Query 022130
Match_columns 302
No_of_seqs 164 out of 210
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 14:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_b 60S ribosomal protein L 99.9 4E-29 1.4E-33 213.7 -0.9 97 1-98 3-107 (147)
2 4a18_O RPL28, ribosomal protei 99.8 3.3E-19 1.1E-23 150.7 7.5 91 5-98 3-99 (134)
3 4fp9_B Mterf domain-containing 71.4 1.4 4.9E-05 41.4 1.6 11 164-174 220-230 (335)
4 4agh_A Mosub1, transcription c 66.2 4.6 0.00016 34.9 3.6 51 41-97 47-108 (158)
5 2l1q_A Liver-expressed antimic 51.2 4.6 0.00016 28.1 0.8 25 24-48 13-38 (40)
6 2ca6_A RAN GTPase-activating p 51.2 6.4 0.00022 34.9 2.0 11 183-193 323-333 (386)
7 4fp9_B Mterf domain-containing 44.3 6.2 0.00021 37.0 0.8 30 92-122 165-194 (335)
8 2v6y_A AAA family ATPase, P60 42.2 28 0.00095 26.2 4.0 45 83-127 24-73 (83)
9 2i7f_A Ferredoxin component of 40.8 19 0.00065 27.3 2.9 34 30-64 69-103 (108)
10 2ayu_A Nucleosome assembly pro 39.8 6.6 0.00023 38.4 0.2 20 105-124 117-136 (417)
11 1pcf_A P15, transcriptional co 37.7 13 0.00043 27.9 1.4 50 42-97 2-63 (66)
12 3tj1_A RNA polymerase I-specif 34.8 11 0.00039 38.7 1.1 11 181-191 248-258 (649)
13 1ews_A RK-1 defensin, alpha-de 33.0 22 0.00076 23.2 1.8 15 41-55 17-31 (32)
14 2qpz_A Naphthalene 1,2-dioxyge 31.9 22 0.00075 26.6 2.0 34 30-64 68-102 (103)
15 2de6_D Ferredoxin component of 26.5 33 0.0011 26.4 2.2 35 30-65 70-105 (115)
16 3dqy_A Toluene 1,2-dioxygenase 24.0 28 0.00094 26.2 1.3 34 30-64 66-100 (106)
17 4a5x_A MITD1, MIT domain-conta 23.4 86 0.0029 23.8 4.0 44 84-127 30-78 (86)
18 1i71_A APO(A), apolipoprotein( 23.3 30 0.001 26.3 1.3 11 24-34 47-57 (83)
19 1pml_A Tissue plasminogen acti 23.0 29 0.001 26.3 1.3 11 24-34 51-61 (86)
20 3c0d_A Putative nitrite reduct 22.1 53 0.0018 25.4 2.6 39 31-71 77-116 (119)
21 1fqt_A Rieske-type ferredoxin 21.7 34 0.0011 26.1 1.4 36 30-66 71-107 (112)
22 1vm9_A Toluene-4-monooxygenase 21.5 51 0.0017 24.9 2.4 33 30-64 68-101 (111)
23 2jo6_A Nitrite reductase [NAD( 20.8 62 0.0021 24.5 2.7 31 32-64 80-111 (113)
24 3gce_A Ferredoxin component of 20.6 41 0.0014 26.2 1.7 35 30-65 77-112 (121)
25 3qby_A Hepatoma-derived growth 20.4 34 0.0011 26.4 1.1 40 48-96 49-88 (94)
26 3tj1_A RNA polymerase I-specif 20.2 25 0.00085 36.3 0.4 9 83-91 151-159 (649)
No 1
>3iz5_b 60S ribosomal protein L28 (L28E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_b
Probab=99.94 E-value=4e-29 Score=213.71 Aligned_cols=97 Identities=20% Similarity=0.467 Sum_probs=45.3
Q ss_pred CCCchhHHHhhcCCcceeeeecCC-----CCCcCCCCCcccccCCCCCCCCCCcceEEEe---eCcEEEEEeechhhccC
Q 022130 1 MQHDEVIWQVIRHNHCSFMAKIET-----GKFCRNPYNVTGICNRSSCPLANSRYATIRD---HDGVFYLYMKTIERAHQ 72 (302)
Q Consensus 1 M~~D~vIW~iIn~~fCSfK~kt~~-----~~FCRNeyNvTGlCnR~SCPLANS~YATVre---~~G~~yLymKt~ERah~ 72 (302)
|+||++||+||+++|| |.+|+.+ ++|||++|||||+|++.+|||||++|+||+. ++|-+||+||+++++|.
T Consensus 3 ~mS~dL~W~iir~nn~-FlvKr~~~~~~~~~FSrep~NL~n~~S~kysGLan~K~v~V~~~~~~~~gv~l~~Kk~~~~~k 81 (147)
T 3iz5_b 3 TVPEPLIWEIVKKNNC-FLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNA 81 (147)
T ss_dssp -------------------------------------------------------CCSSSCCCCCCCSSSCEECCCCCTT
T ss_pred CCccccchhhccCcce-EEEEecCCCCccceecCCCCCcccccccccccccccceeEEEecccCCCEEEEEEeccccCCC
Confidence 3699999999999999 9999874 6799999999999999999999999999998 56889999999999999
Q ss_pred CchhhhhhcCCccHHHHHHHHHHhhc
Q 022130 73 PNQLWERVKLPRNYEKALEIIDKNLM 98 (302)
Q Consensus 73 P~klWEkikLs~Ny~kALeqId~~L~ 98 (302)
|+++|+++.|++||.+||++|...+.
T Consensus 82 Pak~~~~~~l~k~~Rk~l~~I~~~v~ 107 (147)
T 3iz5_b 82 PAKLYHKSVMRKEFRKMAKAVKNQVS 107 (147)
T ss_dssp TTCCCCEECCCSHHHHHHHHHHHHTS
T ss_pred CccceEEEeecccHHHHHHHHHHHHH
Confidence 99999999999999999999998774
No 2
>4a18_O RPL28, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_O 4a1b_O 4a1d_O
Probab=99.77 E-value=3.3e-19 Score=150.71 Aligned_cols=91 Identities=11% Similarity=0.308 Sum_probs=85.2
Q ss_pred hhHHHhhcCCcceeeeecCCCCCcCCCCCcccccCCCCCCCCCCcceEEEee-CcEEEEEeechhhccCCc----hhhhh
Q 022130 5 EVIWQVIRHNHCSFMAKIETGKFCRNPYNVTGICNRSSCPLANSRYATIRDH-DGVFYLYMKTIERAHQPN----QLWER 79 (302)
Q Consensus 5 ~vIW~iIn~~fCSfK~kt~~~~FCRNeyNvTGlCnR~SCPLANS~YATVre~-~G~~yLymKt~ERah~P~----klWEk 79 (302)
|+||+||.+++| |.+|..++.|||.+|||||+|++.+|+|||+++.+|... +|. |+||+..++|.|+ ++|.+
T Consensus 3 dL~W~ivrnnns-FLvKr~g~~FS~eP~NL~n~~S~kysGLan~KavgV~~~~~gg--v~~Kk~k~~~kPa~~~~k~~~~ 79 (134)
T 4a18_O 3 QLVWEIVKNNNA-FLVKNNGVAFTTDPFSVTGRNTQVGLGFTHRHGVALKGGAKQA--IATSLRKNQSHKVKKTGTIEAE 79 (134)
T ss_dssp HHHHHHHTTTCT-TEEEETTEEEECCTTCSSSBCSTTTCTTTSSCCEEEEEEGGGE--EEEEEECCCCCCSSCCSCSSEE
T ss_pred ceeehhhcCcce-EEEeeCCccccCCCCCccceeccccccccccceeEEEEcCCCc--EEEecCcccCCCCccccceeEE
Confidence 799999999999 999999999999999999999999999999999999953 244 9999999999999 99999
Q ss_pred h-cCCccHHHHHHHHHHhhc
Q 022130 80 V-KLPRNYEKALEIIDKNLM 98 (302)
Q Consensus 80 i-kLs~Ny~kALeqId~~L~ 98 (302)
+ .|++|+-++|.+|...+.
T Consensus 80 ~~~~~k~~Rk~~k~I~~~~~ 99 (134)
T 4a18_O 80 TLTVKGGVQRVAKVIRGRFQ 99 (134)
T ss_dssp EEEESSTHHHHHHHHHHHCC
T ss_pred EeccccchHHHHHHHHHHHh
Confidence 9 999999999999987664
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=71.40 E-value=1.4 Score=41.37 Aligned_cols=11 Identities=36% Similarity=0.238 Sum_probs=6.4
Q ss_pred HHHHHHhcCCC
Q 022130 164 ELLERLKKGVY 174 (302)
Q Consensus 164 ELleRLk~G~Y 174 (302)
..|.||..=.|
T Consensus 220 ~fL~~lG~~q~ 230 (335)
T 4fp9_B 220 IYLERLGRYQT 230 (335)
T ss_dssp HHHHHHTSCCC
T ss_pred HHHHHcCCccC
Confidence 46777754444
No 4
>4agh_A Mosub1, transcription cofactor; ssDNA binding protein; 1.79A {Magnaporthe oryzae}
Probab=66.22 E-value=4.6 Score=34.94 Aligned_cols=51 Identities=14% Similarity=0.146 Sum_probs=36.4
Q ss_pred CCCCCCCCcceEEEeeCcEEEEEe-----echhh------ccCCchhhhhhcCCccHHHHHHHHHHhh
Q 022130 41 SSCPLANSRYATIRDHDGVFYLYM-----KTIER------AHQPNQLWERVKLPRNYEKALEIIDKNL 97 (302)
Q Consensus 41 ~SCPLANS~YATVre~~G~~yLym-----Kt~ER------ah~P~klWEkikLs~Ny~kALeqId~~L 97 (302)
.+|.|.+-|++||+.-+|..|+=| |.-+- ..|+..+|..+ .+++..|+..|
T Consensus 47 ~~~~Ls~~rrvtV~~fkG~~~vdIREyY~k~G~~~PgkKGISLs~~qw~~L------~~~~~~I~~ai 108 (158)
T 4agh_A 47 PFWEISDKRRVGISQFKKMDFINIREYYEAGGEMKPGKKGIGLTVDQYTAF------LKAIPAINAEL 108 (158)
T ss_dssp EEEESSSSEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHH------HHHHHHHHHHH
T ss_pred EeEEcCCCcEEEEEeeCCCEEEEeEeEEcCCCcCCCcccceecCHHHHHHH------HHHHHHHHHHH
Confidence 579999999999999999999743 43322 24455567764 46677777655
No 5
>2l1q_A Liver-expressed antimicrobial peptide 2; polypeptide, disulfides, antimicrobial protein, LEAP-2; NMR {Homo sapiens}
Probab=51.21 E-value=4.6 Score=28.06 Aligned_cols=25 Identities=28% Similarity=0.759 Sum_probs=21.1
Q ss_pred CCCCcCCCCC-cccccCCCCCCCCCC
Q 022130 24 TGKFCRNPYN-VTGICNRSSCPLANS 48 (302)
Q Consensus 24 ~~~FCRNeyN-vTGlCnR~SCPLANS 48 (302)
.+.+|||.|- .||||.+.-|++.-.
T Consensus 13 ~GA~Crd~~EC~T~lCR~~~cs~~~~ 38 (40)
T 2l1q_A 13 IGASCRDDSECITRLCRKRRCSLSVA 38 (40)
T ss_dssp TTSBCSSGGGBTTSCEETTEECSSCC
T ss_pred cchhhccchhhhhHHhcCCCcccccc
Confidence 5779998775 799999999998754
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=51.19 E-value=6.4 Score=34.92 Aligned_cols=11 Identities=18% Similarity=0.431 Sum_probs=6.1
Q ss_pred HHHHHHHhhhh
Q 022130 183 DKYNEILDKEQ 193 (302)
Q Consensus 183 ~~~~k~l~~~~ 193 (302)
..+..+|....
T Consensus 323 ~~l~~~l~~~~ 333 (386)
T 2ca6_A 323 DEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhhhcC
Confidence 55566665543
No 7
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=44.34 E-value=6.2 Score=37.02 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=17.4
Q ss_pred HHHHhhcCCchHHHHHhhhHHHHHHHHHHHH
Q 022130 92 IIDKNLMYWPKFLVHKTKQRLTKMTQMRIRM 122 (302)
Q Consensus 92 qId~~L~yWpkflihKcKQRltkltQ~liRm 122 (302)
||-.-+.-.|..|..- ...|..-.+||+..
T Consensus 165 ev~~mv~r~P~lL~~S-~e~L~~K~efLv~~ 194 (335)
T 4fp9_B 165 QVTKILHSCPSVLRED-LGQLEYKFQYAYFR 194 (335)
T ss_dssp HHHHHHHHCGGGGTSC-HHHHHHHHHHHHTT
T ss_pred HHHHHHHhCChhhhCC-HHHHHHHHHHHHHH
Confidence 4444455566655544 45677777777653
No 8
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=42.24 E-value=28 Score=26.24 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHhhcCCchHHHH----HhhhH-HHHHHHHHHHHHHHHh
Q 022130 83 PRNYEKALEIIDKNLMYWPKFLVH----KTKQR-LTKMTQMRIRMRKLAL 127 (302)
Q Consensus 83 s~Ny~kALeqId~~L~yWpkflih----KcKQR-ltkltQ~liRmRkl~l 127 (302)
..||.+||.--..-|.||=..+.. +.|+- -+|+.+|+.|.-.|..
T Consensus 24 ~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 24 EGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTT
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777766665543 23332 3689999999888843
No 9
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=40.77 E-value=19 Score=27.25 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEe
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYM 64 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLym 64 (302)
-.|++ ||-|-...|+..-..|.+ +..+|.+|+.+
T Consensus 69 ~~Fdl~tG~~~~~P~~~~L~~~~v-~~~~g~v~v~~ 103 (108)
T 2i7f_A 69 GSFDIATGAAKAFPCQIPIKTYPV-TIEDGWVCIDQ 103 (108)
T ss_dssp CEEETTTCCBCSTTCCSCCCEECE-EEETTEEEEEC
T ss_pred CEEeCCCcCEeCCCCCCCccEEeE-EEECCEEEEeC
Confidence 56787 999988877766778865 45689998876
No 10
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Probab=39.76 E-value=6.6 Score=38.36 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=11.5
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q 022130 105 VHKTKQRLTKMTQMRIRMRK 124 (302)
Q Consensus 105 ihKcKQRltkltQ~liRmRk 124 (302)
+|..-+++.+++|=|--.|+
T Consensus 117 v~eLE~Ky~~~~~PLy~KR~ 136 (417)
T 2ayu_A 117 MFELENKFLQKYKPIWEQRS 136 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544444
No 11
>1pcf_A P15, transcriptional coactivator PC4; transcriptional cofactor, ssDNA binding, nuclear protein; 1.74A {Homo sapiens} SCOP: d.18.1.1 PDB: 2c62_A 2phe_A
Probab=37.73 E-value=13 Score=27.89 Aligned_cols=50 Identities=18% Similarity=0.408 Sum_probs=35.2
Q ss_pred CCCCCCCcceEEEeeCcEEEEEeec------hh------hccCCchhhhhhcCCccHHHHHHHHHHhh
Q 022130 42 SCPLANSRYATIRDHDGVFYLYMKT------IE------RAHQPNQLWERVKLPRNYEKALEIIDKNL 97 (302)
Q Consensus 42 SCPLANS~YATVre~~G~~yLymKt------~E------Rah~P~klWEkikLs~Ny~kALeqId~~L 97 (302)
+|-|++-++.||++-+|..|+=+-. -| =..+|..+|..+ .+++..||..|
T Consensus 2 ~~~ls~~rrvtv~~fkG~~~VdIRe~Y~~kdG~~~PgkKGIsL~~~qw~~l------~~~~~~I~~ai 63 (66)
T 1pcf_A 2 MFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQL------KEQISDIDDAV 63 (66)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEECHHHHHHH------HHHHHHHHHHH
T ss_pred eEECCCCeEEEEEEeCCCEEEEEEEEEECCCCcCCCCccccccCHHHHHHH------HHHHHHHHHHH
Confidence 6889999999999999998873321 11 123455678765 46777777765
No 12
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=34.83 E-value=11 Score=38.73 Aligned_cols=11 Identities=9% Similarity=0.262 Sum_probs=5.7
Q ss_pred ChHHHHHHHhh
Q 022130 181 PADKYNEILDK 191 (302)
Q Consensus 181 ~~~~~~k~l~~ 191 (302)
...+|.-+++.
T Consensus 248 ~~~Il~LIier 258 (649)
T 3tj1_A 248 GFQIWSLLIEK 258 (649)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 13
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=33.02 E-value=22 Score=23.22 Aligned_cols=15 Identities=47% Similarity=0.793 Sum_probs=12.9
Q ss_pred CCCCCCCCcceEEEe
Q 022130 41 SSCPLANSRYATIRD 55 (302)
Q Consensus 41 ~SCPLANS~YATVre 55 (302)
.||-|-||+|---|+
T Consensus 17 gscglfnskyiccre 31 (32)
T 1ews_A 17 GSCGLFNSKYICCRE 31 (32)
T ss_dssp ECCSSSSCSEEEEEC
T ss_pred cccccccceeEEecc
Confidence 489999999988776
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=31.89 E-value=22 Score=26.59 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=22.0
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEe
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYM 64 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLym 64 (302)
-.|++ ||-|-...|+..-..|.+. ..+|.+|+.+
T Consensus 68 ~~Fd~~~G~~~~~P~~~~L~~~~v~-~~~g~v~v~~ 102 (103)
T 2qpz_A 68 GRFDVCTGKALCAPVTQNIKTYPVK-IENLRVMIDL 102 (103)
T ss_dssp CEEETTTCCEEETTCCSCCCEECEE-EETTEEEEEC
T ss_pred CEEeCCCCCEeCCCCCCCCCEEeEE-EECCEEEEEc
Confidence 45677 7877766665555667644 4578877754
No 15
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=26.48 E-value=33 Score=26.42 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEee
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYMK 65 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLymK 65 (302)
-.|++ ||-|...-|+..-..|.+.. .+|.+|+.+-
T Consensus 70 ~~Fdl~tG~~~~~P~~~~L~~~~v~~-~~g~V~v~~~ 105 (115)
T 2de6_D 70 GAFNVCTGMPASSPCTVPLGVFEVEV-KEGEVYVAGE 105 (115)
T ss_dssp CEEETTTCCEEETTCCSCCCEEEEEE-SSSEEEEEEE
T ss_pred CEEcCCCcCEeCCCCcCCCCEEEEEE-ECCEEEEecC
Confidence 46787 99988877766667777554 5899988764
No 16
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=24.04 E-value=28 Score=26.23 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=23.6
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEe
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYM 64 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLym 64 (302)
-.|++ ||-|-..-|+..-..|.+.. .+|.+|+.+
T Consensus 66 ~~Fdl~~G~~~~~P~~~~L~~~~v~~-~~g~v~v~~ 100 (106)
T 3dqy_A 66 GKFCVRTGKVKALPACKPIKVFPIKV-EGDEVHVDL 100 (106)
T ss_dssp CEEETTTCCEEETTCCSCCCEECEEE-ETTEEEECG
T ss_pred CEEeCCCCCEeCCCCCCCccEEEEEE-ECCEEEEEc
Confidence 56775 88888776666666776655 478888765
No 17
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.38 E-value=86 Score=23.80 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHhhcCCchHHH----HHhhhHHH-HHHHHHHHHHHHHh
Q 022130 84 RNYEKALEIIDKNLMYWPKFLV----HKTKQRLT-KMTQMRIRMRKLAL 127 (302)
Q Consensus 84 ~Ny~kALeqId~~L~yWpkfli----hKcKQRlt-kltQ~liRmRkl~l 127 (302)
.||.+||.--..-+.||=..+. ...|+.|. |+.|||-|.-.|..
T Consensus 30 g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~ 78 (86)
T 4a5x_A 30 SRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKK 78 (86)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777666666655544432 12245554 88999999877753
No 18
>1i71_A APO(A), apolipoprotein(A); alipoprotein(A), kringle, protein-ligand interaction, lysine binding, hydrolase; 1.45A {Homo sapiens} SCOP: g.14.1.1 PDB: 1kiv_A 3kiv_A 4kiv_A 1krn_A 1pmk_A 2pk4_A 1pk4_A
Probab=23.29 E-value=30 Score=26.27 Aligned_cols=11 Identities=45% Similarity=0.909 Sum_probs=9.1
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+-|-
T Consensus 47 ~~NyCRNPdg~ 57 (83)
T 1i71_A 47 TRNYCRNPDAE 57 (83)
T ss_dssp CTTCCBCSSSC
T ss_pred CcccccCCCCC
Confidence 57999999874
No 19
>1pml_A Tissue plasminogen activator kringle 2; hydrolase(serine protease); 2.38A {Homo sapiens} SCOP: g.14.1.1 PDB: 1pk2_A* 1tpk_A
Probab=22.96 E-value=29 Score=26.33 Aligned_cols=11 Identities=36% Similarity=0.815 Sum_probs=9.2
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+-|-
T Consensus 51 ~~NyCRNPdg~ 61 (86)
T 1pml_A 51 KHNYCRNPDGD 61 (86)
T ss_dssp SSCCCBCSSCC
T ss_pred cCccccCCCCC
Confidence 58999999864
No 20
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=22.11 E-value=53 Score=25.41 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=20.8
Q ss_pred CCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEeechhhcc
Q 022130 31 PYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYMKTIERAH 71 (302)
Q Consensus 31 eyNv-TGlCnR~SCPLANS~YATVre~~G~~yLymKt~ERah 71 (302)
.|++ ||.|-..-| ..-..|. |+..+|.+|+.+.--|--|
T Consensus 77 ~Fdl~tG~~~~~P~-~~l~~~~-v~v~~g~V~v~~~~~~~~~ 116 (119)
T 3c0d_A 77 HFSLKSGQCLEDEA-HCLKTWR-VTVDDNQVCYLAKELEHHH 116 (119)
T ss_dssp EEETTTCBBSSCTT-CBCCEEC-EEESSSEEEEECCCC----
T ss_pred EEECCCCcCCCCCC-ceeeEEE-EEEECCEEEEEeCCccccc
Confidence 3555 666655444 2223444 4556899999887655443
No 21
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=21.68 E-value=34 Score=26.08 Aligned_cols=36 Identities=14% Similarity=0.077 Sum_probs=24.9
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEeec
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYMKT 66 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLymKt 66 (302)
-.|++ ||.|...-|+..-..|.+.. .+|.+|+.+-.
T Consensus 71 ~~Fd~~tG~~~~~P~~~~L~~~~v~~-~~g~v~v~~~~ 107 (112)
T 1fqt_A 71 GKFCVRTGKVKSPPPCEALKIFPIRI-EDNDVLVDFEA 107 (112)
T ss_dssp CEEETTTCCEEESSCCSCCCBCCEEE-ETTEEEECTTC
T ss_pred CEEeCCCCcEeCCCCCCCccEEEEEE-ECCEEEEEecc
Confidence 45777 78887776655556776544 58888887643
No 22
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=21.49 E-value=51 Score=24.92 Aligned_cols=33 Identities=18% Similarity=0.108 Sum_probs=23.2
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEe
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYM 64 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLym 64 (302)
-.|++ ||.|-. .|+..-..|.+.. .+|.+|+.+
T Consensus 68 ~~Fd~~tG~~~~-p~~~~L~~~~v~~-~~g~v~v~~ 101 (111)
T 1vm9_A 68 WTFNDGTGHGIN-PDDAALAEYPVEV-KGDDIYVST 101 (111)
T ss_dssp CEEETTTCBBSS-SSSCBCCEECEEE-ETTEEEECC
T ss_pred CEEeCCCccCCC-CCcCCcCEEEEEE-ECCEEEEec
Confidence 45777 588877 5666666777554 589988876
No 23
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=20.77 E-value=62 Score=24.52 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=16.6
Q ss_pred CCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEe
Q 022130 32 YNV-TGICNRSSCPLANSRYATIRDHDGVFYLYM 64 (302)
Q Consensus 32 yNv-TGlCnR~SCPLANS~YATVre~~G~~yLym 64 (302)
|++ ||-|-...| ..-..|. |+..+|.+|+.+
T Consensus 80 Fd~~tG~~~~~P~-~~l~~~~-v~v~~g~V~v~~ 111 (113)
T 2jo6_A 80 FRLSDGLCMEDEQ-FSVKHYE-ARVKDGVVQLRG 111 (113)
T ss_dssp EETTTTEETTTTT-TCCCEEE-EEEETTEEEEEC
T ss_pred EeCCCccCCCCCc-ccccEEe-EEEECCEEEEEc
Confidence 444 555555443 2223344 445688888765
No 24
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=20.65 E-value=41 Score=26.21 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=24.1
Q ss_pred CCCCc-ccccCCCCCCCCCCcceEEEeeCcEEEEEee
Q 022130 30 NPYNV-TGICNRSSCPLANSRYATIRDHDGVFYLYMK 65 (302)
Q Consensus 30 NeyNv-TGlCnR~SCPLANS~YATVre~~G~~yLymK 65 (302)
-.|++ ||-|-..-|+..=..|.+.. .+|.+|+.+.
T Consensus 77 ~~Fdl~tG~~~~~P~~~~L~~~~v~v-~~g~V~v~~~ 112 (121)
T 3gce_A 77 GRFDVRTGAPTALPCVLPVRAYDVVV-DGTEILVAPK 112 (121)
T ss_dssp CEEETTTCCEEETTCCSCCCBCCEEE-ETTEEEECCC
T ss_pred CEEcCCCccEeCCCCcCCcceEEEEE-ECCEEEEEEC
Confidence 45675 78887777766666777544 5888887654
No 25
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=20.41 E-value=34 Score=26.36 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcceEEEeeCcEEEEEeechhhccCCchhhhhhcCCccHHHHHHHHHHh
Q 022130 48 SRYATIRDHDGVFYLYMKTIERAHQPNQLWERVKLPRNYEKALEIIDKN 96 (302)
Q Consensus 48 S~YATVre~~G~~yLymKt~ERah~P~klWEkikLs~Ny~kALeqId~~ 96 (302)
..||-|-. ..|+.|....++.+.|++ ++.|.+||++|+.+
T Consensus 49 ~~~awv~~--~~l~pf~~~~~~~~k~~k-------~k~F~~Al~Eien~ 88 (94)
T 3qby_A 49 HETAFLGP--KDLFPYDKCKDKYGKPNK-------RKGFNEGLWEIQNN 88 (94)
T ss_dssp CCEEEECG--GGEEEHHHHHHHHCSCCS-------STTHHHHHHHHHHC
T ss_pred CCcceEch--hHeeEHHHHHHHHccCcc-------HHHHHHHHHHHhhC
Confidence 45777754 678999988888777665 79999999999864
No 26
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=20.19 E-value=25 Score=36.28 Aligned_cols=9 Identities=11% Similarity=0.010 Sum_probs=3.5
Q ss_pred CccHHHHHH
Q 022130 83 PRNYEKALE 91 (302)
Q Consensus 83 s~Ny~kALe 91 (302)
+..+-+|+-
T Consensus 151 ~~~~v~~Y~ 159 (649)
T 3tj1_A 151 PPHTLSKYI 159 (649)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 334444433
Done!