Query 022129
Match_columns 302
No_of_seqs 118 out of 137
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 08:15:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03676 UPF0183: Uncharacteri 100.0 1E-70 2.2E-75 535.8 23.8 220 26-256 1-244 (394)
2 KOG2819 Uncharacterized conser 100.0 4.4E-69 9.5E-74 511.8 16.9 229 18-255 1-258 (413)
3 PF04355 SmpA_OmlA: SmpA / Oml 49.0 10 0.00023 28.2 1.4 21 234-254 11-31 (71)
4 PF05610 DUF779: Protein of un 34.1 28 0.00061 28.9 1.9 20 17-37 65-84 (95)
5 PRK10718 RpoE-regulated lipopr 31.1 1.1E+02 0.0024 28.3 5.4 56 73-135 88-144 (191)
6 PF14105 DUF4278: Domain of un 29.6 70 0.0015 23.3 3.2 10 101-110 2-11 (57)
7 PF15530 Toxin_50: Putative to 29.3 59 0.0013 29.4 3.2 37 121-157 89-138 (168)
8 KOG2667 COPII vesicle protein 27.6 53 0.0012 33.3 2.9 21 115-135 235-257 (379)
9 PF03676 UPF0183: Uncharacteri 27.0 2.1E+02 0.0045 29.1 7.0 76 18-93 197-292 (394)
10 PF11006 DUF2845: Protein of u 25.6 45 0.00098 26.3 1.7 28 229-256 7-34 (87)
11 PRK10301 hypothetical protein; 24.6 2.6E+02 0.0056 23.6 6.2 39 61-100 32-71 (124)
12 COG2913 OlmA Outer membrane li 24.5 48 0.001 29.3 1.8 24 233-256 47-70 (147)
13 PF06572 DUF1131: Protein of u 23.7 45 0.00097 30.4 1.5 98 26-134 22-123 (171)
14 PF10974 DUF2804: Protein of u 23.4 1.7E+02 0.0037 28.4 5.5 67 26-94 220-292 (333)
15 KOG3384 Selenoprotein [General 23.0 1.1E+02 0.0024 27.4 3.6 36 39-77 91-127 (154)
16 smart00462 PTB Phosphotyrosine 22.0 1.3E+02 0.0027 24.3 3.7 35 38-82 25-59 (134)
17 PRK11548 outer membrane biogen 21.9 56 0.0012 27.0 1.6 24 233-256 44-67 (113)
18 PRK11251 DNA-binding transcrip 20.4 60 0.0013 27.3 1.5 35 232-266 33-70 (109)
19 KOG2819 Uncharacterized conser 20.0 1.6E+02 0.0034 30.0 4.5 76 17-92 210-306 (413)
No 1
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=100.00 E-value=1e-70 Score=535.84 Aligned_cols=220 Identities=40% Similarity=0.771 Sum_probs=209.9
Q ss_pred CCcccccccCCcHHHHHHHHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEecCCCceEEEEEEeeCCcceEEEc
Q 022129 26 GVGIGPFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYA 105 (302)
Q Consensus 26 G~gLG~F~LG~sL~~vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~FD~~sQRLrlIEV~D~skv~L~Y~ 105 (302)
|.++|+|+|||||||||++||+++++||+|||+||+++|+++||+|+||++||||+|||++||||+|||+|+++++|+|+
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~~QrL~lIEv~d~~~i~L~Y~ 80 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQTFPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGPSQRLRLIEVYDFSKIKLRYK 80 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhccccCCceEEEECCCCCCcCCEEEEcCCCCeEEEECCCCcEEEEEEEecCccceEEeC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceeeeeccccCCCCCCCccCCCcEEEEeeCceEEEeeCCccCccccccccCCccccCCCCCCceeeEEEE
Q 022129 106 TSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDREAELPLEFPDGTTPVTCRVSI 185 (302)
Q Consensus 106 g~~~ssp~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYPGvaF~Fpi~s~~~~~~~~g~~~lsl~fpdg~tPvvsri~I 185 (302)
++.|++|++.|||++||++|||||||+||+++++|+||||||||+||+++++++.+.++.+ |++|++|++|+|+||+|
T Consensus 81 ~~~~~~p~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYpGlaF~Fpi~~~~~~~~~~~~~--sl~~~~~ssp~~tsmaI 158 (394)
T PF03676_consen 81 GSVFSSPEIGPTFRHIYRLFGPTYPGEYDKSRGTYVLSYPGLAFSFPIPSKFQSSYSDGLD--SLEFPSGSSPVATSMAI 158 (394)
T ss_pred cccccCcccCcchheeheccCCCCCCccCCCCCEEEEEECCEEEEeeCchhhcccccCCcc--eeecCCCCCcceeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999988865 99999999999999999
Q ss_pred eeCCCCCccccCcccccCCCCCCC----CCCeeEEEEEEEe------CCeEEEEecc--------------EEEEcCCCH
Q 022129 186 YDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKL------GEELHFTVGS--------------QHIPFGASP 241 (302)
Q Consensus 186 y~gs~~~~~~~g~~~~~a~~P~LP----~g~~y~e~v~v~~------~~~l~f~~~~--------------~~I~FGdS~ 241 (302)
|+|+ +|++|++|++| +|++|+|+++|++ +.+++|..+. +.|+|||||
T Consensus 159 f~G~---------s~~ear~p~lp~~~~~~~~~~~~v~v~~~~~~~~~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~ 229 (394)
T PF03676_consen 159 FSGS---------SWAEARAPPLPLSCYCGNLYLESVEVLRDNKETVGLELSLVTEGGPGRIEEPRRSNFERWIRFGDTP 229 (394)
T ss_pred EcCC---------chhcccCCCccccccCCCcceeeEEeeccCCCCcCcEEEEEEcCCCcccccccccCceEEEEeCCCH
Confidence 9998 69999999888 4999999999954 4788887775 899999999
Q ss_pred HHHHhhcCCceeecc
Q 022129 242 QVTFTCIVVFFIVLQ 256 (302)
Q Consensus 242 QDVls~LG~p~~v~~ 256 (302)
|||+++||+|.+|..
T Consensus 230 qdv~~~lG~P~~~~~ 244 (394)
T PF03676_consen 230 QDVLSELGPPDRIFY 244 (394)
T ss_pred HHHHHhhCCccceee
Confidence 999999999999864
No 2
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-69 Score=511.77 Aligned_cols=229 Identities=40% Similarity=0.652 Sum_probs=207.3
Q ss_pred eeEEEEecCCccc----ccccCCcHHHHHHHHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEecCCCceEEEEE
Q 022129 18 AIVLDLRPGVGIG----PFSLGMPICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIE 93 (302)
Q Consensus 18 mL~l~l~PG~gLG----~F~LG~sL~~vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~FD~~sQRLrlIE 93 (302)
||+++++|.++|| +|+|||+|+||+++||+|++++++|+|+||+++|+..||||+||++||||+|||.+||||+||
T Consensus 1 ~Ld~tvVpd~~lg~~~~eF~lGMpi~qaiAiiqqh~riik~VqvlYsd~~Pl~~DiIinl~qdGirL~FD~~sQrLKlIE 80 (413)
T KOG2819|consen 1 MLDLTVVPDVSLGSSQWEFVLGMPIAQAIAIIQQHPRIIKNVQVLYSDQDPLSHDIIINLPQDGIRLMFDPFSQRLKLIE 80 (413)
T ss_pred CCceeEecccccCCccceeEecChHHHHHHHHHhCccceeeEEEEEecCCCcceeEEEecCCCceEEEechhhhceeEEE
Confidence 7899999999998 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCcceEEEccccccCCCCcceeeeeccccCCCCCCCccCCCcEEEEeeCceEEEeeCCccCccccccc--cCCcccc
Q 022129 94 IFDIKRLQMRYATSLIGGSSTLATFVAVYALFGPTFPGVYDKERSVYMLFYPGLSFAFPIPAQYADCCQDR--EAELPLE 171 (302)
Q Consensus 94 V~D~skv~L~Y~g~~~ssp~~~pTf~~Iy~~FGPTyPG~yd~~~~~YvLsYPGvaF~Fpi~s~~~~~~~~g--~~~lsl~ 171 (302)
|.|+++++|+|+|..||+|++.||+++|+++|||||||.||++++.|+|+|||+||+||.+....+.+..| .+.+||+
T Consensus 81 V~dl~~vklrY~gv~fnsp~~lpTieqi~~sFGaThPGvYd~~~~iy~l~~~GLSF~fp~~~~~~~~~~~g~~h~l~sL~ 160 (413)
T KOG2819|consen 81 VFDLKKVKLRYCGVHFNSPAILPTIEQIDQSFGATHPGVYDSAHQIYVLSWPGLSFCFPGGENSNPKVHPGFAHGLRSLV 160 (413)
T ss_pred EecceEEEEEEeeeEecCcccchhHHHHHHhhCCCCCCCcCChhhhceeecCceEEECCCCCCCCcccccCccccceeeE
Confidence 99999999999999999999999999999999999999999999999999999999999765444444433 2345999
Q ss_pred CCCCCCceeeEEEEeeCCCCCccccCcccccCCCCCCC----CCCeeEEEEEEEeC----CeE--E----------E---
Q 022129 172 FPDGTTPVTCRVSIYDGSADKKVGVGSLFDKAIAPSLP----VGSLYIEEVHAKLG----EEL--H----------F--- 228 (302)
Q Consensus 172 fpdg~tPvvsri~Iy~gs~~~~~~~g~~~~~a~~P~LP----~g~~y~e~v~v~~~----~~l--~----------f--- 228 (302)
||+|+||+++||+||.|+ +..+++.|.+| +|++|.|+|+++|. .++ . .
T Consensus 161 ~~~g~tPv~~kmsiY~g~---------n~~e~~~~~~plscy~gq~~~rsv~~lr~~~~~~gl~lkl~t~~Gr~l~~~~~ 231 (413)
T KOG2819|consen 161 FPAGATPVVTKMSIYRGS---------NPSEPESPDLPLSCYVGQLYTRSVEVLREGGNPVGLDLKLDTQCGRILLPERV 231 (413)
T ss_pred ecCCCCceeEEEEEecCC---------CccccccCCccchhhhhhhhhcccccccCCCCccceeEeecccCCcccccccc
Confidence 999999999999999998 56778888887 68889998888775 222 2 2
Q ss_pred EeccEEEEcCCCHHHHHhhcCCceeec
Q 022129 229 TVGSQHIPFGASPQVTFTCIVVFFIVL 255 (302)
Q Consensus 229 ~~~~~~I~FGdS~QDVls~LG~p~~v~ 255 (302)
++.+|+|.|||||||||++||.|.+|.
T Consensus 232 ~v~~r~~~FGdScqDV~t~LGaP~kvf 258 (413)
T KOG2819|consen 232 SVYTRQIYFGDSCQDVQTMLGAPTKVF 258 (413)
T ss_pred eEeeEeeecCCcHhHHHHHhCCCcccc
Confidence 345899999999999999999999985
No 3
>PF04355 SmpA_OmlA: SmpA / OmlA family; InterPro: IPR007450 This is a bacterial outer membrane lipoprotein, possibly involved in maintaining the structural integrity of the cell envelope []. The lipid attachment site is a conserved N-terminal cysteine residue sometimes found adjacent to the OmpA domain (IPR006665 from INTERPRO).; GO: 0019867 outer membrane; PDB: 4DM5_C 2PXG_A 2YH9_B 2KXX_A 2KM7_A.
Probab=48.95 E-value=10 Score=28.21 Aligned_cols=21 Identities=10% Similarity=-0.067 Sum_probs=17.2
Q ss_pred EEEcCCCHHHHHhhcCCceee
Q 022129 234 HIPFGASPQVTFTCIVVFFIV 254 (302)
Q Consensus 234 ~I~FGdS~QDVls~LG~p~~v 254 (302)
.|.=|+|-+||...||+|..+
T Consensus 11 ~i~~GmTk~qV~~lLG~P~~~ 31 (71)
T PF04355_consen 11 QIKPGMTKDQVRALLGSPSLR 31 (71)
T ss_dssp TT-TTSBHHHHHHHHTS-SEE
T ss_pred hhcCCCCHHHHHHhcCCCCcc
Confidence 466799999999999999987
No 4
>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function.
Probab=34.13 E-value=28 Score=28.94 Aligned_cols=20 Identities=45% Similarity=0.865 Sum_probs=15.9
Q ss_pred ceeEEEEecCCcccccccCCc
Q 022129 17 GAIVLDLRPGVGIGPFSLGMP 37 (302)
Q Consensus 17 ~mL~l~l~PG~gLG~F~LG~s 37 (302)
.-|.++|+||+| |.|.|..+
T Consensus 65 t~L~iDVv~GrG-~~FSLE~~ 84 (95)
T PF05610_consen 65 TQLTIDVVPGRG-GGFSLEAP 84 (95)
T ss_pred cEEEEEEEecCC-CeeeccCC
Confidence 358899999999 66877654
No 5
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=31.09 E-value=1.1e+02 Score=28.34 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=43.9
Q ss_pred cCCCceEEEecCCCceEEEEEEeeCCcceEEEccccccCCCCcceeeeec-cccCCCCCCCccC
Q 022129 73 FPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVY-ALFGPTFPGVYDK 135 (302)
Q Consensus 73 Lp~~GIrL~FD~~sQRLrlIEV~D~skv~L~Y~g~~~ssp~~~pTf~~Iy-~~FGPTyPG~yd~ 135 (302)
+.++.++|.+.+..=...-|+|.|-+- ..-.+..++..|..+| +.||-.++|+=+.
T Consensus 88 ~~~d~v~lvi~G~~G~V~rI~V~d~~i-------~t~~G~~IGtpFs~ly~kAfg~C~~g~~~~ 144 (191)
T PRK10718 88 MKGDQVAMVINGQQGTVSRIDVLDSDI-------PTAWGVKIGTPFSDLYSKAFGNCQKASGDD 144 (191)
T ss_pred ecCCceEEEEECCCCcEEEEEEeCCCC-------CCCCccccCccHHHHhhhhhhhcccCCCCC
Confidence 667889999999866888899987651 0124567888999999 6999999998543
No 6
>PF14105 DUF4278: Domain of unknown function (DUF4278)
Probab=29.56 E-value=70 Score=23.27 Aligned_cols=10 Identities=10% Similarity=0.218 Sum_probs=6.6
Q ss_pred eEEEcccccc
Q 022129 101 QMRYATSLIG 110 (302)
Q Consensus 101 ~L~Y~g~~~s 110 (302)
+|+|.|..-.
T Consensus 2 ~L~YRGv~Y~ 11 (57)
T PF14105_consen 2 KLTYRGVSYD 11 (57)
T ss_pred ceeECCCccC
Confidence 6777777543
No 7
>PF15530 Toxin_50: Putative toxin 50
Probab=29.34 E-value=59 Score=29.41 Aligned_cols=37 Identities=35% Similarity=0.799 Sum_probs=24.8
Q ss_pred eccccCCCCCCCc-cCCC----------cEEEEee--CceEEEeeCCccC
Q 022129 121 VYALFGPTFPGVY-DKER----------SVYMLFY--PGLSFAFPIPAQY 157 (302)
Q Consensus 121 Iy~~FGPTyPG~y-d~~~----------~~YvLsY--PGvaF~Fpi~s~~ 157 (302)
|-=.|||-+||.+ |+++ ...-+|| -|+.|+|-+-..|
T Consensus 89 iGi~FGPYfpg~~gd~~rdyS~~~g~Gv~Sv~~S~gkDG~gfSFgvGpsw 138 (168)
T PF15530_consen 89 IGISFGPYFPGVFGDPDRDYSINLGFGVGSVEISYGKDGFGFSFGVGPSW 138 (168)
T ss_pred EeeecCCcCccccCCCCccceecccccceEeeeeecccCceEEeecCCcc
Confidence 4457999999999 5433 2223444 4888999886555
No 8
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=53 Score=33.28 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=16.1
Q ss_pred cceeeeec--cccCCCCCCCccC
Q 022129 115 LATFVAVY--ALFGPTFPGVYDK 135 (302)
Q Consensus 115 ~pTf~~Iy--~~FGPTyPG~yd~ 135 (302)
...|.|+- =.||+.|||..+|
T Consensus 235 ~~n~SH~InhLSFG~~~p~~~nP 257 (379)
T KOG2667|consen 235 NLNFSHRINHLSFGEYIPGIVNP 257 (379)
T ss_pred cCCceEEEeeeccCCCCcccccC
Confidence 36677766 3899999998775
No 9
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=27.02 E-value=2.1e+02 Score=29.08 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=54.1
Q ss_pred eeEEEEecCCccc------------ccccCCcHHHHHHHHhcCCCccceEEE---Eec-----CCCCCccceEEEcCCCc
Q 022129 18 AIVLDLRPGVGIG------------PFSLGMPICEAFASIEQQPNIYDVVHV---KYF-----DEEPLKLDIIISFPDHG 77 (302)
Q Consensus 18 mL~l~l~PG~gLG------------~F~LG~sL~~vL~~Lk~~~~~f~~V~v---~Ys-----~~~Pl~~pIvI~Lp~~G 77 (302)
-+++.+.-+.|.| ...+|.|-.|+++.|=.-..+|.+-+= +.+ .......|..-|--..|
T Consensus 197 ~~~l~l~~~~g~~~~~~~~~~~~~~~I~fGdT~qdv~~~lG~P~~~~~k~~d~m~ih~~~~~~~~~~~~~~yf~nYf~~G 276 (394)
T PF03676_consen 197 GLELSLVTEGGPGRIEEPRRSNFERWIRFGDTPQDVLSELGPPDRIFYKSDDRMSIHSPSSHKQVPSKPSDYFYNYFTLG 276 (394)
T ss_pred CcEEEEEEcCCCcccccccccCceEEEEeCCCHHHHHHhhCCccceeecccccccccccccccCCccCCCCEEEeccccc
Confidence 3566666666555 467899999999999876666655321 122 22334677788999999
Q ss_pred eEEEecCCCceEEEEE
Q 022129 78 FHLRFDPWSQRLRLIE 93 (302)
Q Consensus 78 IrL~FD~~sQRLrlIE 93 (302)
|.+.||+.+.|++-|=
T Consensus 277 ~Dilfd~~~~~v~K~I 292 (394)
T PF03676_consen 277 LDILFDGNTHRVKKFI 292 (394)
T ss_pred eEEEEeCCCceEEEEE
Confidence 9999999988876554
No 10
>PF11006 DUF2845: Protein of unknown function (DUF2845); InterPro: IPR021268 This bacterial family of proteins has no known function.
Probab=25.61 E-value=45 Score=26.29 Aligned_cols=28 Identities=11% Similarity=-0.086 Sum_probs=23.5
Q ss_pred EeccEEEEcCCCHHHHHhhcCCceeecc
Q 022129 229 TVGSQHIPFGASPQVTFTCIVVFFIVLQ 256 (302)
Q Consensus 229 ~~~~~~I~FGdS~QDVls~LG~p~~v~~ 256 (302)
..++..|.-|||..||+..-|.|.-.-+
T Consensus 7 rCg~~lVs~Gds~~eVl~kCGeP~~~~~ 34 (87)
T PF11006_consen 7 RCGGSLVSEGDSKAEVLAKCGEPASKSS 34 (87)
T ss_pred ecCCCCccCCCCHHHHHHhCCCCCccee
Confidence 3457889999999999999999986544
No 11
>PRK10301 hypothetical protein; Provisional
Probab=24.57 E-value=2.6e+02 Score=23.61 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=28.2
Q ss_pred CCCCCccceEEEcCCCceEEEecCCCc-eEEEEEEeeCCcc
Q 022129 61 DEEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIKRL 100 (302)
Q Consensus 61 ~~~Pl~~pIvI~Lp~~GIrL~FD~~sQ-RLrlIEV~D~skv 100 (302)
..+|-....+=.-|+. |.|.|+.+=+ ++.-|+|.|.+.-
T Consensus 32 ~s~Pa~ga~v~~~P~~-V~L~F~e~v~~~~s~i~v~~~~g~ 71 (124)
T PRK10301 32 HQYPAANAQVTAAPQA-LTLNFSEGIEPGFSGATITGPKQE 71 (124)
T ss_pred ccCCCCCCccccCCCE-EEEEcCCCccccccEEEEEcCCCC
Confidence 5677777766666766 9999998544 5667888877643
No 12
>COG2913 OlmA Outer membrane lipoprotein OmlA (small protein A) [Cell envelope biogenesis, outer membrane]
Probab=24.53 E-value=48 Score=29.29 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.4
Q ss_pred EEEEcCCCHHHHHhhcCCceeecc
Q 022129 233 QHIPFGASPQVTFTCIVVFFIVLQ 256 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~p~~v~~ 256 (302)
..++.|.|-|+|+-.||.|+.|--
T Consensus 47 ~ql~~Gmtk~QV~~lLGtP~~~d~ 70 (147)
T COG2913 47 DQLKVGMTKDQVLYLLGTPSLVDT 70 (147)
T ss_pred HHhcCCCCHHHHHHHhCCCeeecC
Confidence 578899999999999999999854
No 13
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=23.70 E-value=45 Score=30.38 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=47.1
Q ss_pred CCcccccccCCcHHH-HHH-HHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEecCC-CceEEEEEEeeCCcceE
Q 022129 26 GVGIGPFSLGMPICE-AFA-SIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPW-SQRLRLIEIFDIKRLQM 102 (302)
Q Consensus 26 G~gLG~F~LG~sL~~-vL~-~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~FD~~-sQRLrlIEV~D~skv~L 102 (302)
..|+|.+.-..++.+ ||+ .|.... +.+.- +.-.+.+ ...+.=-+.++-+.|.+++. ..+.+-|||.|-.-
T Consensus 22 ~~GVG~Ita~Tp~~~~aI~~aL~g~y-~lrsG-m~t~nG~--~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i--- 94 (171)
T PF06572_consen 22 EQGVGGITASTPMDEDAIKDALDGDY-RLRSG-MQTANGN--IVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDI--- 94 (171)
T ss_dssp TTEETTEETTSBSSHHHHHHH--SS--EEEEE-EEEETTE--EEEEEEEEETTEEEEEEEE----BEEEEEE--TTS---
T ss_pred cCcccccccCCcCCHHHHHHhcCCCc-EEecc-eecCCCC--eEEeeeeecCCeEEEEEecCCCCcEEEEEEecccc---
Confidence 578887765555432 333 333322 11111 1111212 22333345667799999986 78899999987651
Q ss_pred EEccccccCCCCcceeeeec-cccCCCCCCCcc
Q 022129 103 RYATSLIGGSSTLATFVAVY-ALFGPTFPGVYD 134 (302)
Q Consensus 103 ~Y~g~~~ssp~~~pTf~~Iy-~~FGPTyPG~yd 134 (302)
..-.+..++..|..+| +.||-+.+|+=+
T Consensus 95 ----~t~~G~kIGt~Fs~ly~kAfg~C~~g~~~ 123 (171)
T PF06572_consen 95 ----KTPWGVKIGTPFSDLYSKAFGNCRPGEGD 123 (171)
T ss_dssp -----BTTS--TT-BHHHH-S--TTTEEE----
T ss_pred ----CCccccccCccHHHHHhhhhhhccccCCC
Confidence 0124567888999999 889999999843
No 14
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=23.37 E-value=1.7e+02 Score=28.36 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=48.7
Q ss_pred CCcccccccCCcHHH------HHHHHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEecCCCceEEEEEE
Q 022129 26 GVGIGPFSLGMPICE------AFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRFDPWSQRLRLIEI 94 (302)
Q Consensus 26 G~gLG~F~LG~sL~~------vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~FD~~sQRLrlIEV 94 (302)
|+.+| |-||....+ -.=.+.-+.+..+.|.+.|+.++|. .|=.|.-.+..+.|+|-|..+|-.-+-+
T Consensus 220 G~~iG-~NL~~g~~d~t~~tEN~l~~dG~~~kL~~V~f~~~~~~~~-~pW~i~s~dg~vdL~FtP~~~r~~~~nl 292 (333)
T PF10974_consen 220 GRRIG-FNLGAGFNDGTGATENALWVDGKLHKLPPVRFEYDREDPM-KPWRITSDDGRVDLTFTPIFDRKEKTNL 292 (333)
T ss_pred CCEEE-EEeecccccCCCCcceEEEECCEEEECCcEEEEecCcCCC-CCeEEEcCCCeEEEEEEEeeeeecccce
Confidence 77777 666766655 1112444556678999999999986 5777777799999999998888765543
No 15
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=23.04 E-value=1.1e+02 Score=27.39 Aligned_cols=36 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHhc-CCCccceEEEEecCCCCCccceEEEcCCCc
Q 022129 39 CEAFASIEQ-QPNIYDVVHVKYFDEEPLKLDIIISFPDHG 77 (302)
Q Consensus 39 ~~vL~~Lk~-~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~G 77 (302)
-|+-+.+++ ++..||+|+|+|=-.. .|++.-+.++|
T Consensus 91 PqiqaFi~sd~~~kFp~vkvkyVrg~---~P~l~llDadg 127 (154)
T KOG3384|consen 91 PQIQAFIESDEPEKFPGVKVKYVRGS---DPVLKLLDADG 127 (154)
T ss_pred HHHHHHHhcCchhhCCCceEEEecCC---CCeeEeecCCC
Confidence 588899999 8899999999998765 57777777764
No 16
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=22.04 E-value=1.3e+02 Score=24.32 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCccceEEEEecCCCCCccceEEEcCCCceEEEe
Q 022129 38 ICEAFASIEQQPNIYDVVHVKYFDEEPLKLDIIISFPDHGFHLRF 82 (302)
Q Consensus 38 L~~vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~pIvI~Lp~~GIrL~F 82 (302)
+.++++.|++. +....+-..++.|.+...||++.=
T Consensus 25 ~~~ai~~l~~~----------~~~~~~~~~~v~l~vs~~gv~v~~ 59 (134)
T smart00462 25 VQEAIRKLRAA----------QGSEKKEPQKVILSISSRGVKLID 59 (134)
T ss_pred HHHHHHHHHHh----------hhhccCCCCEEEEEEECCcEEEEE
Confidence 78889999875 123345568999999999999853
No 17
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=21.85 E-value=56 Score=27.02 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=20.9
Q ss_pred EEEEcCCCHHHHHhhcCCceeecc
Q 022129 233 QHIPFGASPQVTFTCIVVFFIVLQ 256 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~p~~v~~ 256 (302)
..|.-|.|-++|...||.|...-.
T Consensus 44 ~~l~~GmTk~qV~~lLGtP~~~~~ 67 (113)
T PRK11548 44 AKIHVGMTQQQVAYTLGTPMMQDP 67 (113)
T ss_pred HHhcCCCCHHHHHHHcCCCccccC
Confidence 578899999999999999987743
No 18
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=20.44 E-value=60 Score=27.34 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=27.0
Q ss_pred cEEEEcCCCHHHHHhhcCCceee---ccccchhhhHHH
Q 022129 232 SQHIPFGASPQVTFTCIVVFFIV---LQSDFCCFELIL 266 (302)
Q Consensus 232 ~~~I~FGdS~QDVls~LG~p~~v---~~~~~~~~~~~~ 266 (302)
-..|.-|+|-|+|...||.|..+ ...+.-|++.++
T Consensus 33 v~qv~~GmTr~qV~~~lGtP~~~~~~~~~~~t~w~Yv~ 70 (109)
T PRK11251 33 VKDVKKGMTRQQVAQIAGKPSSEVSMIHARGTCQTYIL 70 (109)
T ss_pred HHHcCCCCCHHHHHHHcCCCCccceeecCCCcceeEEE
Confidence 35778999999999999999864 445566776544
No 19
>KOG2819 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.02 E-value=1.6e+02 Score=30.01 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=50.6
Q ss_pred ceeEEEEe----cCCcccc---------cccCCcHHHHHHHHhcCCCccceEE---EEecCCCCC-----ccceEEEcCC
Q 022129 17 GAIVLDLR----PGVGIGP---------FSLGMPICEAFASIEQQPNIYDVVH---VKYFDEEPL-----KLDIIISFPD 75 (302)
Q Consensus 17 ~mL~l~l~----PG~gLG~---------F~LG~sL~~vL~~Lk~~~~~f~~V~---v~Ys~~~Pl-----~~pIvI~Lp~ 75 (302)
.|-.+.|+ +|++|=+ .-.|+|-.+|.++|-+-..+|.+-+ .+.|...+- ..|+.-|-=-
T Consensus 210 ~~~gl~lkl~t~~Gr~l~~~~~~v~~r~~~FGdScqDV~t~LGaP~kvf~Ks~DkMkIHs~s~~r~~~t~~ndyFfNYFt 289 (413)
T KOG2819|consen 210 NPVGLDLKLDTQCGRILLPERVSVYTRQIYFGDSCQDVQTMLGAPTKVFYKSEDKMKIHSPSPKRQLPTKCNDYFFNYFT 289 (413)
T ss_pred CccceeEeecccCCcccccccceEeeEeeecCCcHhHHHHHhCCCcccccccccceeecCCCCcccCCCcCcchhhhhhh
Confidence 34445555 8888763 3459999999999999777766532 234444322 2334444444
Q ss_pred CceEEEecCCCceEEEE
Q 022129 76 HGFHLRFDPWSQRLRLI 92 (302)
Q Consensus 76 ~GIrL~FD~~sQRLrlI 92 (302)
.|+...||+.+||-|--
T Consensus 290 lGlDiLFD~~t~kvkKF 306 (413)
T KOG2819|consen 290 LGLDILFDAVTHKVKKF 306 (413)
T ss_pred cchhheeecccceeeEE
Confidence 59999999999998743
Done!