Query 022129
Match_columns 302
No_of_seqs 118 out of 137
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 14:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zl8_A LIN-7; heterodimer, alp 65.5 1.1 3.6E-05 32.4 -0.4 11 252-262 34-44 (53)
2 2yh9_A Small protein A, BAME p 36.1 12 0.0004 28.3 1.1 23 233-255 11-33 (88)
3 2km7_A Small protein A; BAME, 30.0 15 0.00053 28.6 0.9 23 233-255 25-47 (102)
4 2qzb_A Uncharacterized protein 26.8 25 0.00086 30.6 1.7 60 68-134 58-118 (166)
5 2c9r_A COPC, copper resistance 21.9 68 0.0023 24.9 3.2 35 62-98 7-42 (102)
6 1lyq_A PCOC copper resistance 18.6 82 0.0028 24.6 3.0 35 62-98 8-43 (104)
7 2pxg_A Outer membrane protein; 16.6 39 0.0013 27.2 0.7 23 233-255 24-46 (118)
8 3h4x_A Phosphatidylinositol-sp 13.5 1.3E+02 0.0045 28.8 3.6 51 15-76 55-131 (339)
9 3gmx_B BLP; 2-layer alpha/beta 13.2 52 0.0018 28.3 0.6 18 233-250 10-27 (154)
10 1f46_A Cell division protein Z 12.9 64 0.0022 26.6 1.1 26 128-155 61-86 (140)
No 1
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=65.52 E-value=1.1 Score=32.45 Aligned_cols=11 Identities=45% Similarity=0.377 Sum_probs=8.9
Q ss_pred eeeccccchhh
Q 022129 252 FIVLQSDFCCF 262 (302)
Q Consensus 252 ~~v~~~~~~~~ 262 (302)
-+|||||||--
T Consensus 34 q~VLqSdF~~a 44 (53)
T 1zl8_A 34 QQVLQSEFFGA 44 (53)
T ss_dssp HHHHSCSHHHH
T ss_pred HHHHHHHHHHH
Confidence 47999999953
No 2
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=36.10 E-value=12 Score=28.32 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEEcCCCHHHHHhhcCCceeec
Q 022129 233 QHIPFGASPQVTFTCIVVFFIVL 255 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~p~~v~ 255 (302)
..|.-|.|-++|...||.|..+-
T Consensus 11 ~~i~~GmTk~qV~~lLG~P~~~~ 33 (88)
T 2yh9_A 11 SKIRVGMTQQQVAYALGTPLMSD 33 (88)
T ss_dssp TTCCTTCBHHHHHHHHCSCSEEC
T ss_pred HhccCCCCHHHHHHHcCCCcccc
Confidence 45788999999999999999874
No 3
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=30.00 E-value=15 Score=28.63 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEEcCCCHHHHHhhcCCceeec
Q 022129 233 QHIPFGASPQVTFTCIVVFFIVL 255 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~p~~v~ 255 (302)
..|.-|.|-+||...||.|..+-
T Consensus 25 ~~i~~GmTk~qV~~lLG~P~~~~ 47 (102)
T 2km7_A 25 SKIRVGMTQQQVAYALGTPLMSD 47 (102)
T ss_dssp TTCCTTCBHHHHHHHHCCCCCCC
T ss_pred HhccCCCCHHHHHHhcCCCcccc
Confidence 46788999999999999999863
No 4
>2qzb_A Uncharacterized protein YFEY; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Escherichia coli}
Probab=26.81 E-value=25 Score=30.60 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=43.0
Q ss_pred ceEEEcCCCceEEEecCCCceEEEEEEeeCCcceEEEccccccCCCCcceeeeec-cccCCCCCCCcc
Q 022129 68 DIIISFPDHGFHLRFDPWSQRLRLIEIFDIKRLQMRYATSLIGGSSTLATFVAVY-ALFGPTFPGVYD 134 (302)
Q Consensus 68 pIvI~Lp~~GIrL~FD~~sQRLrlIEV~D~skv~L~Y~g~~~ssp~~~pTf~~Iy-~~FGPTyPG~yd 134 (302)
++.=-+.++.+.|.|++...+.+-|||.|-.- ..-.+..++..|..+| +.||-+++|+=+
T Consensus 58 ~~~qA~~~d~v~lvi~G~~g~V~rI~V~d~~i-------~t~~G~kIGtpFs~ly~ka~g~C~~g~~~ 118 (166)
T 2qzb_A 58 RFFEVMKGDNVAMVINGDQGTISRIDVLDSDI-------PADTGVKIGTPFSDLYSKAFGNCQKADGD 118 (166)
T ss_dssp EEEEEEETTEEEEEEEC--CBCCEEEECCTTC-------CBTTSCCTTCBHHHHCSCCTTTEEEC---
T ss_pred EeeeeecCCcEEEEEECCCCcEEEEEEeCCCC-------CCCCccccCcchHHhhhhhcccceecCCC
Confidence 33335668889999999777999999987651 0124557899999999 799999999843
No 5
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=21.87 E-value=68 Score=24.93 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=25.2
Q ss_pred CCCCccceEEEcCCCceEEEecCCC-ceEEEEEEeeCC
Q 022129 62 EEPLKLDIIISFPDHGFHLRFDPWS-QRLRLIEIFDIK 98 (302)
Q Consensus 62 ~~Pl~~pIvI~Lp~~GIrL~FD~~s-QRLrlIEV~D~s 98 (302)
++|.+...+ .-|+. |+|.|+..= -++.-|+|.|.+
T Consensus 7 s~Pa~ga~v-~aP~~-v~L~Fse~v~~~~s~v~v~~~~ 42 (102)
T 2c9r_A 7 STPAEGSEG-AAPAK-IELHFSENLVTQFSGAKLVMTA 42 (102)
T ss_dssp EESCTTCEE-SCCSC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCccCccEEEEECCC
Confidence 457677777 66766 999999844 366777777664
No 6
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=18.60 E-value=82 Score=24.58 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=24.5
Q ss_pred CCCCccceEEEcCCCceEEEecCCCc-eEEEEEEeeCC
Q 022129 62 EEPLKLDIIISFPDHGFHLRFDPWSQ-RLRLIEIFDIK 98 (302)
Q Consensus 62 ~~Pl~~pIvI~Lp~~GIrL~FD~~sQ-RLrlIEV~D~s 98 (302)
++|.+.-.+ .-|+. |.|.|+..=+ ++.-|+|.|.+
T Consensus 8 s~Pa~ga~v-~aP~~-V~L~Fse~v~~~~s~v~v~~~~ 43 (104)
T 1lyq_A 8 SVPQADSAV-AAPEK-IQLNFSENLTVKFSGAKLTMTG 43 (104)
T ss_dssp EESCTTCEE-SCCCC-EEEEESSCCCGGGCEEEEEEEE
T ss_pred cCCCCcCEE-CCCCE-EEEEeCCCCcccccEEEEECCC
Confidence 457677777 66766 9999998543 56667777654
No 7
>2pxg_A Outer membrane protein; two layer alpha/beta plait, two layer sandwich architecture; NMR {Xanthomonas axonopodis PV}
Probab=16.56 E-value=39 Score=27.17 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=19.7
Q ss_pred EEEEcCCCHHHHHhhcCCceeec
Q 022129 233 QHIPFGASPQVTFTCIVVFFIVL 255 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~p~~v~ 255 (302)
..|.-|.|-++|...||.|..+-
T Consensus 24 ~ql~~GMTk~QV~~lLGtP~~~~ 46 (118)
T 2pxg_A 24 EQLQVGQSKQQVSALLGTPSIPD 46 (118)
T ss_dssp TTTCCCSCHHHHHHHHTSCCCCC
T ss_pred HHccCCCCHHHHHHHcCCCcccc
Confidence 34677999999999999999874
No 8
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A
Probab=13.49 E-value=1.3e+02 Score=28.80 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=37.9
Q ss_pred ccceeEEEEecCCccccccc------C--------------------CcHHHHHHHHhcCCCccceEEEEecCCCCCccc
Q 022129 15 AMGAIVLDLRPGVGIGPFSL------G--------------------MPICEAFASIEQQPNIYDVVHVKYFDEEPLKLD 68 (302)
Q Consensus 15 ~~~mL~l~l~PG~gLG~F~L------G--------------------~sL~~vL~~Lk~~~~~f~~V~v~Ys~~~Pl~~p 68 (302)
+..+|+|+|.|.-.=|.+.+ | .+|.++|..||. |++.+|-.-|
T Consensus 55 GVR~LELDIw~n~~~g~~~V~Hg~~l~~~nnC~~as~~~dL~t~Tt~~tL~~CL~~IK~-----------WsdahPsh~P 123 (339)
T 3h4x_A 55 GAALLELDLWSNALGRSWRVSHSNPLGNNSNCEGAANASELRTKSRDQDFAGCLSDMRA-----------WHDAHPGHRP 123 (339)
T ss_dssp CCSEEEEEEESSSSSSSCEECSSSCSSCCSSCCCCSSGGGTTCSCCCCCHHHHHHHHHH-----------HHHHSTTCCC
T ss_pred CCCEEEEEeecCCCCCCeEEeCCCcccccccccccccccccccCCCCcCHHHHHHHHHH-----------HHHhCCCCCc
Confidence 35689999999843332221 1 579999999998 8888888899
Q ss_pred eEEEcCCC
Q 022129 69 IIISFPDH 76 (302)
Q Consensus 69 IvI~Lp~~ 76 (302)
|+|.|...
T Consensus 124 ViI~LE~K 131 (339)
T 3h4x_A 124 ILLKIEMK 131 (339)
T ss_dssp EEEEEEET
T ss_pred eEEEEecc
Confidence 99887754
No 9
>3gmx_B BLP; 2-layer alpha/beta sandwich, protein binding; 1.05A {Streptomyces clavuligerus} SCOP: d.98.1.0 PDB: 3gmy_A
Probab=13.23 E-value=52 Score=28.32 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=16.3
Q ss_pred EEEEcCCCHHHHHhhcCC
Q 022129 233 QHIPFGASPQVTFTCIVV 250 (302)
Q Consensus 233 ~~I~FGdS~QDVls~LG~ 250 (302)
..|.||+|-|+|+..+|.
T Consensus 10 ~~IqfGMT~~~V~~i~G~ 27 (154)
T 3gmx_B 10 NKIQFGMDRTLVWQLAGA 27 (154)
T ss_dssp HHCCTTCBHHHHHHHHTH
T ss_pred hhhHccCCHHHHHHHhCc
Confidence 358999999999999997
No 10
>1f46_A Cell division protein ZIPA; transmembrane, inner membrane, cell cycle; 1.50A {Escherichia coli} SCOP: d.129.4.1 PDB: 1f47_B 1s1j_A* 1s1s_A* 1y2g_A* 1f7w_A 1f7x_A 1y2f_A*
Probab=12.94 E-value=64 Score=26.64 Aligned_cols=26 Identities=27% Similarity=0.609 Sum_probs=19.9
Q ss_pred CCCCCccCCCcEEEEeeCceEEEeeCCc
Q 022129 128 TFPGVYDKERSVYMLFYPGLSFAFPIPA 155 (302)
Q Consensus 128 TyPG~yd~~~~~YvLsYPGvaF~Fpi~s 155 (302)
+-||.||++ .=..++|||+|.+.+|.
T Consensus 61 ~~pg~Fd~~--~~~~~t~gvtlfl~lP~ 86 (140)
T 1f46_A 61 VKPGTFDPE--MKDFTTPGVTIFMQVPS 86 (140)
T ss_dssp STTCCCCTT--CCSCEESEEEEEEEECS
T ss_pred CCCCCCCcc--hhcCccCcEEEEEECCC
Confidence 467777765 33458999999999995
Done!