHHHHH---HTTCSEEEECTTSCBCHHHHHHH---
T ss_pred CCCCCEEEEECCC--CHHHHHHHHhcCCceEEEecC---CCCCCHHHHHHH---hcCCeEEEECCCCCCCHHHHHhc---
Confidence 3345689998753 45667778776 355443220 001122344443 467898887543211 1233332
Q ss_pred CCCCceEE-EEChhh----HHHHHHHhhccCCCCceeccCCCccHHHHHHh-------c-c------------cC-----
Q 022128 125 GTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE-------L-P------------KN----- 174 (302)
Q Consensus 125 ~~~~~~i~-aVG~~T----a~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~-------L-~------------~~----- 174 (302)
+ +++|++ ..|.++ -.++.+. |+.+...|.. +++.+++. + . .|
T Consensus 74 ~-~~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~~~-~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~ 145 (330)
T 2gcg_A 74 G-ANLKVISTMSVGIDHLALDEIKKR------GIRVGYTPDV-LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKP 145 (330)
T ss_dssp C-TTCCEEEESSSCCTTBCHHHHHHT------TCEEECCCST-THHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCT
T ss_pred C-CCceEEEECCcccccccHHHHHhC------CceEEeCCCC-ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCc
Confidence 1 244544 333332 2556677 8887666542 33332220 0 0 01
Q ss_pred ------CCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeee
Q 022128 175 ------GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 175 ------~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
...+++|.++....-...+...|...|.+|. +|.+
T Consensus 146 ~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~---~~d~ 186 (330)
T 2gcg_A 146 LWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRF---LYTG 186 (330)
T ss_dssp TSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEE---EEES
T ss_pred ccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE---EECC
Confidence 1257789999776666778899999998764 5554
No 365
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=37.29 E-value=1.3e+02 Score=25.25 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCC-CceEEEEChh
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~-~~~i~aVG~~ 137 (302)
.-+.+.|+++|..+.....+... .+. ..+.+.+..-.+.|+|+..+-..+..+.+++.+.++. ++.++..+..
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~ 223 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGR--GDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTD 223 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCC
T ss_pred HHHHHHHHhhCCCCEEEEEecCC--CCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCC
Confidence 34667788888877655433321 122 2355556555678999999888888888889888874 7788888764
Q ss_pred h
Q 022128 138 T 138 (302)
Q Consensus 138 T 138 (302)
.
T Consensus 224 ~ 224 (305)
T 3g1w_A 224 K 224 (305)
T ss_dssp H
T ss_pred H
Confidence 4
No 366
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=37.29 E-value=54 Score=29.57 Aligned_cols=79 Identities=15% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCeEEEeC--CCCChHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-------HHHHH
Q 022128 50 NPKVVVTR--ERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSV 116 (302)
Q Consensus 50 g~~IlitR--~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-------~av~~ 116 (302)
.++|++.- +.+...+ +.+.+++.|+++..+.+-+. +.. .....+.++|.|||-|| ..++.
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~----~~~---~~~~~l~~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS----DIT---KVALHTYDSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC----CHH---HHHHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC----CHH---HHHHHHHhCCEEEEEcCccCcCchHHHHH
Confidence 45666553 2233333 44456667876654443221 112 22224567999999987 36788
Q ss_pred HHHHHHHcCC-CCceEEEEC
Q 022128 117 FLEAWKEAGT-PNVRIGVVG 135 (302)
Q Consensus 117 f~~~l~~~~~-~~~~i~aVG 135 (302)
|++.+...++ .+.+++++|
T Consensus 329 fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHhhcccCCCEEEEEE
Confidence 8887765555 566666665
No 367
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=37.25 E-value=13 Score=30.35 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=14.1
Q ss_pred HHHHHHHHhCC--CcEEEeceE
Q 022128 63 GKLIKALAKHR--IDCLELPLI 82 (302)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~P~~ 82 (302)
+.+.+.+++.| .++..+.+.
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHHHHhCCCCeEEEeeCC
Confidence 34566677766 888887776
No 368
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=37.25 E-value=90 Score=27.53 Aligned_cols=147 Identities=13% Similarity=0.082 Sum_probs=78.3
Q ss_pred HHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeChHH------HHHHHHHHHH-cCCCCceEEEECh
Q 022128 67 KALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA------GSVFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 67 ~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~l~~~d~IifTS~~a------v~~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
+.+++.|++...+-+=+. ...++|.+. |+.....|.|+.--|-- -+..++.+.. ...+++.-+-+|
T Consensus 58 k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p~KDVDG~hp~N~G- 133 (301)
T 1a4i_A 58 KAAEEIGIKATHIKLPRT---TTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAG- 133 (301)
T ss_dssp HHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHH-
T ss_pred HHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCCCCCccCCChhhHH-
Confidence 346777988876533221 122344433 44457789999876532 1222222211 112222221111
Q ss_pred hhHHHHHHHhhccCCCC-ceeccCCCccHHHHHHhcccCCC--CCCEEEEeCCC-cchhhHHHHHHhCCCeeEEEeeeee
Q 022128 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNGK--KKCTVLYPASA-KASNEIEEGLSNRGFEVVRLNTYTT 212 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~-~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~rg~-~~~~~L~~~L~~~G~~v~~~~vY~~ 212 (302)
.| +. |- ...+.| -|+++..+.|..... .|++++++... .....+...|...|+.|+.+.-.
T Consensus 134 ----~l--~~-----g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-- 198 (301)
T 1a4i_A 134 ----RL--AR-----GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-- 198 (301)
T ss_dssp ----HH--HT-----TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--
T ss_pred ----HH--hc-----CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC--
Confidence 11 11 31 122343 467887777765542 68899988665 44666888899999998766311
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEECcH
Q 022128 213 EPVHHVDQTVLKQALSIPVVAVASPS 238 (302)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~ivftS~s 238 (302)
... +.+.+...|+|+-+.+.
T Consensus 199 ---t~~---L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 199 ---TAH---LDEEVNKGDILVVATGQ 218 (301)
T ss_dssp ---CSS---HHHHHTTCSEEEECCCC
T ss_pred ---ccc---HHHHhccCCEEEECCCC
Confidence 112 22334678887776654
No 369
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=37.23 E-value=1.1e+02 Score=21.57 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=65.0
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhcc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISDT 251 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~~ 251 (302)
++||++-.+. .+..+...|+..|++|.. + . ...+.++.+ ..+|+|++-- .+..+ +++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~---~-----~-~~~~al~~~~~~~~dlii~D~~~p~~~g~~--~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHC---A-----H-DGNEAVEMVEELQPDLILLDIMLPNKDGVE--VCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEE---E-----S-SHHHHHHHHHTTCCSEEEEETTSTTTHHHH--HHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEE---e-----C-CHHHHHHHHhhCCCCEEEEeCCCCCCCHHH--HHHHHHhc
Confidence 5788887655 467788889999976532 1 1 122223322 4788877742 23333 33444432
Q ss_pred cCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 252 EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 252 ~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
...+++++. +.....+.+.|... ++.+..+.+.|+..+...++.
T Consensus 72 --~~~~ii~~t~~~~~~~~~~~~~~ga~~-~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 72 --YDMPIIMLTAKDSEIDKVIGLEIGADD-YVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp --CCSCEEEEEESSCHHHHHHHHHTTCCE-EEEESCCHHHHHHHHHHHHTC
T ss_pred --CCCCEEEEECCCChHHHHHHHhCCcce-eEcCCCCHHHHHHHHHHHHhc
Confidence 245555543 33445566788875 667878999999999888754
No 370
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=37.22 E-value=1.9e+02 Score=28.72 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=56.6
Q ss_pred CeEEEeCCCC------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022128 51 PKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (302)
Q Consensus 51 ~~IlitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~ 124 (302)
..|++..+.+ .-.+|.+.|++.|++|+.. .+.++....++.-..+++||++---....+++.+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~ 73 (715)
T 3n75_A 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKM 73 (715)
T ss_dssp CEEEEECCCSCHHHHHHHHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCcccchHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHh
Confidence 3466666554 3467889999999998522 3445555666666789999999876666678877776
Q ss_pred CCCCceEEEEChhh
Q 022128 125 GTPNVRIGVVGAGT 138 (302)
Q Consensus 125 ~~~~~~i~aVG~~T 138 (302)
+ .++++|.++...
T Consensus 74 ~-~~iPVFl~~~~~ 86 (715)
T 3n75_A 74 N-ENLPLYAFANTY 86 (715)
T ss_dssp C-TTCEEEEECCTT
T ss_pred C-CCCCEEEEecCC
Confidence 5 589999988774
No 371
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=37.17 E-value=37 Score=27.10 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=30.6
Q ss_pred hHHHHHHh-CCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcH-------HHHHHHHHhhhc
Q 022128 192 EIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSSWVNLISD 250 (302)
Q Consensus 192 ~L~~~L~~-~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s-------~v~~~~~~~l~~ 250 (302)
.+.+.|.+ .|++|+.+.+.+. ... .+...|.|+|.||. .++ .|++.+..
T Consensus 24 ~i~~~l~~~~g~~v~~~~l~~~-----~~~----~l~~aD~ii~gsP~y~g~~~~~lk-~fld~~~~ 80 (188)
T 2ark_A 24 LVAEGARSLEGTEVRLKHVDEA-----TKE----DVLWADGLAVGSPTNMGLVSWKMK-RFFDDVLG 80 (188)
T ss_dssp HHHHHHHTSTTEEEEEEETTTC-----CHH----HHHHCSEEEEEEECBTTBCCHHHH-HHHHHTGG
T ss_pred HHHHHHhhcCCCeEEEEEhhhC-----CHH----HHHhCCEEEEEeCccCCcCCHHHH-HHHHHHhh
Confidence 45667776 7877655554332 111 23467999998864 577 78877654
No 372
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=37.09 E-value=2.6e+02 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=29.0
Q ss_pred ccCCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEE
Q 022128 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (302)
Q Consensus 43 ~~~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~ 78 (302)
..++|+.|.||..+-.-. +..-|.+.|.+.|++|..
T Consensus 36 ~~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~ 72 (436)
T 3h9u_A 36 GPSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRW 72 (436)
T ss_dssp TTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred hccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEE
Confidence 345999999999887654 566788899999999865
No 373
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=36.97 E-value=1.6e+02 Score=23.41 Aligned_cols=106 Identities=22% Similarity=0.193 Sum_probs=63.9
Q ss_pred EEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECcHHHHHHHHHhhhcccCCCc
Q 022128 180 TVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSSWVNLISDTEQWSN 256 (302)
Q Consensus 180 ~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~s~v~~~~~~~l~~~~~~~~ 256 (302)
+||++-.+. .+..|...|...|+.|.. + . ...+....+ ..+|+|+....+..+ ++..+.+. ....
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~---~-----~-~~~~al~~l~~~~~dlvilp~~~g~~--~~~~lr~~-~~~~ 69 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADV---T-----E-SLEDGEYLMDIRNYDLVMVSDKNALS--FVSRIKEK-HSSI 69 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEE---E-----S-SHHHHHHHHTTSCCSEEEECCTTHHH--HHHHHHHH-CTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEE---E-----C-CHHHHHHHHhcCCCCEEEeCCCCHHH--HHHHHHhC-CCCC
Confidence 466665544 456788888888876531 1 1 122233333 468988843334444 44444443 2256
Q ss_pred eEEEEC----HHHHHHHHHcCCCeEEecCCC-ChHHHHHHHHHHHHc
Q 022128 257 SVACIG----ETTASAAKRLGLKNVYYPTHP-GLEGWVDSILEALRE 298 (302)
Q Consensus 257 ~i~~IG----~~Ta~~l~~~G~~~~~v~~~~-~~~~ll~~i~~~~~~ 298 (302)
++++++ +.....+.+.|... ++.+.. +.+.|++.|...++.
T Consensus 70 ~ii~lt~~~~~~~~~~~~~~Ga~~-~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHAFEQGADD-YIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSE-EEETTCSCTHHHHHHHHHHTSS
T ss_pred cEEEEECCCCHHHHHHHHHcCCCE-EEECCCCCHHHHHHHHHHHhcc
Confidence 777664 33555566779875 567777 899999999887754
No 374
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=36.69 E-value=97 Score=25.67 Aligned_cols=75 Identities=8% Similarity=-0.071 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCC---CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeChHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (302)
Q Consensus 46 ~~l~g~~IlitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Ii--fTS~~av~~f~~~ 120 (302)
..+.+++||||-.. .=...+++.|.+.|++++.+-.- . ...+.+.+.........++. +++..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~--~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVG--D--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESS--G--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecc--h--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 57789999999864 34677999999999987754211 1 11223333333334433433 4789999999887
Q ss_pred HHHc
Q 022128 121 WKEA 124 (302)
Q Consensus 121 l~~~ 124 (302)
+.+.
T Consensus 86 ~~~~ 89 (271)
T 3ek2_A 86 LKTH 89 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 375
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=36.66 E-value=2.1e+02 Score=24.78 Aligned_cols=175 Identities=15% Similarity=0.115 Sum_probs=87.0
Q ss_pred eEEEeCCCC-ChHHHHHHHHhCCCcEEEeceE------EeeeCCCchHHHHHHhcCCCccE-EEEeChHHHHHHHHHHHH
Q 022128 52 KVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNADTIFDW-IIITSPEAGSVFLEAWKE 123 (302)
Q Consensus 52 ~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~~~~~~~~l~~~l~~l~~~d~-IifTS~~av~~f~~~l~~ 123 (302)
+|+|.-..+ ......+.|.+.|++ ...|+- ++...+-+..+.+......+.|. |+||.+..+....+.+.+
T Consensus 15 ~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea~~ 93 (297)
T 2yv2_A 15 RVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEAVD 93 (297)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHHHH
Confidence 466644332 234466777777887 222321 11000112335444422122565 558888888888877777
Q ss_pred cCCCCceEEEECh---------hhHHHHHHHhhccCCCCceeccCCCc---cH-HHHHHhcccCCCCCCEEEEeC-CCcc
Q 022128 124 AGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPA-SAKA 189 (302)
Q Consensus 124 ~~~~~~~i~aVG~---------~Ta~~l~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~r-g~~~ 189 (302)
.+ ++.++++. .-.+.+++. |+.+ +.|... +. ..+.-.++....+.++|-++. +..-
T Consensus 94 ~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l 163 (297)
T 2yv2_A 94 AG---IRLVVVITEGIPVHDTMRFVNYARQK------GATI-IGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTL 163 (297)
T ss_dssp TT---CSEEEECCCCCCHHHHHHHHHHHHHH------TCEE-ECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESCHHH
T ss_pred CC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCCeeEcccccceeecccCCCCCCCEEEEECCHHH
Confidence 65 45333322 223444555 7754 334311 11 111111222112335666553 3333
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCC-CCcHHHHHHc---CCCCEEEEECc
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQA---LSIPVVAVASP 237 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~~---~~~d~ivftS~ 237 (302)
...+.+.+..+|.-+..+.-.=..+.. ....++++.+ .+-++|++...
T Consensus 164 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 215 (297)
T 2yv2_A 164 TYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGE 215 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEC
T ss_pred HHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 456777888888887777666665532 2334455544 35667777755
No 376
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=36.50 E-value=28 Score=30.73 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=46.6
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH---H----HHHHHHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~---a----v~~f~~~l 121 (302)
.|.+|+++.+......+...++..|+++..+|+-.- ...|.+.+++.++...+...|++++++ + ++.+.+.+
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 160 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALV 160 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHH
Confidence 467899988754333355566678999998886321 112556777777433456788888876 2 34455555
Q ss_pred HHc
Q 022128 122 KEA 124 (302)
Q Consensus 122 ~~~ 124 (302)
++.
T Consensus 161 ~~~ 163 (392)
T 2z9v_A 161 SAH 163 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 377
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=36.44 E-value=1.8e+02 Score=23.92 Aligned_cols=106 Identities=11% Similarity=0.123 Sum_probs=58.4
Q ss_pred CCCEEEEeCCCc-----chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEE--ECcHH-----HHH
Q 022128 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV--ASPSA-----VRS 242 (302)
Q Consensus 177 ~~~~vL~~rg~~-----~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivf--tS~s~-----v~~ 242 (302)
+..+|++-+.++ |...+...|+..|++|..+-. ..+.+++.+.. .++|+|.+ ++..+ ++
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~------~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~- 163 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV------DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQK- 163 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS------SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHH-
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC------CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHH-
Confidence 346777765433 456778889999988754432 22233343332 57888888 55433 33
Q ss_pred HHHHhhhcccC-CCceEEEECHH-HHHHHHHcCCCeEEecCCCChHHHHHHHH
Q 022128 243 SWVNLISDTEQ-WSNSVACIGET-TASAAKRLGLKNVYYPTHPGLEGWVDSIL 293 (302)
Q Consensus 243 ~~~~~l~~~~~-~~~~i~~IG~~-Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~ 293 (302)
.+.+.+++... .++++++-|.. +.+.+++.|... .+ +|..+-++.++
T Consensus 164 ~~i~~l~~~~~~~~v~v~vGG~~~~~~~a~~iGad~--~~--~dA~~av~~a~ 212 (215)
T 3ezx_A 164 DLMDRLNEEKLRDSVKCMFGGAPVSDKWIEEIGADA--TA--ENAAEAAKVAL 212 (215)
T ss_dssp HHHHHHHHTTCGGGSEEEEESSSCCHHHHHHHTCCB--CC--SSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCHHHHHHhCCeE--EE--CCHHHHHHHHH
Confidence 34455544322 25788877764 444556667542 22 34444444443
No 378
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=36.29 E-value=43 Score=27.93 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=51.9
Q ss_pred CeEEEeCCC-C------ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 51 PKVVVTRER-G------KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 51 ~~IlitR~~-~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
++|++.... . +..-+.+.|+++|+++... . ....+. +.+.+.|..-.+.|+|+.++-..+-..++
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~--~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~ 199 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--Q--PADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALR 199 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--E--ECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--c--CCCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHH
Confidence 577765432 2 1233667888888865431 1 111121 23445554445689999999887778888
Q ss_pred HHHHcCCCCceEEEEChh
Q 022128 120 AWKEAGTPNVRIGVVGAG 137 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~ 137 (302)
++.+.|+.++.++..+..
T Consensus 200 al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 200 ALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HHHHHTCCSCEEEEEECC
T ss_pred HHHHcCCCCcEEEEecCC
Confidence 888888877777777653
No 379
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=36.24 E-value=40 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.2
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 022128 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (302)
Q Consensus 45 ~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~ 77 (302)
..++.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 3689999999997543 57889999999999875
No 380
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=36.24 E-value=24 Score=28.64 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=42.3
Q ss_pred CEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeecC----------------CCCcHHHHHHcCCCCEEEEEC
Q 022128 179 CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV----------------HHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 179 ~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~----------------~~~~~~~~~~~~~~d~ivftS 236 (302)
.+||++-+... .+.+.+.|++.|++|+.+.+++..+. ++......+.+...|.|+|.|
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 46666654332 23566777888999988888775100 000011122345789999988
Q ss_pred c-------HHHHHHHHHhhh
Q 022128 237 P-------SAVRSSWVNLIS 249 (302)
Q Consensus 237 ~-------s~v~~~~~~~l~ 249 (302)
| ..++ .|++.+.
T Consensus 87 P~y~~~~~~~lk-~~ld~~~ 105 (211)
T 1ydg_A 87 PTRFGGATSQMR-AFIDTLG 105 (211)
T ss_dssp EEETTEECHHHH-HHHHTTH
T ss_pred CccccCccHHHH-HHHHHhc
Confidence 5 5678 8887764
No 381
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=36.22 E-value=1.3e+02 Score=22.08 Aligned_cols=110 Identities=11% Similarity=0.129 Sum_probs=62.7
Q ss_pred CCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEE----CcHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivft----S~s~v~~~~~~~l~~ 250 (302)
+.+||++-.+. .+..+.+.|...|+.|.. +. ...+.++.+ ..+|+|++= -.+..+ +++.+++
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~mp~~~g~~--~~~~lr~ 82 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLC---VN------GAEQVLDAMAEEDYDAVIVDLHMPGMNGLD--MLKQLRV 82 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHH--HHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEE---eC------CHHHHHHHHhcCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 46899887655 467788889888876532 11 122222222 578888773 222333 3333332
Q ss_pred ---ccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 ---TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ---~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
......++++++ +.....+.+.|... ++.+..+.+.|++.|.+.....
T Consensus 83 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~-~l~KP~~~~~L~~~l~~~~~~~ 137 (143)
T 3m6m_D 83 MQASGMRYTPVVVLSADVTPEAIRACEQAGARA-FLAKPVVAAKLLDTLADLAVST 137 (143)
T ss_dssp HHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHC---
T ss_pred chhccCCCCeEEEEeCCCCHHHHHHHHHcChhh-eeeCCCCHHHHHHHHHHHHHhh
Confidence 111235566553 44556677789875 6778889999999998876543
No 382
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=36.11 E-value=1.4e+02 Score=26.09 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=9.0
Q ss_pred EEEECHHHHHHHHHc
Q 022128 258 VACIGETTASAAKRL 272 (302)
Q Consensus 258 i~~IG~~Ta~~l~~~ 272 (302)
+++..+...+.++..
T Consensus 216 ~~~~~~~~~~~~~~~ 230 (393)
T 2huf_A 216 PVSFSHRAVERYKRR 230 (393)
T ss_dssp EEEECHHHHHHHHTC
T ss_pred EEEECHHHHHHHhhc
Confidence 455566666666654
No 383
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=35.98 E-value=20 Score=29.46 Aligned_cols=43 Identities=14% Similarity=-0.044 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.+.+.+++.|.++..+-+.+ ..|.. +..+.+...|.|||.+|.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d~~---~~~~~l~~AD~iV~~~P~ 80 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYDVK---AEVQNFLWADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCCHH---HHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeCCc---cccHH---HHHHHHHhCCEEEEECCc
Confidence 44555666788888776653 22333 334445678999999964
No 384
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=35.93 E-value=2e+02 Score=24.34 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=83.7
Q ss_pred ceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCcch--hhHHHHHHhCCCeeEE
Q 022128 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS--NEIEEGLSNRGFEVVR 206 (302)
Q Consensus 129 ~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~--~~L~~~L~~~G~~v~~ 206 (302)
++.++.|+..-+++++.+ ...-+.++++.. +.+..++.+.+. |-.++.+..+... ....+.+++.|..+--
T Consensus 67 Vpnit~G~~~v~~lr~~~--p~~~ldvHLmv~--~p~~~i~~~~~a---GAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gv 139 (246)
T 3inp_A 67 VPNLTFGPMVLKALRDYG--ITAGMDVHLMVK--PVDALIESFAKA---GATSIVFHPEASEHIDRSLQLIKSFGIQAGL 139 (246)
T ss_dssp SSCBCCCHHHHHHHHHHT--CCSCEEEEEECS--SCHHHHHHHHHH---TCSEEEECGGGCSCHHHHHHHHHTTTSEEEE
T ss_pred CcchhcCHHHHHHHHHhC--CCCeEEEEEeeC--CHHHHHHHHHHc---CCCEEEEccccchhHHHHHHHHHHcCCeEEE
Confidence 344678888888888871 011244445433 334455555543 3455666555432 3456667888876422
Q ss_pred EeeeeeecCCCCcHHHHHHcCCCCEEEEECc-----------HHHHHH---HHHhhhcccCCCceEEE---ECHHHHHHH
Q 022128 207 LNTYTTEPVHHVDQTVLKQALSIPVVAVASP-----------SAVRSS---WVNLISDTEQWSNSVAC---IGETTASAA 269 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~-----------s~v~~~---~~~~l~~~~~~~~~i~~---IG~~Ta~~l 269 (302)
.+ .|.. +.+.+...+..+|.|++-|. .+++ . +.++..+. ..+..+.+ |++.|+..+
T Consensus 140 -al---np~T-p~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~-KI~~lr~~~~~~-~~~~~I~VDGGI~~~ti~~~ 212 (246)
T 3inp_A 140 -AL---NPAT-GIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLD-KAKEISKWISST-DRDILLEIDGGVNPYNIAEI 212 (246)
T ss_dssp -EE---CTTC-CSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHH-HHHHHHHHHHHH-TSCCEEEEESSCCTTTHHHH
T ss_pred -Ee---cCCC-CHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHH-HHHHHHHHHHhc-CCCeeEEEECCcCHHHHHHH
Confidence 22 1111 11211111346787777553 3333 2 22222221 12355555 568888999
Q ss_pred HHcCCCeEEec----CCCChHHHHHHHHHHHHc
Q 022128 270 KRLGLKNVYYP----THPGLEGWVDSILEALRE 298 (302)
Q Consensus 270 ~~~G~~~~~v~----~~~~~~~ll~~i~~~~~~ 298 (302)
.+.|.+.+++- ..++.++-++.+++.+.+
T Consensus 213 ~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~~ 245 (246)
T 3inp_A 213 AVCGVNAFVAGSAIFNSDSYKQTIDKMRDELNK 245 (246)
T ss_dssp HTTTCCEEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHcCCCEEEEehHHhCCCCHHHHHHHHHHHHhh
Confidence 99999875432 345777778888777654
No 385
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=35.88 E-value=24 Score=30.20 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=33.1
Q ss_pred CccEEEEeChHHHHHHHHHHHHcC-CCCceEEEEChhh----HHHHHHHhhccCCCCceeccC
Q 022128 102 IFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSP 159 (302)
Q Consensus 102 ~~d~IifTS~~av~~f~~~l~~~~-~~~~~i~aVG~~T----a~~l~~~~~~~~~G~~~~~~p 159 (302)
+.|.+||.|||++.---...++.. -.++++++||..- .+.+++. |+--.+++
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~------g~GYIivk 120 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQ------GLGYILVK 120 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHT------TCEEEEET
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhc------CCcEEEEe
Confidence 579999999997643322222211 1467888887655 6777777 77555554
No 386
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=35.83 E-value=1.7e+02 Score=23.41 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=60.8
Q ss_pred EEEEeCCCcc----hhhHHHHHHhCCCeeEEEeeeeeecCCCCcH--HHHHHc--CCCCE--EEEECcHHHHHHHHHhhh
Q 022128 180 TVLYPASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQA--LSIPV--VAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 180 ~vL~~rg~~~----~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~--~~~~~~--~~~d~--ivftS~s~v~~~~~~~l~ 249 (302)
|| .+.++.+ .+.|.+.|++.|++|..+-+|.....+++.- .+.+.. ++.|- ++.-|.-.+- ...+-
T Consensus 23 kI-aIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~s-IaANK-- 98 (166)
T 3s5p_A 23 KV-AFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGIS-IAANK-- 98 (166)
T ss_dssp EE-EEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHHH-HHHHT--
T ss_pred EE-EEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHHH-HHhhc--
Confidence 54 4556655 4567778899999999999988765554431 222222 45663 4444444444 22222
Q ss_pred cccCCCce-EEEECHHHHHHHHHcCC-CeEEecCCCChHHHHHHHHHHH
Q 022128 250 DTEQWSNS-VACIGETTASAAKRLGL-KNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 250 ~~~~~~~~-i~~IG~~Ta~~l~~~G~-~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
..+++ ..|.-+.+|+..++..- +.+....+-.-.+++..|.+.+
T Consensus 99 ---v~GIRAAlc~d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~f 144 (166)
T 3s5p_A 99 ---MKGIRCALCSTEYDAEMARKHNNANALALGGRTTGPEVAASILSRF 144 (166)
T ss_dssp ---STTCCEEECSSHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHH
T ss_pred ---CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHH
Confidence 22444 45778899999888644 4455566666666666665554
No 387
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=35.83 E-value=31 Score=27.46 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=12.5
Q ss_pred HHHHhcCCCccEEEEeChH
Q 022128 94 SSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 94 ~~~l~~l~~~d~IifTS~~ 112 (302)
......+..+|.|||.||.
T Consensus 76 ~~~~~~l~~aD~iI~~sP~ 94 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVTPQ 94 (191)
T ss_dssp HHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEece
Confidence 3344455678888888874
No 388
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=35.59 E-value=29 Score=29.28 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=27.7
Q ss_pred CCCCCCeEEEeCCC-----------------CChHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRER-----------------GKNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~-----------------~~~~~l~~~L~~~G~~v~~~ 79 (302)
+++.|++||||-.. .-...+++.|.+.|++|+.+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999873 35677899999999999864
No 389
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=35.42 E-value=1.4e+02 Score=24.12 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=25.8
Q ss_pred CCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEe
Q 022128 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 47 ~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (302)
.+.|++||||-... =...+++.|.+.|++++.+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAV 37 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 57799999998754 3567888899999987643
No 390
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=35.29 E-value=92 Score=29.57 Aligned_cols=164 Identities=16% Similarity=0.167 Sum_probs=85.3
Q ss_pred CCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHH-HHHHHHHHcCCCC
Q 022128 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-VFLEAWKEAGTPN 128 (302)
Q Consensus 50 g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~-~f~~~l~~~~~~~ 128 (302)
.++||++.+.. +...+.|++. +++...+ ..+.+++.+ .+.++|.++..|..-+. .+++ . .++
T Consensus 4 ~~~vl~~~~~~--~~~~~~l~~~-~~v~~~~------~~~~~~~~~---~~~~~d~li~~~~~~~~~~~l~---~--~~~ 66 (529)
T 1ygy_A 4 LPVVLIADKLA--PSTVAALGDQ-VEVRWVD------GPDRDKLLA---AVPEADALLVRSATTVDAEVLA---A--APK 66 (529)
T ss_dssp CCEEEECSSCC--GGGGTTSCSS-SEEEECC------TTSHHHHHH---HGGGCSEEEECSSSCBCHHHHH---T--CTT
T ss_pred CcEEEEeCCCC--HHHHHHHhcC-ceEEEcC------CCCHHHHHH---HhcCCEEEEEcCCCCCCHHHHh---h--CCC
Confidence 46899987643 2233445443 4444332 122344444 35779999887643321 1222 1 245
Q ss_pred ceEEEE-Chhh----HHHHHHHhhccCCCCceeccCCCc---cHHHHHHh-c--c-------------cC--------CC
Q 022128 129 VRIGVV-GAGT----ASIFEEVIQSSKCSLDVAFSPSKA---TGKILASE-L--P-------------KN--------GK 176 (302)
Q Consensus 129 ~~i~aV-G~~T----a~~l~~~~~~~~~G~~~~~~p~~~---~~e~L~~~-L--~-------------~~--------~~ 176 (302)
+|+++. |-++ -+++.+. |+.+.-.|... .+|..+.. | . .| ..
T Consensus 67 Lk~i~~~~~G~d~id~~~~~~~------gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l 140 (529)
T 1ygy_A 67 LKIVARAGVGLDNVDVDAATAR------GVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEI 140 (529)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCC
T ss_pred CcEEEECCcCcCccCHhHHHhC------CeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCcccc
Confidence 665543 2222 3566777 99887666432 12221111 1 0 11 12
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcH-------HHHHHcCCCCEEEEECcHH
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSA 239 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~-------~~~~~~~~~d~ivftS~s~ 239 (302)
.++++.++.-..-...+...|+..|.+| .+|.+.+...... ..-+.+...|+|++.-|..
T Consensus 141 ~g~~vgIIG~G~IG~~vA~~l~~~G~~V---~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~ 207 (529)
T 1ygy_A 141 FGKTVGVVGLGRIGQLVAQRIAAFGAYV---VAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKT 207 (529)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEE---EEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCc
Confidence 5789999976666777899999999765 4554432100000 0111123568888877653
No 391
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=34.97 E-value=48 Score=24.73 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=27.3
Q ss_pred CCCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEE
Q 022128 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (302)
Q Consensus 45 ~~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~ 77 (302)
..++.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 3679999999997554 46889999999999875
No 392
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}
Probab=34.83 E-value=31 Score=29.49 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=82.8
Q ss_pred ChHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 61 KNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 61 ~~~~l~-~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+..+- ..+++.|++..+.|. ++.+ .+.+.+.+.+ + .++..+-+|-|.=...+ +.+ - . +
T Consensus 14 ~SP~~hn~~~~~~gl~~~Y~~~-~v~~-~~l~~~~~~~-~-~~~~G~nVT~P~K~~v~-~~~-----------d--~-~- 73 (253)
T 3u62_A 14 ISPRLYNEYFKRAGMNHSYGME-EIPP-ESFDTEIRRI-L-EEYDGFNATIPHKERVM-RYV-----------E--P-S- 73 (253)
T ss_dssp SHHHHHHHHHHHHTCCCEEEEE-ECCG-GGHHHHHHHH-H-HHCSEEEECTTCTTGGG-GGS-----------E--E-C-
T ss_pred ccHHHHHHHHHHcCCCCEEEeE-ecCH-HHHHHHHHHH-h-hCCCceeecCChHHHHH-HHh-----------C--C-C-
Confidence 334433 466778887766554 3321 2233333333 2 45778888887544432 111 1 1 1
Q ss_pred HHHHHHhhccCCC-Cceec--cCCCccHHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 140 SIFEEVIQSSKCS-LDVAF--SPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 140 ~~l~~~~~~~~~G-~~~~~--~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
...+.. | ++... ....-|..|+...|.+....+ +++++...+....+...|.+.|+ .++.+|.+.+..
T Consensus 74 ~~A~~i------GAvNTi~~~~G~NTD~~G~~~~l~~~~~~~-~vliiGaGg~a~ai~~~L~~~G~--~~I~v~nR~~~k 144 (253)
T 3u62_A 74 EDAQRI------KAVNCVFRGKGYNTDWVGVVKSLEGVEVKE-PVVVVGAGGAARAVIYALLQMGV--KDIWVVNRTIER 144 (253)
T ss_dssp HHHHHH------TCCCEEETTEEECCHHHHHHHHTTTCCCCS-SEEEECCSHHHHHHHHHHHHTTC--CCEEEEESCHHH
T ss_pred HHHHHc------CcceEeecCEEEcchHHHHHHHHHhcCCCC-eEEEECcHHHHHHHHHHHHHcCC--CEEEEEeCCHHH
Confidence 233333 3 22211 233456778888887654467 99999877777788888999996 335566554311
Q ss_pred -----C-----CcHHHHHHcCCCCEEEEECcHHH
Q 022128 217 -----H-----VDQTVLKQALSIPVVAVASPSAV 240 (302)
Q Consensus 217 -----~-----~~~~~~~~~~~~d~ivftS~s~v 240 (302)
. ...+..+.+.+.|+|+-+.|...
T Consensus 145 a~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm 178 (253)
T 3u62_A 145 AKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGM 178 (253)
T ss_dssp HHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTT
T ss_pred HHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCC
Confidence 0 01112222357899988877654
No 393
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=34.52 E-value=81 Score=31.21 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=55.2
Q ss_pred CCCCCCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEece-EEeeeCCCchHHHHHHhcCCCccEEEEeChHH------
Q 022128 46 ASNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPL-IQHAQGPDTDRLSSVLNADTIFDWIIITSPEA------ 113 (302)
Q Consensus 46 ~~l~g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~-~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a------ 113 (302)
..+.|++|+|.-..+ +.......|++.|++|..+-. .. ...|. .+.. . ....||+||+.....
T Consensus 533 ~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g--~GvD~-t~~~-~-~s~~fDAVvlPGG~~~~~~~~ 607 (688)
T 3ej6_A 533 PTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA--SGVDQ-TYSA-A-DATAFDAVVVAEGAERVFSGK 607 (688)
T ss_dssp SCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC--TTCCE-ETTT-C-CGGGCSEEEECTTCCTTTSTT
T ss_pred CCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC--CCccc-Cccc-C-ChhcCcEEEECCCcccccccc
Confidence 467899998887654 223457899999999987733 21 11121 0111 0 124699999987631
Q ss_pred -----------HHHHHHHHHHcCCCCceEEEEChhhHHHHHHH
Q 022128 114 -----------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 114 -----------v~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
+..|+....+ .++.|++||.+. ..|.+.
T Consensus 608 ~~~d~Lr~~~~a~~fV~e~~~---hgKpIAAIchgp-~lL~~A 646 (688)
T 3ej6_A 608 GAMSPLFPAGRPSQILTDGYR---WGKPVAAVGSAK-KALQSI 646 (688)
T ss_dssp TTCCTTSCTTHHHHHHHHHHH---TTCCEEEEGGGH-HHHHHT
T ss_pred cchhhhccCHHHHHHHHHHHH---cCCEEEEeCccH-HHHHHc
Confidence 2223332222 357899999876 677777
No 394
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=34.39 E-value=1.6e+02 Score=26.87 Aligned_cols=35 Identities=6% Similarity=-0.179 Sum_probs=28.3
Q ss_pred CCCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 022128 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P 80 (302)
..+.|++|+|.-...-...+...+++.|++++.+-
T Consensus 31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d 65 (419)
T 4e4t_A 31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLD 65 (419)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 35679999999876556778899999999988764
No 395
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=34.39 E-value=74 Score=27.84 Aligned_cols=54 Identities=15% Similarity=0.048 Sum_probs=33.0
Q ss_pred cCCCCEEEEECcHHHHHHHHHh--hhcccCCCceEEE--ECHHHHHHHHHcCCCeEEecC
Q 022128 226 ALSIPVVAVASPSAVRSSWVNL--ISDTEQWSNSVAC--IGETTASAAKRLGLKNVYYPT 281 (302)
Q Consensus 226 ~~~~d~ivftS~s~v~~~~~~~--l~~~~~~~~~i~~--IG~~Ta~~l~~~G~~~~~v~~ 281 (302)
+.+.|.++.+.++... +..-. +++. ..+.++++ -.+.-.+.+++.|.+.++.++
T Consensus 175 i~~a~~vi~~~~~d~~-n~~~~~~ar~~-~~~~~iiar~~~~~~~~~l~~~G~d~vi~~~ 232 (336)
T 1lnq_A 175 VRGARAVIVDLESDSE-TIHCILGIRKI-DESVRIIAEAERYENIEQLRMAGADQVISPF 232 (336)
T ss_dssp STTEEEEEECCSSHHH-HHHHHHHHHTT-CTTSEEEEECSSGGGHHHHHHTTCSEEECHH
T ss_pred hhhccEEEEcCCccHH-HHHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHcCCCEEEChh
Confidence 3578888887776554 43322 2222 12345554 467778889999998765444
No 396
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=34.38 E-value=90 Score=27.02 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=54.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Iif-TS~~av~~f~~~l~ 122 (302)
..++|.+..+... .+.+.+.|+++|+++...-.+... ..|.......+.. .+.|.|++ .+...+..+++++.
T Consensus 138 g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~ 215 (368)
T 4eyg_A 138 GIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLA-NPDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFA 215 (368)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSS-SCCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCC-CCcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHH
Confidence 3467766654322 355777889999987654333221 1244333333322 35788887 56666667888888
Q ss_pred HcCCC--CceEEEECh-hhHHHHH
Q 022128 123 EAGTP--NVRIGVVGA-GTASIFE 143 (302)
Q Consensus 123 ~~~~~--~~~i~aVG~-~Ta~~l~ 143 (302)
+.++. +++++..+. .+...++
T Consensus 216 ~~g~~~~~v~~~~~~~~~~~~~~~ 239 (368)
T 4eyg_A 216 ERGLDKSGIKVIGPGDVMDDDLLN 239 (368)
T ss_dssp HTTGGGTTCEEEEETTTTCHHHHT
T ss_pred HcCCCcCCceEEecCcccCHHHHH
Confidence 88764 267777663 3434443
No 397
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=34.00 E-value=70 Score=27.26 Aligned_cols=117 Identities=13% Similarity=-0.029 Sum_probs=65.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
..+.+++.|++..+.++ ++. ..+...+-+.++ ..+++.+.+|-|.=.+. +..+.+. + ...+.
T Consensus 20 h~~~~~~~g~~~~y~~~-~~~-~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~-~~~ld~~-------------~-~~A~~ 81 (271)
T 1nyt_A 20 HQQFAQQLNIEHPYGRV-LAP-INDFINTLNAFF-SAGGKGANVTVPFKEEA-FARADEL-------------T-ERAAL 81 (271)
T ss_dssp HHHHHHHHTCCCCEEEE-ECC-TTCHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE-------------C-HHHHH
T ss_pred HHHHHHHCCCCcEEEEE-EcC-HHHHHHHHHHHH-hCCCCeEEEccCCHHHH-HHHHhhc-------------C-HHHHH
Confidence 44577888998877776 332 223333333332 24789999999966554 3333211 0 11111
Q ss_pred HhhccCCCCceec-------cCCCccHHHHHHhcccCC--CCCCEEEEeCCCcchhhHHHHHHhCCCee
Q 022128 145 VIQSSKCSLDVAF-------SPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (302)
Q Consensus 145 ~~~~~~~G~~~~~-------~p~~~~~e~L~~~L~~~~--~~~~~vL~~rg~~~~~~L~~~L~~~G~~v 204 (302)
. | .++... .....+..+++..|.+.. .++++++++.+.+....+...|.+.|.+|
T Consensus 82 i-g----avNti~~~~~g~l~G~ntD~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V 145 (271)
T 1nyt_A 82 A-G----AVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAV 145 (271)
T ss_dssp H-T----CCSEEEECTTSCEEEECCHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred h-C----CceEEEEcCCCeEEEeCCCHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEE
Confidence 1 0 121111 112245677777765422 25678888877665667788888888654
No 398
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.98 E-value=38 Score=28.49 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=30.5
Q ss_pred HHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEECh
Q 022128 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 93 l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
+.+.++...+.|+|+..+-..+..+.+++.+.|+.++.++..+.
T Consensus 182 ~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d~ 225 (290)
T 2fn9_A 182 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFDG 225 (290)
T ss_dssp HHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCBC
T ss_pred HHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeCC
Confidence 44555444568898888877667778888888775666665554
No 399
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=33.90 E-value=72 Score=27.54 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=43.1
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
.|.+|+++.|.- ..+...++..|+++..+|+-.- ...|.+.+.+.+.+..+...|++++++.
T Consensus 91 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 91 LEAQLVIPELTY--GDGEHFAKIAGMKVTKVKMLDN-WAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp TTCEEEEESSSC--THHHHHHHHTTCEEEEECCCTT-SCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred CCCeEEECCCCc--hHHHHHHHHcCCEEEEecCCCC-CCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 477899998864 3466778889999999887421 1225677877774324678888877753
No 400
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=33.77 E-value=77 Score=28.37 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~ 211 (302)
++++|+++.+......+...+++.|++|..+..+.
T Consensus 13 ~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~ 47 (389)
T 3q2o_A 13 PGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK 47 (389)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 57899999887777788999999999987765543
No 401
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=33.77 E-value=1.4e+02 Score=21.89 Aligned_cols=113 Identities=13% Similarity=0.073 Sum_probs=66.8
Q ss_pred CCCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc---HHHHHHHHHhhhc
Q 022128 177 KKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP---SAVRSSWVNLISD 250 (302)
Q Consensus 177 ~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~---s~v~~~~~~~l~~ 250 (302)
++.+||++..+. .+..|.+.|...|.... +..+ . ...+..+.+ ..+|+|++--. ...- .+++.+++
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~-v~~~-----~-~~~~a~~~l~~~~~dlii~d~~l~~~~g~-~~~~~l~~ 85 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNV-VGEA-----D-DGAAALELIKAHLPDVALLDYRMPGMDGA-QVAAAVRS 85 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHSSEEE-EEEE-----S-SHHHHHHHHHHHCCSEEEEETTCSSSCHH-HHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhCCCeEE-EEEe-----C-CHHHHHHHHHhcCCCEEEEeCCCCCCCHH-HHHHHHHh
Confidence 457899998765 46778888988874211 1111 1 112222222 46888877421 1222 24444444
Q ss_pred ccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 251 TEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 251 ~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
.. ...++++++ +.....+.+.|... ++.+..+.+.|.++|...++..
T Consensus 86 ~~-~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~Kp~~~~~l~~~i~~~~~~~ 136 (152)
T 3eul_A 86 YE-LPTRVLLISAHDEPAIVYQALQQGAAG-FLLKDSTRTEIVKAVLDCAKGR 136 (152)
T ss_dssp TT-CSCEEEEEESCCCHHHHHHHHHTTCSE-EEETTCCHHHHHHHHHHHHHCC
T ss_pred cC-CCCeEEEEEccCCHHHHHHHHHcCCCE-EEecCCCHHHHHHHHHHHHcCC
Confidence 32 245666654 33445566789875 5677789999999999888654
No 402
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.64 E-value=1e+02 Score=25.69 Aligned_cols=89 Identities=11% Similarity=0.043 Sum_probs=53.7
Q ss_pred CCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeC--CCchHHHHHHhcCCCccEEEEeChHHHHHHHHH
Q 022128 50 NPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (302)
Q Consensus 50 g~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~ 120 (302)
.++|++..... ...-+.+.|+++|..+........... ...+.+.+.+..-.+.|+|+.++-..+..+.++
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 204 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQA 204 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 34666655433 223466778888876542222211111 112445666655567899999988888788888
Q ss_pred HHHcCC---CCceEEEEChhh
Q 022128 121 WKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 121 l~~~~~---~~~~i~aVG~~T 138 (302)
+.+.|+ +++.++..+..-
T Consensus 205 l~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 205 LNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp HHHHTCCBTTTBEEEEESCCG
T ss_pred HHHcCCCCCCceEEEEecCch
Confidence 888886 377788777554
No 403
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=33.60 E-value=46 Score=29.79 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh-------HHHHHHHHHHHHcCCCCceEEEEC
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~-------~av~~f~~~l~~~~~~~~~i~aVG 135 (302)
.+.+.|.+.|+++..+.+ .. .+...+.+ .+.++|.|+|-|| ..+..|++.+....+.+.+++++|
T Consensus 271 ~ia~~l~~~g~~v~~~~~---~~-~~~~~~~~---~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 271 ALMDGLVAGGCEVKLFKL---SV-SDRNDVIK---EILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHTTCEEEEEEG---GG-SCHHHHHH---HHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEC---CC-CCHHHHHH---HHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 344556667766543332 21 12233322 3457899999986 257888887766556677777776
No 404
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=33.58 E-value=24 Score=28.88 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=14.2
Q ss_pred HHHHHHHhC--CCcEEEeceEEe
Q 022128 64 KLIKALAKH--RIDCLELPLIQH 84 (302)
Q Consensus 64 ~l~~~L~~~--G~~v~~~P~~~~ 84 (302)
.+.+.+++. |.++..+-+.+.
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~ 46 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRV 46 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSS
T ss_pred HHHHHHHHhCCCCeEEEEECCCC
Confidence 345566665 889888777654
No 405
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=33.41 E-value=55 Score=28.06 Aligned_cols=52 Identities=12% Similarity=0.220 Sum_probs=34.8
Q ss_pred CCCEEEEECcHHHHHH----HHHhhhcccCCCceEEEECHH----HHHHHHHcCCCeEEecCCC
Q 022128 228 SIPVVAVASPSAVRSS----WVNLISDTEQWSNSVACIGET----TASAAKRLGLKNVYYPTHP 283 (302)
Q Consensus 228 ~~d~ivftS~s~v~~~----~~~~l~~~~~~~~~i~~IG~~----Ta~~l~~~G~~~~~v~~~~ 283 (302)
++|.++|.||+.+- - -.+.+.. .+++.++||.. ..+++++.|+--+++...|
T Consensus 64 ~pDfvI~isPN~a~-PGP~~ARE~l~~---~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~Dp 123 (283)
T 1qv9_A 64 EPDFIVYGGPNPAA-PGPSKAREMLAD---SEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDA 123 (283)
T ss_dssp CCSEEEEECSCTTS-HHHHHHHHHHHT---SSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTSC
T ss_pred CCCEEEEECCCCCC-CCchHHHHHHHh---CCCCEEEEcCCcchhhHHHHHhcCCcEEEEecCc
Confidence 89999999998442 1 1122322 25677777543 3788999999887776654
No 406
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=33.27 E-value=1.2e+02 Score=21.03 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=63.4
Q ss_pred CEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC-----cHHHHHHHHHhhhc
Q 022128 179 CTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-----PSAVRSSWVNLISD 250 (302)
Q Consensus 179 ~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS-----~s~v~~~~~~~l~~ 250 (302)
.+||++..+. .+..+.+.|+..|++|. .+. ...+..+.+ ..+|+|++-- ....+ +++.+++
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~---~~~------~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~--~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVD---ETT------DGKGSVEQIRRDRPDLVVLAVDLSAGQNGYL--ICGKLKK 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEE---EEC------CHHHHHHHHHHHCCSEEEEESBCGGGCBHHH--HHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEE---Eec------CHHHHHHHHHhcCCCEEEEeCCCCCCCCHHH--HHHHHhc
Confidence 4788887665 35788888998887653 111 112222222 3688887642 12333 4455544
Q ss_pred cc-CCCceEEEECHHH---HHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 251 TE-QWSNSVACIGETT---ASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 251 ~~-~~~~~i~~IG~~T---a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
.. ....++++++... ...+.+.|... ++.+..+.+.|.+.|...++.
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~-~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 75 DDDLKNVPIVIIGNPDGFAQHRKLKAHADE-YVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp STTTTTSCEEEEECGGGHHHHHHSTTCCSE-EEESSCCHHHHHHHHHHHHCC
T ss_pred CccccCCCEEEEecCCchhHHHHHHhCcch-heeCCCCHHHHHHHHHHHHcC
Confidence 31 2346666664332 33344567765 567777999999999887754
No 407
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.26 E-value=1.4e+02 Score=21.89 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEEC----cHHHHHHHHHhhhc
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS----PSAVRSSWVNLISD 250 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS----~s~v~~~~~~~l~~ 250 (302)
+.+||++..+.. +..+...|...|+.|.. +. ...+....+ ..+|+|++-- ....+ +++.+.+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~---~~------~~~~a~~~l~~~~~dliild~~l~~~~g~~--~~~~l~~ 71 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSS---FA------SATEALAGLSADFAGIVISDIRMPGMDGLA--LFRKILA 71 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEE---ES------CHHHHHHTCCTTCCSEEEEESCCSSSCHHH--HHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEE---EC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHH--HHHHHHh
Confidence 357888877654 57788899988876532 11 122233333 3688877642 22333 3444443
Q ss_pred ccCCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 251 TEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 251 ~~~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
. ...+++++++. .....+.+.|... ++.+..+.+.|.+.|...++
T Consensus 72 ~-~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 72 L-DPDLPMILVTGHGDIPMAVQAIQDGAYD-FIAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp H-CTTSCEEEEECGGGHHHHHHHHHTTCCE-EEESSCCHHHHHHHHHHHHH
T ss_pred h-CCCCCEEEEECCCChHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHHHH
Confidence 2 22466666643 2344555678875 56677789999998887765
No 408
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=33.26 E-value=2.3e+02 Score=24.26 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEec-----------------------eEEeeeCC--CchHHHHHHhcC
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELP-----------------------LIQHAQGP--DTDRLSSVLNAD 100 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P-----------------------~~~~~~~~--~~~~l~~~l~~l 100 (302)
.+.+|+||||-..+. ...+++.|.+.|++|+.+- -+++.... |.+.+.+.+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--- 98 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--- 98 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT---
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh---
Confidence 456899999997653 5668888889999987762 23333322 334455544
Q ss_pred CCccEEEEeCh
Q 022128 101 TIFDWIIITSP 111 (302)
Q Consensus 101 ~~~d~IifTS~ 111 (302)
.++|.||.+..
T Consensus 99 ~~~d~Vih~A~ 109 (351)
T 3ruf_A 99 KGVDHVLHQAA 109 (351)
T ss_dssp TTCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 47899998764
No 409
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=33.10 E-value=1.7e+02 Score=22.57 Aligned_cols=112 Identities=16% Similarity=0.242 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l 121 (302)
+..+++|||.-.... ...+...|+..|+++.. . .+..+..+.+ .-..+|.|+.- ..++.+ +++.+
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~------~--~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~-~~~~l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQ------A--HNKDEALKLA-GAEKFEFITVXLHLGNDSGLS-LIAPL 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEE------E--CSHHHHHHHH-TTSCCSEEEECSEETTEESHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEE------e--CCHHHHHHHH-hhCCCCEEEEeccCCCccHHH-HHHHH
Confidence 455789999876543 45577788888875432 1 2333344444 33568888763 335555 34455
Q ss_pred HHcCCCCceEEEEC-hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 122 KEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 122 ~~~~~~~~~i~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
.+.. ++++++++. ....+...+.++. |.. ++..+..+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~lt~~~~~~~~~~a~~~---Ga~-~~l~KP~~~~~L~~~i~~ 121 (184)
T 3rqi_A 74 CDLQ-PDARILVLTGYASIATAVQAVKD---GAD-NYLAKPANVESILAALQT 121 (184)
T ss_dssp HHHC-TTCEEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHTST
T ss_pred HhcC-CCCCEEEEeCCCCHHHHHHHHHh---CHH-HheeCCCCHHHHHHHHHH
Confidence 5543 466766554 3333333332222 664 466778889999888764
No 410
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=33.05 E-value=37 Score=31.92 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=58.6
Q ss_pred CCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhhcccCCCc
Q 022128 178 KCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLISDTEQWSN 256 (302)
Q Consensus 178 ~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~~~~~~~~ 256 (302)
+-+++++. ....++.|.+..++.|.....+...-. ...+++...+...|+++++|....-..+++.+. .++
T Consensus 406 ~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~----~~~~~~~~~~~~adv~v~ps~~~~g~~~lEAma----~G~ 477 (568)
T 2vsy_A 406 DSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPK----LPHPQYLARYRHADLFLDTHPYNAHTTASDALW----TGC 477 (568)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECC----CCHHHHHHHGGGCSEEECCSSSCCSHHHHHHHH----TTC
T ss_pred CcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCC----CCHHHHHHHHhcCCEEeeCCCCCCcHHHHHHHh----CCC
Confidence 44566665 333456677777777754111111111 111233333467888888884311101122221 256
Q ss_pred eEEE------ECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHH
Q 022128 257 SVAC------IGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALR 297 (302)
Q Consensus 257 ~i~~------IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~ 297 (302)
++++ .+...+..+...|+..++ .+ +.++++++|.+.+.
T Consensus 478 Pvv~~~g~~~~s~~~~~~l~~~g~~e~v-~~--~~~~la~~i~~l~~ 521 (568)
T 2vsy_A 478 PVLTTPGETFAARVAGSLNHHLGLDEMN-VA--DDAAFVAKAVALAS 521 (568)
T ss_dssp CEEBCCCSSGGGSHHHHHHHHHTCGGGB-CS--SHHHHHHHHHHHHH
T ss_pred CEEeccCCCchHHHHHHHHHHCCChhhh-cC--CHHHHHHHHHHHhc
Confidence 7765 144556777788887643 33 88899988887764
No 411
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=32.95 E-value=69 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=38.1
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|++..|.-. .+...++..|+++..+| .|.+.+++.+. .+...|++++++
T Consensus 112 ~gd~vl~~~p~~~--~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~--~~~~~v~~~~p~ 164 (370)
T 2z61_A 112 DGDEVLIQNPCYP--CYKNFIRFLGAKPVFCD-------FTVESLEEALS--DKTKAIIINSPS 164 (370)
T ss_dssp TTCEEEEESSCCT--HHHHHHHHTTCEEEEEC-------SSHHHHHHHCC--SSEEEEEEESSC
T ss_pred CCCEEEEeCCCch--hHHHHHHHcCCEEEEeC-------CCHHHHHHhcc--cCceEEEEcCCC
Confidence 4778999988653 35566788899999888 35566777663 356788888665
No 412
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=32.83 E-value=70 Score=27.25 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=37.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe--------ChHHHHHHHHHHHHcCCCCceEEEEC
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT--------SPEAGSVFLEAWKEAGTPNVRIGVVG 135 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT--------S~~av~~f~~~l~~~~~~~~~i~aVG 135 (302)
.+.+.|++.|++|...-+-+.....+. + .+.+||.|||- +...++.|.+++.. +..++++.
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~~----~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgiH 104 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLTD----E---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVLH 104 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCCH----H---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEEG
T ss_pred HHHHHHhhCCcEEEEEeccCccccCCH----h---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEEc
Confidence 458889999988876432121111111 1 34789999993 35556666665542 45677775
Q ss_pred hhh
Q 022128 136 AGT 138 (302)
Q Consensus 136 ~~T 138 (302)
.++
T Consensus 105 ~a~ 107 (252)
T 1t0b_A 105 SGH 107 (252)
T ss_dssp GGG
T ss_pred ccC
Confidence 553
No 413
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=32.80 E-value=67 Score=25.45 Aligned_cols=79 Identities=13% Similarity=0.034 Sum_probs=46.9
Q ss_pred CeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCh--HHHHHH------HHHHH
Q 022128 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVF------LEAWK 122 (302)
Q Consensus 51 ~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~--~av~~f------~~~l~ 122 (302)
++|.|+.-.+....+.+.|++.|+++..++. .+ .+..+|.||++-. .....+ .+.++
T Consensus 3 p~Igi~~~~~~~~~~~~~l~~~G~~~~~~~~--------~~-------~l~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 67 (191)
T 2ywd_A 3 GVVGVLALQGDFREHKEALKRLGIEAKEVRK--------KE-------HLEGLKALIVPGGESTTIGKLAREYGIEDEVR 67 (191)
T ss_dssp CCEEEECSSSCHHHHHHHHHTTTCCCEEECS--------GG-------GGTTCSEEEECSSCHHHHHHHHHHTTHHHHHH
T ss_pred cEEEEEecCCchHHHHHHHHHCCCEEEEeCC--------hh-------hhccCCEEEECCCChhhhHHhhhhhhHHHHHH
Confidence 5677776555567899999999998876541 11 2456899999976 222211 11222
Q ss_pred HcCCCC-ceEEEEChhhHHHHHHH
Q 022128 123 EAGTPN-VRIGVVGAGTASIFEEV 145 (302)
Q Consensus 123 ~~~~~~-~~i~aVG~~Ta~~l~~~ 145 (302)
+.--.+ ++++.|--+- +.|-..
T Consensus 68 ~~~~~~~~PilGiC~G~-Q~l~~~ 90 (191)
T 2ywd_A 68 KRVEEGSLALFGTCAGA-IWLAKE 90 (191)
T ss_dssp HHHHTTCCEEEEETHHH-HHHEEE
T ss_pred HHHHCCCCeEEEECHHH-HHHHHH
Confidence 111135 7887776654 444443
No 414
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=32.63 E-value=1.3e+02 Score=24.46 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=45.5
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEE----eChHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVFL 118 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~Iif----TS~~av~~f~ 118 (302)
..+.|++||||-.... ...+++.|.+.|++|+.+- ......+.+.+.+.... ....+.+ ++...++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~----r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG----RTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE----SCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe----cCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 4578999999987643 5678899999999876531 10011223333333332 2222222 7888888888
Q ss_pred HHHHHc
Q 022128 119 EAWKEA 124 (302)
Q Consensus 119 ~~l~~~ 124 (302)
+.+.+.
T Consensus 86 ~~~~~~ 91 (247)
T 3i1j_A 86 ARVEHE 91 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877543
No 415
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.63 E-value=53 Score=27.32 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=55.4
Q ss_pred CCeEEEeCCCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHHH
Q 022128 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (302)
Q Consensus 50 g~~IlitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~~ 120 (302)
.++|++..... ...-+.+.|+++|..+...- .....+. ..+.+.|..-.+.|+|+.++-..+..+.++
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 194 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND---YLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGA 194 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC---CCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc---ccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHH
Confidence 34566665443 23446677888888766431 1111121 234555655567899999998888888888
Q ss_pred HHHcCC---CCceEEEEChhh
Q 022128 121 WKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 121 l~~~~~---~~~~i~aVG~~T 138 (302)
+.+.++ .++.++..+..-
T Consensus 195 l~~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 195 ARELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHHHTCCTTTTCEEEEESCCH
T ss_pred HHHcCCCCCCeeEEEEECCch
Confidence 888886 478888887644
No 416
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=32.57 E-value=2.3e+02 Score=24.12 Aligned_cols=174 Identities=10% Similarity=0.025 Sum_probs=86.6
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhh-------------HHHHHHHhhccCCCCc-----eeccCC---
Q 022128 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT-------------ASIFEEVIQSSKCSLD-----VAFSPS--- 160 (302)
Q Consensus 102 ~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~T-------------a~~l~~~~~~~~~G~~-----~~~~p~--- 160 (302)
..|.|++.|....+.+.+.+ +.+..++.++.... ...+++.+ |+. ..++..
T Consensus 136 ~~d~ii~~s~~~~~~~~~~~---~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~G~~~~ 207 (374)
T 2iw1_A 136 KSTKLMMLTDKQIADFQKHY---QTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKN-----GIKEQQNLLLQVGSDFG 207 (374)
T ss_dssp CCCEEEESCHHHHHHHHHHH---CCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHT-----TCCTTCEEEEEECSCTT
T ss_pred CCcEEEEcCHHHHHHHHHHh---CCChhheEEecCCcCHHhcCcccchhHHHHHHHHh-----CCCCCCeEEEEeccchh
Confidence 57899999988888776543 33333444443311 12333332 332 122221
Q ss_pred CccHHHHHHhcccCCCC---CCEEEEeCCCcchhhHHHHHHhCCC--eeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEE
Q 022128 161 KATGKILASELPKNGKK---KCTVLYPASAKASNEIEEGLSNRGF--EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (302)
Q Consensus 161 ~~~~e~L~~~L~~~~~~---~~~vL~~rg~~~~~~L~~~L~~~G~--~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivft 235 (302)
.-..+.|++.+...... +-++++ .|.+..+.+.+..++.|. +|..+. | ..+ +...+...|+++++
T Consensus 208 ~K~~~~li~a~~~l~~~~~~~~~l~i-~G~g~~~~~~~~~~~~~~~~~v~~~g-~-----~~~---~~~~~~~ad~~v~p 277 (374)
T 2iw1_A 208 RKGVDRSIEALASLPESLRHNTLLFV-VGQDKPRKFEALAEKLGVRSNVHFFS-G-----RND---VSELMAAADLLLHP 277 (374)
T ss_dssp TTTHHHHHHHHHTSCHHHHHTEEEEE-ESSSCCHHHHHHHHHHTCGGGEEEES-C-----CSC---HHHHHHHCSEEEEC
T ss_pred hcCHHHHHHHHHHhHhccCCceEEEE-EcCCCHHHHHHHHHHcCCCCcEEECC-C-----ccc---HHHHHHhcCEEEec
Confidence 12345566666544321 224444 444445667777666653 232222 1 122 22223467888887
Q ss_pred CcHH-HHHHHHHhhhcccCCCceEEEEC-HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 236 SPSA-VRSSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 236 S~s~-v~~~~~~~l~~~~~~~~~i~~IG-~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
|-.. .-..+++.+. .++++++.. ....+.+++.+ .-..+++..+.+++.++|.+.+..
T Consensus 278 s~~e~~~~~~~Ea~a----~G~Pvi~~~~~~~~e~i~~~~-~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 278 AYQEAAGIVLLEAIT----AGLPVLTTAVCGYAHYIADAN-CGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp CSCCSSCHHHHHHHH----HTCCEEEETTSTTTHHHHHHT-CEEEECSSCCHHHHHHHHHHHHHC
T ss_pred cccCCcccHHHHHHH----CCCCEEEecCCCchhhhccCC-ceEEeCCCCCHHHHHHHHHHHHcC
Confidence 7210 0001223322 145677654 23455565533 333454455899999999888753
No 417
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=32.56 E-value=31 Score=26.08 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-ccEEEEeChH----------HHHHHHHHHHHcCCCCceEEE
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWIIITSPE----------AGSVFLEAWKEAGTPNVRIGV 133 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~-~d~IifTS~~----------av~~f~~~l~~~~~~~~~i~a 133 (302)
+.+.|++.|+++..+++-+.. ...+.+ +|.|||-+|. .+..|++.+....+.+.++++
T Consensus 21 i~~~l~~~g~~v~~~~~~~~~-----------~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~~fl~~l~~~~l~~k~~~v 89 (147)
T 1f4p_A 21 IARELADAGYEVDSRDAASVE-----------AGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVAC 89 (147)
T ss_dssp HHHHHHHHTCEEEEEEGGGCC-----------STTTTTTCSEEEEEECEECSSSCEECTTTHHHHHTGGGSCCTTCEEEE
T ss_pred HHHHHHhcCCeeEEEehhhCC-----------HHHhcCcCCEEEEEeCCCCCCCcCCChhHHHHHHHHHhcccCCCEEEE
Confidence 444555668776544332221 113567 8999986543 455566655443455667766
Q ss_pred ECh
Q 022128 134 VGA 136 (302)
Q Consensus 134 VG~ 136 (302)
+|-
T Consensus 90 ~~~ 92 (147)
T 1f4p_A 90 FGC 92 (147)
T ss_dssp EEE
T ss_pred Eee
Confidence 654
No 418
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=32.53 E-value=97 Score=27.67 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=48.2
Q ss_pred CCCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEe-ChHH
Q 022128 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (302)
Q Consensus 48 l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~l~~~d~IifT-S~~a 113 (302)
..+++|||+-.....-.+.+.+++.|++++.+-... ..+..|.+.+.+.+ .-.+.|.|+.. +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 457899999877667889999999999998773211 11222344455544 23467888863 4444
Q ss_pred HHHHHHHHHHcCC
Q 022128 114 GSVFLEAWKEAGT 126 (302)
Q Consensus 114 v~~f~~~l~~~~~ 126 (302)
+..+.+.+.+.++
T Consensus 84 ~~~~a~~~~~~gl 96 (403)
T 4dim_A 84 IVSLARICDKENL 96 (403)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCc
Confidence 5555555555543
No 419
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=32.47 E-value=1.6e+02 Score=22.12 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=59.8
Q ss_pred ccEEEEeChHHH-HHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceecc---CCCccHHHHHHhcccCCC-C
Q 022128 103 FDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS---PSKATGKILASELPKNGK-K 177 (302)
Q Consensus 103 ~d~IifTS~~av-~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~---p~~~~~e~L~~~L~~~~~-~ 177 (302)
...+|.-.-... +.+...+.+.|+..+..+.-|...-+.+++. .+...+. =...++-.+++.|..... +
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~------~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG------DFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH------CCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC------CCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 345555443333 3344455555554444444455555555555 5555432 124678888888875432 4
Q ss_pred CCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeeeecCC
Q 022128 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (302)
Q Consensus 178 ~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~ 216 (302)
.-+|+++.+....+...+.++ .|+ .-|-++|..
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~-~Ga-----~~yl~KP~~ 119 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQ-AGV-----NGYIVKPFT 119 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHH-TTC-----CEEEESSCC
T ss_pred CCeEEEEECCCCHHHHHHHHH-CCC-----CEEEECCCC
Confidence 567999999888887777765 574 456666654
No 420
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=32.43 E-value=29 Score=30.78 Aligned_cols=62 Identities=10% Similarity=0.048 Sum_probs=42.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.+.. .+...|++++++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~~v~~~~~~ 148 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVPW-GEVFTPDQVEDAVKR-IRPRLLLTVQGD 148 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecCC-CCCCCHHHHHHHHhh-CCCeEEEEeCCC
Confidence 47789999875433447788889999999988621 111256677777742 256788888843
No 421
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=32.30 E-value=72 Score=27.94 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=80.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeChHH--H--HHHHHHHHH-cCCCCceEEEECh
Q 022128 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--G--SVFLEAWKE-AGTPNVRIGVVGA 136 (302)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~l~~~d~IifTS~~a--v--~~f~~~l~~-~~~~~~~i~aVG~ 136 (302)
-.+.+++.|++...+.+-+.. ..++|.+. ++.....|.|+..-|-- + +..++.+.. ...++. ++
T Consensus 56 k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~KDVDG~-----~~ 127 (286)
T 4a5o_A 56 KRKDCEEVGFLSQAYDLPAET---SQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGF-----HP 127 (286)
T ss_dssp HHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGGGCTTCC-----SH
T ss_pred HHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcccccccC-----Ch
Confidence 345677889988766543221 22344444 44456799999988732 1 122222211 111222 12
Q ss_pred hhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCC--CCCEEEEeC-CCcchhhHHHHHHhCCCeeEEEeeeeee
Q 022128 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (302)
Q Consensus 137 ~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~--~~~~vL~~r-g~~~~~~L~~~L~~~G~~v~~~~vY~~~ 213 (302)
.-...| .. |-. .+.| -|+.+..+.|..... .|++++++. |.....-+...|...|+.|+.+.-+.
T Consensus 128 ~N~g~l--~~-----g~~-~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-- 195 (286)
T 4a5o_A 128 YNIGRL--AQ-----RMP-LLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-- 195 (286)
T ss_dssp HHHHHH--HT-----TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--
T ss_pred hhhHHH--hc-----CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--
Confidence 111111 11 322 2333 467777777765543 789999997 55566778899999999987654221
Q ss_pred cCCCCcHHHHHHcCCCCEEEEECc
Q 022128 214 PVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
....+ .+...|+|+-+.+
T Consensus 196 ---~~L~~---~~~~ADIVI~Avg 213 (286)
T 4a5o_A 196 ---RDLAD---HVSRADLVVVAAG 213 (286)
T ss_dssp ---SCHHH---HHHTCSEEEECCC
T ss_pred ---cCHHH---HhccCCEEEECCC
Confidence 12222 2347788877765
No 422
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=32.18 E-value=2e+02 Score=26.05 Aligned_cols=184 Identities=17% Similarity=0.108 Sum_probs=95.2
Q ss_pred CCCccEEEEeChHH-HHHHHHHHHHcCCCCceEEEEChhhH--HHHHHHhhccCCCCceeccCCCccH-HHHHHhcccCC
Q 022128 100 DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA--SIFEEVIQSSKCSLDVAFSPSKATG-KILASELPKNG 175 (302)
Q Consensus 100 l~~~d~IifTS~~a-v~~f~~~l~~~~~~~~~i~aVG~~Ta--~~l~~~~~~~~~G~~~~~~p~~~~~-e~L~~~L~~~~ 175 (302)
...|+.||+.+... ....++.+++...+.+ + ..|.... ..+... ....+..+.+.+ ...++.|.+..
T Consensus 85 ~~gyk~II~n~~~~~~~~~i~~lkekrvDgI-I-i~~~~~ed~~~i~~~-------~di~V~~Dn~~Ggy~A~~~Li~~G 155 (371)
T 3qi7_A 85 DKEVQAIVVSTDQAGLLPALQKVKEKRPEII-T-ISAPMGDDKNQLSQF-------VDVNLGVSAEERGKVLAERSKEMG 155 (371)
T ss_dssp CTTEEEEEEECSSCCCHHHHHHHHHHCTTSE-E-EESSCCSCHHHHHHH-------SSEEEECCHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEECCCcchHHHHHHHHhcCCCEE-E-Eeccccccchhhccc-------CceEEEeChHHHHHHHHHHHHHCC
Confidence 35789999976541 1334566666555522 2 3333221 122222 222233343333 33446666554
Q ss_pred CCCCEEEEeCCCcc---------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcH----HHHH--------HcCCCCEEEE
Q 022128 176 KKKCTVLYPASAKA---------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ----TVLK--------QALSIPVVAV 234 (302)
Q Consensus 176 ~~~~~vL~~rg~~~---------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~----~~~~--------~~~~~d~ivf 234 (302)
-++|.++.|... ..-+.+.|++.|+.+..... ..+...... +++. .-..+++|..
T Consensus 156 --hk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~--~d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFa 231 (371)
T 3qi7_A 156 --AKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNT--PNINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFG 231 (371)
T ss_dssp --CSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEE--CCCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred --CCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecC--CCCchHHHHHHHHHHHhccccchhhccCCCcEEEE
Confidence 368999988542 22367889999998754421 111111111 1121 0124678777
Q ss_pred ECcHHHHHHHHHhhhcccCCCceE-EEECHHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 235 ASPSAVRSSWVNLISDTEQWSNSV-ACIGETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 235 tS~s~v~~~~~~~l~~~~~~~~~i-~~IG~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
+|=..+. -+++.+.+... .++= .|-+| +-..--.+|+.. .-.+.-+.+.+++.|.+.+.+.+
T Consensus 232 tND~mAi-G~ikal~e~Gi-~VPed~~psp-~~~yp~alg~~~-~~~~~~d~~~i~~~i~~~~~~~g 294 (371)
T 3qi7_A 232 VNEYMDE-VILTKALELKY-IVAEQSNPSP-IQTYPSVMGLKI-SEKDAQNYDKINDMISEKAKAFG 294 (371)
T ss_dssp SSHHHHH-HHHHHHHHHCC-BBCCCSSCCT-TTTHHHHHTCCC-CGGGTTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHH-HHHHHHHHcCC-ccCCCCCCCc-cccCcchhcccc-ChhhccCHHHHHHHHHHHHHhcC
Confidence 7777777 67777665421 0110 01222 333445567763 11245788999999998887654
No 423
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=32.15 E-value=81 Score=23.15 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHhcccCCCCCCEEEEeCCCcch---hhHHHHHHhCCCe
Q 022128 165 KILASELPKNGKKKCTVLYPASAKAS---NEIEEGLSNRGFE 203 (302)
Q Consensus 165 e~L~~~L~~~~~~~~~vL~~rg~~~~---~~L~~~L~~~G~~ 203 (302)
..|.+.+.... ++++|++.|..+.+ ......|+..|++
T Consensus 59 ~~l~~~~~~l~-~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~ 99 (124)
T 3flh_A 59 KDLATRIGELD-PAKTYVVYDWTGGTTLGKTALLVLLSAGFE 99 (124)
T ss_dssp HHHHHHGGGSC-TTSEEEEECSSSSCSHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhcCC-CCCeEEEEeCCCCchHHHHHHHHHHHcCCe
Confidence 44545554433 56788888887776 6788999999974
No 424
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=32.14 E-value=46 Score=28.07 Aligned_cols=75 Identities=13% Similarity=0.028 Sum_probs=44.8
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeChHHHHHHHHHH
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~-~~d~Ii--fTS~~av~~f~~~l 121 (302)
..+.|++||||-.... ...+++.|.+.|++++.+--- .....+.+.+.++..+ +..++. +++...++.+++.+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS---NAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 5678999999987653 567889999999987643210 0001122333333222 222221 37788888888766
Q ss_pred HH
Q 022128 122 KE 123 (302)
Q Consensus 122 ~~ 123 (302)
.+
T Consensus 102 ~~ 103 (271)
T 4iin_A 102 VQ 103 (271)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 425
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=31.73 E-value=2.7e+02 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=27.9
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P 80 (302)
.+.+++|+|.-...-...+...+++.|++++.+.
T Consensus 21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3468899999877667778999999999998765
No 426
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=31.57 E-value=45 Score=28.12 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=59.4
Q ss_pred CccEEEE-eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCE
Q 022128 102 IFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (302)
Q Consensus 102 ~~d~Iif-TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~ 180 (302)
....+.+ .|+.+++..-+.....++.++.+. .|.. +.+...- .....++..+.-.-.+.+.+++.+.....+|++
T Consensus 104 ~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~-~~d~--~~~~~~~-~~~~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~ 179 (249)
T 3g89_A 104 ELELVLVDATRKKVAFVERAIEVLGLKGARAL-WGRA--EVLAREA-GHREAYARAVARAVAPLCVLSELLLPFLEVGGA 179 (249)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCSSEEEE-ECCH--HHHTTST-TTTTCEEEEEEESSCCHHHHHHHHGGGEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCceEEE-ECcH--HHhhccc-ccCCCceEEEECCcCCHHHHHHHHHHHcCCCeE
Confidence 3344444 367777776666666777665444 3332 2221100 000134444332223456666666665557889
Q ss_pred EEEeCCCcch---hhHHHHHHhCCCeeEEEeee
Q 022128 181 VLYPASAKAS---NEIEEGLSNRGFEVVRLNTY 210 (302)
Q Consensus 181 vL~~rg~~~~---~~L~~~L~~~G~~v~~~~vY 210 (302)
+++..|.... ..+.+.++..|+.+.++.-|
T Consensus 180 l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 180 AVAMKGPRVEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEEECSCCHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred EEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 9988886544 34667788889988777666
No 427
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=31.54 E-value=38 Score=29.92 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.|.-....+...++..|+++..+|+-. ....|.+.+++.+... +...|++++++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-~~~~v~~~~~~ 169 (393)
T 1vjo_A 108 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETH-RPAILALVHAE 169 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-CCSEEEEESEE
T ss_pred CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhC-CceEEEEeccC
Confidence 47789998876433347777888999998888632 1113556777776431 45688888774
No 428
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=31.48 E-value=1.6e+02 Score=24.84 Aligned_cols=94 Identities=19% Similarity=0.140 Sum_probs=52.0
Q ss_pred EEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEE-EECcHHHHHHHHHhhhcccCCCce
Q 022128 180 TVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSSWVNLISDTEQWSNS 257 (302)
Q Consensus 180 ~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~iv-ftS~s~v~~~~~~~l~~~~~~~~~ 257 (302)
+.++..+.+ -...+.+.....|.++.-. +++... ..+.+.|+++ ||+|+++. ..++.+.+. +++
T Consensus 14 ~~~v~Ga~GrMG~~i~~~~~~~~~elv~~--id~~~~--------~~l~~~DVvIDFT~P~a~~-~~~~~~~~~---g~~ 79 (228)
T 1vm6_A 14 KYGIVGYSGRMGQEIQKVFSEKGHELVLK--VDVNGV--------EELDSPDVVIDFSSPEALP-KTVDLCKKY---RAG 79 (228)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEE--EETTEE--------EECSCCSEEEECSCGGGHH-HHHHHHHHH---TCE
T ss_pred eeEEEEecCHHHHHHHHHHhCCCCEEEEE--EcCCCc--------ccccCCCEEEECCCHHHHH-HHHHHHHHc---CCC
Confidence 455554322 2233455666777665332 222110 1124689999 99999999 777766553 344
Q ss_pred EEE----ECHHHHHHHHHcCC-CeEEecCCCChHH
Q 022128 258 VAC----IGETTASAAKRLGL-KNVYYPTHPGLEG 287 (302)
Q Consensus 258 i~~----IG~~Ta~~l~~~G~-~~~~v~~~~~~~~ 287 (302)
+++ +.+.-.+.++++.- -.++++++.+..-
T Consensus 80 ~ViGTTG~~~~~~~~l~~~a~~~~vv~apNfSlGv 114 (228)
T 1vm6_A 80 LVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGI 114 (228)
T ss_dssp EEECCCSCCHHHHHHHHHHTTTSEEEECSCCCHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHhhCCEEEeccccHHH
Confidence 433 23444345555322 3567788888853
No 429
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=31.36 E-value=1.9e+02 Score=22.65 Aligned_cols=101 Identities=17% Similarity=0.144 Sum_probs=59.9
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCCCCc--HHHHHHc--CCCC--EEEEECcHHHHHHHHHhhhcccCCCce-EEEEC
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIP--VVAVASPSAVRSSWVNLISDTEQWSNS-VACIG 262 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~--~~~~~~~--~~~d--~ivftS~s~v~~~~~~~l~~~~~~~~~-i~~IG 262 (302)
.+.|.+.|++.|++|..+-+|.....+.+. ..+.+.. ++.| +++.-|.-.+- ...+-+ .+++ ..|.-
T Consensus 15 K~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~s-iaANKv-----~GIRAAl~~d 88 (149)
T 3he8_A 15 KREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGIS-IAANKV-----PGIRAAVCTN 88 (149)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHH-HHHHTS-----TTCCEEECSS
T ss_pred HHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHH-HHhhcC-----CCeEEEEeCC
Confidence 456778889999999999888766544322 1122222 4556 34444444444 322222 2444 45778
Q ss_pred HHHHHHHHHcC-CCeEEecCCCChHHHHHHHHHHH
Q 022128 263 ETTASAAKRLG-LKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 263 ~~Ta~~l~~~G-~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
+.+|...++.. -+.+....+..-.+++..|.+.+
T Consensus 89 ~~sA~~ar~hNnaNVl~lG~rvig~~~A~~iv~~f 123 (149)
T 3he8_A 89 SYMARMSREHNDANILALGERVVGLDLALDIVDTW 123 (149)
T ss_dssp HHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHH
Confidence 88888888864 44455566666666776665554
No 430
>3exc_X Uncharacterized protein; ferredoxin fold, double split beta-alpha-beta fold, dimer, C aspartate, RNA'ASE, hydrolase; 2.25A {Sulfolobus solfataricus} SCOP: d.58.58.0
Probab=31.35 E-value=1.4e+02 Score=21.14 Aligned_cols=50 Identities=18% Similarity=0.240 Sum_probs=33.6
Q ss_pred CCCeEEEeCCCC---ChHHHHHHHHhCCCcEEEeceEEeeeCC-CchHHHHHHh
Q 022128 49 SNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLN 98 (302)
Q Consensus 49 ~g~~IlitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~ 98 (302)
.+|.++|+..-+ ...+..+.|++.|+.-+.-.+++-...+ ....|...|.
T Consensus 2 ~~M~vlV~YDI~~~krr~kv~k~l~~yGl~rvQ~SVFe~~lt~~~~~~L~~~L~ 55 (91)
T 3exc_X 2 QGMKLLVVYDVSDDSKRNKLANNLKKLGLERIQRSAFEGDMDSQRMKDLVRVVK 55 (91)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHHTTCEEEETTEEEEECC--CHHHHHHHHH
T ss_pred CceEEEEEEeCCCchHHHHHHHHHHHhCCccceeeEEEEECCHHHHHHHHHHHH
Confidence 367888887543 3567889999999988899999886443 2344544443
No 431
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=31.32 E-value=55 Score=28.71 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCEEEEeCCCcc-----hhhHHHHHHhCCC-eeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhh
Q 022128 178 KCTVLYPASAKA-----SNEIEEGLSNRGF-EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 178 ~~~vL~~rg~~~-----~~~L~~~L~~~G~-~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~ 249 (302)
+.+|+++.-... .+...+.+++.|+ .|..+.+.++..... ++..+.+.+.|+|+|+-.++.+ .. +.+.
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~--~~~~~~l~~ad~I~v~GGnt~~-l~-~~l~ 129 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDD--SGYRLFVEQCTGIFMTGGDQLR-LC-GLLA 129 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGC--HHHHHHHHHCSEEEECCSCHHH-HH-HHHT
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCC--HHHHHHHhcCCEEEECCCCHHH-HH-HHHH
Confidence 368888754433 2467788888999 677777765542221 2333445678999999999988 43 4443
No 432
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.24 E-value=1.4e+02 Score=21.13 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=64.2
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc---------CCCCEEEEE----CcHHHHHH
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---------LSIPVVAVA----SPSAVRSS 243 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~---------~~~d~ivft----S~s~v~~~ 243 (302)
+.+||++..+.. +..+.+.|+..|+... +..+. ...+..+.+ ..+|+|++- .....+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~-v~~~~------~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-- 72 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE-VVTVR------DGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-- 72 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE-EEEEC------SHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH--
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEC------CHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH--
Confidence 468888877654 6788899998887321 11111 112222222 357877763 223333
Q ss_pred HHHhhhccc-CCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 244 WVNLISDTE-QWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 244 ~~~~l~~~~-~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+++.+++.. ....+++.++ +.....+.+.|... ++.+..+.+.|.+.|...++.
T Consensus 73 ~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~ 131 (140)
T 1k68_A 73 VLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNC-YITKSANLSQLFQIVKGIEEF 131 (140)
T ss_dssp HHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE-EEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhh-eecCCCCHHHHHHHHHHHHHH
Confidence 344444321 1245666553 23455566788875 567778999999988887654
No 433
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*
Probab=31.14 E-value=36 Score=29.60 Aligned_cols=154 Identities=8% Similarity=0.061 Sum_probs=84.2
Q ss_pred ChHHH-HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhH
Q 022128 61 KNGKL-IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (302)
Q Consensus 61 ~~~~l-~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta 139 (302)
.+..+ ...+++.|.+..+.|+ ++.+ .+.+.+.+.+.. .++..+-+|-|.=.+.+ +.+.+. +
T Consensus 14 ~SP~~hn~~f~~~gl~~~Y~~~-~v~~-~~l~~~~~~~~~-~~~~G~nVTiP~K~~v~-~~~d~l-------------~- 75 (277)
T 3don_A 14 LSPLMHHANFQSLNLENTYEAI-NVPV-NQFQDIKKIISE-KSIDGFNVTIPHKERII-PYLDDI-------------N- 75 (277)
T ss_dssp CHHHHHHHHHHHTTCCCEEEEE-ECCG-GGGGGHHHHHHH-TTCSEEEECTTCTTTTG-GGCSEE-------------C-
T ss_pred ccHHHHHHHHHHcCcCcEEEEE-EcCH-HHHHHHHHHHhh-CCCCEEEECcCCHHHHH-HHhhhC-------------C-
Confidence 34443 3577889998776654 3322 233444444433 36889999998654432 222111 1
Q ss_pred HHHHHHhhccCCC-Ccee------ccCCCccHHHHHHhcccCCC--CCCEEEEeCCCcchhhHHHHHHhCCC-eeEEEee
Q 022128 140 SIFEEVIQSSKCS-LDVA------FSPSKATGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGF-EVVRLNT 209 (302)
Q Consensus 140 ~~l~~~~~~~~~G-~~~~------~~p~~~~~e~L~~~L~~~~~--~~~~vL~~rg~~~~~~L~~~L~~~G~-~v~~~~v 209 (302)
...+.. | ++.. +....-+..|++..|.+... .+++++++.+.+....+...|.+.|+ +| .+
T Consensus 76 ~~A~~i------GAVNTv~~~~g~l~G~NTD~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v---~v 146 (277)
T 3don_A 76 EQAKSV------GAVNTVLVKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTL---TV 146 (277)
T ss_dssp HHHHHH------TCCCEEEEETTEEEEECCHHHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCC---EE
T ss_pred HHHHHh------CceeEEEecCCEEEEECChHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEE---EE
Confidence 111222 2 1111 12234567788777765332 57899999877777788899999997 44 45
Q ss_pred eeeecCCC----------CcHHHHHHcCCCCEEEEECcHHHH
Q 022128 210 YTTEPVHH----------VDQTVLKQALSIPVVAVASPSAVR 241 (302)
Q Consensus 210 Y~~~~~~~----------~~~~~~~~~~~~d~ivftS~s~v~ 241 (302)
|.+..... ..++..+.+...|+|+-+.|....
T Consensus 147 ~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~ 188 (277)
T 3don_A 147 ANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMN 188 (277)
T ss_dssp ECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC----
T ss_pred EeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCC
Confidence 55543211 112222224578999988887654
No 434
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=31.04 E-value=54 Score=26.87 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=44.3
Q ss_pred EEEEeCCCcc----h------hhHHHHHHhC--CCeeEEEeeeeeecCCCCc--------------------------HH
Q 022128 180 TVLYPASAKA----S------NEIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QT 221 (302)
Q Consensus 180 ~vL~~rg~~~----~------~~L~~~L~~~--G~~v~~~~vY~~~~~~~~~--------------------------~~ 221 (302)
+||++.|... + +.+.+.|++. |.+|+.+.+|+...+.... .+
T Consensus 6 kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 3p0r_A 6 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADK 85 (211)
T ss_dssp EEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHH
Confidence 6777755432 1 3456777766 8999999998765421111 11
Q ss_pred HHHHcCCCCEEEEEC-------cHHHHHHHHHhhh
Q 022128 222 VLKQALSIPVVAVAS-------PSAVRSSWVNLIS 249 (302)
Q Consensus 222 ~~~~~~~~d~ivftS-------~s~v~~~~~~~l~ 249 (302)
+.+.+...|.|+|.+ |..++ .|++.+.
T Consensus 86 ~~~~~~~aD~iv~~~P~y~~~~p~~lK-~~iD~~~ 119 (211)
T 3p0r_A 86 YLNQFLEADKVVFGFPLWNLTIPAVLH-TYIDYLN 119 (211)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHH-HHHHHHC
T ss_pred HHHHHHhCCEEEEEcChhcccCCHHHH-HHHHHHh
Confidence 122345789999998 57888 8888764
No 435
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=31.03 E-value=68 Score=22.00 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=26.4
Q ss_pred CCCCCCCeEEEeC-CCCChHHHHHHHHhCCCcEE
Q 022128 45 SASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (302)
Q Consensus 45 ~~~l~g~~IlitR-~~~~~~~l~~~L~~~G~~v~ 77 (302)
+..+.|.+|.++. ......++.+.++.+|+.+.
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 3577899999986 34467789999999999975
No 436
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=30.74 E-value=1.3e+02 Score=24.64 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=55.7
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCc
Q 022128 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK 188 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~ 188 (302)
.|+.+++..-+.....++.++.+. .|... .+..... ..+.++..+.-...+.+.+++.+.....+|+.+++..|..
T Consensus 102 ~s~~~~~~a~~~~~~~~~~~v~~~-~~d~~--~~~~~~~-~~~~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~~g~~ 177 (240)
T 1xdz_A 102 SLNKRITFLEKLSEALQLENTTFC-HDRAE--TFGQRKD-VRESYDIVTARAVARLSVLSELCLPLVKKNGLFVALKAAS 177 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCSSEEEE-ESCHH--HHTTCTT-TTTCEEEEEEECCSCHHHHHHHHGGGEEEEEEEEEEECC-
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEE-eccHH--Hhccccc-ccCCccEEEEeccCCHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 467777776666666666554443 44432 2210000 0013444443233455666666666555778888887765
Q ss_pred chh---hHHHHHHhCCCeeEEEeeee
Q 022128 189 ASN---EIEEGLSNRGFEVVRLNTYT 211 (302)
Q Consensus 189 ~~~---~L~~~L~~~G~~v~~~~vY~ 211 (302)
..+ .+.+.++..|+.+.+..-|.
T Consensus 178 ~~~~~~~~~~~l~~~g~~~~~~~~~~ 203 (240)
T 1xdz_A 178 AEEELNAGKKAITTLGGELENIHSFK 203 (240)
T ss_dssp CHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred chHHHHHHHHHHHHcCCeEeEEEEEe
Confidence 444 46677888999887765553
No 437
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=30.72 E-value=2.3e+02 Score=23.54 Aligned_cols=154 Identities=7% Similarity=0.016 Sum_probs=80.5
Q ss_pred eEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEEEEeCCCc-c--hhhHHHHHHhCCCeeEE
Q 022128 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A--SNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 130 ~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~vL~~rg~~-~--~~~L~~~L~~~G~~v~~ 206 (302)
+.+..|+...+.+++.+ ..-+.++++-. +.+..++.+.+. |-.++.+.++. . -..+.+..++.|..+-.
T Consensus 40 pn~t~G~~~v~~lr~~~---~~~~dvhLmv~--dp~~~i~~~~~a---GAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv 111 (231)
T 3ctl_A 40 PNLTLSPFFVSQVKKLA---TKPLDCHLMVT--RPQDYIAQLARA---GADFITLHPETINGQAFRLIDEIRRHDMKVGL 111 (231)
T ss_dssp SCCCBCHHHHHHHHTTC---CSCEEEEEESS--CGGGTHHHHHHH---TCSEEEECGGGCTTTHHHHHHHHHHTTCEEEE
T ss_pred ccchhcHHHHHHHHhcc---CCcEEEEEEec--CHHHHHHHHHHc---CCCEEEECcccCCccHHHHHHHHHHcCCeEEE
Confidence 44667888888888863 11345555433 344444555443 34455555554 2 34566777788876422
Q ss_pred EeeeeeecCCCCcHHHHHH-cCCCCEEEEECcHH-----------HH--HHHHHhhhcccCCCceEEEEC---HHHHHHH
Q 022128 207 LNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSA-----------VR--SSWVNLISDTEQWSNSVACIG---ETTASAA 269 (302)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~-~~~~d~ivftS~s~-----------v~--~~~~~~l~~~~~~~~~i~~IG---~~Ta~~l 269 (302)
.+ . +..+.+.++. +..+|.|++-|..- .+ ..+.+...+. ..+..+.+-| +.|...+
T Consensus 112 -~l---n--p~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~-~~~~~I~VdGGI~~~~~~~~ 184 (231)
T 3ctl_A 112 -IL---N--PETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWRERE-GLEYEIEVDGSCNQATYEKL 184 (231)
T ss_dssp -EE---C--TTCCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHH-TCCCEEEEESCCSTTTHHHH
T ss_pred -EE---E--CCCcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhcc-CCCceEEEECCcCHHHHHHH
Confidence 12 1 1122111221 34678877543221 22 0222222211 1245666644 6788888
Q ss_pred HHcCCCeEEec-C----CCC-hHHHHHHHHHHHHc
Q 022128 270 KRLGLKNVYYP-T----HPG-LEGWVDSILEALRE 298 (302)
Q Consensus 270 ~~~G~~~~~v~-~----~~~-~~~ll~~i~~~~~~ 298 (302)
.+.|...+++- . .++ ...-++.+++.+.+
T Consensus 185 ~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~~~ 219 (231)
T 3ctl_A 185 MAAGADVFIVGTSGLFNHAENIDEAWRIMTAQILA 219 (231)
T ss_dssp HHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHHC
T ss_pred HHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHHHH
Confidence 99999875544 1 235 66677777666553
No 438
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=30.60 E-value=84 Score=26.70 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=49.9
Q ss_pred eChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcc---cCCCCCCEEEEeC
Q 022128 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP---KNGKKKCTVLYPA 185 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~---~~~~~~~~vL~~r 185 (302)
.++.+++..-+.+...++.+.--+..|..-....... .+++.++ .+..++-+.+.|. ... ++...+++.
T Consensus 53 i~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~------~~D~Ivi-agmGg~lI~~IL~~~~~~L-~~~~~lIlq 124 (244)
T 3gnl_A 53 VVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD------AIDTIVI-AGMGGTLIRTILEEGAAKL-AGVTKLILQ 124 (244)
T ss_dssp SSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG------CCCEEEE-EEECHHHHHHHHHHTGGGG-TTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc------cccEEEE-eCCchHHHHHHHHHHHHHh-CCCCEEEEE
Confidence 4667777776666666665433344455432111111 1433332 2222333333332 222 234677788
Q ss_pred CCcchhhHHHHHHhCCCeeEE
Q 022128 186 SAKASNEIEEGLSNRGFEVVR 206 (302)
Q Consensus 186 g~~~~~~L~~~L~~~G~~v~~ 206 (302)
+..+.+.+.+.|.+.|+.+..
T Consensus 125 ~~~~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 125 PNIAAWQLREWSEQNNWLITS 145 (244)
T ss_dssp ESSCHHHHHHHHHHHTEEEEE
T ss_pred cCCChHHHHHHHHHCCCEEEE
Confidence 889999999999999999743
No 439
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=30.60 E-value=45 Score=28.06 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=34.8
Q ss_pred CCeEEEeCC--CCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 022128 50 NPKVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (302)
Q Consensus 50 g~~IlitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS 110 (302)
--+|++.+. ......+.+.|+..|+++..+|.......+ . .+..+|.||++-
T Consensus 12 ~~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~------~---~l~~~Dglil~G 65 (239)
T 1o1y_A 12 HVRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLE------R---PLEEYSLVVLLG 65 (239)
T ss_dssp CCEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCS------S---CGGGCSEEEECC
T ss_pred eeEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccc------c---chhcCCEEEECC
Confidence 457888874 345667889999999988866653211111 1 235689999997
No 440
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=30.58 E-value=49 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=28.1
Q ss_pred CccEEEEeC---------hHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHH
Q 022128 102 IFDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (302)
Q Consensus 102 ~~d~IifTS---------~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~ 144 (302)
+..+||||| .|-++...+.+.+ ..+..+++||.+....+++
T Consensus 104 ~~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~ 153 (311)
T 2xok_G 104 KELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLR 153 (311)
T ss_dssp CEEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHT
T ss_pred ceEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHH
Confidence 346999999 6666655443322 1223399999999999987
No 441
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=30.50 E-value=32 Score=29.59 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=20.6
Q ss_pred CCeEEEeCCCC----ChHH----HHHHHHhCCCcEEEeceEEe
Q 022128 50 NPKVVVTRERG----KNGK----LIKALAKHRIDCLELPLIQH 84 (302)
Q Consensus 50 g~~IlitR~~~----~~~~----l~~~L~~~G~~v~~~P~~~~ 84 (302)
+|+||+.-... .+.. +.+.|++.|.++..+-+.+.
T Consensus 2 MmkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 2 GRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 35666654322 2333 44456778988888777654
No 442
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=30.47 E-value=82 Score=26.82 Aligned_cols=122 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred CccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCCCCCCEE
Q 022128 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTV 181 (302)
Q Consensus 102 ~~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~~~~~~v 181 (302)
+.+|..|.|+..+...+.. -.+.+..+|...+-.+... |.+..++ .....+-...+.+...+|++|
T Consensus 34 ~v~~~~~~~~~~~~~al~~------G~~D~~~~~~~~~~~~~~~------g~~~~i~--~~~~~g~~~lv~~~~LkGK~I 99 (283)
T 3hn0_A 34 KVQVKVVDSPDLAQALLIK------QETDIAVLPMINAANLYNK------GIKIKLA--GCPIWGTLYLVEKTPLKEPAL 99 (283)
T ss_dssp EEEEEEESCHHHHHHHHHT------TCCSEEEEEHHHHHHHHHT------TCSCEEE--EEEECCCCEEEECSSCCSCCE
T ss_pred cEEEEEeCCHHHHHHHHHC------CCCCEEEEcHHHHHHHHHC------CCCeEEE--EEecccEEEEEecCCCCCCEE
Q ss_pred EEe-CCCcchhhHHHHHHhCCCeeEEEeeeeeecCCCC--cHHHHHHc--CCCCEEEEECcHHHHHHHHH
Q 022128 182 LYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQA--LSIPVVAVASPSAVRSSWVN 246 (302)
Q Consensus 182 L~~-rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~--~~~~~~~~--~~~d~ivftS~s~v~~~~~~ 246 (302)
.++ +|....-.|...|++.|. +....... ..++...+ +++|+++..-|.... ...+
T Consensus 100 av~~~gs~~~~ll~~~L~~~Gl--------dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~-a~~~ 160 (283)
T 3hn0_A 100 YVFGNGTTPDILTRYYLGRQRL--------DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSI-ALRK 160 (283)
T ss_dssp ECSSTTSHHHHHHHHHHHHHTC--------CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHH-HHHH
T ss_pred EecCCCCcHHHHHHHHHHHcCC--------ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHH-HHhh
No 443
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=30.36 E-value=2.7e+02 Score=24.06 Aligned_cols=174 Identities=15% Similarity=0.110 Sum_probs=87.7
Q ss_pred eEEEeCCCCC-hHHHHHHHHhCCCcEEEeceE------EeeeCCCchHHHHHHhcCCCccEE-EEeChHHHHHHHHHHHH
Q 022128 52 KVVVTRERGK-NGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAWKE 123 (302)
Q Consensus 52 ~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~------~~~~~~~~~~l~~~l~~l~~~d~I-ifTS~~av~~f~~~l~~ 123 (302)
+|+|.-..++ .....+.|.+.|++ ...|+- ++...+-+..+.+..... ..|.+ +||.+..+....+.+.+
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~i~G~~vy~sl~el~~~~-~~Dv~ii~vp~~~~~~~v~ea~~ 92 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQNVHGVPVFDTVKEAVKET-DANASVIFVPAPFAKDAVFEAID 92 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCEETTEEEESSHHHHHHHH-CCCEEEECCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCceECCEeeeCCHHHHhhcC-CCCEEEEccCHHHHHHHHHHHHH
Confidence 4666444332 44577788888988 322321 110001123344444211 35554 57888888777777777
Q ss_pred cCCCCceEEEECh---------hhHHHHHHHhhccCCCCceeccCCCc---cH-HHHHHhcccCCCCCCEEEEeC-CCcc
Q 022128 124 AGTPNVRIGVVGA---------GTASIFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPA-SAKA 189 (302)
Q Consensus 124 ~~~~~~~i~aVG~---------~Ta~~l~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~r-g~~~ 189 (302)
.+ ++.++++. .-.+++++. |+.+ +.|... +. ..+.-.++....+.++|-++. +..-
T Consensus 93 ~G---i~~vVi~t~G~~~~~~~~l~~~A~~~------gi~v-iGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l 162 (294)
T 2yv1_A 93 AG---IELIVVITEHIPVHDTMEFVNYAEDV------GVKI-IGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTL 162 (294)
T ss_dssp TT---CSEEEECCSCCCHHHHHHHHHHHHHH------TCEE-ECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCSHH
T ss_pred CC---CCEEEEECCCCCHHHHHHHHHHHHHc------CCEE-EcCCCceeeccCcceeeecccCCCCCCCEEEEECCHHH
Confidence 54 45333332 223344455 7754 334311 11 111111222212335665553 3333
Q ss_pred hhhHHHHHHhCCCeeEEEeeeeeecCC-CCcHHHHHHc---CCCCEEEEECc
Q 022128 190 SNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQA---LSIPVVAVASP 237 (302)
Q Consensus 190 ~~~L~~~L~~~G~~v~~~~vY~~~~~~-~~~~~~~~~~---~~~d~ivftS~ 237 (302)
...+.+.+..+|.-+..+.-.=..+.. ....++++.+ .+-++|++...
T Consensus 163 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E 214 (294)
T 2yv1_A 163 TYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGE 214 (294)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEE
T ss_pred HHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEe
Confidence 456777888888888777666665532 2334455544 35667777765
No 444
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=30.31 E-value=3e+02 Score=24.63 Aligned_cols=80 Identities=10% Similarity=0.068 Sum_probs=46.1
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCCcEEEece-----------E-EeeeCC---CchHHHHHHh---cCCCccEEEE
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------I-QHAQGP---DTDRLSSVLN---ADTIFDWIII 108 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~-~~~~~~---~~~~l~~~l~---~l~~~d~Iif 108 (302)
..++|+|+|.-.........+..++.|++++.+-- . +..+.+ |.+.+.+.+. .-..+|+|+.
T Consensus 2 ~~~~k~l~Il~~~~~~~~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~ 81 (425)
T 3vot_A 2 TKRNKNLAIICQNKHLPFIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMT 81 (425)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEEC
T ss_pred CCCCcEEEEECCChhHHHHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEE
Confidence 34678899887666667788899999999876510 1 111211 2222222222 2256899987
Q ss_pred eChHHHHHHHHHHHHcCC
Q 022128 109 TSPEAGSVFLEAWKEAGT 126 (302)
Q Consensus 109 TS~~av~~f~~~l~~~~~ 126 (302)
.+=..+..........++
T Consensus 82 ~~e~~~~~~a~l~e~lgl 99 (425)
T 3vot_A 82 LFEPALPFTAKAAEALNL 99 (425)
T ss_dssp CCGGGHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHHcCC
Confidence 776666544333333343
No 445
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=30.30 E-value=1.6e+02 Score=28.38 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=55.2
Q ss_pred CCCeEEEeCCCCC-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-----HHHHHH
Q 022128 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFL 118 (302)
Q Consensus 49 ~g~~IlitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-----av~~f~ 118 (302)
.+.+||+..+.++ ..-+...|+.+|++|+.+-.- +| .+.+.+... -.+.|.|.+++.. .+..+.
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~--vP---~e~iv~aa~-~~~~diVgLS~l~t~~~~~m~~~i 170 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVM--VP---AEKILRTAK-EVNADLIGLSGLITPSLDEMVNVA 170 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSS--BC---HHHHHHHHH-HHTCSEEEEECCSTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHH-HcCCCEEEEEecCCCCHHHHHHHH
Confidence 3567777765443 234556789999999987653 22 234444442 2467888887633 234456
Q ss_pred HHHHHcCCCCceEEEEChhhHHHH
Q 022128 119 EAWKEAGTPNVRIGVVGAGTASIF 142 (302)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~l 142 (302)
+.+++.+. ++++++-|..+.+..
T Consensus 171 ~~Lr~~g~-~i~ViVGGa~~~~~~ 193 (579)
T 3bul_A 171 KEMERQGF-TIPLLIGGATTSKAH 193 (579)
T ss_dssp HHHHHTTC-CSCEEEESTTCCHHH
T ss_pred HHHHHcCC-CCeEEEEccccchhh
Confidence 66666665 799999998766543
No 446
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=30.27 E-value=2e+02 Score=22.73 Aligned_cols=96 Identities=7% Similarity=0.082 Sum_probs=51.7
Q ss_pred CCCCCCeEEEeCCCCC-h---HHHHHHHHhCCCcEEEeceEE---eee-------CCCchHHHHHHhcCCCccEEEEeCh
Q 022128 46 ASNSNPKVVVTRERGK-N---GKLIKALAKHRIDCLELPLIQ---HAQ-------GPDTDRLSSVLNADTIFDWIIITSP 111 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~---~~l~~~L~~~G~~v~~~P~~~---~~~-------~~~~~~l~~~l~~l~~~d~IifTS~ 111 (302)
....+++|+|.-..+- . ....+.|+..|+++..+-.-. +.. .++. .+.+ + +..+||.||+...
T Consensus 19 ~~~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~-~l~~-~-~~~~~D~livpGG 95 (193)
T 1oi4_A 19 KAGLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDK-SIDE-V-TPAEFDALLLPGG 95 (193)
T ss_dssp TTTCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCE-EGGG-C-CGGGCSEEEECCB
T ss_pred hhccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCC-ChHH-C-CcccCCEEEECCC
Confidence 3444678887765432 2 235678899998887664321 110 0111 1111 0 1247999999987
Q ss_pred HHHHHH------HHHHHHcCCCCceEEEEChhhHHHHHHH
Q 022128 112 EAGSVF------LEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 112 ~av~~f------~~~l~~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
.+.+.+ .+.+++....+.++++|..+. ..|.+.
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~-~lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGP-QLLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHHTTCCEEEETTTH-HHHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHHcCCEEEEECHHH-HHHHHC
Confidence 555332 122222212466788887766 456666
No 447
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=30.23 E-value=86 Score=24.74 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=33.6
Q ss_pred hHHHHHHh-CCCeeEEEeeeeeecC----------CC-CcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhhh
Q 022128 192 EIEEGLSN-RGFEVVRLNTYTTEPV----------HH-VDQTVLKQALSIPVVAVASP-------SAVRSSWVNLIS 249 (302)
Q Consensus 192 ~L~~~L~~-~G~~v~~~~vY~~~~~----------~~-~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l~ 249 (302)
.+.+.|.+ .|++|+.+.+++..+. .. .... ...+...|.|+|.|| ..++ .|++.+.
T Consensus 21 ~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~aD~ii~gsP~y~~~~~~~lk-~~ld~~~ 95 (198)
T 3b6i_A 21 AVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVAT-PQELADYDAIIFGTPTRFGNMSGQMR-TFLDQTG 95 (198)
T ss_dssp HHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCC-GGGGGGCSEEEEEEEEETTEECHHHH-HHHTTCH
T ss_pred HHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhh-HHHHHHCCEEEEEeChhcCCchHHHH-HHHHHhh
Confidence 45666776 7888777777654110 00 0000 223567899999986 4677 7877764
No 448
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=30.22 E-value=75 Score=27.01 Aligned_cols=84 Identities=19% Similarity=0.175 Sum_probs=50.4
Q ss_pred CeEEEeCCCCC-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeChHHHHHHHH
Q 022128 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (302)
Q Consensus 51 ~~IlitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~l~~~d~IifTS~~av~~f~~ 119 (302)
++|++...... ..-+.+.|++.|+++.. .+. ...+. ..+.+.+..-.+.|+|+..+-..+..+.+
T Consensus 124 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~ 199 (313)
T 2h3h_A 124 GKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILN--DEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQAL 199 (313)
T ss_dssp SEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEE--CSSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHH
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eec--CCCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHH
Confidence 56766554321 23356677778877653 111 11121 23445554445689999888766667788
Q ss_pred HHHHcCCC-CceEEEEChhh
Q 022128 120 AWKEAGTP-NVRIGVVGAGT 138 (302)
Q Consensus 120 ~l~~~~~~-~~~i~aVG~~T 138 (302)
++.+.|.+ ++.++..+...
T Consensus 200 al~~~G~p~dv~vvg~d~~~ 219 (313)
T 2h3h_A 200 VVKNAGKVGKVKIVCFDTTP 219 (313)
T ss_dssp HHHHTTCTTTSEEEEECCCH
T ss_pred HHHHcCCCCCeEEEEeCCCH
Confidence 88888753 67777777654
No 449
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.04 E-value=1.5e+02 Score=21.11 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=62.0
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe---------ChHHHHHHHH
Q 022128 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT---------SPEAGSVFLE 119 (302)
Q Consensus 50 g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT---------S~~av~~f~~ 119 (302)
.++||+.-.... ...+...|++.|+++..+ .+..+..+.+.. ..+|.|++- ..++.+ +++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~-~~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLF-WLH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHH-HHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHH-HHH
Confidence 568888876543 455777888888765422 233334444433 458888875 234444 455
Q ss_pred HHHHcCCCCceEEEEChh-hHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccC
Q 022128 120 AWKEAGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (302)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~-Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~ 174 (302)
.+.+. .++++++++... ......+.+.. |.. ++..+..+.+.|...+...
T Consensus 73 ~l~~~-~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 73 EIKRQ-YRDLPVVLFTAYADIDLAVRGIKE---GAS-DFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHH-CTTCCEEEEEEGGGHHHHHHHHHT---TCC-EEEEESCCHHHHHHHHHHH
T ss_pred HHHhh-CcCCCEEEEECCCCHHHHHHHHHc---Cch-heeeCCCCHHHHHHHHHHH
Confidence 55554 346677666543 33333333221 654 3556667788887777543
No 450
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.81 E-value=81 Score=26.28 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=53.6
Q ss_pred CCCeEEEeCCCC-------ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHH
Q 022128 49 SNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l 121 (302)
..++|++..... +..-+.+.|+++|..+... .... . .+.+.+.+.+....+.|+|+..+-..+....+++
T Consensus 121 G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~-~-~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al 197 (277)
T 3hs3_A 121 KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPE-N-NPYISAQSALNKSNQFDAIITVNDLYAAEIIKEA 197 (277)
T ss_dssp TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCS-S-CHHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccC-C-chHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHH
Confidence 345677664332 2344667888999877654 2211 1 1134455666444678999988888777788888
Q ss_pred HHcCC---CCceEEEEChh
Q 022128 122 KEAGT---PNVRIGVVGAG 137 (302)
Q Consensus 122 ~~~~~---~~~~i~aVG~~ 137 (302)
.+.|+ +++.++..+..
T Consensus 198 ~~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 198 KRRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp HHTTCCTTTTCEEECSBCC
T ss_pred HHcCCCCCCceEEEeeCCc
Confidence 88886 36666665544
No 451
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=29.76 E-value=1.6e+02 Score=25.77 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=9.1
Q ss_pred eEEEECHHHHHHHHH
Q 022128 257 SVACIGETTASAAKR 271 (302)
Q Consensus 257 ~i~~IG~~Ta~~l~~ 271 (302)
-++++.+...+.++.
T Consensus 209 g~~~~~~~~~~~~~~ 223 (411)
T 3nnk_A 209 SPITLSARMEEAIRR 223 (411)
T ss_dssp EEEEECHHHHHHHHT
T ss_pred EEEEECHHHHHHHhh
Confidence 355566666666654
No 452
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=29.66 E-value=1.2e+02 Score=25.34 Aligned_cols=74 Identities=14% Similarity=-0.014 Sum_probs=41.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-Cc----hHHHHHHhcCCCccE--EEEeChHHHHHHHHHHHHcCCC--CceEEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGP-DT----DRLSSVLNADTIFDW--IIITSPEAGSVFLEAWKEAGTP--NVRIGV 133 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~~----~~l~~~l~~l~~~d~--IifTS~~av~~f~~~l~~~~~~--~~~i~a 133 (302)
.-+.+.|+++|+.- ..++...... +. ..+.+.|..-.+.++ |+..+-..+...++++.+.++. ++.++.
T Consensus 153 ~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 153 TGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEE
Confidence 44677888887531 1122222211 21 234555655566787 5555555566677888888874 666666
Q ss_pred EChhh
Q 022128 134 VGAGT 138 (302)
Q Consensus 134 VG~~T 138 (302)
.+...
T Consensus 231 ~D~~~ 235 (306)
T 8abp_A 231 INGVD 235 (306)
T ss_dssp ESSGG
T ss_pred eCcHH
Confidence 65544
No 453
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=29.62 E-value=1.3e+02 Score=25.94 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=22.2
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
++.+++||||-..+. ...+.+.|.+.|+++..+
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence 455788999987653 556888888889887654
No 454
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=29.60 E-value=2.2e+02 Score=22.86 Aligned_cols=114 Identities=12% Similarity=0.086 Sum_probs=59.1
Q ss_pred eEEEeCCC-------CChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHc
Q 022128 52 KVVVTRER-------GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (302)
Q Consensus 52 ~IlitR~~-------~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~ 124 (302)
.|++.|.- -.-.+|.+.|++.|++=+ ++- | .-..|||+|......+...+
T Consensus 7 yiaLLRGINVGG~nkv~MadLr~~l~~lGf~~V-----~Ty-----------I----~SGNvvF~s~~~~~~l~~~i--- 63 (183)
T 2hiy_A 7 YALLVRGINVGGKNKVVMAELRQELTNLGLEKV-----ESY-----------I----NSGNIFFTSIDSKAQLVEKL--- 63 (183)
T ss_dssp EEEECSSCSCC-CCCCCHHHHHHHHHHHTCEEE-----EEE-----------T----TTTEEEEEECSCHHHHHHHH---
T ss_pred hhhhccceecCCCCcccHHHHHHHHHHcCCccc-----eEE-----------E----ecCCEEEecCCCHHHHHHHH---
Confidence 47788853 135788899999987542 111 1 12468998875433333222
Q ss_pred CCCCceEEEEChhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC------CCCCEEEEeCCCcchhhHHHHHH
Q 022128 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG------KKKCTVLYPASAKASNEIEEGLS 198 (302)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~------~~~~~vL~~rg~~~~~~L~~~L~ 198 (302)
.+++++.| |+.+.+. -.+.+.|.+.+.... .....++++......+.+.+.|.
T Consensus 64 --------------e~~l~~~f-----g~~v~v~--vrs~~el~~i~~~~Pf~~~~~~~~~~v~F~~~~~~~~~~~~~l~ 122 (183)
T 2hiy_A 64 --------------ETFFAVHY-----PFIQSFS--LLSLEDFEAELENLPAWWSRDLARKDFLFYTEGLDVDQVIATVE 122 (183)
T ss_dssp --------------HHHHHHHC-----TTCCCCE--EEEHHHHHHHHTTCCGGGGSCCSEEEEEEECTTCCHHHHHHHHH
T ss_pred --------------HHHHHHhc-----CCCCCEE--EecHHHHHHHHHhCCCCccCCCcEEEEEEECCCCChHHHHHHhh
Confidence 23344433 5544322 223444433332211 01124777777777777777777
Q ss_pred hCCCeeEEEee
Q 022128 199 NRGFEVVRLNT 209 (302)
Q Consensus 199 ~~G~~v~~~~v 209 (302)
......+++.+
T Consensus 123 ~~~~~~E~~~~ 133 (183)
T 2hiy_A 123 SLELKDEVLYF 133 (183)
T ss_dssp TSCCCSEEEEE
T ss_pred ccCCCCeEEEE
Confidence 55444444443
No 455
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=29.41 E-value=1.1e+02 Score=27.25 Aligned_cols=32 Identities=3% Similarity=0.123 Sum_probs=24.7
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEec
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P 80 (302)
.+++|||+-.......+...+++.|++++.+-
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVD 41 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence 46799999654446778899999999887653
No 456
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=29.32 E-value=1.6e+02 Score=21.06 Aligned_cols=111 Identities=12% Similarity=0.066 Sum_probs=67.3
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHh-CCCe-eEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhh
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSN-RGFE-VVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLI 248 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~-~G~~-v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l 248 (302)
..+||++..+.. +..+.+.|.. .|+. |.... ...+..+.+ ..+|+|++--. ...+ +++.+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---------~~~~a~~~l~~~~~dlii~d~~l~~~~g~~--~~~~l 76 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAY---------NPFDAGDLLHTVKPDVVMLDLMMVGMDGFS--ICHRI 76 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEEC---------SHHHHHHHHHHTCCSEEEEETTCTTSCHHH--HHHHH
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEEC---------CHHHHHHHHHhcCCCEEEEecccCCCcHHH--HHHHH
Confidence 468998877654 5678888988 8876 32211 112222222 46888887532 2333 44445
Q ss_pred hcc-cCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHccC
Q 022128 249 SDT-EQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREHG 300 (302)
Q Consensus 249 ~~~-~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~~ 300 (302)
++. ....+++++++ ......+.+.|... ++.+..+.+.|.+.|...++.+.
T Consensus 77 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 77 KSTPATANIIVIAMTGALTDDNVSRIVALGAET-CFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp HTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHHHHTTC
T ss_pred HhCccccCCcEEEEeCCCCHHHHHHHHhcCCcE-EEeCCCCHHHHHHHHHHHHHhhc
Confidence 442 12346777664 33345566788875 56677899999999999887554
No 457
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.30 E-value=61 Score=25.08 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=24.8
Q ss_pred cCCCccEEEEeChH-H-------HHHHHHHHHHcCCCCceEEEECh
Q 022128 99 ADTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 99 ~l~~~d~IifTS~~-a-------v~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
++.++|.|||-||. . +..|++.+....+.+.+++++|-
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~t 88 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGT 88 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEE
Confidence 45679999998876 2 45566655544556667665554
No 458
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=29.20 E-value=66 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=20.3
Q ss_pred HHHHcCCCCEEEEECcH-------HHHHHHHHhhhc
Q 022128 222 VLKQALSIPVVAVASPS-------AVRSSWVNLISD 250 (302)
Q Consensus 222 ~~~~~~~~d~ivftS~s-------~v~~~~~~~l~~ 250 (302)
+.+.+...|.|+|.||. .++ .|++.+..
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK-~~iD~~~~ 100 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLK-NAIDWLSR 100 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHH-HHHHHHHT
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHH-HHHHHHhh
Confidence 33445688999999874 578 88888764
No 459
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=29.19 E-value=81 Score=31.25 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=56.7
Q ss_pred CCCCCCeEEEeCC--CC----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH-H-----
Q 022128 46 ASNSNPKVVVTRE--RG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-A----- 113 (302)
Q Consensus 46 ~~l~g~~IlitR~--~~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~-a----- 113 (302)
.++.|++|+|.-. .+ +...+...|++.|++|..+-.- .....|. .+.. . +...||+||+.... +
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~-~g~~vD~-t~~~-~-~s~~fDAVvlPGG~~g~~~~~ 600 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAER-XANNVDE-TYSA-S-DAVQFDAVVVADGAEGLFGAD 600 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESS-CCTTCCE-ESTT-C-CGGGCSEEEECTTCGGGCCTT
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEecc-CCccccc-chhc-C-CccccCeEEecCCCccccccc
Confidence 4577899988876 32 3455778899999999877552 1111221 1111 0 22469999998873 2
Q ss_pred --------------------HHHHHHHHHHcCCCCceEEEEChhhHHHHHHH
Q 022128 114 --------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (302)
Q Consensus 114 --------------------v~~f~~~l~~~~~~~~~i~aVG~~Ta~~l~~~ 145 (302)
+..|+....+ .++.|++||.+.. .|.+.
T Consensus 601 ~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap~-vL~~a 648 (688)
T 2iuf_A 601 SFTVEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGSD-ALESG 648 (688)
T ss_dssp TTTCCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGHH-HHHHT
T ss_pred ccccccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchHH-HHHHc
Confidence 2222222222 2678999999875 88888
No 460
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=29.05 E-value=95 Score=26.24 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHH-----HhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEE
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSV-----LNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIG 132 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~-----l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~ 132 (302)
.-+.+.|+++|..+....++......+ ...+.+. |..-.+.|+|+.++-..+..+++++.+.|+ .++.++
T Consensus 151 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 151 EGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 446667888887654222222111000 1234555 544456899988888777777888888875 377777
Q ss_pred EEChhh
Q 022128 133 VVGAGT 138 (302)
Q Consensus 133 aVG~~T 138 (302)
..+...
T Consensus 231 g~D~~~ 236 (303)
T 3kke_A 231 GINTTW 236 (303)
T ss_dssp EESCCH
T ss_pred EEcChh
Confidence 776653
No 461
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=29.04 E-value=2.1e+02 Score=22.55 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=63.2
Q ss_pred CeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCCCCc
Q 022128 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (302)
Q Consensus 51 ~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~~~~ 129 (302)
++||+.-... ....+...|+..|+++..+ .+..+....+ .-..+|.|+....++.+ +++.+.+. ..++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~-~~~~lr~~-~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALS-FVSRIKEK-HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHH-HHHHHHHH-CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHH-HHHHHHhC-CCCC
Confidence 3577766543 3455777888888765421 2333344444 33568999955556665 45556655 3377
Q ss_pred eEEEEChh-hHHHHHHHhhccCCCCceeccCCCc-cHHHHHHhcccCC
Q 022128 130 RIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (302)
Q Consensus 130 ~i~aVG~~-Ta~~l~~~~~~~~~G~~~~~~p~~~-~~e~L~~~L~~~~ 175 (302)
+++++... ......+.+.. |.. ++..+.. +.+.|...+....
T Consensus 70 ~ii~lt~~~~~~~~~~~~~~---Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEEESSCCHHHHHHHHHH---TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred cEEEEECCCCHHHHHHHHHc---CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 77766443 33333332221 664 3566777 8888887776543
No 462
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=29.02 E-value=1.4e+02 Score=26.17 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceE-----EeeeCCCchHHHHHHhcCCCccEEEEeChHH----------
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-----QHAQGPDTDRLSSVLNADTIFDWIIITSPEA---------- 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~-----~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a---------- 113 (302)
.|.+|++..|.- ..+...++..|+++..+|+- .-....|.+.+.+.+.. +...|++++++.
T Consensus 125 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~v~~~~p~nptG~~~~~~~ 200 (407)
T 3nra_A 125 RGDKVAIVQPDY--FANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNNPAGVVYSAEE 200 (407)
T ss_dssp TTCEEEEEESCC--THHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT--TCCEEEEESSCTTTCCCCCHHH
T ss_pred CCCEEEEcCCcc--cchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh--CCcEEEEcCCCCCCCcccCHHH
Q ss_pred HHHHHHHHHHcCC
Q 022128 114 GSVFLEAWKEAGT 126 (302)
Q Consensus 114 v~~f~~~l~~~~~ 126 (302)
++.+.+.+.+++.
T Consensus 201 l~~i~~~~~~~~~ 213 (407)
T 3nra_A 201 IGQIAALAARYGA 213 (407)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCC
No 463
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=28.95 E-value=3.5e+02 Score=24.96 Aligned_cols=126 Identities=10% Similarity=0.111 Sum_probs=68.0
Q ss_pred HHHHHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEeeeee-------------ec-CCCCcHHHHHH--cC
Q 022128 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT-------------EP-VHHVDQTVLKQ--AL 227 (302)
Q Consensus 164 ~e~L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~-------------~~-~~~~~~~~~~~--~~ 227 (302)
.+.+.+.+.....+-+++++..|......+.+.|.+ +++|.-++-=+. +. -+-...+++.+ +.
T Consensus 221 i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~ 299 (461)
T 4g65_A 221 IRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENID 299 (461)
T ss_dssp HHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGG
T ss_pred HHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCch
Confidence 445555555444456799999999998999999975 466644432110 00 01112334443 35
Q ss_pred CCCEEE-EECcHHHHHHHHHhhhcccCCCceEEE-E-CHHHHHHHHHcCCCeEEecCCCChHHHHHHH
Q 022128 228 SIPVVA-VASPSAVRSSWVNLISDTEQWSNSVAC-I-GETTASAAKRLGLKNVYYPTHPGLEGWVDSI 292 (302)
Q Consensus 228 ~~d~iv-ftS~s~v~~~~~~~l~~~~~~~~~i~~-I-G~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i 292 (302)
+.|+++ .|.-.... .+..++.+. ..-.++++ + -+.-...++..|+..++-|..-+...+++.+
T Consensus 300 ~~D~~ia~T~~De~N-i~~~llAk~-~gv~kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i 365 (461)
T 4g65_A 300 QVDVFIALTNEDETN-IMSAMLAKR-MGAKKVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHV 365 (461)
T ss_dssp GCSEEEECCSCHHHH-HHHHHHHHH-TTCSEEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHH
T ss_pred hhcEEEEcccCcHHH-HHHHHHHHH-cCCccccccccccchhhhhhccccceeeCHHHHHHHHHHHHh
Confidence 677544 45555555 555555443 21223333 3 4555555677888876544443444444433
No 464
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=28.93 E-value=1.9e+02 Score=25.13 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeChHH----------HHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSPEA----------GSV 116 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~l~~~d~IifTS~~a----------v~~ 116 (302)
.|.+|++..|.- ..+...++..|+++..+|+-.-. ...|.+.+++.+.. .+...|++++++. ++.
T Consensus 110 ~gd~vl~~~p~y--~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~l~~p~nptG~~~~~~~l~~ 186 (390)
T 1d2f_A 110 TGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLLCSPQNPTGKVWTCDELEI 186 (390)
T ss_dssp TTCEEEEEESCC--HHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred CCCEEEEcCCCc--HHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-CCCeEEEEeCCCCCCCcCcCHHHHHH
Confidence 467899988854 34666778899999998874311 01355677777732 3567888887643 455
Q ss_pred HHHHHHHc
Q 022128 117 FLEAWKEA 124 (302)
Q Consensus 117 f~~~l~~~ 124 (302)
+.+.+.++
T Consensus 187 l~~~~~~~ 194 (390)
T 1d2f_A 187 MADLCERH 194 (390)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 55555554
No 465
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=28.87 E-value=1.6e+02 Score=21.01 Aligned_cols=108 Identities=6% Similarity=0.002 Sum_probs=63.2
Q ss_pred CCEEEEeCCCcc-hhhHHHHHHhCC-CeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEECc----HHHHHHHHHhhh
Q 022128 178 KCTVLYPASAKA-SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP----SAVRSSWVNLIS 249 (302)
Q Consensus 178 ~~~vL~~rg~~~-~~~L~~~L~~~G-~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivftS~----s~v~~~~~~~l~ 249 (302)
..+||++..+.. +..+.+.|+..| ++|... ... .+.++.+ ..+|+|++-.. +..+ +++.++
T Consensus 14 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~---~~~------~~a~~~l~~~~~dlvi~D~~l~~~~g~~--~~~~l~ 82 (135)
T 3snk_A 14 RKQVALFSSDPNFKRDVATRLDALAIYDVRVS---ETD------DFLKGPPADTRPGIVILDLGGGDLLGKP--GIVEAR 82 (135)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTSSEEEEEE---CGG------GGGGCCCTTCCCSEEEEEEETTGGGGST--THHHHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEe---ccH------HHHHHHHhccCCCEEEEeCCCCCchHHH--HHHHHH
Confidence 358999877654 678889999988 765422 111 1111111 46888776421 2222 333343
Q ss_pred cccCCCceEEEEC----HHHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHc
Q 022128 250 DTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPGLEGWVDSILEALRE 298 (302)
Q Consensus 250 ~~~~~~~~i~~IG----~~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~ 298 (302)
+... ..++++++ +.....+.+.|... ++.+..+.+.|...|...++.
T Consensus 83 ~~~~-~~~ii~~s~~~~~~~~~~~~~~g~~~-~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 83 ALWA-TVPLIAVSDELTSEQTRVLVRMNASD-WLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp GGGT-TCCEEEEESCCCHHHHHHHHHTTCSE-EEESSCCHHHHHHHHHHTC--
T ss_pred hhCC-CCcEEEEeCCCCHHHHHHHHHcCcHh-hccCCCCHHHHHHHHHHHhcc
Confidence 3222 45666553 34455566789875 567778999999999877653
No 466
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=28.78 E-value=1.4e+02 Score=25.50 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=23.2
Q ss_pred CCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (302)
.+-.+++||||-..+. ...+++.|.+.|++|+.+
T Consensus 10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 44 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGL 44 (335)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 5667999999987653 456888888899988765
No 467
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=28.64 E-value=46 Score=29.30 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.+.-........++..|+++..+|+-. ....|.+.+++.+.. .+...|++++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~~v~~~~~~ 153 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-DRPFSLETLARAIEL-HQPKCLFLTHGD 153 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-CCCCCHHHHHHHHHh-CCCCEEEEECCC
Confidence 47789999886544333456788899998888622 111245667776632 146788888764
No 468
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=28.59 E-value=2.8e+02 Score=23.77 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=111.9
Q ss_pred CCeEEEeCCCC-ChHHHHHHHHhCCCcEEEeceE------EeeeCCCchHHHHHHhcCCCccEEE-EeChHHHHHHHHHH
Q 022128 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHAQGPDTDRLSSVLNADTIFDWII-ITSPEAGSVFLEAW 121 (302)
Q Consensus 50 g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~~~~~~~~l~~~l~~l~~~d~Ii-fTS~~av~~f~~~l 121 (302)
..+|+|.--.+ ......+.+.+.|++++ .|+- ++...+-+..+.+.+.. ...|.++ ||.+..+......+
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V-~~V~p~~~g~~~~G~~vy~sl~el~~~-~~~D~viI~tP~~~~~~~~~ea 84 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMV-GGVTPGKGGTTHLGLPVFNTVREAVAA-TGATASVIYVPAPFCKDSILEA 84 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEE-EEECTTCTTCEETTEEEESSHHHHHHH-HCCCEEEECCCGGGHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEE-EEeCCCcccceeCCeeccCCHHHHhhc-CCCCEEEEecCHHHHHHHHHHH
Confidence 45788877533 24446666777787733 2211 11000112234444421 1456554 67777776666666
Q ss_pred HHcCCCCceEEEE---ChhhHH--HHHHHhhccCCCCceeccCCCc---cH-HHHHHhcccCCCCCCEEEEeCC-Ccchh
Q 022128 122 KEAGTPNVRIGVV---GAGTAS--IFEEVIQSSKCSLDVAFSPSKA---TG-KILASELPKNGKKKCTVLYPAS-AKASN 191 (302)
Q Consensus 122 ~~~~~~~~~i~aV---G~~Ta~--~l~~~~~~~~~G~~~~~~p~~~---~~-e~L~~~L~~~~~~~~~vL~~rg-~~~~~ 191 (302)
.+.+ ++.+++ |-...+ .+.+..+.. |+.. +.|... +. ..+...++....+.++|-++.- ..-..
T Consensus 85 ~~~G---i~~iVi~t~G~~~~~~~~l~~~A~~~--gv~l-iGPNc~Gi~~p~~~~~~~~~~~~~~~G~i~~vsqSG~l~~ 158 (288)
T 2nu8_A 85 IDAG---IKLIITITEGIPTLDMLTVKVKLDEA--GVRM-IGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTY 158 (288)
T ss_dssp HHTT---CSEEEECCCCCCHHHHHHHHHHHHHH--TCEE-ECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCHHHHH
T ss_pred HHCC---CCEEEEECCCCCHHHHHHHHHHHHHc--CCEE-EecCCcceecCCcceeEecccCCCCCCCEEEEECcHHHHH
Confidence 6654 454443 322222 333322111 7754 334320 11 1111112222223456766643 22234
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecC-CCCcHHHHHHc---CCCCEEEEECcH------HHHHHHHHhhhcccCCCceEE--
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQA---LSIPVVAVASPS------AVRSSWVNLISDTEQWSNSVA-- 259 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~-~~~~~~~~~~~---~~~d~ivftS~s------~v~~~~~~~l~~~~~~~~~i~-- 259 (302)
.+.+.+..+|.-+..+.-.=..+. .....++++.+ .+-++|++.... -++ .|++. .. +++++
T Consensus 159 ~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~-~~~~~-~~----~KPVv~~ 232 (288)
T 2nu8_A 159 EAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAA-AYIKE-HV----TKPVVGY 232 (288)
T ss_dssp HHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHH-HHHHH-HC----CSCEEEE
T ss_pred HHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHH-HHHHh-cC----CCCEEEE
Confidence 566777888888877766666543 22334455544 356788887653 344 45554 11 22333
Q ss_pred EECHHH-----------------------HHHHHHcCCCeEEecCCCChHHHHHHHHHHH
Q 022128 260 CIGETT-----------------------ASAAKRLGLKNVYYPTHPGLEGWVDSILEAL 296 (302)
Q Consensus 260 ~IG~~T-----------------------a~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~ 296 (302)
..|.+. ..++++.|+-++ .+.++|.+.+++.+
T Consensus 233 k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~-----~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 233 IAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTV-----RSLADIGEALKTVL 287 (288)
T ss_dssp EECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEEC-----SSGGGHHHHHHHHC
T ss_pred EeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeEe-----CCHHHHHHHHHHHh
Confidence 234322 346777777542 36677887777654
No 469
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=28.51 E-value=47 Score=29.19 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=40.4
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.+.. .+...|++++++
T Consensus 93 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~~-~~~~~v~~~~~~ 154 (393)
T 2huf_A 93 DGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQSLSLDEIRDALLI-HKPSVLFLTQGD 154 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CCCCCHHHHHHHHhc-cCCcEEEEEccC
Confidence 47789999875433345556677899999888632 111255667776642 146788888765
No 470
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=28.50 E-value=1.7e+02 Score=25.26 Aligned_cols=81 Identities=15% Similarity=-0.009 Sum_probs=50.1
Q ss_pred CCCeEEEeC-CCC-----ChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eChHHHHHHHHHH
Q 022128 49 SNPKVVVTR-ERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (302)
Q Consensus 49 ~g~~IlitR-~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~Iif-TS~~av~~f~~~l 121 (302)
..++|.+.. +.. ..+.+.+.+++.|+++...- +... ..|.......+.. .+.|.|++ .+...+..+++++
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG-DQDFSAQLSVAMS-FNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT-CCCCHHHHHHHHH-TCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC-CccHHHHHHHHHh-cCCCEEEEccchhHHHHHHHHH
Confidence 456777763 222 12456778899999876544 3221 2344433333322 46899998 7777777888989
Q ss_pred HHcCCCCceEEE
Q 022128 122 KEAGTPNVRIGV 133 (302)
Q Consensus 122 ~~~~~~~~~i~a 133 (302)
.+.++. ++++.
T Consensus 225 ~~~g~~-~~~~~ 235 (366)
T 3td9_A 225 RQLGFT-GYILA 235 (366)
T ss_dssp HHTTCC-SEEEE
T ss_pred HHcCCC-ceEEe
Confidence 888774 55544
No 471
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=28.46 E-value=64 Score=26.20 Aligned_cols=49 Identities=10% Similarity=0.060 Sum_probs=34.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeChHHH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l--~~~d~IifTS~~av 114 (302)
..-+.+.|++.|+++.... +++ .|.+.+.+.+.+. .++|.||.|-..++
T Consensus 51 ~~~L~~~L~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 51 GPLVTELLTEAGFVVDGVV---AVE-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHTTEEEEEEE---EEC-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3557789999998877554 332 3456677666543 57999999877765
No 472
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=28.17 E-value=2.7e+02 Score=24.47 Aligned_cols=74 Identities=9% Similarity=0.032 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeee-CCCchHHHHHHhcCCCccEEEE-eCh----------HHHHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPDTDRLSSVLNADTIFDWIII-TSP----------EAGSV 116 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-~~~~~~l~~~l~~l~~~d~Iif-TS~----------~av~~ 116 (302)
.|.+|++..|.- ..+...++..|++++.+|+..-.. ..|.+.+.+.+....+-..+++ ++| .-.+.
T Consensus 130 ~gd~Vlv~~p~y--~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~ 207 (409)
T 4eu1_A 130 NCNRIYGPDVGY--PNHESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQ 207 (409)
T ss_dssp SCCEEEEESSCC--THHHHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHH
T ss_pred CCCEEEEeCCCc--HhHHHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHH
Confidence 468999998864 456778888999999999864210 1155677777754333344544 333 34455
Q ss_pred HHHHHHHc
Q 022128 117 FLEAWKEA 124 (302)
Q Consensus 117 f~~~l~~~ 124 (302)
+.+.+++.
T Consensus 208 i~~~~~~~ 215 (409)
T 4eu1_A 208 VCDVIKRR 215 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
Confidence 55555554
No 473
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=28.12 E-value=1.4e+02 Score=24.02 Aligned_cols=48 Identities=13% Similarity=0.080 Sum_probs=31.4
Q ss_pred CeEEEeCCCCCh-HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 51 PKVVVTRERGKN-GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 51 ~~IlitR~~~~~-~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
++|+|.--..++ .-+.++|++.|+++..+ .+.+. + .++|.||+..+-+
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~--------~~~~~----l---~~~D~lilPG~g~ 51 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTIS--------RDPQV----V---LAADKLFLPGVGT 51 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEE--------CCHHH----H---HHCSEEEECCCSC
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEE--------CCHHH----H---hCCCEEEECCCCC
Confidence 357777654443 56888999999998742 12232 2 3479999987433
No 474
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=28.11 E-value=34 Score=29.88 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=39.2
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~a 113 (302)
.|.+|+++.|.- ..+...++..|+++..+|+..-.. .|.+.+.+.+. .+...|++++++-
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~--~~~~~v~~~~p~n 164 (365)
T 3get_A 105 SKNAFLQAGVTF--AMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK--DEIKLIFLCLPNN 164 (365)
T ss_dssp TTCEEEECSSCC--THHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT--TTEEEEEEESSCT
T ss_pred CCCEEEEeCCCh--HHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC--CCCCEEEEcCCCC
Confidence 578899988864 356667788899999998711111 23345555552 5678888876643
No 475
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=28.10 E-value=1.7e+02 Score=24.59 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHhcC---CCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhh
Q 022128 93 LSSVLNAD---TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 93 l~~~l~~l---~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~T 138 (302)
+.+.+... .+.|+|+.++-..+..+.+++.+.|+ .++.++..+...
T Consensus 179 ~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 230 (306)
T 2vk2_A 179 MESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVP 230 (306)
T ss_dssp HHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCH
T ss_pred HHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCCH
Confidence 44555443 46788888887766667778888775 366676665543
No 476
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.02 E-value=1.8e+02 Score=21.31 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=64.7
Q ss_pred CCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022128 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (302)
Q Consensus 47 ~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l 121 (302)
+..+++||+.-.... ...+...|+..|+++..+ .+..+....+ .-..+|.|++- ..++.+ +++.+
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~l 73 (154)
T 2rjn_A 4 NYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEAL-KGTSVQLVISDMRMPEMGGEV-FLEQV 73 (154)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHH-TTSCCSEEEEESSCSSSCHHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHHH
Confidence 456788998876543 455777888888765421 2333444445 23468988874 234554 45556
Q ss_pred HHcCCCCceEEEEChh-hHHHHHHHhhccCCC-CceeccCCCccHHHHHHhccc
Q 022128 122 KEAGTPNVRIGVVGAG-TASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 122 ~~~~~~~~~i~aVG~~-Ta~~l~~~~~~~~~G-~~~~~~p~~~~~e~L~~~L~~ 173 (302)
.+.. ++++++++... ......+.+.. | .. ++.++..+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~~-~~l~kP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 74 AKSY-PDIERVVISGYADAQATIDAVNR---GKIS-RFLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp HHHC-TTSEEEEEECGGGHHHHHHHHHT---TCCS-EEEESSCCHHHHHHHHHH
T ss_pred HHhC-CCCcEEEEecCCCHHHHHHHHhc---cchh-eeeeCCCCHHHHHHHHHH
Confidence 5543 46777666443 33333333221 4 43 456677788888776653
No 477
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=27.91 E-value=1.1e+02 Score=26.95 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCCChHHHHHHHHhCCC-cEEEeceE----------------------EeeeCCCchHHHHHHhcCCCc
Q 022128 47 SNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLI----------------------QHAQGPDTDRLSSVLNADTIF 103 (302)
Q Consensus 47 ~l~g~~IlitR~~~~~~~l~~~L~~~G~-~v~~~P~~----------------------~~~~~~~~~~l~~~l~~l~~~ 103 (302)
.+.|+++||+-..+-....+..|.+.|+ ++..+--- +..+..+.+.+.+.+ .++
T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l---~~a 227 (315)
T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEI---AES 227 (315)
T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHH---HTC
T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhh---cCC
Q ss_pred cEEEEeCh
Q 022128 104 DWIIITSP 111 (302)
Q Consensus 104 d~IifTS~ 111 (302)
|.||-|+|
T Consensus 228 DiIINaTp 235 (315)
T 3tnl_A 228 VIFTNATG 235 (315)
T ss_dssp SEEEECSS
T ss_pred CEEEECcc
No 478
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.87 E-value=88 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CC--ccEEEEeChHHH
Q 022128 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TI--FDWIIITSPEAG 114 (302)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~~--~d~IifTS~~av 114 (302)
.-+.+.|++.|+++.... +++ .|.+.+.+.+.+. .+ +|.||.|-..++
T Consensus 43 ~~L~~~l~~~G~~v~~~~---iv~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYS---LVP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHTTCEEEEEE---EEC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHCCCEEEEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 457889999999877543 343 3456666666543 44 899998876665
No 479
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=27.84 E-value=49 Score=28.54 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.+..-...+...++..|+++..+|+-. ....|.+.+++.+..-.+...|++++++
T Consensus 79 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (366)
T 1m32_A 79 PQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-VARPDVQAIDAILNADPTISHIAMVHSE 141 (366)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-TSCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-CCCCCHHHHHHHHhcCCCeEEEEEeccc
Confidence 46678877644333345666777899999888632 1113556777777543345678787776
No 480
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.82 E-value=1.7e+02 Score=20.94 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=64.8
Q ss_pred CCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHHHH
Q 022128 49 SNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (302)
Q Consensus 49 ~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l~~ 123 (302)
..++||+.-.... ...+...|++.|+++..+ .+..+..+.+.. ..+|.|++- ..++.+ +++.+.+
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 74 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVS-LIRALRR 74 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 3578998876543 456778889989875322 233334444433 568888874 234554 4555654
Q ss_pred c-CCCCceEEEEChhhHHHH-H-HHhhccCCCCceeccCCCccHHHHHHhccc
Q 022128 124 A-GTPNVRIGVVGAGTASIF-E-EVIQSSKCSLDVAFSPSKATGKILASELPK 173 (302)
Q Consensus 124 ~-~~~~~~i~aVG~~Ta~~l-~-~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~ 173 (302)
. ..++++++++........ . +.++ .|.. ++..+..+.+.|...+..
T Consensus 75 ~~~~~~~~ii~~s~~~~~~~~~~~~~~---~g~~-~~l~kP~~~~~l~~~i~~ 123 (140)
T 3grc_A 75 DSRTRDLAIVVVSANAREGELEFNSQP---LAVS-TWLEKPIDENLLILSLHR 123 (140)
T ss_dssp SGGGTTCEEEEECTTHHHHHHHHCCTT---TCCC-EEECSSCCHHHHHHHHHH
T ss_pred CcccCCCCEEEEecCCChHHHHHHhhh---cCCC-EEEeCCCCHHHHHHHHHH
Confidence 2 235788887776554322 2 2211 1553 356677788888777653
No 481
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=27.67 E-value=92 Score=27.29 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=44.4
Q ss_pred ccHHHHHHhcccCCC--CCCEEEEeCCCc-chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc
Q 022128 162 ATGKILASELPKNGK--KKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (302)
Q Consensus 162 ~~~e~L~~~L~~~~~--~~~~vL~~rg~~-~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~ 237 (302)
-|+++..+.|..... .|++++++.... ....+...|...|+.|+.+.-. .....+. +.+.|+|+-+.+
T Consensus 141 cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-----t~~L~~~---~~~ADIVI~Avg 211 (288)
T 1b0a_A 141 CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRF-----TKNLRHH---VENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSS-----CSCHHHH---HHHCSEEEECSC
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCC-----chhHHHH---hccCCEEEECCC
Confidence 467887777765542 789999986653 4666888999999998776421 1222222 345687776665
No 482
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=27.67 E-value=1.3e+02 Score=24.62 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCcc-------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECcHHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~~-------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~s~v~~~~~~~l~ 249 (302)
.+++|+++--..+ -....+.|+..|+++..+.+.+ ...++..+.+.+.|.|+++-.++.. . ++.++
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~~-l-~~~L~ 98 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTFF-L-LQELK 98 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHHH-H-HHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHHH-H-HHHHH
Confidence 4688888864332 2467889999999877665543 2223333345578999999877776 4 44444
Q ss_pred c
Q 022128 250 D 250 (302)
Q Consensus 250 ~ 250 (302)
+
T Consensus 99 ~ 99 (206)
T 3l4e_A 99 R 99 (206)
T ss_dssp H
T ss_pred H
Confidence 3
No 483
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}
Probab=27.53 E-value=21 Score=31.32 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCEEEEEC---------cHHHHHHHHHhhhcccC--CCceEEEECHHHHHHHHHcCCCeE----EecCCCC---hHHHH
Q 022128 228 SIPVVAVAS---------PSAVRSSWVNLISDTEQ--WSNSVACIGETTASAAKRLGLKNV----YYPTHPG---LEGWV 289 (302)
Q Consensus 228 ~~d~ivftS---------~s~v~~~~~~~l~~~~~--~~~~i~~IG~~Ta~~l~~~G~~~~----~v~~~~~---~~~ll 289 (302)
+..+|+||| .+.++ ...+.+.+... .+..+++||.+....+++.|...+ ...+.|+ ...+.
T Consensus 75 ~~~~IvitsDrGLcG~~N~ni~k-~~~~~i~~~~~~~~~~~~~~iG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~a~~i~ 153 (286)
T 2qe7_G 75 KTGYMVITSDRGLAGPYNANILR-LVSKTIEERHQSKDEYVIFAVGRKGRDFFKKRGYPVVEEVTGISDTPSLTEIQDIA 153 (286)
T ss_dssp SCCCCCCCCTTCCCTHHHHHHHT-GGGTTTTSSCTTSSCCCCCCCSHHHHHHHHSSSSCCSCCCSCCCSSCCSTTTHHHH
T ss_pred cEEEEEEeCCCCcccchhHHHHH-HHHHHHHHhhccCCceEEEEechHHHHHHHHcCCCceeeeccCCCCCCHHHHHHHH
Confidence 456899999 55555 44333432211 245799999999999999887632 1223454 55677
Q ss_pred HHHHHHHH
Q 022128 290 DSILEALR 297 (302)
Q Consensus 290 ~~i~~~~~ 297 (302)
+.+.+.+.
T Consensus 154 ~~i~~~~~ 161 (286)
T 2qe7_G 154 QSAIGMFA 161 (286)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 66666554
No 484
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=27.41 E-value=78 Score=26.27 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=13.6
Q ss_pred CCCEEEEeCCC---cchhhHHHHHHhCCCee
Q 022128 177 KKCTVLYPASA---KASNEIEEGLSNRGFEV 204 (302)
Q Consensus 177 ~~~~vL~~rg~---~~~~~L~~~L~~~G~~v 204 (302)
+++++|+..|. .-...+.+.|.+.|++|
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V 43 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAEL 43 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCE
Confidence 34555555543 22334555555556554
No 485
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=27.31 E-value=1.2e+02 Score=25.39 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=39.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeChHHHHHHHHHHHHcCC---CCceEEEEChhh
Q 022128 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (302)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~l~~~d~IifTS~~av~~f~~~l~~~~~---~~~~i~aVG~~T 138 (302)
-+.+.|+++|..+....++......+ ...+.+.|....+.|+|+.++-..+..+++++.+.|+ +++.++..+...
T Consensus 147 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~ 226 (294)
T 3qk7_A 147 GYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLP 226 (294)
T ss_dssp HHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSC
T ss_pred HHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCcc
Confidence 35566677776543221222111000 1234455544456777777776666666677777665 356666665543
No 486
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=27.28 E-value=2.6e+02 Score=24.33 Aligned_cols=73 Identities=11% Similarity=0.096 Sum_probs=47.5
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeChHH----------HHH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSPEA----------GSV 116 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~l~~~d~IifTS~~a----------v~~ 116 (302)
.|.+|++..|.- ..+...++..|+++..+|+-.-. ...|.+.+++.+.+ .+...|++++++. ++.
T Consensus 112 ~gd~vl~~~p~~--~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 112 PGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD-KNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp TTCEEEECSSCC--THHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC-TTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCEEEEcCCCc--HhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc-CCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 477899988764 33556777889999999875211 01356777777732 3567888877654 555
Q ss_pred HHHHHHHc
Q 022128 117 FLEAWKEA 124 (302)
Q Consensus 117 f~~~l~~~ 124 (302)
+.+.+.+.
T Consensus 189 i~~~~~~~ 196 (399)
T 1c7n_A 189 IKDIVLKS 196 (399)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHc
Confidence 55555554
No 487
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.28 E-value=2.7e+02 Score=23.14 Aligned_cols=62 Identities=6% Similarity=0.094 Sum_probs=33.7
Q ss_pred hHHHHHHHhhccCCCCceeccCCCccHHH---HHHhcccCCCCCCEEEEeCCCcchhhHHHHHHhCCCeeEEEe
Q 022128 138 TASIFEEVIQSSKCSLDVAFSPSKATGKI---LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (302)
Q Consensus 138 Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~---L~~~L~~~~~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~ 208 (302)
..+++++. |+.+.+.....+.+. +.+.+..... .=|++. +....+.+.+.|.+.|+.|..+.
T Consensus 34 i~~~a~~~------g~~~~~~~~~~~~~~~~~~~~~l~~~~v--dGiI~~-~~~~~~~~~~~l~~~~iPvV~i~ 98 (295)
T 3hcw_A 34 ISETCNQH------GYGTQTTVSNNMNDLMDEVYKMIKQRMV--DAFILL-YSKENDPIKQMLIDESMPFIVIG 98 (295)
T ss_dssp HHHHHHTT------TCEEEECCCCSHHHHHHHHHHHHHTTCC--SEEEES-CCCTTCHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHC------CCEEEEEcCCCChHHHHHHHHHHHhCCc--CEEEEc-CcccChHHHHHHHhCCCCEEEEC
Confidence 45667777 888766655444433 3334433221 224443 33334456777888888765443
No 488
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.27 E-value=1.8e+02 Score=21.21 Aligned_cols=114 Identities=7% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCCCeEEEeCCCCC-hHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----ChHHHHHHHHHH
Q 022128 48 NSNPKVVVTRERGK-NGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (302)
Q Consensus 48 l~g~~IlitR~~~~-~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifT----S~~av~~f~~~l 121 (302)
..+++||+.-.... ...+...|++ .|+.++. . ..+..+....+ .-..+|.|++- ..++.+ +++.+
T Consensus 3 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~-----~--~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~l 73 (153)
T 3cz5_A 3 LSTARIMLVDDHPIVREGYRRLIERRPGYAVVA-----E--AADAGEAYRLY-RETTPDIVVMDLTLPGPGGIE-ATRHI 73 (153)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEE-----E--ESSHHHHHHHH-HTTCCSEEEECSCCSSSCHHH-HHHHH
T ss_pred CcccEEEEECCcHHHHHHHHHHHhhCCCcEEEE-----E--eCCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHHH
Confidence 44678888876543 4456667776 5665431 1 12333444445 33468888863 334554 45556
Q ss_pred HHcCCCCceEEEEC-hhhHHHHHHHhhccCCCCceeccCCCccHHHHHHhcccCC
Q 022128 122 KEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (302)
Q Consensus 122 ~~~~~~~~~i~aVG-~~Ta~~l~~~~~~~~~G~~~~~~p~~~~~e~L~~~L~~~~ 175 (302)
.+.. ++.+++++. ........+.++. |.. ++..+..+.+.|...+....
T Consensus 74 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 74 RQWD-GAARILIFTMHQGSAFALKAFEA---GAS-GYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHHC-TTCCEEEEESCCSHHHHHHHHHT---TCS-EEEETTSCTTHHHHHHHHHT
T ss_pred HHhC-CCCeEEEEECCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHHH
Confidence 5543 456666554 3333333333222 654 35566677888877776544
No 489
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=27.24 E-value=2.3e+02 Score=22.39 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCeEEEeCCCCC-hHHHHHHHHhCCCcEEEec-----------eEEeeeC--CCchHHHHHHhcCCCccEEEEeChH---
Q 022128 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELP-----------LIQHAQG--PDTDRLSSVLNADTIFDWIIITSPE--- 112 (302)
Q Consensus 50 g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P-----------~~~~~~~--~~~~~l~~~l~~l~~~d~IifTS~~--- 112 (302)
.|+||||-..+. ...+.+.|.+.|++|..+- -+++... .|.+.+.+.+ .++|.||.....
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~a~~~~~ 80 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC---KGADAVISAFNPGWN 80 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHH---TTCSEEEECCCC---
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHh---cCCCEEEEeCcCCCC
Confidence 478999986543 4668888989998887662 2222222 1334555555 468999887532
Q ss_pred ----------HHHHHHHHHHHcCCCCceEEEECh
Q 022128 113 ----------AGSVFLEAWKEAGTPNVRIGVVGA 136 (302)
Q Consensus 113 ----------av~~f~~~l~~~~~~~~~i~aVG~ 136 (302)
+...+++.+.+.+. .+++-++.
T Consensus 81 ~~~~~~~n~~~~~~l~~~~~~~~~--~~~v~~Ss 112 (227)
T 3dhn_A 81 NPDIYDETIKVYLTIIDGVKKAGV--NRFLMVGG 112 (227)
T ss_dssp ---CCSHHHHHHHHHHHHHHHTTC--SEEEEECC
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCC--CEEEEeCC
Confidence 34555555555432 25555554
No 490
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=27.23 E-value=75 Score=26.70 Aligned_cols=97 Identities=7% Similarity=-0.085 Sum_probs=43.8
Q ss_pred hhhhhCCCCCCCCccccccccccccCCCCCCCeEEEeCCCCC-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh
Q 022128 20 SRLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN 98 (302)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~IlitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~ 98 (302)
+-|--+..+|+.+.+.-... .....+.|++||||-.... ...+++.|.+.|++|+.+-. .+ ...+.+.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r---~~-~~~~~~~~~l~ 76 (272)
T 1yb1_A 4 HHHHHHSSGRENLYFQGHMP---KRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDI---NK-HGLEETAAKCK 76 (272)
T ss_dssp ------------------------CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES---CH-HHHHHHHHHHH
T ss_pred cccccccccchhheeccccC---CcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEc---CH-HHHHHHHHHHH
Confidence 33444556666654444311 1124578999999987653 56788899999998764321 10 01122223332
Q ss_pred cCC-CccEEE--EeChHHHHHHHHHHHH
Q 022128 99 ADT-IFDWII--ITSPEAGSVFLEAWKE 123 (302)
Q Consensus 99 ~l~-~~d~Ii--fTS~~av~~f~~~l~~ 123 (302)
..+ +...+. +++..+++.+++.+.+
T Consensus 77 ~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 77 GLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 221 222222 2677888888776654
No 491
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=27.21 E-value=76 Score=26.42 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=35.4
Q ss_pred EEEEeCCCc--chhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEEC
Q 022128 180 TVLYPASAK--ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (302)
Q Consensus 180 ~vL~~rg~~--~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS 236 (302)
||+++.... +-..+.+.|++.|++++.+.+|.....+.. +.++|.|+++-
T Consensus 2 ~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~-------~~~~d~lii~G 53 (236)
T 3l7n_A 2 RIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKD-------IDDFDMLILMG 53 (236)
T ss_dssp EEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSC-------GGGCSEEEECC
T ss_pred eEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCC-------ccccCEEEECC
Confidence 455665433 346789999999999998888877654431 34789888875
No 492
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=27.05 E-value=44 Score=29.11 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~~~d~IifTS~~ 112 (302)
.|.+|+++.+.-....+...++..|+++..+|+-.- ...|.+.+++.+.. .+...|++++++
T Consensus 76 ~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~i~~-~~~~~v~~~~~~ 137 (384)
T 3zrp_A 76 PNDKILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPG-DYVKPGEVEEEVRK-SEYKLVALTHVE 137 (384)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTTSSCEEEEECCSTT-CCCCHHHHHHHHHH-SCEEEEEEESEE
T ss_pred CCCEEEEecCCcchHHHHHHHHHcCCcEEEecCCCC-CCCCHHHHHHHHHh-CCCcEEEEeCCC
Confidence 477899988754334566667788999999886431 11255677777743 246788888773
No 493
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=26.94 E-value=2.6e+02 Score=22.93 Aligned_cols=110 Identities=10% Similarity=0.080 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCcc-hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEEEE----CcHHHHHHHHHhhh
Q 022128 177 KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA----SPSAVRSSWVNLIS 249 (302)
Q Consensus 177 ~~~~vL~~rg~~~-~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~ivft----S~s~v~~~~~~~l~ 249 (302)
.+.+||++-.+.. +..+.+.|+..|++|.. . .. ..+.++.+ ..+|.|+.= .....+ +.+.++
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~---a-----~~-~~eal~~l~~~~~dlvl~D~~mp~~~G~~--l~~~ir 196 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKT---A-----ND-GVDALNVLSKNHIDIVLSDVNMPNMDGYR--LTQRIR 196 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEE---E-----CC-SHHHHHHHHHSCCSEEEEEESSCSSCCHH--HHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEE---E-----CC-HHHHHHHHHhCCCCEEEEcCCCCCCCHHH--HHHHHH
Confidence 3568998877654 57788889988976531 1 11 12222222 468887753 112222 223333
Q ss_pred cccCCCceEEEECH----HHHHHHHHcCCCeEEecCCCChHHHHHHHHHHHHcc
Q 022128 250 DTEQWSNSVACIGE----TTASAAKRLGLKNVYYPTHPGLEGWVDSILEALREH 299 (302)
Q Consensus 250 ~~~~~~~~i~~IG~----~Ta~~l~~~G~~~~~v~~~~~~~~ll~~i~~~~~~~ 299 (302)
+.. ..+++++++. .....+.+.|... ++.+..+.+.|.+.|..+++.+
T Consensus 197 ~~~-~~~piI~lt~~~~~~~~~~~~~~G~~~-~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 197 QLG-LTLPVIGVTANALAEEKQRCLESGMDS-CLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp HHH-CCSCEEEEESSTTSHHHHHHHHCCCEE-EEESSCCHHHHHHHHHHHHHHH
T ss_pred hcC-CCCcEEEEECCCCHHHHHHHHHcCCce-EEECCCCHHHHHHHHHHHHHHh
Confidence 221 2456766643 3455666789875 5678789999999998887643
No 494
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=26.90 E-value=1.4e+02 Score=26.23 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCCeEEEeCCCCChHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEEeChH
Q 022128 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPE 112 (302)
Q Consensus 49 ~g~~IlitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l~--~~d~IifTS~~ 112 (302)
.|..|++..|.- ..+...++..|++++.+|. .|.+.+++.+.... +...|++++++
T Consensus 126 ~gd~V~~~~p~~--~~~~~~~~~~g~~~~~v~~------~d~~~l~~~l~~~~~~~~~~v~~~~~~ 183 (398)
T 3a2b_A 126 RNDYILLDERDH--ASIIDGSRLSFSKVIKYGH------NNMEDLRAKLSRLPEDSAKLICTDGIF 183 (398)
T ss_dssp TTCEEEEETTCC--HHHHHHHHHSSSEEEEECT------TCHHHHHHHHHTSCSSSCEEEEEESBC
T ss_pred CCCEEEECCccC--HHHHHHHHHcCCceEEeCC------CCHHHHHHHHHhhccCCceEEEEeCCC
No 495
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=26.84 E-value=1.7e+02 Score=26.22 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=35.8
Q ss_pred CCEEEEeCCCcc------hhhHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHc--CCCCEEE-EECcHHHH
Q 022128 178 KCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAVR 241 (302)
Q Consensus 178 ~~~vL~~rg~~~------~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~iv-ftS~s~v~ 241 (302)
++|++++.++.. .+.+.+.|++.|+++..+.-++..+......+..+.+ .+.|+|+ +-..+..+
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D 112 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGSPMD 112 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHHH
Confidence 478888887632 2567788888898764433332222111112223222 4678776 66666655
No 496
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=26.82 E-value=83 Score=25.58 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=26.8
Q ss_pred ccEEEEeChHHHHHHHHHHHHcCCCCceEEEEChhh---HHHHHHHhhccCCCCceeccC
Q 022128 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFSP 159 (302)
Q Consensus 103 ~d~IifTS~~av~~f~~~l~~~~~~~~~i~aVG~~T---a~~l~~~~~~~~~G~~~~~~p 159 (302)
+|.++..+....+.|...+...+.+.-.+++||... ...++.. |+.+..++
T Consensus 154 f~~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~a------G~~~~~v~ 207 (251)
T 2pke_A 154 FPRIEVVSEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAI------GGWGIYTP 207 (251)
T ss_dssp CCCEEEESCCSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHT------TCEEEECC
T ss_pred CceeeeeCCCCHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHC------CCEEEEEC
Confidence 455555443344444444455555545566666665 3455555 66655543
No 497
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.56 E-value=72 Score=25.22 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=33.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-C--CccEEEEeChHHH
Q 022128 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-T--IFDWIIITSPEAG 114 (302)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~l-~--~~d~IifTS~~av 114 (302)
..-+.+.|++.|+++... .+++ .|.+.+.+.+... . ++|.||.|-..++
T Consensus 33 ~~~l~~~L~~~G~~v~~~---~iv~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 33 GQLLHELLKEAGHKVTSY---EIVK-DDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHHTCEEEEE---EEEC-SSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred HHHHHHHHHHCCCeEeEE---EEeC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 356888999999988754 3333 3456666666543 4 7899998876664
No 498
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=26.54 E-value=1.3e+02 Score=24.01 Aligned_cols=51 Identities=8% Similarity=0.100 Sum_probs=34.0
Q ss_pred hHHHHHHhCCCeeEEEeeeeeecCCCCcHHHHHHcCCCCEEEEECc-------HHHHHHHHHhh
Q 022128 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSSWVNLI 248 (302)
Q Consensus 192 ~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~ivftS~-------s~v~~~~~~~l 248 (302)
.+.+.++ ...+|+...+|+ +.+..+..+.+...|.|+|.+| ..++ .|++.+
T Consensus 20 ~l~~~~~-~~~~v~v~dL~~----~~D~~~~~~~l~~aD~iV~~~P~y~~~~pa~lK-~~iDrv 77 (177)
T 3ha2_A 20 FFKAAIE-NFSNVTWHPLVA----DFNVEQEQSLLLQNDRIILEFPLYWYSAPALLK-QWMDTV 77 (177)
T ss_dssp HHHHHHT-TCTTEEEEECCT----TCCHHHHHHHHHTCSEEEEEEECBTTBCCHHHH-HHHHHH
T ss_pred HHHHHHh-cCCCEEEEECCC----cccHHHHHHHHHhCCEEEEECChhhccCCHHHH-HHHHHH
Confidence 3344443 346788888888 3334444555678899999875 6788 888775
No 499
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.53 E-value=1.6e+02 Score=25.87 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=17.0
Q ss_pred CCCEEEEeCCCcchhhHHHHHHhCCCeeEEEee
Q 022128 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (302)
Q Consensus 177 ~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~v 209 (302)
+|.+|+++........+.+.++..|+++..+++
T Consensus 85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 85 PEDDVLIPIYGRFGYLLTEIAERYGANVHMLEC 117 (416)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEecCCcccHHHHHHHHhcCCeeEEEec
Confidence 345666665443332344555556666555543
No 500
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=26.49 E-value=63 Score=26.31 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=24.3
Q ss_pred CCCCCCeEEEeCCCC-ChHHHHHHHHhCCCcEEEe
Q 022128 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (302)
Q Consensus 46 ~~l~g~~IlitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (302)
..+.||+||||-..+ -...+++.|.+.|++|..+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 678899999998755 3567888898999987754
Done!