BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022129
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD33|U183_ARATH UPF0183 protein At3g51130 OS=Arabidopsis thaliana GN=At3g51130 PE=2
SV=2
Length = 410
Score = 429 bits (1104), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 217/242 (89%)
Query: 5 QKPRRRCEGTAMGAIVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEP 64
Q+PRRR EGTAMGA V DLRPGVGIGPFS+GMPICEAFA IEQQPNIYDVVHVKY+DE+P
Sbjct: 14 QRPRRRLEGTAMGATVFDLRPGVGIGPFSIGMPICEAFAQIEQQPNIYDVVHVKYYDEDP 73
Query: 65 LKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYAL 124
LKLD++ISFPDHGFHLRFDPWSQRLRL+EIFD+KRLQMRYATS+IGG STLATFVAVYAL
Sbjct: 74 LKLDVVISFPDHGFHLRFDPWSQRLRLVEIFDVKRLQMRYATSMIGGPSTLATFVAVYAL 133
Query: 125 FGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVS 184
FGPTFPG+YDKER +Y LFYPGLSF FPIP QY DCC D EA LPLEFPDGTTPVTCRVS
Sbjct: 134 FGPTFPGIYDKERGIYSLFYPGLSFEFPIPNQYTDCCHDGEAALPLEFPDGTTPVTCRVS 193
Query: 185 IYDGSADKKVGVGSLFDKAIAPSLPVGSLYIEEVHAKLGEELHFTVGSQHIPFGASPQVT 244
IYD S+DKKVGVG L D+A P LP GSLY+EEVH K G+EL+FTVG QH+PFGASPQ
Sbjct: 194 IYDNSSDKKVGVGKLMDRASVPPLPPGSLYMEEVHVKPGKELYFTVGGQHMPFGASPQDV 253
Query: 245 FT 246
+T
Sbjct: 254 WT 255
>sp|Q9VSH9|U183_DROME UPF0183 protein CG7083 OS=Drosophila melanogaster GN=CG7083 PE=2
SV=1
Length = 438
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 10/175 (5%)
Query: 19 IVLDLRPGVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGF 78
IV ++ G F LGM +A A I+ Q I V V Y D PL +DIII+ P G
Sbjct: 6 IVPEISLGCDAWEFVLGMHFSQAIAIIQSQVGIIKGVQVLYSDTTPLGVDIIINLPQDGV 65
Query: 79 HLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERS 138
L FDP SQRL+ IE+F++K +++RY L + + FG T PGVYD +
Sbjct: 66 RLIFDPVSQRLKTIEVFNMKLVKLRYFGVYFNSPEVLPSIEQIEHSFGATHPGVYDAAKQ 125
Query: 139 VYMLFYPGLSFAFPIPAQ----YADCCQDREAELPLEFPDGTTPVTCRVSIYDGS 189
++ L + GLSF FP+ ++ YA L F +G +PV ++S+Y GS
Sbjct: 126 LFALHFRGLSFYFPVDSKLHSGYAHGLSS------LVFLNGASPVVSKMSLYAGS 174
>sp|P34692|U183_CAEEL UPF0183 protein T01G9.2 OS=Caenorhabditis elegans GN=T01G9.2 PE=1
SV=3
Length = 422
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 25 PGVGIGP----FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHL 80
P VG+ F LGMPI + A I+Q P + V +KY ++P DIII G L
Sbjct: 26 PDVGLKSSQFEFVLGMPINQCIAMIQQHPRMLTKVELKYSKKDPFYQDIIIYIGSTGIRL 85
Query: 81 RFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVY 140
FD SQ ++LIE+ ++ + + Y ++ + +AT V FG T PG YD + ++Y
Sbjct: 86 YFDGLSQLIKLIEVDNLSMITLTYNDTIFSDPNNMATLDRVNEFFGSTHPGSYDDKHNIY 145
Query: 141 MLFYPGLSFAFPIPAQYADCCQDREAE-------LPLEFPDGTTPVTCRVSIYDG 188
+ +PGLSF FP Y + E L++ + P ++SIY G
Sbjct: 146 VQSWPGLSFCFP----YGGENSNLEVRPGFGGNLRSLKYDANSQPKLTKMSIYRG 196
>sp|O08654|CP070_RAT UPF0183 protein C16orf70 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 422
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 36/203 (17%)
Query: 32 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRL 91
F+LGMP+ +A A +++ I V V Y ++ PL D+I++ G L FD ++QRL++
Sbjct: 19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLLFDAFNQRLKV 78
Query: 92 IEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAF 151
IE++D+ +++++Y + T + FG T PGVY+ ++ L + GLSF+F
Sbjct: 79 IEVYDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSF 138
Query: 152 PIPAQYADCCQDREAELP------------LEFPDGTTPVTCRVSIYDGSADKKVGVGSL 199
+ D E P L+ P G T R+ IY G+ SL
Sbjct: 139 QL---------DSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SL 179
Query: 200 FDKAIAPSLP----VGSLYIEEV 218
D AP +P +G++Y E V
Sbjct: 180 QDTK-APMMPLSCFLGNVYAESV 201
>sp|Q9BSU1|CP070_HUMAN UPF0183 protein C16orf70 OS=Homo sapiens GN=C16orf70 PE=1 SV=1
Length = 422
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 32 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRL 91
F+LGMP+ +A A +++ I V V Y ++ PL D+I++ G L FD ++QRL++
Sbjct: 19 FTLGMPLAQAVAILQKHCRIIKNVQVLYSEQSPLSHDLILNLTQDGIKLMFDAFNQRLKV 78
Query: 92 IEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAF 151
IE+ D+ +++++Y + T + FG T PGVY+ ++ L + GLSF+F
Sbjct: 79 IEVCDLTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSAEQLFHLNFRGLSFSF 138
Query: 152 PIPAQYADCCQDREAELP------------LEFPDGTTPVTCRVSIYDGSADKKVGVGSL 199
+ D E P L+ P G T R+ IY G+ SL
Sbjct: 139 QL---------DSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SL 179
Query: 200 FDKAIAPSLP----VGSLYIEEV 218
D AP +P +G++Y E V
Sbjct: 180 QDTK-APMMPLSCFLGNVYAESV 201
>sp|Q922R1|CP070_MOUSE UPF0183 protein C16orf70 homolog OS=Mus musculus PE=2 SV=2
Length = 422
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 32 FSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRL 91
F+LGMP+ +A A +++ I V V Y ++ PL D+I++ G L FD ++QRL++
Sbjct: 19 FTLGMPLAQAVAILQKHCRIIRNVQVLYSEQSPLSHDLILNLTQDGITLLFDAFNQRLKV 78
Query: 92 IEIFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAF 151
IE+ ++ +++++Y + T + FG T PGVY+ ++ L + GLSF+F
Sbjct: 79 IEVCELTKVKLKYCGVHFNSQAIAPTIEQIDQSFGATHPGVYNSTEQLFHLNFRGLSFSF 138
Query: 152 PIPAQYADCCQDREAELP------------LEFPDGTTPVTCRVSIYDGSADKKVGVGSL 199
+ D E P L+ P G T R+ IY G+ SL
Sbjct: 139 QL---------DSWTEAPKYEPNFAHGLASLQIPHGAT--VKRMYIYSGN--------SL 179
Query: 200 FDKAIAPSLP----VGSLYIEEV 218
D AP +P +G++Y E V
Sbjct: 180 QDTK-APVMPLSCFLGNVYAESV 201
>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a
PE=2 SV=1
Length = 2437
Score = 32.3 bits (72), Expect = 4.2, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 154 PAQYADCCQDREAELPLEFPDGTTPVTCRVSIYDGSADKKVGVGSLFDK 202
P + CQDRE P GTT V C ++I D K G DK
Sbjct: 609 PCRNGGTCQDRENAYICTCPKGTTGVNCEINI-DDCKRKPCDYGKCIDK 656
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,808,293
Number of Sequences: 539616
Number of extensions: 5162110
Number of successful extensions: 11003
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10992
Number of HSP's gapped (non-prelim): 11
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (28.1 bits)