Query 022130
Match_columns 302
No_of_seqs 164 out of 210
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 14:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022130.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022130hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pwwa1 d.129.11.1 (A:1-114) U 49.6 5.5 0.0004 31.1 3.1 24 96-119 90-113 (114)
2 d1gm5a3 c.37.1.19 (A:286-549) 48.4 7.6 0.00055 33.1 4.2 36 72-113 3-40 (264)
3 d2de6a1 b.33.1.2 (A:1-142) Ter 33.7 10 0.00076 28.5 2.4 12 53-64 126-137 (142)
4 d1ewsa_ g.9.1.1 (A:) Alpha-def 33.0 10 0.00076 23.2 1.8 15 41-55 17-31 (32)
5 d2i9aa2 g.14.1.1 (A:50-132) Ur 29.6 8.8 0.00064 27.0 1.2 11 24-34 49-59 (83)
6 d1ki0a1 g.14.1.1 (A:81-163) Pl 26.4 11 0.00082 26.5 1.3 11 24-34 49-59 (83)
7 d2hpqp_ g.14.1.1 (P:) Meizothr 26.1 10 0.00076 26.5 1.1 11 24-34 46-56 (79)
8 d2d8ya2 g.39.1.3 (A:44-85) Epl 25.3 9.6 0.0007 24.9 0.7 21 38-61 2-22 (42)
9 d1nl1a1 g.14.1.1 (A:66-147) Pr 25.2 11 0.00083 26.5 1.2 11 24-34 46-56 (82)
10 d1ijva_ g.9.1.1 (A:) Beta-defe 24.7 12 0.00088 23.6 1.1 16 35-50 9-24 (36)
11 d5hpga_ g.14.1.1 (A:) Plasmino 20.9 16 0.0011 25.8 1.2 11 24-34 48-58 (84)
No 1
>d2pwwa1 d.129.11.1 (A:1-114) Uncharacterized protein ABC2387 {Bacillus clausii [TaxId: 79880]}
Probab=49.59 E-value=5.5 Score=31.05 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=21.2
Q ss_pred hhcCCchHHHHHhhhHHHHHHHHH
Q 022130 96 NLMYWPKFLVHKTKQRLTKMTQMR 119 (302)
Q Consensus 96 ~L~yWpkflihKcKQRltkltQ~l 119 (302)
.-.++|.-++++|+++|..|.+.|
T Consensus 90 e~e~fP~~vv~~~~~~L~~i~~~l 113 (114)
T d2pwwa1 90 EGETFPQAVIDKCNNKLALLAKTI 113 (114)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhc
Confidence 345799999999999999999876
No 2
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=48.43 E-value=7.6 Score=33.11 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=30.6
Q ss_pred CCchhhhhhcCCccHHHHHHHHHHhhcCCch--HHHHHhhhHHH
Q 022130 72 QPNQLWERVKLPRNYEKALEIIDKNLMYWPK--FLVHKTKQRLT 113 (302)
Q Consensus 72 ~P~klWEkikLs~Ny~kALeqId~~L~yWpk--flihKcKQRlt 113 (302)
+|..+.++.+|. ++.+||..| |+|+ --++++++||.
T Consensus 3 LP~~il~k~~l~-s~~~Al~~I-----H~P~~~~~l~~Ar~RL~ 40 (264)
T d1gm5a3 3 LPERILEKRKLL-GVKDAYYGM-----HFPKTFYHLEKARERLA 40 (264)
T ss_dssp SCHHHHHHHCCC-CSHHHHHHH-----HSCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHcCCC-CHHHHHHHh-----cCCCCHHHHHHHHHHHH
Confidence 699999999997 888999998 5776 45789999986
No 3
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}
Probab=33.74 E-value=10 Score=28.52 Aligned_cols=12 Identities=17% Similarity=0.894 Sum_probs=10.4
Q ss_pred EEeeCcEEEEEe
Q 022130 53 IRDHDGVFYLYM 64 (302)
Q Consensus 53 Vre~~G~~yLym 64 (302)
|++.+|.+|+|+
T Consensus 126 v~e~~G~I~v~l 137 (142)
T d2de6a1 126 VQEAKGCVFIYL 137 (142)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEEEEEe
Confidence 678899999987
No 4
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=33.02 E-value=10 Score=23.22 Aligned_cols=15 Identities=47% Similarity=0.793 Sum_probs=12.9
Q ss_pred CCCCCCCCcceEEEe
Q 022130 41 SSCPLANSRYATIRD 55 (302)
Q Consensus 41 ~SCPLANS~YATVre 55 (302)
.||-|-||+|---|+
T Consensus 17 gscglfnskyiccre 31 (32)
T d1ewsa_ 17 GSCGLFNSKYICCRE 31 (32)
T ss_dssp ECCSSSSCSEEEEEC
T ss_pred cccccccceeEEecc
Confidence 489999999988776
No 5
>d2i9aa2 g.14.1.1 (A:50-132) Urokinase-type plasminogen activator {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.56 E-value=8.8 Score=26.97 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=8.8
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+-|-
T Consensus 49 ~hNyCRNP~~~ 59 (83)
T d2i9aa2 49 KHNYCRNPDNR 59 (83)
T ss_dssp SSCCCBCTTCB
T ss_pred CcccccCCCCC
Confidence 57999999654
No 6
>d1ki0a1 g.14.1.1 (A:81-163) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.42 E-value=11 Score=26.49 Aligned_cols=11 Identities=45% Similarity=0.930 Sum_probs=9.0
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+.+-
T Consensus 49 ~hNyCRNP~~~ 59 (83)
T d1ki0a1 49 EENYCRNPDND 59 (83)
T ss_dssp CTTCCBCTTCC
T ss_pred ccccccCCCCC
Confidence 58999999763
No 7
>d2hpqp_ g.14.1.1 (P:) Meizothrombin {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.12 E-value=10 Score=26.55 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=9.0
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+-+.
T Consensus 46 ~~NyCRNP~~~ 56 (79)
T d2hpqp_ 46 VENFCRNPDGD 56 (79)
T ss_dssp CTTCCBCSSCC
T ss_pred ccccccCCCCC
Confidence 47999999864
No 8
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.28 E-value=9.6 Score=24.89 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.3
Q ss_pred cCCCCCCCCCCcceEEEeeCcEEE
Q 022130 38 CNRSSCPLANSRYATIRDHDGVFY 61 (302)
Q Consensus 38 CnR~SCPLANS~YATVre~~G~~y 61 (302)
|..-.|.|+-+.|| ..+|++|
T Consensus 2 C~~C~~~Ls~~~ya---s~~G~lY 22 (42)
T d2d8ya2 2 CSYCNNKLSLGTYA---SLHGRIY 22 (42)
T ss_dssp CTTTCCBCCTTTCC---CSSSCCC
T ss_pred cCcCCCCccCCcch---hhCCEec
Confidence 88889999999999 4589887
No 9
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.21 E-value=11 Score=26.47 Aligned_cols=11 Identities=45% Similarity=0.939 Sum_probs=9.0
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+.+-
T Consensus 46 ~~NyCRNP~~~ 56 (82)
T d1nl1a1 46 RENFCRNPDGS 56 (82)
T ss_dssp CTTCCBCTTCC
T ss_pred ccccccCCCCC
Confidence 57999998763
No 10
>d1ijva_ g.9.1.1 (A:) Beta-defensin, BD {Human (Homo sapiens), HBD1 [TaxId: 9606]}
Probab=24.73 E-value=12 Score=23.64 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=13.2
Q ss_pred ccccCCCCCCCCCCcc
Q 022130 35 TGICNRSSCPLANSRY 50 (302)
Q Consensus 35 TGlCnR~SCPLANS~Y 50 (302)
-|.||-+.|||-|--=
T Consensus 9 gg~c~~s~cpl~~ri~ 24 (36)
T d1ijva_ 9 GGQCLYSACPIFTKIQ 24 (36)
T ss_dssp TCEEESSCCCTTCCEE
T ss_pred CceeccccCcceEeee
Confidence 4899999999988643
No 11
>d5hpga_ g.14.1.1 (A:) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91 E-value=16 Score=25.76 Aligned_cols=11 Identities=36% Similarity=0.818 Sum_probs=8.9
Q ss_pred CCCCcCCCCCc
Q 022130 24 TGKFCRNPYNV 34 (302)
Q Consensus 24 ~~~FCRNeyNv 34 (302)
..|||||+-+-
T Consensus 48 ~~NyCRNP~~~ 58 (84)
T d5hpga_ 48 EKNYCRNPDGD 58 (84)
T ss_dssp CTTCCBCTTCC
T ss_pred ccccccCCCCC
Confidence 57999998863
Done!